RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7332
(71 letters)
>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI,
protei structure initiative, NEW YORK SGX research
center for STRU genomics; 1.70A {Anopheles gambiae}
Length = 304
Score = 66.6 bits (163), Expect = 3e-15
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 1 MGAYLSQPITKKESTNHEGSNLTCGASSMQGWRIYQE 37
+GAYLS+P+T K+S++ L G+SSMQGWRI QE
Sbjct: 2 LGAYLSEPLTTKDSSDESNEFLASGSSSMQGWRISQE 38
>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin,
hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1
d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A
Length = 382
Score = 63.7 bits (155), Expect = 4e-14
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 1 MGAYLSQPITKKESTNHEGSNLTCGASSMQGWRIYQE 37
MGA+L +P +K + +G+ L G SSMQGWR+ E
Sbjct: 1 MGAFLDKPKMEKHNAQGQGNGLRYGLSSMQGWRVEME 37
>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase,
PSI-2, protein structure initiative; 1.82A {Homo
sapiens}
Length = 307
Score = 62.8 bits (153), Expect = 8e-14
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 1 MGAYLSQPITKKESTNHEGSNLTCGASSMQGWRIYQE 37
+GA+L +P T+K + + G+ L G SSMQGWR+ E
Sbjct: 3 LGAFLDKPKTEKHNAHGAGNGLRYGLSSMQGWRVEME 39
>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium,
sulfate structural genomics, PSI-2, protein structure
initiative; 1.90A {Toxoplasma gondii}
Length = 364
Score = 45.4 bits (107), Expect = 1e-07
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 10 TKKESTNHEGSNLTCGASSMQGWRIYQE 37
+ K+ T A++M G R E
Sbjct: 1 SLKKVITVNEWYTTTVAATMLGRRPTDE 28
>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting
protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding
protein, protein binding; 2.25A {Homo sapiens} PDB:
2pom_A 2pop_A
Length = 401
Score = 42.3 bits (99), Expect = 2e-06
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 1 MGAYLSQPITKKESTNHEGSNLTCGASSMQGWRIYQEGAA 40
+ QP + S + G++S + + +G
Sbjct: 8 LLQSEQQPSWTDDLPLCHLSGV--GSASNRSYSADGKGTE 45
>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural
genomics, protein structure initiative; 2.04A
{Toxoplasma gondii}
Length = 324
Score = 38.9 bits (91), Expect = 3e-05
Identities = 5/30 (16%), Positives = 7/30 (23%)
Query: 8 PITKKESTNHEGSNLTCGASSMQGWRIYQE 37
P + G R +QE
Sbjct: 8 PTIHVPLPPTSYPAFDAAIFTDIGGRKHQE 37
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics,
protein structure initiative, NEW YORK structural
research consortium, nysgxrc; 2.71A {Toxoplasma gondii}
Length = 377
Score = 38.1 bits (88), Expect = 4e-05
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 18 EGSNLTCGASSMQGWRIYQE 37
E C +++ + R E
Sbjct: 9 EEGRTVCASATSRNRRPTSE 28
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted
catalysis, dehydrogenase phosphatase, hydrolase; 2.38A
{Homo sapiens} PDB: 3qht_A 1l2n_A
Length = 389
Score = 32.9 bits (75), Expect = 0.004
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 10 TKKESTNHEGSNLTCGASSMQGWRIYQE 37
+ + S G +S G R E
Sbjct: 110 FQAGKPIPKISLENVGCASQIGKRKENE 137
>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain,
PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C
protein phosphatase; HET: A8S; 1.80A {Arabidopsis
thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B*
Length = 337
Score = 31.4 bits (71), Expect = 0.012
Identities = 7/28 (25%), Positives = 8/28 (28%)
Query: 10 TKKESTNHEGSNLTCGASSMQGWRIYQE 37
S G S+QG R E
Sbjct: 2 AMGRSVYELDCIPLWGTVSIQGNRSEME 29
>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2,
protein structure initiative, NEW YORK SGX research
center for structural genomics; 2.25A {Homo sapiens}
Length = 274
Score = 31.2 bits (71), Expect = 0.015
Identities = 6/18 (33%), Positives = 7/18 (38%)
Query: 20 SNLTCGASSMQGWRIYQE 37
S G +S G R E
Sbjct: 6 SLENVGCASQIGKRKENE 23
>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling
pathway, cell membr hydrolase, magnesium, manganese,
metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis
thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B*
Length = 316
Score = 30.6 bits (69), Expect = 0.022
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 20 SNLTCGASSMQGWRIYQE 37
S G +S+ G R E
Sbjct: 7 SVPLYGFTSICGRRPEME 24
>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting
protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles
gambiae}
Length = 358
Score = 25.0 bits (54), Expect = 2.7
Identities = 3/32 (9%), Positives = 6/32 (18%)
Query: 12 KESTNHEGSNLTCGASSMQGWRIYQEGAAVPC 43
++ E N + C
Sbjct: 13 NQTGVGEAINQIYKDDGRRCEGYESRDKKCLC 44
>2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B*
1sm1_B* 1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B
1nkw_B 3cf5_B* 3dll_B* 3pio_B* 3pip_B* 1pnu_B 1pny_B
1vor_E 1vou_E 1vow_E 1voy_E ...
Length = 211
Score = 24.8 bits (55), Expect = 2.8
Identities = 4/14 (28%), Positives = 10/14 (71%)
Query: 33 RIYQEGAAVPCSVL 46
+I++ A+P +V+
Sbjct: 13 QIWKNDRAIPVTVV 26
>3v2d_E 50S ribosomal protein L3; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus}
PDB: 1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E
2jl8_E 2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E
2wh4_E 2wrj_E 2wrl_E 2wro_E 2wrr_E ...
Length = 206
Score = 24.4 bits (54), Expect = 3.4
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 33 RIYQEGAAVPCSVL 46
RI+++ AVP +V+
Sbjct: 13 RIFRDDRAVPVTVI 26
>2o8m_A Protease; NS3, NS4A, viral protein; 2.00A {Hepatitis c virus} PDB:
3lon_A* 2a4g_A* 2a4q_A* 2fm2_A* 2obo_A* 2obq_A 2a4r_A*
2oc1_A* 2oc7_A* 2oc8_A* 3eyd_A* 3kf2_A 3kn2_A* 3knx_A*
2oc0_A* 3lox_A* 2oin_A 1rtl_A* 1rgq_A* 2f9v_A* ...
Length = 200
Score = 23.9 bits (51), Expect = 6.3
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 23 TCGASSMQGWRIYQEGAAVPCSVLFSNFIVILSP 56
TCG+S + + + + +P + +LSP
Sbjct: 109 TCGSSDL--YLVTRHADVIPVRRRGDSRGSLLSP 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.454
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,024,396
Number of extensions: 42799
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 15
Length of query: 71
Length of database: 6,701,793
Length adjustment: 41
Effective length of query: 30
Effective length of database: 5,557,032
Effective search space: 166710960
Effective search space used: 166710960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.7 bits)