RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7331
(139 letters)
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI,
protei structure initiative, NEW YORK SGX research
center for STRU genomics; 1.70A {Anopheles gambiae}
Length = 304
Score = 166 bits (421), Expect = 4e-52
Identities = 60/121 (49%), Positives = 87/121 (71%)
Query: 1 MGAYLSQPITKKESTNHEGSNLTCGASSMQGWRIYQEDAHNVIIDFDENKSLFAVYDGHG 60
+GAYLS+P+T K+S++ L G+SSMQGWRI QEDAHN I++FD+ S FAVYDGHG
Sbjct: 2 LGAYLSEPLTTKDSSDESNEFLASGSSSMQGWRISQEDAHNCILNFDDQCSFFAVYDGHG 61
Query: 61 GSEVAVYTSQHLPEFIKKTEQFKKGNYKQALIDAFMEFDESLIKDEVMAILKTLKKENEV 120
G+EVA Y S HLP F+K E + + +++AL +AF+ FD +L++++V+ LK L ++
Sbjct: 62 GAEVAQYCSLHLPTFLKTVEAYGRKEFEKALKEAFLGFDATLLQEKVIEELKVLSGDSAG 121
Query: 121 M 121
Sbjct: 122 S 122
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase,
PSI-2, protein structure initiative; 1.82A {Homo
sapiens}
Length = 307
Score = 137 bits (347), Expect = 5e-41
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 1 MGAYLSQPITKKESTNHEGSNLTCGASSMQGWRIYQEDAHNVIIDF---DENKSLFAVYD 57
+GA+L +P T+K + + G+ L G SSMQGWR+ EDAH ++ E+ S FAVYD
Sbjct: 3 LGAFLDKPKTEKHNAHGAGNGLRYGLSSMQGWRVEMEDAHTAVVGIPHGLEDWSFFAVYD 62
Query: 58 GHGGSEVAVYTSQHLPEFIKKTEQFKKGNYKQALIDAFMEFDESLIKDEVMAILKTLKKE 117
GH GS VA Y S HL E I E F+ + ++ +E ++ I+ + I + ++
Sbjct: 63 GHAGSRVANYCSTHLLEHITTNEDFRAAGKSGSALELSVENVKNGIRTGFLKIDEYMRNF 122
Query: 118 NE 119
++
Sbjct: 123 SD 124
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin,
hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1
d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Length = 382
Score = 136 bits (345), Expect = 5e-40
Identities = 46/116 (39%), Positives = 62/116 (53%), Gaps = 10/116 (8%)
Query: 1 MGAYLSQPITKKESTNHEGSNLTCGASSMQGWRIYQEDAHNVIIDF---DENKSLFAVYD 57
MGA+L +P +K + +G+ L G SSMQGWR+ EDAH +I E+ S FAVYD
Sbjct: 1 MGAFLDKPKMEKHNAQGQGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSGLESWSFFAVYD 60
Query: 58 GHGGSEVAVYTSQHLPEFIKKTEQFKKG-------NYKQALIDAFMEFDESLIKDE 106
GH GS+VA Y +HL + I + FK N K + F+E DE +
Sbjct: 61 GHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMS 116
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics,
protein structure initiative; 2.04A {Toxoplasma gondii}
Length = 324
Score = 114 bits (288), Expect = 4e-32
Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 22/120 (18%)
Query: 8 PITKKESTNHEGSNLTCGASSMQGWRIYQEDAHNVIIDF---DENKSLFAVYDGHGGSEV 64
P + G R +QED + ++ + F V+DG G
Sbjct: 8 PTIHVPLPPTSYPAFDAAIFTDIGGRKHQEDRFTLCPQLVPGRDDCAFFGVFDGTVGDFA 67
Query: 65 AVYTSQHLPEFIKKTEQFKKGN-------------------YKQALIDAFMEFDESLIKD 105
+ + + + +++ QA+ D + D L+K
Sbjct: 68 SENVKDLVVPQLISSPAWQEVTEMLRSDVPATEVDEKLPQLLDQAVDDMYKNADNELVKM 127
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium,
sulfate structural genomics, PSI-2, protein structure
initiative; 1.90A {Toxoplasma gondii}
Length = 364
Score = 110 bits (276), Expect = 3e-30
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 10 TKKESTNHEGSNLTCGASSMQGWRIYQEDAHNVIIDF--DENKSLFAVYDGHGGSEVAVY 67
+ K+ T A++M G R EDA V N + AV+DGH G + Y
Sbjct: 1 SLKKVITVNEWYTTTVAATMLGRRPTDEDAILVSAPATSRPNVRIKAVFDGHAGEATSQY 60
Query: 68 TSQHLPEFIKKTEQFKKGNYKQALIDAFMEFDESL 102
++H + + K +F K+A + E L
Sbjct: 61 CAKHAAKHLGKLSEFTFAEVKKACLSLDAEIIRKL 95
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting
protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding
protein, protein binding; 2.25A {Homo sapiens} PDB:
2pom_A 2pop_A
Length = 401
Score = 111 bits (278), Expect = 3e-30
Identities = 18/140 (12%), Positives = 54/140 (38%), Gaps = 12/140 (8%)
Query: 1 MGAYLSQPITKKESTNHEGSNLTCGASSMQGWRIYQEDAHN-------VIIDFDENKSLF 53
+ QP + S + G++S + + + + + + N L+
Sbjct: 8 LLQSEQQPSWTDDLPLCHLSGV--GSASNRSYSADGKGTESHPPEDSWLKFRSENNCFLY 65
Query: 54 AVYDGHGGSEVAVYTSQHLPEFIKKTEQFKK---GNYKQALIDAFMEFDESLIKDEVMAI 110
V++G+ G+ V + +Q L + + + + ++ L+ AF + S ++ A+
Sbjct: 66 GVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLESIDDAL 125
Query: 111 LKTLKKENEVMAILKTLKKE 130
+ ++++ + +
Sbjct: 126 AEKASLQSQLPEGVPQHQLP 145
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2,
protein structure initiative, NEW YORK SGX research
center for structural genomics; 2.25A {Homo sapiens}
Length = 274
Score = 104 bits (262), Expect = 1e-28
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 20 SNLTCGASSMQGWRIYQEDAHNVIIDFDENKSLFAVYDGHGGSEVAVYTSQHLPEFIKKT 79
S G +S G R ED + FAVYDGHGG A + H+ + I
Sbjct: 6 SLENVGCASQIGKRKENEDRF-DFAQLTDEVLYFAVYDGHGGPAAADFCHTHMEKCIMDL 64
Query: 80 EQFKKGNYKQALIDAFMEFDESLIKDE 106
+K N + L AF+E D++
Sbjct: 65 LPKEK-NLETLLTLAFLEIDKAFSSHA 90
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted
catalysis, dehydrogenase phosphatase, hydrolase; 2.38A
{Homo sapiens} PDB: 3qht_A 1l2n_A
Length = 389
Score = 104 bits (261), Expect = 9e-28
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 2/97 (2%)
Query: 10 TKKESTNHEGSNLTCGASSMQGWRIYQEDAHNVIIDFDENKSLFAVYDGHGGSEVAVYTS 69
+ + S G +S G R ED + FAVYDGHGG A +
Sbjct: 110 FQAGKPIPKISLENVGCASQIGKRKENEDRF-DFAQLTDEVLYFAVYDGHGGPAAADFCH 168
Query: 70 QHLPEFIKKTEQFKKGNYKQALIDAFMEFDESLIKDE 106
H+ + I +K N + L AF+E D++
Sbjct: 169 THMEKCIMDLLPKEK-NLETLLTLAFLEIDKAFSSHA 204
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling
pathway, cell membr hydrolase, magnesium, manganese,
metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis
thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B*
Length = 316
Score = 98.0 bits (244), Expect = 1e-25
Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 25/112 (22%)
Query: 20 SNLTCGASSMQGWRIYQEDAHNVIIDF---------------DENKSLFAVYDGHGGSEV 64
S G +S+ G R EDA + I F F VYDGHGGS+V
Sbjct: 7 SVPLYGFTSICGRRPEMEDAVSTIPRFLQSSSGSMLDGRFDPQSAAHFFGVYDGHGGSQV 66
Query: 65 AVYTSQHLPEFIKKTEQFKKG----------NYKQALIDAFMEFDESLIKDE 106
A Y + + + + +K +K+AL ++F+ D +
Sbjct: 67 ANYCRERMHLALAEEIAKEKPMLSDGDTWLEKWKKALFNSFLRVDSEIESVA 118
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein
structure initiative, NEW YORK structural research
consortium, nysgxrc; 2.71A {Toxoplasma gondii}
Length = 377
Score = 95.5 bits (237), Expect = 2e-24
Identities = 13/111 (11%), Positives = 39/111 (35%), Gaps = 7/111 (6%)
Query: 18 EGSNLTCGASSMQGWRIYQEDAHNVIIDF-------DENKSLFAVYDGHGGSEVAVYTSQ 70
E C +++ + R E H+ + + A++DG G A++ +Q
Sbjct: 9 EEGRTVCASATSRNRRPTSESPHSDDVVVVEGMLRGRPETRVHAMFDGFQGRHSAMWLAQ 68
Query: 71 HLPEFIKKTEQFKKGNYKQALIDAFMEFDESLIKDEVMAILKTLKKENEVM 121
++ ++ + + + + + A++ ++ E +
Sbjct: 69 NVMNYLNDLRDVNEEEITRQFERMDGDLRAANLPGGSSALIIFVRYEKKPT 119
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain,
PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C
protein phosphatase; HET: A8S; 1.80A {Arabidopsis
thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B*
Length = 337
Score = 95.0 bits (236), Expect = 2e-24
Identities = 30/146 (20%), Positives = 43/146 (29%), Gaps = 33/146 (22%)
Query: 10 TKKESTNHEGSNLTCGASSMQGWRIYQEDAHNVIIDF--------------------DEN 49
S G S+QG R EDA V F
Sbjct: 2 AMGRSVYELDCIPLWGTVSIQGNRSEMEDAFAVSPHFLKLPIKMLMGDHEGMSPSLTHLT 61
Query: 50 KSLFAVYDGHGGSEVAVYTSQHLPEFIKKTEQFKK-------------GNYKQALIDAFM 96
F VYDGHGG +VA Y L + + + K + + F+
Sbjct: 62 GHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFL 121
Query: 97 EFDESLIKDEVMAILKTLKKENEVMA 122
D + A++ + K E +A
Sbjct: 122 TVDGEIEGKIGRAVVGSSDKVLEAVA 147
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting
protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles
gambiae}
Length = 358
Score = 83.5 bits (206), Expect = 4e-20
Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 4/98 (4%)
Query: 12 KESTNHEGSNLTCGASSMQGWRIYQEDAHNVIIDFDENKSLFAVYDGHGGSEVAVYTSQH 71
++ E N + D + D N SL+A+ GH G VA Q
Sbjct: 13 NQTGVGEAINQIYKDDGRRCEGYESRDKK-CLCISDNNTSLYAILSGHNGVTVAENALQE 71
Query: 72 LPEFIKKTEQFK---KGNYKQALIDAFMEFDESLIKDE 106
+ + + K+ + +FM ++
Sbjct: 72 MAAELLLGQLNVCNTDEAVKELIRQSFMSVEKGYFDSI 109
>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate
dehydrogenase phosphatase 1, catalytic subunit, PDP1C,
hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A
Length = 467
Score = 67.1 bits (163), Expect = 3e-14
Identities = 19/113 (16%), Positives = 31/113 (27%), Gaps = 16/113 (14%)
Query: 4 YLSQPITKKESTNHEGS-----------NLTCGASSMQ-GWRIYQEDAHNVIIDFDENKS 51
YL+ P +E S + G S + ED +
Sbjct: 8 YLTPPQVNSILKANEYSFKVPEFDGKNVSSILGFDSNRLPANAPIEDRRSATTCLQTRGM 67
Query: 52 LFAVYDGHGGSEVAVYTSQHLP----EFIKKTEQFKKGNYKQALIDAFMEFDE 100
L V+DGH G + S+ L + E + A + +
Sbjct: 68 LLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLLEIENAVESGRALLPILQ 120
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 9e-06
Identities = 17/113 (15%), Positives = 38/113 (33%), Gaps = 30/113 (26%)
Query: 47 DENKSLFAVYDGHGGSEVAVYTSQHLP-----------EFIKKTEQFKKGNYKQ--ALID 93
DE KSL Y ++ P + + + +K N + +I+
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 94 AFME----------------FDESL-IKDEVMAILKTLKKENEVMAILKTLKK 129
+ + F S I +++++ +++VM ++ L K
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Score = 29.1 bits (64), Expect = 0.56
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 70 QHLPEFIKKTEQFKKGNYKQALIDAFME-FDESLIKDEVMAILKTLKKENEVMAILKTLK 128
H +F Q++ + DAF++ FD ++D +IL + E+ I+ K
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL----SKEEIDHIIM-SK 58
Query: 129 KEITVSYF 136
++ +
Sbjct: 59 DAVSGTLR 66
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 3e-05
Identities = 36/152 (23%), Positives = 58/152 (38%), Gaps = 39/152 (25%)
Query: 1 MGAYLSQPITKKESTNHEGS---------NLTCGASSMQG--WRIYQEDAHNVIIDFDEN 49
M AY ++P+T +H GS AS +Q +I E D DE
Sbjct: 1 MDAYSTRPLT----LSH-GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD-DEP 54
Query: 50 KS---LFAVYDGHGGSEVAVYTSQHLPEFIKKTEQFKKGNYKQALIDAFMEFDES-LIKD 105
+ L + G+ V+ E K G + Q L EF+ L +
Sbjct: 55 TTPAELVGKFLGY----VS-----------SLVEPSKVGQFDQVLNLCLTEFENCYLEGN 99
Query: 106 EVMAILKTLKKENEVMAILKTLKKEITVSYFT 137
++ A+ L +EN+ ++K KE+ +Y T
Sbjct: 100 DIHALAAKLLQENDT-TLVK--TKELIKNYIT 128
Score = 37.0 bits (85), Expect = 0.001
Identities = 24/150 (16%), Positives = 40/150 (26%), Gaps = 50/150 (33%)
Query: 1 MG--AYLSQPITKK---ESTNHEGSNLTCGASSMQGWRIYQEDAHNVIIDFDENKSLFAV 55
MG Y + + + NH G+ I I + +L
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTY--------GFSILD-------IVINNPVNLTIH 1675
Query: 56 YDGHGGSEVAV-YTSQHLPEFIKKTEQFKKGNYKQALIDAFMEFDESLIK------DEVM 108
+ G G + Y++ E G K I F E +E ++
Sbjct: 1676 FGGEKGKRIRENYSAM-------IFETIVDGKLKTEKI--FKEINEHSTSYTFRSEKGLL 1726
Query: 109 --------AILKTLKKENEVMAILKTLKKE 130
A+ E A + LK +
Sbjct: 1727 SATQFTQPALTLM-----E-KAAFEDLKSK 1750
Score = 30.0 bits (67), Expect = 0.30
Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 56/150 (37%)
Query: 17 H---EGSNLTCGASSMQGWRIYQEDA-----------HNVIIDFDENKSLFAVYDGHGGS 62
H E + L A M I E + + +S + + + G
Sbjct: 1762 HSLGEYAALASLADVMS---I--ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR 1816
Query: 63 EVAVYTSQHLPEFIKKTEQFKKG------NY------------KQALIDAFMEFDESLIK 104
A ++ + L +++ + + G NY +AL
Sbjct: 1817 VAASFSQEALQYVVERVGK-RTGWLVEIVNYNVENQQYVAAGDLRAL------------- 1862
Query: 105 DEVMAILKTLKKENEVMAILKTLKKEITVS 134
D V +L +K + + ++ + ++S
Sbjct: 1863 DTVTNVLNFIKLQK-----IDIIELQKSLS 1887
Score = 29.2 bits (65), Expect = 0.50
Identities = 19/136 (13%), Positives = 41/136 (30%), Gaps = 34/136 (25%)
Query: 4 YLSQPITKKESTNHEGSNLTCGASSMQGWRIYQEDAHNVIIDFDENKSLFAVYDGHGGSE 63
++ + K+ S L + N L A++ G G ++
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVG-------------------EGNAQLVAIFGGQGNTD 167
Query: 64 VAVYTSQHLPEFIKKTEQFKKGNYKQALIDAFMEFDESLIKDEVMAILKTLKKENEVMAI 123
Y E + ++ Y L+ ++F + + + L K + + I
Sbjct: 168 --DY----FEELR---DLYQT--Y-HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 124 LKTLKKEIT---VSYF 136
L+ L+ Y
Sbjct: 216 LEWLENPSNTPDKDYL 231
Score = 28.1 bits (62), Expect = 1.3
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 14/67 (20%)
Query: 4 YLSQPITKKESTNHEGSNLTCGASSMQGWRIYQEDAHNVIIDFDENKSL-FAVYDGHGGS 62
+L P+ S H S+L AS + +D + F+ K + VYD GS
Sbjct: 420 FL--PVA---SPFH--SHLLVPASDLI-----NKDLVKNNVSFN-AKDIQIPVYDTFDGS 466
Query: 63 EVAVYTS 69
++ V +
Sbjct: 467 DLRVLSG 473
>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family
phosphatase, hydrolase; 1.28A {Synechococcus elongatus}
PDB: 2j86_A 2y09_A 2xzv_A
Length = 240
Score = 32.6 bits (75), Expect = 0.024
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
Query: 37 EDAHNVIIDFDENKSLFAVYDGHGG-------SEVAVYTSQHLPEFIKKTEQFKKGNYKQ 89
+DA ID ++++ F V DG GG S +AV H+ ++++ + + +
Sbjct: 17 QDA--FYID-EKHQRFFIVADGMGGHAGGEEASRLAV---DHIRQYLETHLEDLQHDPVT 70
Query: 90 ALIDAFME 97
L AF+
Sbjct: 71 LLRQAFLA 78
>2kw7_A Conserved domain protein; structural genomics, northeast structural
genomics consortiu PSI-2, protein structure initiative;
NMR {Porphyromonas gingivalis}
Length = 157
Score = 31.7 bits (72), Expect = 0.040
Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 32 WRIYQEDAHN---VIIDFDENKSLFAVYDGHGGSEVAVYTSQHLPEFIKKTEQFKKGNYK 88
W + E +N +++ D+ + F G G S+ + + + F+ GNY
Sbjct: 75 WGVGNEKNNNGLLLVLVLDQRRVRFETGYGLEGYLPDGLLSRIIHDRM--IPHFRSGNYA 132
Query: 89 QALIDAFMEFDESL 102
+ L + + + L
Sbjct: 133 EGLSEGVLAVQQVL 146
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR
genomics, protein structure initiative; 1.95A
{Staphylococcus haemolyticus}
Length = 305
Score = 30.2 bits (69), Expect = 0.18
Identities = 17/127 (13%), Positives = 32/127 (25%), Gaps = 44/127 (34%)
Query: 31 GWRIYQEDAHNVIIDFDENKSLFAVYDGHGGSEVAVYTSQHL-------------PEFIK 77
G + E+ ++ D N + Q+L
Sbjct: 113 GKSLNYENIIHIDND---NI---------DAAYQLT---QYLYHLGHRHILFLQESGHYA 157
Query: 78 KTEQFKKGNYKQALIDAFMEFDESLIKD------EVMAILKTLKKE-------NEVMAI- 123
TE G +KQ D + D +IK + + ++ +
Sbjct: 158 VTEDRSVG-FKQYCDDVKISNDCVVIKSMNDLRDFIKQYCIDASHMPSVIITSDVMLNMQ 216
Query: 124 -LKTLKK 129
L L +
Sbjct: 217 LLNVLYE 223
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2,
protein structure initiative; 2.30A {Staphylococcus
saprophyticus subsp}
Length = 288
Score = 29.8 bits (68), Expect = 0.23
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 87 YKQALIDAFMEFDESLIKDEVMAILKTLKKENEVMAILKTLKKEIT 132
Y +A+ + + + SLI + + + A L K I
Sbjct: 144 YNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSKGIK 189
>2rau_A Putative esterase; NP_343859.1, putative lipase, structural
genomics, joint CEN structural genomics, JCSG; HET: PG4
UNL; 1.85A {Sulfolobus solfataricus P2}
Length = 354
Score = 29.6 bits (65), Expect = 0.34
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 31 GWRIYQEDAHNVIIDF-DENKSLFAVYDGH--GGSEVAVYTSQHLPEFIKK 78
GW + D V+ ++ G GG Y+S + IK
Sbjct: 122 GWSTWISDIKEVVSFIKRDSGQERIYLAGESFGGIAALNYSSLYWKNDIKG 172
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 29.3 bits (66), Expect = 0.39
Identities = 23/94 (24%), Positives = 33/94 (35%), Gaps = 24/94 (25%)
Query: 24 CGASSMQGWRIYQ-----EDAHNVIIDFDENKSLFAVYDGH--GGSEVAVYTSQHLPEFI 76
G SS Q W Y+ D H ++ + G GG EVA Y S + + I
Sbjct: 65 FGKSS-QPWEGYEYDTFTSDLHQLLEQLELQN---VTLVGFSMGGGEVARYISTYGTDRI 120
Query: 77 KK-------------TEQFKKGNYKQALIDAFME 97
+K +E +G A I+ F
Sbjct: 121 EKVVFAGAVPPYLYKSEDHPEGALDDATIETFKS 154
>1wbf_A Protein (agglutinin); lectin (agglutinin), legume lectin, protein
crystallography, group specificity, saccharide free
form; HET: NAG; 2.30A {Psophocarpus tetragonolobus}
SCOP: b.29.1.1 PDB: 2d3s_A* 2dtw_A* 1wbl_A* 2dty_A*
2du0_A* 2du1_A* 2e51_A* 2e53_A* 2zmk_A* 2zml_A* 2zmn_A*
2e7t_A* 2e7q_A*
Length = 242
Score = 28.6 bits (63), Expect = 0.59
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 14 STNHEGSNLTCGASSMQ-GWRIYQEDAHNVIIDFDENKSLFAVY 56
H G ++ S+ + + NV+I +D + + V
Sbjct: 134 QIPHIGIDVNSVISTKTVPFTLDNGGIANVVIKYDASTKILHVV 177
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural
genomics, sugar-binding transcriptional regulator
structure initiative, PSI-2; HET: MSE; 2.45A
{Escherichia coli K12}
Length = 338
Score = 28.6 bits (65), Expect = 0.61
Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 37/121 (30%)
Query: 42 VIID-FDENKSLFAVY-DGHGGSEVAVYTSQHL-------------PEFIKKTEQFKKGN 86
++++ S +V+ D S AV L + + G
Sbjct: 147 MVLNRRLRKNSSHSVWCDHKQTSFNAV---AELINAGHQEIAFLTGSMDSPTSIERLAG- 202
Query: 87 YKQALIDAFMEFDESLIKD---------EVMAILKTLKKE-------NEVMAI--LKTLK 128
YK AL + +E LI + E + +L + N+ MAI +K L
Sbjct: 203 YKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVASNDDMAIGAMKALH 262
Query: 129 K 129
+
Sbjct: 263 E 263
>1f9k_A Acidic lectin; legume lectin, glycosylated protein, H-antigenic
specificity agglutinin, sugar binding protein; HET: NAG
MAN AMG; 3.00A {Psophocarpus tetragonolobus} SCOP:
b.29.1.1 PDB: 1fay_A*
Length = 238
Score = 28.6 bits (63), Expect = 0.63
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 14 STNHEGSNLTCGASS-MQGWRIYQEDAHNVIIDFDENKSLFAVY 56
H G ++ SS +++ NV+I +D + V
Sbjct: 134 QVPHIGIDVNSIVSSKTLHFQLENGGVANVVIKYDSPTKILNVV 177
>1qpz_A PURA, protein (purine nucleotide synthesis repressor);
transcription regulation, DNA-binding, purine
biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli}
SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A*
1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A*
1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A*
2pud_A* 1jfs_A* 1jh9_A* ...
Length = 340
Score = 28.2 bits (64), Expect = 0.71
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 28/86 (32%)
Query: 31 GWRIYQEDAHNVIIDFDENKSLFAVYDGHGGSEVAVYTSQHL-------------PEFIK 77
W + D + +ID + G +A ++L P
Sbjct: 145 DWGEAKADFTDAVID-----------NAFEGGYMAG---RYLIERGHREIGVIPGPLERN 190
Query: 78 KTEQFKKGNYKQALIDAFMEFDESLI 103
G + +A+ +A ++ ES I
Sbjct: 191 TGAGRLAG-FMKAMEEAMIKVPESWI 215
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein,
oxidoreductase; 2.80A {Pisum sativum}
Length = 171
Score = 28.0 bits (63), Expect = 0.74
Identities = 7/19 (36%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 68 TSQHLPEFIKKTEQFK-KG 85
+S+H+P + ++FK KG
Sbjct: 60 SSKHVPPYKHNIDKFKAKG 78
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor
structure escherichia coli, struct genomics, PSI-2; HET:
FRU; 2.00A {Escherichia coli}
Length = 296
Score = 28.3 bits (64), Expect = 0.75
Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 37/121 (30%)
Query: 42 VIID-FDENKSLFAVY-DGHGGSEVAVYTSQHL-------------PEFIKKTEQFKKGN 86
++++ S +V+ D S AV L + + G
Sbjct: 105 MVLNRRLRKNSSHSVWCDHKQTSFNAV---AELINAGHQEIAFLTGSMDSPTSIERLAG- 160
Query: 87 YKQALIDAFMEFDESLIKD---------EVMAILKTLKKE-------NEVMAI--LKTLK 128
YK AL + +E LI + E + +L + N+ MAI +K L
Sbjct: 161 YKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVASNDDMAIGAMKALH 220
Query: 129 K 129
+
Sbjct: 221 E 221
>2fmd_A Lectin, agglutinin, BMA; legume lectin, beta sandwich,
protein-carbohydrate complex, sugar binding protein;
HET: MAN; 1.90A {Bowringia mildbraedii}
Length = 240
Score = 28.3 bits (62), Expect = 0.85
Identities = 9/69 (13%), Positives = 20/69 (28%), Gaps = 6/69 (8%)
Query: 14 STNHEGSNLTCGASSM-QGWRIYQEDAHNVIIDFDENKSLFAVYDGHGGS-----EVAVY 67
+ H G ++ S W I ++ +V + S V
Sbjct: 140 NYRHIGIDVNSIRSKAASKWDWQNGKTATAHISYNSASKRLSVVSSYPNSSPVVVSFDVE 199
Query: 68 TSQHLPEFI 76
+ P+++
Sbjct: 200 LNNVBPBWV 208
>1fny_A BARK lectin, BARK agglutinin I,polypeptide A; legume lectin, jelly
roll, sugar binding protein; 1.81A {Robinia
pseudoacacia} SCOP: b.29.1.1 PDB: 1fnz_A*
Length = 237
Score = 27.8 bits (61), Expect = 0.98
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 14 STNHEGSNLTCGASSMQ-GWRIYQEDAHNVIIDFDENKSLFAVY 56
H G N+ S W + NV I ++ +
Sbjct: 137 KGRHLGINVNSIESIKTVPWNWTNGEVANVFISYEASTKSLTAS 180
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 27.8 bits (62), Expect = 1.00
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 72 LPEFIKKTEQFKKGNYKQALIDAFMEFDES----LIKDEVMAILKTLKKENE 119
E++ KG Q L F +D + + E++ I+K ++ N
Sbjct: 71 FMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINR 122
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron
transport; 2.80A {Haemophilus influenzae} SCOP:
c.47.1.1 c.47.1.10
Length = 241
Score = 27.7 bits (62), Expect = 1.00
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 68 TSQHLPEFIKKTEQFKK 84
+S HLP + + FKK
Sbjct: 50 SSSHLPRYNELAPVFKK 66
>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A
{Alvinella pompejana}
Length = 171
Score = 27.6 bits (62), Expect = 1.0
Identities = 6/18 (33%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 69 SQHLPEFIKKTEQFK-KG 85
+ H+PE++ ++FK +G
Sbjct: 59 NNHIPEYLSLYDKFKEEG 76
>1sbf_A Soybean agglutinin; lectin; HET: NAG GAL; 2.43A {Glycine max} SCOP:
b.29.1.1 PDB: 1sbd_A* 1sbe_A* 1g9f_A* 2sba_A*
Length = 253
Score = 27.8 bits (61), Expect = 1.0
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 7/70 (10%)
Query: 14 STNHEGSNLTCGAS-SMQGWRIYQEDAHNVIIDFDENKSLFAVYDGHGGS------EVAV 66
H G N+ S W + V+I +D + SL + V
Sbjct: 135 PNPHIGINVNSIRSIKTTSWDLANNKVAKVLITYDASTSLLVASLVYPSQRTSNILSDVV 194
Query: 67 YTSQHLPEFI 76
LPE++
Sbjct: 195 DLKTSLPEWV 204
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK
structural genomix research CO NYSGXRC, PSI-2, protein
structur initiative; 2.70A {Yersinia pestis}
Length = 294
Score = 27.9 bits (63), Expect = 1.0
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 17/60 (28%)
Query: 57 DGHGGSEVAVYTSQHL-------------PEFIKKTEQFKKGNYKQALIDAFMEFDESLI 103
D H G+ +AV + L I +Q +G Y Q + +A + +
Sbjct: 109 DNHAGASLAV---KRLLELGHQRIAFVSTDARISYVDQRLQG-YVQTMSEAGLMPLAGYL 164
>4f82_A Thioredoxin reductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.85A
{Burkholderia cenocepacia}
Length = 176
Score = 27.6 bits (62), Expect = 1.1
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 68 TSQHLPEFIKKTEQFKK 84
++QH+P +++ EQ +
Sbjct: 64 SAQHVPGYVEHAEQLRA 80
>3k4h_A Putative transcriptional regulator; structural genomics, protein
structure INI NEW YORK structural genomix research
consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh
391-98}
Length = 292
Score = 27.9 bits (63), Expect = 1.1
Identities = 17/122 (13%), Positives = 36/122 (29%), Gaps = 38/122 (31%)
Query: 42 VIID--FDENKSLFAVY-DGHGGSEVAVYTSQHL-------------PEFIKKTEQFKKG 85
V+I +D + V D + + ++L + T G
Sbjct: 96 VLIGKPYDRKDEITYVDNDNYTAAREVA---EYLISLGHKQIAFIGGGSDLLVTRDRLAG 152
Query: 86 NYKQALIDAFMEFDESLIKD---------EVMAILKTLKKE-------NEVMAI--LKTL 127
AL A + + I + + L L++ ++++ + L L
Sbjct: 153 -MSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIMATDDLIGLGVLSAL 211
Query: 128 KK 129
K
Sbjct: 212 SK 213
>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese,
phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A
2jft_A 2v06_A
Length = 234
Score = 27.5 bits (62), Expect = 1.1
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 20/70 (28%)
Query: 33 RIYQEDAHNVIIDFDENKSLFAVYDGHGG-----SEVAVYTSQHLPEFIKKTEQFKKGNY 87
R +DA + L+AV DG G S A+ + L
Sbjct: 18 RENNQDACLA------DGILYAVADGFGARGHHASATAL---KTLSAGFAAAPD------ 62
Query: 88 KQALIDAFME 97
+ L++A +
Sbjct: 63 RDGLLEAVQQ 72
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology,
structural genomics, NEW YORK structura genomics
research consortium; 2.20A {Sinorhizobium meliloti}
Length = 184
Score = 27.6 bits (62), Expect = 1.1
Identities = 3/17 (17%), Positives = 8/17 (47%)
Query: 68 TSQHLPEFIKKTEQFKK 84
+ HLP +++ +
Sbjct: 73 SLNHLPGYLENRDAILA 89
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 27.5 bits (61), Expect = 1.3
Identities = 8/53 (15%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 73 PEFIKKTEQFKKGNYKQALIDAFMEFDE----SLIKDEVMAILKTLKKENEVM 121
E++ +G + L F +D+ + + E++ I++++ K +
Sbjct: 79 LEYVAALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKAC 131
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold,
oxidoreductase; 1.62A {Populus trichocarpa} SCOP:
c.47.1.10
Length = 162
Score = 27.2 bits (61), Expect = 1.3
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 68 TSQHLPEFIKKTEQFKK 84
+ +H+P FI+K + K
Sbjct: 52 SLKHVPGFIEKAGELKS 68
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate
analog, DTT, oxidoreductase; 1.45A {Homo sapiens} PDB:
2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Length = 173
Score = 27.2 bits (61), Expect = 1.4
Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 68 TSQHLPEFIKKTEQFK-KG 85
+ HLP F+++ E K KG
Sbjct: 60 SKTHLPGFVEQAEALKAKG 78
>1qmo_E Mannose binding lectin, FRIL; crosslink, hematopoietic
progenitor, sugar complex; HET: MAN; 3.5A {Dolichos lab
lab} SCOP: b.29.1.1
Length = 133
Score = 27.0 bits (59), Expect = 1.6
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 14 STNHEGSNLTCGASSMQG-WRIYQEDAHNVIIDFDENKSLFAVYDGHGGSE 63
+ H G ++ S + W I ++ +V + GS+
Sbjct: 20 NYIHIGIDVNSIRSKVTAKWDWQNGKIATAHISYNSVSKRLSVTSYYAGSK 70
>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta
hydrolase fold, mutant M99T; 1.50A {Streptomyces
aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A
Length = 277
Score = 27.3 bits (61), Expect = 1.9
Identities = 23/94 (24%), Positives = 29/94 (30%), Gaps = 24/94 (25%)
Query: 24 CGASSMQGWRIYQ-----EDAHNVIIDFDENKSLFAVYDGH--GGSEVAVYTSQHLPE-- 74
G SS Q Y D + V+ D AV G G EVA Y S +
Sbjct: 61 FGQSS-QPTTGYDYDTFAADLNTVLETLDLQD---AVLVGFSTGTGEVARYVSSYGTARI 116
Query: 75 -----------FIKKTEQFKKGNYKQALIDAFME 97
F+ KT+ G Q D +
Sbjct: 117 AKVAFLASLEPFLLKTDDNPDGAAPQEFFDGIVA 150
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 27.2 bits (60), Expect = 1.9
Identities = 17/128 (13%), Positives = 39/128 (30%), Gaps = 21/128 (16%)
Query: 9 ITKKESTNHEGSNLTCGASSMQGWRIYQEDAHNVIID-FDENKSLFAVYDGHGGSEVAVY 67
+ E + G + + ++ FD++++L + + G +
Sbjct: 65 LCYDE--------VYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSED---- 112
Query: 68 TSQHLPEFIKKTEQFKKGNYKQALIDAFMEFDE----SLIKDEVMAILKTLKKENEVMAI 123
EF++ L F E D + ++E + L+ +
Sbjct: 113 ----FVEFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVED 168
Query: 124 LKTLKKEI 131
L KE+
Sbjct: 169 PAALFKEL 176
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes;
1.75A {Arenicola marina}
Length = 167
Score = 26.8 bits (60), Expect = 1.9
Identities = 5/19 (26%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 68 TSQHLPEFIKKTEQFK-KG 85
+ HLP ++++ KG
Sbjct: 48 SKTHLPGYVEQAAAIHGKG 66
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2,
NYSGXRC, STRU genomics, protein structure initiative;
2.20A {Staphylococcus aureus subsp}
Length = 295
Score = 27.2 bits (61), Expect = 2.0
Identities = 5/61 (8%), Positives = 18/61 (29%), Gaps = 18/61 (29%)
Query: 87 YKQALIDAFMEFDESLIKDE-------VMAILKTLKKE---------NEVMAI--LKTLK 128
++ +++ +E + + LK + ++ + L L
Sbjct: 153 FETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAIISLDAMLHLAILSVLY 212
Query: 129 K 129
+
Sbjct: 213 E 213
>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free
haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12
PDB: 1hl7_A*
Length = 279
Score = 27.0 bits (60), Expect = 2.0
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 11/62 (17%)
Query: 24 CGASSMQGWRIYQ-----EDAHNVIIDFDENKSLFAVYDGH--GGSEVAVYTSQHLPEFI 76
G SS + Y D H V+ D V G G E+A Y +++ E +
Sbjct: 61 FGGSS-KVNTGYDYDTFAADLHTVLETLDLRD---VVLVGFSMGTGELARYVARYGHERV 116
Query: 77 KK 78
K
Sbjct: 117 AK 118
>3gv0_A Transcriptional regulator, LACI family; transcription regulator,
PSI-II, structural genomics structure initiative; 2.35A
{Agrobacterium tumefaciens str}
Length = 288
Score = 27.2 bits (61), Expect = 2.0
Identities = 9/86 (10%), Positives = 18/86 (20%), Gaps = 29/86 (33%)
Query: 31 GWRIYQEDAHNVIIDFDENKSLFAVYDGHGGSEVAVYTSQHL-------------PEFIK 77
G + D + AV + L P
Sbjct: 96 GRSDMGIEHAFHDFD------------NEAYAYEAV---ERLAQCGRKRIAVIVPPSRFS 140
Query: 78 KTEQFKKGNYKQALIDAFMEFDESLI 103
+ +KG + + + D +
Sbjct: 141 FHDHARKG-FNRGIRDFGLTEFPIDA 165
>4dss_A Peroxiredoxin type-2; electron transport, oxidoreductase,
peroxiredoxin, alkyl hydroperoxid reductase; 2.10A
{Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A
Length = 176
Score = 26.9 bits (60), Expect = 2.1
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 68 TSQHLPEFIKKTEQFKK 84
T H+P +I ++ K
Sbjct: 63 TVSHIPGYINYLDELVK 79
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory
protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB:
1jhz_A
Length = 289
Score = 27.1 bits (61), Expect = 2.1
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 28/86 (32%)
Query: 31 GWRIYQEDAHNVIIDFDENKSLFAVYDGHGGSEVAVYTSQHL-------------PEFIK 77
W + D + +ID + G +A ++L P
Sbjct: 94 DWGEAKADFTDAVID-----------NAFEGGYMAG---RYLIERGHREIGVIPGPLERN 139
Query: 78 KTEQFKKGNYKQALIDAFMEFDESLI 103
G + +A+ +A ++ ES I
Sbjct: 140 TGAGRLAG-FMKAMEEAMIKVPESWI 164
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 26.7 bits (59), Expect = 2.2
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 73 PEFIKKTEQFKKGNYKQALIDAFMEFDE----SLIKDEVMAILKTLKKENE 119
EFI + +Q L F +D S+ K+E++ + ++ N
Sbjct: 77 LEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMFMAVQALNG 127
>3zyr_A Lectin; sugar binding protein, N-glycan; HET: NAG BMA MAN GOL;
1.65A {Platypodium elegans} PDB: 3zvx_A* 1ukg_A* 1q8o_A*
1q8q_A* 1q8s_A* 1q8v_A* 1q8p_A* 2auy_A* 2gme_A 2gmm_A*
2gmp_A* 2gn3_A* 2gn7_A* 2gnb_A* 2gnd_A* 2gnm_A* 2gnt_A
2phf_A* 2phr_A* 2pht_A* ...
Length = 261
Score = 27.1 bits (59), Expect = 2.3
Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 14 STNHEGSNLTCGASSMQG-WRIYQEDAHNVIIDFDENKSLFAVYDGHGGSE-----VAVY 67
+ H G ++ SS W + NV++ ++ + V + + V
Sbjct: 152 NYQHIGIDVNSIRSSKVVRWERREGKTLNVLVTYNPSTRTIDVVATYPDGQRYQLSHVVD 211
Query: 68 TSQHLPEFI 76
+ LPE++
Sbjct: 212 LTTILPEWV 220
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 26.5 bits (58), Expect = 2.6
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 52 LFAVYDGHGGSEVAVYTSQHLPEFIKKTEQFKKGNYKQALIDAFMEFDE----SLIKDEV 107
LF +D G + H +F+ +G + L AF +D + K+E+
Sbjct: 134 LFNAFDADGNGAI------HFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEM 187
Query: 108 MAILKTLKKENEVM 121
+AI+K++
Sbjct: 188 LAIMKSIYDMMGRH 201
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH,
niaid, SBRI, UW, emerald biostructures, ehrlich
chaffeensis; 1.90A {Ehrlichia chaffeensis}
Length = 231
Score = 26.5 bits (59), Expect = 3.0
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 70 QHLPEFIKKTEQFKKGNYKQALIDAFMEFDESLIKDEVMAILKTLKKENEVMAIL 124
+ E E ++ + D ++ D + +L TLK+ N MAI+
Sbjct: 80 KRWKEATILYENS---------LEKSQKSDNFMLNDGAIELLDTLKENNITMAIV 125
>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold,
peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium
falciparum} SCOP: c.47.1.10
Length = 182
Score = 26.2 bits (58), Expect = 3.2
Identities = 3/17 (17%), Positives = 11/17 (64%)
Query: 68 TSQHLPEFIKKTEQFKK 84
+++ +P + ++ + F K
Sbjct: 60 STKMIPGYEEEYDYFIK 76
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A
{Human herpesvirus 1} PDB: 1dml_B*
Length = 1193
Score = 26.3 bits (57), Expect = 3.8
Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 61 GSEVAVYTSQHLPEFIKKTEQFKKGNYKQALIDAFMEFDESLI---KDEVMAILKTLKKE 117
G E+ + T +++ EQ + A + A + +I D + + + L
Sbjct: 799 GREMLLATREYVHARWAAFEQLLADFPEAADMRAPGPYSMRIIYGDTDSIFVLCRGLTAA 858
Query: 118 NEVMAILKTLKKEITVSYFTKK 139
+ A+ + I+ + F
Sbjct: 859 -GLTAMGDKMASHISRALFLPP 879
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd;
deoxyguanosinetriphosphate triphsphohydrolase,
pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas
syringae PV}
Length = 451
Score = 26.2 bits (58), Expect = 4.0
Identities = 4/42 (9%), Positives = 11/42 (26%), Gaps = 8/42 (19%)
Query: 75 FIKKTEQFKKGNYKQALIDAFMEFDESLIKDEVMAILKTLKK 116
F+++ + G L++ + K
Sbjct: 314 FVEQQDALLAGTLPGDLVEHM--------HGPAKRCVLNAKD 347
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 26.0 bits (57), Expect = 4.3
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 74 EFIKKTEQFKKGNYKQALIDAFMEFDE----SLIKDEVMAILKTLKKENEVM 121
+FIK +G ++ L AF +D + K+E++ I+K +
Sbjct: 123 DFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKC 174
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB
domain, EGF like domain., hydrolase, sugar binding
protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP:
b.23.1.1 b.23.1.1 g.3.11.1
Length = 286
Score = 25.7 bits (56), Expect = 5.2
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 20/68 (29%)
Query: 21 NLTCGASSMQGWRIYQEDAHNVIIDFDENKSL------------FAVYDGHGGSEVAVYT 68
+C + I E+ ++ +DF E+ + + E +
Sbjct: 189 LSSCA------YNIRLEEGFSITLDFVESFDVEMHPEAQCPYDSLKIQT--DKREYGPFC 240
Query: 69 SQHLPEFI 76
+ LP I
Sbjct: 241 GKTLPPRI 248
>3g85_A Transcriptional regulator (LACI family); transcription regulator,
PSI-II, structural genomics structure initiative; 1.84A
{Clostridium acetobutylicum atcc 824}
Length = 289
Score = 25.6 bits (57), Expect = 5.5
Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 18/61 (29%)
Query: 87 YKQALIDAFMEFDESLIKD---------EVMAILKTLKKE-------NEVMAI--LKTLK 128
+ + ++ E+ I + L LK ++ +A+ + L
Sbjct: 149 FIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALFCNSDSIALGVISVLN 208
Query: 129 K 129
K
Sbjct: 209 K 209
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET:
SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A
1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Length = 289
Score = 25.5 bits (57), Expect = 5.5
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 87 YKQALIDAFMEFDESLI 103
YK+AL +A + F+E +
Sbjct: 156 YKRALEEANLPFNEQFV 172
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional
regulator, transcription regulator; 2.50A {Bacillus
megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A
1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Length = 332
Score = 25.5 bits (57), Expect = 6.3
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 87 YKQALIDAFMEFDESLI 103
YK+AL ++ + +S I
Sbjct: 200 YKRALTESGLPVRDSYI 216
>3tb6_A Arabinose metabolism transcriptional repressor; transcription
regulation, arabinose binding, DNA binding Pro; HET:
ARB; 2.21A {Bacillus subtilis}
Length = 298
Score = 25.6 bits (57), Expect = 7.2
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 22/65 (33%)
Query: 87 YKQALIDAFMEFDESLIK------------DEVMAILKTLKKE--------NEVMAI--L 124
+ QA + + +I ++V A L+ K N+ +A+ +
Sbjct: 158 FIQAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILCYNDEIALKVI 217
Query: 125 KTLKK 129
L++
Sbjct: 218 DMLRE 222
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator,
helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Length = 332
Score = 25.2 bits (56), Expect = 7.9
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 19/77 (24%)
Query: 42 VIID-FDENKSLFAVY-DGHGGSEVAVYTSQHL-------------PEFIKKTEQFKKGN 86
V++ D +K + +V D H + + + L + + G
Sbjct: 146 VLVGTIDGDKEIPSVNIDYHLAAYQST---KKLIDSGNKKIAYIMGSLKDVENTERMVG- 201
Query: 87 YKQALIDAFMEFDESLI 103
Y++AL++A +EFDE+L+
Sbjct: 202 YQEALLEANIEFDENLV 218
>1dhk_B Bean lectin-like inhibitor, porcine pancreatic alpha-amylase; CO
(hydrolase-inhibitor), complex (hydrolase-inhibitor)
comple; HET: NAG; 1.85A {Phaseolus vulgaris} SCOP:
b.29.1.1 PDB: 1viw_B*
Length = 223
Score = 25.1 bits (54), Expect = 8.1
Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 16 NHEGS--NLTCGASSMQGWRIYQEDAHNVIIDFDENKSLFAVY 56
+ N S Y V I ++ + +F+V
Sbjct: 107 SRISIDVNNNDIKSVPWDVHDYDGQNAEVRITYNSSTKVFSVS 149
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural
genomics, protein structure initiative; 2.08A
{Lactobacillus plantarum WCFS1}
Length = 290
Score = 25.2 bits (56), Expect = 8.7
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 87 YKQALIDAFMEFDESLI 103
YK+AL +A + ++ I
Sbjct: 147 YKKALKEANIAINQEWI 163
>3egc_A Putative ribose operon repressor; structural genomics, unknown
function, DNA-binding, transcri transcription
regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Length = 291
Score = 25.2 bits (56), Expect = 9.1
Identities = 3/17 (17%), Positives = 8/17 (47%)
Query: 87 YKQALIDAFMEFDESLI 103
++ A+ A + + I
Sbjct: 147 FRAAMSAAGLPVRQEWI 163
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.362
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,066,168
Number of extensions: 115216
Number of successful extensions: 365
Number of sequences better than 10.0: 1
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 103
Length of query: 139
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,356,429
Effective search space: 239603595
Effective search space used: 239603595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (23.7 bits)