RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7329
(336 letters)
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI,
protei structure initiative, NEW YORK SGX research
center for STRU genomics; 1.70A {Anopheles gambiae}
Length = 304
Score = 209 bits (534), Expect = 4e-66
Identities = 101/244 (41%), Positives = 132/244 (54%), Gaps = 50/244 (20%)
Query: 52 SREDIQKRMKEALDHKDVPGMDSGCTAVVVLFVDNEVYIANAGDSRAVLCRDSKAQDLSE 111
E+++ ++ PG DSGCTAVV L ++Y+ANAGDSR V+CR+ KA ++S
Sbjct: 108 VIEELKVLSGDSAGSDAEPGKDSGCTAVVALLHGKDLYVANAGDSRCVVCRNGKALEMSF 167
Query: 112 DHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSGTAHLSKR 171
DHKPED E RI KAGG VT GRVNGGLNLSRA+G +
Sbjct: 168 DHKPEDTVEYQRIEKAGGRVTLDGRVNGGLNLSRAIGDHGY------------------- 208
Query: 172 KLLDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSRTDEF 231
K+ P +E +++ A ++ DEF
Sbjct: 209 KMNKSLPAEE----QMISALPDIEKITV--------------------------GPEDEF 238
Query: 232 IVSACDGIWNSLSSQEVVDFVRERIGKQEK-LIDICEELFDKCLAPDSLGDGTGCDNMTC 290
+V ACDGIWN ++S++VV FV+ERI K L ICEELFD CLAP + GDGTGCDNMT
Sbjct: 239 MVLACDGIWNFMTSEQVVQFVQERINKPGMKLSKICEELFDHCLAPHTRGDGTGCDNMTA 298
Query: 291 VLVK 294
++V+
Sbjct: 299 IIVQ 302
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin,
hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1
d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Length = 382
Score = 200 bits (511), Expect = 9e-62
Identities = 79/301 (26%), Positives = 114/301 (37%), Gaps = 65/301 (21%)
Query: 44 FVDNEVSLSREDIQKRMKEA----------LDHKDVPGMDSGCTAVVVLFVDNEVYIANA 93
F + + S E+++ ++ + K SG TAV VL Y N
Sbjct: 85 FKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINC 144
Query: 94 GDSRAVLCRDSKAQDLSEDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFS 153
GDSR +LCR+ K ++DHKP + EK RI AGG V RVNG L +SRALG +
Sbjct: 145 GDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVM-IQRVNGSLAVSRALGDFDY- 202
Query: 154 PAYFLALNNSGTAHLSKRKLLDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKS 213
K + K E ++V EV R
Sbjct: 203 ------------------KCVHGKGPTE----QLVSPEPEVHDIER-------------- 226
Query: 214 RFSPAYFLALNNSRTDEFIVSACDGIWNSLSSQEVVDFVRERIGKQEKLIDICEELFDKC 273
+ D+FI+ ACDGIW+ + ++E+ DFVR R+ + L +C E+ D C
Sbjct: 227 -----------SEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTC 275
Query: 274 LAPDSLGDGTGCDNMTCVLVKIEPGRLSRDNAAPISVASAKRSREDTEAAANPSKKSKTE 333
L S DNM+ +L+ A K E + +
Sbjct: 276 LYKGS------RDNMSVILICFPNAPKVSPEAVKKEAELDKYLECRVEEIIKKQGEGVPD 329
Query: 334 E 334
Sbjct: 330 L 330
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase,
PSI-2, protein structure initiative; 1.82A {Homo
sapiens}
Length = 307
Score = 197 bits (502), Expect = 3e-61
Identities = 77/276 (27%), Positives = 115/276 (41%), Gaps = 57/276 (20%)
Query: 25 LDHKDVPGMDSGCTAVVVLFVDNEVSLSREDIQKRMKEALDHKDVPGMD-SGCTAVVVLF 83
++D +A+ + + + + ++ GMD SG TAV V+
Sbjct: 82 TTNEDFRAAGKSGSALELSVENVKNGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMI 141
Query: 84 VDNEVYIANAGDSRAVLCRDSKAQDLSEDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNL 143
+Y N GDSRAVL R+ + ++DHKP + EK RI AGG V RVNG L +
Sbjct: 142 SPKHIYFINCGDSRAVLYRNGQVCFSTQDHKPCNPREKERIQNAGGSVM-IQRVNGSLAV 200
Query: 144 SRALGKSRFSPAYFLALNNSGTAHLSKRKLLDHKPEDEAEKSRIVKAGGEVTPCGRVNGG 203
SRALG + K +D K E ++V EV R
Sbjct: 201 SRALGDYDY-------------------KCVDGKGPTE----QLVSPEPEVYEILR---- 233
Query: 204 LNLSRALGKSRFSPAYFLALNNSRTDEFIVSACDGIWNSLSSQEVVDFVRERIGKQEKLI 263
+ DEFI+ ACDGIW+ +S++E+ ++V+ R+ + L
Sbjct: 234 ----------------------AEEDEFIILACDGIWDVMSNEELCEYVKSRLEVSDDLE 271
Query: 264 DICEELFDKCLAPDSLGDGTGCDNMTCVLVKIEPGR 299
++C + D CL S DNM+ VLV
Sbjct: 272 NVCNWVVDTCLHKGS------RDNMSIVLVCFSNEG 301
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics,
protein structure initiative; 2.04A {Toxoplasma gondii}
Length = 324
Score = 180 bits (458), Expect = 2e-54
Identities = 41/245 (16%), Positives = 78/245 (31%), Gaps = 61/245 (24%)
Query: 65 DHKDVPGMDSGCTAVVVLFVDNEVYIANAGDSRAVLCRDS----KAQDLSEDHKPEDEAE 120
+ + + T+V + V + + GDSR + ++ + L+ DHKP+ E
Sbjct: 127 MCEQLNKDYASSTSVTAVLAKGFVAVGHLGDSRIAMGVETPNGLNCEFLTVDHKPDMPHE 186
Query: 121 KSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSGTAHLSKRKLLDHKPED 180
K RI++ GG V + R G F +
Sbjct: 187 KLRIMRNGGSVE-YLHNHNNKPFIRG-GDFSFRKSR------------------------ 220
Query: 181 EAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPA--------YFLALNNSRTDEFI 232
G L SRA G + + + +
Sbjct: 221 -----------------GEQPMQLQYSRAFGGKDLKMYGLSNQPDVRVVRV--TPQHRVM 261
Query: 233 VSACDGIWNSLSSQEVVDFVRERIGKQEKLIDICEELFDKCLAPDSLGDGTGCDNMTCVL 292
+ A DG+W+ +S+ + V+ + + + + L + LA + DN+T +
Sbjct: 262 ILATDGLWDVMSAAQAVEIAMQARQEGR---NPAQALVEMTLAEQQSRNQ-SADNITAMT 317
Query: 293 VKIEP 297
V +
Sbjct: 318 VFFKK 322
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting
protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles
gambiae}
Length = 358
Score = 157 bits (397), Expect = 3e-45
Identities = 43/303 (14%), Positives = 89/303 (29%), Gaps = 72/303 (23%)
Query: 19 KRMKEALDHKDVPGMDSGCTAVVVLFVDNEVSLSREDIQKRMKEALDHKDVPGMDSGCTA 78
+++ P + + + L D + + + LD + G +A
Sbjct: 99 MSVEKGYFDSINPHVATKTAIQLHLSADGMNQYEISQQFENVLQKLD-SLNNALSVGSSA 157
Query: 79 VVVLFVDNEVYIANAGDSRAVLCRDSK-----AQDLSEDHKPEDEAEKSRIVKAGGEVTP 133
V+ L + +Y+ N G+ RA+LC+ + LS DH + E +R+ + G
Sbjct: 158 VLALIHRSHLYLGNIGNCRALLCKTDEHDTLTVTQLSVDHNLLNAEEAARLFRLGLMAQ- 216
Query: 134 CGRVNGGLNLSRALGKSRFSPAYFLALNNSGTAHLSKRKLLDHKPEDEAEKSRIVKAGGE 193
L +R +G Y K + AE V E
Sbjct: 217 -NFEGVPLYSTRCIGNYLGKAGY---------------KDCNFLSSATAE---PVIFEPE 257
Query: 194 VTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSRTDEFIVSACDGIWNSL---------- 243
+ ++ + F+V G+ +L
Sbjct: 258 IVGGIQI-------------------------TPACRFLVLMSSGLCRALHEIFPGDAST 292
Query: 244 SSQEVVDFVRERIGKQEKLIDICEELFDK--------CLAPDSLGDGTGC---DNMTCVL 292
++E+V + E Q L + + + + + D++T ++
Sbjct: 293 GNRELVRMISEEFQNQSTLGGVAQSVVHRIVQAHHDTYMQLVEEHRSVTFNSRDDVTLLI 352
Query: 293 VKI 295
Sbjct: 353 RNF 355
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting
protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding
protein, protein binding; 2.25A {Homo sapiens} PDB:
2pom_A 2pop_A
Length = 401
Score = 157 bits (399), Expect = 4e-45
Identities = 59/358 (16%), Positives = 121/358 (33%), Gaps = 92/358 (25%)
Query: 13 SREDIQKRMKEALDHKDVPGMDSGCTAVVVLFVDNEVSLSREDIQKRMKEALDHKDV--- 69
+ D+++ + +A D ++ L ++ + +Q ++ E + +
Sbjct: 98 AEADVRRVLLQAFDV-----VERSF-----LESIDDALAEKASLQSQLPEGVPQHQLPPQ 147
Query: 70 ------------PGMDSGCTAVVVLFVDNEVYIANAGDSRAVLCRDS----KAQDLSEDH 113
+ G AVV + ++N++Y+AN G +RA+LC+ + + L+ DH
Sbjct: 148 YQKILERLKTLEREISGGAMAVVAVLLNNKLYVANVGTNRALLCKSTVDGLQVTQLNVDH 207
Query: 114 KPEDEAEKSRIVKAGGEVT--PCGRVNGGLNLSRALGKSRFSPAYFLALNNSGTAHLSKR 171
E+E E R+ + G + + G +R +G + K
Sbjct: 208 TTENEDELFRLSQLGLDAGKIKQVGIICGQESTRRIG--------DYKV---------KY 250
Query: 172 KLLDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSRTDEF 231
D A KS+ + A E+ ++G F
Sbjct: 251 GYTDIDLLSAA-KSKPIIAEPEIHGAQPLDG-------------------------VTGF 284
Query: 232 IVSACDGIWNSLSS--------QEVVDFVRERIGKQEKLIDICEELFDKCLAPDSLGDGT 283
+V +G++ +L + QE+ + KQ L + + + D+ S +
Sbjct: 285 LVLMSEGLYKALEAAHGPGQANQEIAAMIDTEFAKQTSLDAVAQAVVDRVKRIHSDTFAS 344
Query: 284 GC---------DNMTCVLVKIEPGRLSRDNAAPISVASAKRSREDTEAAANPSKKSKT 332
G ++MT ++ P S A A R + S +S +
Sbjct: 345 GGERARFCPRHEDMTLLVRNFGYPLGEMSQPTP-SPAPAAGGRVYPVSVPYSSAQSTS 401
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium,
sulfate structural genomics, PSI-2, protein structure
initiative; 1.90A {Toxoplasma gondii}
Length = 364
Score = 147 bits (372), Expect = 1e-41
Identities = 71/337 (21%), Positives = 108/337 (32%), Gaps = 84/337 (24%)
Query: 15 EDIQKRMKEALDHKDVPGMDSGCTAVVVLF-----VDNEVSLSREDIQKRMKEALDHKDV 69
+ + + K P +G T ++V E + RE + + +E +
Sbjct: 81 KKACLSLDAEIIRKLGPKHVAGSTGIIVAIERLSAPVVENVVGREIVPRAHEETFVPLEK 140
Query: 70 PGMD---------SGCTAVVVLFVDNE-------VYIANAGDSRAVLCR-DSKAQDLSED 112
+ G V V N GDSRA L D LS+D
Sbjct: 141 LIQEEEEAEHPELVGRYPRVPDVQQKTIPAGSFLVTAINIGDSRATLIHSDGGLTRLSKD 200
Query: 113 HKPEDEAEKSRIVKAGGEVT--PCGRVNGGLNLSRALGKSRFSPAYFLALNNSGTAHLSK 170
HKP E SRI KAGG V RV+G L LSRA G S F
Sbjct: 201 HKPNHPTEASRIEKAGGSVETFDVPRVDGVLALSRAFGDSDF------------------ 242
Query: 171 RKLLDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSRTDE 230
K+ + P +E V A +V + + L L
Sbjct: 243 -KMNPNLPPEEQ----KVIAVPDVR----------------QFYALSSDLLLL------- 274
Query: 231 FIVSACDGIWNSLS--SQEVVDFVRERIGKQEK-LIDICEELFDKCLAPDSLGDGTGCDN 287
ACDG++ V D + + + L ++ + D +S DN
Sbjct: 275 ----ACDGVYEPSGMDWAYVRDLTVAEMQRSKGDLEEVAARVMDYAYDMNS------QDN 324
Query: 288 MTCVLVKIEPGRLSRDNAAPISVASAKRSREDTEAAA 324
++ +LV + A V S + + + + A
Sbjct: 325 ISVMLVAFHNQEVEHPTAVY-KVVSGQVDKVEWDVAG 360
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain,
PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C
protein phosphatase; HET: A8S; 1.80A {Arabidopsis
thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B*
Length = 337
Score = 141 bits (356), Expect = 2e-39
Identities = 63/278 (22%), Positives = 98/278 (35%), Gaps = 88/278 (31%)
Query: 43 LFVDNEVSLSREDIQKRMKEALDHKDVPGMDSGCTAVVVLFVDNEVYIANAGDSRAVLCR 102
L VD E+ + + V G TAVV L + + ++N GD
Sbjct: 121 LTVDGEI-EGKIGRAVVGSSDKVLEAVASETVGSTAVVALVCSSHIVVSNCGD------- 172
Query: 103 DSKAQDLSEDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNN 162
SR V L R
Sbjct: 173 -------------------SRAV-----------------LFRG---------------- 180
Query: 163 SGTAH-LSKRKLLDHKPEDEAEKSRIVKAGGEVT--PCGRVNGGLNLSRALGKSRFSPA- 218
A LS DHKP+ E E +RI AGG+V RV G L +SR++G P
Sbjct: 181 -KEAMPLSV----DHKPDREDEYARIENAGGKVIQWQGARVFGVLAMSRSIGDRYLKPYV 235
Query: 219 ----YFLALNNSRTDEFIVSACDGIWNSLSSQEVVDFVRERI-------------GKQEK 261
+ SR DE ++ A DG+W+ +++QEV + R RI + +
Sbjct: 236 IPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKG 295
Query: 262 LIDICEELFDKCLAPDSLGDGTGCDNMTCVLVKIEPGR 299
+ C+ L+ +L G DN++ +++ ++ R
Sbjct: 296 IDPACQAA-ADYLSMLALQKG-SKDNISIIVIDLKAQR 331
Score = 106 bits (267), Expect = 1e-26
Identities = 38/123 (30%), Positives = 50/123 (40%), Gaps = 41/123 (33%)
Query: 28 KDVPGMDSGCTAVVVLFVDNEVSLSREDIQKRMKEALDHKDVPGMDSGCTAVVVLFVDNE 87
+ V G TA VV L +
Sbjct: 144 EAVASETVGSTA---------------------------------------VVALVCSSH 164
Query: 88 VYIANAGDSRAVLCRDSKAQDLSEDHKPEDEAEKSRIVKAGGEVT--PCGRVNGGLNLSR 145
+ ++N GDSRAVL R +A LS DHKP+ E E +RI AGG+V RV G L +SR
Sbjct: 165 IVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQGARVFGVLAMSR 224
Query: 146 ALG 148
++G
Sbjct: 225 SIG 227
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2,
protein structure initiative, NEW YORK SGX research
center for structural genomics; 2.25A {Homo sapiens}
Length = 274
Score = 137 bits (347), Expect = 1e-38
Identities = 56/249 (22%), Positives = 83/249 (33%), Gaps = 89/249 (35%)
Query: 60 MKEALDHKDVPGMDSGCTAVVVLFVDN-EVYIANAGDSRAVLCRDSKAQDLSEDHKPEDE 118
A D + SG TA V L D E+ +A+ GD
Sbjct: 87 SSHARLSADATLLTSGTTATVALLRDGIELVVASVGD----------------------- 123
Query: 119 AEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSGTAH-LSKRKLLDHK 177
SR + L R G L+ DH
Sbjct: 124 ---SRAI-----------------LCRK-----------------GKPMKLTI----DHT 142
Query: 178 PEDEAEKSRIVKAGGEVT----PCGRVNGGLNLSRALGKSRFSPA--------YFLALNN 225
PE + EK RI K GG V VNG L ++R++G + + L++
Sbjct: 143 PERKDEKERIKKCGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKTSGVIAEPETKRIKLHH 202
Query: 226 SRTDEFIVSACDGIWNSLSSQEVVDFVRERIGKQEKLIDICEELFDKCLAPDSLGDGTGC 285
+ D F+V DGI ++SQE+ DFV + E + ++ + +
Sbjct: 203 A-DDSFLVLTTDGINFMVNSQEICDFVNQCHDPNE----AAHAVTEQAIQYGT------E 251
Query: 286 DNMTCVLVK 294
DN T V+V
Sbjct: 252 DNSTAVVVP 260
Score = 111 bits (280), Expect = 6e-29
Identities = 39/132 (29%), Positives = 50/132 (37%), Gaps = 42/132 (31%)
Query: 21 MKEALDHKDVPGMDSGCTAVVVLFVDNEVSLSREDIQKRMKEALDHKDVPGMDSGCTAVV 80
A D + SG TA V L D
Sbjct: 87 SSHARLSADATLLTSGTTATVALLRD---------------------------------- 112
Query: 81 VLFVDNEVYIANAGDSRAVLCRDSKAQDLSEDHKPEDEAEKSRIVKAGGEVT----PCGR 136
E+ +A+ GDSRA+LCR K L+ DH PE + EK RI K GG V
Sbjct: 113 ----GIELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKKCGGFVAWNSLGQPH 168
Query: 137 VNGGLNLSRALG 148
VNG L ++R++G
Sbjct: 169 VNGRLAMTRSIG 180
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate
dehydrogenase phosphatase 1, catalytic subunit, PDP1C,
hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A
Length = 467
Score = 140 bits (354), Expect = 3e-38
Identities = 65/323 (20%), Positives = 103/323 (31%), Gaps = 60/323 (18%)
Query: 3 STVDFESGGLSREDIQKRMKEALDHKDVPGMDSGC-TAVVVLFVDNEVSLSREDIQKRMK 61
E+ L ++ +E +D D A++ F + +S E
Sbjct: 127 DYFSKEASKLYFNGLRTYWQELIDLNTGESADIDVKEALINAFKRLDNDISLEAQVGDPN 186
Query: 62 EALDHKDVPGMDSGCTAVVVLFVDNEVYIANAGDSRAVLCRDS-----KAQDLSEDHKPE 116
L++ + SG TA V ++++AN GDSRA+L A LS DH +
Sbjct: 187 SFLNYLVLRVAFSGATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTLSNDHNAQ 246
Query: 117 DEAEKSRIVK-----AGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSGTAHLSKR 171
+E E R+ V R+ G L RA G
Sbjct: 247 NERELQRLKLEHPKNEAKSVVKQDRLLGLLMPFRAFG----------------------- 283
Query: 172 KLLDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLA--------L 223
D K + + + V G ++ + + +P Y A L
Sbjct: 284 ---DVKFKWSIDLQKRVIESG-----PDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRL 335
Query: 224 NNSRTDEFIVSACDGIWNSLSSQEVVDFVRERIGKQEKLIDICEELFDKCLAPDSLGDGT 283
D+F+V A DG+W ++ Q+VV V E + I + L
Sbjct: 336 RPQ--DKFLVLATDGLWETMHRQDVVRIVGEYLTGMHHQQPIAVGGYKVTLGQMHGLLTE 393
Query: 284 GCDNMTCVLVKIEPGRLSRDNAA 306
M+ V NAA
Sbjct: 394 RRAKMSSVFE--------DQNAA 408
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling
pathway, cell membr hydrolase, magnesium, manganese,
metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis
thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B*
Length = 316
Score = 137 bits (346), Expect = 4e-38
Identities = 61/289 (21%), Positives = 97/289 (33%), Gaps = 106/289 (36%)
Query: 47 NEVSLSREDIQKRMKEALDHKD-----VPGMDSGCTAVVVLFVDNEVYIANAGDSRAVLC 101
++ E +K + + D V G T+VV + + +++AN GD
Sbjct: 90 SDGDTWLEKWKKALFNSFLRVDSEIESVAPETVGSTSVVAVVFPSHIFVANCGD------ 143
Query: 102 RDSKAQDLSEDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALN 161
SR V L R
Sbjct: 144 --------------------SRAV-----------------LCRG--------------- 151
Query: 162 NSGTAH-LSKRKLLDHKPEDEAEKSRIVKAGGEVT--PCGRVNGGLNLSRALGKSRFSPA 218
TA LS DHKP+ E E +RI AGG+V RV G L +SR++G P+
Sbjct: 152 --KTALPLSV----DHKPDREDEAARIEAAGGKVIQWNGARVFGVLAMSRSIGDRYLKPS 205
Query: 219 -----YFLALNNSRTDEFIVSACDGIWNSLSSQEVVDFVRERIGKQEKLI---------- 263
A+ + D+ ++ A DG+W+ ++ +E + R+RI K
Sbjct: 206 IIPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRILLWHKKNAVAGGASLLA 265
Query: 264 -------------DICEELFDKCLAPDSLGDGTGCDNMTCVLVKIEPGR 299
E L + S DN++ V+V ++P R
Sbjct: 266 DERRKEGKDPAAMSAAEYLSKLAIQRGS------KDNISVVVVDLKPRR 308
Score = 107 bits (270), Expect = 4e-27
Identities = 42/149 (28%), Positives = 57/149 (38%), Gaps = 46/149 (30%)
Query: 7 FESGGLSREDIQKRMKEALDHKD-----VPGMDSGCTAVVVLFVDNEVSLSREDIQKRMK 61
G E +K + + D V G T+V
Sbjct: 89 LSDGDTWLEKWKKALFNSFLRVDSEIESVAPETVGSTSV--------------------- 127
Query: 62 EALDHKDVPGMDSGCTAVVVLFVDNEVYIANAGDSRAVLCRDSKAQDLSEDHKPEDEAEK 121
V + + +++AN GDSRAVLCR A LS DHKP+ E E
Sbjct: 128 ------------------VAVVFPSHIFVANCGDSRAVLCRGKTALPLSVDHKPDREDEA 169
Query: 122 SRIVKAGGEVT--PCGRVNGGLNLSRALG 148
+RI AGG+V RV G L +SR++G
Sbjct: 170 ARIEAAGGKVIQWNGARVFGVLAMSRSIG 198
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted
catalysis, dehydrogenase phosphatase, hydrolase; 2.38A
{Homo sapiens} PDB: 3qht_A 1l2n_A
Length = 389
Score = 136 bits (343), Expect = 4e-37
Identities = 57/263 (21%), Positives = 85/263 (32%), Gaps = 87/263 (33%)
Query: 60 MKEALDHKDVPGMDSGCTAVVVLFVDN-EVYIANAGDSRAVLCRDSKAQDLSEDHKPEDE 118
A D + SG TA V L D E+ +A+ GD
Sbjct: 201 SSHARLSADATLLTSGTTATVALLRDGIELVVASVGD----------------------- 237
Query: 119 AEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSGTAH-LSKRKLLDHK 177
SR + L R G L+ DH
Sbjct: 238 ---SRAI-----------------LCRK-----------------GKPMKLTI----DHT 256
Query: 178 PEDEAEKSRIVKAGGEVT----PCGRVNGGLNLSRALGKSRFSPAYFLAL-------NNS 226
PE + EK RI K GG V VNG L ++R++G + +A +
Sbjct: 257 PERKDEKERIKKCGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKTSGVIAEPETKRIKLHH 316
Query: 227 RTDEFIVSACDGIWNSLSSQEVVDFVRERIGKQEKLIDICEELFDKCLAPDSLGDGTGCD 286
D F+V DGI ++SQE+ DFV + E + ++ + + D
Sbjct: 317 ADDSFLVLTTDGINFMVNSQEICDFVNQCHDPNE----AAHAVTEQAIQYGT------ED 366
Query: 287 NMTCVLVKIEPGRLSRDNAAPIS 309
N T V+V +++ S
Sbjct: 367 NSTAVVVPFGAWGKYKNSEINFS 389
Score = 109 bits (273), Expect = 3e-27
Identities = 39/132 (29%), Positives = 50/132 (37%), Gaps = 42/132 (31%)
Query: 21 MKEALDHKDVPGMDSGCTAVVVLFVDNEVSLSREDIQKRMKEALDHKDVPGMDSGCTAVV 80
A D + SG TA V L D
Sbjct: 201 SSHARLSADATLLTSGTTATVALLRDG--------------------------------- 227
Query: 81 VLFVDNEVYIANAGDSRAVLCRDSKAQDLSEDHKPEDEAEKSRIVKAGGEVT----PCGR 136
E+ +A+ GDSRA+LCR K L+ DH PE + EK RI K GG V
Sbjct: 228 -----IELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKKCGGFVAWNSLGQPH 282
Query: 137 VNGGLNLSRALG 148
VNG L ++R++G
Sbjct: 283 VNGRLAMTRSIG 294
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein
structure initiative, NEW YORK structural research
consortium, nysgxrc; 2.71A {Toxoplasma gondii}
Length = 377
Score = 131 bits (331), Expect = 2e-35
Identities = 25/178 (14%), Positives = 46/178 (25%), Gaps = 25/178 (14%)
Query: 175 DHKPEDEAEKSRIVKAGGEVTP---CGRVNGGLNLSRALGKSRFSPAYFLALNN------ 225
H E+ R+ AGG T + G + ++RA G F L
Sbjct: 192 PHTASSHKERHRVQAAGGVFTTVNGELLLGGVVPMTRAFGSFDFKKGGQGKLQQDLVSAV 251
Query: 226 ------SRT-DEFIVSACDGIWNSLSSQEVVDFVRERIG-KQEKLIDICEELFDKCLAPD 277
+ IV+ G + S + E ++D + +
Sbjct: 252 PDVTTFFAYPGDDIVAGTAGAFAHFRSHAAIAAAIALYPVSPETVLDAAKAMVVNAKRRK 311
Query: 278 SLGDGTGCDNMTCVLVKIEPGRLSRDNAAPISVASAKRSREDTEAAANPSKKSKTEEG 335
N++ + + R + S + ED + G
Sbjct: 312 V------TKNISTFVRHLPESRTRSQKM--LEGTSGENGEEDFSIDRTNELTQALQAG 361
Score = 108 bits (270), Expect = 6e-27
Identities = 29/142 (20%), Positives = 46/142 (32%), Gaps = 12/142 (8%)
Query: 19 KRMKEALDHKDVPGMDSGCTAVVVLFVDNEVSLSREDIQKRMKEALDHKDVPGMDSGCTA 78
+RM L ++PG S V + +
Sbjct: 90 ERMDGDLRAANLPGGSSALIIFVRYEKKPTEARVVGRQIVPEGAKEFTSVAEALGGPLMP 149
Query: 79 VVVL---------FVDNEVYIANAGDSRAVLCRDSKAQDLSEDHKPEDEAEKSRIVKAGG 129
VV + +++A+ G+SR VL A LS H E+ R+ AGG
Sbjct: 150 VVAMNFRRDPRAAKGIYTIHVASLGNSRCVLKSGRTAIHLSTPHTASSHKERHRVQAAGG 209
Query: 130 EVTP---CGRVNGGLNLSRALG 148
T + G + ++RA G
Sbjct: 210 VFTTVNGELLLGGVVPMTRAFG 231
>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases,
PSTP/PPP, structural genomics, PSI, protein structure
initiative; 1.95A {Mycobacterium tuberculosis} SCOP:
d.219.1.1 PDB: 2cm1_A
Length = 237
Score = 57.6 bits (140), Expect = 6e-10
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 61 KEALDHKDVPGMDSGCTAVVVLFVDNEVYIANAGDSRAVLCRDSKAQDLSEDH 113
+ D+ GM G T +LF N + + + GDSR L RD + +++D
Sbjct: 83 AQVEMEPDLEGM--GTTLTAILFAGNRLGLVHIGDSRGYLLRDGELTQITKDD 133
Score = 31.0 bits (71), Expect = 0.40
Identities = 18/92 (19%), Positives = 39/92 (42%), Gaps = 15/92 (16%)
Query: 206 LSRALGKSRFSPAYFLALNNSRTDEFIVSAC-DGIWNSLSSQEVVDFVRERIGKQEKLID 264
+ RAL P + D +++ C DG+ + +S + +++ ++ ++ +
Sbjct: 159 IMRALTGHEVEPTLTM-REARAGDRYLL--CSDGLSDPVSDETILEALQI-----PEVAE 210
Query: 265 ICEELFDKCLAPDSLGDGTGCDNMTCVLVKIE 296
L + L G G DN+T V+ +E
Sbjct: 211 SAHRLIELAL------RGGGPDNVTVVVADLE 236
>3rnr_A Stage II sporulation E family protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans}
Length = 211
Score = 55.7 bits (135), Expect = 2e-09
Identities = 12/53 (22%), Positives = 19/53 (35%)
Query: 61 KEALDHKDVPGMDSGCTAVVVLFVDNEVYIANAGDSRAVLCRDSKAQDLSEDH 113
+ A + + V D + A+ GD R L + + LS DH
Sbjct: 59 RWASQGGILGRTGATMAVAAVNLRDGTLEWASVGDCRVYLFKGGRLSRLSLDH 111
Score = 32.2 bits (74), Expect = 0.15
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 13/91 (14%)
Query: 206 LSRALG-KSRFSPAYFLALNNSRTDEFIVSACDGIWNSLSSQEVVDFVRERIGKQEKLID 264
++ +G ++ + A E ++ DG++ SL + +
Sbjct: 133 ITSFIGIENLTEISTSEAPLPLEAGEGVLVVSDGVYRSLHEDRIAMALSRG--------S 184
Query: 265 ICEELFDKCLAPDSLGDGTGCDNMTCVLVKI 295
+ + A G DN T LV +
Sbjct: 185 DARGILQEVEA---QGRP-YQDNATLALVIL 211
>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling
protein; 2.65A {Streptococcus agalactiae}
Length = 250
Score = 55.4 bits (134), Expect = 5e-09
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 54 EDIQKRMKEALDHKDVPGMDSGCTAVVVLFVDNEVYIANAGDSRAVLCRDSKAQDLSEDH 113
E +++ E D GM G T V V + + A+ GDSR + R + L+ DH
Sbjct: 84 ETENRKIYELGQSDDYKGM--GTTIEAVAIVGDNIIFAHVGDSRIGIVRQGEYHLLTSDH 141
Score = 29.2 bits (66), Expect = 1.5
Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 206 LSRALGKSRFSPAYFLALNNSRTDEFIVSAC-DGIWNSLSSQEVVDFVRERIGKQEKLID 264
+++++G++ D +V DG+ N LS+ ++ + + +K
Sbjct: 167 ITQSIGQANPVEPDLGVHLLEEGDYLVV--NSDGLTNMLSNADIATVLTQEKTLDDK--- 221
Query: 265 ICEELFDKCLAPDSLGDGTGCDNMTCVLVKIE 296
++L G DN+T LV +E
Sbjct: 222 -NQDLITLAN------HRGGLDNITVALVYVE 246
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese,
phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A
2jft_A 2v06_A
Length = 234
Score = 52.6 bits (127), Expect = 3e-08
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 61 KEALDHKDVPGMDSGCTAVVVLFV-DNEVYIANAGDSRAVLCRDSKAQDLSEDH 113
+ D V G TAV V + N GDS RD + L++DH
Sbjct: 79 ELLGDEPTVSGT--TLTAVAVFEPGQGGPLVVNIGDSPLYRIRDGHMEQLTDDH 130
Score = 26.8 bits (60), Expect = 9.6
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 14/91 (15%)
Query: 206 LSRALGKSRFSPAYFLALNNSRTDEFIVSAC-DGIWNSLSSQEVVDFVRERIGKQEKLID 264
L+RALG ++ D ++ DG++ + +
Sbjct: 156 LTRALGIGPHIGPDVFGIDCGPGDRLLI--SSDGLFAAADEALI-----VDAATSPDPQV 208
Query: 265 ICEELFDKCLAPDSLGDGTGCDNMTCVLVKI 295
L + D G DN T V++ +
Sbjct: 209 AVRRLVEVAN------DAGGSDNTTVVVIDL 233
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family
phosphatase, hydrolase; 1.28A {Synechococcus elongatus}
PDB: 2j86_A 2y09_A 2xzv_A
Length = 240
Score = 52.2 bits (126), Expect = 4e-08
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 61 KEALDHKDVPGMDSGCTAVVVLFVD--NEVYIANAGDSRAVLCRDSKAQDLSEDH 113
++ + M G TAVV+L + + + A+ GDSR R + Q ++ DH
Sbjct: 85 EQQRQNSARADM--GTTAVVILLDEKGDRAWCAHVGDSRIYRWRKDQLQQITSDH 137
Score = 28.3 bits (64), Expect = 3.1
Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 14/91 (15%)
Query: 206 LSRALGKSRFSPAYFLALNNSRTDEFIVSAC-DGIWNSLSSQEVVDFVRERIGKQEKLID 264
LS+ LG+ S ++ D ++ C DG+ L+ + + +
Sbjct: 163 LSQCLGREDLSQIDIQPIDLEPGDRLLL--CSDGLTEELTDDVI-----SIYLSEPNVQK 215
Query: 265 ICEELFDKCLAPDSLGDGTGCDNMTCVLVKI 295
L D G DN+T V++ +
Sbjct: 216 AAAALVDAAK------THGGRDNVTVVVISV 240
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 1e-07
Identities = 56/373 (15%), Positives = 112/373 (30%), Gaps = 108/373 (28%)
Query: 5 VDFESG--GLSREDI----QKRMKEALDHKDVPGMDSGC--TAVV--VLFVDNEVSLSR- 53
+DFE+G +DI + + D KDV M + ++ + VS +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 54 ---------EDIQKRMKEALDHKDVPG-MDSGCTAVVVLFVDNEVYIANAGDSRAVLCRD 103
E++ ++ E + + M T + +YI + R L D
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI----EQRDRLYND 122
Query: 104 SKAQDLSEDHKPEDEAEKSRIVKAGGEVTPCGRVN----GGLNLSRALGKSRFSPAYFLA 159
+ Q ++ + + ++ +A E+ P V G GK+ ++A
Sbjct: 123 N--QVFAKYNVSRLQ-PYLKLRQALLELRPAKNVLIDGVLG------SGKT------WVA 167
Query: 160 LNNSGTAHLSKRKLLDHKPEDEAEKSRI--VKAGGEVTPCGRVNGGLNLSRALGK----- 212
L+ L +K + + + +I + +P + L +
Sbjct: 168 LD----------VCLSYKVQCKMD-FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 213 SRFSPAYFLALNN--SRTDEFIVSA----C----DGIWNS-------LSSQ--------E 247
S S L +++ + + S C + N+ LS + +
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 248 VVDFVRERIGKQEKLIDIC--------EELFDKCLAPDSLGDGTGCDNMTCVLVKIEP-- 297
V DF+ L + L K L ++ ++ P
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-------DCRPQDLPREVLTTNPRR 329
Query: 298 ----GRLSRDNAA 306
RD A
Sbjct: 330 LSIIAESIRDGLA 342
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative, northeast structural
genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Length = 204
Score = 34.1 bits (79), Expect = 0.033
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 17/65 (26%)
Query: 14 REDIQKRMKEALDHK----DVP-----GMDSGCTAVVVLFVDNEV--------SLSREDI 56
++I+K K + + G ++V++ EV +S ED
Sbjct: 92 YKEIEKITKNLSEDTLFILEASLLVEKGTYKNYDKLIVVYAPYEVCKERAIKRGMSEEDF 151
Query: 57 QKRMK 61
++R K
Sbjct: 152 ERRWK 156
Score = 27.5 bits (62), Expect = 4.5
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 9/45 (20%)
Query: 53 REDIQKRMKEALDHK----DVP-----GMDSGCTAVVVLFVDNEV 88
++I+K K + + G ++V++ EV
Sbjct: 92 YKEIEKITKNLSEDTLFILEASLLVEKGTYKNYDKLIVVYAPYEV 136
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.11
Identities = 46/271 (16%), Positives = 84/271 (30%), Gaps = 113/271 (41%)
Query: 56 IQKR-MKEALDHKDVPGMDSGCTAVVV--LF--VDN---EVY-------IANAGDSRAVL 100
Q++ M GMD T+ ++ DN + Y + N + +
Sbjct: 1626 SQEQGM----------GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH 1675
Query: 101 CRDSKAQDLSE-------DHKPEDEAEKSRIVKAGGEVT-------PCGRVNGGLNL--- 143
K + + E + + + + +I K E + G L+
Sbjct: 1676 FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE----KGLLSATQF 1731
Query: 144 --------SRALG---KSRF---SPAYF----L----ALNNSGTAHLSKRKLLDHKPEDE 181
+A KS+ + A F L AL A L+ ++ E
Sbjct: 1732 TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAAL-----ASLAD--VMS--IESL 1782
Query: 182 AEKSRIVKAGGEVTPCGRVNGGLNLSRA-----LGKSRFSPAYFLALNNSRTDEFIVSAC 236
+V R G+ + A LG+S + A+N R + ++
Sbjct: 1783 V---EVVFY--------R---GMTMQVAVPRDELGRSNYGMI---AINPGR----VAASF 1821
Query: 237 DGIWNSLSSQEVVDFVRERIGKQEKLIDICE 267
QE + +V ER+GK+ + E
Sbjct: 1822 S--------QEALQYVVERVGKRTG--WLVE 1842
Score = 31.6 bits (71), Expect = 0.42
Identities = 65/358 (18%), Positives = 104/358 (29%), Gaps = 139/358 (38%)
Query: 6 DFESGGLSREDIQKRMKEALDHKDVPGMDSGCTAVVVLFVDNEVSL-------------- 51
+FE+ L DI H L +N+ +L
Sbjct: 90 EFENCYLEGNDI---------H----------ALAAKLLQENDTTLVKTKELIKNYITAR 130
Query: 52 --SREDIQKRMKEALDHKDVPGMDSGCTAVVVLF-----VDN---------EVYIANAGD 95
++ K+ AL + G +V +F D+ + Y GD
Sbjct: 131 IMAKRPFDKKSNSAL----FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD 186
Query: 96 SRAVLCRDSKAQDLSEDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRAL-GKSRFSP 154
L + S A+ LSE + +AEK + GLN+ L S
Sbjct: 187 ----LIKFS-AETLSELIRTTLDAEKV-----------FTQ---GLNILEWLENPSNTPD 227
Query: 155 AYFLA-----LNNSG---TAH-LSKRKLLDHKPEDEAEKSRIVKAGGEVTPCGRVNGGLN 205
+L G AH + KLL P + + G T + GL
Sbjct: 228 KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK----G--ATGHSQ---GL- 277
Query: 206 LSRALGKSRFSPAYFLALNNSRTDEFIVSACDGI----W-----------NSLSSQEVVD 250
++ A +A +S + F VS I + SL + D
Sbjct: 278 VT----------AVAIAETDSW-ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 251 FVRERIG-----------KQEKLIDICEELFDKCLAPD-----SLGDGTGCDNMTCVL 292
+ G QE++ D + + L SL +G N+ V+
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNK-TNSHLPAGKQVEISLVNGA--KNL--VV 379
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin
regulator, metal-binding, nucleus, transcript
transcription regulation, zinc-finger; HET: MLZ; 2.10A
{Homo sapiens} PDB: 3dbb_A* 3cey_A
Length = 456
Score = 31.6 bits (71), Expect = 0.37
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 41 VVLFVDNEVSLSREDIQKRMK-EALDHKDVPGMDSGCTAVVVLFVDNEVYI 90
V F + ED+ K MK E L+ V A V+ V +
Sbjct: 26 VSCFKHVPLYDQWEDVMKGMKVEVLNSDAVLPSRVYWIASVIQTAGYRVLL 76
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2
function project, S2F, structural genomics, transferase;
HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Length = 206
Score = 30.9 bits (71), Expect = 0.43
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 21/66 (31%)
Query: 17 IQKRMKEALDHK-------DVP-----GMDSGCTAVVVLFVDNEV---------SLSRED 55
I++RMK+ L + VP + + C ++V+ V + + + E
Sbjct: 92 IRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRDNNNFEQ 151
Query: 56 IQKRMK 61
IQ+ M
Sbjct: 152 IQRIMN 157
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849,
bifunctional coenzyme A synthase (COA synthase), S
genomics; HET: ACO UNL; 1.70A {Mus musculus}
Length = 281
Score = 30.3 bits (69), Expect = 0.77
Identities = 10/68 (14%), Positives = 18/68 (26%), Gaps = 20/68 (29%)
Query: 14 REDIQKRMKEALDHK------DVP-----GMDSGCTAVVVLFVDNEV---------SLSR 53
+ ++ M A+ D G S V + + LS
Sbjct: 166 AKLAREEMDVAVAKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVERDGLSE 225
Query: 54 EDIQKRMK 61
Q R++
Sbjct: 226 AAAQSRLQ 233
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3;
1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A*
1viy_A 1t3h_A 1n3b_A
Length = 218
Score = 29.8 bits (68), Expect = 0.83
Identities = 10/66 (15%), Positives = 22/66 (33%), Gaps = 21/66 (31%)
Query: 17 IQKRMKEALDHK-------DVP-----GMDSGCTAVVVLFVDNEV---------SLSRED 55
IQ+ + + VP + V+V+ V E ++RE
Sbjct: 94 IQQETQHQIQQATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREH 153
Query: 56 IQKRMK 61
+++ +
Sbjct: 154 VEQILA 159
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus}
SCOP: c.37.1.1
Length = 203
Score = 29.4 bits (67), Expect = 1.1
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 21/66 (31%)
Query: 17 IQKRMKEALDHK-------DVP-----GMDSGCTAVVVLFVDNEV---------SLSRED 55
+++ + E L ++P G + +++ E LSRE+
Sbjct: 93 VRRLLMEELSRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLEERVRRVMARSGLSREE 152
Query: 56 IQKRMK 61
+ R +
Sbjct: 153 VLARER 158
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.2
Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 9/24 (37%)
Query: 258 KQE--KLIDICE-ELFDKCLAPDS 278
KQ KL + L K A DS
Sbjct: 19 KQALKKL----QASL--KLYADDS 36
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme
kinase, structural genomics, joint center for structural
GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Length = 192
Score = 29.4 bits (67), Expect = 1.2
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 12/57 (21%)
Query: 17 IQKRMKEALDHK------DVP-----GMDSGCTAVVVLFVDNEVSLSR-EDIQKRMK 61
++KR++E ++ + G+D C V+ + E L R + +R+K
Sbjct: 99 MKKRVQEIINKTSGLIVIEAALLKRMGLDQLCDHVITVVASRETILKRNREADRRLK 155
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 29.1 bits (66), Expect = 1.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 9 SGGLSREDIQKRMKEALDHKD 29
SGGLS++DI+ +K A + +
Sbjct: 135 SGGLSKDDIENMVKNAEKYAE 155
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 29.1 bits (66), Expect = 1.5
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 9 SGGLSREDIQKRMKEALDHKD 29
S GL+ ++IQK +++A + +
Sbjct: 116 SSGLNEDEIQKMVRDAEANAE 136
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12,
HSP70 protein, peptide-BIN domain, PSI-2, protein
structure initiative; 1.72A {Caenorhabditis elegans}
Length = 151
Score = 28.8 bits (65), Expect = 1.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 9 SGGLSREDIQKRMKEALDHKD 29
SGGLS++ I+ +KEA +
Sbjct: 115 SGGLSKDQIENMIKEAEKNAA 135
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS,
T4PB, inner membrane membrane, transmembrane, transport
protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB:
2vmb_A* 2vma_A*
Length = 123
Score = 27.6 bits (62), Expect = 3.2
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 116 EDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYF--LALN------NSGTAH 167
+++EK RI V +V G LS +LG P F L + SG
Sbjct: 39 AEQSEKPRIRTMLVAVR--AKVTEGYTLSDSLGD---YPHVFDELFRSMVAAGEKSGHLD 93
Query: 168 LSKRKLLDHKPEDEAEKSRIVKA 190
+L D+ + +S++ +A
Sbjct: 94 SVLERLADYAENRQKMRSKLQQA 116
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 28.3 bits (64), Expect = 3.9
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 9 SGGLSREDIQKRMKEALDHKD 29
S GLS E+IQ+ +KEA ++ +
Sbjct: 473 SSGLSEEEIQRMIKEAEENAE 493
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 28.0 bits (63), Expect = 5.4
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 9 SGGLSREDIQKRMKEALDHKD 29
S GL+ ++IQK +++A + +
Sbjct: 504 SSGLNEDEIQKMVRDAEANAE 524
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 27.5 bits (62), Expect = 5.6
Identities = 5/21 (23%), Positives = 13/21 (61%)
Query: 9 SGGLSREDIQKRMKEALDHKD 29
S GL+ +I +K+++ + +
Sbjct: 113 SYGLTDSEIASMIKDSMSYAE 133
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 27.9 bits (63), Expect = 5.9
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 231 FIVSACDGIWNSLSSQEVVDFVRERIG--KQEKLIDICEEL 269
FIV + ++++++VRERI K+ + ++ EEL
Sbjct: 484 FIVLK-PEYRGKVDEEDIIEWVRERISGYKRVREVEFVEEL 523
>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO
center for structural genomics, JCSG, protein structure
INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}
Length = 163
Score = 26.9 bits (59), Expect = 6.1
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 278 SLGDGTGCDNMTCVLVKIEPGRLS 301
LGD G LV++EPG S
Sbjct: 33 RLGDAGGLSQFGVNLVRLEPGAKS 56
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain,
structural genomics, APC90014. 2, protein structure
initiative; 1.85A {Caenorhabditis elegans}
Length = 152
Score = 26.8 bits (60), Expect = 7.6
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 4 TVDFESGGLSREDIQKRMKEALDHKD 29
T+ + LS EDI++ + +A
Sbjct: 111 TITNDHNRLSPEDIERMINDADKFAA 136
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2;
1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 26.4 bits (59), Expect = 8.4
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 4 TVDFESGGLSREDIQKRMKEALDHKD 29
T+ + G L++E+I + ++EA
Sbjct: 111 TITNDKGRLTQEEIDRMVEEAEKFAS 136
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.374
Gapped
Lambda K H
0.267 0.0766 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,030,440
Number of extensions: 308890
Number of successful extensions: 755
Number of sequences better than 10.0: 1
Number of HSP's gapped: 684
Number of HSP's successfully gapped: 75
Length of query: 336
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 242
Effective length of database: 4,077,219
Effective search space: 986686998
Effective search space used: 986686998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.7 bits)