Query psy7328
Match_columns 159
No_of_seqs 188 out of 1045
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 23:57:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7328.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7328hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3202|consensus 100.0 7.3E-28 1.6E-32 188.0 16.7 154 2-159 77-232 (235)
2 KOG3385|consensus 99.6 1.4E-14 2.9E-19 100.7 10.3 81 75-155 32-113 (118)
3 PF05739 SNARE: SNARE domain; 99.5 1.7E-13 3.7E-18 86.7 9.1 62 76-137 1-62 (63)
4 KOG0809|consensus 99.4 2.1E-12 4.5E-17 103.0 10.5 152 3-157 134-296 (305)
5 COG5325 t-SNARE complex subuni 99.3 5.1E-11 1.1E-15 94.4 12.0 92 67-158 183-277 (283)
6 cd00193 t_SNARE Soluble NSF (N 99.3 3.2E-11 6.8E-16 74.9 7.7 59 75-133 2-60 (60)
7 smart00397 t_SNARE Helical reg 99.3 5E-11 1.1E-15 75.2 8.6 64 70-133 3-66 (66)
8 PF09753 Use1: Membrane fusion 99.2 7.8E-10 1.7E-14 88.0 15.2 95 60-157 151-245 (251)
9 KOG0810|consensus 99.1 3.1E-10 6.7E-15 92.1 9.2 64 75-138 202-265 (297)
10 KOG0811|consensus 99.1 1.1E-09 2.4E-14 87.6 11.7 71 68-138 169-239 (269)
11 KOG3065|consensus 99.0 1.2E-09 2.7E-14 87.5 7.8 60 75-134 214-273 (273)
12 KOG0812|consensus 98.9 1.1E-07 2.4E-12 76.0 13.7 81 68-148 209-297 (311)
13 COG5074 t-SNARE complex subuni 98.5 2.4E-06 5.1E-11 66.7 10.9 63 75-137 181-243 (280)
14 KOG2678|consensus 98.2 4.9E-05 1.1E-09 58.9 11.5 93 63-158 142-235 (244)
15 KOG1666|consensus 98.2 0.00015 3.3E-09 55.9 14.0 64 75-138 131-194 (220)
16 PF03908 Sec20: Sec20; InterP 97.6 0.0032 6.9E-08 42.6 11.5 80 78-157 7-87 (92)
17 PF00957 Synaptobrevin: Synapt 97.3 0.0037 8E-08 41.8 8.9 56 79-134 3-61 (89)
18 PF12352 V-SNARE_C: Snare regi 97.3 0.0079 1.7E-07 37.9 9.9 62 75-136 4-65 (66)
19 KOG0860|consensus 97.1 0.011 2.3E-07 41.7 10.0 59 76-146 37-98 (116)
20 KOG3894|consensus 97.1 0.019 4.2E-07 46.9 12.7 84 75-158 228-311 (316)
21 KOG3202|consensus 96.9 0.039 8.4E-07 43.7 12.8 94 61-158 141-234 (235)
22 KOG3208|consensus 96.9 0.12 2.6E-06 40.4 14.7 61 78-138 148-208 (231)
23 KOG0810|consensus 96.8 0.017 3.7E-07 47.2 10.2 77 65-146 200-276 (297)
24 KOG3251|consensus 96.8 0.055 1.2E-06 42.0 12.1 118 11-145 71-197 (213)
25 KOG0811|consensus 96.6 0.078 1.7E-06 42.8 12.4 74 63-136 171-244 (269)
26 KOG0809|consensus 95.4 0.26 5.5E-06 40.1 10.2 93 62-158 208-300 (305)
27 PF10779 XhlA: Haemolysin XhlA 93.8 1.1 2.3E-05 28.7 8.8 55 98-154 11-65 (71)
28 COG5325 t-SNARE complex subuni 93.6 1.9 4.1E-05 34.9 11.2 88 67-155 190-278 (283)
29 KOG0860|consensus 93.3 2 4.4E-05 30.3 11.9 62 61-127 26-87 (116)
30 PF05531 NPV_P10: Nucleopolyhe 93.1 1.1 2.3E-05 29.2 7.5 61 64-124 3-66 (75)
31 PF00957 Synaptobrevin: Synapt 92.5 2.1 4.6E-05 28.3 10.7 49 78-127 13-61 (89)
32 COG5074 t-SNARE complex subuni 92.3 3.3 7.1E-05 32.9 10.6 60 74-133 187-246 (280)
33 PF01519 DUF16: Protein of unk 91.4 2.3 4.9E-05 29.4 7.8 50 76-125 50-99 (102)
34 KOG3065|consensus 89.9 4.9 0.00011 32.6 9.8 78 61-138 58-138 (273)
35 KOG0812|consensus 87.6 9.4 0.0002 31.2 9.9 62 71-132 226-287 (311)
36 PF07889 DUF1664: Protein of u 87.6 8.5 0.00018 27.6 9.0 59 77-135 66-124 (126)
37 PF11166 DUF2951: Protein of u 86.8 7.7 0.00017 26.4 9.8 69 76-145 8-77 (98)
38 PF09753 Use1: Membrane fusion 86.8 13 0.00029 29.4 10.5 66 90-155 171-240 (251)
39 PF00523 Fusion_gly: Fusion gl 85.7 0.62 1.4E-05 40.7 2.5 28 109-136 440-467 (490)
40 PHA03386 P10 fibrous body prot 85.6 6.3 0.00014 26.7 6.7 55 66-124 6-60 (94)
41 PF05478 Prominin: Prominin; 82.1 26 0.00057 32.6 11.6 17 90-106 361-377 (806)
42 PF09680 Tiny_TM_bacill: Prote 81.2 1.6 3.5E-05 22.0 1.9 14 143-156 6-19 (24)
43 PHA03240 envelope glycoprotein 80.0 1.7 3.6E-05 34.1 2.6 18 141-158 213-230 (258)
44 PRK01026 tetrahydromethanopter 78.7 16 0.00034 23.9 6.8 24 101-124 16-39 (77)
45 TIGR01732 tiny_TM_bacill conse 78.2 2.6 5.6E-05 21.7 2.1 14 143-156 8-21 (26)
46 KOG0862|consensus 77.5 26 0.00057 27.4 8.5 78 79-156 134-211 (216)
47 PHA03395 p10 fibrous body prot 76.6 19 0.0004 24.1 6.5 57 67-123 6-65 (87)
48 PF03904 DUF334: Domain of unk 76.1 37 0.00079 26.8 10.7 13 103-115 93-105 (230)
49 PF12495 Vip3A_N: Vegetative i 75.1 28 0.00061 25.0 7.6 74 60-134 34-114 (177)
50 PF04210 MtrG: Tetrahydrometha 74.1 20 0.00044 22.9 5.9 23 102-124 14-36 (70)
51 PF04102 SlyX: SlyX; InterPro 73.9 20 0.00043 22.7 6.6 49 78-126 3-51 (69)
52 TIGR01149 mtrG N5-methyltetrah 73.1 22 0.00047 22.8 6.8 24 101-124 13-36 (70)
53 KOG0859|consensus 72.6 14 0.0003 28.7 5.8 14 81-94 127-140 (217)
54 PRK02119 hypothetical protein; 71.2 25 0.00053 22.6 7.7 52 74-125 4-55 (73)
55 PF06143 Baculo_11_kDa: Baculo 70.8 5.7 0.00012 26.5 2.9 9 129-137 21-29 (84)
56 PRK11637 AmiB activator; Provi 69.5 71 0.0015 27.2 11.2 58 79-136 75-132 (428)
57 PF10669 Phage_Gp23: Protein g 69.1 14 0.0003 25.4 4.6 30 64-93 81-110 (121)
58 PRK10884 SH3 domain-containing 68.8 53 0.0011 25.5 12.3 40 93-132 118-157 (206)
59 cd00179 SynN Syntaxin N-termin 67.3 42 0.00091 23.8 8.1 61 75-135 9-69 (151)
60 PRK00846 hypothetical protein; 66.2 34 0.00074 22.4 7.9 49 78-126 12-60 (77)
61 TIGR01294 P_lamban phospholamb 65.7 7.4 0.00016 22.8 2.4 15 142-156 36-50 (52)
62 PF01519 DUF16: Protein of unk 65.2 43 0.00092 23.1 7.1 58 76-134 34-94 (102)
63 PF08372 PRT_C: Plant phosphor 64.2 57 0.0012 24.2 7.7 22 81-102 54-75 (156)
64 PRK04406 hypothetical protein; 64.0 37 0.0008 22.0 8.3 52 74-125 6-57 (75)
65 PF04272 Phospholamban: Phosph 64.0 7.4 0.00016 22.8 2.2 15 142-156 36-50 (52)
66 PF10717 ODV-E18: Occlusion-de 63.4 8 0.00017 25.7 2.5 11 142-152 27-37 (85)
67 PF06789 UPF0258: Uncharacteri 62.6 2.9 6.3E-05 30.9 0.4 36 120-159 117-152 (159)
68 COG4064 MtrG Tetrahydromethano 62.4 39 0.00084 21.7 7.1 25 100-124 15-39 (75)
69 PF03904 DUF334: Domain of unk 61.2 81 0.0017 25.0 11.2 18 118-135 124-141 (230)
70 PRK00736 hypothetical protein; 61.2 39 0.00085 21.3 7.5 47 79-125 5-51 (68)
71 PHA02844 putative transmembran 58.9 27 0.00059 22.7 4.3 20 138-157 43-62 (75)
72 PF06024 DUF912: Nucleopolyhed 58.9 10 0.00022 25.9 2.6 16 141-156 63-78 (101)
73 PRK04325 hypothetical protein; 58.6 46 0.001 21.4 7.8 48 78-125 8-55 (74)
74 PF12575 DUF3753: Protein of u 58.2 14 0.0003 23.9 2.9 9 143-151 50-58 (72)
75 PLN03160 uncharacterized prote 58.0 9 0.00019 29.9 2.4 17 140-156 39-55 (219)
76 KOG3894|consensus 55.7 72 0.0016 26.4 7.3 28 128-155 284-311 (316)
77 PF05393 Hum_adeno_E3A: Human 55.7 11 0.00023 25.4 2.1 17 142-158 36-52 (94)
78 PRK00295 hypothetical protein; 54.7 52 0.0011 20.8 7.5 46 80-125 6-51 (68)
79 PF11657 Activator-TraM: Trans 54.0 85 0.0018 23.0 12.7 24 78-101 49-72 (144)
80 PF08650 DASH_Dad4: DASH compl 53.8 58 0.0013 21.0 5.8 35 104-138 8-42 (72)
81 PF14362 DUF4407: Domain of un 53.8 1.2E+02 0.0025 24.5 11.7 17 10-26 143-159 (301)
82 KOG1691|consensus 53.5 85 0.0018 24.5 7.0 59 79-155 134-192 (210)
83 PF05546 She9_MDM33: She9 / Md 52.6 1E+02 0.0022 24.0 7.3 17 109-125 115-131 (207)
84 PF10267 Tmemb_cc2: Predicted 52.2 1.5E+02 0.0033 25.4 15.6 50 78-127 268-318 (395)
85 PF07798 DUF1640: Protein of u 51.0 1E+02 0.0022 23.0 12.2 29 97-125 117-145 (177)
86 PF09006 Surfac_D-trimer: Lung 51.0 33 0.00071 20.2 3.4 30 7-41 4-33 (46)
87 PF06120 Phage_HK97_TLTM: Tail 50.5 1.4E+02 0.0031 24.6 9.0 31 95-125 76-106 (301)
88 smart00503 SynN Syntaxin N-ter 50.3 75 0.0016 21.3 8.1 62 74-135 10-71 (117)
89 PF10241 KxDL: Uncharacterized 49.3 75 0.0016 21.0 10.5 72 61-132 11-82 (88)
90 PRK04654 sec-independent trans 49.2 1.3E+02 0.0028 23.6 8.6 24 81-104 29-52 (214)
91 PF11446 DUF2897: Protein of u 48.5 19 0.0004 22.0 2.2 16 139-154 2-17 (55)
92 PRK11637 AmiB activator; Provi 47.9 1.7E+02 0.0038 24.8 11.5 60 79-138 68-127 (428)
93 PRK02793 phi X174 lysis protei 47.2 74 0.0016 20.3 7.8 48 78-125 7-54 (72)
94 PRK03625 tatE twin arginine tr 47.1 18 0.0004 23.0 2.1 15 141-155 5-19 (67)
95 PF10498 IFT57: Intra-flagella 47.0 1.6E+02 0.0034 24.9 8.2 65 73-137 281-347 (359)
96 PHA03049 IMV membrane protein; 47.0 25 0.00055 22.3 2.7 15 143-157 7-21 (68)
97 KOG2678|consensus 46.8 1.5E+02 0.0032 23.6 8.8 47 110-156 179-229 (244)
98 COG4942 Membrane-bound metallo 46.6 1.9E+02 0.0042 25.0 9.9 56 77-132 43-98 (420)
99 PF04508 Pox_A_type_inc: Viral 46.4 39 0.00085 16.9 2.8 18 3-20 2-19 (23)
100 PF05781 MRVI1: MRVI1 protein; 46.3 43 0.00094 29.8 4.9 22 127-149 466-487 (538)
101 PF03670 UPF0184: Uncharacteri 45.7 81 0.0018 20.9 5.1 28 72-99 26-53 (83)
102 PF02646 RmuC: RmuC family; I 44.9 1.7E+02 0.0037 23.8 9.8 69 73-145 7-75 (304)
103 PF08999 SP_C-Propep: Surfacta 44.3 29 0.00064 23.0 2.8 12 144-155 37-48 (93)
104 PF06738 DUF1212: Protein of u 44.1 70 0.0015 23.8 5.4 34 111-144 72-105 (193)
105 PF05961 Chordopox_A13L: Chord 43.7 30 0.00066 22.0 2.7 14 143-156 7-20 (68)
106 PF05957 DUF883: Bacterial pro 42.2 99 0.0022 20.4 10.7 31 75-105 5-35 (94)
107 PF01601 Corona_S2: Coronaviru 42.0 11 0.00024 33.8 0.7 79 75-158 484-566 (610)
108 PF11239 DUF3040: Protein of u 41.4 57 0.0012 21.1 3.9 23 107-129 9-31 (82)
109 PF14523 Syntaxin_2: Syntaxin- 41.3 1E+02 0.0022 20.3 6.6 56 80-136 4-59 (102)
110 PRK14859 tatA twin arginine tr 41.1 29 0.00062 21.8 2.3 14 142-155 6-19 (63)
111 PF05055 DUF677: Protein of un 41.0 1.1E+02 0.0024 25.6 6.4 22 103-124 153-174 (336)
112 PRK01470 tatA twin arginine tr 40.5 28 0.00061 20.9 2.1 12 143-154 6-17 (51)
113 COG5143 SNC1 Synaptobrevin/VAM 39.3 1.8E+02 0.0038 22.4 7.6 59 81-143 131-189 (190)
114 KOG1318|consensus 39.1 97 0.0021 26.7 5.8 101 2-119 238-346 (411)
115 smart00502 BBC B-Box C-termina 39.0 1.2E+02 0.0026 20.3 8.3 49 91-139 44-93 (127)
116 COG3883 Uncharacterized protei 38.9 2.1E+02 0.0046 23.2 9.4 63 74-136 33-95 (265)
117 PF11395 DUF2873: Protein of u 38.6 48 0.001 18.6 2.7 7 149-155 18-24 (43)
118 PF08651 DASH_Duo1: DASH compl 38.2 1.1E+02 0.0024 19.9 4.9 29 107-135 8-36 (78)
119 PF05739 SNARE: SNARE domain; 37.7 90 0.002 18.6 10.2 58 72-129 4-61 (63)
120 PRK09973 putative outer membra 37.5 1.2E+02 0.0027 20.1 6.7 36 78-113 37-72 (85)
121 PRK14860 tatA twin arginine tr 37.5 30 0.00064 21.8 2.0 14 142-155 6-19 (64)
122 PF00261 Tropomyosin: Tropomyo 37.3 1.6E+02 0.0035 22.9 6.6 64 74-137 10-73 (237)
123 PF02416 MttA_Hcf106: mttA/Hcf 36.9 30 0.00064 20.8 1.8 12 143-154 4-15 (53)
124 PF02009 Rifin_STEVOR: Rifin/s 36.6 34 0.00073 28.2 2.7 17 142-158 259-275 (299)
125 COG5509 Uncharacterized small 34.0 85 0.0018 19.6 3.5 36 2-40 28-63 (65)
126 PF06072 Herpes_US9: Alphaherp 33.9 84 0.0018 19.5 3.5 12 118-129 10-21 (60)
127 PF11336 DUF3138: Protein of u 33.6 3.3E+02 0.0072 23.9 8.2 26 3-28 26-51 (514)
128 PF00804 Syntaxin: Syntaxin; 33.5 1.3E+02 0.0029 19.3 7.4 63 74-136 9-71 (103)
129 PF13260 DUF4051: Protein of u 33.2 38 0.00083 20.1 1.8 9 141-149 5-13 (54)
130 PF04210 MtrG: Tetrahydrometha 32.8 1.4E+02 0.0029 19.2 6.2 27 109-135 14-40 (70)
131 PRK08032 fliD flagellar cappin 32.8 1.8E+02 0.004 25.2 6.7 66 78-143 391-456 (462)
132 PF09548 Spore_III_AB: Stage I 32.3 1.4E+02 0.0029 22.1 5.2 25 3-27 22-46 (170)
133 PF04923 Ninjurin: Ninjurin ; 31.9 1.5E+02 0.0033 20.4 4.9 33 125-157 23-56 (104)
134 TIGR01411 tatAE twin arginine- 31.7 48 0.001 19.4 2.1 12 143-154 5-16 (47)
135 PF13747 DUF4164: Domain of un 31.7 1.6E+02 0.0034 19.6 8.3 53 82-134 35-87 (89)
136 COG5416 Uncharacterized integr 31.5 32 0.0007 23.5 1.5 8 140-147 21-28 (98)
137 PF00523 Fusion_gly: Fusion gl 31.1 86 0.0019 27.7 4.4 19 2-20 48-66 (490)
138 PF11027 DUF2615: Protein of u 30.7 1.6E+02 0.0034 20.4 4.8 13 125-137 16-28 (103)
139 PF11057 Cortexin: Cortexin of 30.0 51 0.0011 21.5 2.2 11 147-157 35-45 (81)
140 PF11688 DUF3285: Protein of u 29.9 1.2E+02 0.0026 17.6 3.7 28 130-157 12-41 (45)
141 PF05546 She9_MDM33: She9 / Md 29.8 2.7E+02 0.0059 21.7 11.2 22 113-134 112-133 (207)
142 KOG0946|consensus 29.7 5E+02 0.011 24.8 9.0 64 67-130 659-722 (970)
143 PF12777 MT: Microtubule-bindi 29.3 3.3E+02 0.0071 22.5 8.4 61 76-136 232-292 (344)
144 PF04568 IATP: Mitochondrial A 29.2 1.4E+02 0.0031 20.4 4.4 27 91-117 74-100 (100)
145 PF06103 DUF948: Bacterial pro 28.4 1.7E+02 0.0037 19.0 9.7 50 73-125 27-76 (90)
146 PF08614 ATG16: Autophagy prot 28.4 2.6E+02 0.0056 21.0 9.2 68 70-137 107-174 (194)
147 PF04505 Dispanin: Interferon- 28.1 53 0.0012 21.4 2.1 19 139-157 62-80 (82)
148 PRK08307 stage III sporulation 27.9 2.6E+02 0.0055 20.8 6.9 26 3-28 23-48 (171)
149 PRK14861 tatA twin arginine tr 27.9 59 0.0013 20.2 2.1 13 143-155 8-20 (61)
150 PF00974 Rhabdo_glycop: Rhabdo 27.7 15 0.00032 32.4 -0.8 47 111-157 422-468 (501)
151 PF06009 Laminin_II: Laminin D 27.6 20 0.00044 25.7 0.0 58 76-133 49-109 (138)
152 PHA02675 ORF104 fusion protein 27.5 1.9E+02 0.0042 19.2 7.2 48 83-130 34-81 (90)
153 COG4575 ElaB Uncharacterized c 27.5 2.1E+02 0.0046 19.8 10.0 63 71-133 11-74 (104)
154 PF09548 Spore_III_AB: Stage I 27.2 2.6E+02 0.0056 20.6 7.1 29 88-116 107-136 (170)
155 PF04728 LPP: Lipoprotein leuc 27.1 1.6E+02 0.0034 18.1 8.0 48 80-134 4-51 (56)
156 TIGR02833 spore_III_AB stage I 26.9 2.7E+02 0.0058 20.7 6.9 26 3-28 22-47 (170)
157 KOG1666|consensus 26.8 3.2E+02 0.0069 21.5 11.3 64 70-137 119-186 (220)
158 PF03670 UPF0184: Uncharacteri 26.7 1.5E+02 0.0033 19.6 4.0 27 98-124 31-57 (83)
159 PHA03164 hypothetical protein; 26.4 74 0.0016 20.8 2.4 10 148-157 71-80 (88)
160 PF05791 Bacillus_HBL: Bacillu 26.1 2.8E+02 0.0062 20.8 9.1 61 78-138 102-162 (184)
161 PF11587 Prion_bPrPp: Major pr 26.1 47 0.001 17.5 1.2 9 144-152 8-16 (29)
162 PF10151 DUF2359: Uncharacteri 26.0 4.6E+02 0.0099 23.1 12.7 26 121-146 243-269 (469)
163 PF06084 Cytomega_TRL10: Cytom 26.0 51 0.0011 23.3 1.8 19 139-157 59-77 (150)
164 PLN03160 uncharacterized prote 25.8 33 0.00071 26.7 0.9 20 138-157 33-52 (219)
165 PF06120 Phage_HK97_TLTM: Tail 25.7 3.8E+02 0.0083 22.1 7.5 24 68-91 84-107 (301)
166 PF06837 Fijivirus_P9-2: Fijiv 25.7 1.3E+02 0.0027 23.3 3.9 15 140-154 79-93 (214)
167 TIGR02833 spore_III_AB stage I 25.5 2.1E+02 0.0045 21.3 5.2 62 88-158 107-169 (170)
168 PF15145 DUF4577: Domain of un 25.0 69 0.0015 22.6 2.3 16 143-158 65-80 (128)
169 PF11669 WBP-1: WW domain-bind 25.0 76 0.0017 21.7 2.5 9 140-148 22-30 (102)
170 PF12718 Tropomyosin_1: Tropom 24.8 2.7E+02 0.0059 20.1 9.7 64 75-138 45-111 (143)
171 PF07432 Hc1: Histone H1-like 24.8 2.6E+02 0.0056 19.8 6.1 45 84-135 2-46 (123)
172 KOG4677|consensus 24.6 1.8E+02 0.0038 25.7 5.0 49 108-156 493-547 (554)
173 PTZ00046 rifin; Provisional 24.5 3.5E+02 0.0075 23.0 6.7 17 142-158 318-334 (358)
174 PRK10778 dksA RNA polymerase-b 24.5 2.9E+02 0.0062 20.3 7.6 31 61-91 32-62 (151)
175 PF02520 DUF148: Domain of unk 24.2 2.4E+02 0.0051 19.1 6.7 50 69-118 48-97 (113)
176 smart00787 Spc7 Spc7 kinetocho 24.2 4.1E+02 0.0089 21.9 10.4 56 80-135 205-260 (312)
177 PRK15396 murein lipoprotein; P 24.2 2.1E+02 0.0046 18.6 6.9 32 79-110 39-70 (78)
178 PF03408 Foamy_virus_ENV: Foam 24.0 96 0.0021 29.2 3.5 24 129-152 46-71 (981)
179 PF10779 XhlA: Haemolysin XhlA 23.5 2E+02 0.0043 18.0 7.7 6 130-135 50-55 (71)
180 PF05103 DivIVA: DivIVA protei 23.4 1.6E+02 0.0035 20.2 4.1 53 76-128 22-74 (131)
181 TIGR02132 phaR_Bmeg polyhydrox 23.4 3.4E+02 0.0074 20.7 9.0 53 82-134 82-134 (189)
182 PRK08307 stage III sporulation 23.3 2.1E+02 0.0045 21.3 4.8 62 88-158 108-170 (171)
183 PF03579 SHP: Small hydrophobi 23.3 91 0.002 19.3 2.3 7 140-146 15-21 (64)
184 TIGR01477 RIFIN variant surfac 23.2 2.3E+02 0.005 24.0 5.4 17 142-158 313-329 (353)
185 PHA02909 hypothetical protein; 23.0 43 0.00093 20.6 0.8 13 140-153 32-44 (72)
186 PF09125 COX2-transmemb: Cytoc 22.9 1.4E+02 0.0031 16.6 2.8 7 135-141 11-17 (38)
187 PRK13664 hypothetical protein; 22.9 1.2E+02 0.0025 18.8 2.7 11 143-153 9-19 (62)
188 PF05440 MtrB: Tetrahydrometha 22.9 51 0.0011 22.5 1.3 6 146-151 84-89 (97)
189 PF10046 BLOC1_2: Biogenesis o 22.8 2.5E+02 0.0053 18.9 8.8 48 74-125 37-84 (99)
190 PF02970 TBCA: Tubulin binding 22.8 2.4E+02 0.0052 18.7 5.4 37 101-137 42-78 (90)
191 PF09577 Spore_YpjB: Sporulati 22.7 3.9E+02 0.0085 21.1 7.1 55 100-154 150-212 (232)
192 PF06422 PDR_CDR: CDR ABC tran 22.7 76 0.0016 21.6 2.1 17 140-156 49-65 (103)
193 COG1459 PulF Type II secretory 22.5 4.3E+02 0.0093 22.6 7.1 17 142-158 167-183 (397)
194 PHA02639 EEV host range protei 22.4 25 0.00055 28.8 -0.3 6 144-149 258-263 (295)
195 PHA03240 envelope glycoprotein 22.0 79 0.0017 25.0 2.3 19 138-156 213-231 (258)
196 PF15176 LRR19-TM: Leucine-ric 21.9 1E+02 0.0022 21.3 2.5 21 137-157 14-34 (102)
197 KOG1434|consensus 21.7 1.2E+02 0.0027 24.8 3.4 27 2-28 232-258 (335)
198 PHA02947 S-S bond formation pa 21.7 74 0.0016 24.9 2.1 17 141-157 178-194 (215)
199 PF02442 L1R_F9L: Lipid membra 21.7 29 0.00062 26.8 -0.2 19 140-158 181-200 (202)
200 PHA03231 glycoprotein BALF4; P 21.6 3.7E+02 0.008 25.5 6.8 40 61-100 630-680 (829)
201 PF13608 Potyvirid-P3: Protein 21.3 37 0.00081 29.4 0.5 44 73-118 356-400 (445)
202 PF00015 MCPsignal: Methyl-acc 21.2 3.4E+02 0.0074 19.9 11.8 51 78-128 134-184 (213)
203 TIGR03715 KxYKxGKxW KxYKxGKxW 20.9 1.4E+02 0.003 15.4 2.5 17 139-155 9-25 (29)
204 TIGR03063 srtB_target sortase 20.9 1.5E+02 0.0032 15.6 2.6 15 141-155 9-23 (29)
205 PRK09458 pspB phage shock prot 20.6 1.1E+02 0.0024 19.9 2.4 13 145-157 11-23 (75)
206 PRK10803 tol-pal system protei 20.5 4.4E+02 0.0096 20.9 8.1 47 68-114 50-100 (263)
207 PF06667 PspB: Phage shock pro 20.5 1.2E+02 0.0025 19.7 2.6 12 145-156 11-22 (75)
208 PF07195 FliD_C: Flagellar hoo 20.4 4.1E+02 0.009 20.6 7.6 65 73-137 172-237 (239)
209 TIGR03024 arch_pef_cterm PEF-C 20.2 1.5E+02 0.0032 15.3 2.4 9 143-151 8-16 (26)
No 1
>KOG3202|consensus
Probab=99.96 E-value=7.3e-28 Score=187.97 Aligned_cols=154 Identities=24% Similarity=0.435 Sum_probs=129.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCC-CChHHhhhhhhcCCCCCCCCCCCCccCccccCC-HHHHHHHHHHHHHHHHH
Q psy7328 2 SSFERRQRLLEQLQSSSVKITNMYNNRP-SYSAQRNELFADVGTTGWGDDASDEESPLLGAN-IADVREQQQMMIAAQDQ 79 (159)
Q Consensus 2 ~E~~rR~~~v~~L~~~~~~l~~~~~~~~-~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~q~~~~~eqD~ 79 (159)
.|+.+|+.++..+++++.+++..|.... .+...|..+++...+ + +..+...+..+++ .+...++|++++++||+
T Consensus 77 ~El~~R~~~i~~lr~q~~~~~~~~~~~~~~~~~~r~~l~~~~~~-~---~~~~~~~~~~~~D~v~~~~~~qqqm~~eQDe 152 (235)
T KOG3202|consen 77 FELSRRRRFIDNLRTQLRQMKSKMAMSGFANSNIRDILLGPEKS-P---NLDEAMSRASGLDNVQEIVQLQQQMLQEQDE 152 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhhcCCCCC-C---chhhhHHHhhccCcHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999998632 223457777764221 1 1122333344578 59999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhC
Q psy7328 80 GLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVLVATL 159 (159)
Q Consensus 80 ~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~~iI~~L~v~iv~l~~~ 159 (159)
+||.|+++|+++|++|..||+|+++|+.+||++++.||.|..+|.++++++.++.+..++|.+||+|++|+++++++++|
T Consensus 153 ~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~~il~l~~~~~lvv~i 232 (235)
T KOG3202|consen 153 GLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQWCAILLLVGLLLLVVII 232 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888899999998888877766653
No 2
>KOG3385|consensus
Probab=99.60 E-value=1.4e-14 Score=100.72 Aligned_cols=81 Identities=20% Similarity=0.379 Sum_probs=68.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCC-chHHHHHHHHHHHH
Q psy7328 75 AAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDAT-CGYWVVIIVLFIAN 153 (159)
Q Consensus 75 ~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~-~~~~~iI~~L~v~i 153 (159)
.|.|+.++.|.+.|..||.++.+|++|++.||++||.|++++|.|...|.+++.+++.+.+.++. -.+|++++++++++
T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg~~l~~~m~~f~lV~~f 111 (118)
T KOG3385|consen 32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSGISLLCWMAVFSLVAFF 111 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999988432 23344444444444
Q ss_pred HH
Q psy7328 154 VL 155 (159)
Q Consensus 154 v~ 155 (159)
|+
T Consensus 112 i~ 113 (118)
T KOG3385|consen 112 IL 113 (118)
T ss_pred Hh
Confidence 43
No 3
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.51 E-value=1.7e-13 Score=86.68 Aligned_cols=62 Identities=24% Similarity=0.463 Sum_probs=59.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhc
Q psy7328 76 AQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD 137 (159)
Q Consensus 76 eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~ 137 (159)
++|+.|+.|+.+|.+|+++|.+|+.||++|+++||+|+++|+.|...+++++++|+++.++.
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~ 62 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999999999999999998764
No 4
>KOG0809|consensus
Probab=99.41 E-value=2.1e-12 Score=102.97 Aligned_cols=152 Identities=14% Similarity=0.148 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCC-------CChHHhhhhhhcCCCCCCCCCCCCccCccccCCH--HHHH--HHHH
Q psy7328 3 SFERRQRLLEQLQSSSVKITNMYNNRP-------SYSAQRNELFADVGTTGWGDDASDEESPLLGANI--ADVR--EQQQ 71 (159)
Q Consensus 3 E~~rR~~~v~~L~~~~~~l~~~~~~~~-------~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--q~q~ 71 (159)
|.-=|+++...+..+++.+...|+..+ ...+.+..-+.. +..+....+.+++-. ++.+ ++++ +...
T Consensus 134 e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~-~~~~~~~~~dd~d~~--~~~~qe~ql~~~e~~~ 210 (305)
T KOG0809|consen 134 ERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYED-SLDNTVDLPDDEDFS--DRTFQEQQLMLFENNE 210 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhh-hccccccCcchhhhh--hhhHHHHHHHHHhcch
Confidence 344567888888889999988888643 122222221211 111111111111111 1122 1111 1223
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q psy7328 72 MMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFI 151 (159)
Q Consensus 72 ~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~~iI~~L~v 151 (159)
.+..+.++.+..+..+|..|.+|+.+++.-|-+|+.++|+||.++++|..+++.|.+.|.|+..+.+..+.++||++|++
T Consensus 211 ~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~l 290 (305)
T KOG0809|consen 211 EVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLTL 290 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHHH
Confidence 34456788899999999999999999999999999999999999999999999999999999988765555555555554
Q ss_pred HHHHHH
Q psy7328 152 ANVLVA 157 (159)
Q Consensus 152 ~iv~l~ 157 (159)
++|+++
T Consensus 291 ~ii~ll 296 (305)
T KOG0809|consen 291 LIIALL 296 (305)
T ss_pred HHHHHH
Confidence 444443
No 5
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.29 E-value=5.1e-11 Score=94.36 Aligned_cols=92 Identities=20% Similarity=0.377 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcC---CchHH
Q psy7328 67 REQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDA---TCGYW 143 (159)
Q Consensus 67 ~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~---~~~~~ 143 (159)
..+|+-+..+.|+.+..|+.+|..+.+|+.+++.-|.+|+.+.|+|+.++++|...++.|.+.|.++..+.+ .|+++
T Consensus 183 ~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~ 262 (283)
T COG5325 183 LEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFY 262 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhh
Confidence 466777888999999999999999999999999999999999999999999999999999999999997654 57777
Q ss_pred HHHHHHHHHHHHHHh
Q psy7328 144 VVIIVLFIANVLVAT 158 (159)
Q Consensus 144 ~iI~~L~v~iv~l~~ 158 (159)
|++++++|++|++.+
T Consensus 263 ~Llil~vv~lfv~l~ 277 (283)
T COG5325 263 LLLILLVVLLFVSLI 277 (283)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777776666665543
No 6
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.27 E-value=3.2e-11 Score=74.91 Aligned_cols=59 Identities=29% Similarity=0.522 Sum_probs=56.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHH
Q psy7328 75 AAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSI 133 (159)
Q Consensus 75 ~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~ 133 (159)
.++++.++.|+..+.+++.++.+|+.+|..|+++||+|+++++.+...++.+.+++.++
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999999999999999999863
No 7
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.26 E-value=5e-11 Score=75.24 Aligned_cols=64 Identities=25% Similarity=0.453 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHH
Q psy7328 70 QQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSI 133 (159)
Q Consensus 70 q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~ 133 (159)
+.+++.++|+.++.|+..+.++++++.+|+.+|..|+++||+++++++.+...++.+.++++++
T Consensus 3 ~~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 3 ADQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 4567899999999999999999999999999999999999999999999999999999998763
No 8
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=99.22 E-value=7.8e-10 Score=88.00 Aligned_cols=95 Identities=19% Similarity=0.355 Sum_probs=80.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCC
Q psy7328 60 GANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDAT 139 (159)
Q Consensus 60 ~~~~~~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~ 139 (159)
..+.+..+++|+. .||+-.+.|..-...||+.+..+++-|...+..|+.....+|+....|+.+..+++...+++.+
T Consensus 151 ~~~~e~~l~~~~~---~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~ 227 (251)
T PF09753_consen 151 QASLEKILQHHRN---LQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWG 227 (251)
T ss_pred cccHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3556677777775 7888899999999999999999999999999999999999999999999999999999887777
Q ss_pred chHHHHHHHHHHHHHHHH
Q psy7328 140 CGYWVVIIVLFIANVLVA 157 (159)
Q Consensus 140 ~~~~~iI~~L~v~iv~l~ 157 (159)
|++|++|+++++++|+++
T Consensus 228 ~~~~~~i~~v~~~Fi~mv 245 (251)
T PF09753_consen 228 CWTWLMIFVVIIVFIMMV 245 (251)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 877877666555544333
No 9
>KOG0810|consensus
Probab=99.13 E-value=3.1e-10 Score=92.09 Aligned_cols=64 Identities=14% Similarity=0.290 Sum_probs=58.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcC
Q psy7328 75 AAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDA 138 (159)
Q Consensus 75 ~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~ 138 (159)
++.-..+-.|..++..|++++.+|...|+.|++++|+|+.+|.++...+..+...++++..+.+
T Consensus 202 q~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qk 265 (297)
T KOG0810|consen 202 QERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQK 265 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678999999999999999999999999999999999999999999999999998887654
No 10
>KOG0811|consensus
Probab=99.12 E-value=1.1e-09 Score=87.57 Aligned_cols=71 Identities=23% Similarity=0.321 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcC
Q psy7328 68 EQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDA 138 (159)
Q Consensus 68 q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~ 138 (159)
.++..++++.++.+..|+..|..+.+|+.+++.-|.+|++++|.|+++|++|...+..++..|.++.++..
T Consensus 169 ~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~ 239 (269)
T KOG0811|consen 169 EYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQR 239 (269)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788899999999999999999999999999999999999999999999999999999999998654
No 11
>KOG3065|consensus
Probab=99.01 E-value=1.2e-09 Score=87.49 Aligned_cols=60 Identities=27% Similarity=0.572 Sum_probs=57.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHH
Q psy7328 75 AAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL 134 (159)
Q Consensus 75 ~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~ 134 (159)
+++|+.|++|+..+++||.||.+||.||+.||+.||+|++.+|+...++..+++++++++
T Consensus 214 deiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kLl 273 (273)
T KOG3065|consen 214 DEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKLL 273 (273)
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhcC
Confidence 479999999999999999999999999999999999999999999999999999999874
No 12
>KOG0812|consensus
Probab=98.86 E-value=1.1e-07 Score=75.98 Aligned_cols=81 Identities=16% Similarity=0.264 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcC-C
Q psy7328 68 EQQQMMIAAQDQG-------LEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDA-T 139 (159)
Q Consensus 68 q~q~~~~~eqD~~-------Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~-~ 139 (159)
++|..+++++|++ +..++.+|.+|.+|+..+..-|.+|.+++-+||++||.+...+..|...|.+.....+ +
T Consensus 209 qqQm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSN 288 (311)
T KOG0812|consen 209 QQQMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSN 288 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccc
Confidence 5666677777654 6789999999999999999999999999999999999999999999999998887655 5
Q ss_pred chHHHHHHH
Q psy7328 140 CGYWVVIIV 148 (159)
Q Consensus 140 ~~~~~iI~~ 148 (159)
.|+++=||.
T Consensus 289 RwLmvkiF~ 297 (311)
T KOG0812|consen 289 RWLMVKIFG 297 (311)
T ss_pred hHHHHHHHH
Confidence 555554443
No 13
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=98.49 E-value=2.4e-06 Score=66.72 Aligned_cols=63 Identities=13% Similarity=0.224 Sum_probs=57.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhc
Q psy7328 75 AAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD 137 (159)
Q Consensus 75 ~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~ 137 (159)
+..-..+-.|..++..|-+++.+|.++|-+|.++.|-|+.++..++..+..++..+.+..+..
T Consensus 181 q~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avksa 243 (280)
T COG5074 181 QARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSA 243 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHH
Confidence 344567899999999999999999999999999999999999999999999999998888754
No 14
>KOG2678|consensus
Probab=98.16 E-value=4.9e-05 Score=58.94 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhc-CCch
Q psy7328 63 IADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD-ATCG 141 (159)
Q Consensus 63 ~~~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~-~~~~ 141 (159)
+++.++.|+-+ |.+-.+.|..-++-+|..+.+.++-+++.|+.+......+|.....|..+..++.+-.++. +.|.
T Consensus 142 ~dq~l~~q~~l---QeeLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf 218 (244)
T KOG2678|consen 142 VDQQLEDQDTL---QEELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWF 218 (244)
T ss_pred HHHHHHhhhHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHH
Confidence 44444444443 3455667788888999999999999999999999999999999999999999999988876 4677
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy7328 142 YWVVIIVLFIANVLVAT 158 (159)
Q Consensus 142 ~~~iI~~L~v~iv~l~~ 158 (159)
+|.+|++.|+.+|..|+
T Consensus 219 ~~~miI~v~~sFVsMil 235 (244)
T KOG2678|consen 219 YITMIIFVILSFVSMIL 235 (244)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777666665554443
No 15
>KOG1666|consensus
Probab=98.16 E-value=0.00015 Score=55.92 Aligned_cols=64 Identities=13% Similarity=0.239 Sum_probs=55.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcC
Q psy7328 75 AAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDA 138 (159)
Q Consensus 75 ~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~ 138 (159)
..--+-|..-+.++...-+||..|-++|..|.+.|.+--+-.-.|++.|.++.+-++.+.++.-
T Consensus 131 eRst~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~ 194 (220)
T KOG1666|consen 131 ERSTDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLI 194 (220)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHH
Confidence 3334556677778888999999999999999999999999999999999999999999997654
No 16
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=97.58 E-value=0.0032 Score=42.58 Aligned_cols=80 Identities=8% Similarity=0.150 Sum_probs=59.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHHH
Q psy7328 78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDA-TCGYWVVIIVLFIANVLV 156 (159)
Q Consensus 78 D~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~-~~~~~~iI~~L~v~iv~l 156 (159)
.+.|......+..--+.+..-.++|.+|++.|..+++..+...+.|..+.+-++++.+... +.+++.+.+++|++.|+.
T Consensus 7 T~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~y 86 (92)
T PF03908_consen 7 TESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVLY 86 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4456666666666667778888899999999999999999999999999999999998765 344333333444444433
Q ss_pred H
Q psy7328 157 A 157 (159)
Q Consensus 157 ~ 157 (159)
|
T Consensus 87 I 87 (92)
T PF03908_consen 87 I 87 (92)
T ss_pred H
Confidence 3
No 17
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.29 E-value=0.0037 Score=41.82 Aligned_cols=56 Identities=9% Similarity=0.258 Sum_probs=26.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhH---HhhhHHHHHHHHHHHHHH
Q psy7328 79 QGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERM---DHTNVSIQRETNQVTSIL 134 (159)
Q Consensus 79 ~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~v---d~t~~~l~~~~~~l~~~~ 134 (159)
+.+..+...+...+++-..=-+.+-+-++-|+.|.+.. .......++..+++++-.
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~ 61 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKM 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34455555555555443333334444445555555443 334444455555555444
No 18
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=97.28 E-value=0.0079 Score=37.91 Aligned_cols=62 Identities=8% Similarity=0.272 Sum_probs=56.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhh
Q psy7328 75 AAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQ 136 (159)
Q Consensus 75 ~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~ 136 (159)
....+.|+.-...+....++|.++..+|..|++.|..+...++.+...+..+.+-++.+.++
T Consensus 4 ~~e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR 65 (66)
T PF12352_consen 4 LRESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR 65 (66)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence 34455788889999999999999999999999999999999999999999999999988754
No 19
>KOG0860|consensus
Probab=97.13 E-value=0.011 Score=41.68 Aligned_cols=59 Identities=8% Similarity=0.290 Sum_probs=26.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhh---hHHHHHHHHHHHHHHhhcCCchHHHHH
Q psy7328 76 AQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHT---NVSIQRETNQVTSILTQDATCGYWVVI 146 (159)
Q Consensus 76 eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t---~~~l~~~~~~l~~~~~~~~~~~~~~iI 146 (159)
+-|+-.+-+...|...- +-.+-||+|++..|.- .+.-+++..++++-+-. .+|.+++|+
T Consensus 37 QvdeVv~IMr~NV~KVl-----------ER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wW-kn~Km~~il 98 (116)
T KOG0860|consen 37 QVDEVVDIMRENVEKVL-----------ERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWW-KNCKMRIIL 98 (116)
T ss_pred HHHHHHHHHHHhHHHHH-----------HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34555555555544433 2233455555554443 33444444444443332 234444433
No 20
>KOG3894|consensus
Probab=97.10 E-value=0.019 Score=46.85 Aligned_cols=84 Identities=11% Similarity=0.133 Sum_probs=68.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q psy7328 75 AAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANV 154 (159)
Q Consensus 75 ~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~~iI~~L~v~iv 154 (159)
.+|.+....+...+-.+-.+=.-+.+=|-.|..-+|.|.+.+..|+..++.++..++++...++..+-|.++++|+..++
T Consensus 228 n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf~ 307 (316)
T KOG3894|consen 228 NELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSFS 307 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 45566677777777777777788888999999999999999999999999999999999998887777777666665555
Q ss_pred HHHh
Q psy7328 155 LVAT 158 (159)
Q Consensus 155 ~l~~ 158 (159)
++++
T Consensus 308 lLFl 311 (316)
T KOG3894|consen 308 LLFL 311 (316)
T ss_pred HHHH
Confidence 5543
No 21
>KOG3202|consensus
Probab=96.94 E-value=0.039 Score=43.68 Aligned_cols=94 Identities=10% Similarity=0.093 Sum_probs=76.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCc
Q psy7328 61 ANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATC 140 (159)
Q Consensus 61 ~~~~~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~ 140 (159)
...+.+++.|..-++.....+..+.+......+=-..=+.-++....-+|.++..++++..++...++ .....+.|
T Consensus 141 ~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~----~~s~~~~~ 216 (235)
T KOG3202|consen 141 QLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR----MASQCSQW 216 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhccccch
Confidence 34566678888888888888888877777777666666778889999999999999999999988775 56788899
Q ss_pred hHHHHHHHHHHHHHHHHh
Q psy7328 141 GYWVVIIVLFIANVLVAT 158 (159)
Q Consensus 141 ~~~~iI~~L~v~iv~l~~ 158 (159)
|...++|++++++|++++
T Consensus 217 ~~il~l~~~~~lvv~i~~ 234 (235)
T KOG3202|consen 217 CAILLLVGLLLLVVIIFI 234 (235)
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 999988888888887775
No 22
>KOG3208|consensus
Probab=96.88 E-value=0.12 Score=40.38 Aligned_cols=61 Identities=7% Similarity=0.142 Sum_probs=54.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcC
Q psy7328 78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDA 138 (159)
Q Consensus 78 D~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~ 138 (159)
...++.-...+.++-.+|.+..+-+..|+.+|..+...|..+..++-..+.-+.++..+.+
T Consensus 148 ~~~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkr 208 (231)
T KOG3208|consen 148 HDHINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKR 208 (231)
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 3467777788888899999999999999999999999999999999999999999886544
No 23
>KOG0810|consensus
Probab=96.82 E-value=0.017 Score=47.24 Aligned_cols=77 Identities=9% Similarity=0.200 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHHH
Q psy7328 65 DVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWV 144 (159)
Q Consensus 65 ~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~~ 144 (159)
++..++. -+.+.+..+..|+..-..+..+-..=|+.|+.=..-..+-.+.|+++.+.++.|.+. -+++..|.++|
T Consensus 200 Eiq~Rh~-~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~----qkkaRK~k~i~ 274 (297)
T KOG0810|consen 200 EIQERHD-EIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKY----QKKARKWKIII 274 (297)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhceeee
Confidence 3334443 567889999999999999998888888889888888888888889999999888644 44444443333
Q ss_pred HH
Q psy7328 145 VI 146 (159)
Q Consensus 145 iI 146 (159)
+|
T Consensus 275 ii 276 (297)
T KOG0810|consen 275 II 276 (297)
T ss_pred eh
Confidence 33
No 24
>KOG3251|consensus
Probab=96.76 E-value=0.055 Score=42.02 Aligned_cols=118 Identities=9% Similarity=0.100 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHhcCCCC-------ChHHhhhhhhcCCCCCCCCCCCCccCccccCCHHHHHHHHHHHHHHHHHhHHH
Q psy7328 11 LEQLQSSSVKITNMYNNRPS-------YSAQRNELFADVGTTGWGDDASDEESPLLGANIADVREQQQMMIAAQDQGLEA 83 (159)
Q Consensus 11 v~~L~~~~~~l~~~~~~~~~-------~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~q~~~~~eqD~~Ld~ 83 (159)
+.+|..++..++...+...+ ...+|.+|++. +++++++.-.-| . ++.++. +..|..
T Consensus 71 ~dQl~~d~~~l~~~l~~~~~R~~~r~~~~~er~~lL~~----~~~~~~~~~~~~---~--D~el~~--------~d~l~~ 133 (213)
T KOG3251|consen 71 VDQLLEDVEHLQTSLRTSMNRNNRREQQARERVELLDR----RFTNGATGTSIP---F--DEELQE--------NDSLKR 133 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC----CCCCCCccCCCc---c--hHHHHh--------hhHHHH
Confidence 77788887777776654321 12235555543 232222111111 1 222222 334566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcC-Cch-HHHH
Q psy7328 84 LSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDA-TCG-YWVV 145 (159)
Q Consensus 84 l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~-~~~-~~~i 145 (159)
-+..+..+-..|.+|=+-+.+|+..|-.....+-.....|.-.+.-|+-+.+... +|+ +|+-
T Consensus 134 s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G 197 (213)
T KOG3251|consen 134 SHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGG 197 (213)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHH
Confidence 6666677777899999999999999999999999999999888888888877664 444 3443
No 25
>KOG0811|consensus
Probab=96.60 E-value=0.078 Score=42.78 Aligned_cols=74 Identities=8% Similarity=0.154 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhh
Q psy7328 63 IADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQ 136 (159)
Q Consensus 63 ~~~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~ 136 (159)
...+.+...+-+.+.+..+-.+......|..|-..=|+-|+.=..-++....+|..+...|.+|.+.=++..+.
T Consensus 171 ~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~ 244 (269)
T KOG0811|consen 171 QLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKK 244 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 44555666778888899999999999999999999999999999999999999999999999998665554433
No 26
>KOG0809|consensus
Probab=95.43 E-value=0.26 Score=40.14 Aligned_cols=93 Identities=11% Similarity=0.184 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCch
Q psy7328 62 NIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCG 141 (159)
Q Consensus 62 ~~~~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~ 141 (159)
.+++......+.+.+--+.+..|......|..+-.+=|.-|+.=.--++...-.++.+...|.+|. ..-++++.++
T Consensus 208 ~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe----~yQk~~~k~~ 283 (305)
T KOG0809|consen 208 NNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAE----RYQKRNKKMK 283 (305)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHH----HHHhcCCceE
Confidence 456677777788888899999999999999999999999999888888999999999998888877 4566778877
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy7328 142 YWVVIIVLFIANVLVAT 158 (159)
Q Consensus 142 ~~~iI~~L~v~iv~l~~ 158 (159)
++|+.++++|+++++++
T Consensus 284 ~i~~L~l~ii~llvlli 300 (305)
T KOG0809|consen 284 VILMLTLLIIALLVLLI 300 (305)
T ss_pred ehHHHHHHHHHHHHHHH
Confidence 76666666666555544
No 27
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=93.83 E-value=1.1 Score=28.71 Aligned_cols=55 Identities=20% Similarity=0.372 Sum_probs=34.2
Q ss_pred HHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Q psy7328 98 ISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANV 154 (159)
Q Consensus 98 i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~~iI~~L~v~iv 154 (159)
+...++.+.+-++.++..-+.....+.....++.++.... +| .|-+|+..+|..|
T Consensus 11 ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~-kW-~~r~iiGaiI~~i 65 (71)
T PF10779_consen 11 IETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNT-KW-IWRTIIGAIITAI 65 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHH
Confidence 3445555666677777777777778888888888876553 34 4444444444333
No 28
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=93.62 E-value=1.9 Score=34.88 Aligned_cols=88 Identities=9% Similarity=0.181 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHHHH-
Q psy7328 67 REQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVV- 145 (159)
Q Consensus 67 ~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~~i- 145 (159)
.....+.+....+.+-.|......|..+-..=|.-|+.=..-|+....++..|...|.+|...=++..+. +-|++.++
T Consensus 190 ~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~-~~~~Llil~ 268 (283)
T COG5325 190 ITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKC-RFYLLLILL 268 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccc-hhhHHHHHH
Confidence 4556667778888888888888888888888888888888888999999999999999999888886555 55555444
Q ss_pred HHHHHHHHHH
Q psy7328 146 IIVLFIANVL 155 (159)
Q Consensus 146 I~~L~v~iv~ 155 (159)
|+++|+++++
T Consensus 269 vv~lfv~l~~ 278 (283)
T COG5325 269 VVLLFVSLIK 278 (283)
T ss_pred HHHHHHHHHH
Confidence 4444544443
No 29
>KOG0860|consensus
Probab=93.33 E-value=2 Score=30.31 Aligned_cols=62 Identities=19% Similarity=0.285 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHH
Q psy7328 61 ANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRET 127 (159)
Q Consensus 61 ~~~~~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~ 127 (159)
..++.+.+.|.|+=+--+-.-+.+...+.|--.++ ||++=.+.|..-...+.++..+|++-+
T Consensus 26 ~~~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~-----~L~drad~L~~~as~F~~~A~klkrk~ 87 (116)
T KOG0860|consen 26 TANDKLQQTQAQVDEVVDIMRENVEKVLERGEKLD-----ELDDRADQLQAGASQFEKTAVKLKRKM 87 (116)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666665544444444455555555555443 677777778888888999999888754
No 30
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=93.12 E-value=1.1 Score=29.25 Aligned_cols=61 Identities=11% Similarity=0.194 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHhhhhHHHHHHhHHhhhHHHH
Q psy7328 64 ADVREQQQMMIAAQDQGLEALSKVISRQKNIALT---ISNEVDVQNDLVDDITERMDHTNVSIQ 124 (159)
Q Consensus 64 ~~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~---i~~El~~Q~~~Ld~l~~~vd~t~~~l~ 124 (159)
+.++-.=++-+++-|+..+.|...|..++.-... ++.-++.|...|+.++..|...++-|.
T Consensus 3 ~NILl~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 3 QNILLVIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4556666777888999999999999999887666 888899999999999998888777654
No 31
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=92.46 E-value=2.1 Score=28.27 Aligned_cols=49 Identities=8% Similarity=0.199 Sum_probs=28.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHH
Q psy7328 78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRET 127 (159)
Q Consensus 78 D~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~ 127 (159)
++--+.+...+..+-+-+..+. +++...+-|.+-...+.+...++++..
T Consensus 13 ~~v~~im~~Ni~~ll~Rge~L~-~L~~kt~~L~~~a~~F~k~a~~l~r~~ 61 (89)
T PF00957_consen 13 EEVKNIMRENIDKLLERGEKLE-ELEDKTEELSDNAKQFKKNAKKLKRKM 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCchHH-HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4444444444444444454443 455666666777777777777776655
No 32
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=92.34 E-value=3.3 Score=32.92 Aligned_cols=60 Identities=13% Similarity=0.282 Sum_probs=34.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHH
Q psy7328 74 IAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSI 133 (159)
Q Consensus 74 ~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~ 133 (159)
+...++.+-.|..-..-..++-..=..-|+-=++-+.+...+|+.....+.+|-+..++.
T Consensus 187 ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaa 246 (280)
T COG5074 187 IKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAA 246 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHH
Confidence 344444444444433333333333334455555566677788888888888888775443
No 33
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=91.41 E-value=2.3 Score=29.35 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=38.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHH
Q psy7328 76 AQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQR 125 (159)
Q Consensus 76 eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~ 125 (159)
.|.+.++.|...|..+-+.=.....|++.|++.|+.|...+...+.||..
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~ 99 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66777778888888877777777888888888888888777777766653
No 34
>KOG3065|consensus
Probab=89.89 E-value=4.9 Score=32.61 Aligned_cols=78 Identities=12% Similarity=0.181 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhc
Q psy7328 61 ANIADVREQQQMMIAAQDQGLEALSKV---ISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD 137 (159)
Q Consensus 61 ~~~~~~~q~q~~~~~eqD~~Ld~l~~~---v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~ 137 (159)
..++....+++.+-...++.++.-..+ +..-+..|...-.+|.+|.++|++++.++|.....++.+-+.+..+-+-.
T Consensus 58 ~~~~~~~~l~~e~~~~~~eSl~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~~~ 137 (273)
T KOG3065|consen 58 EEDEEVDELEQEIESTAQESLKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKGLF 137 (273)
T ss_pred cchHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 445555555555555556666554443 45577889999999999999999999999999999999999998877655
Q ss_pred C
Q psy7328 138 A 138 (159)
Q Consensus 138 ~ 138 (159)
+
T Consensus 138 g 138 (273)
T KOG3065|consen 138 G 138 (273)
T ss_pred c
Confidence 4
No 35
>KOG0812|consensus
Probab=87.64 E-value=9.4 Score=31.21 Aligned_cols=62 Identities=11% Similarity=0.195 Sum_probs=51.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHH
Q psy7328 71 QMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTS 132 (159)
Q Consensus 71 ~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~ 132 (159)
-..|+..+-.+.+|++.-..|-.+-..=++-+..=....|+.+-+++.+...|-+...++..
T Consensus 226 ~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSS 287 (311)
T KOG0812|consen 226 AKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSS 287 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhcc
Confidence 34566778888888888888888888878888877888999999999999999888877754
No 36
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=87.59 E-value=8.5 Score=27.61 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=47.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHh
Q psy7328 77 QDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILT 135 (159)
Q Consensus 77 qD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~ 135 (159)
.-..|+.+...+....++...|.+||.+=..-++++..+++..+..+..--.++..+-.
T Consensus 66 LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567888888888899999999999888888888888888888888877777766543
No 37
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=86.83 E-value=7.7 Score=26.37 Aligned_cols=69 Identities=12% Similarity=0.140 Sum_probs=43.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhc-CCchHHHH
Q psy7328 76 AQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD-ATCGYWVV 145 (159)
Q Consensus 76 eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~-~~~~~~~i 145 (159)
++|.-+..|...-..+..--..|.+-+..|....+.++-.+|..... +...++.++-..+. ..+.+|++
T Consensus 8 e~e~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~re-Re~dee~k~~n~Knir~~Kmwil 77 (98)
T PF11166_consen 8 EHEWRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINRE-REEDEENKKKNDKNIRDIKMWIL 77 (98)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHH
Confidence 55556666666666666666667777778888888888887774332 33444555555443 34667764
No 38
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=86.81 E-value=13 Score=29.38 Aligned_cols=66 Identities=8% Similarity=0.128 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhc----CCchHHHHHHHHHHHHHH
Q psy7328 90 RQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD----ATCGYWVVIIVLFIANVL 155 (159)
Q Consensus 90 ~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~----~~~~~~~iI~~L~v~iv~ 155 (159)
.+-.+|..+.+-...=+..|.+=...++++...+.+....++....+- +.++.|.+.+++++++++
T Consensus 171 em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~~v~~~ 240 (251)
T PF09753_consen 171 EMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIFVVIIV 240 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 344455555555554456666667777788888877777777666533 345554444444433333
No 39
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=85.69 E-value=0.62 Score=40.72 Aligned_cols=28 Identities=4% Similarity=0.226 Sum_probs=14.3
Q ss_pred HHHHHHhHHhhhHHHHHHHHHHHHHHhh
Q psy7328 109 VDDITERMDHTNVSIQRETNQVTSILTQ 136 (159)
Q Consensus 109 Ld~l~~~vd~t~~~l~~~~~~l~~~~~~ 136 (159)
|+.++..++++.+.|++.++-|..+...
T Consensus 440 L~~vn~sL~~A~~~L~~Sn~iL~~v~~~ 467 (490)
T PF00523_consen 440 LGQVNNSLNNAKDLLDKSNQILDSVNPG 467 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445555555555566665555554443
No 40
>PHA03386 P10 fibrous body protein; Provisional
Probab=85.58 E-value=6.3 Score=26.69 Aligned_cols=55 Identities=13% Similarity=0.150 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHH
Q psy7328 66 VREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQ 124 (159)
Q Consensus 66 ~~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~ 124 (159)
++.+-..-+++-|..++.|...|..++.- .+-|+.|...|+.++..|...++-|.
T Consensus 6 ILl~Ir~dIkavd~KVdaLQ~qV~dv~~n----~~~LDa~~~qL~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 6 VLTQILDAVQEVDTKVDALQTQLNGLEED----SQPLDGLPAQLTELDTKVSDIQSILT 60 (94)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhc----chhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 44445567788899999999999999866 55599999999999999998877654
No 41
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=82.08 E-value=26 Score=32.58 Aligned_cols=17 Identities=18% Similarity=0.087 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy7328 90 RQKNIALTISNEVDVQN 106 (159)
Q Consensus 90 ~lk~ia~~i~~El~~Q~ 106 (159)
.++..-..++.++..+.
T Consensus 361 ~ik~~l~~~~~~i~~~a 377 (806)
T PF05478_consen 361 PIKRDLDSIGKQIRSQA 377 (806)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 42
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=81.24 E-value=1.6 Score=22.02 Aligned_cols=14 Identities=43% Similarity=0.859 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHH
Q psy7328 143 WVVIIVLFIANVLV 156 (159)
Q Consensus 143 ~~iI~~L~v~iv~l 156 (159)
+.+|++||+++|++
T Consensus 6 FalivVLFILLiIv 19 (24)
T PF09680_consen 6 FALIVVLFILLIIV 19 (24)
T ss_pred chhHHHHHHHHHHh
Confidence 44566677766665
No 43
>PHA03240 envelope glycoprotein M; Provisional
Probab=80.03 E-value=1.7 Score=34.07 Aligned_cols=18 Identities=17% Similarity=0.464 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHh
Q psy7328 141 GYWVVIIVLFIANVLVAT 158 (159)
Q Consensus 141 ~~~~iI~~L~v~iv~l~~ 158 (159)
-.|++|++++++||++++
T Consensus 213 ~~WIiilIIiIiIIIL~c 230 (258)
T PHA03240 213 IAWIFIAIIIIIVIILFF 230 (258)
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 367777666666666654
No 44
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=78.72 E-value=16 Score=23.93 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=16.5
Q ss_pred HHHHhhhhHHHHHHhHHhhhHHHH
Q psy7328 101 EVDVQNDLVDDITERMDHTNVSIQ 124 (159)
Q Consensus 101 El~~Q~~~Ld~l~~~vd~t~~~l~ 124 (159)
|..+=.+-||++++.|+-|.+.+-
T Consensus 16 d~~~i~~rLD~iEeKVEftn~Ei~ 39 (77)
T PRK01026 16 DFKEIQKRLDEIEEKVEFTNAEIF 39 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445668888888888877764
No 45
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=78.20 E-value=2.6 Score=21.71 Aligned_cols=14 Identities=50% Similarity=0.866 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q psy7328 143 WVVIIVLFIANVLV 156 (159)
Q Consensus 143 ~~iI~~L~v~iv~l 156 (159)
+.+|++|||++|++
T Consensus 8 f~livVLFILLIIi 21 (26)
T TIGR01732 8 FALIVVLFILLVIV 21 (26)
T ss_pred hHHHHHHHHHHHHh
Confidence 34555666666654
No 46
>KOG0862|consensus
Probab=77.46 E-value=26 Score=27.41 Aligned_cols=78 Identities=9% Similarity=0.157 Sum_probs=43.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHH
Q psy7328 79 QGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVLV 156 (159)
Q Consensus 79 ~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~~iI~~L~v~iv~l 156 (159)
+.++.+...+..++.+...==+++-.=++.|+.+....+.....=+...+..+.+...+-...+|-++++.+++++++
T Consensus 134 ~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa~~~~~~~l~f~~ 211 (216)
T KOG0862|consen 134 RNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYAAYVVFFVLLLFYV 211 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444566666677777766666655555555555556555554444455544444444444
No 47
>PHA03395 p10 fibrous body protein; Provisional
Probab=76.64 E-value=19 Score=24.15 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHhhhhHHHHHHhHHhhhHHH
Q psy7328 67 REQQQMMIAAQDQGLEALSKVISRQKNIA---LTISNEVDVQNDLVDDITERMDHTNVSI 123 (159)
Q Consensus 67 ~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia---~~i~~El~~Q~~~Ld~l~~~vd~t~~~l 123 (159)
+..=+.-+++-|..++.|...|..++.-. ..+++-|+.|...|+.++..++..++-|
T Consensus 6 Ll~Ir~dIkavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~tkv~~I~diL 65 (87)
T PHA03395 6 LLLIRQDIKAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTISSAVDNITDIL 65 (87)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHHHHHHHHHcc
Confidence 34445667888999999999999988655 3677889999999999999888766543
No 48
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=76.14 E-value=37 Score=26.84 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=5.4
Q ss_pred HHhhhhHHHHHHh
Q psy7328 103 DVQNDLVDDITER 115 (159)
Q Consensus 103 ~~Q~~~Ld~l~~~ 115 (159)
..|++.++-|.+.
T Consensus 93 k~~~dF~~~Lq~~ 105 (230)
T PF03904_consen 93 KVHNDFQDILQDE 105 (230)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 49
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=75.11 E-value=28 Score=25.04 Aligned_cols=74 Identities=12% Similarity=0.296 Sum_probs=52.6
Q ss_pred cCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHH
Q psy7328 60 GANIADVREQQQMMIAAQDQGLEALSKVISRQKN-------IALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTS 132 (159)
Q Consensus 60 ~~~~~~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~-------ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~ 132 (159)
++.-++++..| +++.+....||.+.+.++.+-. ++..+-.-..+||.+|.+++...+....-++.-.-++..
T Consensus 34 ~ltldeilknq-~lln~is~kldging~l~dliaqgnln~el~ke~lkianeqn~~ln~vn~~l~~in~~l~~ylpkits 112 (177)
T PF12495_consen 34 NLTLDEILKNQ-QLLNQISDKLDGINGSLNDLIAQGNLNSELSKEILKIANEQNQMLNNVNNQLNSINSMLNTYLPKITS 112 (177)
T ss_pred cccHHHHHHhH-HHHHHhcccccccCCcHHHHHHcCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 37777877644 5777778888888888887653 334444444689999999999999988877765554444
Q ss_pred HH
Q psy7328 133 IL 134 (159)
Q Consensus 133 ~~ 134 (159)
++
T Consensus 113 ml 114 (177)
T PF12495_consen 113 ML 114 (177)
T ss_pred HH
Confidence 44
No 50
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=74.13 E-value=20 Score=22.94 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=15.4
Q ss_pred HHHhhhhHHHHHHhHHhhhHHHH
Q psy7328 102 VDVQNDLVDDITERMDHTNVSIQ 124 (159)
Q Consensus 102 l~~Q~~~Ld~l~~~vd~t~~~l~ 124 (159)
..+=.+-||.+++.++-+.+.+.
T Consensus 14 ~~~i~~rLd~iEeKvEf~~~Ei~ 36 (70)
T PF04210_consen 14 FNEIMKRLDEIEEKVEFTNAEIA 36 (70)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Confidence 33444567788888887777664
No 51
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=73.94 E-value=20 Score=22.69 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=33.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHH
Q psy7328 78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRE 126 (159)
Q Consensus 78 D~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~ 126 (159)
++.|..|...+.-+-..-..+++.|-.|...||.+...+.....+++..
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777777777777777778888888888877776666666553
No 52
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=73.08 E-value=22 Score=22.79 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=16.6
Q ss_pred HHHHhhhhHHHHHHhHHhhhHHHH
Q psy7328 101 EVDVQNDLVDDITERMDHTNVSIQ 124 (159)
Q Consensus 101 El~~Q~~~Ld~l~~~vd~t~~~l~ 124 (159)
|..+=.+-||.+++.|+-|.+.+-
T Consensus 13 d~~~i~~rLd~iEeKVEf~~~E~~ 36 (70)
T TIGR01149 13 EFNEVMKRLDEIEEKVEFVNGEVA 36 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445667888888888877764
No 53
>KOG0859|consensus
Probab=72.65 E-value=14 Score=28.69 Aligned_cols=14 Identities=14% Similarity=0.330 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q psy7328 81 LEALSKVISRQKNI 94 (159)
Q Consensus 81 Ld~l~~~v~~lk~i 94 (159)
|..+..-|.++|.+
T Consensus 127 lskvkaqv~evk~v 140 (217)
T KOG0859|consen 127 LAKVKAQVTEVKGV 140 (217)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444455555544
No 54
>PRK02119 hypothetical protein; Provisional
Probab=71.21 E-value=25 Score=22.63 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=38.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHH
Q psy7328 74 IAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQR 125 (159)
Q Consensus 74 ~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~ 125 (159)
+...++-++.|...+.-+-..-..+++.|-.|...||.+...+.....+++.
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667788888888888888888888888888888887776666555544
No 55
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=70.81 E-value=5.7 Score=26.47 Aligned_cols=9 Identities=11% Similarity=0.534 Sum_probs=4.0
Q ss_pred HHHHHHhhc
Q psy7328 129 QVTSILTQD 137 (159)
Q Consensus 129 ~l~~~~~~~ 137 (159)
+|.++....
T Consensus 21 QL~qlVsrN 29 (84)
T PF06143_consen 21 QLEQLVSRN 29 (84)
T ss_pred HHHHHHHhC
Confidence 344444444
No 56
>PRK11637 AmiB activator; Provisional
Probab=69.51 E-value=71 Score=27.24 Aligned_cols=58 Identities=12% Similarity=0.177 Sum_probs=34.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhh
Q psy7328 79 QGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQ 136 (159)
Q Consensus 79 ~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~ 136 (159)
..++.+...+..+..--..+..++..-+.-++.+...+...+..+......++..+..
T Consensus 75 ~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra 132 (428)
T PRK11637 75 AQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDA 132 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455555666666666666666666666766666666666653
No 57
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=69.05 E-value=14 Score=25.36 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy7328 64 ADVREQQQMMIAAQDQGLEALSKVISRQKN 93 (159)
Q Consensus 64 ~~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~ 93 (159)
+.++..|..+|..|.+.+|.|+.+|+.|.+
T Consensus 81 q~Lm~rQN~mm~~qqqsidslsksvgklah 110 (121)
T PF10669_consen 81 QSLMNRQNNMMKQQQQSIDSLSKSVGKLAH 110 (121)
T ss_pred HHHHHHHhHHHHHHHHhHHHHHHHHHHHHH
Confidence 456788999999999999999999998764
No 58
>PRK10884 SH3 domain-containing protein; Provisional
Probab=68.79 E-value=53 Score=25.48 Aligned_cols=40 Identities=8% Similarity=0.196 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHH
Q psy7328 93 NIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTS 132 (159)
Q Consensus 93 ~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~ 132 (159)
+....+.+.+..-+..+.++...-++....+..+..++..
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444544444444554554444444444444444433
No 59
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=67.35 E-value=42 Score=23.83 Aligned_cols=61 Identities=5% Similarity=0.139 Sum_probs=35.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHh
Q psy7328 75 AAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILT 135 (159)
Q Consensus 75 ~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~ 135 (159)
.+....|..|...|..+..+-..++...+....+=+.|+.-++.+....+.+...|+.+-.
T Consensus 9 ~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~ 69 (151)
T cd00179 9 EEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEE 69 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666665533345556666666666666666666655543
No 60
>PRK00846 hypothetical protein; Provisional
Probab=66.24 E-value=34 Score=22.36 Aligned_cols=49 Identities=14% Similarity=0.061 Sum_probs=38.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHH
Q psy7328 78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRE 126 (159)
Q Consensus 78 D~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~ 126 (159)
++.|+.|...+.-+-..-..+++.|-.|...+|.+...+.....+|+..
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667788888888888888888888888888888887777766666554
No 61
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=65.71 E-value=7.4 Score=22.82 Aligned_cols=15 Identities=20% Similarity=0.503 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy7328 142 YWVVIIVLFIANVLV 156 (159)
Q Consensus 142 ~~~iI~~L~v~iv~l 156 (159)
+.++||+|++.||++
T Consensus 36 ~lilicllli~iivm 50 (52)
T TIGR01294 36 CLILICLLLICIIVM 50 (52)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555554
No 62
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=65.24 E-value=43 Score=23.13 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=34.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH---HHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHH
Q psy7328 76 AQDQGLEALSKVISRQKNIALTIS---NEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL 134 (159)
Q Consensus 76 eqD~~Ld~l~~~v~~lk~ia~~i~---~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~ 134 (159)
..+..|..+...+..+ ..+..|+ +.++.|++.+..+...+......|+.-.+.|..+.
T Consensus 34 ~~~q~L~kiE~~~~~l-~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~in 94 (102)
T PF01519_consen 34 SNNQRLTKIENKLDQL-AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSIN 94 (102)
T ss_dssp -HTTB-BHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666644 3344444 67777777777777777766666655555555444
No 63
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=64.16 E-value=57 Score=24.22 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy7328 81 LEALSKVISRQKNIALTISNEV 102 (159)
Q Consensus 81 Ld~l~~~v~~lk~ia~~i~~El 102 (159)
.+.+..-..+++.++..+.+-+
T Consensus 54 ~~~lr~Rydrlr~va~rvQ~vl 75 (156)
T PF08372_consen 54 PDSLRMRYDRLRSVAGRVQNVL 75 (156)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666654433
No 64
>PRK04406 hypothetical protein; Provisional
Probab=64.03 E-value=37 Score=21.97 Aligned_cols=52 Identities=12% Similarity=0.210 Sum_probs=38.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHH
Q psy7328 74 IAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQR 125 (159)
Q Consensus 74 ~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~ 125 (159)
+...++-++.|...+.-+-..-..+++.|-.|...||.+...+.....+++.
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667788888888888888888888888888888887776666555543
No 65
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=64.01 E-value=7.4 Score=22.80 Aligned_cols=15 Identities=20% Similarity=0.503 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy7328 142 YWVVIIVLFIANVLV 156 (159)
Q Consensus 142 ~~~iI~~L~v~iv~l 156 (159)
+.++||+|++.||++
T Consensus 36 clilicllli~iiv~ 50 (52)
T PF04272_consen 36 CLILICLLLICIIVM 50 (52)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555544
No 66
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=63.44 E-value=8 Score=25.67 Aligned_cols=11 Identities=36% Similarity=0.594 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q psy7328 142 YWVVIIVLFIA 152 (159)
Q Consensus 142 ~~~iI~~L~v~ 152 (159)
++.|.++|+|+
T Consensus 27 lMtILivLVII 37 (85)
T PF10717_consen 27 LMTILIVLVII 37 (85)
T ss_pred HHHHHHHHHHH
Confidence 34443333333
No 67
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=62.56 E-value=2.9 Score=30.91 Aligned_cols=36 Identities=14% Similarity=0.409 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhC
Q psy7328 120 NVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVLVATL 159 (159)
Q Consensus 120 ~~~l~~~~~~l~~~~~~~~~~~~~~iI~~L~v~iv~l~~~ 159 (159)
+.-|++.-+.+++ ++-|++..+|+++++++|++++|
T Consensus 117 DsLLKkKEae~kr----~K~Cki~~Li~~~vc~~ilVivV 152 (159)
T PF06789_consen 117 DSLLKKKEAELKR----SKVCKIFALIVLAVCAVILVIVV 152 (159)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHheEEEEE
Confidence 3445554444333 23355556655555455555543
No 68
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=62.42 E-value=39 Score=21.70 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=17.7
Q ss_pred HHHHHhhhhHHHHHHhHHhhhHHHH
Q psy7328 100 NEVDVQNDLVDDITERMDHTNVSIQ 124 (159)
Q Consensus 100 ~El~~Q~~~Ld~l~~~vd~t~~~l~ 124 (159)
+|.++=++-||+|+..|+-+...+-
T Consensus 15 ~dfne~~kRLdeieekvef~~~Ev~ 39 (75)
T COG4064 15 DDFNEIHKRLDEIEEKVEFVNGEVY 39 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3455556778888888888877663
No 69
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=61.24 E-value=81 Score=24.96 Aligned_cols=18 Identities=6% Similarity=-0.058 Sum_probs=7.4
Q ss_pred hhhHHHHHHHHHHHHHHh
Q psy7328 118 HTNVSIQRETNQVTSILT 135 (159)
Q Consensus 118 ~t~~~l~~~~~~l~~~~~ 135 (159)
......++..+.++....
T Consensus 124 k~r~e~~~ml~evK~~~E 141 (230)
T PF03904_consen 124 KVREENKSMLQEVKQSHE 141 (230)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 70
>PRK00736 hypothetical protein; Provisional
Probab=61.16 E-value=39 Score=21.33 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=32.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHH
Q psy7328 79 QGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQR 125 (159)
Q Consensus 79 ~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~ 125 (159)
+.++.|...+.-+-..-..+++.|-.|...||.+...+.....+++.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777777888888888777766666555544
No 71
>PHA02844 putative transmembrane protein; Provisional
Probab=58.91 E-value=27 Score=22.65 Aligned_cols=20 Identities=15% Similarity=0.092 Sum_probs=11.8
Q ss_pred CCchHHHHHHHHHHHHHHHH
Q psy7328 138 ATCGYWVVIIVLFIANVLVA 157 (159)
Q Consensus 138 ~~~~~~~iI~~L~v~iv~l~ 157 (159)
+.+..|.+++++++++++++
T Consensus 43 ~~~~~~~~~ii~i~~v~~~~ 62 (75)
T PHA02844 43 VCSSSTKIWILTIIFVVFAT 62 (75)
T ss_pred cCChhHHHHHHHHHHHHHHH
Confidence 34567888776655444433
No 72
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=58.91 E-value=10 Score=25.92 Aligned_cols=16 Identities=6% Similarity=0.127 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHHHHH
Q psy7328 141 GYWVVIIVLFIANVLV 156 (159)
Q Consensus 141 ~~~~iI~~L~v~iv~l 156 (159)
.+|+.++.+|+++|++
T Consensus 63 iili~lls~v~IlVil 78 (101)
T PF06024_consen 63 IILISLLSFVCILVIL 78 (101)
T ss_pred chHHHHHHHHHHHHHH
Confidence 3444444444444433
No 73
>PRK04325 hypothetical protein; Provisional
Probab=58.60 E-value=46 Score=21.36 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=33.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHH
Q psy7328 78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQR 125 (159)
Q Consensus 78 D~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~ 125 (159)
++.+..|...+.-+-..-..+++.|-.|...|+.+...+.....+++.
T Consensus 8 e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 8 EDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344777777777777777777778888888888777666555555543
No 74
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=58.16 E-value=14 Score=23.87 Aligned_cols=9 Identities=22% Similarity=0.789 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy7328 143 WVVIIVLFI 151 (159)
Q Consensus 143 ~~iI~~L~v 151 (159)
|.+|.+.++
T Consensus 50 ~~ii~ii~v 58 (72)
T PF12575_consen 50 ILIISIIFV 58 (72)
T ss_pred HHHHHHHHH
Confidence 333333333
No 75
>PLN03160 uncharacterized protein; Provisional
Probab=57.96 E-value=9 Score=29.90 Aligned_cols=17 Identities=18% Similarity=0.458 Sum_probs=8.2
Q ss_pred chHHHHHHHHHHHHHHH
Q psy7328 140 CGYWVVIIVLFIANVLV 156 (159)
Q Consensus 140 ~~~~~iI~~L~v~iv~l 156 (159)
||.|++.++|+++++++
T Consensus 39 c~~~~~a~~l~l~~v~~ 55 (219)
T PLN03160 39 CCGCITATLLILATTIL 55 (219)
T ss_pred EHHHHHHHHHHHHHHHH
Confidence 55555555454444433
No 76
>KOG3894|consensus
Probab=55.70 E-value=72 Score=26.44 Aligned_cols=28 Identities=7% Similarity=0.006 Sum_probs=16.9
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHHHH
Q psy7328 128 NQVTSILTQDATCGYWVVIIVLFIANVL 155 (159)
Q Consensus 128 ~~l~~~~~~~~~~~~~~iI~~L~v~iv~ 155 (159)
+++++.....+.|+.+.++|+-|+++++
T Consensus 284 rka~~~~~~~r~~~lf~llvlsf~lLFl 311 (316)
T KOG3894|consen 284 RKAKRNNGGLRVFLLFFLLVLSFSLLFL 311 (316)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 3444556666666666666666666654
No 77
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=55.67 E-value=11 Score=25.38 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy7328 142 YWVVIIVLFIANVLVAT 158 (159)
Q Consensus 142 ~~~iI~~L~v~iv~l~~ 158 (159)
.|.+|+++||++|++-+
T Consensus 36 ~~lvI~~iFil~Vilwf 52 (94)
T PF05393_consen 36 WFLVICGIFILLVILWF 52 (94)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 36666677777776654
No 78
>PRK00295 hypothetical protein; Provisional
Probab=54.73 E-value=52 Score=20.76 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHH
Q psy7328 80 GLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQR 125 (159)
Q Consensus 80 ~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~ 125 (159)
.+..|...+.-+-..-..+++.|-.|...||.+...+.....+++.
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666666666777777777777777777666665555544
No 79
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=54.03 E-value=85 Score=23.00 Aligned_cols=24 Identities=29% Similarity=0.181 Sum_probs=11.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q psy7328 78 DQGLEALSKVISRQKNIALTISNE 101 (159)
Q Consensus 78 D~~Ld~l~~~v~~lk~ia~~i~~E 101 (159)
++....|.....+..+=+....++
T Consensus 49 ~~fk~elE~~~~~w~~dak~kAEk 72 (144)
T PF11657_consen 49 DQFKEELEEIASRWGEDAKEKAEK 72 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555544444444433
No 80
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=53.84 E-value=58 Score=21.02 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=20.1
Q ss_pred HhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcC
Q psy7328 104 VQNDLVDDITERMDHTNVSIQRETNQVTSILTQDA 138 (159)
Q Consensus 104 ~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~ 138 (159)
.|..+|.+|-.+|++-...+..-++.+..+..+..
T Consensus 8 ~Q~~LLsRIi~NvekLNEsv~~lN~~l~eIn~~N~ 42 (72)
T PF08650_consen 8 QQSNLLSRIIGNVEKLNESVAELNQELEEINRANK 42 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 45556666666666665555555555555555443
No 81
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=53.83 E-value=1.2e+02 Score=24.50 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHhc
Q psy7328 10 LLEQLQSSSVKITNMYN 26 (159)
Q Consensus 10 ~v~~L~~~~~~l~~~~~ 26 (159)
.+..|+.++..+...++
T Consensus 143 ~i~~l~~~~~~~~~~~~ 159 (301)
T PF14362_consen 143 EIAALQAEIDQLEKEID 159 (301)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 82
>KOG1691|consensus
Probab=53.50 E-value=85 Score=24.52 Aligned_cols=59 Identities=15% Similarity=0.276 Sum_probs=36.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHH
Q psy7328 79 QGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVL 155 (159)
Q Consensus 79 ~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~~iI~~L~v~iv~ 155 (159)
+.|+-+.--+.+|-++...|++|+-. |+.=-..|+...+.+.++-.|.-|+-|+|++.+
T Consensus 134 eklep~E~elrrLed~~~sI~~e~~Y------------------Lr~REeemr~~nesTNsrv~~fSi~Sl~v~~~v 192 (210)
T KOG1691|consen 134 EKLEPLEVELRRLEDLVESIHEEMYY------------------LREREEEMRNTNESTNSRVAWFSILSLVVLLSV 192 (210)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 46778888888998888888888764 233333444444555555555555555555544
No 83
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=52.60 E-value=1e+02 Score=24.04 Aligned_cols=17 Identities=12% Similarity=0.372 Sum_probs=8.1
Q ss_pred HHHHHHhHHhhhHHHHH
Q psy7328 109 VDDITERMDHTNVSIQR 125 (159)
Q Consensus 109 Ld~l~~~vd~t~~~l~~ 125 (159)
+.+.+..++.....|.+
T Consensus 115 l~~aE~~~e~~~~~L~~ 131 (207)
T PF05546_consen 115 LEEAEEKVEEAFDDLMR 131 (207)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444555555544444
No 84
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=52.18 E-value=1.5e+02 Score=25.39 Aligned_cols=50 Identities=18% Similarity=0.166 Sum_probs=38.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHhHHhhhHHHHHHH
Q psy7328 78 DQGLEALSKVISRQKNIALTISNEVDVQN-DLVDDITERMDHTNVSIQRET 127 (159)
Q Consensus 78 D~~Ld~l~~~v~~lk~ia~~i~~El~~Q~-~~Ld~l~~~vd~t~~~l~~~~ 127 (159)
++.++--..-+.+||+--..|.+=++.|. +-.-+|.+.++..+.+|.+--
T Consensus 268 Nd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 268 NDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 66666666677888888788888888776 688888888888888887654
No 85
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=51.01 E-value=1e+02 Score=22.99 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=13.5
Q ss_pred HHHHHHHHhhhhHHHHHHhHHhhhHHHHH
Q psy7328 97 TISNEVDVQNDLVDDITERMDHTNVSIQR 125 (159)
Q Consensus 97 ~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~ 125 (159)
.+.+|...+..-+.+++..++.-=..|+.
T Consensus 117 ~~r~e~~~~~~ki~e~~~ki~~ei~~lr~ 145 (177)
T PF07798_consen 117 RIREEQAKQELKIQELNNKIDTEIANLRT 145 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444333333
No 86
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=50.97 E-value=33 Score=20.17 Aligned_cols=30 Identities=20% Similarity=0.431 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCChHHhhhhhhc
Q psy7328 7 RQRLLEQLQSSSVKITNMYNNRPSYSAQRNELFAD 41 (159)
Q Consensus 7 R~~~v~~L~~~~~~l~~~~~~~~~~~~~r~~l~~~ 41 (159)
=+..|+.|..+++.|+..|. .-.+..||.+
T Consensus 4 LrqQv~aL~~qv~~Lq~~fs-----~yKKa~lFp~ 33 (46)
T PF09006_consen 4 LRQQVEALQGQVQRLQAAFS-----QYKKAELFPN 33 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHCCC
Confidence 35679999999999999996 4566778865
No 87
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=50.53 E-value=1.4e+02 Score=24.58 Aligned_cols=31 Identities=13% Similarity=0.327 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHhHHhhhHHHHH
Q psy7328 95 ALTISNEVDVQNDLVDDITERMDHTNVSIQR 125 (159)
Q Consensus 95 a~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~ 125 (159)
....++.+..|++.|+++...++.....+..
T Consensus 76 ~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~ 106 (301)
T PF06120_consen 76 IAKAEESIAAQKRAIEDLQKKIDSLKDQIKN 106 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777777666666653
No 88
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=50.32 E-value=75 Score=21.30 Aligned_cols=62 Identities=6% Similarity=0.182 Sum_probs=36.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHh
Q psy7328 74 IAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILT 135 (159)
Q Consensus 74 ~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~ 135 (159)
.++....|..|...+..|..+-..++...+.-..+=++++..++.+....+.....|+.+-.
T Consensus 10 v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~ 71 (117)
T smart00503 10 VEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEK 71 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667766777666666666555422234455566666666666666666665543
No 89
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=49.27 E-value=75 Score=20.99 Aligned_cols=72 Identities=8% Similarity=0.133 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHH
Q psy7328 61 ANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTS 132 (159)
Q Consensus 61 ~~~~~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~ 132 (159)
.+.+..+..|.++....+..=..|..-..-...=-..+..+...+.++|-++-.++|.+..+++.-..++..
T Consensus 11 ~d~~~~l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 11 EDLDEILALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777887776665554444444444444455667788899999999999999999888877766653
No 90
>PRK04654 sec-independent translocase; Provisional
Probab=49.17 E-value=1.3e+02 Score=23.61 Aligned_cols=24 Identities=8% Similarity=0.021 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy7328 81 LEALSKVISRQKNIALTISNEVDV 104 (159)
Q Consensus 81 Ld~l~~~v~~lk~ia~~i~~El~~ 104 (159)
...+...++++|..+..+.+|+.+
T Consensus 29 aRtlGk~irk~R~~~~~vk~El~~ 52 (214)
T PRK04654 29 ARFAGLWVRRARMQWDSVKQELER 52 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555543
No 91
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=48.53 E-value=19 Score=22.01 Aligned_cols=16 Identities=19% Similarity=0.580 Sum_probs=8.4
Q ss_pred CchHHHHHHHHHHHHH
Q psy7328 139 TCGYWVVIIVLFIANV 154 (159)
Q Consensus 139 ~~~~~~iI~~L~v~iv 154 (159)
.|..|++|++.+.+||
T Consensus 2 ~~~~wlIIviVlgvIi 17 (55)
T PF11446_consen 2 TWNPWLIIVIVLGVII 17 (55)
T ss_pred cchhhHHHHHHHHHHH
Confidence 3455666655444444
No 92
>PRK11637 AmiB activator; Provisional
Probab=47.95 E-value=1.7e+02 Score=24.83 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=34.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcC
Q psy7328 79 QGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDA 138 (159)
Q Consensus 79 ~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~ 138 (159)
..+..+...+..+..--..+..++..-..-|+.++..++.++..+.....++......-.
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455566666666677777777777777776666666555433
No 93
>PRK02793 phi X174 lysis protein; Provisional
Probab=47.18 E-value=74 Score=20.30 Aligned_cols=48 Identities=8% Similarity=0.113 Sum_probs=31.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHH
Q psy7328 78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQR 125 (159)
Q Consensus 78 D~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~ 125 (159)
++-+..|...+.-+-..-..+++.|-.|...||.+...+.....+++.
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666666677777777777777776665555554443
No 94
>PRK03625 tatE twin arginine translocase protein E; Validated
Probab=47.13 E-value=18 Score=22.96 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHH
Q psy7328 141 GYWVVIIVLFIANVL 155 (159)
Q Consensus 141 ~~~~iI~~L~v~iv~ 155 (159)
+.|-++++++|++++
T Consensus 5 g~~elliIlvI~lll 19 (67)
T PRK03625 5 SITKLLVVAALVVLL 19 (67)
T ss_pred cHHHHHHHHHHHHHH
Confidence 344455555555444
No 95
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=47.03 E-value=1.6e+02 Score=24.92 Aligned_cols=65 Identities=12% Similarity=0.163 Sum_probs=48.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhH--HHHHHHHHHHHHHhhc
Q psy7328 73 MIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNV--SIQRETNQVTSILTQD 137 (159)
Q Consensus 73 ~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~--~l~~~~~~l~~~~~~~ 137 (159)
-+.+--+.....+++|..+...=..|.+|++....-+++=+..|..+.- +++.|..+|+.=++.+
T Consensus 281 ~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qM 347 (359)
T PF10498_consen 281 ELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQM 347 (359)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3344455667777778777777778888888888888888888888877 7888888887765544
No 96
>PHA03049 IMV membrane protein; Provisional
Probab=46.99 E-value=25 Score=22.29 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy7328 143 WVVIIVLFIANVLVA 157 (159)
Q Consensus 143 ~~iI~~L~v~iv~l~ 157 (159)
+++||+.+|++++..
T Consensus 7 l~iICVaIi~lIvYg 21 (68)
T PHA03049 7 LVIICVVIIGLIVYG 21 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555443
No 97
>KOG2678|consensus
Probab=46.85 E-value=1.5e+02 Score=23.59 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=21.9
Q ss_pred HHHHHhHHhhhHHHHHHHHHHHHHHh----hcCCchHHHHHHHHHHHHHHH
Q psy7328 110 DDITERMDHTNVSIQRETNQVTSILT----QDATCGYWVVIIVLFIANVLV 156 (159)
Q Consensus 110 d~l~~~vd~t~~~l~~~~~~l~~~~~----~~~~~~~~~iI~~L~v~iv~l 156 (159)
+.=+.-+..+...+..+...|+.... ++.+|+.+|+-+.++|++|+.
T Consensus 179 keDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~s 229 (244)
T KOG2678|consen 179 KEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVILS 229 (244)
T ss_pred HhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 33344444555555555555554433 334675444434444444433
No 98
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=46.59 E-value=1.9e+02 Score=24.99 Aligned_cols=56 Identities=13% Similarity=0.236 Sum_probs=29.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHH
Q psy7328 77 QDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTS 132 (159)
Q Consensus 77 qD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~ 132 (159)
....+..+...+...+........+|..+..-++.++...-.+...++...+.+..
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~ 98 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIAD 98 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 34445555555555555555555555555555555555555555544444444443
No 99
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=46.40 E-value=39 Score=16.88 Aligned_cols=18 Identities=11% Similarity=0.233 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy7328 3 SFERRQRLLEQLQSSSVK 20 (159)
Q Consensus 3 E~~rR~~~v~~L~~~~~~ 20 (159)
|+++.++-|.+|.+++..
T Consensus 2 E~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSE 19 (23)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 778888888888887764
No 100
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=46.32 E-value=43 Score=29.76 Aligned_cols=22 Identities=5% Similarity=0.327 Sum_probs=8.7
Q ss_pred HHHHHHHHhhcCCchHHHHHHHH
Q psy7328 127 TNQVTSILTQDATCGYWVVIIVL 149 (159)
Q Consensus 127 ~~~l~~~~~~~~~~~~~~iI~~L 149 (159)
...|+.+..+.. +.+|+.+.++
T Consensus 466 ~~~Lk~s~pKan-K~LWIsvAli 487 (538)
T PF05781_consen 466 ASYLKTSFPKAN-KVLWISVALI 487 (538)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHH
Confidence 333444443332 3345544333
No 101
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=45.72 E-value=81 Score=20.93 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=16.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy7328 72 MMIAAQDQGLEALSKVISRQKNIALTIS 99 (159)
Q Consensus 72 ~~~~eqD~~Ld~l~~~v~~lk~ia~~i~ 99 (159)
+.+...+..||.|...+..|.+=.-.|.
T Consensus 26 ~E~~~ins~LD~Lns~LD~LE~rnD~l~ 53 (83)
T PF03670_consen 26 EEYAAINSMLDQLNSCLDHLEQRNDHLH 53 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3466667777777666666554433333
No 102
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=44.93 E-value=1.7e+02 Score=23.84 Aligned_cols=69 Identities=16% Similarity=0.230 Sum_probs=38.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHHHH
Q psy7328 73 MIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVV 145 (159)
Q Consensus 73 ~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~~i 145 (159)
+++--++.|+.+...|..+..-...=...|.++-+.|......+ ..|......|..+++.++..+.|.=
T Consensus 7 l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~----~~l~~~~~~L~~aL~~~k~rG~wGE 75 (304)
T PF02646_consen 7 LLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEI----QQLSQEASNLTSALKNSKTRGNWGE 75 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHhCCCchhhHHH
Confidence 34444555666666666555444433344555555555554333 4566666777777775555666653
No 103
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=44.32 E-value=29 Score=22.98 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy7328 144 VVIIVLFIANVL 155 (159)
Q Consensus 144 ~iI~~L~v~iv~ 155 (159)
+||++.+|++|+
T Consensus 37 liivvVvVlvVv 48 (93)
T PF08999_consen 37 LIIVVVVVLVVV 48 (93)
T ss_dssp HHHHHHHHHHHH
T ss_pred EEEEEeeehhHH
Confidence 333333333333
No 104
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=44.09 E-value=70 Score=23.80 Aligned_cols=34 Identities=12% Similarity=0.314 Sum_probs=18.9
Q ss_pred HHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHHH
Q psy7328 111 DITERMDHTNVSIQRETNQVTSILTQDATCGYWV 144 (159)
Q Consensus 111 ~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~~ 144 (159)
++-.++.+-.-.+..+.++++++.+....+..|.
T Consensus 72 ~l~~~~~~~~~~~~ea~~~L~~I~~~~~~y~~~~ 105 (193)
T PF06738_consen 72 RLSRRIVAGQLSLEEAIERLDEIDREPPRYPPWL 105 (193)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHhhCCCCCCHHH
Confidence 3333343444456677777888777664333333
No 105
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=43.67 E-value=30 Score=21.99 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q psy7328 143 WVVIIVLFIANVLV 156 (159)
Q Consensus 143 ~~iI~~L~v~iv~l 156 (159)
+++||+.+|++|+.
T Consensus 7 Li~ICVaii~lIlY 20 (68)
T PF05961_consen 7 LIIICVAIIGLILY 20 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445444444443
No 106
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=42.20 E-value=99 Score=20.36 Aligned_cols=31 Identities=16% Similarity=0.111 Sum_probs=17.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7328 75 AAQDQGLEALSKVISRQKNIALTISNEVDVQ 105 (159)
Q Consensus 75 ~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q 105 (159)
.+.+...+.+...+......+....+++...
T Consensus 5 ~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~ 35 (94)
T PF05957_consen 5 AELEQLRADLEDLARSAADLAGEKADEARDR 35 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3445555666666666666555555555543
No 107
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=42.02 E-value=11 Score=33.84 Aligned_cols=79 Identities=10% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcC----CchHHHHHHHHH
Q psy7328 75 AAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDA----TCGYWVVIIVLF 150 (159)
Q Consensus 75 ~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~----~~~~~~iI~~L~ 150 (159)
++-++-+..+..++-.+.++..-=..=|+-+.++ +.....-..|..+.=-|+++.+... .|+.|++|++.+
T Consensus 484 kel~e~~~n~n~t~P~l~~l~~fN~T~LNLt~EI-----~~Lq~~I~~LN~tlVdLe~Ln~~e~YiKWPWyVWL~i~~~l 558 (610)
T PF01601_consen 484 KELDEIFKNLNSTLPNLDDLDIFNQTYLNLTSEI-----DELQEVIDNLNNTLVDLEWLNRYETYIKWPWYVWLAIILAL 558 (610)
T ss_dssp ---------S------HHHHCCHHHHHHHHHHHH-----HHHHHHHHHHHCCHHHCCHHTTCCCHH--------------
T ss_pred HHHHHHHHhcCCCCCCCCchhhcccceeccHHHH-----HHHHHHHHHhhhhheeHHHhcceeEEeehHHHHHHHHHHHH
Q ss_pred HHHHHHHh
Q psy7328 151 IANVLVAT 158 (159)
Q Consensus 151 v~iv~l~~ 158 (159)
++++++++
T Consensus 559 i~~~~~l~ 566 (610)
T PF01601_consen 559 IAFALILL 566 (610)
T ss_dssp --------
T ss_pred HHHHHHHH
No 108
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=41.39 E-value=57 Score=21.13 Aligned_cols=23 Identities=4% Similarity=0.179 Sum_probs=18.6
Q ss_pred hhHHHHHHhHHhhhHHHHHHHHH
Q psy7328 107 DLVDDITERMDHTNVSIQRETNQ 129 (159)
Q Consensus 107 ~~Ld~l~~~vd~t~~~l~~~~~~ 129 (159)
+.|++|+...-..+-++.+..+.
T Consensus 9 r~L~eiEr~L~~~DP~fa~~l~~ 31 (82)
T PF11239_consen 9 RRLEEIERQLRADDPRFAARLRS 31 (82)
T ss_pred HHHHHHHHHHHhcCcHHHHHhcc
Confidence 48999999998888888776655
No 109
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=41.32 E-value=1e+02 Score=20.28 Aligned_cols=56 Identities=13% Similarity=0.208 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhh
Q psy7328 80 GLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQ 136 (159)
Q Consensus 80 ~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~ 136 (159)
.|-.|...|..|..+...||.- .+-.++-+.|......+...++.+...++.+...
T Consensus 4 ~l~~in~~v~~l~k~~~~lGt~-~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~ 59 (102)
T PF14523_consen 4 NLFKINQNVSQLEKLVNQLGTP-RDSQELREKIHQLIQKTNQLIKEISELLKKLNSL 59 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SS-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHhCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666677777777776643 3344566666666666666666666666666554
No 110
>PRK14859 tatA twin arginine translocase protein A; Provisional
Probab=41.12 E-value=29 Score=21.79 Aligned_cols=14 Identities=21% Similarity=0.358 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q psy7328 142 YWVVIIVLFIANVL 155 (159)
Q Consensus 142 ~~~iI~~L~v~iv~ 155 (159)
.|-++++++|++++
T Consensus 6 ~~ElliIlvv~Llv 19 (63)
T PRK14859 6 MPELIVILVIVLIV 19 (63)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 111
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=41.02 E-value=1.1e+02 Score=25.61 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=12.0
Q ss_pred HHhhhhHHHHHHhHHhhhHHHH
Q psy7328 103 DVQNDLVDDITERMDHTNVSIQ 124 (159)
Q Consensus 103 ~~Q~~~Ld~l~~~vd~t~~~l~ 124 (159)
+.|..||.+++..-.+.+.+++
T Consensus 153 ~~~~~Ll~kL~~~k~Kl~kklk 174 (336)
T PF05055_consen 153 DQQSSLLEKLDSRKKKLRKKLK 174 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666655555554443
No 112
>PRK01470 tatA twin arginine translocase protein A; Provisional
Probab=40.49 E-value=28 Score=20.88 Aligned_cols=12 Identities=42% Similarity=0.451 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q psy7328 143 WVVIIVLFIANV 154 (159)
Q Consensus 143 ~~iI~~L~v~iv 154 (159)
|-++++++|+++
T Consensus 6 ~elliI~vi~ll 17 (51)
T PRK01470 6 SHLLIVLLIIFV 17 (51)
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 113
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=39.34 E-value=1.8e+02 Score=22.42 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHH
Q psy7328 81 LEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYW 143 (159)
Q Consensus 81 Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~ 143 (159)
+|.+...+...|.+...--+-+=.=++-|+.+-+.. ..|.-..+.+.+..++.+.||+|
T Consensus 131 ~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~s----s~L~~~s~~~~k~akk~n~~~~~ 189 (190)
T COG5143 131 LDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLS----SILLLSSKMFPKSAKKSNLCCLI 189 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH----HHHHHHHHHHHHHHHHhhhhhee
Confidence 555555555555444333333333333333332222 23444555555555555556555
No 114
>KOG1318|consensus
Probab=39.06 E-value=97 Score=26.72 Aligned_cols=101 Identities=11% Similarity=0.103 Sum_probs=51.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHhhhhhhcCCCCCCCCCCCCccCccccCCHHHHHHHHHHHHHHH----
Q psy7328 2 SSFERRQRLLEQLQSSSVKITNMYNNRPSYSAQRNELFADVGTTGWGDDASDEESPLLGANIADVREQQQMMIAAQ---- 77 (159)
Q Consensus 2 ~E~~rR~~~v~~L~~~~~~l~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~q~~~~~eq---- 77 (159)
+|+||||+. ..+.+.++|...+-+.. ..+.+.. .++ - ... .. -+++.+++.+++.++.+
T Consensus 238 NeVERRRR~--nIN~~IkeLg~liP~~~-~~~~~~n---Kgt--I----Lk~-s~----dYIr~Lqq~~q~~~E~~~rqk 300 (411)
T KOG1318|consen 238 NEVERRRRE--NINDRIKELGQLIPKCN-SEDMKSN---KGT--I----LKA-SC----DYIRELQQTLQRARELENRQK 300 (411)
T ss_pred hHHHHHHHH--HHHHHHHHHHHhCCCCC-cchhhcc---cch--h----hHH-HH----HHHHHHHHHHHHHHHHHhhhh
Confidence 477877774 56788888888876442 1222322 000 0 000 00 23455555554444332
Q ss_pred --HHhHHHHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHhHHhh
Q psy7328 78 --DQGLEALSKVISRQKNIALTISNEVDVQN--DLVDDITERMDHT 119 (159)
Q Consensus 78 --D~~Ld~l~~~v~~lk~ia~~i~~El~~Q~--~~Ld~l~~~vd~t 119 (159)
+.....|...+..|+.++...+..+.-.. ..+...+..++..
T Consensus 301 ~le~~n~~L~~rieeLk~~~~~~~~~~~~~~~~~~~~~~e~~i~~e 346 (411)
T KOG1318|consen 301 KLESTNQELALRIEELKSEAGRHGLQVEPSKLTNSLEGSEQIIKEE 346 (411)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhcCccccccccccchhhhhhhhhc
Confidence 23355667777777777777776665333 3344444444333
No 115
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=38.97 E-value=1.2e+02 Score=20.29 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHh-hhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCC
Q psy7328 91 QKNIALTISNEVDVQ-NDLVDDITERMDHTNVSIQRETNQVTSILTQDAT 139 (159)
Q Consensus 91 lk~ia~~i~~El~~Q-~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~ 139 (159)
+..-+..+..-|+.. ..+|+.|+..-......|..-...+..-.....+
T Consensus 44 I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~ 93 (127)
T smart00502 44 IKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSH 93 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555533 4688888887777777777777766666655443
No 116
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.91 E-value=2.1e+02 Score=23.18 Aligned_cols=63 Identities=17% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhh
Q psy7328 74 IAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQ 136 (159)
Q Consensus 74 ~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~ 136 (159)
+..+|..+..+......+-.-=..+...+++=..-+++....++++...++...+.+..+...
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 117
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=38.60 E-value=48 Score=18.59 Aligned_cols=7 Identities=29% Similarity=0.809 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy7328 149 LFIANVL 155 (159)
Q Consensus 149 L~v~iv~ 155 (159)
|+.++|+
T Consensus 18 lflv~im 24 (43)
T PF11395_consen 18 LFLVIIM 24 (43)
T ss_pred HHHHHHH
Confidence 3333333
No 118
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=38.23 E-value=1.1e+02 Score=19.87 Aligned_cols=29 Identities=3% Similarity=0.157 Sum_probs=13.3
Q ss_pred hhHHHHHHhHHhhhHHHHHHHHHHHHHHh
Q psy7328 107 DLVDDITERMDHTNVSIQRETNQVTSILT 135 (159)
Q Consensus 107 ~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~ 135 (159)
+.|+.|+.-++.....|+.+...+.++..
T Consensus 8 ~~Lr~IN~~ie~~~~~L~~a~~~~~~v~~ 36 (78)
T PF08651_consen 8 EQLRKINPVIEGLIETLRSAKSNMNRVQE 36 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 119
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=37.66 E-value=90 Score=18.57 Aligned_cols=58 Identities=14% Similarity=0.186 Sum_probs=40.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHH
Q psy7328 72 MMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQ 129 (159)
Q Consensus 72 ~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~ 129 (159)
+.+.+....+..|......+...-..=+.-|+.=..-+|.....+.++..+|..+.+.
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~ 61 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKY 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666666666666666666667766777777888888888888877664
No 120
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=37.53 E-value=1.2e+02 Score=20.14 Aligned_cols=36 Identities=11% Similarity=0.148 Sum_probs=17.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy7328 78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDIT 113 (159)
Q Consensus 78 D~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~ 113 (159)
....+.+...+...+.-+..-.+|-..=|+=||+++
T Consensus 37 ~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~ 72 (85)
T PRK09973 37 NAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQD 72 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 334444455555555545444445544444444443
No 121
>PRK14860 tatA twin arginine translocase protein A; Provisional
Probab=37.48 E-value=30 Score=21.82 Aligned_cols=14 Identities=36% Similarity=0.420 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q psy7328 142 YWVVIIVLFIANVL 155 (159)
Q Consensus 142 ~~~iI~~L~v~iv~ 155 (159)
.|-++++++|++++
T Consensus 6 ~~ElliI~vIalll 19 (64)
T PRK14860 6 MPELIVILVIALVV 19 (64)
T ss_pred HHHHHHHHHHHHhh
Confidence 34444444444443
No 122
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=37.28 E-value=1.6e+02 Score=22.94 Aligned_cols=64 Identities=11% Similarity=0.196 Sum_probs=49.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhc
Q psy7328 74 IAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD 137 (159)
Q Consensus 74 ~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~ 137 (159)
+++-.+.+..+...+.....-+...-.|+..-+.-+..++..++++..+|..+..++..+-+..
T Consensus 10 ld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~ 73 (237)
T PF00261_consen 10 LDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRA 73 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666777777777788888888888889999999998888888888887776543
No 123
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=36.85 E-value=30 Score=20.77 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q psy7328 143 WVVIIVLFIANV 154 (159)
Q Consensus 143 ~~iI~~L~v~iv 154 (159)
|-++++++|+++
T Consensus 4 ~El~iI~vvall 15 (53)
T PF02416_consen 4 PELLIILVVALL 15 (53)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 124
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=36.57 E-value=34 Score=28.16 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy7328 142 YWVVIIVLFIANVLVAT 158 (159)
Q Consensus 142 ~~~iI~~L~v~iv~l~~ 158 (159)
+..+|++|+|++|+||+
T Consensus 259 ~aSiiaIliIVLIMvII 275 (299)
T PF02009_consen 259 IASIIAILIIVLIMVII 275 (299)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555543
No 125
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=34.01 E-value=85 Score=19.57 Aligned_cols=36 Identities=17% Similarity=0.316 Sum_probs=24.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHhhhhhh
Q psy7328 2 SSFERRQRLLEQLQSSSVKITNMYNNRPSYSAQRNELFA 40 (159)
Q Consensus 2 ~E~~rR~~~v~~L~~~~~~l~~~~~~~~~~~~~r~~l~~ 40 (159)
.|++.| +.-|+.+...++.....+.++++.-+.||+
T Consensus 28 ~El~eR---IalLq~EIeRlkAe~~kK~~srsAAeaLFr 63 (65)
T COG5509 28 AELEER---IALLQAEIERLKAELAKKKASRSAAEALFR 63 (65)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHhhhccHHHHHHHHh
Confidence 355555 444667788888887766666677777875
No 126
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=33.92 E-value=84 Score=19.50 Aligned_cols=12 Identities=17% Similarity=0.144 Sum_probs=5.1
Q ss_pred hhhHHHHHHHHH
Q psy7328 118 HTNVSIQRETNQ 129 (159)
Q Consensus 118 ~t~~~l~~~~~~ 129 (159)
.+..-|.+..++
T Consensus 10 TA~~FL~RvGr~ 21 (60)
T PF06072_consen 10 TATEFLRRVGRQ 21 (60)
T ss_pred cHHHHHHHHhHH
Confidence 344444444433
No 127
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=33.63 E-value=3.3e+02 Score=23.90 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy7328 3 SFERRQRLLEQLQSSSVKITNMYNNR 28 (159)
Q Consensus 3 E~~rR~~~v~~L~~~~~~l~~~~~~~ 28 (159)
+++.-+..|..|+.++.+|+..+..+
T Consensus 26 ~i~~L~~ql~aLq~~v~eL~~~laa~ 51 (514)
T PF11336_consen 26 QIKALQAQLQALQDQVNELRAKLAAK 51 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45666778888888999998887654
No 128
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=33.50 E-value=1.3e+02 Score=19.29 Aligned_cols=63 Identities=10% Similarity=0.239 Sum_probs=36.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhh
Q psy7328 74 IAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQ 136 (159)
Q Consensus 74 ~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~ 136 (159)
..+....++.|...+..+..+-..+-.....-...=.+|+.-+..+.........+|+.+-..
T Consensus 9 v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 9 VQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777666655554444223444555555555555566666666655544
No 129
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=33.19 E-value=38 Score=20.12 Aligned_cols=9 Identities=67% Similarity=1.431 Sum_probs=4.0
Q ss_pred hHHHHHHHH
Q psy7328 141 GYWVVIIVL 149 (159)
Q Consensus 141 ~~~~iI~~L 149 (159)
++|++.++|
T Consensus 5 wywivli~l 13 (54)
T PF13260_consen 5 WYWIVLIVL 13 (54)
T ss_pred HHHHHHHHH
Confidence 355544333
No 130
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=32.83 E-value=1.4e+02 Score=19.19 Aligned_cols=27 Identities=11% Similarity=0.289 Sum_probs=18.2
Q ss_pred HHHHHHhHHhhhHHHHHHHHHHHHHHh
Q psy7328 109 VDDITERMDHTNVSIQRETNQVTSILT 135 (159)
Q Consensus 109 Ld~l~~~vd~t~~~l~~~~~~l~~~~~ 135 (159)
..++....|....++..++..+..-..
T Consensus 14 ~~~i~~rLd~iEeKvEf~~~Ei~Qr~G 40 (70)
T PF04210_consen 14 FNEIMKRLDEIEEKVEFTNAEIAQRAG 40 (70)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 345666677788888888777655443
No 131
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=32.76 E-value=1.8e+02 Score=25.20 Aligned_cols=66 Identities=9% Similarity=0.138 Sum_probs=45.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHH
Q psy7328 78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYW 143 (159)
Q Consensus 78 D~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~ 143 (159)
++.|+.+...-+-+..--..+...+..-.+.+++++..+++...++.+-..+|..++.+...-.-|
T Consensus 391 ~~~l~~~~~~~G~l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mns~~s~ 456 (462)
T PRK08032 391 ATNLKSWLSTTGIIKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSY 456 (462)
T ss_pred HHHHHHHHcCCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444333334455555667888888888888888888888888888888888888776544334
No 132
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=32.28 E-value=1.4e+02 Score=22.13 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7328 3 SFERRQRLLEQLQSSSVKITNMYNN 27 (159)
Q Consensus 3 E~~rR~~~v~~L~~~~~~l~~~~~~ 27 (159)
+..+|-..+++++.-+..|+....-
T Consensus 22 ~~~~R~~~L~~l~~~L~~L~~EI~y 46 (170)
T PF09548_consen 22 RLKRRVRQLRELRRALQLLETEIRY 46 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888899999988888887654
No 133
>PF04923 Ninjurin: Ninjurin ; InterPro: IPR007007 Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation of some tissues [].; GO: 0007155 cell adhesion, 0042246 tissue regeneration, 0016021 integral to membrane
Probab=31.89 E-value=1.5e+02 Score=20.38 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhcCC-chHHHHHHHHHHHHHHHH
Q psy7328 125 RETNQVTSILTQDAT-CGYWVVIIVLFIANVLVA 157 (159)
Q Consensus 125 ~~~~~l~~~~~~~~~-~~~~~iI~~L~v~iv~l~ 157 (159)
....+++.+++.... ..++.++.++.+.|++-+
T Consensus 23 ANasQLk~vl~~g~~~~~y~~~l~Li~iSlvLQv 56 (104)
T PF04923_consen 23 ANASQLKYVLEVGPEHPFYYFLLTLISISLVLQV 56 (104)
T ss_pred HhHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHH
Confidence 344568888887654 455555555555555443
No 134
>TIGR01411 tatAE twin arginine-targeting protein translocase, TatA/E family. This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409.
Probab=31.71 E-value=48 Score=19.37 Aligned_cols=12 Identities=17% Similarity=0.157 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q psy7328 143 WVVIIVLFIANV 154 (159)
Q Consensus 143 ~~iI~~L~v~iv 154 (159)
|-++++++|+++
T Consensus 5 ~ElliI~vi~ll 16 (47)
T TIGR01411 5 PEWLIILVVILL 16 (47)
T ss_pred HHHHHHHHHHHH
Confidence 333334444333
No 135
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=31.68 E-value=1.6e+02 Score=19.58 Aligned_cols=53 Identities=13% Similarity=0.238 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHH
Q psy7328 82 EALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL 134 (159)
Q Consensus 82 d~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~ 134 (159)
+.+..-+.++..--..+..||+....-.+.++..-..+..+|..+...++-++
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL 87 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVL 87 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444445555555555555555555555666666665555544
No 136
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=31.48 E-value=32 Score=23.50 Aligned_cols=8 Identities=63% Similarity=1.153 Sum_probs=3.5
Q ss_pred chHHHHHH
Q psy7328 140 CGYWVVII 147 (159)
Q Consensus 140 ~~~~~iI~ 147 (159)
+..|.+|+
T Consensus 21 ~~~w~vi~ 28 (98)
T COG5416 21 KGQWTVII 28 (98)
T ss_pred cceeeHHH
Confidence 33444444
No 137
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=31.08 E-value=86 Score=27.67 Aligned_cols=19 Identities=11% Similarity=0.186 Sum_probs=12.8
Q ss_pred chHHHHHHHHHHHHHHHHH
Q psy7328 2 SSFERRQRLLEQLQSSSVK 20 (159)
Q Consensus 2 ~E~~rR~~~v~~L~~~~~~ 20 (159)
.|++++++.|.+|..=..+
T Consensus 48 ~~l~~Y~~tl~~Ll~Pi~~ 66 (490)
T PF00523_consen 48 QELDEYNNTLTELLTPIQD 66 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3677778777777665544
No 138
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=30.69 E-value=1.6e+02 Score=20.36 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhhc
Q psy7328 125 RETNQVTSILTQD 137 (159)
Q Consensus 125 ~~~~~l~~~~~~~ 137 (159)
.|++||-.+++++
T Consensus 16 ~AMrRLl~~LRqs 28 (103)
T PF11027_consen 16 MAMRRLLNLLRQS 28 (103)
T ss_pred HHHHHHHHHHHHh
Confidence 4667777777654
No 139
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=30.03 E-value=51 Score=21.49 Aligned_cols=11 Identities=18% Similarity=-0.007 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q psy7328 147 IVLFIANVLVA 157 (159)
Q Consensus 147 ~~L~v~iv~l~ 157 (159)
++|++++++++
T Consensus 35 ~~L~~fL~~li 45 (81)
T PF11057_consen 35 GLLCLFLGLLI 45 (81)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 140
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=29.89 E-value=1.2e+02 Score=17.61 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=14.7
Q ss_pred HHHHHhhcC--CchHHHHHHHHHHHHHHHH
Q psy7328 130 VTSILTQDA--TCGYWVVIIVLFIANVLVA 157 (159)
Q Consensus 130 l~~~~~~~~--~~~~~~iI~~L~v~iv~l~ 157 (159)
|+.+.++.+ -+++.+..+.|+.++|.++
T Consensus 12 MRNMVRKg~~SL~HF~LT~~gll~~lv~la 41 (45)
T PF11688_consen 12 MRNMVRKGGTSLFHFGLTAVGLLGFLVGLA 41 (45)
T ss_pred HHHHHHccCcchhHHHHHHHHHHHHHHHHH
Confidence 334445543 2566555555666566554
No 141
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=29.79 E-value=2.7e+02 Score=21.71 Aligned_cols=22 Identities=5% Similarity=0.271 Sum_probs=12.4
Q ss_pred HHhHHhhhHHHHHHHHHHHHHH
Q psy7328 113 TERMDHTNVSIQRETNQVTSIL 134 (159)
Q Consensus 113 ~~~vd~t~~~l~~~~~~l~~~~ 134 (159)
...+..+..........|.+.+
T Consensus 112 k~~l~~aE~~~e~~~~~L~~~I 133 (207)
T PF05546_consen 112 KEALEEAEEKVEEAFDDLMRAI 133 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666665544
No 142
>KOG0946|consensus
Probab=29.72 E-value=5e+02 Score=24.78 Aligned_cols=64 Identities=11% Similarity=0.108 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHH
Q psy7328 67 REQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQV 130 (159)
Q Consensus 67 ~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l 130 (159)
.+.-+.++.++|-++..++....++..--.....|+..++.....+.+.++-....++....+.
T Consensus 659 ~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~ 722 (970)
T KOG0946|consen 659 QQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQ 722 (970)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence 3445667889999999999999998888888888888877766666666666666665433333
No 143
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=29.35 E-value=3.3e+02 Score=22.53 Aligned_cols=61 Identities=8% Similarity=0.218 Sum_probs=41.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhh
Q psy7328 76 AQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQ 136 (159)
Q Consensus 76 eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~ 136 (159)
+..+.|......+..+..-=..+..+.+.-..-...+...+..+..+|.++.+-+..+..-
T Consensus 232 ~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E 292 (344)
T PF12777_consen 232 EAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE 292 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Confidence 3344455555555555555555556666666667888888999999999998877766653
No 144
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=29.19 E-value=1.4e+02 Score=20.40 Aligned_cols=27 Identities=11% Similarity=0.405 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhHH
Q psy7328 91 QKNIALTISNEVDVQNDLVDDITERMD 117 (159)
Q Consensus 91 lk~ia~~i~~El~~Q~~~Ld~l~~~vd 117 (159)
|+.+=..+..|+..|.+-||+++..++
T Consensus 74 L~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 74 LKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333445566788888888998887664
No 145
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=28.40 E-value=1.7e+02 Score=18.95 Aligned_cols=50 Identities=14% Similarity=0.399 Sum_probs=28.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHH
Q psy7328 73 MIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQR 125 (159)
Q Consensus 73 ~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~ 125 (159)
.+++-.+.++.+...+. .+..++.+-+...|+++++++..+++++.-...
T Consensus 27 ~l~~~~~ti~~l~~~~~---~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~ 76 (90)
T PF06103_consen 27 TLDEVNKTIDTLQEQVD---PITKEINDLLHNTNELLEDVNEKLEKVDPVFEA 76 (90)
T ss_pred HHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44444444444444433 334556666667778888777777665554433
No 146
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=28.37 E-value=2.6e+02 Score=21.04 Aligned_cols=68 Identities=6% Similarity=0.190 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhc
Q psy7328 70 QQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD 137 (159)
Q Consensus 70 q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~ 137 (159)
.+..+.+....|..+...+..|+.-......++.+.+..+..+.+.....+-.+.....++.++-.-.
T Consensus 107 l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En 174 (194)
T PF08614_consen 107 LEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEEN 174 (194)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777888999999999999999999999999999999999998888888888888776543
No 147
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=28.08 E-value=53 Score=21.45 Aligned_cols=19 Identities=11% Similarity=0.424 Sum_probs=8.7
Q ss_pred CchHHHHHHHHHHHHHHHH
Q psy7328 139 TCGYWVVIIVLFIANVLVA 157 (159)
Q Consensus 139 ~~~~~~iI~~L~v~iv~l~ 157 (159)
.-+.|.++-+.+.++++++
T Consensus 62 ~Ak~~~~ia~~~g~~~~i~ 80 (82)
T PF04505_consen 62 KAKKWSIIAIIIGIVIIIL 80 (82)
T ss_pred HhHHHHHHHHHHHHHHHhe
Confidence 3445555544444444443
No 148
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=27.91 E-value=2.6e+02 Score=20.80 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy7328 3 SFERRQRLLEQLQSSSVKITNMYNNR 28 (159)
Q Consensus 3 E~~rR~~~v~~L~~~~~~l~~~~~~~ 28 (159)
...+|-..++.|+.-+..|++...-+
T Consensus 23 ~~~~R~~~L~~l~~~l~~L~~EI~Y~ 48 (171)
T PRK08307 23 RYKERPRQLRELKAALQSLEAEIMYG 48 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45688889999999999998876644
No 149
>PRK14861 tatA twin arginine translocase protein A; Provisional
Probab=27.87 E-value=59 Score=20.20 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q psy7328 143 WVVIIVLFIANVL 155 (159)
Q Consensus 143 ~~iI~~L~v~iv~ 155 (159)
|=++++++|++++
T Consensus 8 ~ElliI~vi~llv 20 (61)
T PRK14861 8 PGLILILVVALII 20 (61)
T ss_pred HHHHHHHHHHHHh
Confidence 3344444444443
No 150
>PF00974 Rhabdo_glycop: Rhabdovirus spike glycoprotein; InterPro: IPR001903 Different families of ssRNA negative-strand viruses contain glycoproteins responsible for forming spikes on the surface of the virion. The glycoprotein spike is made up of a trimer of glycoproteins. These proteins are frequently abbreviated to G protein. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating [, ].; GO: 0019031 viral envelope; PDB: 2CMZ_C 2J6J_A 3EGD_D.
Probab=27.67 E-value=15 Score=32.38 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=0.4
Q ss_pred HHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHH
Q psy7328 111 DITERMDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVLVA 157 (159)
Q Consensus 111 ~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~~iI~~L~v~iv~l~ 157 (159)
.+.+..+-....+....+.+..+....++|..|+.++++++++++++
T Consensus 422 ~~~~~~~~~~~~~~~~~~~v~~v~~~~~~W~~~~~~~~~~vi~~ill 468 (501)
T PF00974_consen 422 DDSNAEDFFDGHTPDSKNPVSLVDLWFSNWGEWLSIIAIAVILLILL 468 (501)
T ss_dssp T----------------------------------------------
T ss_pred ccccccccccCCcCcCCCeeeEeecccccHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555566666656577888887766555544433
No 151
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=27.58 E-value=20 Score=25.72 Aligned_cols=58 Identities=9% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH---HHHhHHhhhHHHHHHHHHHHHH
Q psy7328 76 AQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDD---ITERMDHTNVSIQRETNQVTSI 133 (159)
Q Consensus 76 eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~---l~~~vd~t~~~l~~~~~~l~~~ 133 (159)
.-...++.....+..|...+-.+-+.++.-....+. |..++.+....+..|.....++
T Consensus 49 ~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~~~~ls~nI~~IrelI~qAR~~An~I 109 (138)
T PF06009_consen 49 DANKALDDANNSVKNLEQLAPDLLDKLKPLENLSENNSNLSRNISRIRELIAQARDAANRI 109 (138)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 445556666666666666666665555544444444 5555555555555555544443
No 152
>PHA02675 ORF104 fusion protein; Provisional
Probab=27.48 E-value=1.9e+02 Score=19.24 Aligned_cols=48 Identities=6% Similarity=0.135 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHH
Q psy7328 83 ALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQV 130 (159)
Q Consensus 83 ~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l 130 (159)
.+..-+.+|-.....+-+.-..-++.|++++...+.....|-.-.+++
T Consensus 34 sle~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~L~KKI 81 (90)
T PHA02675 34 SVEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREALLKLNTKI 81 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555667777777777888888888888887666655554444
No 153
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=27.48 E-value=2.1e+02 Score=19.77 Aligned_cols=63 Identities=13% Similarity=0.265 Sum_probs=40.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHhHHhhhHHHHHHHHHHHHH
Q psy7328 71 QMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQN-DLVDDITERMDHTNVSIQRETNQVTSI 133 (159)
Q Consensus 71 ~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~-~~Ld~l~~~vd~t~~~l~~~~~~l~~~ 133 (159)
.+++.+..+-++.+...+..--..+.+=..|+.... ..|.+..+.+..+.+.+....+.....
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~ 74 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADA 74 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 445666666677777776666666777667777665 367777777777765555544444433
No 154
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=27.23 E-value=2.6e+02 Score=20.62 Aligned_cols=29 Identities=7% Similarity=0.170 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHH-HHHHHhhhhHHHHHHhH
Q psy7328 88 ISRQKNIALTIS-NEVDVQNDLVDDITERM 116 (159)
Q Consensus 88 v~~lk~ia~~i~-~El~~Q~~~Ld~l~~~v 116 (159)
...+.+.|..+| ...+.|-+.|+-.-..+
T Consensus 107 ~e~L~~lg~~LG~~D~~~Q~k~i~l~~~~L 136 (170)
T PF09548_consen 107 KEILLELGKSLGYSDREMQEKHIELYLEQL 136 (170)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 344556666663 35666666665554443
No 155
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=27.08 E-value=1.6e+02 Score=18.07 Aligned_cols=48 Identities=13% Similarity=0.240 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHH
Q psy7328 80 GLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL 134 (159)
Q Consensus 80 ~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~ 134 (159)
.++.|+.-|+.|+.--..+..++. .+..++..+...-.+++.||..+.
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~-------~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVN-------ALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhH
Confidence 345555555555444333333332 233344445555555555555443
No 156
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=26.86 E-value=2.7e+02 Score=20.67 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy7328 3 SFERRQRLLEQLQSSSVKITNMYNNR 28 (159)
Q Consensus 3 E~~rR~~~v~~L~~~~~~l~~~~~~~ 28 (159)
...+|-..++.|+.-+..|++...-+
T Consensus 22 ~~~~R~~~L~~l~~~l~~L~~EI~Y~ 47 (170)
T TIGR02833 22 RFKERPRQLRQLINALQSLEAEIVYG 47 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45688889999999999998876643
No 157
>KOG1666|consensus
Probab=26.83 E-value=3.2e+02 Score=21.52 Aligned_cols=64 Identities=9% Similarity=0.187 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHH---hHHhhhHHHHHHHHHHHHHHhhc
Q psy7328 70 QQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQN-DLVDDITE---RMDHTNVSIQRETNQVTSILTQD 137 (159)
Q Consensus 70 q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~-~~Ld~l~~---~vd~t~~~l~~~~~~l~~~~~~~ 137 (159)
|++.+-.--+.|..-...+.. |..|..|-+.=+ ++|.++.. ...++..+|..+...+.+-.+.-
T Consensus 119 QR~rLl~nTerLeRst~rl~d----s~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL 186 (220)
T KOG1666|consen 119 QRARLLQNTERLERSTDRLKD----SQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKIL 186 (220)
T ss_pred HHHHHHhhhHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHH
Confidence 444444444444444444433 344444444333 46666664 45667777777777666655543
No 158
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=26.72 E-value=1.5e+02 Score=19.63 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=12.1
Q ss_pred HHHHHHHhhhhHHHHHHhHHhhhHHHH
Q psy7328 98 ISNEVDVQNDLVDDITERMDHTNVSIQ 124 (159)
Q Consensus 98 i~~El~~Q~~~Ld~l~~~vd~t~~~l~ 124 (159)
|+..|+.=|.-||.|+..-|+...+|+
T Consensus 31 ins~LD~Lns~LD~LE~rnD~l~~~L~ 57 (83)
T PF03670_consen 31 INSMLDQLNSCLDHLEQRNDHLHAQLQ 57 (83)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 333444444444444444444444443
No 159
>PHA03164 hypothetical protein; Provisional
Probab=26.43 E-value=74 Score=20.84 Aligned_cols=10 Identities=50% Similarity=0.687 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q psy7328 148 VLFIANVLVA 157 (159)
Q Consensus 148 ~L~v~iv~l~ 157 (159)
+|++++|+.+
T Consensus 71 ILfiifvlyv 80 (88)
T PHA03164 71 ILFIIFVLYV 80 (88)
T ss_pred HHHHHHHHHh
Confidence 3444444433
No 160
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=26.14 E-value=2.8e+02 Score=20.76 Aligned_cols=61 Identities=13% Similarity=0.319 Sum_probs=49.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcC
Q psy7328 78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDA 138 (159)
Q Consensus 78 D~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~ 138 (159)
.+..+.+...+..|..-...+..+++.....|.++...+..-...++.-...+..++...+
T Consensus 102 ~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~ 162 (184)
T PF05791_consen 102 QKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGEN 162 (184)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccc
Confidence 4467778888888888888889999999899999988888888888888888887776543
No 161
>PF11587 Prion_bPrPp: Major prion protein bPrPp - N terminal; PDB: 1SKH_A.
Probab=26.06 E-value=47 Score=17.55 Aligned_cols=9 Identities=56% Similarity=0.892 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q psy7328 144 VVIIVLFIA 152 (159)
Q Consensus 144 ~iI~~L~v~ 152 (159)
|+|++|||+
T Consensus 8 cWilvLfva 16 (29)
T PF11587_consen 8 CWILVLFVA 16 (29)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334445554
No 162
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=26.03 E-value=4.6e+02 Score=23.09 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhhcC-CchHHHHH
Q psy7328 121 VSIQRETNQVTSILTQDA-TCGYWVVI 146 (159)
Q Consensus 121 ~~l~~~~~~l~~~~~~~~-~~~~~~iI 146 (159)
..++.+.+.-+.+..+++ ++|.|...
T Consensus 243 ~~lk~~dk~Ck~il~K~~~~~c~w~~l 269 (469)
T PF10151_consen 243 ESLKECDKACKVILGKMSGSSCPWTRL 269 (469)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCchHHH
Confidence 445556666666666554 34555553
No 163
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=25.96 E-value=51 Score=23.34 Aligned_cols=19 Identities=26% Similarity=0.196 Sum_probs=8.0
Q ss_pred CchHHHHHHHHHHHHHHHH
Q psy7328 139 TCGYWVVIIVLFIANVLVA 157 (159)
Q Consensus 139 ~~~~~~iI~~L~v~iv~l~ 157 (159)
.|+--..|..|+|++|+++
T Consensus 59 awgagsfiatliillviff 77 (150)
T PF06084_consen 59 AWGAGSFIATLIILLVIFF 77 (150)
T ss_pred hcccchHHHHHHHHHHHhh
Confidence 3443334444444444433
No 164
>PLN03160 uncharacterized protein; Provisional
Probab=25.83 E-value=33 Score=26.72 Aligned_cols=20 Identities=5% Similarity=-0.195 Sum_probs=10.8
Q ss_pred CCchHHHHHHHHHHHHHHHH
Q psy7328 138 ATCGYWVVIIVLFIANVLVA 157 (159)
Q Consensus 138 ~~~~~~~iI~~L~v~iv~l~ 157 (159)
..+|.+|+.+++++++++.+
T Consensus 33 r~~~~~c~~~~~a~~l~l~~ 52 (219)
T PLN03160 33 RRNCIKCCGCITATLLILAT 52 (219)
T ss_pred cccceEEHHHHHHHHHHHHH
Confidence 45566666555555554433
No 165
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=25.73 E-value=3.8e+02 Score=22.10 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q psy7328 68 EQQQMMIAAQDQGLEALSKVISRQ 91 (159)
Q Consensus 68 q~q~~~~~eqD~~Ld~l~~~v~~l 91 (159)
..|+..+.+++..++.+...+...
T Consensus 84 ~~q~~~i~~l~~~i~~l~~~i~~y 107 (301)
T PF06120_consen 84 AAQKRAIEDLQKKIDSLKDQIKNY 107 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667777777776666443
No 166
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=25.66 E-value=1.3e+02 Score=23.27 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=8.7
Q ss_pred chHHHHHHHHHHHHH
Q psy7328 140 CGYWVVIIVLFIANV 154 (159)
Q Consensus 140 ~~~~~iI~~L~v~iv 154 (159)
|.+|.++.+|+..++
T Consensus 79 ~Ii~mI~sflfFGif 93 (214)
T PF06837_consen 79 HIIWMIFSFLFFGIF 93 (214)
T ss_pred eeehHHHHHHHHHHH
Confidence 446666666655554
No 167
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=25.46 E-value=2.1e+02 Score=21.25 Aligned_cols=62 Identities=8% Similarity=0.047 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHH-HHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHh
Q psy7328 88 ISRQKNIALTISN-EVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVLVAT 158 (159)
Q Consensus 88 v~~lk~ia~~i~~-El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~~iI~~L~v~iv~l~~ 158 (159)
...+++.|..+|. .++.|.+.++-.-..++. .....+.-.. +++++|-..-+++.+++++++
T Consensus 107 ~eiL~~lG~~LG~~D~e~Q~k~i~L~~~~L~~-------~~~~a~~~~~--k~~Kmy~~LGvl~Gl~lvIll 169 (170)
T TIGR02833 107 KEILLQFGKTLGESDREGQQKHINLTLEHLER-------QLTEAEDEQK--KNEKMYRYLGVLVGLMIVLLL 169 (170)
T ss_pred HHHHHHHHHHHCcCcHHHHHHHHHHHHHHHHH-------HHHHHHHHHH--hcccHHHHHHHHHHHHHHHHh
Confidence 4445566666654 355666655544333322 2222222121 245555555555555444443
No 168
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=25.01 E-value=69 Score=22.56 Aligned_cols=16 Identities=38% Similarity=0.416 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHh
Q psy7328 143 WVVIIVLFIANVLVAT 158 (159)
Q Consensus 143 ~~iI~~L~v~iv~l~~ 158 (159)
+.+|++|+|.+.+|.|
T Consensus 65 vglii~LivSLaLVsF 80 (128)
T PF15145_consen 65 VGLIIVLIVSLALVSF 80 (128)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555554444
No 169
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=24.95 E-value=76 Score=21.68 Aligned_cols=9 Identities=22% Similarity=0.837 Sum_probs=4.4
Q ss_pred chHHHHHHH
Q psy7328 140 CGYWVVIIV 148 (159)
Q Consensus 140 ~~~~~iI~~ 148 (159)
|.+|+++++
T Consensus 22 w~FWlv~~l 30 (102)
T PF11669_consen 22 WYFWLVWVL 30 (102)
T ss_pred HHHHHHHHH
Confidence 455555433
No 170
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=24.85 E-value=2.7e+02 Score=20.08 Aligned_cols=64 Identities=9% Similarity=0.180 Sum_probs=43.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcC
Q psy7328 75 AAQDQGLEALSKVISRQKNIALTISN---EVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDA 138 (159)
Q Consensus 75 ~eqD~~Ld~l~~~v~~lk~ia~~i~~---El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~ 138 (159)
...+..|+.+...+...+.....-.. ..+.=+.-+.-|+..++.+..+|+.++.++..+-.+..
T Consensus 45 ~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae 111 (143)
T PF12718_consen 45 QQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAE 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34456666666666666655544432 33445567778888888888888888888887766553
No 171
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=24.80 E-value=2.6e+02 Score=19.83 Aligned_cols=45 Identities=4% Similarity=0.175 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHh
Q psy7328 84 LSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILT 135 (159)
Q Consensus 84 l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~ 135 (159)
|.+++..++++...|..+++ .++.+---++.+.+.++..|.+++.
T Consensus 2 lKdt~~kmkeL~e~~~~D~~-------K~EKGNKAAGtRaRK~sleLeKLaK 46 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAE-------KAEKGNKAAGTRARKASLELEKLAK 46 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHH-------HHHccchHHHHHHHHHHHHHHHHHH
Confidence 34455556666666655553 3677777788888888888887765
No 172
>KOG4677|consensus
Probab=24.61 E-value=1.8e+02 Score=25.66 Aligned_cols=49 Identities=14% Similarity=0.362 Sum_probs=26.8
Q ss_pred hHHHHHH--hHHhhhHHHHHHHHHHHHHHhhcCC----chHHHHHHHHHHHHHHH
Q psy7328 108 LVDDITE--RMDHTNVSIQRETNQVTSILTQDAT----CGYWVVIIVLFIANVLV 156 (159)
Q Consensus 108 ~Ld~l~~--~vd~t~~~l~~~~~~l~~~~~~~~~----~~~~~iI~~L~v~iv~l 156 (159)
++.++++ .+-.+...+..+.-++.++++.-.+ |..|++|+=|-|.||++
T Consensus 493 l~~d~~~~~q~r~a~s~VD~~s~~l~~~lr~~psArif~~~YmallHLWvmivlL 547 (554)
T KOG4677|consen 493 LYRDLKDRQQLRAARSKVDKGSAELEKILRLLPSARIFWKNYMALLHLWVMIVLL 547 (554)
T ss_pred HhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHh
Confidence 4444444 4445566666677777777775543 33344444455555544
No 173
>PTZ00046 rifin; Provisional
Probab=24.52 E-value=3.5e+02 Score=22.96 Aligned_cols=17 Identities=12% Similarity=0.278 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy7328 142 YWVVIIVLFIANVLVAT 158 (159)
Q Consensus 142 ~~~iI~~L~v~iv~l~~ 158 (159)
...+|.+++|+||+||+
T Consensus 318 iaSiiAIvVIVLIMvII 334 (358)
T PTZ00046 318 IASIVAIVVIVLIMVII 334 (358)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555554
No 174
>PRK10778 dksA RNA polymerase-binding transcription factor; Provisional
Probab=24.50 E-value=2.9e+02 Score=20.26 Aligned_cols=31 Identities=13% Similarity=0.204 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy7328 61 ANIADVREQQQMMIAAQDQGLEALSKVISRQ 91 (159)
Q Consensus 61 ~~~~~~~q~q~~~~~eqD~~Ld~l~~~v~~l 91 (159)
|+..++..+.+.+.....+-++.+...+..+
T Consensus 32 M~~~ql~~fr~~L~~~r~eL~~~i~~~~~~~ 62 (151)
T PRK10778 32 MNEAQLAHFKRILEAWRNQLRDEVDRTVTHM 62 (151)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665555555555555555555555443
No 175
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=24.19 E-value=2.4e+02 Score=19.14 Aligned_cols=50 Identities=14% Similarity=0.138 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHh
Q psy7328 69 QQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDH 118 (159)
Q Consensus 69 ~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~ 118 (159)
++.+..+.....+..|......+..|..+.+.-..++.+-|+.+-.....
T Consensus 48 ~~~~~~~~~~~vi~~L~~a~~~l~~I~~n~~lT~~q~~~~I~~l~~~~~~ 97 (113)
T PF02520_consen 48 QKEEVRKNVTAVISNLSSAFAKLSAILDNKSLTRQQQQEAIDALRKQYPE 97 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCHHHHHHHHHHHHHHCCH
Confidence 33333344444455555555555555555555555555555555444433
No 176
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=24.17 E-value=4.1e+02 Score=21.91 Aligned_cols=56 Identities=2% Similarity=0.111 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHh
Q psy7328 80 GLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILT 135 (159)
Q Consensus 80 ~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~ 135 (159)
.|+.+...+..+..-=.....++.+....+..+...+.....+.......+..+-+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445555555555556666665555555555555555444
No 177
>PRK15396 murein lipoprotein; Provisional
Probab=24.17 E-value=2.1e+02 Score=18.63 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=13.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q psy7328 79 QGLEALSKVISRQKNIALTISNEVDVQNDLVD 110 (159)
Q Consensus 79 ~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld 110 (159)
...+.+...+..++.=+....+|-..=|+=||
T Consensus 39 ~kvdql~~dv~~~~~~~~~a~~eA~raN~RlD 70 (78)
T PRK15396 39 AKVDQLSNDVNAMRSDVQAAKDDAARANQRLD 70 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443334433333333
No 178
>PF03408 Foamy_virus_ENV: Foamy virus envelope protein ; InterPro: IPR005070 Expression of the envelope (Env) glycoprotein is essential for viral particle egress. This feature is unique to the Spumavirinae, a subclass of the Retroviridae. ; GO: 0019031 viral envelope
Probab=24.05 E-value=96 Score=29.22 Aligned_cols=24 Identities=4% Similarity=0.009 Sum_probs=10.1
Q ss_pred HHHHHHhhc--CCchHHHHHHHHHHH
Q psy7328 129 QVTSILTQD--ATCGYWVVIIVLFIA 152 (159)
Q Consensus 129 ~l~~~~~~~--~~~~~~~iI~~L~v~ 152 (159)
|++.+.-.. .+-+.|++|++.+|+
T Consensus 46 R~kY~~Y~~CATSTRim~Wilf~cvl 71 (981)
T PF03408_consen 46 RCKYLCYLCCATSTRIMAWILFVCVL 71 (981)
T ss_pred hHHHHHHHHHcchhHHHHHHHHHHHH
Confidence 555554322 133444444443333
No 179
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=23.51 E-value=2e+02 Score=18.01 Aligned_cols=6 Identities=17% Similarity=-0.003 Sum_probs=2.4
Q ss_pred HHHHHh
Q psy7328 130 VTSILT 135 (159)
Q Consensus 130 l~~~~~ 135 (159)
.+.+.+
T Consensus 50 ~kW~~r 55 (71)
T PF10779_consen 50 TKWIWR 55 (71)
T ss_pred HHHHHH
Confidence 344443
No 180
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=23.42 E-value=1.6e+02 Score=20.23 Aligned_cols=53 Identities=11% Similarity=0.242 Sum_probs=22.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHH
Q psy7328 76 AQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETN 128 (159)
Q Consensus 76 eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~ 128 (159)
+-|..|+.|...+..+..--.....++..-+.-|..+....+.....|..+.+
T Consensus 22 eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~ 74 (131)
T PF05103_consen 22 EVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQE 74 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhh
Confidence 44677777777777776666666666666666666665554444444433333
No 181
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=23.40 E-value=3.4e+02 Score=20.74 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHH
Q psy7328 82 EALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL 134 (159)
Q Consensus 82 d~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~ 134 (159)
-.|...|.++-....++-+.+..|-+.=-.+..+|.....+|+..-.++.+++
T Consensus 82 inlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L 134 (189)
T TIGR02132 82 INLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKIL 134 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444544444444444444444445554444444444
No 182
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=23.29 E-value=2.1e+02 Score=21.30 Aligned_cols=62 Identities=11% Similarity=0.077 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHH-HHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHh
Q psy7328 88 ISRQKNIALTISN-EVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVVIIVLFIANVLVAT 158 (159)
Q Consensus 88 v~~lk~ia~~i~~-El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~~iI~~L~v~iv~l~~ 158 (159)
...+++.|..+|. .++.|.+.++-.-..++ ......+.-.. +++++|-..-+++.+++++++
T Consensus 108 ~eiL~~lg~~LG~~D~e~Q~k~i~L~~e~L~-------~~~~~a~~~~~--k~~Kmy~~LGvl~Gl~lvIlL 170 (171)
T PRK08307 108 IEILLQFGKTLGQSDREGQQKHIRLALEHLE-------REEEEAEEEQK--KNEKMYKYLGFLAGLLIVILL 170 (171)
T ss_pred HHHHHHHHHHHCcCcHHHHHHHHHHHHHHHH-------HHHHHHHHHHH--hCCcHHHHHHHHHHHHHHHHh
Confidence 4445666666654 35566665554433332 22222222222 244555555555555544443
No 183
>PF03579 SHP: Small hydrophobic protein; InterPro: IPR005327 The small hydrophobic integral membrane protein, SH (previously designated 1A) is found to have a variety of glycosylated forms [, ]. This protein is a component of the mature respiratory syncytial virion [] where it may form complexes and appears to play a structural role.; GO: 0016020 membrane, 0016021 integral to membrane, 0048222 glycoprotein network
Probab=23.28 E-value=91 Score=19.28 Aligned_cols=7 Identities=29% Similarity=0.719 Sum_probs=3.0
Q ss_pred chHHHHH
Q psy7328 140 CGYWVVI 146 (159)
Q Consensus 140 ~~~~~iI 146 (159)
|.++.+|
T Consensus 15 W~YFtLi 21 (64)
T PF03579_consen 15 WTYFTLI 21 (64)
T ss_pred chHHHHH
Confidence 4444433
No 184
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=23.18 E-value=2.3e+02 Score=23.95 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy7328 142 YWVVIIVLFIANVLVAT 158 (159)
Q Consensus 142 ~~~iI~~L~v~iv~l~~ 158 (159)
...+|.+++|++|+||+
T Consensus 313 iaSiIAIvvIVLIMvII 329 (353)
T TIGR01477 313 IASIIAILIIVLIMVII 329 (353)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555543
No 185
>PHA02909 hypothetical protein; Provisional
Probab=22.95 E-value=43 Score=20.64 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=5.0
Q ss_pred chHHHHHHHHHHHH
Q psy7328 140 CGYWVVIIVLFIAN 153 (159)
Q Consensus 140 ~~~~~iI~~L~v~i 153 (159)
.|+|+- ++|+|+|
T Consensus 32 fcimvs-filfvii 44 (72)
T PHA02909 32 FCIMVS-FILFVII 44 (72)
T ss_pred hhHHHH-HHHHHHH
Confidence 444332 3344433
No 186
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=22.94 E-value=1.4e+02 Score=16.62 Aligned_cols=7 Identities=0% Similarity=-0.263 Sum_probs=3.0
Q ss_pred hhcCCch
Q psy7328 135 TQDATCG 141 (159)
Q Consensus 135 ~~~~~~~ 141 (159)
.+.++|-
T Consensus 11 aYEr~Wi 17 (38)
T PF09125_consen 11 AYERGWI 17 (38)
T ss_dssp HHHHHHH
T ss_pred HHHHhHH
Confidence 3444443
No 187
>PRK13664 hypothetical protein; Provisional
Probab=22.89 E-value=1.2e+02 Score=18.80 Aligned_cols=11 Identities=18% Similarity=1.023 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q psy7328 143 WVVIIVLFIAN 153 (159)
Q Consensus 143 ~~iI~~L~v~i 153 (159)
|++|++++|.+
T Consensus 9 Wilill~lvG~ 19 (62)
T PRK13664 9 WILVLVFLVGV 19 (62)
T ss_pred HHHHHHHHHHH
Confidence 44344444433
No 188
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=22.85 E-value=51 Score=22.55 Aligned_cols=6 Identities=67% Similarity=0.711 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy7328 146 IIVLFI 151 (159)
Q Consensus 146 I~~L~v 151 (159)
++.|++
T Consensus 84 ~igL~i 89 (97)
T PF05440_consen 84 IIGLVI 89 (97)
T ss_pred HHHHHH
Confidence 333433
No 189
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=22.85 E-value=2.5e+02 Score=18.85 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=32.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHH
Q psy7328 74 IAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQR 125 (159)
Q Consensus 74 ~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~ 125 (159)
..+.++....++..+..++.. ..++..+-..||.|+..|..-..-+..
T Consensus 37 Y~~~~~~~~~l~~~~~~l~~k----~~~l~~~l~~Id~Ie~~V~~LE~~v~~ 84 (99)
T PF10046_consen 37 YKKMKDIAAGLEKNLEDLNQK----YEELQPYLQQIDQIEEQVTELEQTVYE 84 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666653 367788888899988888765544443
No 190
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=22.81 E-value=2.4e+02 Score=18.68 Aligned_cols=37 Identities=5% Similarity=0.331 Sum_probs=31.1
Q ss_pred HHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhc
Q psy7328 101 EVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD 137 (159)
Q Consensus 101 El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~ 137 (159)
+|..|.++|++-..-+..+..+|..+...|..++...
T Consensus 42 ~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~ 78 (90)
T PF02970_consen 42 DIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEFLEEE 78 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHC
Confidence 6778888888888888889999999988888887643
No 191
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=22.75 E-value=3.9e+02 Score=21.14 Aligned_cols=55 Identities=9% Similarity=0.160 Sum_probs=27.3
Q ss_pred HHHHHhhhhHHHHHH---hHHhhhHHHHHHHHHHHHHHhhcC-----CchHHHHHHHHHHHHH
Q psy7328 100 NEVDVQNDLVDDITE---RMDHTNVSIQRETNQVTSILTQDA-----TCGYWVVIIVLFIANV 154 (159)
Q Consensus 100 ~El~~Q~~~Ld~l~~---~vd~t~~~l~~~~~~l~~~~~~~~-----~~~~~~iI~~L~v~iv 154 (159)
+.|+.+-..|+.... +-+.....|.....-++.+..+.+ ...+|+++.+-.+++.
T Consensus 150 ~~v~s~i~yl~~~~~~~~~~~~~~~~l~~le~~l~~lF~~~k~d~~dpsl~Wv~l~iG~iIi~ 212 (232)
T PF09577_consen 150 QRVDSHISYLERLRFQQLDQKEVQEALEQLEEDLQKLFDGVKEDEADPSLIWVMLSIGGIIIA 212 (232)
T ss_pred HHHHHHHHHHHHhhhcccChHHHHHHHHHHHHHHHHHhCcccccccccchHHHHHHHHHHHHH
Confidence 445555556665432 223344455555666666665432 2446665444333333
No 192
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=22.67 E-value=76 Score=21.57 Aligned_cols=17 Identities=12% Similarity=0.350 Sum_probs=8.5
Q ss_pred chHHHHHHHHHHHHHHH
Q psy7328 140 CGYWVVIIVLFIANVLV 156 (159)
Q Consensus 140 ~~~~~iI~~L~v~iv~l 156 (159)
|+-+.|++..+|+++++
T Consensus 49 WRN~GIli~f~i~f~~~ 65 (103)
T PF06422_consen 49 WRNFGILIAFWIFFIVL 65 (103)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 66555555444444433
No 193
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.47 E-value=4.3e+02 Score=22.58 Aligned_cols=17 Identities=12% Similarity=0.286 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy7328 142 YWVVIIVLFIANVLVAT 158 (159)
Q Consensus 142 ~~~iI~~L~v~iv~l~~ 158 (159)
..++++.++|+++++.+
T Consensus 167 ~vll~v~~~v~~~Ll~~ 183 (397)
T COG1459 167 LVLLVVALVVVLFLLIF 183 (397)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 194
>PHA02639 EEV host range protein; Provisional
Probab=22.38 E-value=25 Score=28.75 Aligned_cols=6 Identities=67% Similarity=0.955 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy7328 144 VVIIVL 149 (159)
Q Consensus 144 ~iI~~L 149 (159)
++|++|
T Consensus 258 ~~~~~~ 263 (295)
T PHA02639 258 TVIILL 263 (295)
T ss_pred EhhHHH
Confidence 333333
No 195
>PHA03240 envelope glycoprotein M; Provisional
Probab=22.01 E-value=79 Score=24.96 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=14.5
Q ss_pred CCchHHHHHHHHHHHHHHH
Q psy7328 138 ATCGYWVVIIVLFIANVLV 156 (159)
Q Consensus 138 ~~~~~~~iI~~L~v~iv~l 156 (159)
..|.+.++|++.+|+|+.+
T Consensus 213 ~~WIiilIIiIiIIIL~cf 231 (258)
T PHA03240 213 IAWIFIAIIIIIVIILFFF 231 (258)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 4888888887877777765
No 196
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=21.85 E-value=1e+02 Score=21.30 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=10.9
Q ss_pred cCCchHHHHHHHHHHHHHHHH
Q psy7328 137 DATCGYWVVIIVLFIANVLVA 157 (159)
Q Consensus 137 ~~~~~~~~iI~~L~v~iv~l~ 157 (159)
.++|.+++-+++.++.+=+||
T Consensus 14 g~sW~~LVGVv~~al~~SlLI 34 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLI 34 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHH
Confidence 346776665555444443333
No 197
>KOG1434|consensus
Probab=21.75 E-value=1.2e+02 Score=24.83 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy7328 2 SSFERRQRLLEQLQSSSVKITNMYNNR 28 (159)
Q Consensus 2 ~E~~rR~~~v~~L~~~~~~l~~~~~~~ 28 (159)
+|+..|++.+..+..+++.|.+.|+-+
T Consensus 232 geLseRqqkLn~ml~kl~~laeefnvA 258 (335)
T KOG1434|consen 232 GELSERQQKLNQMLQKLNKLAEEFNVA 258 (335)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhccEE
Confidence 699999999999999999999999854
No 198
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=21.70 E-value=74 Score=24.93 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy7328 141 GYWVVIIVLFIANVLVA 157 (159)
Q Consensus 141 ~~~~iI~~L~v~iv~l~ 157 (159)
..|.++.+++|++|+++
T Consensus 178 ~~W~i~~~~~i~~i~~i 194 (215)
T PHA02947 178 KPWFIVGVVIILIIFVI 194 (215)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 35666655555555444
No 199
>PF02442 L1R_F9L: Lipid membrane protein of large eukaryotic DNA viruses; InterPro: IPR003472 The four families of large eukaryotic DNA viruses, Poxviridae, Asfarviridae, Iridoviridae, and Phycodnaviridae, referred to collectively as nucleocytoplasmic large DNA viruses or NCLDV, have all been shown to have a lipid membrane, in spite of the major differences in virion structure. The paralogous genes L1R and F9L encode membrane proteins that have a conserved domain architecture, with a single, C-terminal transmembrane helix, and an N-terminal, multiple-disulphide-bonded domain. The conservation of the myristoylated, disulphide-bonded protein L1R/F9L in most of the NCLDV correlates with the conservation of the thiol-disulphide oxidoreductase E10R which, in vaccinia virus, is required for the formation of disulphide bonds in L1R and F9L [].; PDB: 2I9L_J 1YPY_A.
Probab=21.66 E-value=29 Score=26.84 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=1.0
Q ss_pred chH-HHHHHHHHHHHHHHHh
Q psy7328 140 CGY-WVVIIVLFIANVLVAT 158 (159)
Q Consensus 140 ~~~-~~iI~~L~v~iv~l~~ 158 (159)
.++ |.+|++++++++++++
T Consensus 181 ~g~~~~ii~~vii~~i~~i~ 200 (202)
T PF02442_consen 181 KGIIWFIIIAVIIIIIGLIF 200 (202)
T ss_dssp EE------------------
T ss_pred CChHHHHHHHHHHHHHHHHe
Confidence 455 8887777776666654
No 200
>PHA03231 glycoprotein BALF4; Provisional
Probab=21.57 E-value=3.7e+02 Score=25.51 Aligned_cols=40 Identities=8% Similarity=0.125 Sum_probs=18.7
Q ss_pred CCHHHHH---HHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHH
Q psy7328 61 ANIADVR---EQQQMMIAAQD--------QGLEALSKVISRQKNIALTISN 100 (159)
Q Consensus 61 ~~~~~~~---q~q~~~~~eqD--------~~Ld~l~~~v~~lk~ia~~i~~ 100 (159)
+|.++++ +++.+-+.+.| ..++.|..-+.-|..+|+.++.
T Consensus 630 fDle~m~ReyN~y~qr~~dld~~i~~~~~~~~~gl~~~~~gLG~vGk~vg~ 680 (829)
T PHA03231 630 FDLEEIFREYNLYKQRFYDIDNVIDNDRNAFVRGLAEFMQGLGAVGKAVGN 680 (829)
T ss_pred cCHHHHHHHHHHHHHHHHHhhhhhhcCchHHHHHHHHHHhhhhhhchhhhh
Confidence 5555554 44444444433 2244444444445555554444
No 201
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=21.32 E-value=37 Score=29.44 Aligned_cols=44 Identities=20% Similarity=0.416 Sum_probs=35.5
Q ss_pred HHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHh
Q psy7328 73 MIAAQD-QGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDH 118 (159)
Q Consensus 73 ~~~eqD-~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~ 118 (159)
++.=-| +--|.+-.+++.+|.+...++++|.-|. ||++.+..|.
T Consensus 356 ~~M~FD~ERSD~VyKiLnKlK~v~st~~~~V~hQS--LDdi~~~~ee 400 (445)
T PF13608_consen 356 LMMMFDAERSDCVYKILNKLKGVFSTMGQDVRHQS--LDDIEDIFEE 400 (445)
T ss_pred HHHHhCchhhHHHHHHHHHHHHHHhccCCCccCCC--ccchhhhhhh
Confidence 333344 3468899999999999999999999997 8888887654
No 202
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=21.16 E-value=3.4e+02 Score=19.86 Aligned_cols=51 Identities=14% Similarity=0.276 Sum_probs=23.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHH
Q psy7328 78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETN 128 (159)
Q Consensus 78 D~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~ 128 (159)
.+.+..+...+..+......|..-..+|..-+..+...+............
T Consensus 134 ~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~ 184 (213)
T PF00015_consen 134 SESLEEIAESVEEISDSIEEISESAEEQSESIEQINESIEEISEISEQISA 184 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444445544444444444444444433333
No 203
>TIGR03715 KxYKxGKxW KxYKxGKxW signal peptide. This model describes a novel form of signal peptide that occurs as an N-terminal domain with a recognizable motif, reminiscent of the YSIRK and PEP-CTERM forms of signal peptide. This domain tends to occur on long, low-complexity (usually Serine-rich and heavily glycosylated) proteins of the Firmicutes, and (as with YSIRK) the majority of these proteins have the LPXTG cell wall-anchoring motif at the C-terminus.
Probab=20.94 E-value=1.4e+02 Score=15.36 Aligned_cols=17 Identities=18% Similarity=0.204 Sum_probs=8.9
Q ss_pred CchHHHHHHHHHHHHHH
Q psy7328 139 TCGYWVVIIVLFIANVL 155 (159)
Q Consensus 139 ~~~~~~iI~~L~v~iv~ 155 (159)
+...|+...+.++.++.
T Consensus 9 sGK~Wv~a~~~~~~l~~ 25 (29)
T TIGR03715 9 SGKQWVFAAITTLALAG 25 (29)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 34566665555444443
No 204
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=20.90 E-value=1.5e+02 Score=15.63 Aligned_cols=15 Identities=0% Similarity=0.089 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHHH
Q psy7328 141 GYWVVIIVLFIANVL 155 (159)
Q Consensus 141 ~~~~iI~~L~v~iv~ 155 (159)
.++..++++++..++
T Consensus 9 ~i~ly~~l~~~s~~~ 23 (29)
T TIGR03063 9 QIGLYAVLFLGSGLF 23 (29)
T ss_pred hHHHHHHHHHHHHHH
Confidence 345554444444333
No 205
>PRK09458 pspB phage shock protein B; Provisional
Probab=20.63 E-value=1.1e+02 Score=19.93 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q psy7328 145 VIIVLFIANVLVA 157 (159)
Q Consensus 145 iI~~L~v~iv~l~ 157 (159)
+|+++||+-+.++
T Consensus 11 iiF~ifVaPiWL~ 23 (75)
T PRK09458 11 TIFVLFVAPIWLW 23 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555443
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.49 E-value=4.4e+02 Score=20.94 Aligned_cols=47 Identities=11% Similarity=0.106 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HhhhhHHHHHH
Q psy7328 68 EQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVD----VQNDLVDDITE 114 (159)
Q Consensus 68 q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~----~Q~~~Ld~l~~ 114 (159)
..+.+.+-+.-.+|+.|..-|.+|+..-.....+++ .|.++--+|+.
T Consensus 50 ~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 50 NAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455566677777777777665555555554 55555445544
No 207
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=20.48 E-value=1.2e+02 Score=19.71 Aligned_cols=12 Identities=17% Similarity=0.761 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q psy7328 145 VIIVLFIANVLV 156 (159)
Q Consensus 145 iI~~L~v~iv~l 156 (159)
+|+++||+.+.+
T Consensus 11 ivf~ifVap~WL 22 (75)
T PF06667_consen 11 IVFMIFVAPIWL 22 (75)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 208
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=20.43 E-value=4.1e+02 Score=20.57 Aligned_cols=65 Identities=9% Similarity=0.253 Sum_probs=47.5
Q ss_pred HHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhc
Q psy7328 73 MIAAQDQGLEALSKVI-SRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD 137 (159)
Q Consensus 73 ~~~eqD~~Ld~l~~~v-~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~ 137 (159)
+....++.|+.+...- +.+...-..+..++..-++.+++++..++.-..++..-...|..++.+.
T Consensus 172 i~~~l~~~l~~~~~~~~G~i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~me~~i~~l 237 (239)
T PF07195_consen 172 IATRLNDYLDSYTGSSTGSITSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQFSAMESLISQL 237 (239)
T ss_pred HHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444566666655555 6667777778888888888888888888888888888888777776553
No 209
>TIGR03024 arch_pef_cterm PEF-C-terminal archaeal protein sorting domain. This domain, distantly related to the PEP-Cterm domain described in model TIGR02595, is found in Methanosarcina mazei in four different proteins, as well as in other archaea such as Methanococcoides burtonii. Several proteins with this domain have their genes only a short distance from a distant homology of EpsH, a proposed integral membrane transpeptidase.
Probab=20.18 E-value=1.5e+02 Score=15.26 Aligned_cols=9 Identities=33% Similarity=0.360 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q psy7328 143 WVVIIVLFI 151 (159)
Q Consensus 143 ~~iI~~L~v 151 (159)
|+.|+.+++
T Consensus 8 ~l~I~all~ 16 (26)
T TIGR03024 8 ALPIIALLA 16 (26)
T ss_pred HHHHHHHHH
Confidence 433333333
Done!