RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7332
         (71 letters)



>gnl|CDD|240318 PTZ00224, PTZ00224, protein phosphatase 2C; Provisional.
          Length = 381

 Score = 27.4 bits (61), Expect = 0.59
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 1  MGAYLSQPITKKESTNHEGSNLTCGASSMQGWRIYQEGAAV 41
          MG  L +P+  K       S   C ++ + G+R   E A +
Sbjct: 1  MGIMLPKPVLSKLVDRAGNSIFRCASACVNGYRESMEDAHL 41


>gnl|CDD|133918 PHA00660, PHA00660, hypothetical protein.
          Length = 215

 Score = 26.4 bits (57), Expect = 1.3
 Identities = 15/52 (28%), Positives = 25/52 (48%)

Query: 7   QPITKKESTNHEGSNLTCGASSMQGWRIYQEGAAVPCSVLFSNFIVILSPPG 58
           Q +  +     +G NL  GA SM+   + + G+A   S + + F  +LS  G
Sbjct: 150 QALNTRTQAKVQGINLRTGAGSMEADALLKSGSAAGISPVGAGFSSLLSGAG 201


>gnl|CDD|240345 PTZ00287, PTZ00287, 6-phosphofructokinase; Provisional.
          Length = 1419

 Score = 26.2 bits (57), Expect = 1.8
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 25   GASSMQGWRIYQEGAAVPCSV--LFSNFIVILSPPGLLLFLKY 65
            GA+    WR+ Q+ A V C+   L  N+  +L P  LL+ L +
Sbjct: 1040 GAADKTLWRVVQDIADVVCARAELGKNYGTVLIPDALLMHLPH 1082


>gnl|CDD|189541 pfam00426, VP4_haemagglut, Outer Capsid protein VP4
           (Hemagglutinin). 
          Length = 776

 Score = 25.9 bits (57), Expect = 2.0
 Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 21  NLTCGASSMQGWRIYQEGAAVPCSVLFSNFIVILSPPGLLLFLKYWGMIW 70
            +T   +S   W+ +           +SN+  +LS   L   +K  G ++
Sbjct: 127 QITVSNTSDTKWKFFDLIKTTL-DGKYSNYSTLLSGMKLYGTMKNGGRLY 175


>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C,
          catalytic domain.  The protein architecture and deduced
          catalytic mechanism of PP2C phosphatases are similar to
          the PP1, PP2A, PP2B family of protein Ser/Thr
          phosphatases, with which PP2C shares no sequence
          similarity.
          Length = 252

 Score = 25.4 bits (56), Expect = 2.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 14 STNHEGSNLTCGASSMQGWRIYQE 37
          S + +   L  G SSMQG R   E
Sbjct: 1  SVSGKNLGLRYGLSSMQGVRKPME 24


>gnl|CDD|216104 pfam00759, Glyco_hydro_9, Glycosyl hydrolase family 9. 
          Length = 437

 Score = 24.9 bits (55), Expect = 3.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)

Query: 43  CSVLFSNFIVILSPPGLLLFLKYWG 67
           C  L   +  +   PG LL+L  WG
Sbjct: 290 CYWLPGGYGQVQYTPGGLLYLYQWG 314


>gnl|CDD|216741 pfam01853, MOZ_SAS, MOZ/SAS family.  This region of these proteins
           has been suggested to be homologous to
           acetyltransferases.
          Length = 189

 Score = 24.5 bits (54), Expect = 5.4
 Identities = 7/16 (43%), Positives = 8/16 (50%)

Query: 54  LSPPGLLLFLKYWGMI 69
           LS  GLL +  YW   
Sbjct: 122 LSDLGLLSYRSYWSQT 137


>gnl|CDD|227360 COG5027, SAS2, Histone acetyltransferase (MYST family) [Chromatin
           structure and dynamics].
          Length = 395

 Score = 24.3 bits (53), Expect = 5.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 54  LSPPGLLLFLKYWGMI 69
           LS  GLL +  YW  I
Sbjct: 304 LSDLGLLSYRAYWSEI 319


>gnl|CDD|227317 COG4984, COG4984, Predicted membrane protein [Function unknown].
          Length = 644

 Score = 24.4 bits (53), Expect = 6.7
 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 33  RIYQEGAAVPCSVLFSNFIVILSPPGLLLFLKYWGMIW 70
           + YQ GA      LF  + + L P  LLLF     +  
Sbjct: 91  QTYQTGADP--WELFRIWAICLIPF-LLLFPGNVALAL 125


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.137    0.454 

Gapped
Lambda     K      H
   0.267   0.0697    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,435,441
Number of extensions: 242022
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 14
Length of query: 71
Length of database: 10,937,602
Length adjustment: 41
Effective length of query: 30
Effective length of database: 9,119,088
Effective search space: 273572640
Effective search space used: 273572640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.3 bits)