BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7328
(159 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GL2|D Chain D, Crystal Structure Of An Endosomal Snare Core Complex
Length = 65
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 39/55 (70%)
Query: 77 QDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVT 131
QD GL+ALS +ISRQK + I NE+D QN+++DD+ +++T+ ++ E +VT
Sbjct: 7 QDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVT 61
>pdb|3ZUR|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
pdb|3ZUR|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc0-A-Snap25-Hn-A
Length = 960
Score = 41.2 bits (95), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 32/61 (52%)
Query: 78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD 137
D+ LE +S +I +++AL + NE+D QN +D I E+ D I + T +L
Sbjct: 453 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGSG 512
Query: 138 A 138
A
Sbjct: 513 A 513
>pdb|1KIL|D Chain D, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
Length = 66
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL 134
D+ LE +S +I +++AL + NE+D QN +D I E+ D I + T +L
Sbjct: 9 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 65
>pdb|1URQ|D Chain D, Crystal Structure Of Neuronal Q-Snares In Complex With
R-Snare Motif Of Tomosyn
Length = 69
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL 134
D+ LE +S +I +++AL + NE+D QN +D I E+ D I + T +L
Sbjct: 12 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 68
>pdb|3HD7|D Chain D, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3HD7|H Chain H, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3IPD|D Chain D, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
pdb|3IPD|H Chain H, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
Length = 68
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL 134
D+ LE +S +I +++AL + NE+D QN +D I E+ D I + T +L
Sbjct: 11 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 67
>pdb|1SFC|D Chain D, Neuronal Synaptic Fusion Complex
pdb|1SFC|H Chain H, Neuronal Synaptic Fusion Complex
pdb|1SFC|L Chain L, Neuronal Synaptic Fusion Complex
Length = 87
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL 134
D+ LE +S +I +++AL + NE+D QN +D I E+ D I + T +L
Sbjct: 28 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 84
>pdb|1N7S|D Chain D, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 66
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL 134
D+ LE +S +I +++AL + NE+D QN +D I E+ D I + T +L
Sbjct: 9 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 65
>pdb|3RK2|D Chain D, Truncated Snare Complex
pdb|3RK2|H Chain H, Truncated Snare Complex
pdb|3RK3|D Chain D, Truncated Snare Complex With Complexin
pdb|3RL0|D Chain D, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|H Chain H, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|L Chain L, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|P Chain P, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|T Chain T, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|X Chain X, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|BB Chain b, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|FF Chain f, Truncated Snare Complex With Complexin (P1)
Length = 65
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL 134
D+ LE +S +I +++AL + NE+D QN +D I E+ D I + T +L
Sbjct: 9 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 65
>pdb|1XTG|B Chain B, Crystal Structure Of Neurotoxin BontA COMPLEXED WITH
Synaptosomal-Associated Protein 25
Length = 59
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL 134
D+ LE +S +I +++AL + NE+D QN +D I E+ D I + T +L
Sbjct: 2 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 58
>pdb|3B5N|D Chain D, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|H Chain H, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|L Chain L, Structure Of The Yeast Plasma Membrane Snare Complex
Length = 64
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%)
Query: 78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSI 133
D+ L+ + +V +R K +ALT E+D Q +++I E D ++++ TN++ I
Sbjct: 9 DRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAGI 64
>pdb|3ZUS|A Chain A, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|B Chain B, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|C Chain C, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
pdb|3ZUS|D Chain D, Crystal Structure Of An Engineered Botulinum Neurotoxin
Type A-Snare23 Derivative, Lc-A-Snap23-Hn-A
Length = 927
Score = 31.6 bits (70), Expect = 0.20, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 72 MMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMD 117
+ + ++ L + ++ K++AL I NE+D QN + IT++ D
Sbjct: 430 LCVDEMEENLTQVGSILGNLKDMALNIGNEIDAQNRQIKRITDKAD 475
>pdb|4FUU|A Chain A, Crystal Structure Of A Leucine Aminopeptidase Precursor
(Bt_2548) From Bacteroides Thetaiotaomicron Vpi-5482 At
1.30 A Resolution
Length = 309
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 20/73 (27%)
Query: 10 LLEQLQSSSVKITNMYNNRPSY-----------------SAQRNELFADVGTTGWGDDAS 52
L +L++ K+TN Y + +Y S +R LFA T W D+ +
Sbjct: 54 LAGKLEAFGAKVTNQYADLIAYDGTLLKARNIIGSYKPESKKRIALFAHWDTRPWADNDA 113
Query: 53 DEE---SPLLGAN 62
DE+ +P+LGAN
Sbjct: 114 DEKNHHTPILGAN 126
>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With
Clavatadine A
Length = 238
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 32 SAQRNELFADVGTTGWGDDASDEESPLLGANIAD 65
S + NE++ VG T WG+ + E P + N+ +
Sbjct: 193 SCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVE 226
>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
pdb|1XX9|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotinm84r
Length = 238
Score = 29.6 bits (65), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 32 SAQRNELFADVGTTGWGDDASDEESPLLGANIAD 65
S + NE++ VG T WG+ + E P + N+ +
Sbjct: 193 SCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVE 226
>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXD|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Mutated Ecotin
pdb|1XXF|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
pdb|1XXF|B Chain B, Crystal Structure Of The Fxia Catalytic Domain In Complex
With Ecotin Mutant (Ecotinp)
Length = 238
Score = 29.3 bits (64), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 32 SAQRNELFADVGTTGWGDDASDEESPLLGANIAD 65
S + NE++ VG T WG+ + E P + N+ +
Sbjct: 193 SCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVE 226
>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole
Inhibitor
pdb|3SOS|A Chain A, Benzothiazinone Inhibitor In Complex With Fxia
Length = 238
Score = 29.3 bits (64), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 32 SAQRNELFADVGTTGWGDDASDEESPLLGANIAD 65
S + NE++ VG T WG+ + E P + N+ +
Sbjct: 193 SCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVE 226
>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4-
Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole
pdb|1ZRK|A Chain A, Factor Xi Complexed With 3-Hydroxypropyl 3-(7-
Amidinonaphthalene-1-Carboxamido)benzenesulfonate
pdb|1ZSL|A Chain A, Factor Xi Complexed With A Pyrimidinone Inhibitor
Length = 238
Score = 29.3 bits (64), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 32 SAQRNELFADVGTTGWGDDASDEESPLLGANIAD 65
S + NE++ VG T WG+ + E P + N+ +
Sbjct: 193 SCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVE 226
>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Coagulation Factor Xia In Complex With Benzamidine
(s434a- T475a-k437 Mutant)
Length = 238
Score = 29.3 bits (64), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 32 SAQRNELFADVGTTGWGDDASDEESPLLGANIAD 65
S + NE++ VG T WG+ + E P + N+ +
Sbjct: 193 SCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVE 226
>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine (S434a-T475a-K505
Mutant)
Length = 238
Score = 29.3 bits (64), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 32 SAQRNELFADVGTTGWGDDASDEESPLLGANIAD 65
S + NE++ VG T WG+ + E P + N+ +
Sbjct: 193 SCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVE 226
>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Kunitz Protease Inhibitor
Domain Of Protease Nexin Ii
Length = 237
Score = 29.3 bits (64), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 32 SAQRNELFADVGTTGWGDDASDEESPLLGANIAD 65
S + NE++ VG T WG+ + E P + N+ +
Sbjct: 193 SCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVE 226
>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With Benzamidine
(S434a-T475a-C482s-K437a Mutant)
pdb|1ZPB|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 4-Methyl-Pentanoic Acid {1-[4-
Guanidino-1-(Thiazole-2-Carbonyl)-Butylcarbamoyl]-2-
Methyl- Propyl}-Amide
pdb|1ZPC|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
2-[2-(3-Chloro-Phenyl)-2-Hydroxy-
Acetylamino]-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]- 3-Methyl-Butyramide
pdb|2FDA|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Coagulation Factor Xia In Complex With
Alpha-Ketothiazole Arginine Derived Ligand
pdb|1ZMJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With 4-(Guanidinomethyl)-Phenylboronic Acid
pdb|1ZML|A Chain A, Crystal Structure Of The Catalytic Domain Of Factor Xi In
Complex With (R)-1-(4-(4-(Hydroxymethyl)-1,3,2-
Dioxaborolan-2-Yl)phenethyl)guanidine
pdb|1ZMN|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
(R)-1-(4-(4-(Hydroxymethyl)-1,3,
2-Dioxaborolan-2-Yl)phenyl)guanidine
pdb|1ZOM|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With A Peptidomimetic Inhibitor
pdb|1ZSJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
N-(7-Carbamimidoyl-Naphthalen-1-
Yl)-3-Hydroxy-2-Methyl-Benzamide
pdb|1ZSK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With
6-Carbamimidoyl-4-(3-Hydroxy-2-
Methyl-Benzoylamino)-Naphthalene-2-Carboxylic Acid
Methyl Ester
pdb|1ZTJ|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Benzylamino-2-
Methylsulfanyl-6-Oxo-6h-Pyrimidin-1-Yl)-N-[4-Guanidino-
1- (Thiazole-2-Carbonyl)-Butyl]-Acetamide
pdb|1ZTK|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With 2-(5-Amino-6-Oxo-2-M-Tolyl-6h-
Pyrimidin-1-Yl)-N-[4-Guanidino-1-(Thiazole-2-Carbonyl)-
Butyl]-Acetamide
pdb|1ZTL|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation
Factor Xi In Complex With N-[4-Guanidino-1-(Thiazole-2-
Carbonyl)-Butyl]-2-{6-Oxo-5-[(Quinolin-8-Ylmethyl)-
Amino]- 2-M-Tolyl-6h-Pyrimidin-1-Yl}-Acetamide
Length = 238
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 32 SAQRNELFADVGTTGWGDDASDEESPLLGANIAD 65
S + NE++ VG T WG+ + E P + N+ +
Sbjct: 193 SCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVE 226
>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With
2-Guanidino-1-(4-(4,4,5,5-
Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl
Nicotinate
Length = 237
Score = 29.3 bits (64), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 32 SAQRNELFADVGTTGWGDDASDEESPLLGANIAD 65
S + NE++ VG T WG+ + E P + N+ +
Sbjct: 193 SCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVE 226
>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human
Plasma Coagulation Factor Xi Zymogen
Length = 625
Score = 28.1 bits (61), Expect = 2.1, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 32 SAQRNELFADVGTTGWGDDASDEESPLLGANIAD 65
S + NE++ VG T WG+ + E P + N+ +
Sbjct: 580 SCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVE 613
>pdb|1L4A|D Chain D, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 87
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 81 LEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL 134
++ +S +I +N+A+ + NE+ QN VD I ++ + I + T +L
Sbjct: 32 MKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLL 85
>pdb|2FR0|A Chain A, The First Ketoreductase Of The Erythromycin Synthase
(Crystal Form 1)
pdb|2FR1|A Chain A, The First Ketoreductase Of The Erythromycin Synthase
(Crystal Form 2)
Length = 486
Score = 27.3 bits (59), Expect = 4.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 49 DDASDEESPLLGANIADVREQQQMMIAAQ 77
D+A EE+PL A++AD Q M++A+
Sbjct: 96 DEAEPEEAPLALASLADTLSLVQAMVSAE 124
>pdb|3A21|A Chain A, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A21|B Chain B, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A22|A Chain A, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A22|B Chain B, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A23|A Chain A, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
pdb|3A23|B Chain B, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
Length = 614
Score = 26.9 bits (58), Expect = 5.3, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 44 TTGWGDDASDEESPLLGANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVD 103
TT + A ++P + A D R Q + +A GL+A KV+S N A+ + N
Sbjct: 273 TTMTSETAGILKNPEVIAVDQDSRGLQGVKVAEDTTGLQAYGKVLSGTGNRAVVLLNRTS 332
Query: 104 VQNDL 108
+D+
Sbjct: 333 AAHDI 337
>pdb|3UNV|A Chain A, Pantoea Agglomerans Phenylalanine Aminomutase
pdb|3UNV|B Chain B, Pantoea Agglomerans Phenylalanine Aminomutase
Length = 547
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 84 LSKVISRQKNIALTISNEVDVQND--LVDDITERMDH 118
L V KNI T++NE++ ND L+D TE + H
Sbjct: 327 LGPVADTLKNIKQTLTNELNSSNDNPLIDQTTEEVFH 363
>pdb|1Z2K|A Chain A, Nmr Structure Of The D1 Domain Of The Natural Killer
Cell Receptor, 2b4
Length = 109
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 12 EQLQSSSVKITNMYNNRPSYSAQRNELFADVGTTGWGDDA 51
EQ ++I N YN+ PS+S N F+D+ +GD A
Sbjct: 37 EQGSHRKIEILNWYNDGPSWS---NVSFSDIYGFDYGDFA 73
>pdb|2PTT|B Chain B, Structure Of Nk Cell Receptor 2b4 (Cd244) Bound To Its
Ligand Cd48
pdb|2PTU|A Chain A, Structure Of Nk Cell Receptor 2b4 (Cd244)
pdb|2PTU|B Chain B, Structure Of Nk Cell Receptor 2b4 (Cd244)
pdb|2PTU|C Chain C, Structure Of Nk Cell Receptor 2b4 (Cd244)
pdb|2PTU|D Chain D, Structure Of Nk Cell Receptor 2b4 (Cd244)
Length = 112
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 12 EQLQSSSVKITNMYNNRPSYSAQRNELFADVGTTGWGDDA 51
EQ ++I N YN+ PS+S N F+D+ +GD A
Sbjct: 40 EQGSHRKIEILNWYNDGPSWS---NVSFSDIYGFDYGDFA 76
>pdb|2OVU|A Chain A, Crystal Strucure Of A Lectin From Canavalia Gladiata (Cgl)
In Complex With Man1-2man-Ome
Length = 237
Score = 26.2 bits (56), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Query: 50 DASDEESPLLGANIADVREQQQMMIAAQDQGL-----------EALSKVISRQKNIALTI 98
D D + P +G +I VR ++ Q+ + + LS V+S + T+
Sbjct: 16 DIGDPDYPHIGIDIKSVRSKKTAKWNMQNGKVGTAHIIYNSVGKRLSAVVSYPNGDSATV 75
Query: 99 SNEVDVQNDLVDDITERMDHTNVSIQRETNQVTS 132
S +VD+ N L + + + + + +ETN + S
Sbjct: 76 SYDVDLDNVLPEWVRVGLS-ASTGLYKETNTILS 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,610,865
Number of Sequences: 62578
Number of extensions: 119781
Number of successful extensions: 462
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 414
Number of HSP's gapped (non-prelim): 80
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)