BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy733
         (97 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3V5S|A Chain A, Structure Of SodiumCALCIUM EXCHANGER FROM METHANOCOCCUS
           JANNASCHII
 pdb|3V5U|A Chain A, Structure Of SodiumCALCIUM EXCHANGER FROM
           METHANOCALDOCOCCUS Jannaschii Dsm 2661
          Length = 320

 Score = 32.3 bits (72), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 9   DLASHFGCSVGLKDAVTAISFVALGTSVPDTFASKVSAIQDSTADNSVGNVTGSNAVNV 67
           D A     ++ + D V   + VA GTS+P+   S ++A + +     +GNV GSN  ++
Sbjct: 184 DGAKKIALALDISDKVIGFTLVAFGTSLPELMVS-LAAAKRNLGGMVLGNVIGSNIADI 241



 Score = 28.1 bits (61), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 9  DLASHFGCSVGLKDAVTAISFVALGTSVPDTFASKVSAIQDSTADNSVGNVTGSNAVNVF 68
           +A HF  S    + V   + +A+GTS+P+   S  ++   +    S+GN  GS   N+ 
Sbjct: 29 RIARHFNVS----NFVIGATVMAIGTSLPEILTSAYASYMHAPGI-SIGNAIGSCICNIG 83

Query: 69 LGLGIA 74
          L LG++
Sbjct: 84 LVLGLS 89


>pdb|2QNW|A Chain A, Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier
          Protein
          Length = 82

 Score = 26.6 bits (57), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 6  FIGDLASHFGCSVGLKDAVTAISFVALGTSVPDTFASKVSAIQDS 50
          FI DL +    SV L   V A      G S+PD  ASK++ +QD+
Sbjct: 33 FIKDLDADSLDSVEL---VMAFE-EKFGVSIPDEEASKIATVQDA 73


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,828,767
Number of Sequences: 62578
Number of extensions: 90386
Number of successful extensions: 153
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 148
Number of HSP's gapped (non-prelim): 5
length of query: 97
length of database: 14,973,337
effective HSP length: 63
effective length of query: 34
effective length of database: 11,030,923
effective search space: 375051382
effective search space used: 375051382
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)