RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7329
         (336 letters)



>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase
           2C, catalytic domain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 295

 Score = 96.2 bits (238), Expect = 2e-23
 Identities = 67/236 (28%), Positives = 94/236 (39%), Gaps = 55/236 (23%)

Query: 59  RMKEALDHKDVPGMDSGCTAVVVLFVDNEVYIANAGDSRAVLCRDSKAQDLSEDHKPEDE 118
                +  K      SG TAV VL      Y  N GDSR +LCR+ K    ++DHKP + 
Sbjct: 109 EHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNP 168

Query: 119 AEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSGTAHLSKRKLLDHKP 178
            EK RI  AGG      RVNG L +SRALG   +   +         +   +   ++   
Sbjct: 169 LEKERIQNAGGS-VMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSE 227

Query: 179 EDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSRTDEFIVSACDG 238
           ED                                                D+FI+ ACDG
Sbjct: 228 ED------------------------------------------------DQFIILACDG 239

Query: 239 IWNSLSSQEVVDFVRERIGKQEKLIDICEELFDKCLAPDSLGDGTGCDNMTCVLVK 294
           IW+ + ++E+ DFVR R+   + L  +C E+ D CL   S       DNM+ +L+ 
Sbjct: 240 IWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGS------RDNMSVILIC 289


>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase
           pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 235

 Score = 54.1 bits (129), Expect = 4e-09
 Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 17/122 (13%)

Query: 175 DHKPEDEAEKSRIVKAGGEVTPCGRVNGGLNLSRALGKSRFSPAYFLALNNSRTDEFIVS 234
           D            +                 + RAL      P   +    +R  +  + 
Sbjct: 130 DDTFVQTLVDEGRITPEE----AHSHPQRSLIMRALTGHEVEPTLTM--REARAGDRYLL 183

Query: 235 ACDGIWNSLSSQEVVDFVRERIGKQEKLIDICEELFDKCLAPDSLGDGTGCDNMTCVLVK 294
             DG+ + +S + +++ ++       ++ +    L +  L       G G DN+T V+  
Sbjct: 184 CSDGLSDPVSDETILEALQI-----PEVAESAHRLIELAL------RGGGPDNVTVVVAD 232

Query: 295 IE 296
           +E
Sbjct: 233 LE 234



 Score = 38.0 bits (87), Expect = 0.001
 Identities = 14/63 (22%), Positives = 24/63 (38%)

Query: 74  SGCTAVVVLFVDNEVYIANAGDSRAVLCRDSKAQDLSEDHKPEDEAEKSRIVKAGGEVTP 133
            G T   +LF  N + + + GDSR  L RD +   +++D            +      + 
Sbjct: 92  MGTTLTAILFAGNRLGLVHIGDSRGYLLRDGELTQITKDDTFVQTLVDEGRITPEEAHSH 151

Query: 134 CGR 136
             R
Sbjct: 152 PQR 154


>d1leha2 c.58.1.1 (A:1-134) Leucine dehydrogenase {Bacillus
           sphaericus [TaxId: 1421]}
          Length = 134

 Score = 26.0 bits (57), Expect = 3.6
 Identities = 5/38 (13%), Positives = 13/38 (34%), Gaps = 3/38 (7%)

Query: 5   VDFESGGLSREDIQKRMKEALDH---KDVPGMDSGCTA 39
           +  +      ED+ + +   +     + +   D G T 
Sbjct: 83  IIGDPFADKNEDMFRALGRFIQGLNGRYITAEDVGTTV 120



 Score = 24.8 bits (54), Expect = 8.6
 Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 32  GMDSGCTAVVVLFVDNEVSLSREDIQKRMKEALDH---KDVPGMDSGCTA 78
           G++ G    V++   +  +   ED+ + +   +     + +   D G T 
Sbjct: 73  GLNLGGGKTVIIG--DPFADKNEDMFRALGRFIQGLNGRYITAEDVGTTV 120


>d2aeba1 c.42.1.1 (A:5-313) Arginase {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 309

 Score = 26.0 bits (56), Expect = 6.4
 Identities = 7/34 (20%), Positives = 13/34 (38%)

Query: 1   MVSTVDFESGGLSREDIQKRMKEALDHKDVPGMD 34
             +T     GGL+  +     +E      + G+D
Sbjct: 237 TPATGTPVVGGLTYREGLYITEEIYKTGLLSGLD 270


>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
           methyltransferase Dot1l {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 406

 Score = 26.2 bits (57), Expect = 6.9
 Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 11/59 (18%)

Query: 14  REDIQKRMKEALDHKDVPGMDSGCTAVVVLFVDNEV--SLSREDIQKRMKEALDHKDVP 70
           +E I   +  + D+ D  G  +           N++   + R+ I   ++       +P
Sbjct: 114 KETILPDLNASFDNSDTKGFVNAINLY------NKMIREIPRQRIIDHLET---IDKIP 163


>d2a0ma1 c.42.1.1 (A:13-310) Arginase {Trypanosoma cruzi [TaxId:
           5693]}
          Length = 298

 Score = 26.0 bits (56), Expect = 7.0
 Identities = 8/34 (23%), Positives = 11/34 (32%)

Query: 1   MVSTVDFESGGLSREDIQKRMKEALDHKDVPGMD 34
           M       + GLS ++       A     V  MD
Sbjct: 233 MPGVSCPAAVGLSAQEAFDMCFLAGKTPTVMMMD 266


>d1pq3a_ c.42.1.1 (A:) Arginase {Human (Homo sapiens), isoform II,
           mitochondrial [TaxId: 9606]}
          Length = 306

 Score = 25.6 bits (55), Expect = 8.1
 Identities = 6/34 (17%), Positives = 13/34 (38%)

Query: 1   MVSTVDFESGGLSREDIQKRMKEALDHKDVPGMD 34
             +T     GGL+  +     +E  +   +  +D
Sbjct: 237 APATGTPVVGGLTYREGMYIAEEIHNTGLLSALD 270


>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 159

 Score = 24.9 bits (54), Expect = 9.6
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 4   TVDFESGGLSREDIQKRMKEALDHKD 29
           T+  + G LS+EDI++ ++EA  +K 
Sbjct: 118 TITNDKGRLSKEDIERMVQEAEKYKA 143


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0613    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,187,209
Number of extensions: 54575
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 17
Length of query: 336
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 250
Effective length of database: 1,226,816
Effective search space: 306704000
Effective search space used: 306704000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.4 bits)