Query psy7332
Match_columns 71
No_of_seqs 118 out of 473
Neff 5.2
Searched_HMMs 46136
Date Sat Aug 17 00:05:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7332.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7332hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0697|consensus 99.9 1.6E-28 3.6E-33 182.4 3.5 63 1-69 1-63 (379)
2 KOG0699|consensus 99.9 5.9E-26 1.3E-30 173.6 2.3 60 1-69 1-60 (542)
3 PTZ00224 protein phosphatase 2 99.6 8.3E-16 1.8E-20 115.7 5.2 58 1-69 1-58 (381)
4 KOG0698|consensus 99.0 4.3E-10 9.3E-15 82.6 4.6 46 22-69 40-85 (330)
5 PF00481 PP2C: Protein phospha 98.9 5.4E-10 1.2E-14 77.8 2.4 43 23-69 1-43 (254)
6 PLN03145 Protein phosphatase 2 98.9 2.9E-09 6.4E-14 79.9 4.7 49 21-69 64-113 (365)
7 COG0631 PTC1 Serine/threonine 97.7 3.6E-05 7.8E-10 55.1 3.5 41 20-68 7-47 (262)
8 cd00143 PP2Cc Serine/threonine 97.7 5.4E-05 1.2E-09 50.8 3.7 39 23-69 2-40 (254)
9 smart00332 PP2Cc Serine/threon 97.6 0.00011 2.5E-09 49.7 4.7 40 20-68 4-43 (255)
10 PRK14559 putative protein seri 96.5 0.0032 6.8E-08 51.0 3.7 49 21-69 374-424 (645)
11 KOG0700|consensus 93.6 0.059 1.3E-06 41.8 2.6 14 56-69 96-109 (390)
12 PF13672 PP2C_2: Protein phosp 54.1 13 0.00027 24.6 2.3 31 28-69 4-34 (212)
13 KOG2971|consensus 42.8 11 0.00024 28.4 0.7 14 58-71 194-207 (299)
14 smart00331 PP2C_SIG Sigma fact 41.9 31 0.00067 22.4 2.7 15 56-70 27-41 (193)
15 smart00207 TNF Tumour necrosis 32.2 40 0.00087 21.3 2.0 10 56-65 114-123 (125)
16 COG3130 Rmf Ribosome modulatio 31.4 13 0.00027 21.6 -0.4 12 29-40 41-52 (55)
17 cd00184 TNF Tumor Necrosis Fac 31.3 35 0.00076 21.8 1.6 10 56-65 128-137 (137)
18 PF13292 DXP_synthase_N: 1-deo 28.8 43 0.00094 25.0 1.9 12 58-69 235-246 (270)
19 PRK14563 ribosome modulation f 28.7 12 0.00026 21.8 -0.8 11 29-39 41-51 (55)
20 KOG4028|consensus 25.3 38 0.00081 23.5 1.0 14 21-34 62-75 (175)
21 KOG1323|consensus 24.6 44 0.00095 26.6 1.3 12 58-69 143-154 (493)
22 PF07075 DUF1343: Protein of u 22.3 48 0.001 25.5 1.2 16 21-36 170-185 (365)
No 1
>KOG0697|consensus
Probab=99.95 E-value=1.6e-28 Score=182.41 Aligned_cols=63 Identities=38% Similarity=0.561 Sum_probs=60.2
Q ss_pred CCCCCCCCceeEeeeeecCCcceEeeeccccccccccCeeeeEeccCccceeeeCCCCceEEEEEeCcc
Q psy7332 1 MGAYLSQPITKKESTNHEGSNLTCGASSMQGWRIYQEGAAVPCSVLFSNFIVILSPPGLLLFLKYWGMI 69 (71)
Q Consensus 1 MG~~Ls~P~t~K~~~~g~~~~~~yg~ssmQGwR~~MEDaH~~~~dl~~~~~~~~~~~~~~~fgVfDGH~ 69 (71)
||+||.||+|+|+...|++++++||+|||||||..|||||++.+-|++. .++|+||||||||.
T Consensus 1 MGaFLdKPkteKhn~~G~GNglryg~SSMQGWR~eMEDah~A~~~l~~~------l~dWSfFAVfDGHA 63 (379)
T KOG0697|consen 1 MGAFLDKPKTEKHNAEGEGNGLRYGVSSMQGWRVEMEDAHTAVAGLPSP------LEDWSFFAVFDGHA 63 (379)
T ss_pred CCccccCcccccccccCcCCceeeeeccccchhhhhhhhhhhhhcCCCC------ccCceEEEEEcCcc
Confidence 9999999999999999999999999999999999999999999999854 48999999999995
No 2
>KOG0699|consensus
Probab=99.91 E-value=5.9e-26 Score=173.57 Aligned_cols=60 Identities=47% Similarity=0.608 Sum_probs=58.1
Q ss_pred CCCCCCCCceeEeeeeecCCcceEeeeccccccccccCeeeeEeccCccceeeeCCCCceEEEEEeCcc
Q psy7332 1 MGAYLSQPITKKESTNHEGSNLTCGASSMQGWRIYQEGAAVPCSVLFSNFIVILSPPGLLLFLKYWGMI 69 (71)
Q Consensus 1 MG~~Ls~P~t~K~~~~g~~~~~~yg~ssmQGwR~~MEDaH~~~~dl~~~~~~~~~~~~~~~fgVfDGH~ 69 (71)
||+|||+|+|+|.++.|.++.|.||+++|||||.+|||||.|+++|+ .+++||||||||-
T Consensus 1 MGAYLs~P~t~K~s~dg~g~lL~yg~s~MQGWRvsqEDAHNci~~ld---------~~t~mF~VYDGHG 60 (542)
T KOG0699|consen 1 MGAYLSKPITEKESEDGSGNLLSYGCSTMQGWRVSQEDAHNCIVDLD---------TDTHMFGVYDGHG 60 (542)
T ss_pred CcccccCCccccccccccCccchhchhhhhccccchhhhhccccccc---------CcceEEEEecCCC
Confidence 99999999999999999999999999999999999999999999998 6799999999993
No 3
>PTZ00224 protein phosphatase 2C; Provisional
Probab=99.60 E-value=8.3e-16 Score=115.71 Aligned_cols=58 Identities=22% Similarity=0.341 Sum_probs=52.8
Q ss_pred CCCCCCCCceeEeeeeecCCcceEeeeccccccccccCeeeeEeccCccceeeeCCCCceEEEEEeCcc
Q psy7332 1 MGAYLSQPITKKESTNHEGSNLTCGASSMQGWRIYQEGAAVPCSVLFSNFIVILSPPGLLLFLKYWGMI 69 (71)
Q Consensus 1 MG~~Ls~P~t~K~~~~g~~~~~~yg~ssmQGwR~~MEDaH~~~~dl~~~~~~~~~~~~~~~fgVfDGH~ 69 (71)
||..|++|+++|.++.+++..+++|.+|++|+|.+|||+|.+..+ +...||||||||-
T Consensus 1 mg~~l~~p~~~~~~~~~~~~~~~~g~~s~~G~R~~nED~~~v~~~-----------~~~~lfgVfDGHg 58 (381)
T PTZ00224 1 MGIMLPKPVLSKLVDRAGNSIFRCASACVNGYRESMEDAHLLYLT-----------DDWGFFGVFDGHV 58 (381)
T ss_pred CCccCCCCccccccccCCCccEEEEEEeCCCCCCCCCCeeEeccC-----------CCceEEEEEeCCC
Confidence 999999999999999999999999999999999999999987543 3467999999984
No 4
>KOG0698|consensus
Probab=99.00 E-value=4.3e-10 Score=82.58 Aligned_cols=46 Identities=15% Similarity=0.029 Sum_probs=34.9
Q ss_pred ceEeeeccccccccccCeeeeEeccCccceeeeCCCCceEEEEEeCcc
Q psy7332 22 LTCGASSMQGWRIYQEGAAVPCSVLFSNFIVILSPPGLLLFLKYWGMI 69 (71)
Q Consensus 22 ~~yg~ssmQGwR~~MEDaH~~~~dl~~~~~~~~~~~~~~~fgVfDGH~ 69 (71)
...+.+++||||..|||+|++..++.... ..+....+||||||||-
T Consensus 40 ~~~~~~~~~~~r~~med~~~~~~~~~~~~--~~~~~~~~ffgVfDGHG 85 (330)
T KOG0698|consen 40 RLGSLLSIRGRRRKMEDRHVQLPDFLEED--VGGEQDTAFFGVFDGHG 85 (330)
T ss_pred cceEEEecCCCCCccCcceeecccccccc--cCCCCceEEEEEEeCCC
Confidence 34566699999999999999999976311 11223689999999993
No 5
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=98.92 E-value=5.4e-10 Score=77.84 Aligned_cols=43 Identities=30% Similarity=0.205 Sum_probs=35.8
Q ss_pred eEeeeccccccccccCeeeeEeccCccceeeeCCCCceEEEEEeCcc
Q psy7332 23 TCGASSMQGWRIYQEGAAVPCSVLFSNFIVILSPPGLLLFLKYWGMI 69 (71)
Q Consensus 23 ~yg~ssmQGwR~~MEDaH~~~~dl~~~~~~~~~~~~~~~fgVfDGH~ 69 (71)
.||++++||||.+|||+|.+..++... ...+...+|||||||-
T Consensus 1 ~~~~~~~~g~r~~~eD~~~~~~~~~~~----~~~~~~~l~~V~DGhg 43 (254)
T PF00481_consen 1 DYGVSSMQGVRKEMEDRHLIIQNFNSN----SGNDNVSLFGVFDGHG 43 (254)
T ss_dssp EEEEEEEECTSSSHHEEEEEEEEETCC----TTEEEEEEEEEEEEES
T ss_pred CcCeecCCCCCCcccCEEEEecCcccc----CCCCCcEEEEEecCCC
Confidence 589999999999999999999987522 1235789999999995
No 6
>PLN03145 Protein phosphatase 2c; Provisional
Probab=98.86 E-value=2.9e-09 Score=79.90 Aligned_cols=49 Identities=16% Similarity=0.046 Sum_probs=36.0
Q ss_pred cceEeeeccccccccccCeeeeEeccCccceeee-CCCCceEEEEEeCcc
Q psy7332 21 NLTCGASSMQGWRIYQEGAAVPCSVLFSNFIVIL-SPPGLLLFLKYWGMI 69 (71)
Q Consensus 21 ~~~yg~ssmQGwR~~MEDaH~~~~dl~~~~~~~~-~~~~~~~fgVfDGH~ 69 (71)
-+++|..|.+|.|.+|||+|.+..++..++.+.. .....+||||||||-
T Consensus 64 ~~~~~~~s~~G~R~~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhG 113 (365)
T PLN03145 64 VVRSGAWADIGSRSSMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHG 113 (365)
T ss_pred ceEEEEEccccCCCCCCCceEecccccccccccccCCCCceEEEEEeCCC
Confidence 4689999999999999999988766543222211 123468999999993
No 7
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=97.71 E-value=3.6e-05 Score=55.07 Aligned_cols=41 Identities=29% Similarity=0.108 Sum_probs=33.9
Q ss_pred CcceEeeeccccccccccCeeeeEeccCccceeeeCCCCceEEEEEeCc
Q psy7332 20 SNLTCGASSMQGWRIYQEGAAVPCSVLFSNFIVILSPPGLLLFLKYWGM 68 (71)
Q Consensus 20 ~~~~yg~ssmQGwR~~MEDaH~~~~dl~~~~~~~~~~~~~~~fgVfDGH 68 (71)
....++.+.++++|.++||++.+..+-. .+. ..||+|||||
T Consensus 7 ~~~~~~~s~~g~~R~~NeD~~~~~~~~~-------~~~-~~l~~V~DG~ 47 (262)
T COG0631 7 SLKVAGLSDVGTVRKHNEDAFLIKPNEN-------GNL-LLLFAVADGM 47 (262)
T ss_pred eeeeeeeccCCCccCCCCcceeeccccC-------Ccc-eeEEEEEeCc
Confidence 3557889999999999999999988533 234 7899999998
No 8
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=97.67 E-value=5.4e-05 Score=50.82 Aligned_cols=39 Identities=28% Similarity=0.093 Sum_probs=31.5
Q ss_pred eEeeeccccccccccCeeeeEeccCccceeeeCCCCceEEEEEeCcc
Q psy7332 23 TCGASSMQGWRIYQEGAAVPCSVLFSNFIVILSPPGLLLFLKYWGMI 69 (71)
Q Consensus 23 ~yg~ssmQGwR~~MEDaH~~~~dl~~~~~~~~~~~~~~~fgVfDGH~ 69 (71)
.++.++++|+|..+||+..+..... ..+..+|+|+|||-
T Consensus 2 ~~~~~~~~g~r~~neD~~~~~~~~~--------~~~~~~~~V~DG~G 40 (254)
T cd00143 2 SAGVSDKGGDRKTNEDAVVIKPNLN--------NEDGGLFGVFDGHG 40 (254)
T ss_pred ceeeecCCCCCCCCcceEEEeccCC--------CCCcEEEEEEcCCC
Confidence 5789999999999999988865431 02578999999984
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=97.62 E-value=0.00011 Score=49.66 Aligned_cols=40 Identities=35% Similarity=0.230 Sum_probs=33.2
Q ss_pred CcceEeeeccccccccccCeeeeEeccCccceeeeCCCCceEEEEEeCc
Q psy7332 20 SNLTCGASSMQGWRIYQEGAAVPCSVLFSNFIVILSPPGLLLFLKYWGM 68 (71)
Q Consensus 20 ~~~~yg~ssmQGwR~~MEDaH~~~~dl~~~~~~~~~~~~~~~fgVfDGH 68 (71)
..+.++.+++||.|...||+..+..++. .+..+|+|+|||
T Consensus 4 ~~~~~~~~~~~~~r~~neD~~~~~~~~~---------~~~~~~~v~DG~ 43 (255)
T smart00332 4 LGLRYGLSSMQGVRKPMEDAHVITPDLS---------DSGAFFGVFDGH 43 (255)
T ss_pred CceeEEEecCCCCCCCCcceEEEeccCC---------CCeEEEEEEeCC
Confidence 4578888999999999999988766432 457899999998
No 10
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=96.48 E-value=0.0032 Score=50.98 Aligned_cols=49 Identities=14% Similarity=-0.138 Sum_probs=31.8
Q ss_pred cceEeeeccccc-cccccCeeeeEeccCccceeee-CCCCceEEEEEeCcc
Q psy7332 21 NLTCGASSMQGW-RIYQEGAAVPCSVLFSNFIVIL-SPPGLLLFLKYWGMI 69 (71)
Q Consensus 21 ~~~yg~ssmQGw-R~~MEDaH~~~~dl~~~~~~~~-~~~~~~~fgVfDGH~ 69 (71)
.++++..|-+|. |..+||++.+..++........ .....++|+|+|||-
T Consensus 374 ~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmG 424 (645)
T PRK14559 374 SLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMG 424 (645)
T ss_pred eEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCC
Confidence 477888899996 9999999877554321000000 012467999999983
No 11
>KOG0700|consensus
Probab=93.65 E-value=0.059 Score=41.78 Aligned_cols=14 Identities=29% Similarity=0.180 Sum_probs=12.4
Q ss_pred CCCceEEEEEeCcc
Q psy7332 56 PPGLLLFLKYWGMI 69 (71)
Q Consensus 56 ~~~~~~fgVfDGH~ 69 (71)
.+++-||||||||-
T Consensus 96 ~~~~~fvGIyDGhg 109 (390)
T KOG0700|consen 96 ENGWLFVGIYDGHG 109 (390)
T ss_pred cCCeEEEEEecCCC
Confidence 57899999999994
No 12
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=54.06 E-value=13 Score=24.62 Aligned_cols=31 Identities=16% Similarity=-0.183 Sum_probs=18.9
Q ss_pred ccccccccccCeeeeEeccCccceeeeCCCCceEEEEEeCcc
Q psy7332 28 SMQGWRIYQEGAAVPCSVLFSNFIVILSPPGLLLFLKYWGMI 69 (71)
Q Consensus 28 smQGwR~~MEDaH~~~~dl~~~~~~~~~~~~~~~fgVfDGH~ 69 (71)
|-+|-|..=||++..... ++..+++|-||+-
T Consensus 4 sh~~~~~~nqD~~~~~~~-----------~~~~~~aVaDG~g 34 (212)
T PF13672_consen 4 SHRGRGAPNQDAFGIRTD-----------DDGNLAAVADGVG 34 (212)
T ss_dssp ---TTSSS--EEEEEE-T-----------CCTCEEEEEEEES
T ss_pred cccCCCCCCCCCEEeeeC-----------CCCEEEEEEECCC
Confidence 456788888999884433 4457889999974
No 13
>KOG2971|consensus
Probab=42.78 E-value=11 Score=28.44 Aligned_cols=14 Identities=36% Similarity=0.693 Sum_probs=11.9
Q ss_pred CceEEEEEeCcccC
Q psy7332 58 GLLLFLKYWGMIWF 71 (71)
Q Consensus 58 ~~~~fgVfDGH~~~ 71 (71)
.+--|.+-||||||
T Consensus 194 hvf~Fsi~D~~IWf 207 (299)
T KOG2971|consen 194 HVFTFSILDGKIWF 207 (299)
T ss_pred eEEEEEEecCeEEE
Confidence 46679999999997
No 14
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=41.92 E-value=31 Score=22.35 Aligned_cols=15 Identities=33% Similarity=0.065 Sum_probs=12.1
Q ss_pred CCCceEEEEEeCccc
Q psy7332 56 PPGLLLFLKYWGMIW 70 (71)
Q Consensus 56 ~~~~~~fgVfDGH~~ 70 (71)
+++..+|+|+|||-|
T Consensus 27 ~~~~~~~~v~Dg~G~ 41 (193)
T smart00331 27 PEGRLLIAIADVMGK 41 (193)
T ss_pred CCCeEEEEEEecCCC
Confidence 455789999999865
No 15
>smart00207 TNF Tumour necrosis factor family. Family of cytokines that form homotrimeric or heterotrimeric complexes. TNF mediates mature T-cell receptor-induced apoptosis through the p75 TNF receptor.
Probab=32.18 E-value=40 Score=21.25 Aligned_cols=10 Identities=30% Similarity=0.710 Sum_probs=8.2
Q ss_pred CCCceEEEEE
Q psy7332 56 PPGLLLFLKY 65 (71)
Q Consensus 56 ~~~~~~fgVf 65 (71)
+++..|||+|
T Consensus 114 ~~~~TfFG~f 123 (125)
T smart00207 114 APGATFFGAF 123 (125)
T ss_pred CCCcEEEEEE
Confidence 3578999998
No 16
>COG3130 Rmf Ribosome modulation factor [Translation, ribosomal structure and biogenesis]
Probab=31.40 E-value=13 Score=21.61 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=9.9
Q ss_pred cccccccccCee
Q psy7332 29 MQGWRIYQEGAA 40 (71)
Q Consensus 29 mQGwR~~MEDaH 40 (71)
.-|||.-|+|.-
T Consensus 41 LgGWRea~~D~~ 52 (55)
T COG3130 41 LGGWREAMADRV 52 (55)
T ss_pred HHHHHHHhhhcc
Confidence 569999999963
No 17
>cd00184 TNF Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal domain, a short transmembrane segment, an extracellular stalk, and a globular TNF-like extracellular domain of about 150 residues. They initiate apoptosis by binding to related receptors, some of which have intracellular death domains. They generally form homo- or hetero- trimeric complexes.TNF cytokines bind one elongated receptor molecule along each of three clefts formed by neighboring monomers of the trimer with ligand trimerization a requiste for receptor binding.
Probab=31.33 E-value=35 Score=21.77 Aligned_cols=10 Identities=20% Similarity=0.451 Sum_probs=8.1
Q ss_pred CCCceEEEEE
Q psy7332 56 PPGLLLFLKY 65 (71)
Q Consensus 56 ~~~~~~fgVf 65 (71)
.++..|||+|
T Consensus 128 ~~~~TfFG~f 137 (137)
T cd00184 128 SQGTTFFGAF 137 (137)
T ss_pred CCCcEEEEeC
Confidence 3578999997
No 18
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=28.84 E-value=43 Score=24.99 Aligned_cols=12 Identities=17% Similarity=-0.103 Sum_probs=9.5
Q ss_pred CceEEEEEeCcc
Q psy7332 58 GLLLFLKYWGMI 69 (71)
Q Consensus 58 ~~~~fgVfDGH~ 69 (71)
++.|+|.+|||-
T Consensus 235 G~~Y~GPiDGHd 246 (270)
T PF13292_consen 235 GFDYIGPIDGHD 246 (270)
T ss_dssp T-EEEEEEETT-
T ss_pred CCeEEeccCCCC
Confidence 688999999993
No 19
>PRK14563 ribosome modulation factor; Provisional
Probab=28.66 E-value=12 Score=21.76 Aligned_cols=11 Identities=36% Similarity=0.743 Sum_probs=9.5
Q ss_pred cccccccccCe
Q psy7332 29 MQGWRIYQEGA 39 (71)
Q Consensus 29 mQGwR~~MEDa 39 (71)
+.|||.-+||.
T Consensus 41 l~GWReg~~d~ 51 (55)
T PRK14563 41 LGGWREAMEDR 51 (55)
T ss_pred HHHHHHHHhhh
Confidence 67999999985
No 20
>KOG4028|consensus
Probab=25.30 E-value=38 Score=23.51 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=12.1
Q ss_pred cceEeeeccccccc
Q psy7332 21 NLTCGASSMQGWRI 34 (71)
Q Consensus 21 ~~~yg~ssmQGwR~ 34 (71)
.+.++.+++|||-+
T Consensus 62 dlh~at~~iqgwpr 75 (175)
T KOG4028|consen 62 DLHFATKGIQGWPR 75 (175)
T ss_pred eeeeecccccCCce
Confidence 67899999999964
No 21
>KOG1323|consensus
Probab=24.63 E-value=44 Score=26.57 Aligned_cols=12 Identities=25% Similarity=0.160 Sum_probs=10.6
Q ss_pred CceEEEEEeCcc
Q psy7332 58 GLLLFLKYWGMI 69 (71)
Q Consensus 58 ~~~~fgVfDGH~ 69 (71)
+.++|..||||.
T Consensus 143 ~~~~~slfdgha 154 (493)
T KOG1323|consen 143 DGALFSLFDGHA 154 (493)
T ss_pred cceeeeeecCCC
Confidence 579999999995
No 22
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.31 E-value=48 Score=25.46 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=13.8
Q ss_pred cceEeeeccccccccc
Q psy7332 21 NLTCGASSMQGWRIYQ 36 (71)
Q Consensus 21 ~~~yg~ssmQGwR~~M 36 (71)
....-+-.|+|||++|
T Consensus 170 ~~~L~VI~m~gw~R~m 185 (365)
T PF07075_consen 170 KCDLTVIPMEGWRRSM 185 (365)
T ss_pred CCceEEEeCCCCCCCC
Confidence 3677889999999998
Done!