BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7332
         (71 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I0O|A Chain A, Crystal Structure Of Anopheles Gambiae SerTHR
          PHOSPHATASE COMPLEXED With Zn2+
          Length = 304

 Score = 52.4 bits (124), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 29/39 (74%)

Query: 1  MGAYLSQPITKKESTNHEGSNLTCGASSMQGWRIYQEGA 39
          +GAYLS+P+T K+S++     L  G+SSMQGWRI QE A
Sbjct: 2  LGAYLSEPLTTKDSSDESNEFLASGSSSMQGWRISQEDA 40


>pdb|3FXJ|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a
          (Ppm1a) Bound With Phosphate At 3 Mm Of Mn2+
 pdb|3FXK|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a
          (Ppm1a) Bound With Phosphate At 10 Mm Of Mn2+
 pdb|3FXL|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a
          (Ppm1a) Bound With Citrate At 1 Mm Of Mn2+
 pdb|3FXM|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a
          (Ppm1a) Bound With Citrate At 10 Mm Of Mn2+
 pdb|3FXO|A Chain A, Crystal Structure Of Human Protein Phosphatase 1a
          (Ppm1a) Bound With Phosphate At 1 Mm Of Mn2+
          Length = 390

 Score = 42.4 bits (98), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 1  MGAYLSQPITKKESTNHEGSNLTCGASSMQGWRIYQEGA 39
          MGA+L +P  +K +   +G+ L  G SSMQGWR+  E A
Sbjct: 1  MGAFLDKPKMEKHNAQGQGNGLRYGLSSMQGWRVEMEDA 39


>pdb|1A6Q|A Chain A, Crystal Structure Of The Protein SerineTHREONINE
          PHOSPHATASE 2C AT 2 A Resolution
          Length = 382

 Score = 42.4 bits (98), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 1  MGAYLSQPITKKESTNHEGSNLTCGASSMQGWRIYQEGA 39
          MGA+L +P  +K +   +G+ L  G SSMQGWR+  E A
Sbjct: 1  MGAFLDKPKMEKHNAQGQGNGLRYGLSSMQGWRVEMEDA 39


>pdb|2P8E|A Chain A, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
          Domain Of Human Ppm1b
 pdb|2P8E|B Chain B, Crystal Structure Of The SerineTHREONINE PHOSPHATASE
          Domain Of Human Ppm1b
          Length = 307

 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 1  MGAYLSQPITKKESTNHEGSNLTCGASSMQGWRIYQEGA 39
          +GA+L +P T+K + +  G+ L  G SSMQGWR+  E A
Sbjct: 3  LGAFLDKPKTEKHNAHGAGNGLRYGLSSMQGWRVEMEDA 41


>pdb|2UXT|A Chain A, Sufi Protein From Escherichia Coli
 pdb|2UXT|B Chain B, Sufi Protein From Escherichia Coli
 pdb|2UXV|A Chain A, Sufi Protein From Escherichia Coli
 pdb|2UXV|B Chain B, Sufi Protein From Escherichia Coli
          Length = 451

 Score = 26.6 bits (57), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 13  ESTNHEGSNLTCGASSMQGWRIYQEGAAVPCSVLFSNFIVILSPPGLL 60
           + +N +  ++TCG ++    RI   G   P S+L S  ++ L P GLL
Sbjct: 257 DMSNGDEVSITCGEAASIVDRI--RGFFEPSSILVSTLVLTLRPTGLL 302


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.454 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,076,934
Number of Sequences: 62578
Number of extensions: 61132
Number of successful extensions: 99
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 94
Number of HSP's gapped (non-prelim): 6
length of query: 71
length of database: 14,973,337
effective HSP length: 41
effective length of query: 30
effective length of database: 12,407,639
effective search space: 372229170
effective search space used: 372229170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)