Query psy7331
Match_columns 139
No_of_seqs 191 out of 1077
Neff 8.5
Searched_HMMs 46136
Date Sat Aug 17 00:04:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0697|consensus 100.0 4.3E-31 9.3E-36 195.7 10.3 136 1-138 1-146 (379)
2 KOG0699|consensus 100.0 4.5E-30 9.9E-35 196.2 6.5 116 1-116 1-116 (542)
3 PTZ00224 protein phosphatase 2 99.9 3.2E-26 6.9E-31 179.7 14.9 126 1-138 1-126 (381)
4 PLN03145 Protein phosphatase 2 99.9 1.2E-24 2.7E-29 170.0 13.9 116 19-138 62-187 (365)
5 KOG0698|consensus 99.9 2.1E-23 4.7E-28 161.5 14.1 112 23-138 41-162 (330)
6 PF00481 PP2C: Protein phospha 99.9 7E-24 1.5E-28 158.5 10.2 113 23-138 1-120 (254)
7 COG0631 PTC1 Serine/threonine 99.8 1.1E-17 2.4E-22 125.9 12.4 116 21-138 7-129 (262)
8 KOG0700|consensus 99.8 9.3E-18 2E-22 130.2 10.6 102 35-138 84-222 (390)
9 smart00332 PP2Cc Serine/threon 99.7 6.8E-17 1.5E-21 119.7 14.7 117 20-138 4-123 (255)
10 cd00143 PP2Cc Serine/threonine 99.7 5.2E-17 1.1E-21 119.9 13.3 114 23-138 2-120 (254)
11 PRK14559 putative protein seri 99.7 1.4E-16 3.1E-21 131.9 13.2 115 21-138 374-505 (645)
12 KOG1323|consensus 99.3 3.6E-11 7.7E-16 92.2 8.9 86 49-138 143-267 (493)
13 PF13672 PP2C_2: Protein phosp 98.9 1.4E-08 3E-13 73.6 10.4 108 27-138 3-118 (212)
14 smart00331 PP2C_SIG Sigma fact 98.7 2.3E-07 4.9E-12 66.3 10.4 94 34-138 15-108 (193)
15 KOG1379|consensus 98.4 2.5E-06 5.4E-11 65.2 9.7 94 35-138 90-190 (330)
16 KOG0618|consensus 96.7 0.0022 4.8E-08 55.7 4.6 98 21-125 521-619 (1081)
17 TIGR02865 spore_II_E stage II 95.0 0.39 8.4E-06 41.7 10.7 96 31-137 562-657 (764)
18 PF07228 SpoIIE: Stage II spor 94.9 0.66 1.4E-05 32.6 10.2 81 48-138 2-83 (193)
19 KOG0699|consensus 93.9 0.063 1.4E-06 42.6 3.1 24 113-138 328-351 (542)
20 PF05785 CNF1: Rho-activating 75.0 4.7 0.0001 30.9 3.7 23 114-139 131-153 (281)
21 PLN02388 phosphopantetheine ad 65.6 3.7 7.9E-05 29.4 1.3 17 48-64 20-37 (177)
22 PF06574 FAD_syn: FAD syntheta 51.2 4.3 9.4E-05 28.3 -0.3 15 49-63 7-22 (157)
23 TIGR01518 g3p_cytidyltrns glyc 49.6 8.2 0.00018 25.5 0.8 13 52-64 3-16 (125)
24 PRK10693 response regulator of 48.2 1.2E+02 0.0026 23.1 8.7 37 92-134 208-244 (303)
25 cd02171 G3P_Cytidylyltransfera 47.9 12 0.00026 24.7 1.5 13 51-63 5-18 (129)
26 COG0196 RibF FAD synthase [Coe 46.2 11 0.00024 29.3 1.2 16 48-63 16-32 (304)
27 PRK07143 hypothetical protein; 43.8 8.9 0.00019 29.4 0.3 15 50-64 18-33 (279)
28 TIGR00067 glut_race glutamate 41.0 19 0.00041 27.0 1.7 23 53-75 1-24 (251)
29 cd02039 cytidylyltransferase_l 38.6 28 0.00061 22.7 2.2 22 51-72 3-26 (143)
30 TIGR02199 rfaE_dom_II rfaE bif 37.5 15 0.00032 25.1 0.6 15 50-64 14-29 (144)
31 COG3092 Uncharacterized protei 37.4 27 0.00059 23.7 1.8 21 85-105 128-148 (149)
32 PRK00865 glutamate racemase; P 35.8 30 0.00066 25.9 2.2 24 52-75 7-31 (261)
33 TIGR00083 ribF riboflavin kina 35.0 16 0.00036 28.0 0.6 12 52-63 3-15 (288)
34 COG0796 MurI Glutamate racemas 34.9 37 0.0008 26.0 2.5 24 52-75 7-31 (269)
35 PF04217 DUF412: Protein of un 34.8 38 0.00082 23.4 2.3 19 86-104 124-142 (143)
36 cd02172 RfaE_N N-terminal doma 34.4 19 0.00042 24.5 0.8 15 50-64 7-22 (144)
37 cd02170 cytidylyltransferase c 33.6 20 0.00043 23.8 0.8 13 51-63 5-18 (136)
38 PRK05627 bifunctional riboflav 30.4 26 0.00057 27.2 1.0 16 49-64 15-31 (305)
39 TIGR00125 cyt_tran_rel cytidyl 29.2 41 0.00088 19.0 1.5 21 51-71 3-25 (66)
40 KOG4530|consensus 29.1 75 0.0016 22.6 3.0 24 49-72 119-142 (199)
41 PF14808 TMEM164: TMEM164 fami 28.4 26 0.00056 26.6 0.7 16 56-71 13-28 (252)
42 COG5003 Mu-like prophage prote 28.0 23 0.00051 24.4 0.4 12 128-139 43-54 (151)
43 PF07494 Reg_prop: Two compone 27.8 73 0.0016 14.5 2.7 16 119-134 6-21 (24)
44 cd02064 FAD_synthetase_N FAD s 27.3 30 0.00065 24.4 0.8 13 51-63 3-16 (180)
45 PF06628 Catalase-rel: Catalas 26.1 1.5E+02 0.0032 17.4 3.9 38 68-105 24-62 (68)
46 PF08252 Leader_CPA1: arg-2/CP 25.5 77 0.0017 14.8 1.7 14 63-76 9-22 (24)
47 PRK01816 hypothetical protein; 25.5 53 0.0012 22.7 1.7 20 86-105 123-142 (143)
48 KOG4398|consensus 24.8 29 0.00062 26.8 0.4 25 54-78 135-173 (359)
49 PF13501 SoxY: Sulfur oxidatio 24.6 1.3E+02 0.0029 19.6 3.5 21 114-134 80-100 (111)
50 PF12953 DUF3842: Domain of un 23.8 68 0.0015 21.8 2.0 22 53-74 2-26 (131)
51 PF11760 CbiG_N: Cobalamin syn 21.0 2.2E+02 0.0048 17.7 4.9 39 33-72 33-73 (84)
52 PF01693 Cauli_VI: Caulimoviru 20.4 75 0.0016 16.9 1.4 9 52-60 2-10 (44)
53 PF09369 DUF1998: Domain of un 20.1 1.8E+02 0.0039 17.5 3.3 38 49-99 34-72 (84)
No 1
>KOG0697|consensus
Probab=99.97 E-value=4.3e-31 Score=195.73 Aligned_cols=136 Identities=35% Similarity=0.558 Sum_probs=120.2
Q ss_pred CCCCCCCCceeeeeeecCCCceEEEEEeccccCCCCcceEEeeeecC---CCeeEEEEEeCCCchHHHHHHHHHhHHHHH
Q psy7331 1 MGAYLSQPITKKESTNHEGSNLTCGASSMQGWRIYQEDAHNVIIDFD---ENKSLFAVYDGHGGSEVAVYTSQHLPEFIK 77 (139)
Q Consensus 1 m~~~l~~p~~~~~~~~~~~~~~~~g~~~~~G~R~~mED~~~v~~~~~---~~~~~fgVfDGHgG~~~a~~~~~~l~~~l~ 77 (139)
||.+|.||.|+|....++.+.+.||.+||||||-.|||+|.....+. .+|+||+|||||.|+.+|++|+++|...|.
T Consensus 1 MGaFLdKPkteKhn~~G~GNglryg~SSMQGWR~eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~ 80 (379)
T KOG0697|consen 1 MGAFLDKPKTEKHNAEGEGNGLRYGVSSMQGWRVEMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHII 80 (379)
T ss_pred CCccccCcccccccccCcCCceeeeeccccchhhhhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999998876553 689999999999999999999999999997
Q ss_pred hccccCc----c---cHHHHHHHHHHHHHHHhhhhhHhhhhccCCCCeEEEEEEEcCCCeEEEEEeec
Q psy7331 78 KTEQFKK----G---NYKQALIDAFMEFDESLIKDEVMAILKTLKKENEVMAILKTLKKEITVSYFTK 138 (139)
Q Consensus 78 ~~~~~~~----~---~~~~al~~af~~~d~~l~~~~~~~~~~~~~GsTa~v~li~~~~~~l~VA~~~~ 138 (139)
...+|.. . ++++-|+..|+++|+.++.......-.+.+||||++++|. ...+|++..|+
T Consensus 81 sse~F~~~~k~gsv~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vs--p~h~y~~NcGD 146 (379)
T KOG0697|consen 81 SSEEFRGMTKNGSVENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVS--PTHIYIINCGD 146 (379)
T ss_pred hhHHHhhhccCCcHHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEec--CceEEEEecCc
Confidence 7655542 3 7889999999999999998765544455699999999995 79999988764
No 2
>KOG0699|consensus
Probab=99.96 E-value=4.5e-30 Score=196.18 Aligned_cols=116 Identities=51% Similarity=0.899 Sum_probs=109.2
Q ss_pred CCCCCCCCceeeeeeecCCCceEEEEEeccccCCCCcceEEeeeecCCCeeEEEEEeCCCchHHHHHHHHHhHHHHHhcc
Q psy7331 1 MGAYLSQPITKKESTNHEGSNLTCGASSMQGWRIYQEDAHNVIIDFDENKSLFAVYDGHGGSEVAVYTSQHLPEFIKKTE 80 (139)
Q Consensus 1 m~~~l~~p~~~~~~~~~~~~~~~~g~~~~~G~R~~mED~~~v~~~~~~~~~~fgVfDGHgG~~~a~~~~~~l~~~l~~~~ 80 (139)
||.|||+|+|.|.++.+.++.+.||..+|||||..|||+|-++.+|+.++++|+|||||||..+|.||+..||.+|.+..
T Consensus 1 MGAYLs~P~t~K~s~dg~g~lL~yg~s~MQGWRvsqEDAHNci~~ld~~t~mF~VYDGHGG~EVa~yca~kLPdflK~~k 80 (542)
T KOG0699|consen 1 MGAYLSKPITEKESEDGSGNLLSYGCSTMQGWRVSQEDAHNCIVDLDTDTHMFGVYDGHGGTEVAKYCAAKLPDFLKERK 80 (542)
T ss_pred CcccccCCccccccccccCccchhchhhhhccccchhhhhcccccccCcceEEEEecCCCcHHHHHHHHHhhhHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCcccHHHHHHHHHHHHHHHhhhhhHhhhhccCCC
Q psy7331 81 QFKKGNYKQALIDAFMEFDESLIKDEVMAILKTLKK 116 (139)
Q Consensus 81 ~~~~~~~~~al~~af~~~d~~l~~~~~~~~~~~~~G 116 (139)
.+..+++..+|++||+.+|..|+....+..|....|
T Consensus 81 ~yk~g~~~~aL~~AFl~fD~~l~~ee~~keLk~iag 116 (542)
T KOG0699|consen 81 FYKAGDVAEALQKAFLDFDDFLRAEESMKELKDIAG 116 (542)
T ss_pred hhhcccHHHHHHHHHhchhhhhcCHHHHHHHHHHcC
Confidence 898899999999999999999998877666655444
No 3
>PTZ00224 protein phosphatase 2C; Provisional
Probab=99.94 E-value=3.2e-26 Score=179.66 Aligned_cols=126 Identities=21% Similarity=0.386 Sum_probs=107.4
Q ss_pred CCCCCCCCceeeeeeecCCCceEEEEEeccccCCCCcceEEeeeecCCCeeEEEEEeCCCchHHHHHHHHHhHHHHHhcc
Q psy7331 1 MGAYLSQPITKKESTNHEGSNLTCGASSMQGWRIYQEDAHNVIIDFDENKSLFAVYDGHGGSEVAVYTSQHLPEFIKKTE 80 (139)
Q Consensus 1 m~~~l~~p~~~~~~~~~~~~~~~~g~~~~~G~R~~mED~~~v~~~~~~~~~~fgVfDGHgG~~~a~~~~~~l~~~l~~~~ 80 (139)
||..|++|++.+.++...+..+.+|+.+++|+|++|||++++... ++..||||||||||..||+|++++|+..+.+..
T Consensus 1 mg~~l~~p~~~~~~~~~~~~~~~~g~~s~~G~R~~nED~~~v~~~--~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~ 78 (381)
T PTZ00224 1 MGIMLPKPVLSKLVDRAGNSIFRCASACVNGYRESMEDAHLLYLT--DDWGFFGVFDGHVNDECSQYLARAWPQALEKEP 78 (381)
T ss_pred CCccCCCCccccccccCCCccEEEEEEeCCCCCCCCCCeeEeccC--CCceEEEEEeCCCcHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999987542 455799999999999999999999998886543
Q ss_pred ccCcccHHHHHHHHHHHHHHHhhhhhHhhhhccCCCCeEEEEEEEcCCCeEEEEEeec
Q psy7331 81 QFKKGNYKQALIDAFMEFDESLIKDEVMAILKTLKKENEVMAILKTLKKEITVSYFTK 138 (139)
Q Consensus 81 ~~~~~~~~~al~~af~~~d~~l~~~~~~~~~~~~~GsTa~v~li~~~~~~l~VA~~~~ 138 (139)
.. ...+.|+++|..+|+.+.+.. ..+|||+++++|. .+.++||||+|+
T Consensus 79 ~~---~~~~~l~~a~~~~d~~i~~~~------~~~GsTatv~lI~-~~~~l~vaNVGD 126 (381)
T PTZ00224 79 EP---MTDERMEELCLEIDEEWMDSG------REGGSTGTFCVIM-KDVHLQVGNVGD 126 (381)
T ss_pred cc---ccHHHHHHHHHHHHHHHHhcc------cCCCCeEEEEEEE-ECCEEEEEEccc
Confidence 21 234569999999999998543 2369999999885 358999999985
No 4
>PLN03145 Protein phosphatase 2c; Provisional
Probab=99.92 E-value=1.2e-24 Score=170.02 Aligned_cols=116 Identities=22% Similarity=0.366 Sum_probs=96.2
Q ss_pred CCceEEEEEeccccCCCCcceEEeeeecC----------CCeeEEEEEeCCCchHHHHHHHHHhHHHHHhccccCcccHH
Q psy7331 19 GSNLTCGASSMQGWRIYQEDAHNVIIDFD----------ENKSLFAVYDGHGGSEVAVYTSQHLPEFIKKTEQFKKGNYK 88 (139)
Q Consensus 19 ~~~~~~g~~~~~G~R~~mED~~~v~~~~~----------~~~~~fgVfDGHgG~~~a~~~~~~l~~~l~~~~~~~~~~~~ 88 (139)
.+.+.+|.++.+|.|++|||+|++..++. .+..||||||||||+.+++|++++|++.+.+...+. .+++
T Consensus 62 ~~~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~-~~~~ 140 (365)
T PLN03145 62 IPVVRSGAWADIGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFP-REIE 140 (365)
T ss_pred cCceEEEEEccccCCCCCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccc-hhHH
Confidence 35578999999999999999998876541 235799999999999999999999999998765553 5788
Q ss_pred HHHHHHHHHHHHHhhhhhHhhhhccCCCCeEEEEEEEcCCCeEEEEEeec
Q psy7331 89 QALIDAFMEFDESLIKDEVMAILKTLKKENEVMAILKTLKKEITVSYFTK 138 (139)
Q Consensus 89 ~al~~af~~~d~~l~~~~~~~~~~~~~GsTa~v~li~~~~~~l~VA~~~~ 138 (139)
++|.++|.++|+.|.+...... ...+|||+++++|. +++|||||+|+
T Consensus 141 ~al~~af~~~d~~~~~~~~~~~-~~~~GTTavv~li~--~~~l~vaNvGD 187 (365)
T PLN03145 141 KVVSSAFLQTDTAFAEACSLDA-SLASGTTALAALVV--GRSLVVANAGD 187 (365)
T ss_pred HHHHHHHHHHhHHHHhhhcccc-CCCCcCcEEEEEEE--CCeEEEEecCC
Confidence 9999999999999976533221 22489999999996 89999999985
No 5
>KOG0698|consensus
Probab=99.91 E-value=2.1e-23 Score=161.47 Aligned_cols=112 Identities=28% Similarity=0.426 Sum_probs=93.9
Q ss_pred EEEEEeccccCCCCcceEEeeeecC------C-CeeEEEEEeCCCchHHHHHHHHHhHHHHHhccccCcc--cHHHHHHH
Q psy7331 23 TCGASSMQGWRIYQEDAHNVIIDFD------E-NKSLFAVYDGHGGSEVAVYTSQHLPEFIKKTEQFKKG--NYKQALID 93 (139)
Q Consensus 23 ~~g~~~~~G~R~~mED~~~v~~~~~------~-~~~~fgVfDGHgG~~~a~~~~~~l~~~l~~~~~~~~~--~~~~al~~ 93 (139)
..+.++.+|+|+.|||++....++. . ...||||||||||+.||+|++++|+..|.++..+... .+++++++
T Consensus 41 ~~~~~~~~~~r~~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~~ 120 (330)
T KOG0698|consen 41 LGSLLSIRGRRRKMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDALRR 120 (330)
T ss_pred ceEEEecCCCCCccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHH
Confidence 3555699999999999999987742 2 5789999999999999999999999999998777654 59999999
Q ss_pred HHH-HHHHHhhhhhHhhhhccCCCCeEEEEEEEcCCCeEEEEEeec
Q psy7331 94 AFM-EFDESLIKDEVMAILKTLKKENEVMAILKTLKKEITVSYFTK 138 (139)
Q Consensus 94 af~-~~d~~l~~~~~~~~~~~~~GsTa~v~li~~~~~~l~VA~~~~ 138 (139)
+|. .+|..+.+.. .-...+|+||+++++. .+++|||||+|.
T Consensus 121 ~F~~~~D~~~~~~~---~~~~~~gstav~~vi~-~~~~l~vaN~GD 162 (330)
T KOG0698|consen 121 AFLTKTDSEFLEKR---EDNRSGGSTAVVALIK-KGRKLYVANVGD 162 (330)
T ss_pred HHHHHHHHHHHhhc---cCCCCCcceeeeeeEe-cCCEEEEEEcCC
Confidence 999 6999999761 1124589999999996 244999999985
No 6
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=99.91 E-value=7e-24 Score=158.51 Aligned_cols=113 Identities=41% Similarity=0.629 Sum_probs=96.9
Q ss_pred EEEEEeccccCCCCcceEEeeeec-----CCCeeEEEEEeCCCchHHHHHHHHHhHHHHHhccccCcc-cHHHHHHHHHH
Q psy7331 23 TCGASSMQGWRIYQEDAHNVIIDF-----DENKSLFAVYDGHGGSEVAVYTSQHLPEFIKKTEQFKKG-NYKQALIDAFM 96 (139)
Q Consensus 23 ~~g~~~~~G~R~~mED~~~v~~~~-----~~~~~~fgVfDGHgG~~~a~~~~~~l~~~l~~~~~~~~~-~~~~al~~af~ 96 (139)
.+|..+++|+|++|||++++..++ ..+..+|||||||||..+|+|++++|+..+.+...+... ++.++|.++|.
T Consensus 1 ~~~~~~~~g~r~~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~~ 80 (254)
T PF00481_consen 1 DYGVSSMQGVRKEMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAFL 80 (254)
T ss_dssp EEEEEEEECTSSSHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CcCeecCCCCCCcccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhcccceee
Confidence 478999999999999999999866 257789999999999999999999999988876655434 79999999999
Q ss_pred H-HHHHhhhhhHhhhhccCCCCeEEEEEEEcCCCeEEEEEeec
Q psy7331 97 E-FDESLIKDEVMAILKTLKKENEVMAILKTLKKEITVSYFTK 138 (139)
Q Consensus 97 ~-~d~~l~~~~~~~~~~~~~GsTa~v~li~~~~~~l~VA~~~~ 138 (139)
+ +|..+.+..... ....+||||++++|. +++|||||+|.
T Consensus 81 ~~~~~~~~~~~~~~-~~~~~GsTa~v~li~--~~~l~vanvGD 120 (254)
T PF00481_consen 81 AFTDESLYSDSENN-ESSKSGSTATVALID--GNKLYVANVGD 120 (254)
T ss_dssp HHHHHHHHHHHHHH-THTTSEEEEEEEEEE--TTEEEEEEESS
T ss_pred eccccccccccccc-ccccccccccccccc--cceeEEEeeee
Confidence 9 999998743322 345699999999996 88999999985
No 7
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.76 E-value=1.1e-17 Score=125.93 Aligned_cols=116 Identities=22% Similarity=0.232 Sum_probs=90.1
Q ss_pred ceEEEEEeccc-cCCCCcceEEeeeecCCC-eeEEEEEeCCCchHHHHHHHHHhHHHHHhccc---cCccc--HHHHHHH
Q psy7331 21 NLTCGASSMQG-WRIYQEDAHNVIIDFDEN-KSLFAVYDGHGGSEVAVYTSQHLPEFIKKTEQ---FKKGN--YKQALID 93 (139)
Q Consensus 21 ~~~~g~~~~~G-~R~~mED~~~v~~~~~~~-~~~fgVfDGHgG~~~a~~~~~~l~~~l~~~~~---~~~~~--~~~al~~ 93 (139)
.+.++..+..| .|..|||++.+..+.... ..||+|||||||+.+++++++.+.+.|.+... +.... +++.|.+
T Consensus 7 ~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~l~~ 86 (262)
T COG0631 7 SLKVAGLSDVGTVRKHNEDAFLIKPNENGNLLLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEELLKE 86 (262)
T ss_pred eeeeeeeccCCCccCCCCcceeeccccCCcceeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHH
Confidence 34444555555 588999999988743211 57999999999999999999999999977531 11112 7899999
Q ss_pred HHHHHHHHhhhhhHhhhhccCCCCeEEEEEEEcCCCeEEEEEeec
Q psy7331 94 AFMEFDESLIKDEVMAILKTLKKENEVMAILKTLKKEITVSYFTK 138 (139)
Q Consensus 94 af~~~d~~l~~~~~~~~~~~~~GsTa~v~li~~~~~~l~VA~~~~ 138 (139)
++..+++.+............+|||.+++++. ++++||||+|+
T Consensus 87 ~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~--~~~l~~a~vGD 129 (262)
T COG0631 87 AILKANEAIAEEGQLNEDVRGMGTTLVLLLIR--GNKLYVANVGD 129 (262)
T ss_pred HHHHHHHHHHHhhhcccccCCCceeEEEEEEE--CCeEEEEEccC
Confidence 99999999998765444456789999999995 88999999986
No 8
>KOG0700|consensus
Probab=99.75 E-value=9.3e-18 Score=130.16 Aligned_cols=102 Identities=21% Similarity=0.360 Sum_probs=81.1
Q ss_pred CCcceEEeeeecCCCeeEEEEEeCCCchHHHHHHHHHhHHHHHhcc-------------cc-------------------
Q psy7331 35 YQEDAHNVIIDFDENKSLFAVYDGHGGSEVAVYTSQHLPEFIKKTE-------------QF------------------- 82 (139)
Q Consensus 35 ~mED~~~v~~~~~~~~~~fgVfDGHgG~~~a~~~~~~l~~~l~~~~-------------~~------------------- 82 (139)
.-||+..+.....+.+.|+||||||||++|++|++++|...+..+. ..
T Consensus 84 ~~edrv~~~~s~~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~ 163 (390)
T KOG0700|consen 84 AEEDRVSVAVSEENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSAD 163 (390)
T ss_pred cccCcceeeeeccCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccC
Confidence 4477777777767899999999999999999999999999887221 00
Q ss_pred C-cccHHHHHHHHHHHHHHHhhhhhH----hhhhccCCCCeEEEEEEEcCCCeEEEEEeec
Q psy7331 83 K-KGNYKQALIDAFMEFDESLIKDEV----MAILKTLKKENEVMAILKTLKKEITVSYFTK 138 (139)
Q Consensus 83 ~-~~~~~~al~~af~~~d~~l~~~~~----~~~~~~~~GsTa~v~li~~~~~~l~VA~~~~ 138 (139)
. ...+.++|.+||.++|+.|.+... ....-..+||||+|++|+ +..||||.+|+
T Consensus 164 ~~~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~--~~~LyVaN~GD 222 (390)
T KOG0700|consen 164 QRHGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIK--GGDLYVANVGD 222 (390)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEe--CCeEEEEecCc
Confidence 1 356899999999999999986421 111224799999999996 99999999885
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.75 E-value=6.8e-17 Score=119.71 Aligned_cols=117 Identities=32% Similarity=0.467 Sum_probs=95.8
Q ss_pred CceEEEEEeccccCCCCcceEEeeeecCCCeeEEEEEeCCCchHHHHHHHHHhHHHHHhccccCc---ccHHHHHHHHHH
Q psy7331 20 SNLTCGASSMQGWRIYQEDAHNVIIDFDENKSLFAVYDGHGGSEVAVYTSQHLPEFIKKTEQFKK---GNYKQALIDAFM 96 (139)
Q Consensus 20 ~~~~~g~~~~~G~R~~mED~~~v~~~~~~~~~~fgVfDGHgG~~~a~~~~~~l~~~l~~~~~~~~---~~~~~al~~af~ 96 (139)
..+.++..+.+|.|..|||++.+..++..+..+|+|+|||||..+|+++++.+...+.+...... ..+.+.|.++|.
T Consensus 4 ~~~~~~~~~~~~~r~~neD~~~~~~~~~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (255)
T smart00332 4 LGLRYGLSSMQGVRKPMEDAHVITPDLSDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRKAFL 83 (255)
T ss_pred CceeEEEecCCCCCCCCcceEEEeccCCCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHH
Confidence 34667788899999999999988765446788999999999999999999999998876543322 358899999999
Q ss_pred HHHHHhhhhhHhhhhccCCCCeEEEEEEEcCCCeEEEEEeec
Q psy7331 97 EFDESLIKDEVMAILKTLKKENEVMAILKTLKKEITVSYFTK 138 (139)
Q Consensus 97 ~~d~~l~~~~~~~~~~~~~GsTa~v~li~~~~~~l~VA~~~~ 138 (139)
++++.+.+..........+|||++++++. .+++|++|+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~~l~~~~vGD 123 (255)
T smart00332 84 KTDEEILEELESLEEDAGSGSTAVVALIS--GNKLYVANVGD 123 (255)
T ss_pred HHHHHHHHhhhhccCCCCCCccEEEEEEE--CCEEEEEeccC
Confidence 99999987654332234589999999996 78999999985
No 10
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.74 E-value=5.2e-17 Score=119.92 Aligned_cols=114 Identities=25% Similarity=0.377 Sum_probs=93.1
Q ss_pred EEEEEeccccCCCCcceEEeeeecC-CCeeEEEEEeCCCchHHHHHHHHHhHHHHHhccccC----cccHHHHHHHHHHH
Q psy7331 23 TCGASSMQGWRIYQEDAHNVIIDFD-ENKSLFAVYDGHGGSEVAVYTSQHLPEFIKKTEQFK----KGNYKQALIDAFME 97 (139)
Q Consensus 23 ~~g~~~~~G~R~~mED~~~v~~~~~-~~~~~fgVfDGHgG~~~a~~~~~~l~~~l~~~~~~~----~~~~~~al~~af~~ 97 (139)
.++..+..|.|+.|||++.+..... .+..+|+|+|||||...++++++.+...+.+..... ...+...|+++|..
T Consensus 2 ~~~~~~~~g~r~~neD~~~~~~~~~~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (254)
T cd00143 2 SAGVSDKGGDRKTNEDAVVIKPNLNNEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAFLR 81 (254)
T ss_pred ceeeecCCCCCCCCcceEEEeccCCCCCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 5778889999999999999866422 266899999999999999999999998887654322 35788999999999
Q ss_pred HHHHhhhhhHhhhhccCCCCeEEEEEEEcCCCeEEEEEeec
Q psy7331 98 FDESLIKDEVMAILKTLKKENEVMAILKTLKKEITVSYFTK 138 (139)
Q Consensus 98 ~d~~l~~~~~~~~~~~~~GsTa~v~li~~~~~~l~VA~~~~ 138 (139)
+++.+............+|||++++++. +++++++|+|.
T Consensus 82 ~~~~l~~~~~~~~~~~~~gtT~~~~~~~--~~~l~~~~vGD 120 (254)
T cd00143 82 ADEEILEEAQDEPDDARSGTTAVVALIR--GNKLYVANVGD 120 (254)
T ss_pred HHHHHHHhhhhccCCCCCCCcEEEEEEE--CCEEEEEEecC
Confidence 9999987654322345689999999996 79999999985
No 11
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.71 E-value=1.4e-16 Score=131.90 Aligned_cols=115 Identities=16% Similarity=0.208 Sum_probs=84.2
Q ss_pred ceEEEEEecccc-CCCCcceEEeeeec-----C-----CCeeEEEEEeCCCchH----HHHHHHHHhHHHHHhccccCcc
Q psy7331 21 NLTCGASSMQGW-RIYQEDAHNVIIDF-----D-----ENKSLFAVYDGHGGSE----VAVYTSQHLPEFIKKTEQFKKG 85 (139)
Q Consensus 21 ~~~~g~~~~~G~-R~~mED~~~v~~~~-----~-----~~~~~fgVfDGHgG~~----~a~~~~~~l~~~l~~~~~~~~~ 85 (139)
.+.++..+.+|. |+.|||++.+..++ + ....+|+|||||||+. ||+++.+.|...+.+..... .
T Consensus 374 ~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~-~ 452 (645)
T PRK14559 374 SLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDE-L 452 (645)
T ss_pred eEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhccc-c
Confidence 477899999996 99999998775432 1 1356999999999887 45566666666665432111 2
Q ss_pred cHHHHHHHHHHHHHHHhhhhhHhhh--hccCCCCeEEEEEEEcCCCeEEEEEeec
Q psy7331 86 NYKQALIDAFMEFDESLIKDEVMAI--LKTLKKENEVMAILKTLKKEITVSYFTK 138 (139)
Q Consensus 86 ~~~~al~~af~~~d~~l~~~~~~~~--~~~~~GsTa~v~li~~~~~~l~VA~~~~ 138 (139)
..++.|+++|..+++.|.+...... -...+|||+++++|. ++++||||+|+
T Consensus 453 ~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~--~~~l~ianVGD 505 (645)
T PRK14559 453 PDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQ--DTQVAVAHVGD 505 (645)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEE--CCEEEEEEecC
Confidence 3467899999999999986532221 123589999999996 89999999986
No 12
>KOG1323|consensus
Probab=99.26 E-value=3.6e-11 Score=92.19 Aligned_cols=86 Identities=30% Similarity=0.392 Sum_probs=67.5
Q ss_pred CeeEEEEEeCCCchHHHHHHHHHhHHHHHhccc----------------cC-----------------------cccHHH
Q psy7331 49 NKSLFAVYDGHGGSEVAVYTSQHLPEFIKKTEQ----------------FK-----------------------KGNYKQ 89 (139)
Q Consensus 49 ~~~~fgVfDGHgG~~~a~~~~~~l~~~l~~~~~----------------~~-----------------------~~~~~~ 89 (139)
+.++|..||||.|+.+|-.+++.|+..+.++.. +. +.-+..
T Consensus 143 ~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LViG 222 (493)
T KOG1323|consen 143 DGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLVIG 222 (493)
T ss_pred cceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhhHH
Confidence 567999999999999999988888877755310 00 012678
Q ss_pred HHHHHHHHHHHHhhhhhHhhhhccCCCCeEEEEEEEcCCCeEEEEEeec
Q psy7331 90 ALIDAFMEFDESLIKDEVMAILKTLKKENEVMAILKTLKKEITVSYFTK 138 (139)
Q Consensus 90 al~~af~~~d~~l~~~~~~~~~~~~~GsTa~v~li~~~~~~l~VA~~~~ 138 (139)
||..||++||+.|.++.....+ ..||||+++++ +-++||||.-|+
T Consensus 223 AlEsAFqemDeqiarer~~~~~--~GGCtalvvi~--llGKlYvaNAGD 267 (493)
T KOG1323|consen 223 ALESAFQEMDEQIARERQVWRL--PGGCTALVVIV--LLGKLYVANAGD 267 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC--CCCceEEEeee--eccceEEccCCC
Confidence 9999999999999887655543 48999999999 689999997654
No 13
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=98.94 E-value=1.4e-08 Score=73.58 Aligned_cols=108 Identities=15% Similarity=0.143 Sum_probs=57.8
Q ss_pred EeccccCCCCcceEEeeeecCCCeeEEEEEeCCCchHHHHH----HHHHhHHHHHhccccCccc-HHHHHHHHHHHHHHH
Q psy7331 27 SSMQGWRIYQEDAHNVIIDFDENKSLFAVYDGHGGSEVAVY----TSQHLPEFIKKTEQFKKGN-YKQALIDAFMEFDES 101 (139)
Q Consensus 27 ~~~~G~R~~mED~~~v~~~~~~~~~~fgVfDGHgG~~~a~~----~~~~l~~~l~~~~~~~~~~-~~~al~~af~~~d~~ 101 (139)
.+.+|.|..|||++.+... .+..+++|.||+||...++. +.+.+...+.+........ .++.++....++...
T Consensus 3 ~sh~~~~~~nqD~~~~~~~--~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (212)
T PF13672_consen 3 RSHRGRGAPNQDAFGIRTD--DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEILSI 80 (212)
T ss_dssp ----TTSSS--EEEEEE-T--CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCCEEeeeC--CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 4677889999999985443 45567799999997655444 4455555554443222112 233334443344332
Q ss_pred h--h-hhhHhhhhccCCCCeEEEEEEEcCCCeEEEEEeec
Q psy7331 102 L--I-KDEVMAILKTLKKENEVMAILKTLKKEITVSYFTK 138 (139)
Q Consensus 102 l--~-~~~~~~~~~~~~GsTa~v~li~~~~~~l~VA~~~~ 138 (139)
+ . +...........+||.+++++. +++++++|+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~tTl~~~v~~--~~~~~~~~iGD 118 (212)
T PF13672_consen 81 VRAFQSAKQADLELRDYGTTLLALVID--PDKVYIFNIGD 118 (212)
T ss_dssp H----HHHHHSGGGTT-EE-EEEEEEE--TTEEEEEEESS
T ss_pred hhhhhhhhhccccccccCceEEEEEEE--CCEEEEEEECC
Confidence 2 0 0000112233468999999986 78899999985
No 14
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=98.71 E-value=2.3e-07 Score=66.28 Aligned_cols=94 Identities=11% Similarity=0.044 Sum_probs=68.3
Q ss_pred CCCcceEEeeeecCCCeeEEEEEeCCCchHHHHHHHHHhHHHHHhccccCcccHHHHHHHHHHHHHHHhhhhhHhhhhcc
Q psy7331 34 IYQEDAHNVIIDFDENKSLFAVYDGHGGSEVAVYTSQHLPEFIKKTEQFKKGNYKQALIDAFMEFDESLIKDEVMAILKT 113 (139)
Q Consensus 34 ~~mED~~~v~~~~~~~~~~fgVfDGHgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~al~~af~~~d~~l~~~~~~~~~~~ 113 (139)
.---|.|-+... +++..+|+|+||||+...|.+++..+...+.+..... ..+.+.+.++|+.+.... ..
T Consensus 15 ~~~GD~~~~~~~-~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~-----~~~~~~l~~~n~~l~~~~-----~~ 83 (193)
T smart00331 15 QVGGDFYDVVKL-PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEG-----ISLSQILERLNRAIYENG-----ED 83 (193)
T ss_pred hcCccEEEEEEe-CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcC-----CCHHHHHHHHHHHHHhcC-----CC
Confidence 345677766543 4457799999999988888888888888776643221 135566677787776541 23
Q ss_pred CCCCeEEEEEEEcCCCeEEEEEeec
Q psy7331 114 LKKENEVMAILKTLKKEITVSYFTK 138 (139)
Q Consensus 114 ~~GsTa~v~li~~~~~~l~VA~~~~ 138 (139)
.+|+|+++++++...+++++++.|.
T Consensus 84 ~~~~T~~~~~id~~~~~l~~~~~Gd 108 (193)
T smart00331 84 GMFATLFLALYDFAGGTLSYANAGH 108 (193)
T ss_pred CcEEEEEEEEEECCCCEEEEEeCCC
Confidence 4799999999987899999999875
No 15
>KOG1379|consensus
Probab=98.43 E-value=2.5e-06 Score=65.24 Aligned_cols=94 Identities=15% Similarity=0.233 Sum_probs=65.6
Q ss_pred CCcceEEeeeecCCCeeEEEEEeCCCchH-----HHHHHHHHhHHH--HHhccccCcccHHHHHHHHHHHHHHHhhhhhH
Q psy7331 35 YQEDAHNVIIDFDENKSLFAVYDGHGGSE-----VAVYTSQHLPEF--IKKTEQFKKGNYKQALIDAFMEFDESLIKDEV 107 (139)
Q Consensus 35 ~mED~~~v~~~~~~~~~~fgVfDGHgG~~-----~a~~~~~~l~~~--l~~~~~~~~~~~~~al~~af~~~d~~l~~~~~ 107 (139)
.=||++.+..+ ....+.||+||-||+. .+.|.++.+... +.+...+...++...|.+||.++-..
T Consensus 90 ~GEDa~Fvss~--~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~~~------ 161 (330)
T KOG1379|consen 90 GGEDAWFVSSN--PHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAELKSQ------ 161 (330)
T ss_pred CCCcceeeccC--cccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHhhc------
Confidence 35899988664 5677999999999875 566655443322 12233444468899999998765332
Q ss_pred hhhhccCCCCeEEEEEEEcCCCeEEEEEeec
Q psy7331 108 MAILKTLKKENEVMAILKTLKKEITVSYFTK 138 (139)
Q Consensus 108 ~~~~~~~~GsTa~v~li~~~~~~l~VA~~~~ 138 (139)
+.+.-.+|||+++++...+++|++|.||+
T Consensus 162 --~~~~vGSSTAcI~~l~~~~~~Lh~aNLGD 190 (330)
T KOG1379|consen 162 --KVPIVGSSTACILALDRENGKLHTANLGD 190 (330)
T ss_pred --CCCCCCcceeeeeeeecCCCeEEEeeccC
Confidence 11234689999999986699999999985
No 16
>KOG0618|consensus
Probab=96.73 E-value=0.0022 Score=55.70 Aligned_cols=98 Identities=16% Similarity=0.274 Sum_probs=70.6
Q ss_pred ceEEEEEeccccCCCCcceEEeeeec-CCCeeEEEEEeCCCchHHHHHHHHHhHHHHHhccccCcccHHHHHHHHHHHHH
Q psy7331 21 NLTCGASSMQGWRIYQEDAHNVIIDF-DENKSLFAVYDGHGGSEVAVYTSQHLPEFIKKTEQFKKGNYKQALIDAFMEFD 99 (139)
Q Consensus 21 ~~~~g~~~~~G~R~~mED~~~v~~~~-~~~~~~fgVfDGHgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~al~~af~~~d 99 (139)
.+.||++.+.|.|...==+-....++ ......||+|||-+-..+..+++..+...+.++.... ++-.+-++.+|+.++
T Consensus 521 ~~t~Gv~~~~gqrnk~c~~~~~v~nf~~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~-~~et~~mr~~fl~~~ 599 (1081)
T KOG0618|consen 521 LWTYGVAGVSGQRNKVCSRAVWVENFFLNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLY-GNETEQMRNTFLRLN 599 (1081)
T ss_pred heeeccchhcccccchhhhhhhhhhcccCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHh
Confidence 36699999999997754443333332 4667899999999999999999999999998765443 233444999999999
Q ss_pred HHhhhhhHhhhhccCCCCeEEEEEEE
Q psy7331 100 ESLIKDEVMAILKTLKKENEVMAILK 125 (139)
Q Consensus 100 ~~l~~~~~~~~~~~~~GsTa~v~li~ 125 (139)
+++-+.... -|..++.+.|.
T Consensus 600 rklg~~g~~------lg~~~~~~~i~ 619 (1081)
T KOG0618|consen 600 RKLGEEGQV------LGGSVVLCQIV 619 (1081)
T ss_pred hhhhhhhcc------ccchhhheeec
Confidence 999654422 35555555554
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=94.98 E-value=0.39 Score=41.73 Aligned_cols=96 Identities=13% Similarity=0.008 Sum_probs=61.0
Q ss_pred ccCCCCcceEEeeeecCCCeeEEEEEeCCCchHHHHHHHHHhHHHHHhccccCcccHHHHHHHHHHHHHHHhhhhhHhhh
Q psy7331 31 GWRIYQEDAHNVIIDFDENKSLFAVYDGHGGSEVAVYTSQHLPEFIKKTEQFKKGNYKQALIDAFMEFDESLIKDEVMAI 110 (139)
Q Consensus 31 G~R~~mED~~~v~~~~~~~~~~fgVfDGHgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~al~~af~~~d~~l~~~~~~~~ 110 (139)
+.+....|.|.+... ++...++.|.||-|.-..|...+......+.+..... -+ ...+...+|..+....
T Consensus 562 ~g~~vsGD~y~~~~l-~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g-~~----~~~ai~~lN~~L~~~~---- 631 (764)
T TIGR02865 562 DGELVSGDSYSFGKL-SAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESG-FD----REVAIKTVNSILSLRS---- 631 (764)
T ss_pred CCCcccCceEEEEEE-CCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcC-CC----HHHHHHHHHHHHHhCC----
Confidence 346678999876543 4455689999999944434344444444443321111 12 2556677777765331
Q ss_pred hccCCCCeEEEEEEEcCCCeEEEEEee
Q psy7331 111 LKTLKKENEVMAILKTLKKEITVSYFT 137 (139)
Q Consensus 111 ~~~~~GsTa~v~li~~~~~~l~VA~~~ 137 (139)
...+.+|+.+++++..++++.+++.|
T Consensus 632 -~~~~faTl~l~~IDl~~g~~~~~~aG 657 (764)
T TIGR02865 632 -TDEKFSTLDLSVIDLYTGQAEFVKVG 657 (764)
T ss_pred -CCCeEEEEEEEEEECCCCeEEEEecC
Confidence 22368999999999888999988876
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=94.93 E-value=0.66 Score=32.56 Aligned_cols=81 Identities=16% Similarity=0.123 Sum_probs=48.3
Q ss_pred CCeeEEEEEeCCC-chHHHHHHHHHhHHHHHhccccCcccHHHHHHHHHHHHHHHhhhhhHhhhhccCCCCeEEEEEEEc
Q psy7331 48 ENKSLFAVYDGHG-GSEVAVYTSQHLPEFIKKTEQFKKGNYKQALIDAFMEFDESLIKDEVMAILKTLKKENEVMAILKT 126 (139)
Q Consensus 48 ~~~~~fgVfDGHg-G~~~a~~~~~~l~~~l~~~~~~~~~~~~~al~~af~~~d~~l~~~~~~~~~~~~~GsTa~v~li~~ 126 (139)
++..++.|.|+-| |-.+| +.+-.+...+....... .+ ..+....+++.+....... ....|++++.++.
T Consensus 2 ~~~~~~~v~D~~GhG~~aa-~~~~~~~~~~~~~~~~~-~~----p~~~l~~ln~~l~~~~~~~----~~~~t~~~~~~d~ 71 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAA-LLSAALASAIRELLDEG-LD----PEELLEALNRRLYRDLKGD----NRYATACYAIIDP 71 (193)
T ss_dssp TTEEEEEEEEESSSSHHHH-HHHHHHHHHHHHHHHTT-TS----HHHHHHHHHHHHHHHTTTT----STTEEEEEEEEET
T ss_pred CCEEEEEEEEecCCCHHHH-HHHHHHHHHHHHHHHcC-CC----HHHHHHHHHHHHHHHhhhc----cccceEEEEEecc
Confidence 3456889999877 43333 33444444443322111 22 4555556666664322111 2688999999999
Q ss_pred CCCeEEEEEeec
Q psy7331 127 LKKEITVSYFTK 138 (139)
Q Consensus 127 ~~~~l~VA~~~~ 138 (139)
.+++|+++..|.
T Consensus 72 ~~~~l~~~~aG~ 83 (193)
T PF07228_consen 72 ETGTLTYANAGH 83 (193)
T ss_dssp TTTEEEEEEESS
T ss_pred cceEEEEeCCCC
Confidence 999999998763
No 19
>KOG0699|consensus
Probab=93.86 E-value=0.063 Score=42.57 Aligned_cols=24 Identities=8% Similarity=0.104 Sum_probs=20.7
Q ss_pred cCCCCeEEEEEEEcCCCeEEEEEeec
Q psy7331 113 TLKKENEVMAILKTLKKEITVSYFTK 138 (139)
Q Consensus 113 ~~~GsTa~v~li~~~~~~l~VA~~~~ 138 (139)
..|||||+||||. +++||||.-|.
T Consensus 328 ~DSGtTAvVcLv~--g~~liVANAGD 351 (542)
T KOG0699|consen 328 EDSGTTAVVCLVG--GDKLIVANAGD 351 (542)
T ss_pred CCCCceEEEEEec--CceEEEecCCC
Confidence 3589999999995 99999997654
No 20
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=75.00 E-value=4.7 Score=30.91 Aligned_cols=23 Identities=13% Similarity=-0.099 Sum_probs=19.8
Q ss_pred CCCCeEEEEEEEcCCCeEEEEEeecC
Q psy7331 114 LKKENEVMAILKTLKKEITVSYFTKK 139 (139)
Q Consensus 114 ~~GsTa~v~li~~~~~~l~VA~~~~~ 139 (139)
.||||.++|+= ++.+|.-|.||+
T Consensus 131 LSGCT~i~A~K---~~~~y~~HtGk~ 153 (281)
T PF05785_consen 131 LSGCTMIYARK---DNYFYAYHTGKS 153 (281)
T ss_dssp BSS-EEEEEEE---TTEEEEEEEEES
T ss_pred cCCCEEEEEEc---CCeEEEEEcCCC
Confidence 68999999987 899999999985
No 21
>PLN02388 phosphopantetheine adenylyltransferase
Probab=65.58 E-value=3.7 Score=29.39 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=13.8
Q ss_pred CCeeEEEEEeC-CCchHH
Q psy7331 48 ENKSLFAVYDG-HGGSEV 64 (139)
Q Consensus 48 ~~~~~fgVfDG-HgG~~~ 64 (139)
+.....|.||| |-||..
T Consensus 20 ~~Vv~gGtFDgLH~GHq~ 37 (177)
T PLN02388 20 GAVVLGGTFDRLHDGHRL 37 (177)
T ss_pred CeEEEEecCCccCHHHHH
Confidence 45678999999 999863
No 22
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=51.18 E-value=4.3 Score=28.26 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=9.0
Q ss_pred CeeEEEEEeC-CCchH
Q psy7331 49 NKSLFAVYDG-HGGSE 63 (139)
Q Consensus 49 ~~~~fgVfDG-HgG~~ 63 (139)
....+|.||| |-||.
T Consensus 7 ~~v~iG~FDGvH~GHq 22 (157)
T PF06574_consen 7 SVVAIGNFDGVHLGHQ 22 (157)
T ss_dssp EEEEES--TT--HHHH
T ss_pred cEEEEeCCCCccHHHH
Confidence 3456899999 88985
No 23
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=49.63 E-value=8.2 Score=25.49 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=10.7
Q ss_pred EEEEEeC-CCchHH
Q psy7331 52 LFAVYDG-HGGSEV 64 (139)
Q Consensus 52 ~fgVfDG-HgG~~~ 64 (139)
.+|.||| |-||..
T Consensus 3 ~~G~FDg~H~GH~~ 16 (125)
T TIGR01518 3 TYGTFDLLHWGHIN 16 (125)
T ss_pred EcceeCCCCHHHHH
Confidence 5799999 889864
No 24
>PRK10693 response regulator of RpoS; Provisional
Probab=48.19 E-value=1.2e+02 Score=23.08 Aligned_cols=37 Identities=5% Similarity=0.006 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhhhHhhhhccCCCCeEEEEEEEcCCCeEEEE
Q psy7331 92 IDAFMEFDESLIKDEVMAILKTLKKENEVMAILKTLKKEITVS 134 (139)
Q Consensus 92 ~~af~~~d~~l~~~~~~~~~~~~~GsTa~v~li~~~~~~l~VA 134 (139)
......+|+.+.+... . .--|++.++++...++|..+
T Consensus 208 ~~~l~~lN~~l~~~~~----~--~~~t~~~~~~d~~~~~l~~~ 244 (303)
T PRK10693 208 GALLKQVNHLLRQANL----P--GQFPLLVGYYHRELKNLILV 244 (303)
T ss_pred HHHHHHHHHHHHhcCC----C--ceeeEEEEEEEcCCCeEEEE
Confidence 4444567777665421 1 12689999998777777664
No 25
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=47.91 E-value=12 Score=24.67 Aligned_cols=13 Identities=23% Similarity=0.335 Sum_probs=10.8
Q ss_pred eEEEEEeC-CCchH
Q psy7331 51 SLFAVYDG-HGGSE 63 (139)
Q Consensus 51 ~~fgVfDG-HgG~~ 63 (139)
...|.||| |-||.
T Consensus 5 ~~~G~FDgvH~GH~ 18 (129)
T cd02171 5 ITYGTFDLLHIGHL 18 (129)
T ss_pred EEeeeeccCCHHHH
Confidence 46899999 88985
No 26
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=46.22 E-value=11 Score=29.28 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=13.0
Q ss_pred CCeeEEEEEeC-CCchH
Q psy7331 48 ENKSLFAVYDG-HGGSE 63 (139)
Q Consensus 48 ~~~~~fgVfDG-HgG~~ 63 (139)
...-.+|.||| |-||.
T Consensus 16 ~~~l~IG~FDGvHlGHq 32 (304)
T COG0196 16 GCVLTIGNFDGVHLGHQ 32 (304)
T ss_pred CcEEEEEcCCccchhHH
Confidence 44557899999 88997
No 27
>PRK07143 hypothetical protein; Provisional
Probab=43.76 E-value=8.9 Score=29.40 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=12.0
Q ss_pred eeEEEEEeC-CCchHH
Q psy7331 50 KSLFAVYDG-HGGSEV 64 (139)
Q Consensus 50 ~~~fgVfDG-HgG~~~ 64 (139)
..-+|.||| |-||..
T Consensus 18 vvaiG~FDGvH~GHq~ 33 (279)
T PRK07143 18 TFVLGGFESFHLGHLE 33 (279)
T ss_pred EEEEccCCcCCHHHHH
Confidence 446899999 889864
No 28
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=41.02 E-value=19 Score=26.99 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=19.5
Q ss_pred EEEEe-CCCchHHHHHHHHHhHHH
Q psy7331 53 FAVYD-GHGGSEVAVYTSQHLPEF 75 (139)
Q Consensus 53 fgVfD-GHgG~~~a~~~~~~l~~~ 75 (139)
.|||| |-||-.+.+.+++.+|..
T Consensus 1 IgvfDSGiGGltv~~~l~~~~p~~ 24 (251)
T TIGR00067 1 IGVFDSGVGGLSVLKEIRKQLPKE 24 (251)
T ss_pred CEEEeCCccHHHHHHHHHHHCCCC
Confidence 48999 788999999999988744
No 29
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=38.56 E-value=28 Score=22.72 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=14.9
Q ss_pred eEEEEEeC-CCchH-HHHHHHHHh
Q psy7331 51 SLFAVYDG-HGGSE-VAVYTSQHL 72 (139)
Q Consensus 51 ~~fgVfDG-HgG~~-~a~~~~~~l 72 (139)
.+.|-||+ |-||. ..+.+.+..
T Consensus 3 ~~~G~Fdp~H~GH~~ll~~a~~~~ 26 (143)
T cd02039 3 IIIGRFEPFHLGHLKLIKEALEEA 26 (143)
T ss_pred EEeeccCCcCHHHHHHHHHHHHHc
Confidence 46899999 99995 334444443
No 30
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=37.45 E-value=15 Score=25.06 Aligned_cols=15 Identities=20% Similarity=0.155 Sum_probs=11.8
Q ss_pred eeEEEEEeC-CCchHH
Q psy7331 50 KSLFAVYDG-HGGSEV 64 (139)
Q Consensus 50 ~~~fgVfDG-HgG~~~ 64 (139)
....|.||| |-||..
T Consensus 14 v~~~G~FDgvH~GH~~ 29 (144)
T TIGR02199 14 VFTNGCFDILHAGHVS 29 (144)
T ss_pred EEEeCcccccCHHHHH
Confidence 346799999 889864
No 31
>COG3092 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.36 E-value=27 Score=23.71 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=17.9
Q ss_pred ccHHHHHHHHHHHHHHHhhhh
Q psy7331 85 GNYKQALIDAFMEFDESLIKD 105 (139)
Q Consensus 85 ~~~~~al~~af~~~d~~l~~~ 105 (139)
.++.+.|++||..+|+.+.++
T Consensus 128 q~LAdvLkrAf~qLdktfl~~ 148 (149)
T COG3092 128 QALADVLKRAFKQLDKTFLDD 148 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 367899999999999998753
No 32
>PRK00865 glutamate racemase; Provisional
Probab=35.76 E-value=30 Score=25.94 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.3
Q ss_pred EEEEEe-CCCchHHHHHHHHHhHHH
Q psy7331 52 LFAVYD-GHGGSEVAVYTSQHLPEF 75 (139)
Q Consensus 52 ~fgVfD-GHgG~~~a~~~~~~l~~~ 75 (139)
-.|||| |-||-.+.+.+++.||..
T Consensus 7 ~IgvfDSGiGGLtvl~~i~~~lp~~ 31 (261)
T PRK00865 7 PIGVFDSGVGGLTVLREIRRLLPDE 31 (261)
T ss_pred eEEEEECCccHHHHHHHHHHHCCCC
Confidence 489999 788999999999888754
No 33
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=35.05 E-value=16 Score=28.05 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=10.1
Q ss_pred EEEEEeC-CCchH
Q psy7331 52 LFAVYDG-HGGSE 63 (139)
Q Consensus 52 ~fgVfDG-HgG~~ 63 (139)
-+|.||| |-||.
T Consensus 3 aiG~FDGvH~GHq 15 (288)
T TIGR00083 3 AIGYFDGLHLGHQ 15 (288)
T ss_pred EEEeCCccCHHHH
Confidence 5799999 88985
No 34
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=34.94 E-value=37 Score=25.99 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=20.2
Q ss_pred EEEEEe-CCCchHHHHHHHHHhHHH
Q psy7331 52 LFAVYD-GHGGSEVAVYTSQHLPEF 75 (139)
Q Consensus 52 ~fgVfD-GHgG~~~a~~~~~~l~~~ 75 (139)
-.|||| |-||-.+.+.+.+.||..
T Consensus 7 ~IgvFDSGVGGLsVlrei~~~LP~e 31 (269)
T COG0796 7 PIGVFDSGVGGLSVLREIRRQLPDE 31 (269)
T ss_pred eEEEEECCCCcHHHHHHHHHHCCCC
Confidence 579999 788999999888888754
No 35
>PF04217 DUF412: Protein of unknown function, DUF412; InterPro: IPR007334 This family consists of bacterial uncharacterised proteins.
Probab=34.75 E-value=38 Score=23.42 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=17.0
Q ss_pred cHHHHHHHHHHHHHHHhhh
Q psy7331 86 NYKQALIDAFMEFDESLIK 104 (139)
Q Consensus 86 ~~~~al~~af~~~d~~l~~ 104 (139)
++.+.|++||+.+|+.+.+
T Consensus 124 dLA~lL~~Af~~LDk~f~~ 142 (143)
T PF04217_consen 124 DLAELLKRAFKQLDKSFWE 142 (143)
T ss_pred HHHHHHHHHHHHhHHHHhc
Confidence 5789999999999999875
No 36
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=34.38 E-value=19 Score=24.49 Aligned_cols=15 Identities=27% Similarity=0.242 Sum_probs=11.7
Q ss_pred eeEEEEEeC-CCchHH
Q psy7331 50 KSLFAVYDG-HGGSEV 64 (139)
Q Consensus 50 ~~~fgVfDG-HgG~~~ 64 (139)
....|.||| |-||..
T Consensus 7 vv~~G~FDgvH~GH~~ 22 (144)
T cd02172 7 VLCHGVFDLLHPGHVR 22 (144)
T ss_pred EEEecccCCCCHHHHH
Confidence 346799999 889854
No 37
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=33.61 E-value=20 Score=23.84 Aligned_cols=13 Identities=23% Similarity=0.220 Sum_probs=10.8
Q ss_pred eEEEEEeC-CCchH
Q psy7331 51 SLFAVYDG-HGGSE 63 (139)
Q Consensus 51 ~~fgVfDG-HgG~~ 63 (139)
.+.|.||| |-||.
T Consensus 5 ~~~G~FD~~H~GH~ 18 (136)
T cd02170 5 YAAGTFDIIHPGHI 18 (136)
T ss_pred EEcCccCCCCHHHH
Confidence 46899999 88985
No 38
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=30.39 E-value=26 Score=27.16 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=12.5
Q ss_pred CeeEEEEEeC-CCchHH
Q psy7331 49 NKSLFAVYDG-HGGSEV 64 (139)
Q Consensus 49 ~~~~fgVfDG-HgG~~~ 64 (139)
....+|.||| |-||..
T Consensus 15 ~vv~iG~FDGvH~GHq~ 31 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQA 31 (305)
T ss_pred EEEEEeeCCcCCHHHHH
Confidence 3457999999 889863
No 39
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=29.20 E-value=41 Score=18.99 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=13.6
Q ss_pred eEEEEEeC-CCchH-HHHHHHHH
Q psy7331 51 SLFAVYDG-HGGSE-VAVYTSQH 71 (139)
Q Consensus 51 ~~fgVfDG-HgG~~-~a~~~~~~ 71 (139)
.++|-||+ |-|+. ..+.+++.
T Consensus 3 ~~~G~Fdp~H~GH~~~l~~a~~~ 25 (66)
T TIGR00125 3 IFVGTFDPFHLGHLDLLERAKEL 25 (66)
T ss_pred EEcCccCCCCHHHHHHHHHHHHh
Confidence 46788888 88884 44555544
No 40
>KOG4530|consensus
Probab=29.06 E-value=75 Score=22.63 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=19.2
Q ss_pred CeeEEEEEeCCCchHHHHHHHHHh
Q psy7331 49 NKSLFAVYDGHGGSEVAVYTSQHL 72 (139)
Q Consensus 49 ~~~~fgVfDGHgG~~~a~~~~~~l 72 (139)
.-.+.--|-||||..|+..+++-.
T Consensus 119 KPalivSyGGhGGg~c~~qL~~v~ 142 (199)
T KOG4530|consen 119 KPALIVSYGGHGGGRCQYQLRQVG 142 (199)
T ss_pred CceEEEEecCCCCchHHHHHHHHH
Confidence 445788899999999998877653
No 41
>PF14808 TMEM164: TMEM164 family
Probab=28.43 E-value=26 Score=26.57 Aligned_cols=16 Identities=38% Similarity=0.630 Sum_probs=13.8
Q ss_pred EeCCCchHHHHHHHHH
Q psy7331 56 YDGHGGSEVAVYTSQH 71 (139)
Q Consensus 56 fDGHgG~~~a~~~~~~ 71 (139)
+.|.||.+|++|++.+
T Consensus 13 ~~gngGpeC~~fLs~~ 28 (252)
T PF14808_consen 13 IPGNGGPECANFLSPR 28 (252)
T ss_pred CCCCCChhhhHhCCHH
Confidence 5799999999998754
No 42
>COG5003 Mu-like prophage protein gp37 [General function prediction only]
Probab=28.00 E-value=23 Score=24.37 Aligned_cols=12 Identities=8% Similarity=0.136 Sum_probs=9.6
Q ss_pred CCeEEEEEeecC
Q psy7331 128 KKEITVSYFTKK 139 (139)
Q Consensus 128 ~~~l~VA~~~~~ 139 (139)
---+||||+|++
T Consensus 43 ~PAVwVawlG~~ 54 (151)
T COG5003 43 LPAVWVAWLGSV 54 (151)
T ss_pred Cchhheeecccc
Confidence 567899999874
No 43
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=27.77 E-value=73 Score=14.50 Aligned_cols=16 Identities=6% Similarity=0.233 Sum_probs=11.5
Q ss_pred EEEEEEEcCCCeEEEE
Q psy7331 119 EVMAILKTLKKEITVS 134 (139)
Q Consensus 119 a~v~li~~~~~~l~VA 134 (139)
.+-++..+.++.|||+
T Consensus 6 ~I~~i~~D~~G~lWig 21 (24)
T PF07494_consen 6 NIYSIYEDSDGNLWIG 21 (24)
T ss_dssp CEEEEEE-TTSCEEEE
T ss_pred eEEEEEEcCCcCEEEE
Confidence 4556777789999987
No 44
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=27.27 E-value=30 Score=24.37 Aligned_cols=13 Identities=31% Similarity=0.595 Sum_probs=10.7
Q ss_pred eEEEEEeC-CCchH
Q psy7331 51 SLFAVYDG-HGGSE 63 (139)
Q Consensus 51 ~~fgVfDG-HgG~~ 63 (139)
..+|.||| |-||.
T Consensus 3 v~iG~FDgvH~GH~ 16 (180)
T cd02064 3 VAIGNFDGVHLGHQ 16 (180)
T ss_pred EEEecCCccCHHHH
Confidence 36899999 88984
No 45
>PF06628 Catalase-rel: Catalase-related immune-responsive; InterPro: IPR010582 Catalases (1.11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen, serving to protect cells from its toxic effects []. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. Most catalases are mono-functional, haem-containing enzymes, although there are also bifunctional haem-containing peroxidase/catalases (IPR000763 from INTERPRO) that are closely related to plant peroxidases, and non-haem, manganese-containing catalases (IPR007760 from INTERPRO) that are found in bacteria []. This entry represents a small conserved region within catalase enzymes that carries the immune-responsive amphipathic octa-peptide that is recognised by T cells [].; PDB: 2CAH_A 1NM0_A 1H7K_A 1E93_A 1H6N_A 3HB6_A 2CAG_A 1M85_A 1MQF_A 1A4E_C ....
Probab=26.11 E-value=1.5e+02 Score=17.39 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=26.0
Q ss_pred HHHHhHHHHHhccccCccc-HHHHHHHHHHHHHHHhhhh
Q psy7331 68 TSQHLPEFIKKTEQFKKGN-YKQALIDAFMEFDESLIKD 105 (139)
Q Consensus 68 ~~~~l~~~l~~~~~~~~~~-~~~al~~af~~~d~~l~~~ 105 (139)
-+++|...+......-... +++....-|..+|..+.+.
T Consensus 24 er~~lv~nia~~l~~v~~~~i~~r~l~~f~~vd~~lg~~ 62 (68)
T PF06628_consen 24 ERERLVENIAGHLSGVSDEEIQERVLAYFYKVDPDLGQR 62 (68)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHccCChhhHHHHHHHHHHHhCHHHHHH
Confidence 3566666666655433344 8889999999999998764
No 46
>PF08252 Leader_CPA1: arg-2/CPA1 leader peptide ; InterPro: IPR013203 In this family there are leaders peptides involved in the regulation of the glutaminase subunit (small subunit) of arginine-specific carbamoyl phosphate synthetase. In Neurospora crassa it is a small upstream ORF of 24 codons above the arg-2 locus []. In yeast it is the leader peptide of the CPA1 gene. The 5' region of CPA1 mRNA contains a 25 codon upstream open reading frame. The leader peptide, the product of the upstream open reading frame, plays an essential, negative role in the specific repression of CPA1 by arginine [].; PDB: 2XL1_A.
Probab=25.53 E-value=77 Score=14.75 Aligned_cols=14 Identities=21% Similarity=0.169 Sum_probs=9.0
Q ss_pred HHHHHHHHHhHHHH
Q psy7331 63 EVAVYTSQHLPEFI 76 (139)
Q Consensus 63 ~~a~~~~~~l~~~l 76 (139)
-+.+|+++++++..
T Consensus 9 t~qDYiSDhiWk~~ 22 (24)
T PF08252_consen 9 TSQDYISDHIWKAS 22 (24)
T ss_dssp --HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhh
Confidence 35688888887653
No 47
>PRK01816 hypothetical protein; Provisional
Probab=25.50 E-value=53 Score=22.67 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=17.3
Q ss_pred cHHHHHHHHHHHHHHHhhhh
Q psy7331 86 NYKQALIDAFMEFDESLIKD 105 (139)
Q Consensus 86 ~~~~al~~af~~~d~~l~~~ 105 (139)
++.+.|++||+.+|+.+.++
T Consensus 123 dLA~lLk~Af~~ld~~f~~~ 142 (143)
T PRK01816 123 ALADLLKRAFKQLDKTFLDD 142 (143)
T ss_pred HHHHHHHHHHHHcCHHHHhh
Confidence 57899999999999998753
No 48
>KOG4398|consensus
Probab=24.83 E-value=29 Score=26.84 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=16.1
Q ss_pred EEEeCCCchHH--------------HHHHHHHhHHHHHh
Q psy7331 54 AVYDGHGGSEV--------------AVYTSQHLPEFIKK 78 (139)
Q Consensus 54 gVfDGHgG~~~--------------a~~~~~~l~~~l~~ 78 (139)
=|||||+|+.+ .+|.+..++..+.+
T Consensus 135 wv~~~~~~~~i~~~i~gp~~slp~ngdY~ay~~w~~~~k 173 (359)
T KOG4398|consen 135 WVCDDHMSDKINFIIPGPTQSLPINGDYIAYKLWAKLAK 173 (359)
T ss_pred EEEcCCCCcceeEEecCCcccccCCCchHHHHHHHhhhh
Confidence 38999998553 25666655555544
No 49
>PF13501 SoxY: Sulfur oxidation protein SoxY; PDB: 2OXG_B 2OX5_B 2OXH_F 2NNF_A 2NNC_B.
Probab=24.60 E-value=1.3e+02 Score=19.64 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=17.5
Q ss_pred CCCCeEEEEEEEcCCCeEEEE
Q psy7331 114 LKKENEVMAILKTLKKEITVS 134 (139)
Q Consensus 114 ~~GsTa~v~li~~~~~~l~VA 134 (139)
+.++|.+.|+.+..++++|++
T Consensus 80 ~~~~s~V~ava~t~dG~~~~a 100 (111)
T PF13501_consen 80 MAQTSPVRAVAETSDGKLYMA 100 (111)
T ss_dssp -SSSEEEEEEEEETTTEEEEE
T ss_pred ecCcccEEEEEEecCCeEEEe
Confidence 568999999999779999986
No 50
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=23.78 E-value=68 Score=21.82 Aligned_cols=22 Identities=41% Similarity=0.671 Sum_probs=12.9
Q ss_pred EEEEeCCCchH---HHHHHHHHhHH
Q psy7331 53 FAVYDGHGGSE---VAVYTSQHLPE 74 (139)
Q Consensus 53 fgVfDGHgG~~---~a~~~~~~l~~ 74 (139)
.+|-||.||.- .-+.+++.+++
T Consensus 2 I~VIDGQGGGiG~~iv~~lr~~~~~ 26 (131)
T PF12953_consen 2 IAVIDGQGGGIGKQIVEKLRKELPE 26 (131)
T ss_pred EEEEeCCCChhHHHHHHHHHHhCCC
Confidence 47999999643 33344444443
No 51
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=21.05 E-value=2.2e+02 Score=17.70 Aligned_cols=39 Identities=23% Similarity=0.446 Sum_probs=19.8
Q ss_pred CCCCcceEEeeeecCCCeeEEEEEeCCCc--hHHHHHHHHHh
Q psy7331 33 RIYQEDAHNVIIDFDENKSLFAVYDGHGG--SEVAVYTSQHL 72 (139)
Q Consensus 33 R~~mED~~~v~~~~~~~~~~fgVfDGHgG--~~~a~~~~~~l 72 (139)
+...+|--++..+ +......-+.-||-| ..-|+.+++.|
T Consensus 33 ~dK~~DPaVvvvd-e~g~~vIplL~GH~GGan~lA~~iA~~l 73 (84)
T PF11760_consen 33 KDKDTDPAVVVVD-EDGRFVIPLLGGHRGGANELARQIAELL 73 (84)
T ss_dssp --TTT--EEEEE--TT--EEEEEE-TTTT-HHHHHHHHHHHT
T ss_pred cccCCCCCEEEEe-CCCCEEEEeccCCcchHHHHHHHHHHHh
Confidence 4456676666554 234457889999997 55565555543
No 52
>PF01693 Cauli_VI: Caulimovirus viroplasmin; InterPro: IPR011320 This entry represents the N-terminal domain of RNase HI, which has a 3-layer alpha/beta/alpha structure []. This domain is lacking in retroviral and prokaryotic enzymes, but shows a striking structural similarity to the ribosomal protein L9 N-terminal domain, and may function as a regulatory RNA-binding module. However, the topology of this domain differs from structures of known RNA binding domains such as the double-stranded RNA binding domain (dsRBD), the hnRNP K homology (KH) domain and the RNP motif. Eukaryotic RNases HI possess either one or two copies of this small N-terminal domain, in addition to the well-conserved catalytic RNase H domain. RNase HI belongs to the family of ribonuclease H enzymes that recognise RNA:DNA hybrids and degrade the RNA component. ; PDB: 1QHK_A 3BSU_C.
Probab=20.38 E-value=75 Score=16.88 Aligned_cols=9 Identities=33% Similarity=0.903 Sum_probs=6.9
Q ss_pred EEEEEeCCC
Q psy7331 52 LFAVYDGHG 60 (139)
Q Consensus 52 ~fgVfDGHg 60 (139)
+|+|++|+.
T Consensus 2 ~YaV~~G~~ 10 (44)
T PF01693_consen 2 YYAVFNGRQ 10 (44)
T ss_dssp EEEEECSSS
T ss_pred EEEEEeCCC
Confidence 678888876
No 53
>PF09369 DUF1998: Domain of unknown function (DUF1998); InterPro: IPR018973 This entry represents a family of DEAD/DEAH-box-containing family of helicases. It includes Hrq1 from Saccharomyces, a putative RecQ helicase []. RecQ helicases are involved in maintaining genomic integrity.
Probab=20.10 E-value=1.8e+02 Score=17.46 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=22.3
Q ss_pred CeeEEEEEeCC-CchHHHHHHHHHhHHHHHhccccCcccHHHHHHHHHHHHH
Q psy7331 49 NKSLFAVYDGH-GGSEVAVYTSQHLPEFIKKTEQFKKGNYKQALIDAFMEFD 99 (139)
Q Consensus 49 ~~~~fgVfDGH-gG~~~a~~~~~~l~~~l~~~~~~~~~~~~~al~~af~~~d 99 (139)
....+-+||.. ||...+.-+.+. ..+.+.|++|+..+.
T Consensus 34 ~~~~i~lyD~~~GG~G~~~~l~~~-------------~~~~~ll~~A~~~~~ 72 (84)
T PF09369_consen 34 GPPRIFLYDTVPGGAGYAERLFER-------------ERFEELLRRALELLE 72 (84)
T ss_pred CccEEEEEECCCCchhhHhhhcCh-------------hHHHHHHHHHHHHHH
Confidence 34466689997 577766655433 234555566655544
Done!