Query psy7328
Match_columns 159
No_of_seqs 188 out of 1045
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 23:58:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7328.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7328hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nps_D Syntaxin-6; vesicle fus 99.8 3.9E-20 1.3E-24 122.7 8.1 77 65-141 5-81 (82)
2 1gl2_D Syntaxin 8, vesicle tra 99.7 1.5E-17 5.2E-22 105.5 7.1 64 72-135 2-65 (65)
3 1n7s_D SNAP-25A; neuronal snar 99.6 8.3E-16 2.8E-20 97.7 9.0 62 73-134 4-65 (66)
4 1sfc_D Protein (SNAP-25B), pro 99.6 1.2E-15 4.3E-20 101.9 9.4 65 72-136 22-86 (87)
5 1l4a_D S-SNAP25 fusion protein 99.6 3.7E-15 1.3E-19 99.5 7.4 64 73-136 24-87 (87)
6 3b5n_D Protein transport prote 99.6 1.8E-14 6.3E-19 90.7 8.5 60 74-133 5-64 (64)
7 3hd7_B Syntaxin-1A; membrane p 99.5 6.7E-13 2.3E-17 92.1 11.9 67 72-138 14-80 (109)
8 1jth_B Syntaxin 1A; coiled-coi 99.0 4.5E-09 1.5E-13 68.3 10.2 68 73-140 4-71 (77)
9 2nps_B Syntaxin 13, vesicle-as 98.8 2.6E-08 8.8E-13 63.7 8.9 68 76-143 3-70 (71)
10 3b5n_B Protein SSO1; snare com 98.8 1.4E-07 4.8E-12 59.9 10.4 65 73-137 4-68 (69)
11 1sfc_B Protein (syntaxin 1A), 98.7 2.1E-07 7.3E-12 61.1 10.5 68 72-139 14-81 (83)
12 1n7s_B Syntaxin 1A; neuronal s 98.7 3.3E-07 1.1E-11 58.0 9.7 62 73-134 6-67 (68)
13 1gl2_B Syntaxin 7; membrane pr 98.7 1.7E-07 5.9E-12 58.8 8.2 62 73-134 3-64 (65)
14 1dn1_B Syntaxin 1A, syntaxin b 98.3 6.9E-07 2.3E-11 70.6 4.6 77 69-145 190-266 (267)
15 3hd7_B Syntaxin-1A; membrane p 97.8 0.00073 2.5E-08 46.3 11.8 65 69-133 18-82 (109)
16 2xhe_B Syntaxin1; exocytosis, 97.7 2.9E-05 9.8E-10 61.5 4.0 67 73-139 211-277 (279)
17 1n7s_C SNAP-25A; neuronal snar 97.6 0.002 6.8E-08 41.6 11.5 70 65-134 6-78 (79)
18 3hd7_A Vesicle-associated memb 97.3 0.0034 1.2E-07 41.5 9.7 37 82-118 8-44 (91)
19 1nhl_A Synaptosomal-associated 97.0 0.004 1.4E-07 37.2 7.3 49 84-132 5-53 (54)
20 1l4a_C S-SNAP25 fusion protein 96.9 0.0049 1.7E-07 40.1 7.2 65 69-133 14-81 (83)
21 3b5n_C Protein transport prote 96.6 0.032 1.1E-06 35.0 9.4 59 77-135 7-68 (70)
22 2nps_C Vesicle transport throu 96.6 0.06 2.1E-06 34.6 10.7 66 72-137 12-77 (81)
23 1gl2_C VTI1B, vesicle transpor 96.5 0.015 5E-07 36.0 7.2 59 76-134 6-64 (65)
24 3c98_B Syntaxin-1A; protein co 96.3 0.00079 2.7E-08 51.9 0.3 75 71-145 204-278 (279)
25 2kog_A Vesicle-associated memb 94.8 0.0025 8.7E-08 44.3 -1.5 32 101-132 55-89 (119)
26 3hd7_A Vesicle-associated memb 90.9 2.2 7.6E-05 27.7 11.4 27 109-135 38-64 (91)
27 1ic2_A Tropomyosin alpha chain 67.4 20 0.00068 22.4 11.3 62 79-140 20-81 (81)
28 3oja_B Anopheles plasmodium-re 63.1 66 0.0023 26.9 12.9 61 78-138 522-582 (597)
29 1fjk_A Cardiac phospholamban; 61.6 3.9 0.00013 23.1 1.5 14 143-156 37-50 (52)
30 1fio_A SSO1 protein; four heli 60.9 3.7 0.00013 29.8 1.8 35 72-106 162-196 (196)
31 3p8c_F ABL interactor 2; actin 54.8 55 0.0019 23.4 8.2 47 79-125 54-100 (159)
32 3efg_A Protein SLYX homolog; x 51.4 42 0.0014 20.9 6.4 48 78-125 13-60 (78)
33 1sfc_A VAMP 2, protein (synapt 38.3 79 0.0027 20.4 8.8 17 102-118 53-69 (96)
34 1jth_B Syntaxin 1A; coiled-coi 36.6 72 0.0025 19.4 10.0 60 72-131 10-69 (77)
35 3ghg_A Fibrinogen alpha chain; 36.4 2E+02 0.0069 24.5 9.6 48 90-137 114-161 (562)
36 3oja_A Leucine-rich immune mol 33.7 1.9E+02 0.0065 23.4 11.8 67 68-134 417-483 (487)
37 2ic6_A Nucleocapsid protein; h 33.2 53 0.0018 20.6 3.6 23 4-26 47-69 (78)
38 1yod_A Water-solublized phosph 32.2 37 0.0013 17.1 2.2 14 142-155 15-28 (30)
39 3na7_A HP0958; flagellar bioge 32.1 1.6E+02 0.0054 22.1 9.7 55 78-132 31-85 (256)
40 1m1j_B Fibrinogen beta chain; 30.4 2.4E+02 0.0082 23.6 11.7 30 74-103 102-131 (464)
41 3a7p_A Autophagy protein 16; c 30.1 1.5E+02 0.005 21.0 9.5 59 78-136 67-125 (152)
42 2kwh_A RAla-binding protein 1; 29.9 40 0.0014 19.8 2.5 21 96-116 6-26 (56)
43 3nmd_A CGMP dependent protein 28.6 1.1E+02 0.0036 18.9 6.6 12 107-118 40-51 (72)
44 1gmj_A ATPase inhibitor; coile 27.7 1.2E+02 0.0041 19.2 6.8 28 99-126 50-77 (84)
45 4fi5_A Nucleoprotein; structur 27.5 69 0.0024 21.5 3.6 23 4-26 64-86 (113)
46 2ic9_A Nucleocapsid protein; h 26.2 79 0.0027 20.6 3.6 23 4-26 47-69 (96)
47 3din_D Preprotein translocase 23.9 1E+02 0.0036 18.2 3.7 13 122-134 7-19 (65)
48 1a93_B MAX protein, coiled coi 23.6 48 0.0016 17.4 1.8 12 100-111 17-28 (34)
49 2knc_A Integrin alpha-IIB; tra 23.5 53 0.0018 19.1 2.2 11 140-150 10-20 (54)
50 2l5g_B Putative uncharacterize 23.4 1E+02 0.0035 16.9 4.5 30 107-136 9-38 (42)
51 1skh_A Major prion protein 2; 23.1 36 0.0012 17.3 1.2 8 145-152 9-16 (30)
52 2l8s_A Integrin alpha-1; trans 23.0 49 0.0017 19.3 2.0 7 142-148 9-15 (54)
53 1svf_B Protein (fusion glycopr 22.8 93 0.0032 16.5 3.0 23 109-131 14-36 (38)
54 3zrx_A AF1503 protein, osmolar 22.7 1.3E+02 0.0045 18.0 7.9 8 83-90 52-59 (115)
55 1ezj_A Nucleocapsid phosphopro 22.1 1.7E+02 0.006 19.1 5.9 38 73-110 67-104 (115)
56 1tjl_A DNAK suppressor protein 21.9 2.1E+02 0.0071 19.9 8.0 32 61-92 32-63 (151)
57 2lx0_A Membrane fusion protein 21.8 83 0.0029 15.7 2.4 18 141-158 4-21 (32)
58 3ghg_A Fibrinogen alpha chain; 21.6 2.2E+02 0.0075 24.3 6.3 43 76-118 114-156 (562)
59 1pi7_A VPU protein, U ORF prot 20.9 53 0.0018 17.4 1.7 7 148-154 10-16 (36)
60 1qu7_A Methyl-accepting chemot 20.3 2.6E+02 0.009 20.5 9.2 62 72-133 140-201 (227)
61 3p8c_D Wiskott-aldrich syndrom 20.0 3.1E+02 0.011 21.2 7.9 30 106-135 49-78 (279)
No 1
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=99.82 E-value=3.9e-20 Score=122.66 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCch
Q psy7328 65 DVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCG 141 (159)
Q Consensus 65 ~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~ 141 (159)
..++.|++++++||+.|+.|+.+|++||++|.+||+||+.||++||+|+++||+|..+|+.+++++++++++++++|
T Consensus 5 a~~q~Q~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~~ 81 (82)
T 2nps_D 5 ASMTGGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRR 81 (82)
T ss_dssp -------------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999988775
No 2
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.72 E-value=1.5e-17 Score=105.50 Aligned_cols=64 Identities=38% Similarity=0.599 Sum_probs=53.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHh
Q psy7328 72 MMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILT 135 (159)
Q Consensus 72 ~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~ 135 (159)
++|++||+.|+.|+.+|++||++|.+||+||+.||++||+++++||++..+|+.++++++++.+
T Consensus 2 ~~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~k 65 (65)
T 1gl2_D 2 SHMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR 65 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5789999999999999999999999999999999999999999999999999999999998764
No 3
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=99.65 E-value=8.3e-16 Score=97.69 Aligned_cols=62 Identities=31% Similarity=0.498 Sum_probs=59.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHH
Q psy7328 73 MIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL 134 (159)
Q Consensus 73 ~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~ 134 (159)
+-.+||+.|+.|+.+|++||++|.+||+||+.||++||+|+++||++..+|+.+++++++++
T Consensus 4 ~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ll 65 (66)
T 1n7s_D 4 RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHc
Confidence 34689999999999999999999999999999999999999999999999999999999875
No 4
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.64 E-value=1.2e-15 Score=101.91 Aligned_cols=65 Identities=29% Similarity=0.467 Sum_probs=61.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhh
Q psy7328 72 MMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQ 136 (159)
Q Consensus 72 ~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~ 136 (159)
.+.++||+.|+.|+.+|++||++|.+||+||+.||++||+|+++||++..+|..+++++++++++
T Consensus 22 ~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k 86 (87)
T 1sfc_D 22 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS 86 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 35579999999999999999999999999999999999999999999999999999999998875
No 5
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.58 E-value=3.7e-15 Score=99.51 Aligned_cols=64 Identities=22% Similarity=0.410 Sum_probs=59.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhh
Q psy7328 73 MIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQ 136 (159)
Q Consensus 73 ~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~ 136 (159)
...+||+.|+.|+.+|++||++|.+||.||+.||++||+|+++||++..+|..+++++++++++
T Consensus 24 ~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~k 87 (87)
T 1l4a_D 24 REDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLKN 87 (87)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC--
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3468999999999999999999999999999999999999999999999999999999998763
No 6
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.8e-14 Score=90.74 Aligned_cols=60 Identities=28% Similarity=0.473 Sum_probs=57.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHH
Q psy7328 74 IAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSI 133 (159)
Q Consensus 74 ~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~ 133 (159)
-+++|+.|+.|+..+++||++|.+||+||+.||++||+|+.++|++..++..+++|++++
T Consensus 5 E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~i 64 (64)
T 3b5n_D 5 ELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAGI 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 468999999999999999999999999999999999999999999999999999999864
No 7
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.48 E-value=6.7e-13 Score=92.12 Aligned_cols=67 Identities=13% Similarity=0.264 Sum_probs=62.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcC
Q psy7328 72 MMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDA 138 (159)
Q Consensus 72 ~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~ 138 (159)
..+++.++.+..|..++..|++++.+++..|.+|++++|+++++++.|...+..+++.++++.++.+
T Consensus 14 ~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk 80 (109)
T 3hd7_B 14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQS 80 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667889999999999999999999999999999999999999999999999999999999977654
No 8
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.01 E-value=4.5e-09 Score=68.31 Aligned_cols=68 Identities=13% Similarity=0.270 Sum_probs=61.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCc
Q psy7328 73 MIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATC 140 (159)
Q Consensus 73 ~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~ 140 (159)
.+++..+.+..|..++..|++++.+++.-|.+|+++||+|+.+|+.|...+..+...+.+..++.++.
T Consensus 4 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~ 71 (77)
T 1jth_B 4 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKA 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46678889999999999999999999999999999999999999999999999999999999876543
No 9
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=98.84 E-value=2.6e-08 Score=63.69 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=60.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHH
Q psy7328 76 AQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYW 143 (159)
Q Consensus 76 eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~ 143 (159)
+..+.+..|..++..|++|+.+++.-|.+|+++||+|+.+|+.|...+..+...|.+..++.++.+.|
T Consensus 3 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~ 70 (71)
T 2nps_B 3 MRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKK 70 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 45778999999999999999999999999999999999999999999999999999999876554333
No 10
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=98.76 E-value=1.4e-07 Score=59.90 Aligned_cols=65 Identities=15% Similarity=0.226 Sum_probs=61.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhc
Q psy7328 73 MIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD 137 (159)
Q Consensus 73 ~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~ 137 (159)
.+.+..+.+..|..++..|++|+.+++.-|.+|+++||+|+.+|+.|...+..+...+++..++.
T Consensus 4 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q 68 (69)
T 3b5n_B 4 EVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSA 68 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46778899999999999999999999999999999999999999999999999999999988754
No 11
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=98.71 E-value=2.1e-07 Score=61.12 Aligned_cols=68 Identities=13% Similarity=0.261 Sum_probs=63.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCC
Q psy7328 72 MMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDAT 139 (159)
Q Consensus 72 ~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~ 139 (159)
..+.+..+.+..|..++..|++|+.+++.-|.+|+++||+|+.+|+.|...+..+...|.+..++.++
T Consensus 14 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~ 81 (83)
T 1sfc_B 14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSK 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 35778889999999999999999999999999999999999999999999999999999999887654
No 12
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=98.65 E-value=3.3e-07 Score=57.98 Aligned_cols=62 Identities=15% Similarity=0.290 Sum_probs=58.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHH
Q psy7328 73 MIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL 134 (159)
Q Consensus 73 ~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~ 134 (159)
.+.+..+.+..|..++..|++++.+++.-|.+|+++||+|+.+|+.|...+..+...+++..
T Consensus 6 ~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 6 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56678889999999999999999999999999999999999999999999999999998864
No 13
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=98.65 E-value=1.7e-07 Score=58.81 Aligned_cols=62 Identities=16% Similarity=0.295 Sum_probs=56.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHH
Q psy7328 73 MIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL 134 (159)
Q Consensus 73 ~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~ 134 (159)
.+.+..+.+..|..++..|++|+.+++.-|.+|+++||+|+.+|+.|...+..+...|++..
T Consensus 3 ~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 3 HMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35567788999999999999999999999999999999999999999999999999998754
No 14
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=98.26 E-value=6.9e-07 Score=70.61 Aligned_cols=77 Identities=13% Similarity=0.215 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHHHH
Q psy7328 69 QQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVV 145 (159)
Q Consensus 69 ~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~~i 145 (159)
..-..+.+..+.+..|..++..|++|+.+++.-|.+|+++||+|+.+|+.|...+..|...|.++.++.++.+.|.|
T Consensus 190 ~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~ 266 (267)
T 1dn1_B 190 QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 266 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 34456778889999999999999999999999999999999999999999999999999999999987765444433
No 15
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.77 E-value=0.00073 Score=46.27 Aligned_cols=65 Identities=6% Similarity=0.097 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHH
Q psy7328 69 QQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSI 133 (159)
Q Consensus 69 ~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~ 133 (159)
...+.+.+.+..+..|+.....+..+-..=|+-++.=..-++...++++.+...|+.|.+.=++.
T Consensus 18 eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~ 82 (109)
T 3hd7_B 18 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKA 82 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445678888899999999999988888888898888889999999999999999998664443
No 16
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=97.68 E-value=2.9e-05 Score=61.45 Aligned_cols=67 Identities=15% Similarity=0.268 Sum_probs=48.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCC
Q psy7328 73 MIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDAT 139 (159)
Q Consensus 73 ~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~ 139 (159)
.+.+..+.+..|..+|..|++|+.+++.-|.+|+++||+|+.+|+.|...+..|...|.+..++.++
T Consensus 211 ~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk~ 277 (279)
T 2xhe_B 211 EIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQES 277 (279)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 4567788999999999999999999999999999999999999999999999999999998876543
No 17
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=97.62 E-value=0.002 Score=41.62 Aligned_cols=70 Identities=19% Similarity=0.315 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHH
Q psy7328 65 DVREQQQMMIAAQDQGLEAL---SKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL 134 (159)
Q Consensus 65 ~~~q~q~~~~~eqD~~Ld~l---~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~ 134 (159)
++.+.+++.....++.++.+ ...+....++|..+-.+|..|.+.|++++..++.+...|+++.+.|+.+.
T Consensus 6 ~~q~l~~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~ 78 (79)
T 1n7s_C 6 ELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence 34444555555555555554 45555778899999999999999999999999999999999999888764
No 18
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.30 E-value=0.0034 Score=41.53 Aligned_cols=37 Identities=11% Similarity=0.188 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHh
Q psy7328 82 EALSKVISRQKNIALTISNEVDVQNDLVDDITERMDH 118 (159)
Q Consensus 82 d~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~ 118 (159)
..+..-+...+.+-..=-+.+-+-++-||.+.+..+.
T Consensus 8 ~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~ 44 (91)
T 3hd7_A 8 QQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 44 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 3333334444433333333334444555555554443
No 19
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=97.05 E-value=0.004 Score=37.21 Aligned_cols=49 Identities=14% Similarity=0.283 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHH
Q psy7328 84 LSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTS 132 (159)
Q Consensus 84 l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~ 132 (159)
....+....++|..+-.+|..|.+.|++++..++.++..++.+.+.|..
T Consensus 5 ~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~ 53 (54)
T 1nhl_A 5 ILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTE 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhc
Confidence 3456677888999999999999999999999999999999999987753
No 20
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=96.88 E-value=0.0049 Score=40.14 Aligned_cols=65 Identities=20% Similarity=0.296 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHH
Q psy7328 69 QQQMMIAAQDQGLEALSKV---ISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSI 133 (159)
Q Consensus 69 ~q~~~~~eqD~~Ld~l~~~---v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~ 133 (159)
.++++..-+++.++..... +..-+..|...-.+|..|++.|++++.++|.....++.+-+.|+.+
T Consensus 14 l~~~~~~~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L 81 (83)
T 1l4a_C 14 IQQQCNQVTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGM 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC-
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444556556555544 4556679999999999999999999999999999999888766543
No 21
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=96.63 E-value=0.032 Score=35.02 Aligned_cols=59 Identities=7% Similarity=0.178 Sum_probs=47.7
Q ss_pred HHHhHHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHh
Q psy7328 77 QDQGLEALSKV---ISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILT 135 (159)
Q Consensus 77 qD~~Ld~l~~~---v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~ 135 (159)
.++.++.-... +..-...|...-.+|..|++.|++++.++|.+...++.+.++++.+-+
T Consensus 7 ~~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~ 68 (70)
T 3b5n_C 7 KQSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34445444444 445566899999999999999999999999999999999999988654
No 22
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=96.57 E-value=0.06 Score=34.64 Aligned_cols=66 Identities=14% Similarity=0.246 Sum_probs=59.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhc
Q psy7328 72 MMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD 137 (159)
Q Consensus 72 ~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~ 137 (159)
+.++.-.+.|..-...+....++|..|-.+|..|.+.|.+..+.++.++..+.++.+.|+.+.+..
T Consensus 12 ~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~ 77 (81)
T 2nps_C 12 ERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRI 77 (81)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Confidence 344666778888899999999999999999999999999999999999999999999999988764
No 23
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=96.52 E-value=0.015 Score=36.01 Aligned_cols=59 Identities=19% Similarity=0.304 Sum_probs=51.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHH
Q psy7328 76 AQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL 134 (159)
Q Consensus 76 eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~ 134 (159)
+-.+.|..-...+....++|..|-.+|..|.+.|.+....++.++..|.++.+.|+.+.
T Consensus 6 ~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~ 64 (65)
T 1gl2_C 6 RATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMS 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhc
Confidence 34566777788888999999999999999999999999999999999999998887653
No 24
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=96.26 E-value=0.00079 Score=51.88 Aligned_cols=75 Identities=12% Similarity=0.210 Sum_probs=53.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHHHH
Q psy7328 71 QMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWVV 145 (159)
Q Consensus 71 ~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~~i 145 (159)
...+.+..+.+..|...+..+.+++..|..-+.+|...+++|+.+|+.+...+..+...+.+...+.+..+.|-|
T Consensus 204 ~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkkk~ 278 (279)
T 3c98_B 204 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 278 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence 345667788999999999999999999999999999999999999999999999999999998877665444433
No 25
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=94.79 E-value=0.0025 Score=44.25 Aligned_cols=32 Identities=9% Similarity=0.246 Sum_probs=16.4
Q ss_pred HHHHhhhhHHHHHHhHHhh---hHHHHHHHHHHHH
Q psy7328 101 EVDVQNDLVDDITERMDHT---NVSIQRETNQVTS 132 (159)
Q Consensus 101 El~~Q~~~Ld~l~~~vd~t---~~~l~~~~~~l~~ 132 (159)
.+-+-++-||.|.+..+.- ....++..+++++
T Consensus 55 kvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~r 89 (119)
T 2kog_A 55 KVLERDQKLSELDDRADALQAGASQFETSAAKLKR 89 (119)
T ss_dssp HHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566666666555543 3444444444444
No 26
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=90.90 E-value=2.2 Score=27.69 Aligned_cols=27 Identities=7% Similarity=0.160 Sum_probs=14.6
Q ss_pred HHHHHHhHHhhhHHHHHHHHHHHHHHh
Q psy7328 109 VDDITERMDHTNVSIQRETNQVTSILT 135 (159)
Q Consensus 109 Ld~l~~~vd~t~~~l~~~~~~l~~~~~ 135 (159)
|.+-.+++.......++..+++++-+-
T Consensus 38 L~~kt~~L~~~s~~F~~~A~~l~rkmw 64 (91)
T 3hd7_A 38 LDDRADALQAGASQFETSAAKLKRKYW 64 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555556666666665443
No 27
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=67.41 E-value=20 Score=22.39 Aligned_cols=62 Identities=8% Similarity=0.141 Sum_probs=49.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCc
Q psy7328 79 QGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATC 140 (159)
Q Consensus 79 ~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~ 140 (159)
+.++.+...+.....-+.....|+..-+.-+-.+.+++|++..++..++.+|...-+....|
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~~~~ 81 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKATDC 81 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC--
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44555666666666778888999999999999999999999999999999998876654433
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=63.11 E-value=66 Score=26.88 Aligned_cols=61 Identities=7% Similarity=0.032 Sum_probs=43.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcC
Q psy7328 78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDA 138 (159)
Q Consensus 78 D~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~ 138 (159)
...+......+...+.....+..|++.-...++.....+......+.....+++.+..+..
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 522 LRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445556666666667777777777777777777777777777777788888888776653
No 29
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=61.59 E-value=3.9 Score=23.12 Aligned_cols=14 Identities=21% Similarity=0.600 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q psy7328 143 WVVIIVLFIANVLV 156 (159)
Q Consensus 143 ~~iI~~L~v~iv~l 156 (159)
.++||+|++.||++
T Consensus 37 lilicllli~iivm 50 (52)
T 1fjk_A 37 LILIFLLLICIIVM 50 (52)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555543
No 30
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=60.90 E-value=3.7 Score=29.75 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=30.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy7328 72 MMIAAQDQGLEALSKVISRQKNIALTISNEVDVQN 106 (159)
Q Consensus 72 ~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~ 106 (159)
..+.+.++.+-.|..+|..|++|+.+|+.-|.+|+
T Consensus 162 ~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 162 AEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45678889999999999999999999998877764
No 31
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=54.80 E-value=55 Score=23.37 Aligned_cols=47 Identities=13% Similarity=0.224 Sum_probs=41.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHH
Q psy7328 79 QGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQR 125 (159)
Q Consensus 79 ~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~ 125 (159)
-.-..|...+-.+..+|..+-.-|+.|...++.++..|......+.-
T Consensus 54 Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v~i 100 (159)
T 3p8c_F 54 YTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDI 100 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999987776644
No 32
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=51.44 E-value=42 Score=20.94 Aligned_cols=48 Identities=15% Similarity=0.075 Sum_probs=31.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHH
Q psy7328 78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQR 125 (159)
Q Consensus 78 D~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~ 125 (159)
++-+..|...+.-+-..-..+++.|-.|...||.+...+.....+++.
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666677777777777777777766665555544
No 33
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=38.33 E-value=79 Score=20.36 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=8.1
Q ss_pred HHHhhhhHHHHHHhHHh
Q psy7328 102 VDVQNDLVDDITERMDH 118 (159)
Q Consensus 102 l~~Q~~~Ld~l~~~vd~ 118 (159)
|-+-++-||.|.+..+.
T Consensus 53 vLeRGEkLd~L~dkse~ 69 (96)
T 1sfc_A 53 VLERDQKLSELDDRADA 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHH
Confidence 33445555555544443
No 34
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=36.64 E-value=72 Score=19.41 Aligned_cols=60 Identities=7% Similarity=0.094 Sum_probs=49.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHH
Q psy7328 72 MMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVT 131 (159)
Q Consensus 72 ~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~ 131 (159)
+-+.+....+..|+.....+..+-..=|+-|+.=..-++.....|+.+...|..|.+.-+
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~ 69 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQS 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888888888888888888888888888889999999999999999886443
No 35
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=36.42 E-value=2e+02 Score=24.55 Aligned_cols=48 Identities=6% Similarity=0.038 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhc
Q psy7328 90 RQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQD 137 (159)
Q Consensus 90 ~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~ 137 (159)
.|+.--..|..+|+.|-..|.-|...++.-..+|++--.-+..-++..
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsC 161 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSC 161 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555555666677777777777777777777777766555444444443
No 36
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.74 E-value=1.9e+02 Score=23.44 Aligned_cols=67 Identities=9% Similarity=0.055 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHH
Q psy7328 68 EQQQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSIL 134 (159)
Q Consensus 68 q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~ 134 (159)
..+..+..+.+...+.+..-.....+-...+.+|-..+.+.+++++..+..+...++.+..+=..+.
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (487)
T 3oja_A 417 KRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLA 483 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHH
Confidence 3344444444555555555555555555556666667778888888888888888888776655443
No 37
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=33.16 E-value=53 Score=20.60 Aligned_cols=23 Identities=9% Similarity=0.200 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q psy7328 4 FERRQRLLEQLQSSSVKITNMYN 26 (159)
Q Consensus 4 ~~rR~~~v~~L~~~~~~l~~~~~ 26 (159)
+.+|+..|..|+.++.+|+..+.
T Consensus 47 ~~~R~~~V~~lq~Ki~elkrqlA 69 (78)
T 2ic6_A 47 LQSRRAAVSALETKLGELKRELA 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999998864
No 38
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=32.21 E-value=37 Score=17.06 Aligned_cols=14 Identities=7% Similarity=-0.296 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q psy7328 142 YWVVIIVLFIANVL 155 (159)
Q Consensus 142 ~~~iI~~L~v~iv~ 155 (159)
+...|+++++-|++
T Consensus 15 cLilICllLi~Iiv 28 (30)
T 1yod_A 15 CLREICQELKEIRA 28 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555555544
No 39
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=32.14 E-value=1.6e+02 Score=22.06 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=42.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHH
Q psy7328 78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTS 132 (159)
Q Consensus 78 D~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~ 132 (159)
-..+..+...+..++.-...+..++++-..-+.+++.+++.+..++.+...++..
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3556677777777777777778888888888888888888888888888877754
No 40
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=30.42 E-value=2.4e+02 Score=23.56 Aligned_cols=30 Identities=10% Similarity=0.092 Sum_probs=16.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7328 74 IAAQDQGLEALSKVISRQKNIALTISNEVD 103 (159)
Q Consensus 74 ~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~ 103 (159)
+++.+..|+.|+.+....++.-..|...+.
T Consensus 102 LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk 131 (464)
T 1m1j_B 102 LRDLKDRVAKFSDTSTTMYQYVNMIDNKLV 131 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 455556666666655554444444544443
No 41
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=30.06 E-value=1.5e+02 Score=20.99 Aligned_cols=59 Identities=7% Similarity=0.126 Sum_probs=48.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhh
Q psy7328 78 DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQ 136 (159)
Q Consensus 78 D~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~ 136 (159)
...+..|..-+..+..=-.+...|+.+.++.++.+.+.....+-.+.....+++++-.-
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677777777777777778888999999999999999998888888888888877653
No 42
>2kwh_A RAla-binding protein 1; GTPase activation, transport protein; NMR {Homo sapiens} PDB: 2kwi_B*
Probab=29.92 E-value=40 Score=19.75 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhhhHHHHHHhH
Q psy7328 96 LTISNEVDVQNDLVDDITERM 116 (159)
Q Consensus 96 ~~i~~El~~Q~~~Ld~l~~~v 116 (159)
..|..|+..|..+|+.|...+
T Consensus 6 e~I~~El~kQe~lL~~LH~e~ 26 (56)
T 2kwh_A 6 AGIKEEIRRQEFLLNSLHRDL 26 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999998877
No 43
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.57 E-value=1.1e+02 Score=18.90 Aligned_cols=12 Identities=25% Similarity=0.645 Sum_probs=4.3
Q ss_pred hhHHHHHHhHHh
Q psy7328 107 DLVDDITERMDH 118 (159)
Q Consensus 107 ~~Ld~l~~~vd~ 118 (159)
..++.++..++.
T Consensus 40 ~~I~eLEk~L~e 51 (72)
T 3nmd_A 40 ALIDELELELDQ 51 (72)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 44
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.73 E-value=1.2e+02 Score=19.24 Aligned_cols=28 Identities=14% Similarity=0.360 Sum_probs=21.9
Q ss_pred HHHHHHhhhhHHHHHHhHHhhhHHHHHH
Q psy7328 99 SNEVDVQNDLVDDITERMDHTNVSIQRE 126 (159)
Q Consensus 99 ~~El~~Q~~~Ld~l~~~vd~t~~~l~~~ 126 (159)
-+||+.|.+-|++++..+++...+|+.-
T Consensus 50 ~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 50 ENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6789999999999988887766666543
No 45
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=27.53 E-value=69 Score=21.48 Aligned_cols=23 Identities=9% Similarity=0.161 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q psy7328 4 FERRQRLLEQLQSSSVKITNMYN 26 (159)
Q Consensus 4 ~~rR~~~v~~L~~~~~~l~~~~~ 26 (159)
+.+|+..|..|++++.+|+..+.
T Consensus 64 l~~R~~~Vs~lq~KiaeLKrqLA 86 (113)
T 4fi5_A 64 LTDREGVAVSIQAKIDELKRQLA 86 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999875
No 46
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=26.18 E-value=79 Score=20.62 Aligned_cols=23 Identities=9% Similarity=0.200 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q psy7328 4 FERRQRLLEQLQSSSVKITNMYN 26 (159)
Q Consensus 4 ~~rR~~~v~~L~~~~~~l~~~~~ 26 (159)
+.+|+..|..|+.++.+|+..+.
T Consensus 47 ~~~R~~~V~~lq~Ki~elkr~lA 69 (96)
T 2ic9_A 47 LQSRRAAVSALETKLGELKRELA 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999875
No 47
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=23.92 E-value=1e+02 Score=18.17 Aligned_cols=13 Identities=8% Similarity=0.033 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q psy7328 122 SIQRETNQVTSIL 134 (159)
Q Consensus 122 ~l~~~~~~l~~~~ 134 (159)
-++.....++|+.
T Consensus 7 f~~~v~~ElkKV~ 19 (65)
T 3din_D 7 FFREVIAEAKKIS 19 (65)
T ss_dssp ---CHHHHHHHHH
T ss_pred HHHHHHHHHhccc
Confidence 3455556666665
No 48
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=23.62 E-value=48 Score=17.43 Aligned_cols=12 Identities=25% Similarity=0.579 Sum_probs=7.7
Q ss_pred HHHHHhhhhHHH
Q psy7328 100 NEVDVQNDLVDD 111 (159)
Q Consensus 100 ~El~~Q~~~Ld~ 111 (159)
++++.||.+|+.
T Consensus 17 ddlkrQN~~Le~ 28 (34)
T 1a93_B 17 DDLKRQNALLEQ 28 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 366677777654
No 49
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=23.45 E-value=53 Score=19.08 Aligned_cols=11 Identities=18% Similarity=0.546 Sum_probs=5.0
Q ss_pred chHHHHHHHHH
Q psy7328 140 CGYWVVIIVLF 150 (159)
Q Consensus 140 ~~~~~iI~~L~ 150 (159)
-..|++++..+
T Consensus 10 vp~wiIi~svl 20 (54)
T 2knc_A 10 IPIWWVLVGVL 20 (54)
T ss_dssp CCHHHHHHHHH
T ss_pred cchHHHHHHHH
Confidence 34555544333
No 50
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.38 E-value=1e+02 Score=16.92 Aligned_cols=30 Identities=7% Similarity=0.173 Sum_probs=21.8
Q ss_pred hhHHHHHHhHHhhhHHHHHHHHHHHHHHhh
Q psy7328 107 DLVDDITERMDHTNVSIQRETNQVTSILTQ 136 (159)
Q Consensus 107 ~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~ 136 (159)
..+|+++...++|..++..-.++++.+...
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346777888888888888777777776543
No 51
>1skh_A Major prion protein 2; coil-helix-coil, unknown function; NMR {Bos taurus}
Probab=23.10 E-value=36 Score=17.32 Aligned_cols=8 Identities=63% Similarity=1.003 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q psy7328 145 VIIVLFIA 152 (159)
Q Consensus 145 iI~~L~v~ 152 (159)
+|++|||+
T Consensus 9 wilvLfva 16 (30)
T 1skh_A 9 WILVLFVA 16 (30)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34445554
No 52
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=23.04 E-value=49 Score=19.26 Aligned_cols=7 Identities=29% Similarity=1.203 Sum_probs=3.2
Q ss_pred HHHHHHH
Q psy7328 142 YWVVIIV 148 (159)
Q Consensus 142 ~~~iI~~ 148 (159)
.|++++.
T Consensus 9 ~WiIi~s 15 (54)
T 2l8s_A 9 LWVILLS 15 (54)
T ss_dssp THHHHHH
T ss_pred hHHHHHH
Confidence 4554433
No 53
>1svf_B Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=22.84 E-value=93 Score=16.53 Aligned_cols=23 Identities=0% Similarity=0.173 Sum_probs=12.9
Q ss_pred HHHHHHhHHhhhHHHHHHHHHHH
Q psy7328 109 VDDITERMDHTNVSIQRETNQVT 131 (159)
Q Consensus 109 Ld~l~~~vd~t~~~l~~~~~~l~ 131 (159)
|..++..++.+...|..++..+.
T Consensus 14 L~~~n~sl~~A~~~l~~Sn~~L~ 36 (38)
T 1svf_B 14 LAAVNKSLSDALQHLAQSDTYLS 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666555544
No 54
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=22.70 E-value=1.3e+02 Score=17.97 Aligned_cols=8 Identities=13% Similarity=0.331 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q psy7328 83 ALSKVISR 90 (159)
Q Consensus 83 ~l~~~v~~ 90 (159)
.+...+..
T Consensus 52 ~l~~~~~~ 59 (115)
T 3zrx_A 52 SLKQLADD 59 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333334
No 55
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=22.09 E-value=1.7e+02 Score=19.15 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=26.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q psy7328 73 MIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVD 110 (159)
Q Consensus 73 ~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld 110 (159)
-.+|.|..|.++...+..+|++-....+-=.+|+.++-
T Consensus 67 kv~en~~~L~QIQ~ei~s~rd~hkR~~E~QkEQ~SL~~ 104 (115)
T 1ezj_A 67 KVDENKQLLKQIQESVESFRDIYKRFSEYQKEQNSLLM 104 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34567777788888888888777776666666666553
No 56
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=21.88 E-value=2.1e+02 Score=19.93 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy7328 61 ANIADVREQQQMMIAAQDQGLEALSKVISRQK 92 (159)
Q Consensus 61 ~~~~~~~q~q~~~~~eqD~~Ld~l~~~v~~lk 92 (159)
|+..++..+...+.....+.+..+......+.
T Consensus 32 M~~~ql~~fr~~L~~~k~eL~~~l~~~~~~~~ 63 (151)
T 1tjl_A 32 MNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQ 63 (151)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888877777777777777777776655444
No 57
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=21.75 E-value=83 Score=15.67 Aligned_cols=18 Identities=28% Similarity=0.314 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHh
Q psy7328 141 GYWVVIIVLFIANVLVAT 158 (159)
Q Consensus 141 ~~~~iI~~L~v~iv~l~~ 158 (159)
.+|-+|..|+.++-++++
T Consensus 4 tiweviaglvalltflaf 21 (32)
T 2lx0_A 4 TIWEVIAGLVALLTFLAF 21 (32)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 367777777766655543
No 58
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.57 E-value=2.2e+02 Score=24.33 Aligned_cols=43 Identities=12% Similarity=0.102 Sum_probs=26.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHh
Q psy7328 76 AQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDH 118 (159)
Q Consensus 76 eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~ 118 (159)
+..+.+..|...|......=..+..-|++|..-|-+|+.++|-
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555554444456666777777777788777764
No 59
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=20.88 E-value=53 Score=17.45 Aligned_cols=7 Identities=29% Similarity=0.477 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy7328 148 VLFIANV 154 (159)
Q Consensus 148 ~L~v~iv 154 (159)
.|+++++
T Consensus 10 alivalI 16 (36)
T 1pi7_A 10 ALVVAII 16 (36)
T ss_pred HHHHHHH
Confidence 3333333
No 60
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=20.32 E-value=2.6e+02 Score=20.51 Aligned_cols=62 Identities=13% Similarity=0.216 Sum_probs=42.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHH
Q psy7328 72 MMIAAQDQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSI 133 (159)
Q Consensus 72 ~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~ 133 (159)
..+.+-.+.++.+...+..+......|..-.++|..-.+.+...++....-.......+..+
T Consensus 140 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~ 201 (227)
T 1qu7_A 140 TLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEQS 201 (227)
T ss_dssp HHHHHHTTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556677777788888888888888888888888888877777655555444444433
No 61
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=20.02 E-value=3.1e+02 Score=21.24 Aligned_cols=30 Identities=7% Similarity=0.206 Sum_probs=18.3
Q ss_pred hhhHHHHHHhHHhhhHHHHHHHHHHHHHHh
Q psy7328 106 NDLVDDITERMDHTNVSIQRETNQVTSILT 135 (159)
Q Consensus 106 ~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~ 135 (159)
.++..+|..++..+..++..-..|+.++..
T Consensus 49 ~dIF~eL~~e~~~~~~R~~~L~~RI~~L~~ 78 (279)
T 3p8c_D 49 EDIFGELFNEAHSFSFRVNSLQERVDRLSV 78 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666553
Done!