RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7331
(139 letters)
>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase
2C, catalytic domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 295
Score = 110 bits (274), Expect = 6e-31
Identities = 44/109 (40%), Positives = 59/109 (54%), Gaps = 10/109 (9%)
Query: 2 GAYLSQPITKKESTNHEGSNLTCGASSMQGWRIYQEDAHNVIIDF---DENKSLFAVYDG 58
GA+L +P +K + +G+ L G SSMQGWR+ EDAH +I E+ S FAVYDG
Sbjct: 1 GAFLDKPKMEKHNAQGQGNGLRYGLSSMQGWRVEMEDAHTAVIGLPSGLESWSFFAVYDG 60
Query: 59 HGGSEVAVYTSQHLPEFIKKTEQFKKGN-------YKQALIDAFMEFDE 100
H GS+VA Y +HL + I + FK K + F+E DE
Sbjct: 61 HAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDE 109
>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase
pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 235
Score = 54.1 bits (129), Expect = 3e-10
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 22 LTCGASSMQGW-RIYQEDAHNVIIDFDENKSLFAVYDGHGGSEVAVYTSQHLPEFIKKTE 80
L A S +G R ED+ L A+ DG GG SQ + + +
Sbjct: 3 LRYAARSDRGLVRANNEDSVYA------GARLLALADGMGGHAAGEVASQLVIAALAHLD 56
Query: 81 QFKKGNYKQALIDAFMEFDESLIKDEVM 108
+ G A +DA + S I +V
Sbjct: 57 DDEPGGDLLAKLDAAVRAGNSAIAAQVE 84
>g1qmo.1 b.29.1.1 (A:,E:) Legume lectin {Field bean (Dolichos
lablab), Fril [TaxId: 35936]}
Length = 230
Score = 26.6 bits (58), Expect = 0.98
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 6/68 (8%)
Query: 14 STNHEGSNLTCGASS-MQGWRIYQEDAHNVIIDFDENKSLFAVYDGHGGSE-----VAVY 67
+ H G ++ S W I ++ +V + GS+ +
Sbjct: 133 NYIHIGIDVNSIRSKVTAKWDWQNGKIATAHISYNSVSKRLSVTSYYAGSKPATLSYDIE 192
Query: 68 TSQHLPEF 75
LPE+
Sbjct: 193 LHTVLPEW 200
>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS
N-domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 77
Score = 24.7 bits (54), Expect = 1.9
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 106 EVMAILKTLKK----ENEVMAILKTLKKEITVSY 135
EV+ +K L+K + V+ IL L KE +
Sbjct: 5 EVLVHVKNLEKNKSNDAAVLEILHVLDKEFVPTE 38
>d2hq2a1 e.62.1.1 (A:1-337) Heme oxygenase ChuS {Escherichia coli
O157:H7 [TaxId: 83334]}
Length = 337
Score = 25.5 bits (56), Expect = 2.9
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 90 ALIDAFMEFDESLIKDEVMAILKTLKKENEVMAI 123
L A + D + ++ IL L+ E I
Sbjct: 32 ELAFARVTHDAWRMHGDIREILAALESVGETKCI 65
>d1f9ka_ b.29.1.1 (A:) Legume lectin {Winged bean (Psophocarpus
tetragonolobus), acidic lectin [TaxId: 3891]}
Length = 234
Score = 25.0 bits (54), Expect = 3.1
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 14 STNHEGSNLTCGASS-MQGWRIYQEDAHNVIIDFDENKSLFAVY 56
H G ++ SS +++ NV+I +D + V
Sbjct: 134 QVPHIGIDVNSIVSSKTLHFQLENGGVANVVIKYDSPTKILNVV 177
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 25.1 bits (53), Expect = 3.4
Identities = 11/61 (18%), Positives = 17/61 (27%)
Query: 6 SQPITKKESTNHEGSNLTCGASSMQGWRIYQEDAHNVIIDFDENKSLFAVYDGHGGSEVA 65
+ +E + T S +IY D + K + A H VA
Sbjct: 239 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVA 298
Query: 66 V 66
Sbjct: 299 F 299
>d1chka_ d.2.1.7 (A:) Endochitosanase {Streptomyces sp., strain N174
[TaxId: 1931]}
Length = 238
Score = 24.4 bits (53), Expect = 4.9
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 51 SLFAVYD---GHGGSEVAVYTSQHLPEFIKKTEQFKKGNYKQALIDAFMEFDESLIKDE 106
FA YD HG +KK +G + ++ F++ ++ + E
Sbjct: 139 GQFAYYDAIVMHGPGNDPTSFGGIRKTAMKKARTPAQGGDETTYLNGFLDARKAAMLTE 197
>d1e7ua4 d.144.1.4 (A:726-1094) Phoshoinositide 3-kinase (PI3K),
catalytic domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 369
Score = 24.3 bits (52), Expect = 7.6
Identities = 5/23 (21%), Positives = 14/23 (60%)
Query: 109 AILKTLKKENEVMAILKTLKKEI 131
A+L ++ +V+ +L+ + +I
Sbjct: 2 AMLHDFTQQVQVIDMLQKVTIDI 24
>d1qnwa_ b.29.1.1 (A:) Legume lectin {Furze (Ulex europaeus), UEA-II
[TaxId: 3902]}
Length = 237
Score = 23.9 bits (51), Expect = 7.8
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 14 STNHEGSNLTCGAS-SMQGWRIYQEDAHNVIIDFDENKSLFAVY 56
H G ++ S W + +V+I + V
Sbjct: 139 DFKHIGIDVNSIKSIKTVKWDWRNGEVADVVITYRAPTKSLTVC 182
>d1r6ra_ a.190.1.1 (A:) Flavivirus capsid protein C {Dengue virus
type 2 [TaxId: 11060]}
Length = 80
Score = 22.8 bits (49), Expect = 8.6
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 94 AFMEFDESLIKDEVMAILKTLKKENEVMAILKTLKKEIT 132
AF+ F ++ T+KK ++ + +L+ +KEI
Sbjct: 32 AFLRFLTIPPTAGILKRWGTIKK-SKAINVLRGFRKEIG 69
>d3dbya1 a.29.13.1 (A:5-125) Uncharacterized protein BCE_G9241_0798
{Bacillus cereus [TaxId: 1396]}
Length = 121
Score = 23.2 bits (50), Expect = 9.4
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 12/59 (20%)
Query: 74 EFIKKTEQFKKGNYKQALIDAFMEFDESLIKDEVMAILKTLKKENEVMAILKTLKKEIT 132
E IKK F + F L K + ++ K+ + ++ K I
Sbjct: 34 EDIKKATYFVE------------TFTNLLNKVRNVNLMAFSKEAEQAAKEIRAFKLNII 80
>d2d3sa1 b.29.1.1 (A:1-237) Legume lectin {Winged bean (Psophocarpus
tetragonolobus), basic agglutinin [TaxId: 3891]}
Length = 237
Score = 23.5 bits (50), Expect = 9.7
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 14 STNHEGSNLTCGASS-MQGWRIYQEDAHNVIIDFDENKSLFAVY 56
H G ++ S+ + + NV+I +D + + V
Sbjct: 133 QIPHIGIDVNSVISTKTVPFTLDNGGIANVVIKYDASTKILHVV 176
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.130 0.362
Gapped
Lambda K H
0.267 0.0514 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 503,901
Number of extensions: 22385
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 21
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (22.8 bits)