Query psy733
Match_columns 97
No_of_seqs 122 out of 1125
Neff 6.0
Searched_HMMs 13730
Date Sat Aug 17 00:00:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy733.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/733hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vg0a1 c.3.1.3 (A:3-444,A:558 22.6 22 0.0016 26.6 2.4 20 31-51 11-30 (491)
2 d1o82a_ a.64.2.1 (A:) Bacterio 12.2 51 0.0037 17.9 1.6 15 15-29 2-16 (70)
3 d1or7a1 a.4.13.2 (A:120-187) S 11.4 37 0.0027 17.5 0.9 26 3-28 29-54 (68)
4 d1biaa1 a.4.5.1 (A:1-63) Bioti 11.2 62 0.0045 16.7 1.8 16 10-25 21-36 (63)
5 d1rp3a2 a.4.13.2 (A:164-234) S 10.8 27 0.002 18.0 0.1 24 4-27 33-56 (71)
6 d1z67a1 a.259.1.1 (A:3-131) Hy 10.7 88 0.0064 19.0 2.6 32 9-43 71-102 (129)
7 d1p7ia_ a.4.1.1 (A:) Engrailed 9.0 88 0.0064 15.5 1.9 17 10-26 28-44 (53)
8 d1to2i_ d.40.1.1 (I:) Chymotry 8.9 25 0.0018 19.2 -0.6 7 34-40 3-9 (64)
9 d1yt3a2 a.60.8.3 (A:295-375) R 8.7 1.1E+02 0.0078 16.6 2.3 21 7-27 16-36 (81)
10 d2cyya1 a.4.5.32 (A:5-64) Puta 8.6 95 0.0069 15.6 1.9 16 10-25 19-34 (60)
No 1
>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=22.59 E-value=22 Score=26.56 Aligned_cols=20 Identities=15% Similarity=0.441 Sum_probs=17.7
Q ss_pred hhcCChHHHHHHHHHHHhcCC
Q psy733 31 ALGTSVPDTFASKVSAIQDST 51 (97)
Q Consensus 31 A~gtSlPEl~~~~~aa~~~g~ 51 (97)
-+||.+||-+.+.+.+|. |.
T Consensus 11 I~GTGL~ESILAaAlSr~-Gk 30 (491)
T d1vg0a1 11 VIGTGLPESIIAAACSRS-GQ 30 (491)
T ss_dssp EECCSHHHHHHHHHHHHT-TC
T ss_pred EECCChHHHHHHHHHHhc-CC
Confidence 379999999999999999 55
No 2
>d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]}
Probab=12.21 E-value=51 Score=17.88 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=12.2
Q ss_pred HHHhCCChhHHHHHH
Q psy733 15 GCSVGLKDAVTAISF 29 (97)
Q Consensus 15 ~~~~gis~~v~G~tl 29 (97)
+..||+|.++.|..+
T Consensus 2 akefgipa~ia~~vl 16 (70)
T d1o82a_ 2 AKEFGIPAAVAGTVL 16 (70)
T ss_dssp HHHHCCCHHHHHHHH
T ss_pred chhhCCcHHHHHHHH
Confidence 678899999988764
No 3
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=11.45 E-value=37 Score=17.54 Aligned_cols=26 Identities=4% Similarity=-0.103 Sum_probs=19.0
Q ss_pred hhhhHHHHHHHHHHHhCCChhHHHHH
Q psy733 3 YTAFIGDLASHFGCSVGLKDAVTAIS 28 (97)
Q Consensus 3 ~~~~l~~~a~~i~~~~gis~~v~G~t 28 (97)
+.|+-..+-+.||+.+|+|...+-..
T Consensus 29 l~~~~~~s~~eIA~~lgis~~tv~~~ 54 (68)
T d1or7a1 29 LRELDGLSYEEIAAIMDCPVGTVRSR 54 (68)
T ss_dssp HHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHCcCHHHHHHH
Confidence 34555667889999999998766543
No 4
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.23 E-value=62 Score=16.72 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=11.9
Q ss_pred HHHHHHHHhCCChhHH
Q psy733 10 LASHFGCSVGLKDAVT 25 (97)
Q Consensus 10 ~a~~i~~~~gis~~v~ 25 (97)
+++.+|+.+|+|...+
T Consensus 21 s~~eLa~~l~vS~~ti 36 (63)
T d1biaa1 21 SGEQLGETLGMSRAAI 36 (63)
T ss_dssp CHHHHHHHHTSCHHHH
T ss_pred CHHHHHHHHCcCHHHH
Confidence 5678888888886543
No 5
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=10.82 E-value=27 Score=18.04 Aligned_cols=24 Identities=4% Similarity=-0.184 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHHhCCChhHHHH
Q psy733 4 TAFIGDLASHFGCSVGLKDAVTAI 27 (97)
Q Consensus 4 ~~~l~~~a~~i~~~~gis~~v~G~ 27 (97)
-|+-..+-..||+.+|+|+.-+.-
T Consensus 33 ~~~~~~s~~eIA~~lgis~~tv~~ 56 (71)
T d1rp3a2 33 IFYEELPAKEVAKILETSVSRVSQ 56 (71)
T ss_dssp HHTSCCCHHHHHHHTTSCHHHHHH
T ss_pred HHhHhCCHHHHHHHHCCCHHHHHH
Confidence 344455678899999999876654
No 6
>d1z67a1 a.259.1.1 (A:3-131) Hypothetical protein YidB {Shigella flexneri [TaxId: 623]}
Probab=10.65 E-value=88 Score=19.02 Aligned_cols=32 Identities=16% Similarity=0.347 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhhcCChHHHHHHH
Q psy733 9 DLASHFGCSVGLKDAVTAISFVALGTSVPDTFASK 43 (97)
Q Consensus 9 ~~a~~i~~~~gis~~v~G~tllA~gtSlPEl~~~~ 43 (97)
+-.+.+|.++|+++.-+.-. +...+|+++--+
T Consensus 71 d~l~~lA~q~Gl~~~~~~~~---LA~~LP~~Vd~l 102 (129)
T d1z67a1 71 NAVSDLGQKLGVDTSTASSL---LAEQLPKIIDAL 102 (129)
T ss_dssp HHHHHHHHHHTCCHHHHHHH---HHHHHHHHHHHT
T ss_pred HHHHHHHHHHCcCHHHHHHH---HHHHhHHHHhcc
Confidence 45788999999999877664 578899887765
No 7
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=9.03 E-value=88 Score=15.51 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=12.9
Q ss_pred HHHHHHHHhCCChhHHH
Q psy733 10 LASHFGCSVGLKDAVTA 26 (97)
Q Consensus 10 ~a~~i~~~~gis~~v~G 26 (97)
--..||..+|+++..+=
T Consensus 28 ~r~~LA~~lgL~~~qV~ 44 (53)
T d1p7ia_ 28 RRQQLSSELGLNEAQIK 44 (53)
T ss_dssp HHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHhCCChHHhh
Confidence 34678999999987663
No 8
>d1to2i_ d.40.1.1 (I:) Chymotrypsin inhibitor CI-2 {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=8.94 E-value=25 Score=19.20 Aligned_cols=7 Identities=29% Similarity=0.439 Sum_probs=4.8
Q ss_pred CChHHHH
Q psy733 34 TSVPDTF 40 (97)
Q Consensus 34 tSlPEl~ 40 (97)
+|.||++
T Consensus 3 ~sWPELV 9 (64)
T d1to2i_ 3 TEWPELV 9 (64)
T ss_dssp CBCGGGT
T ss_pred ccChhhc
Confidence 5777775
No 9
>d1yt3a2 a.60.8.3 (A:295-375) Ribonuclease D {Escherichia coli [TaxId: 562]}
Probab=8.71 E-value=1.1e+02 Score=16.61 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhCCChhHHHH
Q psy733 7 IGDLASHFGCSVGLKDAVTAI 27 (97)
Q Consensus 7 l~~~a~~i~~~~gis~~v~G~ 27 (97)
+-.....+|+..||++.+++-
T Consensus 16 lk~~v~~~Ae~~~IapelLas 36 (81)
T d1yt3a2 16 IKSLITDVSETHKISAELLAS 36 (81)
T ss_dssp HHHHHHHHHHHHTCCHHHHCC
T ss_pred HHHHHHHHHHHcCCCHHHhcC
Confidence 456678899999999888763
No 10
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=8.64 E-value=95 Score=15.58 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=11.4
Q ss_pred HHHHHHHHhCCChhHH
Q psy733 10 LASHFGCSVGLKDAVT 25 (97)
Q Consensus 10 ~a~~i~~~~gis~~v~ 25 (97)
+-..+|+++|+|+..+
T Consensus 19 s~~eiA~~l~ls~~~v 34 (60)
T d2cyya1 19 PLREISKITGLAESTI 34 (60)
T ss_dssp CHHHHHHHHCSCHHHH
T ss_pred CHHHHHHHHCcCHHHH
Confidence 3467888888887654
Done!