RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy733
         (97 letters)



>3v5u_A Uncharacterized membrane protein MJ0091; lipid cubic phase, cation
           protein complex, sodium,calcium EX membrane protein;
           HET: OLC MYS 1PE; 1.90A {Methanocaldococcus jannaschii}
           PDB: 3v5s_A*
          Length = 320

 Score = 46.8 bits (112), Expect = 1e-07
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 9   DLASHFGCSVGLKDAVTAISFVALGTSVPDTFASKVSAIQDSTADNSVGNVTGSNAVNVF 68
            +A     S    D V   + VA GTS+P+   S  +A ++      +GNV GSN  ++ 
Sbjct: 188 KIALALDIS----DKVIGFTLVAFGTSLPELMVSLAAAKRNL-GGMVLGNVIGSNIADIG 242

Query: 69  LGLGIA 74
             L + 
Sbjct: 243 GALAVG 248



 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 11 ASHFGCSVGLKDAVTAISFVALGTSVPDTFASKVSAIQDSTADNSVGNVTGSNAVNVFLG 70
          +        + + V   + +A+GTS+P+   S  ++   +    S+GN  GS   N+ L 
Sbjct: 27 SERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAP-GISIGNAIGSCICNIGLV 85

Query: 71 LGIA 74
          LG++
Sbjct: 86 LGLS 89


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.8 bits (69), Expect = 0.051
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 8   GDLASHF-GCSVGLKDAVTAISFVALGTSVPDTFASKVSAIQ 48
           G+L S+  G +   +  VTA+  +A   S    F S   AI 
Sbjct: 261 GELRSYLKGATGHSQGLVTAV-AIAETDSWESFFVSVRKAIT 301


>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel,
           substrate channeling; HET: NAD; 1.70A {Pseudomonas SP}
           SCOP: a.5.7.1 c.1.10.5
          Length = 345

 Score = 26.5 bits (59), Expect = 1.2
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 11/61 (18%)

Query: 33  GTSVPDTFASKVSAIQDSTADNSVGNVTGSNAVNVFLGLGIAWSLAAIYH-------SLN 85
           G    +    ++ A +      +   +   +  N  L LG+A S+ A+         SL 
Sbjct: 173 GAMSMNDIRDRMRAFKAVLKPETQVGMHAHH--N--LSLGVANSIVAVEEGCDRVDASLA 228

Query: 86  G 86
           G
Sbjct: 229 G 229


>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta,
          cobalamin biosynthesis, metal-bindin parallel beta
          sheet; HET: SIR; 1.90A {Salmonella enterica} PDB:
          1qgo_A*
          Length = 264

 Score = 24.5 bits (53), Expect = 7.1
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 25 TAISFVALGTSVPDTFASKVSAIQD 49
           A+  V+ GTS  DT    + A + 
Sbjct: 3  KALLVVSFGTSYHDTCEKNIVACER 27


>3tow_A Multivesicular BODY subunit 12B; beta prism, membrane binding
          domain, negatively charged MEMB protein transport;
          1.34A {Homo sapiens}
          Length = 152

 Score = 24.3 bits (52), Expect = 8.2
 Identities = 8/44 (18%), Positives = 12/44 (27%)

Query: 22 DAVTAISFVALGTSVPDTFASKVSAIQDSTADNSVGNVTGSNAV 65
          D +T +  VA     P  +           AD     +  S   
Sbjct: 2  DPITGVGVVASRNRAPTGYDVVAQTADGVDADLWKDGLFKSKVT 45


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0728    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,429,391
Number of extensions: 69955
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 14
Length of query: 97
Length of database: 6,701,793
Length adjustment: 63
Effective length of query: 34
Effective length of database: 4,942,770
Effective search space: 168054180
Effective search space used: 168054180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)