RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy733
(97 letters)
>gnl|CDD|233149 TIGR00845, caca, sodium/calcium exchanger 1. The Ca2+:Cation
Antiporter (CaCA) Family (TC 2.A.19)Proteins of the CaCA
family are found ubiquitously, having been identified in
animals, plants, yeast, archaea and widely divergent
bacteria.All of the characterized animal proteins
catalyze Ca2+:Na+ exchange although some also transport
K+. The NCX1 plasma membrane protein exchanges 3 Na+ for
1 Ca2+. The E. coli ChaA protein catalyzes Ca2+:H+
antiport but may also catalyze Na+:H+ antiport. All
remaining well-characterized members of the family
catalyze Ca2+:H+ exchange.This model is specific for the
eukaryotic sodium ion/calcium ion exchangers of the Caca
family [Transport and binding proteins, Other].
Length = 928
Score = 184 bits (470), Expect = 5e-56
Identities = 71/91 (78%), Positives = 82/91 (90%)
Query: 4 TAFIGDLASHFGCSVGLKDAVTAISFVALGTSVPDTFASKVSAIQDSTADNSVGNVTGSN 63
TAFIGDLASHFGC++GLKD+VTA+ FVALGTSVPDTFASKV+A QD AD S+GNVTGSN
Sbjct: 770 TAFIGDLASHFGCTIGLKDSVTAVVFVALGTSVPDTFASKVAATQDQYADASIGNVTGSN 829
Query: 64 AVNVFLGLGIAWSLAAIYHSLNGSYFYVDPG 94
AVNVFLG+G+AWS+AAIYH+ NG+ F V PG
Sbjct: 830 AVNVFLGIGVAWSIAAIYHAANGTQFKVSPG 860
Score = 25.5 bits (56), Expect = 5.1
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 22 DAVTAISFVALGTSVPDTFASKVSAI-QDSTA-DNSVGNVTGSNAVNVFLGLGI 73
+ V+ ++ +ALG+S P+ S + + A D + GS A N+F+ + I
Sbjct: 129 ETVSNLTLMALGSSAPEILLSVIEVCGHNFEAGDLGPSTIVGSAAFNMFIIIAI 182
>gnl|CDD|216653 pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein. This is a
family of sodium/calcium exchanger integral membrane
proteins. This family covers the integral membrane
regions of the proteins. Sodium/calcium exchangers
regulate intracellular Ca2+ concentrations in many
cells; cardiac myocytes, epithelial cells, neurons
retinal rod photoreceptors and smooth muscle cells.
Ca2+ is moved into or out of the cytosol depending on
Na+ concentration. In humans and rats there are 3
isoforms; NCX1 NCX2 and NCX3.
Length = 135
Score = 67.2 bits (165), Expect = 6e-16
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 4 TAFIGDLASHFGCSVGLKDAVTAISFVALGTSVPDTFASKVSAIQDSTADNSVGNVTGSN 63
+ D A +G+ V ++ +ALGTS+P+ F+S ++A++ + AD ++GNV GSN
Sbjct: 7 ADLLVDSAESIAEVLGISPTVIGLTLLALGTSLPELFSSIIAALKGN-ADLALGNVIGSN 65
Query: 64 AVNVFLGLGIAWSLAAIYHSLNGSYFYVD 92
N+ L LG++ ++ I + S +D
Sbjct: 66 LFNILLVLGLSALISPIGLKVLVSPLSLD 94
>gnl|CDD|223604 COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and
metabolism].
Length = 320
Score = 44.5 bits (106), Expect = 1e-06
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 9 DLASHFGCSVGLKDAVTAISFVALGTSVPDTFASKVSAIQDSTADNSVGNVTGSNAVNVF 68
D AS G+ + + ++ VA GTS+P+ S V+A+ + D +VGNV GSN N+
Sbjct: 31 DAASAISRRFGISELIIGLTIVAFGTSLPELAVSLVAALSGNP-DIAVGNVLGSNIFNIL 89
Query: 69 LGLGI-AWSLAAIYHSL 84
L LG+ A S
Sbjct: 90 LILGLAALIAPLKVDSD 106
Score = 39.5 bits (93), Expect = 6e-05
Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 19 GLKDAVTAISFVALGTSVPDTFASKVSAIQDSTADNSVGNVTGSNAVNVFLGLGIA 74
G+ + + ++ VA+GTS+P+ S + A + D +VGNV GSN N+ + LGI+
Sbjct: 206 GISELIIGLTIVAIGTSLPELVVS-IVAARKGEDDIAVGNVIGSNIFNILIVLGIS 260
>gnl|CDD|182684 PRK10734, PRK10734, putative calcium/sodium:proton antiporter;
Provisional.
Length = 325
Score = 44.3 bits (105), Expect = 1e-06
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 11 ASHFGCSVGLKDAVTAISFVALGTSVPDTFASKVSAIQDSTADNSVGNVTGSNAVNVFLG 70
AS + G+ + ++ V +GTS+P+ S V+A D +VG GSN N+ L
Sbjct: 26 ASILCRTFGIPPLIIGMTVVGIGTSLPEIIVS-VAASLHGQRDLAVGTALGSNITNILLI 84
Query: 71 LGIAWSLAAIYHSL 84
LG LAA+
Sbjct: 85 LG----LAALIRPF 94
Score = 32.3 bits (74), Expect = 0.018
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 10 LASHFGCSVGLKDAVTAISFVALGTSVPDTFASKVSAIQDSTADNSVGNVTGSNAVNVFL 69
LA++F S + ++ +A+GTS+P+ A+ ++ + D +VGN+ GSN N+ +
Sbjct: 200 LANYFAIS----ELTIGLTVIAIGTSLPE-LATAIAGARKGENDIAVGNIIGSNIFNIVI 254
Query: 70 GLGI 73
LG+
Sbjct: 255 VLGL 258
>gnl|CDD|232943 TIGR00367, TIGR00367, K+-dependent Na+/Ca+ exchanger
related-protein. This model models a family of
bacterial and archaeal proteins that is homologous,
except for lacking a central region of ~ 250 amino
acids and an N-terminal region of > 100 residues, to a
functionally proven potassium-dependent sodium-calcium
exchanger of the rat [Unknown function, General].
Length = 307
Score = 43.1 bits (102), Expect = 3e-06
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 9 DLASHFGCSVGLKDAVTAISFVALGTSVPDTFASKVSAIQDSTADNSVGNVTGSNAVNVF 68
+A H G S + ++ VA+GTS+P+ F S ++++ D VGNV GSN N+
Sbjct: 27 RIARHLGIS----PLIIGVTVVAIGTSLPELFTSLIASLMGQP-DIGVGNVIGSNIFNIL 81
Query: 69 LGLGIAWSLAAI 80
L LG++ + I
Sbjct: 82 LILGLSAIFSPI 93
Score = 38.8 bits (91), Expect = 1e-04
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 17 SVGLKDAVTAISFVALGTSVPDTFASKVSAIQDSTADNSVGNVTGSNAVNVFLGLGIAWS 76
+G+ + + ++ +A+GTS+P+ ++A + D +VGNV GSN N+ +GLG+
Sbjct: 199 ILGISEKIIGLTLLAIGTSLPE-LVVSLAAARKGLGDIAVGNVIGSNIFNILVGLGVPSL 257
Query: 77 LAAI 80
I
Sbjct: 258 FMPI 261
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 41.5 bits (97), Expect = 1e-05
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 11 ASHFGCSVGLKDAVTAISFVALGTSVPDTFASKVSAIQDSTADNSVGNVTGSNAVNVFLG 70
A G ++G+ + + ++ +A GTS+PD S + A + D +V + GSN ++ +G
Sbjct: 956 AHQVGETIGISEEIMGLTILAAGTSIPDLITSVIVA-RKGLGDMAVSSSVGSNIFDITVG 1014
Query: 71 LGIAWSLAAIYHSL 84
L + W L ++ + L
Sbjct: 1015 LPVPWLLFSLINGL 1028
Score = 26.9 bits (59), Expect = 1.7
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 24 VTAISFVALGTSVPDTFASKVSAIQDSTADNSVGNVTGSNAVNVFLGLG 72
V +F+A G S P+ F S + + S ++ +G + GS N+ +G
Sbjct: 496 VAGATFMAAGGSAPELFTSLI-GVFISHSNVGIGTIVGSAVFNILFVIG 543
>gnl|CDD|163337 TIGR03586, PseI, pseudaminic acid synthase. Members of this family
are included within the larger pfam03102 (NeuB) family.
NeuB itself (TIGR03569) is involved in the biosynthesis
of neuraminic acid by the condensation of
phosphoenolpyruvate (PEP) with N-Acetyl-D-Mannosamine.
In an analagous reaction, this enzyme, PseI , condenses
PEP with 6-deoxy-beta-L-AltNAc4NAc to generate
pseudaminic acid.
Length = 327
Score = 30.7 bits (70), Expect = 0.070
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 7 IGDLASHFGCSVGLKD----AVTAISFVALGTSV 36
I DLA F VGL D + ++ VALG V
Sbjct: 185 IPDLAERFNVPVGLSDHTLGILAPVAAVALGACV 218
>gnl|CDD|106966 PHA00657, PHA00657, crystallin beta/gamma motif-containing protein.
Length = 2052
Score = 30.5 bits (68), Expect = 0.12
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 21 KDAVTAISFVALGTSVPDTFASKVSAIQDSTADNSVGNVTGSNAVNVFLGLGIAWSLAA 79
+D + AI F LG + P T A + A ++V N+TG +V LG + + ++A
Sbjct: 84 QDTIGAIDFDTLGKTSPATAALLADVEKAKIAHDNVDNMTGIESVLSSLGTAVKYLVSA 142
>gnl|CDD|237593 PRK14041, PRK14041, oxaloacetate decarboxylase; Provisional.
Length = 467
Score = 28.2 bits (63), Expect = 0.62
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 2 YYTAFIGDLASHFGCSVGLKDAVTAISFVALGTSVPDTFASKVSAIQDSTADNSV 56
+ T + LA G TAIS ++GTS P F S A +++ +
Sbjct: 204 HCTTGLASLAYLAAVEAGADMFDTAISPFSMGTSQP-PFESMYYAFRENGKETDF 257
>gnl|CDD|183446 PRK12331, PRK12331, oxaloacetate decarboxylase; Provisional.
Length = 448
Score = 27.7 bits (62), Expect = 0.75
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 25 TAISFVALGTSVPDTFASKVSAIQDSTAD 53
TAIS A GTS P T S V+A+QD D
Sbjct: 228 TAISPFAGGTSQPAT-ESMVAALQDLGYD 255
>gnl|CDD|217370 pfam03102, NeuB, NeuB family. NeuB is the prokaryotic
N-acetylneuraminic acid (Neu5Ac) synthase. It catalyzes
the direct formation of Neu5Ac (the most common sialic
acid) by condensation of phosphoenolpyruvate (PEP) and
N-acetylmannosamine (ManNAc). This reaction has only
been observed in prokaryotes; eukaryotes synthesise the
9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P
instead of ManNAc. Such eukaryotic enzymes are not
present in this family. This family also contains SpsE
spore coat polysaccharide biosynthesis proteins.
Length = 240
Score = 26.6 bits (60), Expect = 1.8
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 7 IGDLASHFGCSVGLKD----AVTAISFVALGTSV 36
I L FG VG D I+ VALG SV
Sbjct: 163 IPTLKEAFGVPVGYSDHTLGIEAPIAAVALGASV 196
>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity
(type V). These P-type ATPases form a distinct clade
but the substrate of their pumping activity has yet to
be determined. This clade has been designated type V in.
Length = 1054
Score = 26.9 bits (60), Expect = 1.8
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 2 YYTAFIGDLASHFGCSVGLKDAVTAISFVALGTSVPDTFASKVSAIQDSTADNSVGNVTG 61
Y GD A+ G LK A IS SV F SK+++I G
Sbjct: 802 YTVGMCGDGANDCG---ALKQADVGISLSEAEASVAAPFTSKLASISCVPNVIREGRCAL 858
Query: 62 SNAVNVFLGLG 72
+ +F +
Sbjct: 859 VTSFQMFKYMA 869
>gnl|CDD|197477 smart00027, EH, Eps15 homology domain. Pair of EF hand motifs
that recognise proteins containing Asn-Pro-Phe (NPF)
sequences.
Length = 96
Score = 26.1 bits (58), Expect = 1.9
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 7/43 (16%)
Query: 43 KVSAIQDSTADNSVGNVTGSNAVNVFLGLGI-------AWSLA 78
K I S N G VTG+ A + L G+ W+LA
Sbjct: 11 KYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLA 53
>gnl|CDD|225000 COG2089, SpsE, Sialic acid synthase [Cell envelope biogenesis,
outer membrane].
Length = 347
Score = 25.0 bits (55), Expect = 8.1
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 7 IGDLASHFGCSVGLKD----AVTAISFVALGTSV 36
I LA F VGL D + ++ VALG SV
Sbjct: 198 IPKLAEAFNAIVGLSDHTLGILAPLAAVALGASV 231
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.391
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,755,078
Number of extensions: 370939
Number of successful extensions: 391
Number of sequences better than 10.0: 1
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 41
Length of query: 97
Length of database: 10,937,602
Length adjustment: 64
Effective length of query: 33
Effective length of database: 8,098,946
Effective search space: 267265218
Effective search space used: 267265218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)