Query psy733
Match_columns 97
No_of_seqs 122 out of 1125
Neff 6.0
Searched_HMMs 29240
Date Sat Aug 17 00:00:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v5u_A Uncharacterized membran 99.8 4.1E-20 1.4E-24 141.9 3.2 77 4-81 20-96 (320)
2 3v5u_A Uncharacterized membran 99.7 5.2E-19 1.8E-23 135.7 3.7 77 3-80 178-254 (320)
3 1tc3_C Protein (TC3 transposas 13.2 1.1E+02 0.0038 14.5 1.8 16 10-25 23-38 (51)
4 2zjs_Y Preprotein translocase 13.0 4.8E+02 0.016 20.2 7.3 41 4-45 165-205 (434)
5 1cq4_A Protein (serine protein 10.6 41 0.0014 18.2 -0.6 7 34-40 3-9 (47)
6 1z67_A Hypothetical protein S4 9.5 2.2E+02 0.0075 18.8 2.6 33 9-44 76-108 (135)
7 1j5u_A Archease, possible chap 8.4 1.7E+02 0.0059 19.1 1.8 18 31-48 27-44 (136)
8 2jpc_A SSRB; DNA binding prote 8.2 2.1E+02 0.0073 14.7 1.8 19 10-28 15-33 (61)
9 2heo_A Z-DNA binding protein 1 8.1 2E+02 0.0068 15.9 1.8 15 10-24 27-41 (67)
10 3kdr_A HK97 family phage porta 8.1 1.5E+02 0.0052 21.4 1.5 21 8-28 216-236 (310)
No 1
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.78 E-value=4.1e-20 Score=141.88 Aligned_cols=77 Identities=22% Similarity=0.319 Sum_probs=73.9
Q ss_pred hhhHHHHHHHHHHHhCCChhHHHHHHHhhcCChHHHHHHHHHHHhcCCCCceeccccchhHHHHHHHHHHHHHHHHHH
Q psy733 4 TAFIGDLASHFGCSVGLKDAVTAISFVALGTSVPDTFASKVSAIQDSTADNSVGNVTGSNAVNVFLGLGIAWSLAAIY 81 (97)
Q Consensus 4 ~~~l~~~a~~i~~~~gis~~v~G~tllA~gtSlPEl~~~~~aa~~~g~~~lavg~iiGSn~~ni~~~lGl~~l~~~i~ 81 (97)
+.+++++++.+++++|+||.++|+|++|+|||+||+++++.|+++ |++|+++||++|||+||+++++|++++++|+.
T Consensus 20 a~~lv~~~~~la~~lgis~~viGltiva~GTSlPEl~vsi~A~~~-g~~diaiGnivGSni~nillvlG~~~li~p~~ 96 (320)
T 3v5u_A 20 SDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYM-HAPGISIGNAIGSCICNIGLVLGLSAIISPII 96 (320)
T ss_dssp HHHHHHHHHHHHHHHTBCHHHHHHTHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTHHHHHHHHSCBC
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHcccHHHHHHHHHHhC-CCCceeeeeecchHHHHHHHHHHHHHHHcccc
Confidence 567899999999999999999999999999999999999999999 99999999999999999999999999998764
No 2
>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation protein complex, sodium,calcium EX membrane protein; HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii} PDB: 3v5s_A*
Probab=99.74 E-value=5.2e-19 Score=135.71 Aligned_cols=77 Identities=25% Similarity=0.341 Sum_probs=73.9
Q ss_pred hhhhHHHHHHHHHHHhCCChhHHHHHHHhhcCChHHHHHHHHHHHhcCCCCceeccccchhHHHHHHHHHHHHHHHHH
Q psy733 3 YTAFIGDLASHFGCSVGLKDAVTAISFVALGTSVPDTFASKVSAIQDSTADNSVGNVTGSNAVNVFLGLGIAWSLAAI 80 (97)
Q Consensus 3 ~~~~l~~~a~~i~~~~gis~~v~G~tllA~gtSlPEl~~~~~aa~~~g~~~lavg~iiGSn~~ni~~~lGl~~l~~~i 80 (97)
-+++++++++.+++.+|+|+.++|+|++|+|||+||+++++.++|| |+.|+++||++|||+||+++++|+++++.|+
T Consensus 178 ~a~~lv~~~~~ia~~~gis~~~iGltlva~gtslPE~~~sv~aa~~-g~~~laig~iiGS~ifn~~~v~g~~~li~p~ 254 (320)
T 3v5u_A 178 GAELFVDGAKKIALALDISDKVIGFTLVAFGTSLPELMVSLAAAKR-NLGGMVLGNVIGSNIADIGGALAVGSLFMHL 254 (320)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHTHHHHHTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTHHHHHHHHSCB
T ss_pred HHHhccccHHHHHHHhCCchHHHHHHHHHHHhccHHHHHHHHHHHc-CCCcHHHHHHHhHHHHHHHHHHHHHHhhccc
Confidence 4788999999999999999999999999999999999999999999 9999999999999999999999999998765
No 3
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=13.21 E-value=1.1e+02 Score=14.51 Aligned_cols=16 Identities=0% Similarity=-0.070 Sum_probs=11.8
Q ss_pred HHHHHHHHhCCChhHH
Q psy733 10 LASHFGCSVGLKDAVT 25 (97)
Q Consensus 10 ~a~~i~~~~gis~~v~ 25 (97)
+...||+.+|+|...+
T Consensus 23 s~~~IA~~lgis~~Tv 38 (51)
T 1tc3_C 23 SLHEMSRKISRSRHCI 38 (51)
T ss_dssp CHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHCcCHHHH
Confidence 4567888888887654
No 4
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y
Probab=12.99 E-value=4.8e+02 Score=20.21 Aligned_cols=41 Identities=12% Similarity=0.142 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHhCCChhHHHHHHHhhcCChHHHHHHHHH
Q psy733 4 TAFIGDLASHFGCSVGLKDAVTAISFVALGTSVPDTFASKVS 45 (97)
Q Consensus 4 ~~~l~~~a~~i~~~~gis~~v~G~tllA~gtSlPEl~~~~~a 45 (97)
|.++.|-.+.+.+ .|+...+-=+.+.++-.++|..+.....
T Consensus 165 t~~lmwLgE~It~-~GIGnGiSliI~~gIv~~lp~~~~~~~~ 205 (434)
T 2zjs_Y 165 IALLLWMAERITE-YGIGNGTSLIIFAGIVVEWLPQILRTIG 205 (434)
T ss_dssp HHHHHHHHHHHHH-TSSSCHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-cCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888 8999888878888999999987766643
No 5
>1cq4_A Protein (serine proteinase inhibitor 2); serine protease inhibitor, polyglutamine insertion mutant, subtilisin- chymotrypsin inhibitor-2; 1.80A {Hordeum vulgare} SCOP: d.40.1.1
Probab=10.63 E-value=41 Score=18.21 Aligned_cols=7 Identities=29% Similarity=0.439 Sum_probs=4.6
Q ss_pred CChHHHH
Q psy733 34 TSVPDTF 40 (97)
Q Consensus 34 tSlPEl~ 40 (97)
+|.||++
T Consensus 3 ~sWPELV 9 (47)
T 1cq4_A 3 TEWPELV 9 (47)
T ss_dssp CBCGGGT
T ss_pred cCChhhc
Confidence 5677764
No 6
>1z67_A Hypothetical protein S4005; structural genomics, shigella flexneri protein structure initiative, midwest center for structural genomics; 1.45A {Shigella flexneri 2A} SCOP: a.259.1.1
Probab=9.48 E-value=2.2e+02 Score=18.82 Aligned_cols=33 Identities=15% Similarity=0.327 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhhcCChHHHHHHHH
Q psy733 9 DLASHFGCSVGLKDAVTAISFVALGTSVPDTFASKV 44 (97)
Q Consensus 9 ~~a~~i~~~~gis~~v~G~tllA~gtSlPEl~~~~~ 44 (97)
+-.+.+++++|+|+.-+.-. +...+|+++-.++
T Consensus 76 ~~l~~lA~q~Gl~~~~~~~~---LA~~LP~~VD~lT 108 (135)
T 1z67_A 76 NAVSDLGQKLGVDTSTASSL---LAEQLPKIIDALS 108 (135)
T ss_dssp HHHHHHHHHHTCCHHHHHHH---HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCcCHHHHHHH---HHHHHHHHHhccC
Confidence 45678999999999877664 4678998877654
No 7
>1j5u_A Archease, possible chaperone; structural genomics, joint center for structural G JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: d.208.1.1
Probab=8.35 E-value=1.7e+02 Score=19.09 Aligned_cols=18 Identities=11% Similarity=0.137 Sum_probs=15.2
Q ss_pred hhcCChHHHHHHHHHHHh
Q psy733 31 ALGTSVPDTFASKVSAIQ 48 (97)
Q Consensus 31 A~gtSlPEl~~~~~aa~~ 48 (97)
++|.|++|++...+-+..
T Consensus 27 a~G~tleEaFe~aa~Am~ 44 (136)
T 1j5u_A 27 ISGNSYEELLEEARNILL 44 (136)
T ss_dssp EEESSHHHHHHHHHHHHH
T ss_pred EEECCHHHHHHHHHHHHH
Confidence 789999999998877655
No 8
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=8.17 E-value=2.1e+02 Score=14.68 Aligned_cols=19 Identities=0% Similarity=-0.109 Sum_probs=14.0
Q ss_pred HHHHHHHHhCCChhHHHHH
Q psy733 10 LASHFGCSVGLKDAVTAIS 28 (97)
Q Consensus 10 ~a~~i~~~~gis~~v~G~t 28 (97)
+..+||+.+|+|+.-+---
T Consensus 15 s~~eIA~~l~is~~tV~~~ 33 (61)
T 2jpc_A 15 TNHGISEKLHISIKTVETH 33 (61)
T ss_dssp CSHHHHHHTCSCHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHH
Confidence 4568899999988766543
No 9
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=8.12 E-value=2e+02 Score=15.85 Aligned_cols=15 Identities=0% Similarity=-0.159 Sum_probs=9.9
Q ss_pred HHHHHHHHhCCChhH
Q psy733 10 LASHFGCSVGLKDAV 24 (97)
Q Consensus 10 ~a~~i~~~~gis~~v 24 (97)
+...|++.+|+|...
T Consensus 27 s~~eLA~~lglsr~t 41 (67)
T 2heo_A 27 AIFQLVKKCQVPKKT 41 (67)
T ss_dssp EHHHHHHHHCSCHHH
T ss_pred CHHHHHHHHCcCHHH
Confidence 356777777777544
No 10
>3kdr_A HK97 family phage portal protein; PS structural genomics, protein structure initiative, midwest for structural genomics; 2.90A {Corynebacterium diphtheriae}
Probab=8.05 E-value=1.5e+02 Score=21.44 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCChhHHHHH
Q psy733 8 GDLASHFGCSVGLKDAVTAIS 28 (97)
Q Consensus 8 ~~~a~~i~~~~gis~~v~G~t 28 (97)
-...+.|++.+|+|+.++|..
T Consensus 216 ~~s~~eIa~~fgVPp~llg~~ 236 (310)
T 3kdr_A 216 NAAAVDVARAMNVPAAFIDAT 236 (310)
T ss_dssp HHHHHHHHHHHTCCTTTTTCC
T ss_pred HHHHHHHHHHHCcCHHHhCCC
Confidence 356789999999999999864
Done!