Query psy7329
Match_columns 336
No_of_seqs 212 out of 1742
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 23:58:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7329.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7329hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 9.8E-43 2.1E-47 337.3 24.6 229 1-299 105-333 (365)
2 KOG0697|consensus 100.0 2.3E-42 4.9E-47 312.4 19.4 239 1-300 55-295 (379)
3 KOG0698|consensus 100.0 3.5E-41 7.7E-46 323.7 22.5 226 1-300 77-308 (330)
4 PTZ00224 protein phosphatase 2 100.0 1.4E-39 3E-44 316.5 22.1 223 1-299 50-274 (381)
5 PF00481 PP2C: Protein phospha 100.0 9.6E-41 2.1E-45 309.4 13.2 218 1-288 35-254 (254)
6 KOG0699|consensus 100.0 2.6E-38 5.6E-43 294.8 16.9 183 67-298 323-505 (542)
7 COG0631 PTC1 Serine/threonine 100.0 2.2E-37 4.7E-42 288.5 16.7 216 1-299 40-255 (262)
8 KOG0700|consensus 100.0 2.9E-37 6.3E-42 293.6 13.9 239 1-278 101-379 (390)
9 cd00143 PP2Cc Serine/threonine 100.0 1.1E-30 2.4E-35 239.1 23.0 222 1-295 32-254 (254)
10 smart00332 PP2Cc Serine/threon 100.0 7.2E-31 1.6E-35 241.2 21.7 219 1-293 36-255 (255)
11 KOG1323|consensus 100.0 2.1E-30 4.6E-35 239.8 18.7 240 39-299 218-490 (493)
12 PRK14559 putative protein seri 100.0 3.4E-30 7.4E-35 263.9 22.0 215 1-299 416-638 (645)
13 KOG1379|consensus 99.8 2E-19 4.3E-24 166.9 17.9 145 73-295 166-330 (330)
14 KOG0618|consensus 99.8 2.7E-18 5.8E-23 177.3 14.8 213 2-299 554-775 (1081)
15 smart00331 PP2C_SIG Sigma fact 99.6 2.8E-14 6E-19 126.3 17.0 158 1-274 32-192 (193)
16 PF13672 PP2C_2: Protein phosp 99.4 1.8E-13 4E-18 122.8 7.4 103 2-114 27-138 (212)
17 TIGR02865 spore_II_E stage II 99.4 1.9E-11 4.1E-16 129.5 17.5 174 2-295 583-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.3 1.6E-10 3.6E-15 101.8 16.8 69 220-296 118-193 (193)
19 COG2208 RsbU Serine phosphatas 97.5 0.0087 1.9E-07 58.5 18.8 70 220-296 290-366 (367)
20 KOG0699|consensus 96.6 0.0017 3.6E-08 62.4 3.6 131 174-316 367-506 (542)
21 KOG0698|consensus 95.9 0.0013 2.8E-08 63.6 -1.4 126 174-316 179-307 (330)
22 KOG0697|consensus 95.0 0.053 1.2E-06 50.6 6.0 79 174-254 162-246 (379)
23 PF00481 PP2C: Protein phospha 88.0 0.48 1E-05 43.6 3.3 78 174-254 137-217 (254)
24 COG3700 AphA Acid phosphatase 62.6 15 0.00032 32.6 4.8 49 229-277 71-130 (237)
25 PLN03145 Protein phosphatase 2 47.3 2.1 4.6E-05 42.0 -3.3 42 174-216 203-244 (365)
26 PF01436 NHL: NHL repeat; Int 30.5 1.1E+02 0.0024 17.9 3.7 21 81-101 8-28 (28)
27 PF09436 DUF2016: Domain of un 25.4 45 0.00097 24.9 1.5 18 229-246 27-44 (72)
28 PTZ00224 protein phosphatase 2 24.2 59 0.0013 32.1 2.6 42 174-216 142-183 (381)
29 TIGR03859 PQQ_PqqD coenzyme PQ 23.0 2.4E+02 0.0052 21.1 5.2 46 224-272 11-56 (81)
30 COG1539 FolB Dihydroneopterin 22.6 4E+02 0.0087 21.8 6.8 62 233-302 42-105 (121)
31 PF06972 DUF1296: Protein of u 21.9 1.3E+02 0.0028 21.7 3.1 26 243-271 19-44 (60)
32 PF05785 CNF1: Rho-activating 21.5 85 0.0018 29.7 2.9 26 70-96 128-153 (281)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=9.8e-43 Score=337.25 Aligned_cols=229 Identities=30% Similarity=0.448 Sum_probs=184.8
Q ss_pred CceeeecCCchHHHHHHHHHHHHHhcccCCCCCCCchhHHHHHHhhhhhhccHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q psy7329 1 MVSTVDFESGGLSREDIQKRMKEALDHKDVPGMDSGCTAVVVLFVDNEVSLSREDIQKRMKEALDHKDVPGMDSGCTAVV 80 (336)
Q Consensus 1 ~~~~~DghgG~~A~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~GtT~~~ 80 (336)
+|+|||||||..|++++.+.|.+.+..... . ...+...+.+++..++..+.+. ..... ...+|||+++
T Consensus 105 lf~V~DGhGG~~age~as~~l~~~i~~~~~--~----~~~~~~al~~af~~~d~~~~~~----~~~~~--~~~~GTTavv 172 (365)
T PLN03145 105 FYGVFDGHGGKHAADFACYHLPRFIVEDED--F----PREIEKVVSSAFLQTDTAFAEA----CSLDA--SLASGTTALA 172 (365)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHhhhc--c----chhHHHHHHHHHHHHhHHHHhh----hcccc--CCCCcCcEEE
Confidence 489999999999999999999998864211 1 1123445666666666655442 22222 2235999999
Q ss_pred EEEecCeEEEEEcCCceEEEEeCCccccCCCCCCCCCHHHHHHHHHhCCccccCCCcCCCcccccccccCCCchhhhhhh
Q psy7329 81 VLFVDNEVYIANAGDSRAVLCRDSKAQDLSEDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLAL 160 (336)
Q Consensus 81 ~li~~~~l~vAnvGDSR~~l~r~~~~~~lt~DH~~~~~~E~~Ri~~~gg~v~~~~r~~g~l~~sRalGd~~~~~~~~~~~ 160 (336)
+++.++++||||+||||+|+++++++++||+||++.++.|++||.+.||.+. .++++|.+++||+|||+.+|.
T Consensus 173 ~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg~v~-~g~v~g~l~vTRalGD~~~k~------ 245 (365)
T PLN03145 173 ALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGGYVY-DGYLNGQLNVARALGDWHMEG------ 245 (365)
T ss_pred EEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCCcee-cceECCccccccccccccccc------
Confidence 9999999999999999999999999999999999999999999999999886 578999999999999988732
Q ss_pred cCCCCcccccccccCCCCchHHhHhHHhhcCCccccCCccCCCccccccccceeeCCceeEeccCCCCCeEEEEEcCCcc
Q psy7329 161 NNSGTAHLSKRKLLDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSRTDEFIVSACDGIW 240 (336)
Q Consensus 161 ~~~~~~~~~k~~~~~~~p~~~~~~~ri~~a~g~v~~~~r~~~~~~~~~~~pdi~~~~~~~~~~l~~~~dd~lIlaSDGl~ 240 (336)
. ... .++.++ ++||+. .++ +.++ |+||||||||||
T Consensus 246 -----------~-k~~-------------~~~~vs-------------~ePdv~-----~~~-l~~~-D~fLILaSDGLw 280 (365)
T PLN03145 246 -----------M-KGS-------------DGGPLS-------------AEPELM-----TTQ-LTEE-DEFLIIGCDGIW 280 (365)
T ss_pred -----------c-ccc-------------cCCCcc-------------eEEEEE-----EEE-CCCC-CEEEEEeCCccc
Confidence 1 000 001124 889999 888 9887 789999999999
Q ss_pred cccChHHHHHHHHHHhhccchHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEEEEcCCCC
Q psy7329 241 NSLSSQEVVDFVRERIGKQEKLIDICEELFDKCLAPDSLGDGTGCDNMTCVLVKIEPGR 299 (336)
Q Consensus 241 d~ls~~ei~~iv~~~~~~~~~~~~~a~~L~~~a~~~~~~~~~g~~DNiTvivv~l~~~~ 299 (336)
|+|+++++++++...+....+++++|+.|++.|+. +++.||||||||+|+...
T Consensus 281 dvls~ee~v~~i~~~l~~~~~p~~aa~~Lv~~Al~------rgs~DNITvIVV~l~~~~ 333 (365)
T PLN03145 281 DVFRSQNAVDFARRRLQEHNDPVMCSKELVDEALK------RKSGDNLAVVVVCFQSQP 333 (365)
T ss_pred cCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh------CCCCCCEEEEEEEeecCC
Confidence 99999999999988777667899999999999997 456899999999999853
No 2
>KOG0697|consensus
Probab=100.00 E-value=2.3e-42 Score=312.41 Aligned_cols=239 Identities=33% Similarity=0.513 Sum_probs=190.3
Q ss_pred CceeeecCCchHHHHHHHHHHHHHhcccC-CCCC-CCchhHHHHHHhhhhhhccHHHHHHHHHHHHhcCCCCCCCCCCcE
Q psy7329 1 MVSTVDFESGGLSREDIQKRMKEALDHKD-VPGM-DSGCTAVVVLFVDNEVSLSREDIQKRMKEALDHKDVPGMDSGCTA 78 (336)
Q Consensus 1 ~~~~~DghgG~~A~~~~~~~l~~~l~~~~-~~~~-~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~GtT~ 78 (336)
+|+|||||.|.+.|+.+.+.|.+.+.... .... ..+.......-++.-| ..|.+.++....... ...++|||+
T Consensus 55 fFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~~~~~GIrtGF----L~iDE~mr~~~~~~~-~~drsGsTA 129 (379)
T KOG0697|consen 55 FFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVENVEKGIRTGF----LSIDEIMRTLSDISK-GSDRSGSTA 129 (379)
T ss_pred EEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHHHHHhhHhhcc----eeHHHHHhhhhhhhc-ccccCCceE
Confidence 69999999999999999999999875421 1111 1111122233333333 344444333333221 223369999
Q ss_pred EEEEEecCeEEEEEcCCceEEEEeCCccccCCCCCCCCCHHHHHHHHHhCCccccCCCcCCCcccccccccCCCchhhhh
Q psy7329 79 VVVLFVDNEVYIANAGDSRAVLCRDSKAQDLSEDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFL 158 (336)
Q Consensus 79 ~~~li~~~~l~vAnvGDSR~~l~r~~~~~~lt~DH~~~~~~E~~Ri~~~gg~v~~~~r~~g~l~~sRalGd~~~~~~~~~ 158 (336)
+++++...++|++|+||||++++|+|++++-|.||+|.+|.|++||+.+||.+. -+|++|.|++||+|||++||
T Consensus 130 Vcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRIqnAGGSVM-IqRvNGsLAVSRAlGDydyK----- 203 (379)
T KOG0697|consen 130 VCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERIQNAGGSVM-IQRVNGSLAVSRALGDYDYK----- 203 (379)
T ss_pred EEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHHHHHhcCCCeEE-EEEecceeeeehhccCcccc-----
Confidence 999999999999999999999999999999999999999999999999999998 58999999999999999993
Q ss_pred hhcCCCCcccccccccCCCCchHHhHhHHhhcCCccccCCccCCCccccccccceeeCCceeEeccCCCCCeEEEEEcCC
Q psy7329 159 ALNNSGTAHLSKRKLLDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSRTDEFIVSACDG 238 (336)
Q Consensus 159 ~~~~~~~~~~~k~~~~~~~p~~~~~~~ri~~a~g~v~~~~r~~~~~~~~~~~pdi~~~~~~~~~~l~~~~dd~lIlaSDG 238 (336)
.. .-++..+++ + + ++||++ ... -... |+||||||||
T Consensus 204 ------------~v--~~kgp~eQl---V-------S-------------PEPev~-----~~~-R~ee-deFivlACDG 239 (379)
T KOG0697|consen 204 ------------NV--PGKGPTEQL---V-------S-------------PEPEVY-----IIE-RSEE-DEFIVLACDG 239 (379)
T ss_pred ------------cC--CCCCchhcc---c-------C-------------CCCceE-----Eee-cccc-CcEEEEEccc
Confidence 22 334555555 4 7 999998 666 5555 7999999999
Q ss_pred cccccChHHHHHHHHHHhhccchHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEEEEcCCCCC
Q psy7329 239 IWNSLSSQEVVDFVRERIGKQEKLIDICEELFDKCLAPDSLGDGTGCDNMTCVLVKIEPGRL 300 (336)
Q Consensus 239 l~d~ls~~ei~~iv~~~~~~~~~~~~~a~~L~~~a~~~~~~~~~g~~DNiTvivv~l~~~~~ 300 (336)
+||+|+++|++++|...+.-..++..+|+.+++.|+.+ |++||+|+|+|.|...+.
T Consensus 240 IwDVMtneelcefv~sRl~Vt~dL~~vcn~VvDtCLhK------GSRDNMsivlvcfp~APk 295 (379)
T KOG0697|consen 240 IWDVMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCLHK------GSRDNMSIVLVCFPGAPK 295 (379)
T ss_pred hhhhcccHHHHHHHHhhheecccHHHHHHHHHHHHHhc------cCccCceEEEEecCCCCC
Confidence 99999999999999999998899999999999999984 569999999999987543
No 3
>KOG0698|consensus
Probab=100.00 E-value=3.5e-41 Score=323.68 Aligned_cols=226 Identities=33% Similarity=0.450 Sum_probs=181.8
Q ss_pred CceeeecCCchHHHHHHHHHHHHHhcccCCCCCCCchhHHHHHHhhhhhh-ccHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q psy7329 1 MVSTVDFESGGLSREDIQKRMKEALDHKDVPGMDSGCTAVVVLFVDNEVS-LSREDIQKRMKEALDHKDVPGMDSGCTAV 79 (336)
Q Consensus 1 ~~~~~DghgG~~A~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~GtT~~ 79 (336)
+|+|||||||..||+++.+.|+..+.......... ..+...+.++|. ..+..+.+. ......+|||++
T Consensus 77 ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~---~~~~~a~~~~F~~~~D~~~~~~--------~~~~~~~gstav 145 (330)
T KOG0698|consen 77 FFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDR---QDVKDALRRAFLTKTDSEFLEK--------REDNRSGGSTAV 145 (330)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccch---HHHHHHHHHHHHHHHHHHHHhh--------ccCCCCCcceee
Confidence 58999999999999999999999886533322211 223444555554 233333322 112345588988
Q ss_pred EEEEecC-eEEEEEcCCceEEEEeCC-ccccCCCCCCCCCHHHHHHHHHhCCccccC---CCcCCCcccccccccCCCch
Q psy7329 80 VVLFVDN-EVYIANAGDSRAVLCRDS-KAQDLSEDHKPEDEAEKSRIVKAGGEVTPC---GRVNGGLNLSRALGKSRFSP 154 (336)
Q Consensus 80 ~~li~~~-~l~vAnvGDSR~~l~r~~-~~~~lt~DH~~~~~~E~~Ri~~~gg~v~~~---~r~~g~l~~sRalGd~~~~~ 154 (336)
++++.++ ++||||+||||+++++.+ ++++||.||+|..+.|+.||..+||.+... .|++|.|++||+|||..+|.
T Consensus 146 ~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~ 225 (330)
T KOG0698|consen 146 VALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGGRVSNWGGVWRVNGVLAVSRAFGDVELKS 225 (330)
T ss_pred eeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCCEEEEcCCcceEeceEEEeeecCCHHhcC
Confidence 8888854 999999999999999866 799999999999999999999999999854 39999999999999999831
Q ss_pred hhhhhhcCCCCcccccccccCCCCchHHhHhHHhhcCCccccCCccCCCccccccccceeeCCceeEeccCCCCCeEEEE
Q psy7329 155 AYFLALNNSGTAHLSKRKLLDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSRTDEFIVS 234 (336)
Q Consensus 155 ~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~ri~~a~g~v~~~~r~~~~~~~~~~~pdi~~~~~~~~~~l~~~~dd~lIl 234 (336)
. .|+ ++||+. ... +... ++||||
T Consensus 226 -----------------~--------------------~v~-------------a~Pei~-----~~~-~~~~-deFLiL 248 (330)
T KOG0698|consen 226 -----------------Q--------------------GVI-------------AEPEIQ-----QVK-INSD-DEFLIL 248 (330)
T ss_pred -----------------C--------------------cEe-------------cCCceE-----EEE-cCCC-CcEEEE
Confidence 1 125 999999 777 7776 899999
Q ss_pred EcCCcccccChHHHHHHHHHHhhccchHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEEEEcCCCCC
Q psy7329 235 ACDGIWNSLSSQEVVDFVRERIGKQEKLIDICEELFDKCLAPDSLGDGTGCDNMTCVLVKIEPGRL 300 (336)
Q Consensus 235 aSDGl~d~ls~~ei~~iv~~~~~~~~~~~~~a~~L~~~a~~~~~~~~~g~~DNiTvivv~l~~~~~ 300 (336)
|||||||+|+++|++++|+..+.....+..++..|...|+. +++.||||||||+|.+...
T Consensus 249 asDGiwDv~s~qeav~~V~~~~~~~~~~~~a~~~l~~~a~~------~~s~DnitvvvV~l~~~~~ 308 (330)
T KOG0698|consen 249 ASDGIWDVVSNQEAVDLVRDELASISSPLAAAKLLATEALS------RGSKDNITVVVVRLKSSPK 308 (330)
T ss_pred eCCchhcccChHHHHHHHHHHhhccccHHHHHHHHHHHHhh------cCCCCCeEEEEEEecCccc
Confidence 99999999999999999999765557888999999999987 5569999999999998653
No 4
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=1.4e-39 Score=316.47 Aligned_cols=223 Identities=28% Similarity=0.489 Sum_probs=176.7
Q ss_pred CceeeecCCchHHHHHHHHHHHHHhcccCCCCCCCchhHHHHHHhhhhhhccHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q psy7329 1 MVSTVDFESGGLSREDIQKRMKEALDHKDVPGMDSGCTAVVVLFVDNEVSLSREDIQKRMKEALDHKDVPGMDSGCTAVV 80 (336)
Q Consensus 1 ~~~~~DghgG~~A~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~GtT~~~ 80 (336)
+|+|||||||..||+++.+.|.+.+...... . ....+..++...++.+.+. ...+|||+++
T Consensus 50 lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~~--~------~~~~l~~a~~~~d~~i~~~-----------~~~~GsTatv 110 (381)
T PTZ00224 50 FFGVFDGHVNDECSQYLARAWPQALEKEPEP--M------TDERMEELCLEIDEEWMDS-----------GREGGSTGTF 110 (381)
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHhcccc--c------cHHHHHHHHHHHHHHHHhc-----------ccCCCCeEEE
Confidence 5899999999999999999999887532111 0 0123455555555444321 1235999998
Q ss_pred EEEe-cCeEEEEEcCCceEEEEeCCccccCCCCCCCCCHHHHHHHHHhCCccccCCCcCCCcccccccccCCCchhhhhh
Q psy7329 81 VLFV-DNEVYIANAGDSRAVLCRDSKAQDLSEDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLA 159 (336)
Q Consensus 81 ~li~-~~~l~vAnvGDSR~~l~r~~~~~~lt~DH~~~~~~E~~Ri~~~gg~v~~~~r~~g~l~~sRalGd~~~~~~~~~~ 159 (336)
+++. +.++|||||||||+|++|+|++++||+||++.++.|++||.+.||.+. .+|++|.+.+||+|||..+|.
T Consensus 111 ~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~-~~Rv~G~l~vTRalGd~~~K~----- 184 (381)
T PTZ00224 111 CVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRVV-SNRVDGDLAVSRAFGDRSFKV----- 184 (381)
T ss_pred EEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEec-cccccCceeeecccCCccccc-----
Confidence 8886 579999999999999999999999999999999999999999999887 469999999999999998843
Q ss_pred hcCCCCcccccccccCCCCchHHhHhHHhhcCCccccCCccCCCccccccccceeeCCceeEeccCCCCCeEEEEEcCCc
Q psy7329 160 LNNSGTAHLSKRKLLDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSRTDEFIVSACDGI 239 (336)
Q Consensus 160 ~~~~~~~~~~k~~~~~~~p~~~~~~~ri~~a~g~v~~~~r~~~~~~~~~~~pdi~~~~~~~~~~l~~~~dd~lIlaSDGl 239 (336)
. ....+.... | + +.||+. .+. +.++ ||||||||||
T Consensus 185 ------------~-~~~~~~~~~----v-------~-------------~~Pdi~-----~~~-l~~~--D~llLaSDGL 219 (381)
T PTZ00224 185 ------------K-GTGDYLEQK----V-------I-------------AVPDVT-----HLT-CQSN--DFIILACDGV 219 (381)
T ss_pred ------------c-cccccccCc----c-------e-------------eeeEEE-----EEE-CCCC--CEEEEECCCc
Confidence 2 000000000 1 4 889999 888 8876 8999999999
Q ss_pred cc-ccChHHHHHHHHHHhhccchHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEEEEcCCCC
Q psy7329 240 WN-SLSSQEVVDFVRERIGKQEKLIDICEELFDKCLAPDSLGDGTGCDNMTCVLVKIEPGR 299 (336)
Q Consensus 240 ~d-~ls~~ei~~iv~~~~~~~~~~~~~a~~L~~~a~~~~~~~~~g~~DNiTvivv~l~~~~ 299 (336)
|| +++++|+.+++...+....+++.+|+.|++.|+. +|+.||||||||+|....
T Consensus 220 ~d~~ls~eEi~~iv~~~l~~~~~~~~aA~~Lv~~A~~------rGs~DNITvIvV~~~~~~ 274 (381)
T PTZ00224 220 FEGNFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAIR------RGSKDNISCLIVQLKDGA 274 (381)
T ss_pred CcCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh------cCCCCCEEEEEEEeeCCC
Confidence 99 8999999999987665556889999999999997 456999999999998754
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=9.6e-41 Score=309.37 Aligned_cols=218 Identities=34% Similarity=0.487 Sum_probs=164.6
Q ss_pred CceeeecCCchHHHHHHHHHHHHHhcccCCCCCCCchhHHHHHHhhhhhhc-cHHHHHHHHHHHHhcCCCCCCCCCCcEE
Q psy7329 1 MVSTVDFESGGLSREDIQKRMKEALDHKDVPGMDSGCTAVVVLFVDNEVSL-SREDIQKRMKEALDHKDVPGMDSGCTAV 79 (336)
Q Consensus 1 ~~~~~DghgG~~A~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~GtT~~ 79 (336)
+|+|||||||..+++++...|++.+......... ..+...+..++.. .++.+... ... . ....+|||++
T Consensus 35 l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~----~~~~~al~~a~~~~~~~~~~~~----~~~-~-~~~~~GsTa~ 104 (254)
T PF00481_consen 35 LFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDG----NDIEEALRQAFLAFTDESLYSD----SEN-N-ESSKSGSTAT 104 (254)
T ss_dssp EEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHHHHH----HHH-H-THTTSEEEEE
T ss_pred EEEEecCCCChhhHHHHHHHHHHHHHhhcccccc----cchhhcccceeeeccccccccc----ccc-c-cccccccccc
Confidence 5899999999999999999999877542111100 0233344444444 33333321 111 1 3345599999
Q ss_pred EEEEecCeEEEEEcCCceEEEEeCCccc-cCCCCCCCCCHHHHHHHHHhCCccccCCCcCCCcccccccccCCCchhhhh
Q psy7329 80 VVLFVDNEVYIANAGDSRAVLCRDSKAQ-DLSEDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFL 158 (336)
Q Consensus 80 ~~li~~~~l~vAnvGDSR~~l~r~~~~~-~lt~DH~~~~~~E~~Ri~~~gg~v~~~~r~~g~l~~sRalGd~~~~~~~~~ 158 (336)
++++.++++|+||+||||+|+++++... +||+||++.++.|++||++.||.+...+|++|.|++||+|||..+|++.
T Consensus 105 v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~~~rv~g~l~~sRalGd~~~k~~~-- 182 (254)
T PF00481_consen 105 VALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSENGRVNGVLAVSRALGDFDLKPPG-- 182 (254)
T ss_dssp EEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEETEEETTTBSSSB-EE-GGGTTCT--
T ss_pred ccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeeccccccccchhhhhccccccccccccccccc--
Confidence 9999999999999999999999999888 9999999999999999999999999888999999999999999995410
Q ss_pred hhcCCCCcccccccccCCCCchHHhHhHHhhcCCccccCCccCCCccccccccceeeCCceeEeccCCCCCeEEEEEcCC
Q psy7329 159 ALNNSGTAHLSKRKLLDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSRTDEFIVSACDG 238 (336)
Q Consensus 159 ~~~~~~~~~~~k~~~~~~~p~~~~~~~ri~~a~g~v~~~~r~~~~~~~~~~~pdi~~~~~~~~~~l~~~~dd~lIlaSDG 238 (336)
..+++ ++|++. .++ +.++ ++||||||||
T Consensus 183 --------------------------------~~~v~-------------~~P~i~-----~~~-l~~~-d~flvlaSDG 210 (254)
T PF00481_consen 183 --------------------------------KPGVI-------------AEPDIS-----EVD-LTPD-DEFLVLASDG 210 (254)
T ss_dssp --------------------------------SSSSB----------------EEE-----EEE-EBTT-EEEEEEE-HH
T ss_pred --------------------------------cceee-------------eecccc-----ccc-cccc-ceEEEEEccc
Confidence 01225 999999 999 9998 7899999999
Q ss_pred cccccChHHHHHHHHHHhhccchHHHHHHHHHHHHhcCCCCCCCCCCCCe
Q psy7329 239 IWNSLSSQEVVDFVRERIGKQEKLIDICEELFDKCLAPDSLGDGTGCDNM 288 (336)
Q Consensus 239 l~d~ls~~ei~~iv~~~~~~~~~~~~~a~~L~~~a~~~~~~~~~g~~DNi 288 (336)
|||+|+++|+++++...+..+..++.+|+.|++.|+. +|+.|||
T Consensus 211 lwd~l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~------~gs~DNi 254 (254)
T PF00481_consen 211 LWDVLSNEEIVDIVRESLNSGRSPQEAAEKLVDEAIA------RGSKDNI 254 (254)
T ss_dssp HHTTSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH------TTHHSHE
T ss_pred ccccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh------cCCCCCC
Confidence 9999999999999999866555699999999999998 4568997
No 6
>KOG0699|consensus
Probab=100.00 E-value=2.6e-38 Score=294.76 Aligned_cols=183 Identities=57% Similarity=0.904 Sum_probs=173.5
Q ss_pred CCCCCCCCCCcEEEEEEecCeEEEEEcCCceEEEEeCCccccCCCCCCCCCHHHHHHHHHhCCccccCCCcCCCcccccc
Q psy7329 67 KDVPGMDSGCTAVVVLFVDNEVYIANAGDSRAVLCRDSKAQDLSEDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRA 146 (336)
Q Consensus 67 ~~~~~~~~GtT~~~~li~~~~l~vAnvGDSR~~l~r~~~~~~lt~DH~~~~~~E~~Ri~~~gg~v~~~~r~~g~l~~sRa 146 (336)
.+..+..+|||++|||+.+++|||||.||||+++.|+|+.+-+|.||+|..+.|..||..+||.|+-++||+|+|++||+
T Consensus 323 ~EePG~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDGRVNGGLNLSRA 402 (542)
T KOG0699|consen 323 AEEPGEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDGRVNGGLNLSRA 402 (542)
T ss_pred CcCCCCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecceecCccchhhh
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchhhhhhhcCCCCcccccccccCCCCchHHhHhHHhhcCCccccCCccCCCccccccccceeeCCceeEeccCC
Q psy7329 147 LGKSRFSPAYFLALNNSGTAHLSKRKLLDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNS 226 (336)
Q Consensus 147 lGd~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~ri~~a~g~v~~~~r~~~~~~~~~~~pdi~~~~~~~~~~l~~ 226 (336)
|||+.| |++ ..+ |..+++ | + +.|||. ... |.|
T Consensus 403 ~GDHaY-----------------K~N-~~L-p~eEQM---I-------s-------------ALPDiK-----~l~-lTp 434 (542)
T KOG0699|consen 403 FGDHAY-----------------KKN-QEL-PLEEQM---I-------S-------------ALPDIK-----ILA-LTP 434 (542)
T ss_pred hhhhhh-----------------hcc-cCC-ChHHHH---h-------h-------------hcccce-----eEe-ecC
Confidence 999999 777 666 777888 7 7 899999 888 999
Q ss_pred CCCeEEEEEcCCcccccChHHHHHHHHHHhhccchHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEEEEcCCC
Q psy7329 227 RTDEFIVSACDGIWNSLSSQEVVDFVRERIGKQEKLIDICEELFDKCLAPDSLGDGTGCDNMTCVLVKIEPG 298 (336)
Q Consensus 227 ~~dd~lIlaSDGl~d~ls~~ei~~iv~~~~~~~~~~~~~a~~L~~~a~~~~~~~~~g~~DNiTvivv~l~~~ 298 (336)
. ++|+|+||||+|++|+.+|++++|+..+..+..+.++|+.|++.|+....++++.++||+|||++.|+..
T Consensus 435 e-dEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLAp~T~GDGTGCDNMT~ii~~Fkrk 505 (542)
T KOG0699|consen 435 E-DEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLAPSTDGDGTGCDNMTVIITTFKRK 505 (542)
T ss_pred c-ccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCCCCCCCCcCCCcceEEEEEeccc
Confidence 8 9999999999999999999999999999999999999999999999999999999999999999999854
No 7
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-37 Score=288.53 Aligned_cols=216 Identities=28% Similarity=0.396 Sum_probs=175.4
Q ss_pred CceeeecCCchHHHHHHHHHHHHHhcccCCCCCCCchhHHHHHHhhhhhhccHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q psy7329 1 MVSTVDFESGGLSREDIQKRMKEALDHKDVPGMDSGCTAVVVLFVDNEVSLSREDIQKRMKEALDHKDVPGMDSGCTAVV 80 (336)
Q Consensus 1 ~~~~~DghgG~~A~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~GtT~~~ 80 (336)
|++|||||||..+++.+.+.+.+.|...................+.+.+...++.+... ...+.+..+| |||+++
T Consensus 40 l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~i~~~---~~~~~~~~~m--gtTl~~ 114 (262)
T COG0631 40 LFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEELLKEAILKANEAIAEE---GQLNEDVRGM--GTTLVL 114 (262)
T ss_pred EEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHh---hhcccccCCC--ceeEEE
Confidence 68999999999999988888877775433322222111115567788888888888776 3344556677 999999
Q ss_pred EEEecCeEEEEEcCCceEEEEeCCccccCCCCCCCCCHHHHHHHHHhCCccccCCCcCCCcccccccccCCCchhhhhhh
Q psy7329 81 VLFVDNEVYIANAGDSRAVLCRDSKAQDLSEDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLAL 160 (336)
Q Consensus 81 ~li~~~~l~vAnvGDSR~~l~r~~~~~~lt~DH~~~~~~E~~Ri~~~gg~v~~~~r~~g~l~~sRalGd~~~~~~~~~~~ 160 (336)
+++.++++|+|||||||+|++|++++++||.||++.+..|++|++..++.... .+. ..+||+||+..+
T Consensus 115 ~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~~~~~~~~~~-~~~---~~ltralG~~~~-------- 182 (262)
T COG0631 115 LLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGIITPEEARSH-PRR---NALTRALGDFDL-------- 182 (262)
T ss_pred EEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcCCCHHHHHhC-ccc---hhhhhhcCCCcc--------
Confidence 99999999999999999999999999999999999999888876666443332 222 389999999876
Q ss_pred cCCCCcccccccccCCCCchHHhHhHHhhcCCccccCCccCCCccccccccceeeCCceeEeccCCCCCeEEEEEcCCcc
Q psy7329 161 NNSGTAHLSKRKLLDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSRTDEFIVSACDGIW 240 (336)
Q Consensus 161 ~~~~~~~~~k~~~~~~~p~~~~~~~ri~~a~g~v~~~~r~~~~~~~~~~~pdi~~~~~~~~~~l~~~~dd~lIlaSDGl~ 240 (336)
..|++. ... +.++ +||||||||||
T Consensus 183 ------------------------------------------------~~p~~~-----~~~-~~~~--d~llL~SDGl~ 206 (262)
T COG0631 183 ------------------------------------------------LEPDIT-----ELE-LEPG--DFLLLCSDGLW 206 (262)
T ss_pred ------------------------------------------------cceeEE-----EEE-cCCC--CEEEEECCCCc
Confidence 668888 888 8887 99999999999
Q ss_pred cccChHHHHHHHHHHhhccchHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEEEEcCCCC
Q psy7329 241 NSLSSQEVVDFVRERIGKQEKLIDICEELFDKCLAPDSLGDGTGCDNMTCVLVKIEPGR 299 (336)
Q Consensus 241 d~ls~~ei~~iv~~~~~~~~~~~~~a~~L~~~a~~~~~~~~~g~~DNiTvivv~l~~~~ 299 (336)
|.++++++.+++... ..++++++.|++.|+. +++.||+|+++|.+....
T Consensus 207 d~v~~~~i~~il~~~----~~~~~~~~~li~~a~~------~g~~DNiT~ilv~~~~~~ 255 (262)
T COG0631 207 DVVSDDEIVDILKNS----ETPQEAADKLIELALE------GGGPDNITVVLVRLNGEG 255 (262)
T ss_pred cCcCHHHHHHHHhcC----CCHHHHHHHHHHHHHh------cCCCCceEEEEEEeeccc
Confidence 999999999999973 7899999999999997 567999999999998754
No 8
>KOG0700|consensus
Probab=100.00 E-value=2.9e-37 Score=293.56 Aligned_cols=239 Identities=24% Similarity=0.254 Sum_probs=181.2
Q ss_pred CceeeecCCchHHHHHHHHHHHHHhcccCC----------CCC----------------CCc-h-hHHHHHHhhhhhhcc
Q psy7329 1 MVSTVDFESGGLSREDIQKRMKEALDHKDV----------PGM----------------DSG-C-TAVVVLFVDNEVSLS 52 (336)
Q Consensus 1 ~~~~~DghgG~~A~~~~~~~l~~~l~~~~~----------~~~----------------~~~-~-~~~~~~~l~~~~~~~ 52 (336)
||||||||||..|++++.+.|-..+..+.. +.. .+. . ...+...|.++|...
T Consensus 101 fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~al~~Af~~t 180 (390)
T KOG0700|consen 101 FVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQRHGDVLEALSKAFEAT 180 (390)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccCccchhHHHHHHHHHHHH
Confidence 689999999999999999999876541110 111 000 1 345667788888888
Q ss_pred HHHHHHHHHHH-HhcCCCCCCCCCCcEEEEEEecCeEEEEEcCCceEEEEe---CC---ccccCCCCCCCCCHHHHHHHH
Q psy7329 53 REDIQKRMKEA-LDHKDVPGMDSGCTAVVVLFVDNEVYIANAGDSRAVLCR---DS---KAQDLSEDHKPEDEAEKSRIV 125 (336)
Q Consensus 53 ~~~i~~~~~~~-~~~~~~~~~~~GtT~~~~li~~~~l~vAnvGDSR~~l~r---~~---~~~~lt~DH~~~~~~E~~Ri~ 125 (336)
++++....... ...+.. ..+|||++++++.+..|||||+|||||+|++ ++ ..+|||.||+..+++|++||+
T Consensus 181 ee~fl~~v~~~~~~~p~l--A~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn~~ne~Ev~Rir 258 (390)
T KOG0700|consen 181 EEDFLEMVDKQLQENPEL--ALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHNASNEDEVRRIR 258 (390)
T ss_pred HHHHHHHHHHhhccchhh--hhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhccccHHHHHHHH
Confidence 88876554332 223334 3359999999999999999999999999975 33 578999999999999999999
Q ss_pred HhCC-----ccccCCCcCCCcccccccccCCCchhhhhhhcCCCCcccccccccCCCCchHHhHhHHhhcCCccccCCcc
Q psy7329 126 KAGG-----EVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSGTAHLSKRKLLDHKPEDEAEKSRIVKAGGEVTPCGRV 200 (336)
Q Consensus 126 ~~gg-----~v~~~~r~~g~l~~sRalGd~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~ri~~a~g~v~~~~r~ 200 (336)
..|. .+...+|++|.|.+||||||.+||.|.++... ..+. ...+.
T Consensus 259 ~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~-----------------l~~~-------------fr~~~ 308 (390)
T KOG0700|consen 259 SEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEP-----------------LLEK-------------FRIPY 308 (390)
T ss_pred HhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccch-----------------hHhh-------------cCCCC
Confidence 9985 23334699999999999999999776554211 1100 01123
Q ss_pred CCCccccccccceeeCCceeEeccCCCCCeEEEEEcCCcccccChHHHHHHHHHHhhccchHHHHHHHHHHHHhcCCC
Q psy7329 201 NGGLNLSRALGKSRFSPAYFLALNNSRTDEFIVSACDGIWNSLSSQEVVDFVRERIGKQEKLIDICEELFDKCLAPDS 278 (336)
Q Consensus 201 ~~~~~~~~~~pdi~~~~~~~~~~l~~~~dd~lIlaSDGl~d~ls~~ei~~iv~~~~~~~~~~~~~a~~L~~~a~~~~~ 278 (336)
.++.+|.+++|+++ ..+ |.+. |.|||||||||||+|+++|++.+|...+.....-+.+|+.|++.|+.+.+
T Consensus 309 ~~t~PyltaeP~i~-----~Hr-L~p~-DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~aa 379 (390)
T KOG0700|consen 309 IGTPPYLTAEPSIT-----HHK-LTPN-DKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRAA 379 (390)
T ss_pred CCCCCceeccceEE-----EEE-cCCC-CeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhhh
Confidence 34466667999999 989 9999 99999999999999999999999999766433446789999999987654
No 9
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.98 E-value=1.1e-30 Score=239.08 Aligned_cols=222 Identities=36% Similarity=0.542 Sum_probs=170.6
Q ss_pred CceeeecCCchHHHHHHHHHHHHHhcccCCCCCCCchhHHHHHHhhhhhhccHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q psy7329 1 MVSTVDFESGGLSREDIQKRMKEALDHKDVPGMDSGCTAVVVLFVDNEVSLSREDIQKRMKEALDHKDVPGMDSGCTAVV 80 (336)
Q Consensus 1 ~~~~~DghgG~~A~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~GtT~~~ 80 (336)
+|+|+|||||...++.+.+.+.+.+......... .....+...+..++..+++.+..... ...... .+|||+++
T Consensus 32 ~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~l~~~~~---~~~~~~--~~gtT~~~ 105 (254)
T cd00143 32 LFGVFDGHGGHAAGEFASKLLVEELLEELEETLT-LSEEDIEEALRKAFLRADEEILEEAQ---DEPDDA--RSGTTAVV 105 (254)
T ss_pred EEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHHHHhhh---hccCCC--CCCCcEEE
Confidence 5799999999888888888877776542221111 11233444566666666666555421 112223 34999999
Q ss_pred EEEecCeEEEEEcCCceEEEEeCCccccCCCCCCCCCHHHHHHHHHhCCccccCCCcCCCcccccccccCCCchhhhhhh
Q psy7329 81 VLFVDNEVYIANAGDSRAVLCRDSKAQDLSEDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLAL 160 (336)
Q Consensus 81 ~li~~~~l~vAnvGDSR~~l~r~~~~~~lt~DH~~~~~~E~~Ri~~~gg~v~~~~r~~g~l~~sRalGd~~~~~~~~~~~ 160 (336)
+++.+++++++|+||||+|++++++++++|.||++.++.|+.|+...+|.+. ..+..+...+||+||+..+++
T Consensus 106 ~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~t~~lG~~~~~~------ 178 (254)
T cd00143 106 ALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVS-NGRVPGVLAVTRALGDFDLKP------ 178 (254)
T ss_pred EEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEE-eCEEcCceeeccccCCccccC------
Confidence 9999999999999999999999999999999999999999999999977654 345566789999999987732
Q ss_pred cCCCCcccccccccCCCCchHHhHhHHhhcCCccccCCccCCCccccccccceeeCCceeEecc-CCCCCeEEEEEcCCc
Q psy7329 161 NNSGTAHLSKRKLLDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALN-NSRTDEFIVSACDGI 239 (336)
Q Consensus 161 ~~~~~~~~~k~~~~~~~p~~~~~~~ri~~a~g~v~~~~r~~~~~~~~~~~pdi~~~~~~~~~~l-~~~~dd~lIlaSDGl 239 (336)
. + . ..|++. .+. + +++ ++||||||||
T Consensus 179 -----------~--------------~-------~-------------~~~~~~-----~~~-l~~~~--d~ill~SDG~ 205 (254)
T cd00143 179 -----------G--------------V-------S-------------AEPDVT-----VVK-LTEDD--DFLILASDGL 205 (254)
T ss_pred -----------C--------------E-------E-------------cCCeEE-----EEE-eCCCC--cEEEEECCCC
Confidence 0 1 2 778888 777 7 665 9999999999
Q ss_pred ccccChHHHHHHHHHHhhccchHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEEEEc
Q psy7329 240 WNSLSSQEVVDFVRERIGKQEKLIDICEELFDKCLAPDSLGDGTGCDNMTCVLVKI 295 (336)
Q Consensus 240 ~d~ls~~ei~~iv~~~~~~~~~~~~~a~~L~~~a~~~~~~~~~g~~DNiTvivv~l 295 (336)
||+++++++.+++...... .+++++|+.|++.|..+ ++.||+|+||++|
T Consensus 206 ~~~l~~~~i~~~~~~~~~~-~~~~~~a~~l~~~a~~~------~~~Dn~t~i~~~~ 254 (254)
T cd00143 206 WDVLSNQEAVDIVRSELAK-EDLQEAAQELVDLALRR------GSHDNITVVVVRL 254 (254)
T ss_pred eeccChHHHHHHHHHHhcc-cCHHHHHHHHHHHHHhC------CCCCCEEEEEEeC
Confidence 9999999999999986111 17999999999999974 4589999999975
No 10
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.98 E-value=7.2e-31 Score=241.16 Aligned_cols=219 Identities=38% Similarity=0.552 Sum_probs=172.2
Q ss_pred CceeeecCCchHHHHHHHHHHHHHhcccCCCCCCCchhHHHHHHhhhhhhccHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q psy7329 1 MVSTVDFESGGLSREDIQKRMKEALDHKDVPGMDSGCTAVVVLFVDNEVSLSREDIQKRMKEALDHKDVPGMDSGCTAVV 80 (336)
Q Consensus 1 ~~~~~DghgG~~A~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~GtT~~~ 80 (336)
+++|+|||||..+++.+.+.+.+.+......... ....+...+..++..+++.+... ......... +|||+++
T Consensus 36 ~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~--~gtT~~~ 108 (255)
T smart00332 36 FFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKD--ELEDVEEALRKAFLKTDEEILEE---LESLEEDAG--SGSTAVV 108 (255)
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhccc--chhHHHHHHHHHHHHHHHHHHHh---hhhccCCCC--CCccEEE
Confidence 4799999999999999999999888653221111 11234445666666666665544 211222233 4999999
Q ss_pred EEEecCeEEEEEcCCceEEEEeCCccccCCCCCCCCCHHHHHHHHHhCCccccCCCcCCCcccccccccCCCchhhhhhh
Q psy7329 81 VLFVDNEVYIANAGDSRAVLCRDSKAQDLSEDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLAL 160 (336)
Q Consensus 81 ~li~~~~l~vAnvGDSR~~l~r~~~~~~lt~DH~~~~~~E~~Ri~~~gg~v~~~~r~~g~l~~sRalGd~~~~~~~~~~~ 160 (336)
+++.++.+|++|+||||+|++|++++.++|+||++.++.|..||...++.+. .++..+.+.+||++|+..+||
T Consensus 109 ~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~-~~~~~~~~~lt~~~g~~~~~~------ 181 (255)
T smart00332 109 ALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVI-NGRVNGVLALSRAIGDFFLKP------ 181 (255)
T ss_pred EEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEE-CCeECCeEecccccCCHhhcC------
Confidence 9999999999999999999999999999999999999999999999988766 357777899999999987733
Q ss_pred cCCCCcccccccccCCCCchHHhHhHHhhcCCccccCCccCCCccccccccceeeCCceeEecc-CCCCCeEEEEEcCCc
Q psy7329 161 NNSGTAHLSKRKLLDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALN-NSRTDEFIVSACDGI 239 (336)
Q Consensus 161 ~~~~~~~~~k~~~~~~~p~~~~~~~ri~~a~g~v~~~~r~~~~~~~~~~~pdi~~~~~~~~~~l-~~~~dd~lIlaSDGl 239 (336)
. + . ..|++. ..+ + .+ +++||||||||
T Consensus 182 -----------~--------------i-------~-------------~~p~~~-----~~~-~~~~--~d~ill~SDGv 208 (255)
T smart00332 182 -----------Y--------------V-------S-------------AEPDVT-----VVE-LTEK--DDFLILASDGL 208 (255)
T ss_pred -----------C--------------e-------E-------------eeeEEE-----EEE-ecCC--CcEEEEECCcc
Confidence 1 2 3 778888 777 6 55 49999999999
Q ss_pred ccccChHHHHHHHHHHhhccchHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEEE
Q psy7329 240 WNSLSSQEVVDFVRERIGKQEKLIDICEELFDKCLAPDSLGDGTGCDNMTCVLV 293 (336)
Q Consensus 240 ~d~ls~~ei~~iv~~~~~~~~~~~~~a~~L~~~a~~~~~~~~~g~~DNiTvivv 293 (336)
|++++++++.+++...... .++.++|+.|++.|..+ +..||+|+|||
T Consensus 209 ~~~l~~~~i~~~~~~~~~~-~~~~~~~~~l~~~a~~~------~~~Dn~T~ivv 255 (255)
T smart00332 209 WDVLSNQEVVDIVRKHLSK-SDPEEAAKRLIDLALAR------GSKDNITVIVV 255 (255)
T ss_pred ccCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHc------CCCCCeEEEEC
Confidence 9999999999999886322 25889999999999973 55899999985
No 11
>KOG1323|consensus
Probab=99.97 E-value=2.1e-30 Score=239.80 Aligned_cols=240 Identities=24% Similarity=0.367 Sum_probs=166.3
Q ss_pred HHHHHHhhhhhhccHHHHHHHHHHHHhcCCCCCCCCCCcEEEEEEecCeEEEEEcCCceEEEEeCCccccCCCCCCCCCH
Q psy7329 39 AVVVLFVDNEVSLSREDIQKRMKEALDHKDVPGMDSGCTAVVVLFVDNEVYIANAGDSRAVLCRDSKAQDLSEDHKPEDE 118 (336)
Q Consensus 39 ~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~GtT~~~~li~~~~l~vAnvGDSR~~l~r~~~~~~lt~DH~~~~~ 118 (336)
.++..+++.+|+.+.+.|.+. .+.. +..+|||+++++..-+++|+||+||||++++|+++++.||++.+|.
T Consensus 218 ~LViGAlEsAFqemDeqiare----r~~~---~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPe-- 288 (493)
T KOG1323|consen 218 HLVIGALESAFQEMDEQIARE----RQVW---RLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPE-- 288 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHH----HHhh---cCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcH--
Confidence 344445555555555544443 3332 3345999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHhCCccccC--CCcCCCcccccccccCCCch-hhhhhhcCCCCcccccccccCCCCchHHhHhHHhhcCCccc
Q psy7329 119 AEKSRIVKAGGEVTPC--GRVNGGLNLSRALGKSRFSP-AYFLALNNSGTAHLSKRKLLDHKPEDEAEKSRIVKAGGEVT 195 (336)
Q Consensus 119 ~E~~Ri~~~gg~v~~~--~r~~g~l~~sRalGd~~~~~-~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~ri~~a~g~v~ 195 (336)
.|||||+.. +++.++ +.-+..|..+|.+--.+++. -.|+++++.||.+..-.. .|+++.. |. -- .
T Consensus 289 tERqRlQ~L-af~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~-~DLr~pL------I~-ge---g 356 (493)
T KOG1323|consen 289 TERQRLQEL-AFRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEE-EDLRFPL------IS-GE---G 356 (493)
T ss_pred HHHHHHHHH-hhcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhh-hcCCcce------ec-cc---c
Confidence 789999999 666653 22233466666654444333 367899999999876554 6665542 10 00 1
Q ss_pred cCCccCCCccccccccceeeC---------------Cce-eEec--cCCCCCeEEEEEcCCcccccChHHHHHHHHHHhh
Q psy7329 196 PCGRVNGGLNLSRALGKSRFS---------------PAY-FLAL--NNSRTDEFIVSACDGIWNSLSSQEVVDFVRERIG 257 (336)
Q Consensus 196 ~~~r~~~~~~~~~~~pdi~~~---------------~~~-~~~~--l~~~~dd~lIlaSDGl~d~ls~~ei~~iv~~~~~ 257 (336)
.+-|+.+++.++|..+|..++ |.. .+++ ++..+||++|||||||||+++++|++.+|...+.
T Consensus 357 rkaRll~TigVsRGlGDH~Lkv~dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~ 436 (493)
T KOG1323|consen 357 RKARLLATIGVSRGLGDHHLKVVDSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLP 436 (493)
T ss_pred hhhhhhhhheeccccCcceeeeecCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcC
Confidence 234677777777777766532 211 2220 3334579999999999999999999999999887
Q ss_pred cc-----chHHHHHHHHHHHHhcC-----CCCC--CCCCCCCeEEEEEEcCCCC
Q psy7329 258 KQ-----EKLIDICEELFDKCLAP-----DSLG--DGTGCDNMTCVLVKIEPGR 299 (336)
Q Consensus 258 ~~-----~~~~~~a~~L~~~a~~~-----~~~~--~~g~~DNiTvivv~l~~~~ 299 (336)
.. .....+|+.|+..|.-. |.+. .-|+.|||||.||.+....
T Consensus 437 ~~dp~Dp~RYt~aaqdlva~arg~~k~rgWr~~n~~lgSgDDIsVfVIPL~~~~ 490 (493)
T KOG1323|consen 437 STDPADPSRYTQAAQDLVAAARGQQKDRGWRMNNGGLGSGDDISVFVIPLKYCA 490 (493)
T ss_pred CCCCCChhHHHHHHHHHHHHhcCccCCCceeccCCCcCCCCceEEEEEeccCCC
Confidence 53 34567888888876432 1111 2347899999999998754
No 12
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.97 E-value=3.4e-30 Score=263.93 Aligned_cols=215 Identities=20% Similarity=0.240 Sum_probs=152.0
Q ss_pred CceeeecCCch----HHHHHHHHHHHHHhcccCCCCCCCchhHHHHHHhhhhhhccHHHHHHHHHHHHhcCCCCCCCCCC
Q psy7329 1 MVSTVDFESGG----LSREDIQKRMKEALDHKDVPGMDSGCTAVVVLFVDNEVSLSREDIQKRMKEALDHKDVPGMDSGC 76 (336)
Q Consensus 1 ~~~~~DghgG~----~A~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~Gt 76 (336)
+|+|+|||||. +||+++++.|.+.+........ .....+++++..+|+.|.+...+. ...+..+| ||
T Consensus 416 L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~------~~~~~L~~ai~~AN~~I~~~~~~~-~~~~~~~M--GT 486 (645)
T PRK14559 416 LYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDEL------PDEETIREAIYLANEAIYDLNQQN-ARSGSGRM--GT 486 (645)
T ss_pred EEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhcccc------cHHHHHHHHHHHHHHHHHHHhhhc-ccccCCCC--Cc
Confidence 47899999965 4677788888777653211111 013457788888888886642211 11123345 99
Q ss_pred cEEEEEEecCeEEEEEcCCceEEEE-eCCccccCCCCCCCCCHHHHHHHHHhCCccccCC--CcCCCcccccccccCCCc
Q psy7329 77 TAVVVLFVDNEVYIANAGDSRAVLC-RDSKAQDLSEDHKPEDEAEKSRIVKAGGEVTPCG--RVNGGLNLSRALGKSRFS 153 (336)
Q Consensus 77 T~~~~li~~~~l~vAnvGDSR~~l~-r~~~~~~lt~DH~~~~~~E~~Ri~~~gg~v~~~~--r~~g~l~~sRalGd~~~~ 153 (336)
|++++++.++++|||||||||+|++ |+|++.+||+||++.+. +++.| +.... ...+...+||+||+...+
T Consensus 487 Tlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~-----lv~~G--i~~~~a~~~p~~~~LTrALG~~~~~ 559 (645)
T PRK14559 487 TLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQR-----EIQRG--VEPQIAYARPDAYQLTQALGPRDNS 559 (645)
T ss_pred eeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHH-----HHHhC--CCHHHHhcCcccceeeeccCCCCCC
Confidence 9999999999999999999999998 56899999999998743 45553 22211 123567899999986541
Q ss_pred hhhhhhhcCCCCcccccccccCCCCchHHhHhHHhhcCCccccCCccCCCccccccccceeeCCceeEeccCCCCCeEEE
Q psy7329 154 PAYFLALNNSGTAHLSKRKLLDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSRTDEFIV 233 (336)
Q Consensus 154 ~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~ri~~a~g~v~~~~r~~~~~~~~~~~pdi~~~~~~~~~~l~~~~dd~lI 233 (336)
. ..||+. .+. +.++ ++||
T Consensus 560 -----------------------------------------~-------------l~Pdi~-----~~~-L~~g--D~lL 577 (645)
T PRK14559 560 -----------------------------------------A-------------IQPDIQ-----FLE-IEED--TLLL 577 (645)
T ss_pred -----------------------------------------c-------------ccceEE-----EEE-cCCC--CEEE
Confidence 1 568888 888 8875 9999
Q ss_pred EEcCCcccc-cChHHHHHHHHHHhhccchHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEEEEcCCCC
Q psy7329 234 SACDGIWNS-LSSQEVVDFVRERIGKQEKLIDICEELFDKCLAPDSLGDGTGCDNMTCVLVKIEPGR 299 (336)
Q Consensus 234 laSDGl~d~-ls~~ei~~iv~~~~~~~~~~~~~a~~L~~~a~~~~~~~~~g~~DNiTvivv~l~~~~ 299 (336)
||||||||+ +......+.+...+....++.++|+.|++.|+. +|++||||+|||+++...
T Consensus 578 LCSDGL~D~~~ve~~~~~~l~~il~~~~~l~~aa~~Li~~Al~------~gg~DNITvIvV~l~~~p 638 (645)
T PRK14559 578 LCSDGLSDNDLLETHWQTHLLPLLSSSANLDQGLNKLIDLANQ------YNGHDNITAILVRLKVRP 638 (645)
T ss_pred EECCCCCCCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH------cCCCCcEEEEEEEeccCC
Confidence 999999994 223223333333333347899999999999997 456999999999997643
No 13
>KOG1379|consensus
Probab=99.83 E-value=2e-19 Score=166.90 Aligned_cols=145 Identities=19% Similarity=0.257 Sum_probs=105.5
Q ss_pred CCCCcEEEEEEe--cCeEEEEEcCCceEEEEeCCccccCCCCCCCCCHHHHHHHHHhCCccccCCCcCCCcccccccccC
Q psy7329 73 DSGCTAVVVLFV--DNEVYIANAGDSRAVLCRDSKAQDLSEDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKS 150 (336)
Q Consensus 73 ~~GtT~~~~li~--~~~l~vAnvGDSR~~l~r~~~~~~lt~DH~~~~~~E~~Ri~~~gg~v~~~~r~~g~l~~sRalGd~ 150 (336)
.++||++++++. +++||+||+|||...++|+|++++-|..+...
T Consensus 166 vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~---------------------------------- 211 (330)
T KOG1379|consen 166 VGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHY---------------------------------- 211 (330)
T ss_pred CCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheec----------------------------------
Confidence 358899999998 89999999999999999999999988654321
Q ss_pred CCchhhhhhhcCCCCcccccccccCCCCchHHhHhHHhhcCCccccCCccCCCccccccccceeeCCceeEeccCCCCCe
Q psy7329 151 RFSPAYFLALNNSGTAHLSKRKLLDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSRTDE 230 (336)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~ri~~a~g~v~~~~r~~~~~~~~~~~pdi~~~~~~~~~~l~~~~dd 230 (336)
|..||.|....+|. ...+.|. - ...|.+ .++ ++++ |
T Consensus 212 -FN~PyQLs~~p~~~----~~~~~d~------------------p-------------~~ad~~-----~~~-v~~G--D 247 (330)
T KOG1379|consen 212 -FNTPYQLSSPPEGY----SSYISDV------------------P-------------DSADVT-----SFD-VQKG--D 247 (330)
T ss_pred -cCCceeeccCCccc----cccccCC------------------c-------------cccceE-----EEe-ccCC--C
Confidence 11122222221111 0000111 0 334566 888 9998 9
Q ss_pred EEEEEcCCcccccChHHHHHHHHHHhh-ccchHHHHHHHHHHHHhcCC-----------------CCCCCCCCCCeEEEE
Q psy7329 231 FIVSACDGIWNSLSSQEVVDFVRERIG-KQEKLIDICEELFDKCLAPD-----------------SLGDGTGCDNMTCVL 292 (336)
Q Consensus 231 ~lIlaSDGl~d~ls~~ei~~iv~~~~~-~~~~~~~~a~~L~~~a~~~~-----------------~~~~~g~~DNiTviv 292 (336)
+||+|||||||+|.+++|.+++..... ....++..|+.|.+.|.... ....+|+.||||+||
T Consensus 248 vIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvl 327 (330)
T KOG1379|consen 248 VIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVL 327 (330)
T ss_pred EEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEE
Confidence 999999999999999999999998877 56789999999998875432 222577899999999
Q ss_pred EEc
Q psy7329 293 VKI 295 (336)
Q Consensus 293 v~l 295 (336)
..+
T Consensus 328 s~v 330 (330)
T KOG1379|consen 328 SSV 330 (330)
T ss_pred ecC
Confidence 753
No 14
>KOG0618|consensus
Probab=99.77 E-value=2.7e-18 Score=177.33 Aligned_cols=213 Identities=21% Similarity=0.265 Sum_probs=167.5
Q ss_pred ceeeecCCchHHHHHHHHHHHHHhcccCCCCCCCchhHHHHHHhhhhhhccHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q psy7329 2 VSTVDFESGGLSREDIQKRMKEALDHKDVPGMDSGCTAVVVLFVDNEVSLSREDIQKRMKEALDHKDVPGMDSGCTAVVV 81 (336)
Q Consensus 2 ~~~~DghgG~~A~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~GtT~~~~ 81 (336)
|+.|||-+-.-....++..+...+.++.-...+. .+.|...+.+........+...|..++++
T Consensus 554 ~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~e-----------------t~~mr~~fl~~~rklg~~g~~lg~~~~~~ 616 (1081)
T KOG0618|consen 554 FGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGNE-----------------TEQMRNTFLRLNRKLGEEGQVLGGSVVLC 616 (1081)
T ss_pred EEEEcCCCchhHHHHHHHHHHHHHHHHHHhccCh-----------------HHHHHHHHHHHhhhhhhhhccccchhhhe
Confidence 7899999998888888888877775422211111 11133333333322223333347777777
Q ss_pred EEec--------CeEEEEEcCCceEEEEeCCccccCCCCC-CCCCHHHHHHHHHhCCccccCCCcCCCcccccccccCCC
Q psy7329 82 LFVD--------NEVYIANAGDSRAVLCRDSKAQDLSEDH-KPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRF 152 (336)
Q Consensus 82 li~~--------~~l~vAnvGDSR~~l~r~~~~~~lt~DH-~~~~~~E~~Ri~~~gg~v~~~~r~~g~l~~sRalGd~~~ 152 (336)
.+.. .++++||+|+|.++++++|+..++|+-. -...++|.+||+..+|+|+++++++|+...||++|.+..
T Consensus 617 ~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~RI~~~~g~i~ed~k~ngvt~~tR~iG~~~l 696 (1081)
T KOG0618|consen 617 QIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKRIVDSKGFITEDNKLNGVTSSTRAIGPFSL 696 (1081)
T ss_pred eecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHHHHHhcCeecCCCeeeceeeeeeecccccc
Confidence 7764 4799999999999999999999988865 445999999999999999999999999999999999988
Q ss_pred chhhhhhhcCCCCcccccccccCCCCchHHhHhHHhhcCCccccCCccCCCccccccccceeeCCceeEeccCCCCCeEE
Q psy7329 153 SPAYFLALNNSGTAHLSKRKLLDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSRTDEFI 232 (336)
Q Consensus 153 ~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~ri~~a~g~v~~~~r~~~~~~~~~~~pdi~~~~~~~~~~l~~~~dd~l 232 (336)
+|. | . +.|+|. .+. |.+. |+||
T Consensus 697 ~P~-------------------------------v-------~-------------p~Phv~-----~~~-Lt~q-dE~L 718 (1081)
T KOG0618|consen 697 FPH-------------------------------V-------L-------------PDPHVS-----VVI-LTEQ-DEFL 718 (1081)
T ss_pred ccc-------------------------------c-------c-------------CCCcee-----eEe-cccC-ceEE
Confidence 551 2 3 888888 888 9998 9999
Q ss_pred EEEcCCcccccChHHHHHHHHHHhhccchHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEEEEcCCCC
Q psy7329 233 VSACDGIWNSLSSQEVVDFVRERIGKQEKLIDICEELFDKCLAPDSLGDGTGCDNMTCVLVKIEPGR 299 (336)
Q Consensus 233 IlaSDGl~d~ls~~ei~~iv~~~~~~~~~~~~~a~~L~~~a~~~~~~~~~g~~DNiTvivv~l~~~~ 299 (336)
|+|+-+||++|+-+++++.+++. .++-.+|+.|++.|...+ ..||++|+||++....
T Consensus 719 Ivgn~~lW~~Lsid~a~~~vRn~----~dpL~AAkKL~d~AqSYg------c~~nv~vlVv~l~~~~ 775 (1081)
T KOG0618|consen 719 IVGNKQLWSVLSIDTAVDAVRNV----EDPLLAAKKLCDLAQSYG------CAENVSVLVVRLNHLE 775 (1081)
T ss_pred EEcchHHhhhccHHHHHHHHhcC----CchHHHHHHHHHHHHhcc------cccCeeEEEEEeecch
Confidence 99999999999999999999976 889999999999999854 4899999999986544
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.61 E-value=2.8e-14 Score=126.27 Aligned_cols=158 Identities=17% Similarity=0.210 Sum_probs=104.7
Q ss_pred CceeeecCCchHHHHHHHHHHHHHhcccCCCCCCCchhHHHHHHhhhhhhccHHHHHHHHHHHHhcCCCCCCCCCCcEEE
Q psy7329 1 MVSTVDFESGGLSREDIQKRMKEALDHKDVPGMDSGCTAVVVLFVDNEVSLSREDIQKRMKEALDHKDVPGMDSGCTAVV 80 (336)
Q Consensus 1 ~~~~~DghgG~~A~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~GtT~~~ 80 (336)
+|.++||||+..++..+...+...+........ .+...+...++. ........ .|+|+++
T Consensus 32 ~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~----------~~~~~l~~~n~~--------l~~~~~~~--~~~T~~~ 91 (193)
T smart00331 32 LIAIADVMGKGLAAALAMSMARSALRTLLSEGI----------SLSQILERLNRA--------IYENGEDG--MFATLFL 91 (193)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHHHhhcCC----------CHHHHHHHHHHH--------HHhcCCCC--cEEEEEE
Confidence 478999999888888888877777654211100 111222222222 22222223 4999999
Q ss_pred EEE--ecCeEEEEEcCCceEEEEe-CCccccCCCCCCCCCHHHHHHHHHhCCccccCCCcCCCcccccccccCCCchhhh
Q psy7329 81 VLF--VDNEVYIANAGDSRAVLCR-DSKAQDLSEDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYF 157 (336)
Q Consensus 81 ~li--~~~~l~vAnvGDSR~~l~r-~~~~~~lt~DH~~~~~~E~~Ri~~~gg~v~~~~r~~g~l~~sRalGd~~~~~~~~ 157 (336)
+++ ..++++++|+||+|+|+++ ++...+++.+.+ +.+|....
T Consensus 92 ~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~~------------------------------~~lG~~~~----- 136 (193)
T smart00331 92 ALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDLG------------------------------APLGLEPD----- 136 (193)
T ss_pred EEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCCC------------------------------ceeeeCCC-----
Confidence 998 5789999999999999998 555555544311 12222111
Q ss_pred hhhcCCCCcccccccccCCCCchHHhHhHHhhcCCccccCCccCCCccccccccceeeCCceeEeccCCCCCeEEEEEcC
Q psy7329 158 LALNNSGTAHLSKRKLLDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSRTDEFIVSACD 237 (336)
Q Consensus 158 ~~~~~~~~~~~~k~~~~~~~p~~~~~~~ri~~a~g~v~~~~r~~~~~~~~~~~pdi~~~~~~~~~~l~~~~dd~lIlaSD 237 (336)
..++.. .++ +.++ |.|+|+||
T Consensus 137 ---------------------------------------------------~~~~~~-----~~~-l~~g--d~l~l~TD 157 (193)
T smart00331 137 ---------------------------------------------------VEVDVR-----ELT-LEPG--DLLLLYTD 157 (193)
T ss_pred ---------------------------------------------------CcceeE-----EEe-eCCC--CEEEEECC
Confidence 223344 666 8887 99999999
Q ss_pred CcccccChHHHHHHHHHHhhccchHHHHHHHHHHHHh
Q psy7329 238 GIWNSLSSQEVVDFVRERIGKQEKLIDICEELFDKCL 274 (336)
Q Consensus 238 Gl~d~ls~~ei~~iv~~~~~~~~~~~~~a~~L~~~a~ 274 (336)
||||.++.+++.+++.+.. ..+++++++.|.+...
T Consensus 158 Gl~e~~~~~~l~~~l~~~~--~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 158 GLTEARNPERLEELLEELL--GSPPAEIAQRILEELL 192 (193)
T ss_pred CccccCChHHHHHHHHHhc--CCCHHHHHHHHHHHHh
Confidence 9999999999999998863 2468888888887654
No 16
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.44 E-value=1.8e-13 Score=122.76 Aligned_cols=103 Identities=19% Similarity=0.253 Sum_probs=56.9
Q ss_pred ceeeecCCchHHHH----HHHHHHHHHhcccCCCCCCCchhHHHHHHhhhhhhccHHHHHHHH----HHHHhcCCCCCCC
Q psy7329 2 VSTVDFESGGLSRE----DIQKRMKEALDHKDVPGMDSGCTAVVVLFVDNEVSLSREDIQKRM----KEALDHKDVPGMD 73 (336)
Q Consensus 2 ~~~~DghgG~~A~~----~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~----~~~~~~~~~~~~~ 73 (336)
++|.||+||...++ .+++.+.+.+....... . .. ..+..+......+...+ ...........+
T Consensus 27 ~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~----~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 97 (212)
T PF13672_consen 27 AAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQE----S-PS---SIEALIRAIKKEILSIVRAFQSAKQADLELRDY- 97 (212)
T ss_dssp EEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCH----H-HH---HHHHHHHHHHHHHHHHH----HHHHHSGGGTT--
T ss_pred EEEEECCCCCchhHHHHHHHHHHHHHHHHhccccc----c-hH---HHHHHHHHHHHHHHHHhhhhhhhhhcccccccc-
Confidence 58999999776544 45666655554322110 0 00 01222222222332211 111122233444
Q ss_pred CCCcEEEEEEecCeEEEEEcCCceEEE-EeCCccccCCCCCC
Q psy7329 74 SGCTAVVVLFVDNEVYIANAGDSRAVL-CRDSKAQDLSEDHK 114 (336)
Q Consensus 74 ~GtT~~~~li~~~~l~vAnvGDSR~~l-~r~~~~~~lt~DH~ 114 (336)
+||++++++.++.++++|+||||+|+ .+++++..++.+|+
T Consensus 98 -~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~ 138 (212)
T PF13672_consen 98 -GTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHS 138 (212)
T ss_dssp -EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---B
T ss_pred -CceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCcc
Confidence 99999999999999999999999965 58899999999887
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.36 E-value=1.9e-11 Score=129.45 Aligned_cols=174 Identities=18% Similarity=0.191 Sum_probs=112.5
Q ss_pred ceeeecCCchHHHHHHHHHHHHHhcccCCCCCCCchhHHHHHHhhhhhhccHHHHHHHHHHHHhcCCCCCCCCCCcEEEE
Q psy7329 2 VSTVDFESGGLSREDIQKRMKEALDHKDVPGMDSGCTAVVVLFVDNEVSLSREDIQKRMKEALDHKDVPGMDSGCTAVVV 81 (336)
Q Consensus 2 ~~~~DghgG~~A~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~GtT~~~~ 81 (336)
+.+-||.|+...|........+.+......+.+ .+.++ +.++..........+ .+|+.++
T Consensus 583 ~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~----------~~~ai--------~~lN~~L~~~~~~~~--faTl~l~ 642 (764)
T TIGR02865 583 VAISDGMGSGPEAAQESSACVRLLEKFLESGFD----------REVAI--------KTVNSILSLRSTDEK--FSTLDLS 642 (764)
T ss_pred EEEEcccCCCHHHHHHHHHHHHHHHHHHHcCCC----------HHHHH--------HHHHHHHHhCCCCCe--EEEEEEE
Confidence 578899987777776665555554321111110 11222 222222221122334 8999999
Q ss_pred EEe--cCeEEEEEcCCceEEEEeCCccccCCCCCCCCCHHHHHHHHHhCCccccCCCcCCCcccccccccCCCchhhhhh
Q psy7329 82 LFV--DNEVYIANAGDSRAVLCRDSKAQDLSEDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLA 159 (336)
Q Consensus 82 li~--~~~l~vAnvGDSR~~l~r~~~~~~lt~DH~~~~~~E~~Ri~~~gg~v~~~~r~~g~l~~sRalGd~~~~~~~~~~ 159 (336)
+++ .+++.++|+|+++.|+.|++++..++..+-|. |.+.
T Consensus 643 ~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lPl------------Gil~--------------------------- 683 (764)
T TIGR02865 643 VIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLPI------------GILD--------------------------- 683 (764)
T ss_pred EEECCCCeEEEEecCCCceEEEECCEEEEecCCCcee------------Eecc---------------------------
Confidence 986 68999999999999999998877775332221 1111
Q ss_pred hcCCCCcccccccccCCCCchHHhHhHHhhcCCccccCCccCCCccccccccceeeCCceeEeccCCCCCeEEEEEcCCc
Q psy7329 160 LNNSGTAHLSKRKLLDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSRTDEFIVSACDGI 239 (336)
Q Consensus 160 ~~~~~~~~~~k~~~~~~~p~~~~~~~ri~~a~g~v~~~~r~~~~~~~~~~~pdi~~~~~~~~~~l~~~~dd~lIlaSDGl 239 (336)
. .+++.. ..+ +.++ |+|+|+||||
T Consensus 684 -----------------------------------~-------------~~~~~~-----~~~-L~~G--D~Lll~SDGv 707 (764)
T TIGR02865 684 -----------------------------------E-------------VDVELV-----RKK-LKNG--DLIVMVSDGV 707 (764)
T ss_pred -----------------------------------C-------------CccceE-----EEE-eCCC--CEEEEECCCC
Confidence 0 233444 667 8887 9999999999
Q ss_pred ccccChHH-----HHHHHHHHhhccchHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEEEEc
Q psy7329 240 WNSLSSQE-----VVDFVRERIGKQEKLIDICEELFDKCLAPDSLGDGTGCDNMTCVLVKI 295 (336)
Q Consensus 240 ~d~ls~~e-----i~~iv~~~~~~~~~~~~~a~~L~~~a~~~~~~~~~g~~DNiTvivv~l 295 (336)
||..++.+ +.+++... ...+++++++.|++.++.... +...||+|++++++
T Consensus 708 ~E~~~~~~~~~~~l~~~l~~~--~~~~p~ela~~Il~~a~~~~~---~~~~DD~Tvlvirv 763 (764)
T TIGR02865 708 LEGEKEVEGKVLWLVRKLKET--NTNDPEEIAEYLLEKAKELRS---GKIKDDMTVIVAKV 763 (764)
T ss_pred CcCCcccccHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhcC---CCCCCCeEEEEEEe
Confidence 99887543 45555432 235799999999999986542 33589999999975
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.29 E-value=1.6e-10 Score=101.76 Aligned_cols=69 Identities=13% Similarity=0.277 Sum_probs=47.4
Q ss_pred eEeccCCCCCeEEEEEcCCcccccChHH-------HHHHHHHHhhccchHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEE
Q psy7329 220 FLALNNSRTDEFIVSACDGIWNSLSSQE-------VVDFVRERIGKQEKLIDICEELFDKCLAPDSLGDGTGCDNMTCVL 292 (336)
Q Consensus 220 ~~~~l~~~~dd~lIlaSDGl~d~ls~~e-------i~~iv~~~~~~~~~~~~~a~~L~~~a~~~~~~~~~g~~DNiTviv 292 (336)
+++ +.++ |.|+|+||||+|....+. +.+++... ...+++++++.|++.+.... .+...||+|+++
T Consensus 118 ~~~-l~~g--d~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~~~~---~~~~~DD~tvl~ 189 (193)
T PF07228_consen 118 EIQ-LEPG--DRLLLYTDGLFEALNEDGEFFGEERLLELLDEN--RGLSPQEIIDALLEAIDRFG---KGPLRDDITVLV 189 (193)
T ss_dssp EEE---TT--EEEEEECHHHCTTTCHHCHHCCCHHHHHHHHCH--TTS-HHHHHHHHHHHHHHHT---TSSTSS-EEEEE
T ss_pred EEE-eccc--cEEEEeCCChhhccCCccchhHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHhc---CCCCCCceEEEE
Confidence 556 8887 999999999999984432 24444432 33678999999999887622 245689999999
Q ss_pred EEcC
Q psy7329 293 VKIE 296 (336)
Q Consensus 293 v~l~ 296 (336)
++++
T Consensus 190 ~~~~ 193 (193)
T PF07228_consen 190 IRRQ 193 (193)
T ss_dssp EEE-
T ss_pred EEEC
Confidence 9874
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=97.55 E-value=0.0087 Score=58.53 Aligned_cols=70 Identities=14% Similarity=0.227 Sum_probs=50.1
Q ss_pred eEeccCCCCCeEEEEEcCCccc-------ccChHHHHHHHHHHhhccchHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEE
Q psy7329 220 FLALNNSRTDEFIVSACDGIWN-------SLSSQEVVDFVRERIGKQEKLIDICEELFDKCLAPDSLGDGTGCDNMTCVL 292 (336)
Q Consensus 220 ~~~~l~~~~dd~lIlaSDGl~d-------~ls~~ei~~iv~~~~~~~~~~~~~a~~L~~~a~~~~~~~~~g~~DNiTviv 292 (336)
... +.++ |.+++.|||+.| .+..+...+++... .+.+++++++.+.+....... .....||+|+++
T Consensus 290 ~~~-l~~g--d~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~i~~~l~~~~~--~~~~~DDiTll~ 362 (367)
T COG2208 290 SLQ-LEPG--DLLVLYTDGVTEARNSDGEFFGLERLLKILGRL--LGQPAEEILEAILESLEELQG--DQIQDDDITLLV 362 (367)
T ss_pred eEE-ecCC--CEEEEEcCCeeeeecCCccEecHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHhhC--CccccCceEEEE
Confidence 556 7786 999999999999 45556666666652 235678888888777654332 233478899999
Q ss_pred EEcC
Q psy7329 293 VKIE 296 (336)
Q Consensus 293 v~l~ 296 (336)
+++.
T Consensus 363 lk~~ 366 (367)
T COG2208 363 LKVK 366 (367)
T ss_pred EEec
Confidence 9875
No 20
>KOG0699|consensus
Probab=96.63 E-value=0.0017 Score=62.37 Aligned_cols=131 Identities=30% Similarity=0.452 Sum_probs=85.1
Q ss_pred cCCCCchHHhHhHHhhcCCccccCCccCCCccccccccceeeCCceeEeccC-------CCCCeEEEEEcCCcccccChH
Q psy7329 174 LDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNN-------SRTDEFIVSACDGIWNSLSSQ 246 (336)
Q Consensus 174 ~~~~p~~~~~~~ri~~a~g~v~~~~r~~~~~~~~~~~pdi~~~~~~~~~~l~-------~~~dd~lIlaSDGl~d~ls~~ 246 (336)
.||||..+-+..||.+|||.|+.-+||||+|+++|+.+|..|+.+...+ +. |+ -.+++|.-+--|=++-.+
T Consensus 367 ~DHKPEDevE~~RI~~AGG~vtlDGRVNGGLNLSRA~GDHaYK~N~~Lp-~eEQMIsALPD-iK~l~lTpedEFmVvACD 444 (542)
T KOG0699|consen 367 VDHKPEDEVETNRIHAAGGQVTLDGRVNGGLNLSRAFGDHAYKKNQELP-LEEQMISALPD-IKILALTPEDEFMVVACD 444 (542)
T ss_pred cCCCcccHHHHHHHHhcCCeEeecceecCccchhhhhhhhhhhcccCCC-hHHHHhhhccc-ceeEeecCcccEEEEEcc
Confidence 5899999999999999999999999999999999999999988666644 32 23 356777777777777777
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHhcCCCCCC--CCCCCCeEEEEEEcCCCCCCCCCCCcccccccccc
Q psy7329 247 EVVDFVRERIGKQEKLIDICEELFDKCLAPDSLGD--GTGCDNMTCVLVKIEPGRLSRDNAAPISVASAKRS 316 (336)
Q Consensus 247 ei~~iv~~~~~~~~~~~~~a~~L~~~a~~~~~~~~--~g~~DNiTvivv~l~~~~~~~~~~~~~~~~~~~~~ 316 (336)
-|+..+... ..-++.+.++. .+..+.. .-..|++ +.=.-......+||++.|...-+++.
T Consensus 445 GIWN~MsSq-----eVVdFvr~~l~---~n~~ls~iceeL~D~C--LAp~T~GDGTGCDNMT~ii~~Fkrk~ 506 (542)
T KOG0699|consen 445 GIWNSMSSQ-----EVVDFVRDLLA---KNSSLSEICEELCDAC--LAPSTDGDGTGCDNMTVIITTFKRKS 506 (542)
T ss_pred chhhhccHH-----HHHHHHHHHHh---cCchHHHHHHHHHHhh--cCCCCCCCCcCCCcceEEEEEeccch
Confidence 666665542 22222222221 1000000 0002332 22233566778999999988766443
No 21
>KOG0698|consensus
Probab=95.92 E-value=0.0013 Score=63.61 Aligned_cols=126 Identities=26% Similarity=0.309 Sum_probs=85.4
Q ss_pred cCCCCchHHhHhHHhhcCCccccC---CccCCCccccccccceeeCCceeEeccCCCCCeEEEEEcCCcccccChHHHHH
Q psy7329 174 LDHKPEDEAEKSRIVKAGGEVTPC---GRVNGGLNLSRALGKSRFSPAYFLALNNSRTDEFIVSACDGIWNSLSSQEVVD 250 (336)
Q Consensus 174 ~~~~p~~~~~~~ri~~a~g~v~~~---~r~~~~~~~~~~~pdi~~~~~~~~~~l~~~~dd~lIlaSDGl~d~ls~~ei~~ 250 (336)
.||+|..+.++.||..+||+|..+ .|++|+++++|+.+|..+++.... -.|+ -...++.+|.=|=+|-.+-|++
T Consensus 179 ~DHkP~~~~E~~RI~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~~~v~--a~Pe-i~~~~~~~~deFLiLasDGiwD 255 (330)
T KOG0698|consen 179 VDHKPDREDERERIEAAGGRVSNWGGVWRVNGVLAVSRAFGDVELKSQGVI--AEPE-IQQVKINSDDEFLILASDGIWD 255 (330)
T ss_pred CCCCCCcHHHHHHHHHcCCEEEEcCCcceEeceEEEeeecCCHHhcCCcEe--cCCc-eEEEEcCCCCcEEEEeCCchhc
Confidence 699999999999999999999866 399999999999999998742222 3444 3566777766667788888887
Q ss_pred HHHHHhhccchHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEEEEcCCCCCCCCCCCcccccccccc
Q psy7329 251 FVRERIGKQEKLIDICEELFDKCLAPDSLGDGTGCDNMTCVLVKIEPGRLSRDNAAPISVASAKRS 316 (336)
Q Consensus 251 iv~~~~~~~~~~~~~a~~L~~~a~~~~~~~~~g~~DNiTvivv~l~~~~~~~~~~~~~~~~~~~~~ 316 (336)
++.+ +++++.+...... .....-....+........+.||++.+.+..+...
T Consensus 256 v~s~--------qeav~~V~~~~~~------~~~~~~a~~~l~~~a~~~~s~DnitvvvV~l~~~~ 307 (330)
T KOG0698|consen 256 VVSN--------QEAVDLVRDELAS------ISSPLAAAKLLATEALSRGSKDNITVVVVRLKSSP 307 (330)
T ss_pred ccCh--------HHHHHHHHHHhhc------cccHHHHHHHHHHHHhhcCCCCCeEEEEEEecCcc
Confidence 6655 2333322222100 01122233444444555668899999988777543
No 22
>KOG0697|consensus
Probab=95.03 E-value=0.053 Score=50.64 Aligned_cols=79 Identities=34% Similarity=0.490 Sum_probs=55.9
Q ss_pred cCCCCchHHhHhHHhhcCCccccCCccCCCccccccccceeeCC----ceeEeccCCCCCeEEEEEc--CCcccccChHH
Q psy7329 174 LDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSP----AYFLALNNSRTDEFIVSAC--DGIWNSLSSQE 247 (336)
Q Consensus 174 ~~~~p~~~~~~~ri~~a~g~v~~~~r~~~~~~~~~~~pdi~~~~----~~~~~~l~~~~dd~lIlaS--DGl~d~ls~~e 247 (336)
.||||....++.||+.|||.|. .-|+||.|+++|+.+|..|+. ..+.+++.|+++-+++.-+ |- |=++..+-
T Consensus 162 qDHKP~~p~EkeRIqnAGGSVM-IqRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eede-FivlACDG 239 (379)
T KOG0697|consen 162 QDHKPYLPKEKERIQNAGGSVM-IQRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDE-FIVLACDG 239 (379)
T ss_pred cCCCCCChHHHHHHhcCCCeEE-EEEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCc-EEEEEccc
Confidence 5889999999999999999874 679999999999999988762 1122224555434444332 23 44566677
Q ss_pred HHHHHHH
Q psy7329 248 VVDFVRE 254 (336)
Q Consensus 248 i~~iv~~ 254 (336)
|++++.+
T Consensus 240 IwDVMtn 246 (379)
T KOG0697|consen 240 IWDVMTN 246 (379)
T ss_pred hhhhccc
Confidence 7777766
No 23
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=87.97 E-value=0.48 Score=43.63 Aligned_cols=78 Identities=36% Similarity=0.463 Sum_probs=50.7
Q ss_pred cCCCCchHHhHhHHhhcCCccccCCccCCCccccccccceeeCCc--eeEeccCCCCCeEEEEEcCC-cccccChHHHHH
Q psy7329 174 LDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPA--YFLALNNSRTDEFIVSACDG-IWNSLSSQEVVD 250 (336)
Q Consensus 174 ~~~~p~~~~~~~ri~~a~g~v~~~~r~~~~~~~~~~~pdi~~~~~--~~~~~l~~~~dd~lIlaSDG-l~d~ls~~ei~~ 250 (336)
.+|+|....+..||..++|.+....|++|.++++|+.+|..+++. ..+. ..|. -..+--+++ -|=+|-.+-+++
T Consensus 137 ~dH~~~~~~E~~RI~~~gg~v~~~~rv~g~l~~sRalGd~~~k~~~~~~v~-~~P~--i~~~~l~~~d~flvlaSDGlwd 213 (254)
T PF00481_consen 137 RDHKPSNPDERERIRKAGGRVSENGRVNGVLAVSRALGDFDLKPPGKPGVI-AEPD--ISEVDLTPDDEFLVLASDGLWD 213 (254)
T ss_dssp ---STTSHHHHHHHHHTT-GEEETEEETTTBSSSB-EE-GGGTTCTSSSSB----E--EEEEEEBTTEEEEEEE-HHHHT
T ss_pred cccccchhhccceeeccccccccchhhhhccccccccccccccccccceee-eecc--cccccccccceEEEEEcccccc
Confidence 688999999999999999988778899999999999999987761 1111 2333 344444454 234678888888
Q ss_pred HHHH
Q psy7329 251 FVRE 254 (336)
Q Consensus 251 iv~~ 254 (336)
.+..
T Consensus 214 ~l~~ 217 (254)
T PF00481_consen 214 VLSN 217 (254)
T ss_dssp TSHH
T ss_pred cCCH
Confidence 7766
No 24
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=62.59 E-value=15 Score=32.58 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=40.5
Q ss_pred CeEEEEEcCCcc-----------cccChHHHHHHHHHHhhccchHHHHHHHHHHHHhcCC
Q psy7329 229 DEFIVSACDGIW-----------NSLSSQEVVDFVRERIGKQEKLIDICEELFDKCLAPD 277 (336)
Q Consensus 229 dd~lIlaSDGl~-----------d~ls~~ei~~iv~~~~~~~~~~~~~a~~L~~~a~~~~ 277 (336)
||.++..|.|+| |+|.++..++.|.+...+..-++++|.+|++.-.+|+
T Consensus 71 DDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 71 DDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred CCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Confidence 478888888887 5688888899988877777889999999999977653
No 25
>PLN03145 Protein phosphatase 2c; Provisional
Probab=47.32 E-value=2.1 Score=41.99 Aligned_cols=42 Identities=45% Similarity=0.640 Sum_probs=36.6
Q ss_pred cCCCCchHHhHhHHhhcCCccccCCccCCCccccccccceeeC
Q psy7329 174 LDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFS 216 (336)
Q Consensus 174 ~~~~p~~~~~~~ri~~a~g~v~~~~r~~~~~~~~~~~pdi~~~ 216 (336)
.||+|..+.+..||..++|.+. .+|++|.++++|+.+|..++
T Consensus 203 ~DH~~~~~~E~~RI~~~Gg~v~-~g~v~g~l~vTRalGD~~~k 244 (365)
T PLN03145 203 RDHKPMCSKERKRIEASGGYVY-DGYLNGQLNVARALGDWHME 244 (365)
T ss_pred CCCCCCCHHHHHHHHHcCCcee-cceECCcccccccccccccc
Confidence 6999999999999999999875 47999999999999997643
No 26
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=30.54 E-value=1.1e+02 Score=17.92 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=16.9
Q ss_pred EEEecCeEEEEEcCCceEEEE
Q psy7329 81 VLFVDNEVYIANAGDSRAVLC 101 (336)
Q Consensus 81 ~li~~~~l~vAnvGDSR~~l~ 101 (336)
++-.++.+||+-.|..|+.++
T Consensus 8 av~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 8 AVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEETTSEEEEEECCCTEEEEE
T ss_pred EEeCCCCEEEEECCCCEEEEC
Confidence 344789999999999998764
No 27
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=25.45 E-value=45 Score=24.95 Aligned_cols=18 Identities=11% Similarity=0.322 Sum_probs=14.4
Q ss_pred CeEEEEEcCCcccccChH
Q psy7329 229 DEFIVSACDGIWNSLSSQ 246 (336)
Q Consensus 229 dd~lIlaSDGl~d~ls~~ 246 (336)
+..+++++||+|-.+...
T Consensus 27 G~Rllva~nGv~lEv~r~ 44 (72)
T PF09436_consen 27 GHRLLVASNGVFLEVRRP 44 (72)
T ss_pred CcEEEEecCcEEEEEech
Confidence 589999999999765443
No 28
>PTZ00224 protein phosphatase 2C; Provisional
Probab=24.20 E-value=59 Score=32.14 Aligned_cols=42 Identities=45% Similarity=0.796 Sum_probs=36.2
Q ss_pred cCCCCchHHhHhHHhhcCCccccCCccCCCccccccccceeeC
Q psy7329 174 LDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFS 216 (336)
Q Consensus 174 ~~~~p~~~~~~~ri~~a~g~v~~~~r~~~~~~~~~~~pdi~~~ 216 (336)
.||+|..+.+..||..++|.+. ..|++|.+.++|+.+|..++
T Consensus 142 ~DH~~~~~~E~~RI~~~gg~v~-~~Rv~G~l~vTRalGd~~~K 183 (381)
T PTZ00224 142 EDHKPNNPGERQRIEACGGRVV-SNRVDGDLAVSRAFGDRSFK 183 (381)
T ss_pred cCCCCCCHHHHhHHHHccCEec-cccccCceeeecccCCcccc
Confidence 6899999889999999999875 36999999999999997644
No 29
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=22.99 E-value=2.4e+02 Score=21.10 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=33.5
Q ss_pred cCCCCCeEEEEEcCCcccccChHHHHHHHHHHhhccchHHHHHHHHHHH
Q psy7329 224 NNSRTDEFIVSACDGIWNSLSSQEVVDFVRERIGKQEKLIDICEELFDK 272 (336)
Q Consensus 224 l~~~~dd~lIlaSDGl~d~ls~~ei~~iv~~~~~~~~~~~~~a~~L~~~ 272 (336)
.+...+.++|+...| ++.-+++...++..+....+..++++.|.+.
T Consensus 11 ~~~v~~~~Vl~~p~~---~~~Ln~~g~~Iw~lldg~~tv~eI~~~L~~~ 56 (81)
T TIGR03859 11 WERAQDCYVLLYPEG---MVKLNDSAGEILELCDGKRSLAEIIQELAQR 56 (81)
T ss_pred eccccCcEEEEcCCc---eeeeChHHHHHHHHccCCCcHHHHHHHHHHH
Confidence 444435788888876 4556788888888877778888888887664
No 30
>COG1539 FolB Dihydroneopterin aldolase [Coenzyme metabolism]
Probab=22.58 E-value=4e+02 Score=21.80 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=47.1
Q ss_pred EEEcCCcccccChHHHHHHHHHHhhcc--chHHHHHHHHHHHHhcCCCCCCCCCCCCeEEEEEEcCCCCCCC
Q psy7329 233 VSACDGIWNSLSSQEVVDFVRERIGKQ--EKLIDICEELFDKCLAPDSLGDGTGCDNMTCVLVKIEPGRLSR 302 (336)
Q Consensus 233 IlaSDGl~d~ls~~ei~~iv~~~~~~~--~~~~~~a~~L~~~a~~~~~~~~~g~~DNiTvivv~l~~~~~~~ 302 (336)
-..||-|-|.++-.++.+.+.+.+... .-.+.+|+.|.+..+.+ ...++.+-|.+.++..+.
T Consensus 42 A~~~Ddl~dtl~Y~~v~~~i~~~v~~~~~~LiE~lA~~ia~~l~~~--------~~~v~~~~v~v~KP~ap~ 105 (121)
T COG1539 42 AAESDDLADTLNYAEVSELIKEIVEGKRFALIETLAEEIADLLLAR--------FPRVELVEVKVTKPKAPI 105 (121)
T ss_pred hcCccchhheecHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHhh--------CCccEEEEEEEECCCCCC
Confidence 356899999999999999999887755 45678888888887752 467788877777655443
No 31
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=21.91 E-value=1.3e+02 Score=21.67 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=22.4
Q ss_pred cChHHHHHHHHHHhhccchHHHHHHHHHH
Q psy7329 243 LSSQEVVDFVRERIGKQEKLIDICEELFD 271 (336)
Q Consensus 243 ls~~ei~~iv~~~~~~~~~~~~~a~~L~~ 271 (336)
-+++||..++..+ ++++.++++.|+.
T Consensus 19 hse~eIya~L~ec---nMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKEC---NMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHHh---CCCHHHHHHHHHh
Confidence 4778999999887 6899999999986
No 32
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=21.49 E-value=85 Score=29.69 Aligned_cols=26 Identities=38% Similarity=0.557 Sum_probs=19.0
Q ss_pred CCCCCCCcEEEEEEecCeEEEEEcCCc
Q psy7329 70 PGMDSGCTAVVVLFVDNEVYIANAGDS 96 (336)
Q Consensus 70 ~~~~~GtT~~~~li~~~~l~vAnvGDS 96 (336)
.+..+|||.+.+ +.++.+|..|+|-+
T Consensus 128 sG~LSGCT~i~A-~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 128 SGALSGCTMIYA-RKDNYFYAYHTGKS 153 (281)
T ss_dssp ---BSS-EEEEE-EETTEEEEEEEEES
T ss_pred CCccCCCEEEEE-EcCCeEEEEEcCCC
Confidence 456689998777 68899999999986
Done!