RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7329
(336 letters)
>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C. Protein phosphatase 2C is
a Mn++ or Mg++ dependent protein serine/threonine
phosphatase.
Length = 252
Score = 134 bits (338), Expect = 2e-37
Identities = 70/208 (33%), Positives = 92/208 (44%), Gaps = 56/208 (26%)
Query: 72 MDSGCTAVVVLFVDNEVYIANAGDSRAVLCRDSKA-QDLSEDHKPEDEAEKSRIVKAGGE 130
+ SG TAVV L ++Y+AN GDSRAVLCR+ A + L+EDHKP +E E+ RI AGG
Sbjct: 96 LSSGSTAVVALIRGQKLYVANVGDSRAVLCRNGNAIKQLTEDHKPSNEDERRRIRGAGGF 155
Query: 131 VTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSGTAHLSKRKLLDHKPEDEAEKSRIVKA 190
V+ GRVNG L +SRA G F S ++ K+ DE
Sbjct: 156 VSRNGRVNGVLAVSRAFG--DFELKKGKPQPVSAEPDVTSHKIT---ESDE--------- 201
Query: 191 GGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSRTDEFIVSACDGIWNSLSSQEVVD 250
FL L A DG+W+ LS QEVVD
Sbjct: 202 -----------------------------FLIL-----------ASDGLWDVLSDQEVVD 221
Query: 251 FVRERIGKQEKLIDICEELFDKCLAPDS 278
VR + ++ E+L D+ +A S
Sbjct: 222 IVRSEL-SDGSPMEAAEKLVDEAIAYGS 248
>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic
domain; The protein architecture and deduced catalytic
mechanism of PP2C phosphatases are similar to the PP1,
PP2A, PP2B family of protein Ser/Thr phosphatases, with
which PP2C shares no sequence similarity.
Length = 254
Score = 122 bits (309), Expect = 3e-33
Identities = 72/248 (29%), Positives = 101/248 (40%), Gaps = 79/248 (31%)
Query: 54 EDIQKRMKEALDHKDVPGMDSGCTAVVVLFVDNEVYIANAGDSRAVLCRDSKAQDLSEDH 113
+ + E + SG TAVV L N++Y+AN GD
Sbjct: 80 LRADEEILEEAQDEPDDA-RSGTTAVVALIRGNKLYVANVGD------------------ 120
Query: 114 KPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSGTAH-LSKRK 172
SR V L R +G A L+K
Sbjct: 121 --------SRAV-----------------LCR-----------------NGEAVQLTK-- 136
Query: 173 LLDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPA-----YFLALNNSR 227
DHKP +E E+ RI KAGG V+ GRV G L ++RALG P + +
Sbjct: 137 --DHKPVNEEERERIEKAGGRVSN-GRVPGVLAVTRALGDFDLKPGVSAEPDVTVVKLTE 193
Query: 228 TDEFIVSACDGIWNSLSSQEVVDFVRERIGKQEKLIDICEELFDKCLAPDSLGDGTGCDN 287
D+F++ A DG+W+ LS+QE VD VR + +E L + +EL D L S DN
Sbjct: 194 DDDFLILASDGLWDVLSNQEAVDIVRSEL-AKEDLQEAAQELVDLALRRGS------HDN 246
Query: 288 MTCVLVKI 295
+T V+V++
Sbjct: 247 ITVVVVRL 254
Score = 95.9 bits (239), Expect = 4e-23
Identities = 45/134 (33%), Positives = 60/134 (44%), Gaps = 41/134 (30%)
Query: 15 EDIQKRMKEALDHKDVPGMDSGCTAVVVLFVDNEVSLSREDIQKRMKEALDHKDVPGMDS 74
+ + E + SG TAV
Sbjct: 80 LRADEEILEEAQDEPDDA-RSGTTAV---------------------------------- 104
Query: 75 GCTAVVVLFVDNEVYIANAGDSRAVLCRDSKAQDLSEDHKPEDEAEKSRIVKAGGEVTPC 134
V L N++Y+AN GDSRAVLCR+ +A L++DHKP +E E+ RI KAGG V+
Sbjct: 105 -----VALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSN- 158
Query: 135 GRVNGGLNLSRALG 148
GRV G L ++RALG
Sbjct: 159 GRVPGVLAVTRALG 172
>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C,
catalytic domain. The protein architecture and deduced
catalytic mechanism of PP2C phosphatases are similar to
the PP1, PP2A, PP2B family of protein Ser/Thr
phosphatases, with which PP2C shares no sequence
similarity.
Length = 252
Score = 107 bits (268), Expect = 3e-27
Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 6/118 (5%)
Query: 42 VLFVDNEVSLSREDIQKRMKEA---LDHK--DVPGMDSGCTAVVVLFVDNEVYIANAGDS 96
+ + ED+++ +++A D + + SG TAVV L N++Y+AN GDS
Sbjct: 63 LAEELIKEKDELEDVEEALRKAFLSTDEEILEELEALSGSTAVVALISGNKLYVANVGDS 122
Query: 97 RAVLCRDSKAQDLSEDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSP 154
RAVLCR+ KA L+EDHKP +E E++RI AGG V GRVNG L LSRA+G P
Sbjct: 123 RAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVIN-GRVNGVLALSRAIGDFFLKP 179
Score = 103 bits (260), Expect = 4e-26
Identities = 49/124 (39%), Positives = 67/124 (54%), Gaps = 14/124 (11%)
Query: 175 DHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPA-----YFLALNNSRTD 229
DHKP +E E++RI AGG V GRVNG L LSRA+G P + + D
Sbjct: 138 DHKPSNEDERARIEAAGGFVIN-GRVNGVLALSRAIGDFFLKPYVSAEPDVTVVELTEKD 196
Query: 230 EFIVSACDGIWNSLSSQEVVDFVRERIGKQEKLIDICEELFDKCLAPDSLGDGTGCDNMT 289
+F++ A DG+W+ LS+QEVVD VR+ + K + + L D LA DN+T
Sbjct: 197 DFLILASDGLWDVLSNQEVVDIVRKHLSKD--PKEAAKRLIDLALAR------GSKDNIT 248
Query: 290 CVLV 293
V+V
Sbjct: 249 VVVV 252
>gnl|CDD|215603 PLN03145, PLN03145, Protein phosphatase 2c; Provisional.
Length = 365
Score = 91.1 bits (226), Expect = 1e-20
Identities = 69/225 (30%), Positives = 93/225 (41%), Gaps = 60/225 (26%)
Query: 74 SGCTAVVVLFVDNEVYIANAGDSRAVLCRDSKAQDLSEDHKPEDEAEKSRIVKAGGEVTP 133
SG TA+ L V + +ANAGD RAVLCR KA ++S DHKP E+ RI +GG V
Sbjct: 166 SGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGGYVYD 225
Query: 134 CGRVNGGLNLSRALGKSRFSPAYFLALNNSGTAHLSKRKLLDHKP-EDEAEKSRIVKAGG 192
G +NG LN++RAL G H+ K D P E E
Sbjct: 226 -GYLNGQLNVARAL----------------GDWHMEGMKGSDGGPLSAEPE--------- 259
Query: 193 EVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSRTDEFIVSACDGIWNSLSSQEVVDFV 252
+ + DEF++ CDGIW+ SQ VDF
Sbjct: 260 ---------------------------LMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFA 292
Query: 253 RERIGKQEKLIDICEELFDKCLAPDSLGDGTGCDNMTCVLVKIEP 297
R R+ + + +EL D+ L S DN+ V+V +
Sbjct: 293 RRRLQEHNDPVMCSKELVDEALKRKS------GDNLAVVVVCFQS 331
>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal
transduction mechanisms].
Length = 262
Score = 78.6 bits (194), Expect = 7e-17
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Query: 61 KEALDHKDVPGMDSGCTAVVVLFVDNEVYIANAGDSRAVLCRDSKAQDLSEDHKPEDEAE 120
+E ++DV GM G T V++L N++Y+AN GDSRA L RD + + L+EDH + E
Sbjct: 97 EEGQLNEDVRGM--GTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLE 154
Query: 121 KSRIVKAGGEVTPCGRVNGGLN-LSRALGKSRF 152
+ I+ R + N L+RALG
Sbjct: 155 QRGIITPEE-----ARSHPRRNALTRALGDFDL 182
Score = 71.2 bits (175), Expect = 3e-14
Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 25/146 (17%)
Query: 153 SPAYFLALNNSGTAH-LSKRKLLDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLN-LSRAL 210
S AY L G L++ DH + E+ I+ R + N L+RAL
Sbjct: 130 SRAYLL---RDGELKQLTE----DHSLVNRLEQRGIITPEE-----ARSHPRRNALTRAL 177
Query: 211 GKSRFSPAYFLALNNSRTDEFIVSACDGIWNSLSSQEVVDFVRERIGKQEKLIDICEELF 270
G + +F++ DG+W+ +S E+VD ++ QE ++L
Sbjct: 178 GDFDL-LEPDITELELEPGDFLLLCSDGLWDVVSDDEIVDILKNSETPQEA----ADKLI 232
Query: 271 DKCLAPDSLGDGTGCDNMTCVLVKIE 296
+ L +G G DN+T VLV++
Sbjct: 233 ELAL------EGGGPDNITVVLVRLN 252
>gnl|CDD|240318 PTZ00224, PTZ00224, protein phosphatase 2C; Provisional.
Length = 381
Score = 71.0 bits (174), Expect = 1e-13
Identities = 39/101 (38%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 57 QKRMKEALDHKDVPGMDSGCTA-----VVVLFVDNEVYIANAGDSRAVLCRDSKAQDLSE 111
+RM+E D MDSG V+ D + + N GDSR ++CRD K +E
Sbjct: 83 DERMEELCLEIDEEWMDSGREGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATE 142
Query: 112 DHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRF 152
DHKP + E+ RI GG V RV+G L +SRA G F
Sbjct: 143 DHKPNNPGERQRIEACGGRVVS-NRVDGDLAVSRAFGDRSF 182
Score = 57.1 bits (138), Expect = 4e-09
Identities = 43/142 (30%), Positives = 76/142 (53%), Gaps = 29/142 (20%)
Query: 175 DHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRF----SPAYF----LALNN- 225
DHKP + E+ RI GG V RV+G L +SRA G F + Y +A+ +
Sbjct: 143 DHKPNNPGERQRIEACGGRVVS-NRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDV 201
Query: 226 ----SRTDEFIVSACDGIWN-SLSSQEVVDFVRERIGKQEKLIDI----CEELFDKCLAP 276
++++FI+ ACDG++ + S++EVV FV+E++ + L + C+E +
Sbjct: 202 THLTCQSNDFIILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAIRR---- 257
Query: 277 DSLGDGTGCDNMTCVLVKIEPG 298
G+ DN++C++V+++ G
Sbjct: 258 -----GSK-DNISCLIVQLKDG 273
>gnl|CDD|222308 pfam13672, PP2C_2, Protein phosphatase 2C. Protein phosphatase 2C
is a Mn++ or Mg++ dependent protein serine/threonine
phosphatase.
Length = 211
Score = 33.8 bits (78), Expect = 0.078
Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 13/91 (14%)
Query: 37 CTAVVVLFVDNEVSLSREDIQKRMKEALDH------------KDVPGMDSGCTAVVVLFV 84
A V + S + + ++ L+ + + D T ++ +
Sbjct: 47 VEAAVEALRELLDSGELPEDEALLRAILNAILAILKAASAAAQQLEPRDYATTLLLAVIT 106
Query: 85 DNEVYIANAGDSRAVLC-RDSKAQDLSEDHK 114
+ GD V+ D + Q LSE
Sbjct: 107 PGGIVFFQIGDGAIVVRDGDGELQLLSEPDS 137
>gnl|CDD|214624 smart00331, PP2C_SIG, Sigma factor PP2C-like phosphatases.
Length = 193
Score = 32.7 bits (75), Expect = 0.18
Identities = 13/52 (25%), Positives = 19/52 (36%)
Query: 54 EDIQKRMKEALDHKDVPGMDSGCTAVVVLFVDNEVYIANAGDSRAVLCRDSK 105
I +R+ A+ GM + + F + ANAG S L R
Sbjct: 67 SQILERLNRAIYENGEDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADG 118
>gnl|CDD|191110 pfam04844, Ovate, Transcriptional repressor, ovate. This is a
family of transcriptional repressors. In plants, these
proteins are important regulators of growth and
development.
Length = 60
Score = 30.3 bits (69), Expect = 0.20
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 218 AYFLALNNSRTDEFIVSACDGIWNSLSSQ 246
A +L+LN IV+A +W +L +
Sbjct: 32 ACYLSLNAKEHHRAIVAAFADVWVALFAP 60
>gnl|CDD|234620 PRK00081, coaE, dephospho-CoA kinase; Reviewed.
Length = 194
Score = 32.4 bits (75), Expect = 0.21
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 18/66 (27%)
Query: 14 REDIQKRMKEALDHK----DVP-----GMDSGCTAVVVLFVDNEV---------SLSRED 55
RE+I ++++EA D+P G++ V+V+ E LS E+
Sbjct: 93 REEILEQLQEAESSPYVVLDIPLLFENGLEKLVDRVLVVDAPPETQLERLMARDGLSEEE 152
Query: 56 IQKRMK 61
+ +
Sbjct: 153 AEAIIA 158
>gnl|CDD|238980 cd02022, DPCK, Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24)
catalyzes the phosphorylation of dephosphocoenzyme A
(dCoA) to yield CoA, which is the final step in CoA
biosynthesis.
Length = 179
Score = 32.1 bits (74), Expect = 0.23
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 18/66 (27%)
Query: 14 REDIQKRMKEALDHK----DVP-----GMDSGCTAVVVLFVDNEV---------SLSRED 55
R++I++++ EA K D+P G++ V+V+ E+ LS E+
Sbjct: 90 RKEIEEQLAEARKEKVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIERLMKRDGLSEEE 149
Query: 56 IQKRMK 61
+ R+
Sbjct: 150 AEARIA 155
>gnl|CDD|199826 cd10985, MH2_SMAD_2_3, C-terminal Mad Homology 2 (MH2) domain in
SMAD2 and SMAD3. The MH2 domain is located at the
C-terminus of the SMAD (small mothers against
decapentaplegic) family of proteins, which are signal
transducers and transcriptional modulators that mediate
multiple signaling pathways. The MH2 domain is
responsible for type I receptor interaction,
phosphorylation-triggered homo- and
hetero-oligomerization, and transactivation. It is
negatively regulated by the N-terminal MH1 domain. SMAD2
and SMAD3 are receptor regulated SMADs (R-SMADs). SMAD2
regulates multiple cellular processes, such as cell
proliferation, apoptosis and differentiation, while
SMAD3 modulates signals of activin and TGF-beta.
Length = 191
Score = 31.4 bits (71), Expect = 0.37
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 226 SRTDEFIVSACDGIWNSLSSQEVVDFVRERIGKQEKLIDICEELFDKCLAPDSLG-DGTG 284
S ++ F C G+ ++++ V+ R IGK +L I E+F +CL+ ++
Sbjct: 41 SNSERF----CLGLLSNVNRNPQVELTRRHIGKGVRLYYIGGEVFAECLSDSAIFVQSPN 96
Query: 285 CDNM----TCVLVKIEPG 298
C+ + KI PG
Sbjct: 97 CNQRYGWHPATVCKIPPG 114
>gnl|CDD|233734 TIGR02120, GspF, type II secretion system protein F. This membrane
protein is a component of the terminal branch complex of
the general secretion pathway (GSP), also known as
the"Type II" secretion pathway. The GSP transports
proteins (generally virulence-associated cell wall
hydrolases) across the outer membrase of the bacterial
cell. Transport across the inner membrane is often, but
not exclusively handled by the Sec system. This model
was constructed from the broader subfamily model,
pfam00482 which includes components of pilin complexes
(PilC) as well as other related genes. GspF is nearly
always gene clustered with other GSP subunits. Some
genes from Xylella and Xanthomonas strains score below
the trusted cutoff due to excessive divergence from the
family such that a sequence from Deinococcus which does
not appear to be GspF scores higher [Protein fate,
Protein and peptide secretion and trafficking].
Length = 399
Score = 31.9 bits (73), Expect = 0.52
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 116 EDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGK--SRFSPAYFLALNNSGTA--HLSK- 170
++AEK R+ + RV G +L+ AL + F P Y AL +G A L
Sbjct: 88 LEQAEKPRLKSVLAAIR--SRVLEGKSLADALAQHPRDFPPLY-RALVAAGEASGALDAV 144
Query: 171 -RKLLDHKPEDEAEKSRIVKA 190
+L D+ E +A +S+I A
Sbjct: 145 LERLADYLEERQALRSKITTA 165
Score = 29.2 bits (66), Expect = 2.9
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 179 EDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGK--SRFSPAY 219
++AEK R+ + RV G +L+ AL + F P Y
Sbjct: 88 LEQAEKPRLKSVLAAIR--SRVLEGKSLADALAQHPRDFPPLY 128
>gnl|CDD|238940 cd01982, Chlide_reductase_Z, Chlide_reductase_Z : Z subunit of
chlorophyllide (chlide) reductase (BchZ). Chlide
reductase participates in photosynthetic pigment
synthesis playing a role in the conversion of
chlorophylls(Chl) into bacteriochlorophylls (BChl).
Chlide reductase catalyzes the reduction of the B-ring
of the tetrapyrolle. Chlide reductase is a three subunit
enzyme (subunits are designated BchX, BchY and BchZ).
The similarity between these three subunits and the
subunits for nitrogenase suggests that BchX serves as an
electron donor for the BchY-BchY catalytic subunits.
Length = 412
Score = 30.2 bits (68), Expect = 1.7
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 114 KPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLA 159
K DE + I + + GR+N + L+ L K RF PA+ A
Sbjct: 321 KDNDEPVRIEIRQKQPQFLF-GRMNDKIYLAETLAKHRFIPAFIPA 365
Score = 30.2 bits (68), Expect = 1.7
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 177 KPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLA 222
K DE + I + + GR+N + L+ L K RF PA+ A
Sbjct: 321 KDNDEPVRIEIRQKQPQFLF-GRMNDKIYLAETLAKHRFIPAFIPA 365
>gnl|CDD|237756 PRK14559, PRK14559, putative protein serine/threonine phosphatase;
Provisional.
Length = 645
Score = 29.6 bits (67), Expect = 2.9
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 75 GCTAVVVLFVDNEVYIANAGDSRAV-LCRDSKAQDLSEDH 113
G T V+ L D +V +A+ GDSR + R + L+ DH
Sbjct: 485 GTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDH 524
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 29.3 bits (67), Expect = 3.8
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 9 SGGLSREDIQKRMKEALDHKD 29
S GLS E+I++ +K+A + +
Sbjct: 497 SSGLSDEEIERMVKDAEANAE 517
>gnl|CDD|130631 TIGR01568, A_thal_3678, uncharacterized plant-specific domain
TIGR01568. This model describes an uncharacterized
domain of about 70 residues found exclusively in plants,
generally toward the C-terminus of proteins of 200 to
350 amino acids in length. At least 14 such proteins are
found in Arabidopsis thaliana. Other regions of these
proteins tend to consist largely of low-complexity
sequence.
Length = 66
Score = 26.6 bits (59), Expect = 4.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 220 FLALNNSRTDEFIVSACDGIWNSLSS 245
+L LN ++ FIV A I ++L S
Sbjct: 41 YLDLNPKKSHRFIVRAFVDILSALLS 66
>gnl|CDD|191696 pfam07168, Ureide_permease, Ureide permease. Heterocyclic nitrogen
compounds may serve as nitrogen sources or nitrogen
transport compounds in plants that are not able to fix
nitrogen. This family represents ureide permease, a
transporter of a wide spectrum of oxo derivatives of
heterocyclic nitrogen compounds, including allantoin,
uric acid and xanthine; it has 10 putative transmembrane
domains with a large cytosolic central domain containing
a 'Walker A' motif. Ureide permease is likely to
transport other purine degradation products when
nitrogen sources are low. Transport is dependent on
glucose and a proton gradient. The family is found in
bacteria, plants and yeast.
Length = 336
Score = 28.7 bits (64), Expect = 4.3
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 32/119 (26%)
Query: 70 PGMDSGCTAVVVLFVDNEVYIANAGDSRAVLCRDSKAQDLS----------------EDH 113
PG+ C + V F+ + V+ +NA D++ L Q E+
Sbjct: 132 PGV--ACFLIAV-FLGSAVHSSNAADNKEKLNAFENYQSEFSISSLELMSRMNSEDLENG 188
Query: 114 KPED----------EAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNN 162
+ +D E EK R +K G+ T G G+ L + S FSPA+ LA N+
Sbjct: 189 EADDAKAGTAEFLVELEKRRAIKVFGKSTWIGL---GITLFAGICFSLFSPAFNLATND 244
Score = 28.3 bits (63), Expect = 6.9
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 181 EAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNN 225
E EK R +K G+ T G G+ L + S FSPA+ LA N+
Sbjct: 203 ELEKRRAIKVFGKSTWIGL---GITLFAGICFSLFSPAFNLATND 244
>gnl|CDD|238327 cd00584, Prefoldin_alpha, Prefoldin alpha subunit; Prefoldin is a
hexameric molecular chaperone complex, found in both
eukaryotes and archaea, that binds and stabilizes newly
synthesized polypeptides allowing them to fold
correctly. The complex contains two alpha and four beta
subunits, the two subunits being evolutionarily related.
In archaea, there is usually only one gene for each
subunit while in eukaryotes there two or more paralogous
genes encoding each subunit adding heterogeneity to the
structure of the hexamer. The structure of the complex
consists of a double beta barrel assembly with six
protruding coiled-coils.
Length = 129
Score = 27.2 bits (61), Expect = 7.1
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 228 TDEFIVSACDGIWNSLSSQEVVDFVRERIGKQEKLID 264
TD+ +V G + +E ++F+ ++I + K I+
Sbjct: 68 TDKVLVDLGTGYYVEKDLEEAIEFLDKKIEELTKQIE 104
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar
proteins. Bile acid-Coenzyme A ligase catalyzes the
formation of bile acid-CoA conjugates in a two-step
reaction: the formation of a bile acid-AMP molecule as
an intermediate, followed by the formation of a bile
acid-CoA. This ligase requires a bile acid with a free
carboxyl group, ATP, Mg2+, and CoA for synthesis of the
final bile acid-CoA conjugate. The bile acid-CoA
ligation is believed to be the initial step in the bile
acid 7alpha-dehydroxylation pathway in the intestinal
bacterium Eubacterium sp.
Length = 342
Score = 27.8 bits (63), Expect = 8.1
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 232 IVSACDGIWNSLSSQEVVDFVRERIG--KQEKLIDICEEL 269
+V G +L ++E++ F RER+ K K ++ +EL
Sbjct: 291 VVVLRPGA--TLDAEELIAFCRERLAGYKVPKSVEFVDEL 328
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 27.8 bits (62), Expect = 9.1
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 11 GLSREDIQKRMKEALDHKDVPGMD 34
G+ +E+ ++R+KEAL+ D+ G +
Sbjct: 107 GVPKEERKQRVKEALELVDLAGFE 130
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.132 0.374
Gapped
Lambda K H
0.267 0.0697 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,707,663
Number of extensions: 1602253
Number of successful extensions: 1269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1250
Number of HSP's successfully gapped: 47
Length of query: 336
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 239
Effective length of database: 6,635,264
Effective search space: 1585828096
Effective search space used: 1585828096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (26.6 bits)