RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7328
         (159 letters)



>d2v3za1 c.55.2.1 (A:1-176) Aminopeptidase P {Escherichia coli
          [TaxId: 562]}
          Length = 176

 Score = 24.4 bits (52), Expect = 6.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 5  ERRQRLLEQLQSSSVKI 21
           RRQ L+EQ+Q  S  +
Sbjct: 10 RRRQALVEQMQPGSAAL 26


>d3vuba_ b.34.6.1 (A:) CcdB {Escherichia coli [TaxId: 562]}
          Length = 101

 Score = 23.9 bits (52), Expect = 6.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 102 VDVQNDLVDDITERM 116
           VDVQ+D++D    RM
Sbjct: 18  VDVQSDIIDTPGRRM 32


>d1f5ta2 a.76.1.1 (A:1065-1121) Diphtheria toxin repressor (DtxR)
           {Corynebacterium diphtheriae [TaxId: 1717]}
          Length = 57

 Score = 22.7 bits (49), Expect = 9.4
 Identities = 6/41 (14%), Positives = 18/41 (43%)

Query: 78  DQGLEALSKVISRQKNIALTISNEVDVQNDLVDDITERMDH 118
             G    + V+ + +     +++ + +  + V D  +R +H
Sbjct: 2   PTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEADRWEH 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.128    0.346 

Gapped
Lambda     K      H
   0.267   0.0680    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 508,851
Number of extensions: 19424
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 3
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.8 bits)