BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7331
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR PHOSPHATASE
COMPLEXED With Zn2+
Length = 304
Score = 134 bits (338), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 87/118 (73%)
Query: 1 MGAYLSQPITKKESTNHEGSNLTCGASSMQGWRIYQEDAHNVIIDFDENKSLFAVYDGHG 60
+GAYLS+P+T K+S++ L G+SSMQGWRI QEDAHN I++FD+ S FAVYDGHG
Sbjct: 2 LGAYLSEPLTTKDSSDESNEFLASGSSSMQGWRISQEDAHNCILNFDDQCSFFAVYDGHG 61
Query: 61 GSEVAVYTSQHLPEFIKKTEQFKKGNYKQALIDAFMEFDESLIKDEVMAILKTLKKEN 118
G+EVA Y S HLP F+K E + + +++AL +AF+ FD +L++++V+ LK L ++
Sbjct: 62 GAEVAQYCSLHLPTFLKTVEAYGRKEFEKALKEAFLGFDATLLQEKVIEELKVLSGDS 119
>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 3 Mm Of Mn2+
pdb|3FXK|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 10 Mm Of Mn2+
pdb|3FXL|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 1 Mm Of Mn2+
pdb|3FXM|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Citrate At 10 Mm Of Mn2+
pdb|3FXO|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a (Ppm1a)
Bound With Phosphate At 1 Mm Of Mn2+
Length = 390
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 62/112 (55%), Gaps = 10/112 (8%)
Query: 1 MGAYLSQPITKKESTNHEGSNLTCGASSMQGWRIYQEDAHNVIIDFD---ENKSLFAVYD 57
MGA+L +P +K + +G+ L G SSMQGWR+ EDAH +I E+ S FAVYD
Sbjct: 1 MGAFLDKPKMEKHNAQGQGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSGLESWSFFAVYD 60
Query: 58 GHGGSEVAVYTSQHLPEFIKKTEQFKKG-------NYKQALIDAFMEFDESL 102
GH GS+VA Y +HL + I + FK N K + F+E DE +
Sbjct: 61 GHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHM 112
>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE
PHOSPHATASE 2C AT 2 A Resolution
Length = 382
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 62/112 (55%), Gaps = 10/112 (8%)
Query: 1 MGAYLSQPITKKESTNHEGSNLTCGASSMQGWRIYQEDAHNVIIDFD---ENKSLFAVYD 57
MGA+L +P +K + +G+ L G SSMQGWR+ EDAH +I E+ S FAVYD
Sbjct: 1 MGAFLDKPKMEKHNAQGQGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSGLESWSFFAVYD 60
Query: 58 GHGGSEVAVYTSQHLPEFIKKTEQFKKG-------NYKQALIDAFMEFDESL 102
GH GS+VA Y +HL + I + FK N K + F+E DE +
Sbjct: 61 GHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHM 112
>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
pdb|2P8E|B Chain B, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
Domain Of Human Ppm1b
Length = 307
Score = 85.5 bits (210), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 61/115 (53%), Gaps = 15/115 (13%)
Query: 1 MGAYLSQPITKKESTNHEGSNLTCGASSMQGWRIYQEDAHNVIIDFD---ENKSLFAVYD 57
+GA+L +P T+K + + G+ L G SSMQGWR+ EDAH ++ E+ S FAVYD
Sbjct: 3 LGAFLDKPKTEKHNAHGAGNGLRYGLSSMQGWRVEMEDAHTAVVGIPHGLEDWSFFAVYD 62
Query: 58 GHGGSEVAVYTSQHLPEFIKKTEQFKKG------------NYKQALIDAFMEFDE 100
GH GS VA Y S HL E I E F+ N K + F++ DE
Sbjct: 63 GHAGSRVANYCSTHLLEHITTNEDFRAAGKSGSALELSVENVKNGIRTGFLKIDE 117
>pdb|3NMV|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Abi2
pdb|3UJK|A Chain A, Crystal Structure Of Protein Phosphatase Abi2
pdb|3UJL|B Chain B, Crystal Structure Of Abscisic Acid Bound Pyl2 In Complex
With Type 2c Protein Phosphatase Abi2
Length = 324
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 29/107 (27%)
Query: 25 GASSMQGWRIYQEDAHNVIIDFDENKS-------------------LFAVYDGHGGSEVA 65
G +S+ G R ED+ + I F + S F VYDGHGGS+VA
Sbjct: 15 GVTSICGRRPEMEDSVSTIPRFLQVSSSSLLDGRVTNGFNPHLSAHFFGVYDGHGGSQVA 74
Query: 66 VYTSQ--HLP---EFIKKTEQFKKGN-----YKQALIDAFMEFDESL 102
Y + HL E +K+ +F G+ +K+AL ++FM D +
Sbjct: 75 NYCRERMHLALTEEIVKEKPEFCDGDTWQEKWKKALFNSFMRVDSEI 121
>pdb|3KDJ|B Chain B, Complex Structure Of (+)-Aba-Bound Pyl1 And Abi1
Length = 316
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 25/103 (24%)
Query: 25 GASSMQGWRIYQEDAHNVIIDFDENKS---------------LFAVYDGHGGSEVAVYTS 69
G +S+ G R EDA + I F ++ S F VYDGHGGS+VA Y
Sbjct: 12 GFTSICGRRPEMEDAVSTIPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGGSQVANYCR 71
Query: 70 Q--HLP---EFIKKTEQFKKGN-----YKQALIDAFMEFDESL 102
+ HL E K+ G+ +K+AL ++F+ D +
Sbjct: 72 ERMHLALAEEIAKEKPMLSDGDTWLEKWKKALFNSFLRVDSEI 114
>pdb|3NMN|B Chain B, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
pdb|3NMN|D Chain D, Crystal Structure Of Pyrabactin-Bound Abscisic Acid
Receptor Pyl1 In Complex With Type 2c Protein
Phosphatase Abi1
Length = 319
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 25/103 (24%)
Query: 25 GASSMQGWRIYQEDAHNVIIDFDENKS---------------LFAVYDGHGGSEVAVYTS 69
G +S+ G R EDA + I F ++ S F VYDGHGGS+VA Y
Sbjct: 15 GFTSICGRRPEMEDAVSTIPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGGSQVANYCR 74
Query: 70 Q--HLP---EFIKKTEQFKKGN-----YKQALIDAFMEFDESL 102
+ HL E K+ G+ +K+AL ++F+ D +
Sbjct: 75 ERMHLALAEEIAKEKPMLCDGDTWLEKWKKALFNSFLRVDSEI 117
>pdb|3JRQ|A Chain A, Crystal Structure Of (+)-aba-bound Pyl1 In Complex With
Abi1
Length = 326
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 25/103 (24%)
Query: 25 GASSMQGWRIYQEDAHNVIIDFDENKS---------------LFAVYDGHGGSEVAVYTS 69
G +S+ G R EDA + I F ++ S F VYDGHGGS+VA Y
Sbjct: 27 GFTSICGRRPEMEDAVSTIPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGGSQVANYCR 86
Query: 70 Q--HLP---EFIKKTEQFKKGN-----YKQALIDAFMEFDESL 102
+ HL E K+ G+ +K+AL ++F+ D +
Sbjct: 87 ERMHLALAEEIAKEKPMLCDGDTWLEKWKKALFNSFLRVDSEI 129
>pdb|2IQ1|A Chain A, Crystal Structure Of Human Ppm1k
Length = 274
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 25 GASSMQGWRIYQEDAHNVIIDFDENKSLFAVYDGHGGSEVAVYTSQHLPEFIKKTEQFKK 84
G +S G R ED + DE FAVYDGHGG A + H+ + I K+
Sbjct: 11 GCASQIGKRKENEDRFDFAQLTDE-VLYFAVYDGHGGPAAADFCHTHMEKCIMDLLP-KE 68
Query: 85 GNYKQALIDAFMEFDESL 102
N + L AF+E D++
Sbjct: 69 KNLETLLTLAFLEIDKAF 86
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 25 GASSMQGWRIYQEDAHNVIIDFDENKSLFAVYDGHGGSEVAVYTSQHLPEFIKKTEQFKK 84
G +S G R ED + DE FAVYDGHGG A + H+ + I K+
Sbjct: 125 GCASQIGKRKENEDRFDFAQLTDE-VLYFAVYDGHGGPAAADFCHTHMEKCIMDLLP-KE 182
Query: 85 GNYKQALIDAFMEFDESL 102
N + L AF+E D++
Sbjct: 183 KNLETLLTLAFLEIDKAF 200
>pdb|2ISN|A Chain A, Crystal Structure Of A Phosphatase From A Pathogenic
Strain Toxoplasma Gondii
pdb|2ISN|B Chain B, Crystal Structure Of A Phosphatase From A Pathogenic
Strain Toxoplasma Gondii
Length = 364
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 23 TCGASSMQGWRIYQEDAHNVIIDFD----ENKSLFAVYDGHGGSEVAVYTSQHLPEFIKK 78
T A++ G R EDA +++ N + AV+DGH G + Y ++H + + K
Sbjct: 14 TTVAATXLGRRPTDEDA--ILVSAPATSRPNVRIKAVFDGHAGEATSQYCAKHAAKHLGK 71
Query: 79 TEQFKKGNYKQALIDAFMEFDESLIK 104
+F K+A + D +I+
Sbjct: 72 LSEFTFAEVKKAC----LSLDAEIIR 93
>pdb|4DS8|B Chain B, Complex Structure Of Abscisic Acid Receptor
Pyl3-(+)-Aba-Hab1 In The Presence Of Mn2+
Length = 343
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 52 LFAVYDGHGGSEVAVYTSQHL 72
F VYDGHGG +VA Y L
Sbjct: 70 FFGVYDGHGGHKVADYCRDRL 90
>pdb|3QN1|B Chain B, Crystal Structure Of The Pyr1 Abscisic Acid Receptor In
Complex With The Hab1 Type 2c Phosphatase Catalytic
Domain
pdb|3ZVU|B Chain B, Structure Of The Pyr1 His60pro Mutant In Complex With
The Hab1 Phosphatase And Abscisic Acid
Length = 337
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 52 LFAVYDGHGGSEVAVYTSQHL 72
F VYDGHGG +VA Y L
Sbjct: 64 FFGVYDGHGGHKVADYCRDRL 84
>pdb|3NMT|B Chain B, Crystal Structure Of Pyrabactin Bound Abscisic Acid
Receptor Pyl2 Mutant A93f In Complex With Type 2c
Protein Phosphatase Hab1
Length = 341
Score = 30.4 bits (67), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 52 LFAVYDGHGGSEVAVYTSQHL 72
F VYDGHGG +VA Y L
Sbjct: 68 FFGVYDGHGGHKVADYCRDRL 88
>pdb|3UJG|B Chain B, Crystal Structure Of Snrk2.6 In Complex With Hab1
Length = 350
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 52 LFAVYDGHGGSEVAVYTSQHL 72
F VYDGHGG +VA Y L
Sbjct: 77 FFGVYDGHGGHKVADYCRDRL 97
>pdb|3RT0|A Chain A, Crystal Structure Of Pyl10-Hab1 Complex In The Absence
Of Abscisic Acid (Aba)
pdb|3RT0|B Chain B, Crystal Structure Of Pyl10-Hab1 Complex In The Absence
Of Abscisic Acid (Aba)
Length = 340
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 52 LFAVYDGHGGSEVAVYTSQHL 72
F VYDGHGG +VA Y L
Sbjct: 67 FFGVYDGHGGHKVADYCRDRL 87
>pdb|3KB3|B Chain B, Crystal Structure Of Abscisic Acid-Bound Pyl2 In Complex
With Hab1
Length = 321
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 52 LFAVYDGHGGSEVAVYTSQHL 72
F VYDGHGG +VA Y L
Sbjct: 53 FFGVYDGHGGHKVADYCRDRL 73
>pdb|1VB5|A Chain A, Crystal Structure Analysis Of The Pyrococcus Horikoshii
Ot3 Translation Initiation Factor Eif-2b
pdb|1VB5|B Chain B, Crystal Structure Analysis Of The Pyrococcus Horikoshii
Ot3 Translation Initiation Factor Eif-2b
Length = 276
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 83 KKGNYKQALIDAFMEFDESLIKDEVMAILKTLKKENEVMAILKTLKKEITVS 134
KKG +A + E DESL++D +M + + + K N MA L L + I V+
Sbjct: 26 KKG--AEAFLTLAEELDESLLEDAIMELREEVVKVNPSMASLYNLARFIPVT 75
>pdb|2QUH|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
pdb|2QUI|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUI|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Tryptophanamide And Atp
pdb|2QUJ|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
pdb|2QUK|A Chain A, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Atp(Putative)
pdb|2QUH|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trp
Length = 477
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 41 NVIIDFDENKSLFAVYDGHGGSEVAVYTSQHLPEFI 76
N ++D ENK F +Y G G S A++ HL FI
Sbjct: 144 NQVLDAYENKKPFYLYTGRGPSSEAMHVG-HLIPFI 178
>pdb|3AL0|C Chain C, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 592
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 12/83 (14%)
Query: 34 IYQEDAHNVIIDFDENKSLFAVYDGHGGSEVAVYTSQHLPEFIKK----TEQFK----KG 85
IY+E A ++ ++ ++ + VYD S+ T ++ E+ +K T +FK K
Sbjct: 216 IYREYAEKLV---EDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKT 272
Query: 86 NYKQALIDAFMEFDESLIKDEVM 108
+++ L+ +MEFD S ++D ++
Sbjct: 273 SFED-LLKGYMEFDNSTLEDFII 294
>pdb|1O5T|A Chain A, Crystal Structure Of The Aminoacylation Catalytic
Fragment Of Human Tryptophanyl-Trna Synthetase
Length = 378
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 41 NVIIDFDENKSLFAVYDGHGGSEVAVYTSQHLP 73
N ++D ENK F +Y G G S A++ +P
Sbjct: 51 NQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIP 83
>pdb|2QUJ|B Chain B, Crystal Structures Of Human Tryptophanyl-Trna Synthetase
In Complex With Trpamp
Length = 384
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 41 NVIIDFDENKSLFAVYDGHGGSEVAVYTSQHLP 73
N ++D ENK F +Y G G S A++ +P
Sbjct: 51 NQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIP 83
>pdb|2AKE|A Chain A, Structure Of Human Tryptophanyl-Trna Synthetase In
Complex With Trna(Trp)
pdb|2DR2|A Chain A, Structure Of Human Tryptophanyl-trna Synthetase In
Complex With Trna(trp)
Length = 384
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 41 NVIIDFDENKSLFAVYDGHGGSEVAVYTSQHLP 73
N ++D ENK F +Y G G S A++ +P
Sbjct: 51 NQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIP 83
>pdb|1ULH|A Chain A, A Short Peptide Insertion Crucial For Angiostatic
Activity Of Human Tryptophanyl-Trna Synthetase
pdb|1ULH|B Chain B, A Short Peptide Insertion Crucial For Angiostatic
Activity Of Human Tryptophanyl-Trna Synthetase
Length = 390
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 41 NVIIDFDENKSLFAVYDGHGGSEVAVYTSQHLP 73
N ++D ENK F +Y G G S A++ +P
Sbjct: 63 NQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIP 95
>pdb|1NMB|N Chain N, The Structure Of A Complex Between The Nc10 Antibody And
Influenza Virus Neuraminidase And Comparison With The
Overlapping Binding Site Of The Nc41 Antibody
Length = 470
Score = 25.8 bits (55), Expect = 7.5, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 9 ITKKESTNHEGSNLTCGASSMQGWRIYQED 38
I +E + E +NLT G ++ W IY +D
Sbjct: 75 IQVEERASREFNNLTKGLCTINSWHIYGKD 104
>pdb|1R6U|A Chain A, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
pdb|1R6U|B Chain B, Crystal Structure Of An Active Fragment Of Human
Tryptophanyl-Trna Synthetase With Cytokine Activity
Length = 437
Score = 25.8 bits (55), Expect = 9.1, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 41 NVIIDFDENKSLFAVYDGHGGSEVAVYTSQHLPEFIKK 78
N ++D ENK F +Y G G S A + +P K
Sbjct: 97 NQVLDAYENKKPFYLYTGRGPSSEAXHVGHLIPFIFTK 134
>pdb|1R6T|A Chain A, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
pdb|1R6T|B Chain B, Crystal Structure Of Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 25.8 bits (55), Expect = 9.1, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 41 NVIIDFDENKSLFAVYDGHGGSEVAVYTSQHLPEFIKK 78
N ++D ENK F +Y G G S A + +P K
Sbjct: 144 NQVLDAYENKKPFYLYTGRGPSSEAXHVGHLIPFIFTK 181
>pdb|2AZX|A Chain A, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
pdb|2AZX|B Chain B, Charged And Uncharged Trnas Adopt Distinct Conformations
When Complexed With Human Tryptophanyl-Trna Synthetase
Length = 477
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 41 NVIIDFDENKSLFAVYDGHGGSEVAVYTSQHLPEFIKK 78
N ++D ENK F +Y G G S A + +P K
Sbjct: 144 NQVLDAYENKKPFYLYTGRGPSSEAXHVGHLIPFIFTK 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,978,354
Number of Sequences: 62578
Number of extensions: 155959
Number of successful extensions: 390
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 46
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 46 (22.3 bits)