Query psy7328
Match_columns 159
No_of_seqs 188 out of 1045
Neff 7.8
Searched_HMMs 13730
Date Fri Aug 16 23:58:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7328.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7328hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qled_ f.23.8.1 (D:) Bacteria 60.3 3.5 0.00026 21.7 2.5 17 140-156 23-39 (43)
2 d1m56d_ f.23.8.1 (D:) Bacteria 60.0 3.7 0.00027 21.5 2.5 15 141-155 23-37 (42)
3 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 50.6 4.9 0.00036 26.7 2.8 36 70-105 160-195 (196)
4 d1io1a_ e.32.1.1 (A:) Phase 1 44.9 33 0.0024 24.1 7.0 42 72-113 17-71 (395)
5 d1tjla1 a.2.14.1 (A:7-110) Dna 18.2 73 0.0053 19.3 3.9 41 61-101 26-66 (104)
6 d1s0pa_ a.192.1.1 (A:) N-termi 12.4 1.2E+02 0.0089 20.1 4.1 29 84-112 9-37 (176)
7 d1lb3a_ a.25.1.1 (A:) (Apo)fer 10.2 1.8E+02 0.013 18.7 4.4 56 62-117 90-148 (179)
8 d2gtsa1 a.25.5.1 (A:4-80) Hypo 9.7 1.5E+02 0.011 16.2 4.2 28 82-109 45-72 (77)
9 d1pq1a_ f.1.4.1 (A:) Apoptosis 9.4 2.5E+02 0.018 18.6 5.9 15 134-148 131-145 (196)
10 d1xzpa1 a.24.25.1 (A:118-211,A 9.4 1.4E+02 0.01 19.0 3.5 62 83-144 31-92 (173)
No 1
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=60.33 E-value=3.5 Score=21.67 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=8.1
Q ss_pred chHHHHHHHHHHHHHHH
Q psy7328 140 CGYWVVIIVLFIANVLV 156 (159)
Q Consensus 140 ~~~~~iI~~L~v~iv~l 156 (159)
|..|.+|++++++|++.
T Consensus 23 ~~t~~~i~~i~~liflA 39 (43)
T d1qled_ 23 GATWVSILSIAVLVFLA 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33555655444444443
No 2
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=60.05 E-value=3.7 Score=21.46 Aligned_cols=15 Identities=13% Similarity=0.386 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHHHH
Q psy7328 141 GYWVVIIVLFIANVL 155 (159)
Q Consensus 141 ~~~~iI~~L~v~iv~ 155 (159)
..|.+|++++++|++
T Consensus 23 ~t~~~i~~i~~lifl 37 (42)
T d1m56d_ 23 VTWAAVVIVAALIFL 37 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555444444443
No 3
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=50.60 E-value=4.9 Score=26.67 Aligned_cols=36 Identities=19% Similarity=0.129 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7328 70 QQMMIAAQDQGLEALSKVISRQKNIALTISNEVDVQ 105 (159)
Q Consensus 70 q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~El~~Q 105 (159)
....+.+.++.+..|..+|..|++|+.+++.-|.+|
T Consensus 160 ~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ 195 (196)
T d1fioa_ 160 ALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQ 195 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcc
Confidence 445567788999999999999999999998766655
No 4
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=44.93 E-value=33 Score=24.11 Aligned_cols=42 Identities=14% Similarity=0.366 Sum_probs=31.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH-------------HHHHHHHhhhhHHHHH
Q psy7328 72 MMIAAQDQGLEALSKVISRQKNIALT-------------ISNEVDVQNDLVDDIT 113 (159)
Q Consensus 72 ~~~~eqD~~Ld~l~~~v~~lk~ia~~-------------i~~El~~Q~~~Ld~l~ 113 (159)
-+++--|-.|.+++..+.|+|+++.+ |..|++...+-||+|-
T Consensus 17 s~lqtae~al~~~~~iL~r~reLavqaan~t~~~~dr~ai~~E~~~l~~ei~~ia 71 (395)
T d1io1a_ 17 SIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVS 71 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666788999999999999999865 5556665555555554
No 5
>d1tjla1 a.2.14.1 (A:7-110) DnaK suppressor protein DksA, alpha-hairpin domain {Escherichia coli [TaxId: 562]}
Probab=18.19 E-value=73 Score=19.29 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy7328 61 ANIADVREQQQMMIAAQDQGLEALSKVISRQKNIALTISNE 101 (159)
Q Consensus 61 ~~~~~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia~~i~~E 101 (159)
|+..++.-+-..+.....+-+..+..++..+..-.....++
T Consensus 26 Mn~~QL~~Fr~~L~~~k~eL~~e~~~t~~~~~~~~~~~~D~ 66 (104)
T d1tjla1 26 MNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDP 66 (104)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCh
Confidence 78888776666666666777777777777665444443343
No 6
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase associated protein, CAP {Dictyostelium discoideum [TaxId: 44689]}
Probab=12.43 E-value=1.2e+02 Score=20.07 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q psy7328 84 LSKVISRQKNIALTISNEVDVQNDLVDDI 112 (159)
Q Consensus 84 l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l 112 (159)
+.+.|...-..+..||.+|.+|..++...
T Consensus 9 i~~~v~~~~~~s~~Igg~V~~~a~~v~~a 37 (176)
T d1s0pa_ 9 VDQHITPFVALSKKLAPEVGNQVEQLVKA 37 (176)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 67788888888888888888888776654
No 7
>d1lb3a_ a.25.1.1 (A:) (Apo)ferritin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.23 E-value=1.8e+02 Score=18.66 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHH-HHHHHHhhhhHHHHHHhHH
Q psy7328 62 NIADVREQQQMMIAAQDQGLEALSKVISRQKNIA--LTI-SNEVDVQNDLVDDITERMD 117 (159)
Q Consensus 62 ~~~~~~q~q~~~~~eqD~~Ld~l~~~v~~lk~ia--~~i-~~El~~Q~~~Ld~l~~~vd 117 (159)
+..+.++.--..-++--+.+..|.......+..+ .-+ +.=|++|.+-++.+.+-+.
T Consensus 90 ~~~~~~~~aL~~Ek~v~~~l~~l~~~A~~~~D~~t~~fL~~~fl~eQ~e~~~~l~~~l~ 148 (179)
T d1lb3a_ 90 KTQEAMEAALAMEKNLNQALLDLHALGSARADPHLCDFLESHYLDKEVKLIKKMGNHLT 148 (179)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554333333444566777777766665322 224 3456677666666665553
No 8
>d2gtsa1 a.25.5.1 (A:4-80) Hypothetical protein HP0062 {Helicobacter pylori [TaxId: 210]}
Probab=9.67 E-value=1.5e+02 Score=16.24 Aligned_cols=28 Identities=14% Similarity=0.162 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q psy7328 82 EALSKVISRQKNIALTISNEVDVQNDLV 109 (159)
Q Consensus 82 d~l~~~v~~lk~ia~~i~~El~~Q~~~L 109 (159)
|..+..+..||.-+....+-+.+|..-|
T Consensus 45 d~fsevldnlk~tfnefdea~qeqiawl 72 (77)
T d2gtsa1 45 DKFSEVLDNLKSTFNEFDEAAQEQIAWL 72 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666665444
No 9
>d1pq1a_ f.1.4.1 (A:) Apoptosis regulator Bcl-xL {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.42 E-value=2.5e+02 Score=18.56 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=7.2
Q ss_pred HhhcCCchHHHHHHH
Q psy7328 134 LTQDATCGYWVVIIV 148 (159)
Q Consensus 134 ~~~~~~~~~~~iI~~ 148 (159)
.+..-+|+..+.++.
T Consensus 131 F~dginWGRIVal~~ 145 (196)
T d1pq1a_ 131 FRDGVNWGRIVAFFS 145 (196)
T ss_dssp TTTCCCHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHH
Confidence 333336666555433
No 10
>d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain {Thermotoga maritima [TaxId: 2336]}
Probab=9.36 E-value=1.4e+02 Score=19.00 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhHHhhhHHHHHHHHHHHHHHhhcCCchHHH
Q psy7328 83 ALSKVISRQKNIALTISNEVDVQNDLVDDITERMDHTNVSIQRETNQVTSILTQDATCGYWV 144 (159)
Q Consensus 83 ~l~~~v~~lk~ia~~i~~El~~Q~~~Ld~l~~~vd~t~~~l~~~~~~l~~~~~~~~~~~~~~ 144 (159)
.++..+..+++-=..+-.+++..-+.-|+.....+....+++....++++++.....+..+.
T Consensus 31 ~ls~~i~~ir~~L~~l~a~iEa~iDf~ee~~~~~~~~~~~l~~i~~~l~~li~~~~~g~~l~ 92 (173)
T d1xzpa1 31 GLRDFVDSLRRELIEVLAEIRVELDYPDEIETNTGEVVTRLERIKEKLTEELKKADAGILLN 92 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!