Query psy7337
Match_columns 233
No_of_seqs 155 out of 495
Neff 5.7
Searched_HMMs 29240
Date Sat Aug 17 00:11:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7337.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7337hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ayc_A E3 ubiquitin-protein li 98.7 2.8E-08 9.6E-13 79.1 6.9 43 87-151 53-95 (138)
2 2ecm_A Ring finger and CHY zin 98.6 2.4E-08 8.1E-13 66.6 2.8 45 87-151 5-51 (55)
3 1chc_A Equine herpes virus-1 r 98.6 1.4E-08 4.9E-13 70.7 1.4 47 86-153 4-50 (68)
4 1iym_A EL5; ring-H2 finger, ub 98.5 3.3E-08 1.1E-12 66.0 3.0 47 85-151 3-51 (55)
5 2kiz_A E3 ubiquitin-protein li 98.5 8.2E-08 2.8E-12 67.0 3.2 36 85-120 12-48 (69)
6 2ep4_A Ring finger protein 24; 98.5 6.9E-08 2.4E-12 68.3 2.7 50 84-153 12-62 (74)
7 2ecl_A Ring-box protein 2; RNF 98.4 1.1E-07 3.8E-12 69.2 3.8 45 87-151 15-72 (81)
8 2ecn_A Ring finger protein 141 98.4 3.6E-08 1.2E-12 69.1 0.7 46 84-152 12-57 (70)
9 2l0b_A E3 ubiquitin-protein li 98.4 6.7E-08 2.3E-12 71.8 1.6 47 86-152 39-86 (91)
10 2ect_A Ring finger protein 126 98.4 1.2E-07 4.2E-12 67.7 2.8 48 85-152 13-61 (78)
11 1v87_A Deltex protein 2; ring- 98.4 2.1E-07 7.2E-12 71.1 3.5 35 86-120 24-74 (114)
12 1x4j_A Ring finger protein 38; 98.4 1.2E-07 4.3E-12 67.4 2.0 46 86-151 22-68 (75)
13 3dpl_R Ring-box protein 1; ubi 98.3 2.2E-07 7.6E-12 71.7 2.7 45 87-151 37-97 (106)
14 3ng2_A RNF4, snurf, ring finge 98.3 1.2E-07 4E-12 66.3 0.8 48 85-152 8-60 (71)
15 2ea6_A Ring finger protein 4; 98.3 1.4E-07 4.9E-12 65.2 1.2 49 84-152 12-65 (69)
16 2d8t_A Dactylidin, ring finger 98.3 2.6E-07 8.8E-12 65.1 2.4 45 86-152 14-58 (71)
17 2xeu_A Ring finger protein 4; 98.3 1.6E-07 5.5E-12 64.0 1.0 46 87-152 3-53 (64)
18 2djb_A Polycomb group ring fin 98.3 2.5E-07 8.7E-12 65.3 1.7 48 84-152 12-59 (72)
19 2ysl_A Tripartite motif-contai 98.2 5E-07 1.7E-11 63.5 2.9 35 84-120 17-51 (73)
20 2ct2_A Tripartite motif protei 98.2 5.3E-07 1.8E-11 65.3 2.6 37 84-120 12-50 (88)
21 2ckl_A Polycomb group ring fin 98.2 4.5E-07 1.5E-11 68.9 1.8 47 85-152 13-59 (108)
22 2ysj_A Tripartite motif-contai 98.2 1E-06 3.5E-11 60.4 3.4 35 84-120 17-51 (63)
23 2y43_A E3 ubiquitin-protein li 98.2 4.8E-07 1.6E-11 67.6 1.5 45 87-152 22-66 (99)
24 2ecj_A Tripartite motif-contai 98.1 9.1E-07 3.1E-11 59.3 2.6 34 85-120 13-46 (58)
25 1t1h_A Gspef-atpub14, armadill 98.1 9E-07 3.1E-11 63.1 2.0 48 84-152 5-52 (78)
26 2egp_A Tripartite motif-contai 98.1 1.3E-06 4.4E-11 62.1 2.7 35 84-120 9-43 (79)
27 2ecy_A TNF receptor-associated 98.1 1E-06 3.4E-11 61.1 1.7 47 85-152 13-59 (66)
28 2yur_A Retinoblastoma-binding 98.1 1.5E-06 5.2E-11 61.8 2.4 35 84-120 12-47 (74)
29 3fl2_A E3 ubiquitin-protein li 98.1 7.1E-07 2.4E-11 69.4 0.7 32 87-120 52-83 (124)
30 2csy_A Zinc finger protein 183 98.1 1E-06 3.4E-11 63.5 1.4 45 87-153 15-59 (81)
31 1g25_A CDK-activating kinase a 98.1 1.1E-06 3.7E-11 60.8 1.5 46 87-152 3-52 (65)
32 3lrq_A E3 ubiquitin-protein li 98.0 5.5E-07 1.9E-11 67.9 -0.1 33 87-120 22-54 (100)
33 2ecw_A Tripartite motif-contai 98.0 2.6E-06 8.8E-11 60.9 3.4 35 84-120 16-50 (85)
34 4a0k_B E3 ubiquitin-protein li 98.0 8.1E-07 2.8E-11 69.9 0.2 45 87-151 48-108 (117)
35 4ap4_A E3 ubiquitin ligase RNF 98.0 1.1E-06 3.8E-11 67.7 0.6 48 86-153 6-58 (133)
36 2ckl_B Ubiquitin ligase protei 98.0 2.5E-06 8.6E-11 69.4 2.6 45 88-152 55-99 (165)
37 2ecv_A Tripartite motif-contai 98.0 2.9E-06 9.8E-11 60.6 2.5 53 84-152 16-68 (85)
38 3l11_A E3 ubiquitin-protein li 97.9 4.3E-06 1.5E-10 64.0 2.6 47 87-154 15-61 (115)
39 2d8s_A Cellular modulator of i 97.9 6.2E-06 2.1E-10 60.4 3.0 35 86-120 14-53 (80)
40 3ztg_A E3 ubiquitin-protein li 97.9 6.8E-06 2.3E-10 60.2 3.2 36 83-120 9-45 (92)
41 1jm7_B BARD1, BRCA1-associated 97.9 3.2E-06 1.1E-10 65.2 1.3 43 87-152 22-64 (117)
42 1e4u_A Transcriptional repress 97.9 5.7E-06 2E-10 60.2 2.3 51 84-153 8-60 (78)
43 1bor_A Transcription factor PM 97.8 4.2E-06 1.4E-10 56.6 1.0 40 87-151 6-45 (56)
44 1jm7_A BRCA1, breast cancer ty 97.8 6E-06 2E-10 62.4 2.0 31 88-120 22-52 (112)
45 3hct_A TNF receptor-associated 97.7 6.1E-06 2.1E-10 63.7 1.0 34 85-120 16-49 (118)
46 4ap4_A E3 ubiquitin ligase RNF 97.7 9.1E-06 3.1E-10 62.5 1.9 45 88-152 73-122 (133)
47 2ct0_A Non-SMC element 1 homol 97.7 2.5E-05 8.5E-10 56.7 3.5 35 85-120 13-47 (74)
48 1rmd_A RAG1; V(D)J recombinati 97.6 2.1E-05 7.3E-10 60.1 2.6 45 87-152 23-67 (116)
49 1z6u_A NP95-like ring finger p 97.6 2.6E-05 8.9E-10 63.1 2.6 32 87-120 78-109 (150)
50 2f42_A STIP1 homology and U-bo 97.6 6.6E-05 2.2E-09 63.0 5.1 38 81-120 100-137 (179)
51 4ic3_A E3 ubiquitin-protein li 97.4 3.5E-05 1.2E-09 54.9 1.5 41 88-154 25-66 (74)
52 3t6p_A Baculoviral IAP repeat- 97.3 0.00045 1.5E-08 63.2 7.3 45 87-157 295-340 (345)
53 2c2l_A CHIP, carboxy terminus 97.2 0.00037 1.3E-08 59.7 5.9 37 82-120 203-239 (281)
54 3knv_A TNF receptor-associated 97.2 4.1E-05 1.4E-09 61.4 -0.6 35 84-120 28-62 (141)
55 2y1n_A E3 ubiquitin-protein li 97.2 0.00021 7.1E-09 66.6 3.8 45 88-153 333-377 (389)
56 3k1l_B Fancl; UBC, ring, RWD, 97.2 6.1E-05 2.1E-09 69.4 0.2 61 87-156 308-374 (381)
57 2ecg_A Baculoviral IAP repeat- 97.1 0.00011 3.7E-09 52.3 1.2 40 88-153 26-66 (75)
58 2yho_A E3 ubiquitin-protein li 97.1 8E-05 2.7E-09 54.0 0.0 44 88-157 19-63 (79)
59 1wgm_A Ubiquitin conjugation f 97.0 0.00026 8.9E-09 53.4 2.5 48 83-152 18-66 (98)
60 3hcs_A TNF receptor-associated 96.8 0.00048 1.7E-08 55.9 2.4 34 85-120 16-49 (170)
61 2vje_B MDM4 protein; proto-onc 96.8 0.00014 4.9E-09 50.2 -0.8 48 87-154 7-55 (63)
62 2ea5_A Cell growth regulator w 96.7 0.00072 2.5E-08 47.5 2.3 43 87-155 15-58 (68)
63 2kre_A Ubiquitin conjugation f 96.7 0.00058 2E-08 51.6 1.9 48 83-152 25-72 (100)
64 2kr4_A Ubiquitin conjugation f 96.5 0.0012 4E-08 48.2 2.6 47 84-152 11-57 (85)
65 1vyx_A ORF K3, K3RING; zinc-bi 96.5 0.0015 5E-08 45.1 2.8 45 87-151 6-55 (60)
66 1wim_A KIAA0161 protein; ring 96.4 0.00082 2.8E-08 49.5 1.1 33 88-120 6-39 (94)
67 2vje_A E3 ubiquitin-protein li 96.3 0.00057 1.9E-08 47.3 -0.1 49 86-154 7-56 (64)
68 2yu4_A E3 SUMO-protein ligase 96.3 0.0021 7E-08 47.6 2.7 34 86-120 6-39 (94)
69 3nw0_A Non-structural maintena 95.7 0.0097 3.3E-07 51.6 4.7 45 88-151 181-225 (238)
70 3htk_C E3 SUMO-protein ligase 95.4 0.0049 1.7E-07 54.6 1.8 32 88-120 182-213 (267)
71 3vk6_A E3 ubiquitin-protein li 95.3 0.0065 2.2E-07 46.5 1.8 45 89-153 3-47 (101)
72 2bay_A PRE-mRNA splicing facto 94.5 0.0081 2.8E-07 41.3 0.4 32 88-120 4-35 (61)
73 1l8d_A DNA double-strand break 94.3 0.11 3.6E-06 39.3 6.5 48 44-97 10-57 (112)
74 1zfo_A LAsp-1; LIM domain, zin 88.7 0.085 2.9E-06 31.5 0.1 29 87-116 3-31 (31)
75 4ayb_P DNA-directed RNA polyme 88.0 0.08 2.7E-06 35.0 -0.4 20 143-162 23-42 (48)
76 1joc_A EEA1, early endosomal a 85.7 5.7 0.0002 30.7 9.1 34 87-120 69-104 (125)
77 3na7_A HP0958; flagellar bioge 84.1 2.9 0.0001 35.9 7.4 12 144-155 223-234 (256)
78 3f6q_B LIM and senescent cell 83.8 0.38 1.3E-05 32.5 1.3 31 86-116 10-40 (72)
79 1wyh_A SLIM 2, skeletal muscle 82.9 0.43 1.5E-05 32.5 1.3 30 87-116 5-34 (72)
80 1x61_A Thyroid receptor intera 82.8 0.38 1.3E-05 32.8 1.0 30 87-116 5-34 (72)
81 1x4k_A Skeletal muscle LIM-pro 81.4 0.46 1.6E-05 32.3 1.0 30 87-116 5-34 (72)
82 1x4l_A Skeletal muscle LIM-pro 81.1 0.59 2E-05 31.9 1.5 30 87-116 5-36 (72)
83 2dj7_A Actin-binding LIM prote 79.5 0.8 2.7E-05 32.3 1.8 33 83-116 11-43 (80)
84 1g47_A Pinch protein; LIM doma 79.2 0.43 1.5E-05 32.9 0.3 30 87-116 11-40 (77)
85 1x68_A FHL5 protein; four-and- 78.8 0.77 2.6E-05 31.7 1.5 29 88-116 6-36 (76)
86 2lri_C Autoimmune regulator; Z 78.2 1 3.6E-05 31.3 2.0 33 86-120 11-43 (66)
87 1x62_A C-terminal LIM domain p 76.7 0.87 3E-05 31.8 1.3 28 87-116 15-42 (79)
88 2zet_C Melanophilin; complex, 75.7 16 0.00054 29.3 8.7 32 86-117 67-101 (153)
89 1nkp_A C-MYC, MYC proto-oncoge 75.5 14 0.00048 26.8 7.7 60 19-79 25-87 (88)
90 1x63_A Skeletal muscle LIM-pro 75.5 1.1 3.8E-05 31.2 1.6 30 87-116 15-44 (82)
91 1iml_A CRIP, cysteine rich int 74.7 0.75 2.6E-05 31.7 0.4 28 89-117 2-29 (76)
92 2egq_A FHL1 protein; LIM domai 74.7 0.86 2.9E-05 31.4 0.8 29 88-116 16-47 (77)
93 2d8y_A Eplin protein; LIM doma 74.4 1.7 5.8E-05 31.1 2.3 31 86-117 14-44 (91)
94 2cu8_A Cysteine-rich protein 2 74.1 1.1 3.9E-05 30.8 1.3 29 87-116 9-37 (76)
95 1nyp_A Pinch protein; LIM doma 71.8 1.3 4.5E-05 29.5 1.1 28 87-116 5-32 (66)
96 1zbd_B Rabphilin-3A; G protein 71.6 4.7 0.00016 31.7 4.5 73 39-119 15-90 (134)
97 1nlw_A MAD protein, MAX dimeri 71.5 14 0.00048 26.4 6.7 24 19-42 20-46 (80)
98 2ehe_A Four and A half LIM dom 70.9 1.4 4.7E-05 30.7 1.1 29 88-116 16-44 (82)
99 1x64_A Alpha-actinin-2 associa 70.6 1.6 5.5E-05 31.0 1.4 28 87-116 25-52 (89)
100 2vpb_A Hpygo1, pygopus homolog 70.5 2.7 9.2E-05 29.0 2.5 32 86-117 7-41 (65)
101 1wig_A KIAA1808 protein; LIM d 70.2 1.1 3.8E-05 30.9 0.5 27 88-116 6-32 (73)
102 2co8_A NEDD9 interacting prote 70.0 1.1 3.9E-05 31.6 0.5 31 86-117 14-44 (82)
103 2l3k_A Rhombotin-2, linker, LI 69.9 1.1 3.9E-05 33.9 0.5 30 88-117 9-38 (123)
104 2l4z_A DNA endonuclease RBBP8, 69.6 1.4 4.7E-05 33.8 0.9 28 88-116 62-89 (123)
105 3o36_A Transcription intermedi 68.5 2.1 7.1E-05 34.9 1.9 32 87-120 4-35 (184)
106 1f62_A Transcription factor WS 68.3 2.9 9.9E-05 26.9 2.2 32 89-120 2-34 (51)
107 2yt5_A Metal-response element- 67.9 2 6.8E-05 29.2 1.4 35 86-120 5-42 (66)
108 2cuq_A Four and A half LIM dom 67.1 2 6.7E-05 29.7 1.2 28 87-116 15-42 (80)
109 1wil_A KIAA1045 protein; ring 67.1 2.4 8.1E-05 31.4 1.7 31 86-119 14-47 (89)
110 1x6a_A LIMK-2, LIM domain kina 66.0 1.6 5.6E-05 30.3 0.7 27 88-116 16-42 (81)
111 2cup_A Skeletal muscle LIM-pro 65.6 1.8 6.2E-05 31.2 0.8 32 87-118 5-36 (101)
112 2d8z_A Four and A half LIM dom 65.6 1.9 6.4E-05 29.0 0.9 27 88-116 6-32 (70)
113 2dlo_A Thyroid receptor-intera 65.6 1.7 5.8E-05 30.2 0.7 29 86-116 14-42 (81)
114 2cur_A Skeletal muscle LIM-pro 65.3 1.6 5.3E-05 29.4 0.4 28 87-116 5-32 (69)
115 1a7i_A QCRP2 (LIM1); LIM domai 65.1 1.5 5E-05 30.6 0.2 30 87-117 7-36 (81)
116 1v6g_A Actin binding LIM prote 64.1 1.8 6.1E-05 30.1 0.5 27 88-116 16-42 (81)
117 3u5n_A E3 ubiquitin-protein li 64.0 1.8 6.2E-05 36.0 0.7 31 87-120 7-38 (207)
118 2d8x_A Protein pinch; LIM doma 63.6 1.7 5.7E-05 29.4 0.3 28 87-116 5-32 (70)
119 2dar_A PDZ and LIM domain prot 62.4 2.1 7.3E-05 30.4 0.7 27 88-116 26-52 (90)
120 2ysm_A Myeloid/lymphoid or mix 62.2 3.6 0.00012 30.7 1.9 35 86-120 6-41 (111)
121 2puy_A PHD finger protein 21A; 60.7 3.5 0.00012 27.6 1.5 32 87-120 5-36 (60)
122 1gmj_A ATPase inhibitor; coile 60.6 28 0.00097 25.4 6.4 39 34-72 41-79 (84)
123 1nkp_B MAX protein, MYC proto- 60.4 32 0.0011 24.2 6.8 57 20-77 22-80 (83)
124 3v43_A Histone acetyltransfera 60.2 5.3 0.00018 30.0 2.6 35 84-118 2-43 (112)
125 1j2o_A FLIN2, fusion of rhombo 59.1 3.7 0.00013 30.6 1.6 29 88-117 4-32 (114)
126 2iyb_E Testin, TESS, TES; LIM 58.8 2.5 8.6E-05 28.2 0.5 29 88-116 3-33 (65)
127 2rgt_A Fusion of LIM/homeobox 58.1 4.1 0.00014 32.4 1.8 29 88-116 66-94 (169)
128 3nmd_A CGMP dependent protein 58.1 44 0.0015 23.7 7.0 46 34-79 20-68 (72)
129 2cup_A Skeletal muscle LIM-pro 58.0 4 0.00014 29.3 1.5 29 88-116 67-95 (101)
130 2ro1_A Transcription intermedi 57.8 3.9 0.00013 33.7 1.6 32 87-120 2-33 (189)
131 2cor_A Pinch protein; LIM doma 57.5 2.9 9.8E-05 29.2 0.6 28 87-116 15-42 (79)
132 2xjy_A Rhombotin-2; oncoprotei 57.4 3.4 0.00012 31.2 1.1 28 89-116 68-95 (131)
133 2lbm_A Transcriptional regulat 57.2 5.5 0.00019 31.8 2.3 54 87-151 63-116 (142)
134 1m3v_A FLIN4, fusion of the LI 57.0 3.5 0.00012 31.1 1.1 31 87-118 5-35 (122)
135 2ku7_A MLL1 PHD3-CYP33 RRM chi 56.5 5.3 0.00018 29.7 2.1 37 107-152 8-44 (140)
136 2apo_B Ribosome biogenesis pro 56.2 3.7 0.00013 28.3 1.0 29 143-171 18-46 (60)
137 1wev_A Riken cDNA 1110020M19; 56.0 4.3 0.00015 29.5 1.4 35 86-120 15-52 (88)
138 3lqh_A Histone-lysine N-methyl 55.9 9.4 0.00032 31.5 3.6 31 87-117 2-37 (183)
139 3ql9_A Transcriptional regulat 55.6 7.3 0.00025 30.6 2.8 52 88-151 58-110 (129)
140 3gpv_A Transcriptional regulat 55.2 31 0.0011 26.9 6.5 41 13-54 68-112 (148)
141 1xwh_A Autoimmune regulator; P 55.1 3.8 0.00013 28.0 0.9 33 86-120 7-39 (66)
142 1q08_A Zn(II)-responsive regul 55.0 33 0.0011 24.3 6.2 19 11-30 9-27 (99)
143 1x3h_A Leupaxin; paxillin fami 54.7 3.2 0.00011 28.6 0.5 28 87-116 15-42 (80)
144 1rut_X Flinc4, fusion protein 54.6 3.9 0.00013 33.1 1.1 29 89-117 71-99 (188)
145 2yql_A PHD finger protein 21A; 54.0 3.4 0.00012 27.3 0.5 33 86-120 8-40 (56)
146 1r79_A Diacylglycerol kinase, 53.7 9.5 0.00033 27.7 2.9 33 87-119 38-74 (84)
147 2k16_A Transcription initiatio 53.4 8.2 0.00028 26.7 2.5 32 88-120 19-52 (75)
148 2l5u_A Chromodomain-helicase-D 53.1 8.6 0.00029 25.8 2.5 33 85-120 9-42 (61)
149 1r8e_A Multidrug-efflux transp 51.4 76 0.0026 26.3 8.8 47 11-60 56-102 (278)
150 1rut_X Flinc4, fusion protein 51.3 6.3 0.00022 31.9 1.8 30 88-118 6-35 (188)
151 2l43_A N-teminal domain from h 51.2 7.2 0.00025 28.3 2.0 37 83-119 21-60 (88)
152 3gp4_A Transcriptional regulat 51.2 41 0.0014 26.1 6.6 64 6-70 45-114 (142)
153 1mm2_A MI2-beta; PHD, zinc fin 51.1 3.9 0.00013 27.6 0.4 32 87-120 9-40 (61)
154 2xjy_A Rhombotin-2; oncoprotei 50.5 5.6 0.00019 29.9 1.3 29 88-117 3-31 (131)
155 1yuz_A Nigerythrin; rubrythrin 50.3 1.1E+02 0.0036 25.3 9.5 37 8-45 78-115 (202)
156 2rgt_A Fusion of LIM/homeobox 48.2 5.4 0.00019 31.7 0.9 29 88-117 7-35 (169)
157 2xqn_T Testin, TESS; metal-bin 48.0 6.2 0.00021 29.5 1.2 29 88-116 64-94 (126)
158 2ysm_A Myeloid/lymphoid or mix 47.4 8.5 0.00029 28.6 1.9 32 89-120 56-88 (111)
159 2ku3_A Bromodomain-containing 46.7 12 0.00041 26.1 2.5 34 86-119 15-51 (71)
160 3asl_A E3 ubiquitin-protein li 46.2 7.3 0.00025 27.1 1.2 32 89-120 20-52 (70)
161 2jtn_A LIM domain-binding prot 46.0 6.7 0.00023 31.5 1.2 65 87-152 60-128 (182)
162 1we9_A PHD finger family prote 45.8 9.7 0.00033 25.5 1.8 33 87-119 6-40 (64)
163 2xqn_T Testin, TESS; metal-bin 45.4 8.4 0.00029 28.8 1.6 65 88-153 4-73 (126)
164 2e6s_A E3 ubiquitin-protein li 45.2 7 0.00024 27.8 1.0 33 88-120 27-60 (77)
165 2ve7_C Kinetochore protein NUF 45.0 21 0.00071 30.8 4.2 71 10-80 97-177 (250)
166 2jtn_A LIM domain-binding prot 44.5 5.2 0.00018 32.2 0.3 29 88-116 120-148 (182)
167 1ptq_A Protein kinase C delta 43.9 15 0.0005 23.1 2.4 32 87-118 11-45 (50)
168 1d8j_A General transcription f 43.3 20 0.0007 26.0 3.3 42 5-46 11-59 (81)
169 3mq7_A Bone marrow stromal ant 43.0 96 0.0033 24.0 7.2 46 34-79 54-99 (121)
170 2kwj_A Zinc finger protein DPF 42.9 9.6 0.00033 28.7 1.6 33 88-120 59-92 (114)
171 2aus_D NOP10, ribosome biogene 42.7 7.8 0.00027 26.6 0.9 30 143-172 17-46 (60)
172 2jun_A Midline-1; B-BOX, TRIM, 42.4 8.4 0.00029 27.7 1.1 31 88-118 4-35 (101)
173 2w83_C C-JUN-amino-terminal ki 41.8 72 0.0025 22.8 5.9 44 35-78 28-71 (77)
174 4dzn_A Coiled-coil peptide CC- 39.5 44 0.0015 19.7 3.7 29 52-80 3-31 (33)
175 2e6r_A Jumonji/ARID domain-con 39.3 6.5 0.00022 28.8 0.1 34 87-120 16-50 (92)
176 2vrw_B P95VAV, VAV1, proto-onc 39.2 24 0.00083 31.5 3.9 32 87-118 357-391 (406)
177 2xb1_A Pygopus homolog 2, B-ce 38.9 18 0.00062 27.0 2.5 32 87-118 3-37 (105)
178 3v43_A Histone acetyltransfera 38.3 12 0.00042 27.9 1.5 33 88-120 62-96 (112)
179 1fp0_A KAP-1 corepressor; PHD 37.9 9.4 0.00032 28.0 0.8 33 86-120 24-56 (88)
180 1wew_A DNA-binding family prot 37.1 16 0.00056 25.6 1.9 30 88-119 17-50 (78)
181 1b8t_A Protein (CRP1); LIM dom 37.1 8.7 0.0003 31.1 0.5 64 88-152 116-184 (192)
182 3shb_A E3 ubiquitin-protein li 35.9 11 0.00037 26.8 0.8 31 89-120 28-60 (77)
183 2kgg_A Histone demethylase jar 35.5 15 0.00053 23.7 1.5 31 89-119 4-37 (52)
184 1b8t_A Protein (CRP1); LIM dom 35.0 9.6 0.00033 30.8 0.5 32 86-118 6-37 (192)
185 3uej_A NPKC-delta, protein kin 34.1 24 0.00084 23.6 2.4 33 87-119 20-55 (65)
186 2k6x_A Sigma-A, RNA polymerase 33.5 65 0.0022 22.0 4.6 28 6-33 10-37 (72)
187 3ttc_A HYPF, transcriptional r 33.5 9.5 0.00033 37.5 0.2 29 113-153 71-99 (657)
188 1faq_A RAF-1; transferase, ser 33.3 9.1 0.00031 24.4 0.0 30 88-118 15-44 (52)
189 2yuu_A NPKC-delta, protein kin 33.1 19 0.00064 25.5 1.7 33 87-119 28-63 (83)
190 3htk_A Structural maintenance 33.0 93 0.0032 20.2 5.2 25 53-77 28-52 (60)
191 1fxk_A Prefoldin; archaeal pro 31.3 1.4E+02 0.0048 21.2 6.4 42 34-75 62-103 (107)
192 1kbe_A Kinase suppressor of RA 31.3 8.6 0.0003 25.1 -0.3 29 88-117 15-43 (49)
193 1rfh_A RAS association (ralgds 30.6 21 0.00071 23.7 1.5 31 88-118 23-53 (59)
194 2lv9_A Histone-lysine N-methyl 30.5 19 0.00066 26.4 1.4 31 88-119 29-60 (98)
195 2zqm_A Prefoldin beta subunit 29.7 1.6E+02 0.0054 21.3 7.5 46 34-79 67-112 (117)
196 2enz_A NPKC-theta, protein kin 28.4 29 0.00098 23.2 2.0 31 88-118 24-57 (65)
197 2fnf_X Putative RAS effector N 28.3 35 0.0012 23.6 2.4 32 87-118 35-66 (72)
198 1wg2_A Zinc finger (AN1-like) 28.3 23 0.00079 24.6 1.4 29 87-119 15-43 (64)
199 1weo_A Cellulose synthase, cat 28.2 33 0.0011 25.5 2.3 49 86-153 15-68 (93)
200 1zxa_A CGMP-dependent protein 28.0 1.2E+02 0.004 21.1 5.0 42 38-79 12-53 (67)
201 2gmg_A Hypothetical protein PF 27.9 12 0.00042 28.4 -0.1 23 8-31 14-36 (105)
202 1wfh_A Zinc finger (AN1-like) 27.2 25 0.00087 24.4 1.5 30 87-120 15-44 (64)
203 1q06_A Transcriptional regulat 26.9 2E+02 0.007 21.6 7.0 17 13-30 52-68 (135)
204 1v5n_A PDI-like hypothetical p 26.9 25 0.00085 25.4 1.5 31 88-119 48-79 (89)
205 2ri7_A Nucleosome-remodeling f 26.2 33 0.0011 27.1 2.3 30 87-117 8-39 (174)
206 3vth_A Hydrogenase maturation 26.1 32 0.0011 34.3 2.6 55 87-153 111-193 (761)
207 3ask_A E3 ubiquitin-protein li 26.1 17 0.00057 31.2 0.5 32 89-120 176-208 (226)
208 1fxk_C Protein (prefoldin); ar 24.9 2.2E+02 0.0074 21.2 7.1 46 34-79 85-130 (133)
209 1wfp_A Zinc finger (AN1-like) 24.9 26 0.00089 25.0 1.2 30 87-120 25-54 (74)
210 2v66_B Nuclear distribution pr 24.6 2.3E+02 0.0078 21.4 7.2 44 35-78 19-62 (111)
211 1y8f_A UNC-13 homolog A, MUNC1 23.8 47 0.0016 22.2 2.4 33 87-119 24-59 (66)
212 2rsd_A E3 SUMO-protein ligase 23.6 25 0.00084 23.9 0.9 30 88-118 11-43 (68)
213 1wff_A Riken cDNA 2810002D23 p 23.1 29 0.001 25.4 1.2 29 88-120 26-55 (85)
214 1l8d_A DNA double-strand break 23.0 1.8E+02 0.0062 20.9 5.8 36 45-80 65-100 (112)
215 2lcq_A Putative toxin VAPC6; P 22.9 35 0.0012 26.8 1.8 9 144-152 149-157 (165)
216 3o70_A PHD finger protein 13; 22.9 45 0.0015 22.8 2.1 39 80-119 12-51 (68)
217 2eli_A Protein kinase C alpha 22.7 29 0.00098 24.7 1.1 33 87-119 28-63 (85)
218 3rrk_A V-type ATPase 116 kDa s 22.1 2.9E+02 0.0098 23.9 7.8 25 5-29 24-48 (357)
219 1use_A VAsp, vasodilator-stimu 21.5 1.7E+02 0.0058 18.8 6.2 26 33-61 7-32 (45)
220 2k5c_A Uncharacterized protein 21.5 23 0.00077 26.0 0.3 9 144-152 9-17 (95)
221 1wem_A Death associated transc 21.2 52 0.0018 22.6 2.2 29 88-118 17-47 (76)
222 2w6a_A ARF GTPase-activating p 21.0 2.1E+02 0.007 19.6 7.3 48 31-79 8-55 (63)
223 1tjl_A DNAK suppressor protein 20.9 2.4E+02 0.0084 22.1 6.4 24 34-57 36-59 (151)
224 2yy0_A C-MYC-binding protein; 20.6 1.4E+02 0.0048 19.5 4.1 26 53-78 21-46 (53)
225 2db6_A SH3 and cysteine rich d 20.6 19 0.00065 25.0 -0.2 32 88-119 29-63 (74)
226 2wuj_A Septum site-determining 20.4 1.2E+02 0.0042 19.9 3.8 29 34-62 24-52 (57)
227 3trt_A Vimentin; cytoskeleton, 20.4 2.1E+02 0.0071 19.4 6.7 11 49-59 33-43 (77)
228 3q0x_A Centriole protein; cent 20.2 2.8E+02 0.0095 23.5 7.0 43 36-78 163-205 (228)
No 1
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.69 E-value=2.8e-08 Score=79.11 Aligned_cols=43 Identities=28% Similarity=0.675 Sum_probs=34.6
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCCh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGS 151 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~ 151 (233)
...|++|...+ ..| ++.||||.||..|+..|+.. ...||+|+.
T Consensus 53 ~~~C~iC~~~~-~~~-~~~~CgH~fc~~Ci~~~~~~--------------------~~~CP~Cr~ 95 (138)
T 4ayc_A 53 ELQCIICSEYF-IEA-VTLNCAHSFCSYCINEWMKR--------------------KIECPICRK 95 (138)
T ss_dssp HSBCTTTCSBC-SSE-EEETTSCEEEHHHHHHHTTT--------------------CSBCTTTCC
T ss_pred cCCCcccCccc-CCc-eECCCCCCccHHHHHHHHHc--------------------CCcCCCCCC
Confidence 35799999987 444 56799999999999999621 368999986
No 2
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.57 E-value=2.4e-08 Score=66.62 Aligned_cols=45 Identities=27% Similarity=0.749 Sum_probs=37.0
Q ss_pred CCchhhhhhccCC--CCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCCh
Q psy7337 87 CDTCLLCEVQLVS--NTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGS 151 (233)
Q Consensus 87 ~~~C~~C~~~L~~--~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~ 151 (233)
...|++|...+.. .+.++++|||.||..|+..|+. . ...||+|+.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------------------~--~~~CP~Cr~ 51 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK------------------E--GYRCPLCSG 51 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHH------------------H--TCCCTTSCC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHH------------------c--CCcCCCCCC
Confidence 4679999999854 4688999999999999999951 1 268999986
No 3
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.55 E-value=1.4e-08 Score=70.66 Aligned_cols=47 Identities=28% Similarity=0.605 Sum_probs=38.2
Q ss_pred CCCchhhhhhccCCCCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChhh
Q psy7337 86 NCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSHM 153 (233)
Q Consensus 86 ~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~~ 153 (233)
.+..|++|...+ ..+.+++||||.||..|+..|+. ....||+|+...
T Consensus 4 ~~~~C~IC~~~~-~~~~~~~~C~H~fc~~Ci~~~~~--------------------~~~~CP~Cr~~~ 50 (68)
T 1chc_A 4 VAERCPICLEDP-SNYSMALPCLHAFCYVCITRWIR--------------------QNPTCPLCKVPV 50 (68)
T ss_dssp CCCCCSSCCSCC-CSCEEETTTTEEESTTHHHHHHH--------------------HSCSTTTTCCCC
T ss_pred CCCCCeeCCccc-cCCcEecCCCCeeHHHHHHHHHh--------------------CcCcCcCCChhh
Confidence 356899999997 56778999999999999999951 136899998743
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.55 E-value=3.3e-08 Score=66.01 Aligned_cols=47 Identities=30% Similarity=0.745 Sum_probs=37.0
Q ss_pred cCCCchhhhhhccCC-CCeEEec-CCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCCh
Q psy7337 85 QNCDTCLLCEVQLVS-NTFYIFP-CGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGS 151 (233)
Q Consensus 85 ~~~~~C~~C~~~L~~-~~f~vFp-CgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~ 151 (233)
+.+..|++|...+.. ......+ |||.||..|+..|+.. ...||+|+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--------------------~~~CP~Cr~ 51 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--------------------HSTCPLCRL 51 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--------------------CCSCSSSCC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--------------------CCcCcCCCC
Confidence 456789999999854 3456676 9999999999999721 368999986
No 5
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.46 E-value=8.2e-08 Score=67.05 Aligned_cols=36 Identities=31% Similarity=0.610 Sum_probs=30.1
Q ss_pred cCCCchhhhhhccCC-CCeEEecCCCccchhhhhhcC
Q psy7337 85 QNCDTCLLCEVQLVS-NTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 85 ~~~~~C~~C~~~L~~-~~f~vFpCgH~FH~~CL~~~~ 120 (233)
.....|++|...+.. .+.+++||||.||..|+..|+
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~ 48 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWL 48 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHH
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHH
Confidence 345689999998853 567889999999999999995
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=6.9e-08 Score=68.33 Aligned_cols=50 Identities=26% Similarity=0.769 Sum_probs=38.7
Q ss_pred ccCCCchhhhhhccCC-CCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChhh
Q psy7337 84 IQNCDTCLLCEVQLVS-NTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSHM 153 (233)
Q Consensus 84 I~~~~~C~~C~~~L~~-~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~~ 153 (233)
+.....|++|...+.. ....++||||.||..|+..|+. ....||+|...+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~--------------------~~~~CP~Cr~~~ 62 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLE--------------------VRKVCPLCNMPV 62 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHH--------------------HCSBCTTTCCBC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHH--------------------cCCcCCCcCccc
Confidence 4456789999999853 4466779999999999999951 125899998744
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=1.1e-07 Score=69.24 Aligned_cols=45 Identities=33% Similarity=0.979 Sum_probs=33.7
Q ss_pred CCchhhhhhccCC------------CCeEEe-cCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCCh
Q psy7337 87 CDTCLLCEVQLVS------------NTFYIF-PCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGS 151 (233)
Q Consensus 87 ~~~C~~C~~~L~~------------~~f~vF-pCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~ 151 (233)
+..|++|...+.. ...++. +|||.||.+||.+|+.. ...||+|..
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--------------------~~~CP~CR~ 72 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ--------------------NNRCPLCQQ 72 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT--------------------CCBCTTTCC
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh--------------------CCCCCCcCC
Confidence 4679999888843 224444 59999999999999721 368999986
No 8
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=3.6e-08 Score=69.07 Aligned_cols=46 Identities=30% Similarity=0.751 Sum_probs=37.3
Q ss_pred ccCCCchhhhhhccCCCCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChh
Q psy7337 84 IQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSH 152 (233)
Q Consensus 84 I~~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~ 152 (233)
+.....|++|...+.. ++.||||.||..|+..|+. -...||+|+..
T Consensus 12 ~~~~~~C~IC~~~~~~---~~~~CgH~fc~~Ci~~~~~--------------------~~~~CP~Cr~~ 57 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD---LILPCAHSFCQKCIDKWSD--------------------RHRNCPICRLQ 57 (70)
T ss_dssp CCCCCCCSSSCCSCCS---EEETTTEEECHHHHHHSSC--------------------CCSSCHHHHHC
T ss_pred CCCCCCCeeCCcCccC---cccCCCCcccHHHHHHHHH--------------------CcCcCCCcCCc
Confidence 3445789999998754 8899999999999999972 13689999763
No 9
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.40 E-value=6.7e-08 Score=71.76 Aligned_cols=47 Identities=30% Similarity=0.633 Sum_probs=37.0
Q ss_pred CCCchhhhhhccCC-CCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChh
Q psy7337 86 NCDTCLLCEVQLVS-NTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSH 152 (233)
Q Consensus 86 ~~~~C~~C~~~L~~-~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~ 152 (233)
....|++|...+.. ....+.||||.||..|+..|+.. ...||+|...
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~--------------------~~~CP~Cr~~ 86 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK--------------------SGTCPVCRCM 86 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT--------------------TCBCTTTCCB
T ss_pred CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc--------------------CCcCcCcCcc
Confidence 34579999988754 44677999999999999999621 3689999863
No 10
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.39 E-value=1.2e-07 Score=67.69 Aligned_cols=48 Identities=29% Similarity=0.701 Sum_probs=37.9
Q ss_pred cCCCchhhhhhccCC-CCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChh
Q psy7337 85 QNCDTCLLCEVQLVS-NTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSH 152 (233)
Q Consensus 85 ~~~~~C~~C~~~L~~-~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~ 152 (233)
.....|++|...+.. ....+++|||.||..|+..|+.. ...||+|+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--------------------~~~CP~Cr~~ 61 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ--------------------HDSCPVCRKS 61 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT--------------------TCSCTTTCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc--------------------CCcCcCcCCc
Confidence 445789999999854 35677899999999999999621 2689999864
No 11
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.36 E-value=2.1e-07 Score=71.08 Aligned_cols=35 Identities=23% Similarity=0.583 Sum_probs=27.7
Q ss_pred CCCchhhhhhccCCC----------------CeEEecCCCccchhhhhhcC
Q psy7337 86 NCDTCLLCEVQLVSN----------------TFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 86 ~~~~C~~C~~~L~~~----------------~f~vFpCgH~FH~~CL~~~~ 120 (233)
.+..|++|...+... ...+.+|||.||..||..|+
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl 74 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMY 74 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHH
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHH
Confidence 457899999998431 22367899999999999996
No 12
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.35 E-value=1.2e-07 Score=67.37 Aligned_cols=46 Identities=30% Similarity=0.845 Sum_probs=36.4
Q ss_pred CCCchhhhhhccCC-CCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCCh
Q psy7337 86 NCDTCLLCEVQLVS-NTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGS 151 (233)
Q Consensus 86 ~~~~C~~C~~~L~~-~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~ 151 (233)
....|++|...+.. ..+.+.||||.||..|+..|+. ....||+|..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~--------------------~~~~CP~Cr~ 68 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLK--------------------ANRTCPICRA 68 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHH--------------------HCSSCTTTCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHH--------------------cCCcCcCcCC
Confidence 34679999999854 3467889999999999999951 1368999985
No 13
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.31 E-value=2.2e-07 Score=71.67 Aligned_cols=45 Identities=31% Similarity=0.654 Sum_probs=36.0
Q ss_pred CCchhhhhhccCCC----------------CeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCC
Q psy7337 87 CDTCLLCEVQLVSN----------------TFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCG 150 (233)
Q Consensus 87 ~~~C~~C~~~L~~~----------------~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG 150 (233)
++.|++|...+... +.+..+|||.||.+|+..|+.. ...||+|.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--------------------~~~CP~Cr 96 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------------------RQVCPLDN 96 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--------------------CSBCSSSC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--------------------CCcCcCCC
Confidence 47799999887532 4677889999999999999621 36899998
Q ss_pred h
Q psy7337 151 S 151 (233)
Q Consensus 151 ~ 151 (233)
.
T Consensus 97 ~ 97 (106)
T 3dpl_R 97 R 97 (106)
T ss_dssp S
T ss_pred C
Confidence 6
No 14
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.30 E-value=1.2e-07 Score=66.28 Aligned_cols=48 Identities=27% Similarity=0.659 Sum_probs=37.2
Q ss_pred cCCCchhhhhhccCC-----CCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChh
Q psy7337 85 QNCDTCLLCEVQLVS-----NTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSH 152 (233)
Q Consensus 85 ~~~~~C~~C~~~L~~-----~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~ 152 (233)
.....|++|...+.. ...+..+|||.||..|+..|+. . ...||+|+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------------------~--~~~CP~Cr~~ 60 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK------------------N--ANTCPTCRKK 60 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH------------------H--CSBCTTTCCB
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH------------------c--CCCCCCCCCc
Confidence 345779999988742 3458889999999999999951 1 2689999863
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=1.4e-07 Score=65.23 Aligned_cols=49 Identities=27% Similarity=0.628 Sum_probs=37.6
Q ss_pred ccCCCchhhhhhccCC-----CCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChh
Q psy7337 84 IQNCDTCLLCEVQLVS-----NTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSH 152 (233)
Q Consensus 84 I~~~~~C~~C~~~L~~-----~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~ 152 (233)
+.....|++|...+.. ..+++.+|||.||..|+..|+. . ...||+|+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------------------~--~~~CP~Cr~~ 65 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK------------------N--ANTCPTCRKK 65 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH------------------H--CSSCTTTCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH------------------c--CCCCCCCCCc
Confidence 3445789999998742 3358889999999999999951 1 3689999863
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=2.6e-07 Score=65.14 Aligned_cols=45 Identities=20% Similarity=0.535 Sum_probs=35.6
Q ss_pred CCCchhhhhhccCCCCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChh
Q psy7337 86 NCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSH 152 (233)
Q Consensus 86 ~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~ 152 (233)
....|++|...+ ..+ +.++|||.||..|+..|+.. ...||+|+..
T Consensus 14 ~~~~C~IC~~~~-~~~-~~~~CgH~fC~~Ci~~~~~~--------------------~~~CP~Cr~~ 58 (71)
T 2d8t_A 14 TVPECAICLQTC-VHP-VSLPCKHVFCYLCVKGASWL--------------------GKRCALCRQE 58 (71)
T ss_dssp SCCBCSSSSSBC-SSE-EEETTTEEEEHHHHHHCTTC--------------------SSBCSSSCCB
T ss_pred CCCCCccCCccc-CCC-EEccCCCHHHHHHHHHHHHC--------------------CCcCcCcCch
Confidence 346799999887 444 66799999999999999621 2689999874
No 17
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.27 E-value=1.6e-07 Score=64.01 Aligned_cols=46 Identities=28% Similarity=0.680 Sum_probs=36.3
Q ss_pred CCchhhhhhccCC-----CCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChh
Q psy7337 87 CDTCLLCEVQLVS-----NTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSH 152 (233)
Q Consensus 87 ~~~C~~C~~~L~~-----~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~ 152 (233)
...|++|...+.. ...++.+|||.||..|+..|+. . ...||+|+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------------------~--~~~CP~Cr~~ 53 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK------------------N--ANTCPTCRKK 53 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH------------------H--CSBCTTTCCB
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH------------------c--CCCCCCCCcc
Confidence 4579999998742 3468889999999999999951 1 3689999874
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=2.5e-07 Score=65.33 Aligned_cols=48 Identities=31% Similarity=0.599 Sum_probs=37.8
Q ss_pred ccCCCchhhhhhccCCCCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChh
Q psy7337 84 IQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSH 152 (233)
Q Consensus 84 I~~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~ 152 (233)
+.....|++|...+ ..|..+.+|||.||..|+..|+. . ...||+|+..
T Consensus 12 ~~~~~~C~IC~~~~-~~p~~~~~CgH~fC~~Ci~~~~~------------------~--~~~CP~Cr~~ 59 (72)
T 2djb_A 12 LTPYILCSICKGYL-IDATTITECLHTFCKSCIVRHFY------------------Y--SNRCPKCNIV 59 (72)
T ss_dssp CCGGGSCTTTSSCC-SSCEECSSSCCEECHHHHHHHHH------------------H--CSSCTTTCCC
T ss_pred cCCCCCCCCCChHH-HCcCEECCCCCHHHHHHHHHHHH------------------c--CCcCCCcCcc
Confidence 34456899999887 55766669999999999999951 1 3689999874
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=5e-07 Score=63.46 Aligned_cols=35 Identities=31% Similarity=0.567 Sum_probs=28.3
Q ss_pred ccCCCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 84 IQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 84 I~~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
+.....|++|...+ ..|. +++|||.||..|+..|+
T Consensus 17 ~~~~~~C~IC~~~~-~~~~-~~~CgH~fC~~Ci~~~~ 51 (73)
T 2ysl_A 17 LQEEVICPICLDIL-QKPV-TIDCGHNFCLKCITQIG 51 (73)
T ss_dssp CCCCCBCTTTCSBC-SSEE-ECTTCCEEEHHHHHHHC
T ss_pred CccCCEeccCCccc-CCeE-EcCCCChhhHHHHHHHH
Confidence 34457899999987 4454 45999999999999997
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=5.3e-07 Score=65.31 Aligned_cols=37 Identities=22% Similarity=0.568 Sum_probs=29.8
Q ss_pred ccCCCchhhhhhccCCCC--eEEecCCCccchhhhhhcC
Q psy7337 84 IQNCDTCLLCEVQLVSNT--FYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 84 I~~~~~C~~C~~~L~~~~--f~vFpCgH~FH~~CL~~~~ 120 (233)
+.....|++|...+.... .++++|||.||..|+..|+
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~ 50 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLL 50 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHH
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHH
Confidence 344568999999885432 6778999999999999995
No 21
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.18 E-value=4.5e-07 Score=68.88 Aligned_cols=47 Identities=32% Similarity=0.689 Sum_probs=37.1
Q ss_pred cCCCchhhhhhccCCCCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChh
Q psy7337 85 QNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSH 152 (233)
Q Consensus 85 ~~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~ 152 (233)
.....|++|...+ ..|..+.+|||.||..|+..|+.. ...||+|+..
T Consensus 13 ~~~~~C~IC~~~~-~~p~~~~~CgH~fC~~Ci~~~~~~--------------------~~~CP~Cr~~ 59 (108)
T 2ckl_A 13 NPHLMCVLCGGYF-IDATTIIECLHSFCKTCIVRYLET--------------------SKYCPICDVQ 59 (108)
T ss_dssp GGGTBCTTTSSBC-SSEEEETTTCCEEEHHHHHHHHTS--------------------CSBCTTTCCB
T ss_pred CCcCCCccCChHH-hCcCEeCCCCChhhHHHHHHHHHh--------------------CCcCcCCCcc
Confidence 3456899999887 567666699999999999999521 2689999973
No 22
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=1e-06 Score=60.38 Aligned_cols=35 Identities=34% Similarity=0.583 Sum_probs=28.7
Q ss_pred ccCCCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 84 IQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 84 I~~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
+.....|++|...+ ..|..+ +|||.||..|+..|+
T Consensus 17 ~~~~~~C~IC~~~~-~~p~~~-~CgH~fC~~Ci~~~~ 51 (63)
T 2ysj_A 17 LQEEVICPICLDIL-QKPVTI-DCGHNFCLKCITQIG 51 (63)
T ss_dssp CCCCCBCTTTCSBC-SSCEEC-TTSSEECHHHHHHHH
T ss_pred CccCCCCCcCCchh-CCeEEe-CCCCcchHHHHHHHH
Confidence 34557899999987 566554 999999999999995
No 23
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.16 E-value=4.8e-07 Score=67.63 Aligned_cols=45 Identities=27% Similarity=0.528 Sum_probs=35.9
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSH 152 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~ 152 (233)
...|++|...+ ..|....+|||.||..|+..|+.. ...||+|+..
T Consensus 22 ~~~C~IC~~~~-~~p~~~~~CgH~fC~~Ci~~~~~~--------------------~~~CP~Cr~~ 66 (99)
T 2y43_A 22 LLRCGICFEYF-NIAMIIPQCSHNYCSLCIRKFLSY--------------------KTQCPTCCVT 66 (99)
T ss_dssp HTBCTTTCSBC-SSEEECTTTCCEEEHHHHHHHHTT--------------------CCBCTTTCCB
T ss_pred CCCcccCChhh-CCcCEECCCCCHhhHHHHHHHHHC--------------------CCCCCCCCCc
Confidence 35799999987 566666689999999999999521 2589999974
No 24
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=9.1e-07 Score=59.25 Aligned_cols=34 Identities=32% Similarity=0.630 Sum_probs=28.1
Q ss_pred cCCCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 85 QNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 85 ~~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
.....|++|...+ ..| ++.+|||.||..|+..|+
T Consensus 13 ~~~~~C~IC~~~~-~~p-~~~~CgH~fC~~Ci~~~~ 46 (58)
T 2ecj_A 13 QVEASCSVCLEYL-KEP-VIIECGHNFCKACITRWW 46 (58)
T ss_dssp CCCCBCSSSCCBC-SSC-CCCSSCCCCCHHHHHHHT
T ss_pred ccCCCCccCCccc-Ccc-EeCCCCCccCHHHHHHHH
Confidence 4457899999997 455 447999999999999995
No 25
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.10 E-value=9e-07 Score=63.09 Aligned_cols=48 Identities=17% Similarity=0.308 Sum_probs=37.0
Q ss_pred ccCCCchhhhhhccCCCCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChh
Q psy7337 84 IQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSH 152 (233)
Q Consensus 84 I~~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~ 152 (233)
+.....|++|...+ ..|.. .+|||.|+..|+..|+.. -...||+|+..
T Consensus 5 ~~~~~~C~IC~~~~-~~Pv~-~~CgH~fc~~Ci~~~~~~-------------------~~~~CP~C~~~ 52 (78)
T 1t1h_A 5 FPEYFRCPISLELM-KDPVI-VSTGQTYERSSIQKWLDA-------------------GHKTCPKSQET 52 (78)
T ss_dssp CSSSSSCTTTSCCC-SSEEE-ETTTEEEEHHHHHHHHTT-------------------TCCBCTTTCCB
T ss_pred CcccCCCCCccccc-cCCEE-cCCCCeecHHHHHHHHHH-------------------CcCCCCCCcCC
Confidence 44567899999987 66654 599999999999999620 02589999974
No 26
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.10 E-value=1.3e-06 Score=62.13 Aligned_cols=35 Identities=29% Similarity=0.621 Sum_probs=28.7
Q ss_pred ccCCCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 84 IQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 84 I~~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
+.....|++|...+ ..|.. ++|||.||..|+..|+
T Consensus 9 ~~~~~~C~IC~~~~-~~p~~-l~CgH~fC~~Ci~~~~ 43 (79)
T 2egp_A 9 VQEEVTCPICLELL-TEPLS-LDCGHSLCRACITVSN 43 (79)
T ss_dssp CCCCCEETTTTEEC-SSCCC-CSSSCCCCHHHHSCCC
T ss_pred cccCCCCcCCCccc-CCeeE-CCCCCHHHHHHHHHHH
Confidence 34557899999987 55654 6999999999999997
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=1e-06 Score=61.10 Aligned_cols=47 Identities=26% Similarity=0.563 Sum_probs=36.0
Q ss_pred cCCCchhhhhhccCCCCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChh
Q psy7337 85 QNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSH 152 (233)
Q Consensus 85 ~~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~ 152 (233)
.....|++|...+ ..|+. .+|||.||..|+..|+.. -...||+|+..
T Consensus 13 ~~~~~C~IC~~~~-~~p~~-~~CgH~fC~~Ci~~~~~~-------------------~~~~CP~Cr~~ 59 (66)
T 2ecy_A 13 EDKYKCEKCHLVL-CSPKQ-TECGHRFCESCMAALLSS-------------------SSPKCTACQES 59 (66)
T ss_dssp CCCEECTTTCCEE-SSCCC-CSSSCCCCHHHHHHHHTT-------------------SSCCCTTTCCC
T ss_pred CcCCCCCCCChHh-cCeeE-CCCCCHHHHHHHHHHHHh-------------------CcCCCCCCCcC
Confidence 3456799999987 56655 699999999999999520 12589999863
No 28
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.06 E-value=1.5e-06 Score=61.77 Aligned_cols=35 Identities=29% Similarity=0.774 Sum_probs=28.2
Q ss_pred ccCCCchhhhhhccCCCCeEEec-CCCccchhhhhhcC
Q psy7337 84 IQNCDTCLLCEVQLVSNTFYIFP-CGHTFHSHCIVQDL 120 (233)
Q Consensus 84 I~~~~~C~~C~~~L~~~~f~vFp-CgH~FH~~CL~~~~ 120 (233)
+.....|++|...+ ..|.. .+ |||.||..|+..|+
T Consensus 12 ~~~~~~C~IC~~~~-~~p~~-~~~CgH~fC~~Ci~~~~ 47 (74)
T 2yur_A 12 IPDELLCLICKDIM-TDAVV-IPCCGNSYCDECIRTAL 47 (74)
T ss_dssp SCGGGSCSSSCCCC-TTCEE-CSSSCCEECTTHHHHHH
T ss_pred CCCCCCCcCCChHH-hCCeE-cCCCCCHHHHHHHHHHH
Confidence 34456899998877 56655 78 99999999999995
No 29
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.06 E-value=7.1e-07 Score=69.40 Aligned_cols=32 Identities=16% Similarity=0.470 Sum_probs=26.5
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
...|++|...+ ..|. ..||||.||..|+..|+
T Consensus 52 ~~~C~IC~~~~-~~p~-~~~CgH~fC~~Ci~~~~ 83 (124)
T 3fl2_A 52 TFQCICCQELV-FRPI-TTVCQHNVCKDCLDRSF 83 (124)
T ss_dssp HTBCTTTSSBC-SSEE-ECTTSCEEEHHHHHHHH
T ss_pred CCCCCcCChHH-cCcE-EeeCCCcccHHHHHHHH
Confidence 46799999987 5554 45999999999999985
No 30
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=1e-06 Score=63.51 Aligned_cols=45 Identities=20% Similarity=0.595 Sum_probs=35.5
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSHM 153 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~~ 153 (233)
...|++|...+ ..|+ +.+|||.||..|+..|+. . ...||+|+..+
T Consensus 15 ~~~C~IC~~~~-~~p~-~~~CgH~fC~~Ci~~~~~------------------~--~~~CP~Cr~~~ 59 (81)
T 2csy_A 15 PFRCFICRQAF-QNPV-VTKCRHYFCESCALEHFR------------------A--TPRCYICDQPT 59 (81)
T ss_dssp CSBCSSSCSBC-CSEE-ECTTSCEEEHHHHHHHHH------------------H--CSBCSSSCCBC
T ss_pred CCCCcCCCchh-cCee-EccCCCHhHHHHHHHHHH------------------C--CCcCCCcCccc
Confidence 45799999987 5554 589999999999999951 1 36899998743
No 31
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.05 E-value=1.1e-06 Score=60.76 Aligned_cols=46 Identities=26% Similarity=0.622 Sum_probs=34.3
Q ss_pred CCchhhhhh-ccCCCC---eEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChh
Q psy7337 87 CDTCLLCEV-QLVSNT---FYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSH 152 (233)
Q Consensus 87 ~~~C~~C~~-~L~~~~---f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~ 152 (233)
...|++|.. .+ ..| +++.+|||.||..|+..|+. . -...||+|+..
T Consensus 3 ~~~C~IC~~~~~-~~~~~~~~~~~CgH~fC~~Ci~~~~~------------------~-~~~~CP~Cr~~ 52 (65)
T 1g25_A 3 DQGCPRCKTTKY-RNPSLKLMVNVCGHTLCESCVDLLFV------------------R-GAGNCPECGTP 52 (65)
T ss_dssp TTCCSTTTTHHH-HCSSCCEEECTTCCCEEHHHHHHHHH------------------T-TSSSCTTTCCC
T ss_pred CCcCCcCCCCcc-CCCccCeecCCCCCHhHHHHHHHHHH------------------c-CCCcCCCCCCc
Confidence 357999999 54 333 46789999999999998841 0 02589999974
No 32
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.05 E-value=5.5e-07 Score=67.86 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=28.7
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
...|++|...+ ..|..+.+|||.||..|+..|+
T Consensus 22 ~~~C~IC~~~~-~~p~~~~~CgH~FC~~Ci~~~~ 54 (100)
T 3lrq_A 22 VFRCFICMEKL-RDARLCPHCSKLCCFSCIRRWL 54 (100)
T ss_dssp HTBCTTTCSBC-SSEEECTTTCCEEEHHHHHHHH
T ss_pred CCCCccCCccc-cCccccCCCCChhhHHHHHHHH
Confidence 36799999998 6677668999999999999996
No 33
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.04 E-value=2.6e-06 Score=60.88 Aligned_cols=35 Identities=29% Similarity=0.580 Sum_probs=28.7
Q ss_pred ccCCCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 84 IQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 84 I~~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
+.....|++|...+ ..|. +.+|||.||..|+..|+
T Consensus 16 ~~~~~~C~IC~~~~-~~p~-~~~CgH~fC~~Ci~~~~ 50 (85)
T 2ecw_A 16 IKEEVTCPICLELL-KEPV-SADCNHSFCRACITLNY 50 (85)
T ss_dssp CCTTTSCTTTCSCC-SSCE-ECTTSCCBCHHHHHHHH
T ss_pred CccCCCCcCCChhh-Ccce-eCCCCCHHHHHHHHHHH
Confidence 34456899999987 5565 68999999999999985
No 34
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.01 E-value=8.1e-07 Score=69.89 Aligned_cols=45 Identities=31% Similarity=0.654 Sum_probs=0.4
Q ss_pred CCchhhhhhccCCC----------------CeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCC
Q psy7337 87 CDTCLLCEVQLVSN----------------TFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCG 150 (233)
Q Consensus 87 ~~~C~~C~~~L~~~----------------~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG 150 (233)
.+.|++|...+... +.+..+|||.||.+|+..|+.. ...||+|.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--------------------~~~CP~Cr 107 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--------------------RQVCPLDN 107 (117)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--------------------CCcCCCCC
Confidence 36899999998431 2334589999999999999721 36899998
Q ss_pred h
Q psy7337 151 S 151 (233)
Q Consensus 151 ~ 151 (233)
.
T Consensus 108 ~ 108 (117)
T 4a0k_B 108 R 108 (117)
T ss_dssp -
T ss_pred C
Confidence 6
No 35
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.98 E-value=1.1e-06 Score=67.67 Aligned_cols=48 Identities=25% Similarity=0.642 Sum_probs=36.5
Q ss_pred CCCchhhhhhccCC-----CCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChhh
Q psy7337 86 NCDTCLLCEVQLVS-----NTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSHM 153 (233)
Q Consensus 86 ~~~~C~~C~~~L~~-----~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~~ 153 (233)
....|++|...+.. ...++.+|||.||..|+.+|+.. ...||+|+...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--------------------~~~CP~Cr~~~ 58 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--------------------ANTCPTCRKKI 58 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT--------------------CSBCTTTCCBC
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh--------------------CCCCCCCCCcC
Confidence 34679999988732 23488999999999999999621 25899998743
No 36
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.98 E-value=2.5e-06 Score=69.37 Aligned_cols=45 Identities=33% Similarity=0.679 Sum_probs=35.5
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSH 152 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~ 152 (233)
..|++|...+ ..|..+.+|||.||..|+..|+.. -...||+|+..
T Consensus 55 ~~C~IC~~~~-~~p~~~~~CgH~fC~~Ci~~~~~~-------------------~~~~CP~Cr~~ 99 (165)
T 2ckl_B 55 LMCPICLDML-KNTMTTKECLHRFCADCIITALRS-------------------GNKECPTCRKK 99 (165)
T ss_dssp HBCTTTSSBC-SSEEEETTTCCEEEHHHHHHHHHT-------------------TCCBCTTTCCB
T ss_pred CCCcccChHh-hCcCEeCCCCChhHHHHHHHHHHh-------------------CcCCCCCCCCc
Confidence 3799999887 567666699999999999999510 02579999974
No 37
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=2.9e-06 Score=60.62 Aligned_cols=53 Identities=23% Similarity=0.571 Sum_probs=37.0
Q ss_pred ccCCCchhhhhhccCCCCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChh
Q psy7337 84 IQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSH 152 (233)
Q Consensus 84 I~~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~ 152 (233)
+.....|++|...+ ..|. +++|||.||..|+..|+.... ..--...||+|+..
T Consensus 16 ~~~~~~C~IC~~~~-~~p~-~~~CgH~fC~~Ci~~~~~~~~--------------~~~~~~~CP~Cr~~ 68 (85)
T 2ecv_A 16 VKEEVTCPICLELL-TQPL-SLDCGHSFCQACLTANHKKSM--------------LDKGESSCPVCRIS 68 (85)
T ss_dssp CCCCCCCTTTCSCC-SSCB-CCSSSCCBCTTHHHHHHHHHH--------------HTTSCCCCTTTCCS
T ss_pred ccCCCCCCCCCccc-CCce-eCCCCCHHHHHHHHHHHHHhh--------------cCCCCCcCCCCCCc
Confidence 34457899999987 4554 469999999999999851100 00013689999874
No 38
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.91 E-value=4.3e-06 Score=63.98 Aligned_cols=47 Identities=26% Similarity=0.618 Sum_probs=35.9
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChhhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSHMI 154 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~~i 154 (233)
...|++|...+ ..|.. .+|||.||..|+..|+.. -...||+|+....
T Consensus 15 ~~~C~iC~~~~-~~p~~-~~CgH~fC~~Ci~~~~~~-------------------~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 15 ECQCGICMEIL-VEPVT-LPCNHTLCKPCFQSTVEK-------------------ASLCCPFCRRRVS 61 (115)
T ss_dssp HHBCTTTCSBC-SSCEE-CTTSCEECHHHHCCCCCT-------------------TTSBCTTTCCBCH
T ss_pred CCCCccCCccc-CceeE-cCCCCHHhHHHHHHHHhH-------------------CcCCCCCCCcccC
Confidence 45799999887 55654 499999999999999721 0258999997543
No 39
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=6.2e-06 Score=60.42 Aligned_cols=35 Identities=29% Similarity=0.591 Sum_probs=27.8
Q ss_pred CCCchhhhhhccCCCCeEEecCC-----CccchhhhhhcC
Q psy7337 86 NCDTCLLCEVQLVSNTFYIFPCG-----HTFHSHCIVQDL 120 (233)
Q Consensus 86 ~~~~C~~C~~~L~~~~f~vFpCg-----H~FH~~CL~~~~ 120 (233)
....|.+|........-++.||+ |.||..||.+|+
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl 53 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWI 53 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHH
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHH
Confidence 34679999987653334578996 999999999996
No 40
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.88 E-value=6.8e-06 Score=60.23 Aligned_cols=36 Identities=28% Similarity=0.769 Sum_probs=29.0
Q ss_pred cccCCCchhhhhhccCCCCeEEec-CCCccchhhhhhcC
Q psy7337 83 MIQNCDTCLLCEVQLVSNTFYIFP-CGHTFHSHCIVQDL 120 (233)
Q Consensus 83 iI~~~~~C~~C~~~L~~~~f~vFp-CgH~FH~~CL~~~~ 120 (233)
.+.....|++|...+ ..|. +.+ |||.|+..|+..|+
T Consensus 9 ~~~~~~~C~IC~~~~-~~p~-~~~~CgH~fC~~Ci~~~~ 45 (92)
T 3ztg_A 9 PIPDELLCLICKDIM-TDAV-VIPCCGNSYCDECIRTAL 45 (92)
T ss_dssp CCCTTTEETTTTEEC-SSCE-ECTTTCCEECHHHHHHHH
T ss_pred cCCcCCCCCCCChhh-cCce-ECCCCCCHHHHHHHHHHH
Confidence 344567899999887 5665 568 99999999999985
No 41
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.87 E-value=3.2e-06 Score=65.17 Aligned_cols=43 Identities=26% Similarity=0.573 Sum_probs=35.8
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSH 152 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~ 152 (233)
...|++|...+ ..|+...+|||.|+..|+..|+ ...||+|+..
T Consensus 22 ~~~C~IC~~~~-~~pv~~~~CgH~fC~~Ci~~~~----------------------~~~CP~Cr~~ 64 (117)
T 1jm7_B 22 LLRCSRCTNIL-REPVCLGGCEHIFCSNCVSDCI----------------------GTGCPVCYTP 64 (117)
T ss_dssp TTSCSSSCSCC-SSCBCCCSSSCCBCTTTGGGGT----------------------TTBCSSSCCB
T ss_pred CCCCCCCChHh-hCccEeCCCCCHHHHHHHHHHh----------------------cCCCcCCCCc
Confidence 36799999887 6776666999999999999985 1589999974
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.85 E-value=5.7e-06 Score=60.22 Aligned_cols=51 Identities=24% Similarity=0.473 Sum_probs=37.6
Q ss_pred ccCCCchhhhhhccCCCCeEEec--CCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChhh
Q psy7337 84 IQNCDTCLLCEVQLVSNTFYIFP--CGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSHM 153 (233)
Q Consensus 84 I~~~~~C~~C~~~L~~~~f~vFp--CgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~~ 153 (233)
+.....|++|..++...+..++| |||.|+..|+...... -...||.|+...
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-------------------~~~~CP~CR~~~ 60 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-------------------ENGLCPACRKPY 60 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-------------------SCSBCTTTCCBC
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-------------------CCCCCCCCCCcc
Confidence 34456899999998555556666 9999999999876410 136899998743
No 43
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.81 E-value=4.2e-06 Score=56.61 Aligned_cols=40 Identities=28% Similarity=0.717 Sum_probs=32.8
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCCh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGS 151 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~ 151 (233)
...|++|...+ ..| ++.||||.|+..|+..+ ...||+|+.
T Consensus 6 ~~~C~IC~~~~-~~p-~~l~CgH~fC~~Ci~~~-----------------------~~~CP~Cr~ 45 (56)
T 1bor_A 6 FLRCQQCQAEA-KCP-KLLPCLHTLCSGCLEAS-----------------------GMQCPICQA 45 (56)
T ss_dssp CSSCSSSCSSC-BCC-SCSTTSCCSBTTTCSSS-----------------------SSSCSSCCS
T ss_pred CCCceEeCCcc-CCe-EEcCCCCcccHHHHccC-----------------------CCCCCcCCc
Confidence 35799999887 555 66899999999999775 268999986
No 44
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.81 E-value=6e-06 Score=62.37 Aligned_cols=31 Identities=23% Similarity=0.564 Sum_probs=26.0
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
..|++|...+ ..|.. ++|||.||..|+..|+
T Consensus 22 ~~C~IC~~~~-~~p~~-~~CgH~fC~~Ci~~~~ 52 (112)
T 1jm7_A 22 LECPICLELI-KEPVS-TKCDHIFCKFCMLKLL 52 (112)
T ss_dssp TSCSSSCCCC-SSCCB-CTTSCCCCSHHHHHHH
T ss_pred CCCcccChhh-cCeEE-CCCCCHHHHHHHHHHH
Confidence 4799999876 55544 6999999999999985
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.74 E-value=6.1e-06 Score=63.66 Aligned_cols=34 Identities=29% Similarity=0.774 Sum_probs=27.8
Q ss_pred cCCCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 85 QNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 85 ~~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
.....|++|...+ ..| +..+|||.|+..|+..|+
T Consensus 16 ~~~~~C~IC~~~~-~~p-~~~~CgH~fC~~Ci~~~~ 49 (118)
T 3hct_A 16 ESKYECPICLMAL-REA-VQTPCGHRFCKACIIKSI 49 (118)
T ss_dssp CGGGBCTTTCSBC-SSE-EECTTSCEEEHHHHHHHH
T ss_pred CCCCCCCcCChhh-cCe-EECCcCChhhHHHHHHHH
Confidence 3446899999887 556 456999999999999985
No 46
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.73 E-value=9.1e-06 Score=62.47 Aligned_cols=45 Identities=29% Similarity=0.702 Sum_probs=32.7
Q ss_pred CchhhhhhccCC-----CCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChh
Q psy7337 88 DTCLLCEVQLVS-----NTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSH 152 (233)
Q Consensus 88 ~~C~~C~~~L~~-----~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~ 152 (233)
..|++|...+.. ...+..+|||.||..|+..|+. . ...||+|+..
T Consensus 73 ~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~------------------~--~~~CP~Cr~~ 122 (133)
T 4ap4_A 73 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK------------------N--ANTCPTCRKK 122 (133)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHH------------------H--CSBCTTTCCB
T ss_pred CCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHH------------------c--CCCCCCCCCc
Confidence 457777665521 2347889999999999999951 1 3799999873
No 47
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.69 E-value=2.5e-05 Score=56.68 Aligned_cols=35 Identities=20% Similarity=0.509 Sum_probs=27.1
Q ss_pred cCCCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 85 QNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 85 ~~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
+....|++|...+.. ....-.|+|.||.+|+..|+
T Consensus 13 ~~i~~C~IC~~~i~~-g~~C~~C~h~fH~~Ci~kWl 47 (74)
T 2ct0_A 13 DAVKICNICHSLLIQ-GQSCETCGIRMHLPCVAKYF 47 (74)
T ss_dssp SSSCBCSSSCCBCSS-SEECSSSCCEECHHHHHHHS
T ss_pred CCCCcCcchhhHccc-CCccCCCCchhhHHHHHHHH
Confidence 344689999999853 22222799999999999997
No 48
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.63 E-value=2.1e-05 Score=60.13 Aligned_cols=45 Identities=29% Similarity=0.637 Sum_probs=34.9
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSH 152 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~ 152 (233)
...|++|...+ ..|.. .+|||.||..|+..|+. . -...||+|+..
T Consensus 23 ~~~C~IC~~~~-~~p~~-~~CgH~fC~~Ci~~~~~------------------~-~~~~CP~Cr~~ 67 (116)
T 1rmd_A 23 SISCQICEHIL-ADPVE-TSCKHLFCRICILRCLK------------------V-MGSYCPSCRYP 67 (116)
T ss_dssp HTBCTTTCSBC-SSEEE-CTTSCEEEHHHHHHHHH------------------H-TCSBCTTTCCB
T ss_pred CCCCCCCCcHh-cCcEE-cCCCCcccHHHHHHHHh------------------H-CcCcCCCCCCC
Confidence 35799999887 55655 79999999999999851 0 02589999874
No 49
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.58 E-value=2.6e-05 Score=63.09 Aligned_cols=32 Identities=16% Similarity=0.434 Sum_probs=26.8
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
...|++|...+ ..|.. .+|||.||..|+..|+
T Consensus 78 ~~~C~IC~~~~-~~pv~-~~CgH~fC~~Ci~~~~ 109 (150)
T 1z6u_A 78 SFMCVCCQELV-YQPVT-TECFHNVCKDCLQRSF 109 (150)
T ss_dssp HTBCTTTSSBC-SSEEE-CTTSCEEEHHHHHHHH
T ss_pred CCEeecCChhh-cCCEE-cCCCCchhHHHHHHHH
Confidence 35799999886 55655 7999999999999985
No 50
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.58 E-value=6.6e-05 Score=63.01 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=31.7
Q ss_pred cccccCCCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 81 YHMIQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 81 ~~iI~~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
...+.....|++|+..+ ..|++. ||||+|-..|+..|+
T Consensus 100 ~~~ip~~f~CPI~~elm-~DPV~~-~~Ghtfer~~I~~~l 137 (179)
T 2f42_A 100 KREIPDYLCGKISFELM-REPCIT-PSGITYDRKDIEEHL 137 (179)
T ss_dssp CCCCCGGGBCTTTCSBC-SSEEEC-TTSCEEEHHHHHHHH
T ss_pred ccCCcHhhcccCccccC-CCCeEC-CCCCEECHHHHHHHH
Confidence 44556667899999987 777776 999999999999995
No 51
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.44 E-value=3.5e-05 Score=54.88 Aligned_cols=41 Identities=24% Similarity=0.634 Sum_probs=33.0
Q ss_pred CchhhhhhccCCCCeEEecCCCc-cchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChhhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHT-FHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSHMI 154 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~-FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~~i 154 (233)
..|.+|...+ ...+..||||. |+..|+..+ ..||+|...+.
T Consensus 25 ~~C~iC~~~~--~~~~~~pCgH~~~C~~C~~~~------------------------~~CP~Cr~~i~ 66 (74)
T 4ic3_A 25 KLCKICMDRN--IAIVFVPCGHLVTCKQCAEAV------------------------DKCPMCYTVIT 66 (74)
T ss_dssp TBCTTTSSSB--CCEEEETTCCBCCCHHHHTTC------------------------SBCTTTCCBCS
T ss_pred CCCCCCCCCC--CCEEEcCCCChhHHHHhhhcC------------------------ccCCCcCcCcc
Confidence 5799999875 33456699999 999999876 58999987543
No 52
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.29 E-value=0.00045 Score=63.20 Aligned_cols=45 Identities=27% Similarity=0.610 Sum_probs=34.8
Q ss_pred CCchhhhhhccCCCCeEEecCCCc-cchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChhhhhhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHT-FHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSHMIEKE 157 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~-FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~~i~~I 157 (233)
...|.+|.... .. .+..||||. |...|+..+ ..||+|+..+-..+
T Consensus 295 ~~~C~IC~~~~-~~-~v~lpCgH~~fC~~C~~~~------------------------~~CP~CR~~i~~~~ 340 (345)
T 3t6p_A 295 ERTCKVCMDKE-VS-VVFIPCGHLVVCQECAPSL------------------------RKCPICRGIIKGTV 340 (345)
T ss_dssp TCBCTTTSSSB-CC-EEEETTCCEEECTTTGGGC------------------------SBCTTTCCBCCEEE
T ss_pred CCCCCccCCcC-Cc-eEEcCCCChhHhHHHHhcC------------------------CcCCCCCCCccCeE
Confidence 46799999986 33 445599999 999999776 58999998654443
No 53
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.24 E-value=0.00037 Score=59.70 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=29.7
Q ss_pred ccccCCCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 82 HMIQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 82 ~iI~~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
..+.....|++|...+ ..|+ +.||||+|-..|+..|+
T Consensus 203 ~~~~~~~~c~i~~~~~-~dPv-~~~~gh~f~~~~i~~~~ 239 (281)
T 2c2l_A 203 RDIPDYLCGKISFELM-REPC-ITPSGITYDRKDIEEHL 239 (281)
T ss_dssp CCCCSTTBCTTTCSBC-SSEE-ECSSCCEEETTHHHHHH
T ss_pred CCCCcccCCcCcCCHh-cCCe-ECCCCCEECHHHHHHHH
Confidence 3444557899999987 6665 47899999999999985
No 54
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.21 E-value=4.1e-05 Score=61.37 Aligned_cols=35 Identities=26% Similarity=0.602 Sum_probs=28.9
Q ss_pred ccCCCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 84 IQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 84 I~~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
+...-.|++|...+ ..| +..+|||.|+..|+..|+
T Consensus 28 l~~~~~C~IC~~~~-~~p-v~~~CgH~FC~~Ci~~~~ 62 (141)
T 3knv_A 28 LEAKYLCSACRNVL-RRP-FQAQCGHRYCSFCLASIL 62 (141)
T ss_dssp CCGGGBCTTTCSBC-SSE-EECTTSCEEEHHHHHHHG
T ss_pred CCcCcCCCCCChhh-cCc-EECCCCCccCHHHHHHHH
Confidence 34456899999987 666 446999999999999996
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.18 E-value=0.00021 Score=66.57 Aligned_cols=45 Identities=24% Similarity=0.713 Sum_probs=35.0
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSHM 153 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~~ 153 (233)
..|++|.... ...+..||||.||..|+..|+. . -...||+|+...
T Consensus 333 ~~C~ICle~~--~~pv~lpCGH~FC~~Ci~~wl~------------------~-~~~~CP~CR~~i 377 (389)
T 2y1n_A 333 QLCKICAEND--KDVKIEPCGHLMCTSCLTSWQE------------------S-EGQGCPFCRCEI 377 (389)
T ss_dssp SBCTTTSSSB--CCEEEETTCCEECHHHHHHHHH------------------H-TCSBCTTTCCBC
T ss_pred CCCCccCcCC--CCeEEeCCCChhhHHHHHHHHh------------------c-CCCCCCCCCCcc
Confidence 5799998876 3357789999999999998851 0 136899998743
No 56
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.18 E-value=6.1e-05 Score=69.41 Aligned_cols=61 Identities=15% Similarity=0.316 Sum_probs=39.5
Q ss_pred CCchhhhhhccCC---CCeEE---ecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChhhhhh
Q psy7337 87 CDTCLLCEVQLVS---NTFYI---FPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSHMIEK 156 (233)
Q Consensus 87 ~~~C~~C~~~L~~---~~f~v---FpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~~i~~ 156 (233)
...|++|-..+.. .|-.+ -+|||.||..||.+|+......| ..-+++...||+|+..+..+
T Consensus 308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sR---------qSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGK---------TFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSS---------CTTTCCEEECTTTCCEEEGG
T ss_pred CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCcc---------ccccccCCCCCCCCCcCCcc
Confidence 3469999988765 23222 36999999999999971110001 11345568999999865443
No 57
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.15 E-value=0.00011 Score=52.26 Aligned_cols=40 Identities=25% Similarity=0.663 Sum_probs=31.0
Q ss_pred CchhhhhhccCCCCeEEecCCCc-cchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHT-FHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSHM 153 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~-FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~~ 153 (233)
..|.+|.... . ..+..||||. |...|+... ..||+|+..+
T Consensus 26 ~~C~IC~~~~-~-~~~~~pCgH~~~C~~C~~~~------------------------~~CP~Cr~~i 66 (75)
T 2ecg_A 26 KLCKICMDRN-I-AIVFVPCGHLVTCKQCAEAV------------------------DKCPMCYTVI 66 (75)
T ss_dssp HSCSSSCSSC-C-CBCCSSSCCCCBCHHHHHHC------------------------SBCTTTCCBC
T ss_pred CCCCcCCCCC-C-CEEEecCCCHHHHHHHhhCC------------------------CCCccCCcee
Confidence 4699998875 3 3445799999 999999543 6899998754
No 58
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.09 E-value=8e-05 Score=53.97 Aligned_cols=44 Identities=30% Similarity=0.640 Sum_probs=34.5
Q ss_pred CchhhhhhccCCCCeEEecCCCc-cchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChhhhhhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHT-FHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSHMIEKE 157 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~-FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~~i~~I 157 (233)
..|.+|.... ...+..||||. |-..|+..+ ..||+|...+...+
T Consensus 19 ~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~~------------------------~~CP~Cr~~i~~~~ 63 (79)
T 2yho_A 19 MLCMVCCEEE--INSTFCPCGHTVCCESCAAQL------------------------QSCPVCRSRVEHVQ 63 (79)
T ss_dssp TBCTTTSSSB--CCEEEETTCBCCBCHHHHTTC------------------------SBCTTTCCBCCEEE
T ss_pred CEeEEeCccc--CcEEEECCCCHHHHHHHHHhc------------------------CcCCCCCchhhCeE
Confidence 5799998874 44677799999 999999766 49999998655443
No 59
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=97.04 E-value=0.00026 Score=53.37 Aligned_cols=48 Identities=13% Similarity=0.094 Sum_probs=37.6
Q ss_pred cccCCCchhhhhhccCCCCeEEecCC-CccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChh
Q psy7337 83 MIQNCDTCLLCEVQLVSNTFYIFPCG-HTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSH 152 (233)
Q Consensus 83 iI~~~~~C~~C~~~L~~~~f~vFpCg-H~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~ 152 (233)
.+.....|++|...+ ..|++ .+|| |.|-+.|+..|+. . ...||+||..
T Consensus 18 ~~p~~~~CpI~~~~m-~dPV~-~~cG~htf~r~cI~~~l~------------------~--~~~cP~~~~~ 66 (98)
T 1wgm_A 18 DACDEFLDPIMSTLM-CDPVV-LPSSRVTVDRSTIARHLL------------------S--DQTDPFNRSP 66 (98)
T ss_dssp SCCTTTBCTTTCSBC-SSEEE-CTTTCCEEEHHHHHHHTT------------------T--SCBCTTTCSB
T ss_pred cCcHhcCCcCccccc-cCCeE-CCCCCeEECHHHHHHHHH------------------h--CCCCCCCCCC
Confidence 344557899999886 77765 5999 9999999999962 1 2589999963
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=96.80 E-value=0.00048 Score=55.87 Aligned_cols=34 Identities=29% Similarity=0.788 Sum_probs=28.0
Q ss_pred cCCCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 85 QNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 85 ~~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
...-.|++|...+ ..|+. .+|||.|...|+..|+
T Consensus 16 ~~~~~C~IC~~~~-~~pv~-~~CgH~fC~~Ci~~~~ 49 (170)
T 3hcs_A 16 ESKYECPICLMAL-REAVQ-TPCGHRFCKACIIKSI 49 (170)
T ss_dssp CGGGBCTTTCSBC-SSEEE-CTTSCEEEHHHHHHHH
T ss_pred CCCCCCCCCChhh-cCcEE-CCCCCHHHHHHHHHHH
Confidence 3346799999987 56644 6999999999999985
No 61
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.78 E-value=0.00014 Score=50.25 Aligned_cols=48 Identities=23% Similarity=0.422 Sum_probs=34.1
Q ss_pred CCchhhhhhccCCCCeEEecCCCc-cchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChhhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHT-FHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSHMI 154 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~-FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~~i 154 (233)
...|.+|.....+.-+++.||||. |-..|+..+. . ....||+|+..+-
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~-------------------~-~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLK-------------------K-AGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHH-------------------H-TTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHH-------------------H-hCCcCCCcCchhh
Confidence 357999998753333444599998 9999998762 0 1368999997543
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.70 E-value=0.00072 Score=47.54 Aligned_cols=43 Identities=26% Similarity=0.768 Sum_probs=33.6
Q ss_pred CCchhhhhhccCCCCeEEecCCCc-cchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChhhhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHT-FHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSHMIE 155 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~-FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~~i~ 155 (233)
...|.+|.... ...++.||||. |...|+... ..||+|...+..
T Consensus 15 ~~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~~------------------------~~CP~CR~~i~~ 58 (68)
T 2ea5_A 15 SKDCVVCQNGT--VNWVLLPCRHTCLCDGCVKYF------------------------QQCPMCRQFVQE 58 (68)
T ss_dssp SSCCSSSSSSC--CCCEETTTTBCCSCTTHHHHC------------------------SSCTTTCCCCCC
T ss_pred CCCCCCcCcCC--CCEEEECCCChhhhHHHHhcC------------------------CCCCCCCcchhc
Confidence 46799998763 45677899999 999998642 699999885544
No 63
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.68 E-value=0.00058 Score=51.59 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=37.3
Q ss_pred cccCCCchhhhhhccCCCCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChh
Q psy7337 83 MIQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSH 152 (233)
Q Consensus 83 iI~~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~ 152 (233)
.+.....|++|+..+ ..|++ .+|||+|-+.|+..|+.. ...||+||..
T Consensus 25 ~~p~~~~CpI~~~~m-~dPV~-~~cGhtf~r~~I~~~l~~--------------------~~~cP~~~~~ 72 (100)
T 2kre_A 25 DAPDEFRDPLMDTLM-TDPVR-LPSGTIMDRSIILRHLLN--------------------SPTDPFNRQT 72 (100)
T ss_dssp SCSTTTBCTTTCSBC-SSEEE-ETTTEEEEHHHHHHHTTS--------------------CSBCSSSCCB
T ss_pred cCcHhhCCcCccCcc-cCCeE-CCCCCEEchHHHHHHHHc--------------------CCCCCCCCCC
Confidence 344557899999886 66765 579999999999999621 2689999973
No 64
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.53 E-value=0.0012 Score=48.22 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=36.8
Q ss_pred ccCCCchhhhhhccCCCCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChh
Q psy7337 84 IQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSH 152 (233)
Q Consensus 84 I~~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~ 152 (233)
+.....|++|+..+ ..|++ .+|||+|-+.|+..|+ .. ...||+||..
T Consensus 11 ~p~~~~CpI~~~~m-~dPV~-~~cGhtf~r~~I~~~l------------------~~--~~~cP~~~~~ 57 (85)
T 2kr4_A 11 APDEFRDPLMDTLM-TDPVR-LPSGTVMDRSIILRHL------------------LN--SPTDPFNRQM 57 (85)
T ss_dssp CCTTTBCTTTCSBC-SSEEE-CTTSCEEEHHHHHHHH------------------HH--CSBCTTTCCB
T ss_pred CchheECcccCchh-cCCeE-CCCCCEECHHHHHHHH------------------hc--CCCCCCCcCC
Confidence 44557899999987 66655 5799999999999995 11 2689999973
No 65
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.50 E-value=0.0015 Score=45.09 Aligned_cols=45 Identities=27% Similarity=0.629 Sum_probs=33.1
Q ss_pred CCchhhhhhccCCCCeEEecCC--C---ccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCCh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCG--H---TFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGS 151 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCg--H---~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~ 151 (233)
...|.+|.... +.++ +.||. | .||..||..|+.. --...||+|+.
T Consensus 6 ~~~CrIC~~~~-~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~------------------~~~~~C~~C~~ 55 (60)
T 1vyx_A 6 VPVCWICNEEL-GNER-FRACGCTGELENVHRSCLSTWLTI------------------SRNTACQICGV 55 (60)
T ss_dssp CCEETTTTEEC-SCCC-CCSCCCSSGGGSCCHHHHHHHHHH------------------HTCSBCTTTCC
T ss_pred CCEeEEeecCC-CCce-ecCcCCCCchhhhHHHHHHHHHHh------------------CCCCccCCCCC
Confidence 45799998874 5555 68955 4 9999999999621 01368999986
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.40 E-value=0.00082 Score=49.48 Aligned_cols=33 Identities=21% Similarity=0.467 Sum_probs=27.2
Q ss_pred CchhhhhhccCCCCeEEe-cCCCccchhhhhhcC
Q psy7337 88 DTCLLCEVQLVSNTFYIF-PCGHTFHSHCIVQDL 120 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vF-pCgH~FH~~CL~~~~ 120 (233)
..|++|...+....++.+ +|||.|...|+..++
T Consensus 6 ~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~ 39 (94)
T 1wim_A 6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYV 39 (94)
T ss_dssp CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHH
T ss_pred cCCcccCcccccccceEcCCCCCcccHHHHHHHH
Confidence 579999998755556666 699999999999886
No 67
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=96.33 E-value=0.00057 Score=47.33 Aligned_cols=49 Identities=16% Similarity=0.380 Sum_probs=33.3
Q ss_pred CCCchhhhhhccCCCCeEEecCCCc-cchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChhhh
Q psy7337 86 NCDTCLLCEVQLVSNTFYIFPCGHT-FHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSHMI 154 (233)
Q Consensus 86 ~~~~C~~C~~~L~~~~f~vFpCgH~-FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~~i 154 (233)
.+..|.+|.....+.-|++.||||. |-..|+..+.. ....||+|+..+.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~--------------------~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKK--------------------RNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHH--------------------TTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHH--------------------cCCcCCCcCcchh
Confidence 3467999998753222222399999 67999987730 1368999997543
No 68
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.28 E-value=0.0021 Score=47.65 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=28.1
Q ss_pred CCCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 86 NCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 86 ~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
....|++|...+ ..|++.=.|||.|-+.|+..|+
T Consensus 6 ~~~~CPI~~~~~-~dPV~~~~cGh~f~r~cI~~~l 39 (94)
T 2yu4_A 6 SGFTCPITKEEM-KKPVKNKVCGHTYEEDAIVRMI 39 (94)
T ss_dssp SCCBCTTTCSBC-SSEEEESSSCCEEEHHHHHHHH
T ss_pred cEeECcCcCchh-cCCEEcCCCCCeecHHHHHHHH
Confidence 346799999887 6777654599999999999996
No 69
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.69 E-value=0.0097 Score=51.62 Aligned_cols=45 Identities=22% Similarity=0.600 Sum_probs=32.7
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCCh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGS 151 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~ 151 (233)
..|.+|...+. .....=.|+|.||..|+..|+.. --...||.||.
T Consensus 181 ~~C~iC~~iv~-~g~~C~~C~~~~H~~C~~~~~~~------------------~~~~~CP~C~~ 225 (238)
T 3nw0_A 181 KICNICHSLLI-QGQSCETCGIRMHLPCVAKYFQS------------------NAEPRCPHCND 225 (238)
T ss_dssp CBCTTTCSBCS-SCEECSSSCCEECHHHHHHHTTT------------------CSSCBCTTTCC
T ss_pred CcCcchhhHHh-CCcccCccChHHHHHHHHHHHHh------------------CCCCCCCCCCC
Confidence 56999999985 22222239999999999998611 00258999997
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=95.40 E-value=0.0049 Score=54.64 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=29.3
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
..|++|...+ ..|+..-.|||+|-+.|+..|+
T Consensus 182 l~CPIcl~~f-~DPVts~~CGHsFcR~cI~~~~ 213 (267)
T 3htk_C 182 LTCPITCKPY-EAPLISRKCNHVFDRDGIQNYL 213 (267)
T ss_dssp SBCTTTSSBC-SSEEEESSSCCEEEHHHHHHHS
T ss_pred eECcCccCcc-cCCeeeCCCCCcccHHHHHHHH
Confidence 4799999998 8999888999999999999986
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=95.28 E-value=0.0065 Score=46.48 Aligned_cols=45 Identities=22% Similarity=0.536 Sum_probs=34.2
Q ss_pred chhhhhhccCCCCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChhh
Q psy7337 89 TCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSHM 153 (233)
Q Consensus 89 ~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~~ 153 (233)
-|+.|+.|+ .----+.||+|+|--+|...+. .--.+.||.|.+.+
T Consensus 3 fC~~C~~Pi-~iygRmIPCkHvFCydCa~~~~-------------------~~~~k~Cp~C~~~V 47 (101)
T 3vk6_A 3 FCDKCGLPI-KVYGRMIPCKHVFCYDCAILHE-------------------KKGDKMCPGCSDPV 47 (101)
T ss_dssp BCTTTCSBC-SEEEEEETTCCEEEHHHHHHHH-------------------HTTCCBCTTTCCBC
T ss_pred ecCccCCCe-EEEeeeccccccHHHHHHHHHH-------------------hccCCCCcCcCCee
Confidence 389999998 4555688999999999998763 00036899998844
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=94.45 E-value=0.0081 Score=41.33 Aligned_cols=32 Identities=9% Similarity=0.037 Sum_probs=27.2
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
..|++|++.+ ..|++.-+|||.|-+.|+.+|+
T Consensus 4 ~~CpIs~~~m-~dPV~~~~sG~~yer~~I~~~l 35 (61)
T 2bay_A 4 MLCAISGKVP-RRPVLSPKSRTIFEKSLLEQYV 35 (61)
T ss_dssp CCCTTTCSCC-SSEEEETTTTEEEEHHHHHHHH
T ss_pred EEecCCCCCC-CCCEEeCCCCcEEcHHHHHHHH
Confidence 4699999998 6775544899999999999996
No 73
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=94.29 E-value=0.11 Score=39.30 Aligned_cols=48 Identities=10% Similarity=0.280 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCchhhhhhcc
Q psy7337 44 ASLEQYNQHIVDLKEDMSEATRSAEQVRNDIQACANRYHMIQNCDTCLLCEVQL 97 (233)
Q Consensus 44 ~sL~ey~~~Ie~lk~eie~~~~~~~~l~~el~~l~~r~~iI~~~~~C~~C~~~L 97 (233)
+.++++..++..++..+..+......+...+..+.. ++..|++||.++
T Consensus 10 ~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~------~g~~CPvCgs~l 57 (112)
T 1l8d_A 10 TKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK------AKGKCPVCGREL 57 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------CSEECTTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------CCCCCCCCCCcC
Confidence 355677777777777777777777777777766644 257899999998
No 74
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=88.69 E-value=0.085 Score=31.46 Aligned_cols=29 Identities=14% Similarity=0.290 Sum_probs=22.1
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
+..|+.|++++....-+.. =|..||..|+
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~~-~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVNC-LDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCCS-SSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEEE-CCeEecccCC
Confidence 4689999999865444443 4899999995
No 75
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=88.03 E-value=0.08 Score=35.05 Aligned_cols=20 Identities=35% Similarity=0.660 Sum_probs=16.2
Q ss_pred hCCCCCCChhhhhhhhccCC
Q psy7337 143 SRECPYCGSHMIEKESKKEG 162 (233)
Q Consensus 143 a~eCPlCG~~~i~~Id~pf~ 162 (233)
+-.||+||..++..+..|.+
T Consensus 23 ~IrCpyCGyrii~KvR~p~v 42 (48)
T 4ayb_P 23 GVRCPYCGYKIIFMVRKPTI 42 (48)
T ss_dssp SSCCTTTCCSCEECCCCCSC
T ss_pred CcccCccCcEEEEEecCCcc
Confidence 57999999988887777653
No 76
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=85.68 E-value=5.7 Score=30.68 Aligned_cols=34 Identities=18% Similarity=0.530 Sum_probs=25.0
Q ss_pred CCchhhhhhccC--CCCeEEecCCCccchhhhhhcC
Q psy7337 87 CDTCLLCEVQLV--SNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 87 ~~~C~~C~~~L~--~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
...|..|+.++. .+...--.||++|-..|....+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~ 104 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNA 104 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCcc
Confidence 357999999853 2344455699999999987654
No 77
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=84.07 E-value=2.9 Score=35.85 Aligned_cols=12 Identities=42% Similarity=1.171 Sum_probs=9.8
Q ss_pred CCCCCCChhhhh
Q psy7337 144 RECPYCGSHMIE 155 (233)
Q Consensus 144 ~eCPlCG~~~i~ 155 (233)
-.||.||.+.+.
T Consensus 223 v~Cp~CgRIL~~ 234 (256)
T 3na7_A 223 ITCPYCGRILYA 234 (256)
T ss_dssp EECTTTCCEEEC
T ss_pred EECCCCCeeEEe
Confidence 489999997764
No 78
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=83.78 E-value=0.38 Score=32.47 Aligned_cols=31 Identities=19% Similarity=0.477 Sum_probs=25.9
Q ss_pred CCCchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 86 NCDTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 86 ~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
....|+.|+++|.....++-.=|..||..|+
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~~~~~H~~CF 40 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSNGELYHEQCF 40 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEETTEEEETTTS
T ss_pred CCccchhcCccccCCceEEEeCcCeeCcCCC
Confidence 4578999999997777666677999999997
No 79
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.93 E-value=0.43 Score=32.45 Aligned_cols=30 Identities=23% Similarity=0.548 Sum_probs=24.7
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
...|+.|+++|.....++-.-|..||..|+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF 34 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHCF 34 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTTC
T ss_pred CCCCccCCCccccCccEEEECccccCcccC
Confidence 368999999997655666677999999997
No 80
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=82.79 E-value=0.38 Score=32.79 Aligned_cols=30 Identities=20% Similarity=0.424 Sum_probs=24.6
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
...|+.|+++|.....++-.=|..||..|+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF 34 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGCF 34 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECSSSEECTTTC
T ss_pred CCCCccCCCccCCCceEEEECCCeEcccCC
Confidence 368999999997655666667999999997
No 81
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=81.40 E-value=0.46 Score=32.33 Aligned_cols=30 Identities=20% Similarity=0.474 Sum_probs=24.5
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
...|+.|+++|.....++-.=|..||..|+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF 34 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYKGSSWHETCF 34 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEETTEEEETTTT
T ss_pred CCCCccCCCcccCCceEEEECcCeecccCC
Confidence 358999999997665566667999999997
No 82
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=81.14 E-value=0.59 Score=31.89 Aligned_cols=30 Identities=23% Similarity=0.463 Sum_probs=23.6
Q ss_pred CCchhhhhhccCC--CCeEEecCCCccchhhh
Q psy7337 87 CDTCLLCEVQLVS--NTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 87 ~~~C~~C~~~L~~--~~f~vFpCgH~FH~~CL 116 (233)
...|+.|+++|.. ...++-.-|..||.+|+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF 36 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCF 36 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTTC
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCcccC
Confidence 3689999999975 34455557999999997
No 83
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.55 E-value=0.8 Score=32.34 Aligned_cols=33 Identities=15% Similarity=0.414 Sum_probs=24.7
Q ss_pred cccCCCchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 83 MIQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 83 iI~~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
.+.....|..|+++|....++ ..=|..||.+|+
T Consensus 11 ~~~~~~~C~~C~~~I~~~~~v-~a~~~~wH~~CF 43 (80)
T 2dj7_A 11 KIRGPSHCAGCKEEIKHGQSL-LALDKQWHVSCF 43 (80)
T ss_dssp CCSSCSCCTTTCCCCSSSCCE-EETTEEECTTTC
T ss_pred CCCCCCCCcCcCCeeCCCeEE-EECCcccccccC
Confidence 344457899999999655544 345899999997
No 84
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=79.22 E-value=0.43 Score=32.89 Aligned_cols=30 Identities=20% Similarity=0.496 Sum_probs=24.7
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
...|+.|++++.....++-.-|..||..|+
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF 40 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSNGELYHEQCF 40 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEETTEEECTTTC
T ss_pred CCCchhcCCccCCCceEEEeCccEeccccC
Confidence 468999999997656666667999999997
No 85
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=78.76 E-value=0.77 Score=31.73 Aligned_cols=29 Identities=21% Similarity=0.551 Sum_probs=23.2
Q ss_pred CchhhhhhccCC--CCeEEecCCCccchhhh
Q psy7337 88 DTCLLCEVQLVS--NTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 88 ~~C~~C~~~L~~--~~f~vFpCgH~FH~~CL 116 (233)
..|+.|+++|.. ...++-.-|..||.+|+
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF 36 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECF 36 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGC
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccC
Confidence 589999999975 34455567999999997
No 86
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=78.23 E-value=1 Score=31.28 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=23.2
Q ss_pred CCCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 86 NCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 86 ~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
+...|.+|++. +.-+.-=.|..+||..||.-.+
T Consensus 11 ~~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l 43 (66)
T 2lri_C 11 PGARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAG 43 (66)
T ss_dssp TTCCCTTTSCC--TTCEECSSSCCEECHHHHCTTT
T ss_pred CCCCcCCCCCC--CeEEECCCCCCceecccCCCcc
Confidence 45789999975 3322333499999999997554
No 87
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=76.66 E-value=0.87 Score=31.75 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=23.1
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
...|+.|+++|... ++..-+..||..|+
T Consensus 15 ~~~C~~C~~~I~~~--~~~a~~~~~H~~CF 42 (79)
T 1x62_A 15 LPMCDKCGTGIVGV--FVKLRDRHRHPECY 42 (79)
T ss_dssp CCCCSSSCCCCCSS--CEECSSCEECTTTT
T ss_pred CCccccCCCCccCc--EEEECcceeCcCcC
Confidence 46899999999763 56667999999997
No 88
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=75.68 E-value=16 Score=29.33 Aligned_cols=32 Identities=16% Similarity=0.300 Sum_probs=24.7
Q ss_pred CCCchhhhhhcc---CCCCeEEecCCCccchhhhh
Q psy7337 86 NCDTCLLCEVQL---VSNTFYIFPCGHTFHSHCIV 117 (233)
Q Consensus 86 ~~~~C~~C~~~L---~~~~f~vFpCgH~FH~~CL~ 117 (233)
....|.+|+.++ .+.......|+|.+-+.|-.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~ 101 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH 101 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc
Confidence 347899999985 35566677799999888873
No 89
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=75.51 E-value=14 Score=26.80 Aligned_cols=60 Identities=13% Similarity=0.193 Sum_probs=37.3
Q ss_pred CCChhhhhhcCCC---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7337 19 LISIEDILPFFSD---FTCMDQFKHAICASLEQYNQHIVDLKEDMSEATRSAEQVRNDIQACAN 79 (233)
Q Consensus 19 ~L~ieDLLp~fpd---~v~I~~fKd~I~~sL~ey~~~Ie~lk~eie~~~~~~~~l~~el~~l~~ 79 (233)
...+-+++|.+++ ...+..++.+| +++..-..+...+..+++........++.+|+.|++
T Consensus 25 f~~Lr~~vP~~~~~~K~sK~~iL~~A~-~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 25 FFALRDQIPELENNEKAPKVVILKKAT-AYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHTTCGGGTTCTTCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456788888864 34455666554 344444444555556666667777777777777753
No 90
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.50 E-value=1.1 Score=31.17 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=24.4
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
...|+.|+++|.....++-.=|..||..|+
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF 44 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDCF 44 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTTC
T ss_pred CCcCccCCcccccCceEEEECccccccccC
Confidence 368999999997655556667999999997
No 91
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=74.70 E-value=0.75 Score=31.75 Aligned_cols=28 Identities=18% Similarity=0.441 Sum_probs=19.7
Q ss_pred chhhhhhccCCCCeEEecCCCccchhhhh
Q psy7337 89 TCLLCEVQLVSNTFYIFPCGHTFHSHCIV 117 (233)
Q Consensus 89 ~C~~C~~~L~~~~f~vFpCgH~FH~~CL~ 117 (233)
.|+.|+++|....++... |..||..|+.
T Consensus 2 ~C~~C~~~I~~~~~v~a~-~~~~H~~CF~ 29 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSL-GKDWHRPCLK 29 (76)
T ss_dssp BCTTTSSBCCGGGEEEET-TEEEETTTCB
T ss_pred cCCCCCCEEECceEEEEC-CccccCCCCC
Confidence 588888888645554433 8888888874
No 92
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=74.67 E-value=0.86 Score=31.38 Aligned_cols=29 Identities=17% Similarity=0.488 Sum_probs=23.5
Q ss_pred CchhhhhhccCC---CCeEEecCCCccchhhh
Q psy7337 88 DTCLLCEVQLVS---NTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 88 ~~C~~C~~~L~~---~~f~vFpCgH~FH~~CL 116 (233)
.+|+.|+++|.. ...++-.=|..||..|+
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF 47 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYCF 47 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTTC
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCcccC
Confidence 689999999975 44555556999999997
No 93
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.39 E-value=1.7 Score=31.06 Aligned_cols=31 Identities=19% Similarity=0.458 Sum_probs=24.9
Q ss_pred CCCchhhhhhccCCCCeEEecCCCccchhhhh
Q psy7337 86 NCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIV 117 (233)
Q Consensus 86 ~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~ 117 (233)
....|+.|+++|.....+ -.-|..||..|+.
T Consensus 14 ~~~~C~~C~~~I~~~~~v-~a~~~~~H~~CF~ 44 (91)
T 2d8y_A 14 ARETCVECQKTVYPMERL-LANQQVFHISCFR 44 (91)
T ss_dssp SSCBCTTTCCBCCTTSEE-ECSSSEEETTTCB
T ss_pred CCCcCccCCCccCCceeE-EECCCEECCCCCe
Confidence 457899999999765554 5679999999974
No 94
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.13 E-value=1.1 Score=30.77 Aligned_cols=29 Identities=17% Similarity=0.484 Sum_probs=23.4
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
...|+.|+++|....++. .-|..||..|+
T Consensus 9 ~~~C~~C~~~I~~~~~v~-a~~~~~H~~CF 37 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVS-SLGKDWHKFCL 37 (76)
T ss_dssp CCBCTTTCCBCCTTTEEE-ETTEEEETTTC
T ss_pred CCCCcCCCCEeECCeEEE-ECCeEeeCCCC
Confidence 368999999997566544 56999999997
No 95
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=71.80 E-value=1.3 Score=29.53 Aligned_cols=28 Identities=14% Similarity=0.354 Sum_probs=22.6
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
...|+.|+++|. .. ++..=|..||..|+
T Consensus 5 ~~~C~~C~~~I~-~~-~~~a~~~~~H~~CF 32 (66)
T 1nyp_A 5 VPICGACRRPIE-GR-VVNAMGKQWHVEHF 32 (66)
T ss_dssp CCEETTTTEECC-SC-EECCTTSBEETTTC
T ss_pred CCCCcccCCEec-ce-EEEECccccccCcC
Confidence 368999999996 33 46667999999997
No 96
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=71.61 E-value=4.7 Score=31.74 Aligned_cols=73 Identities=16% Similarity=0.307 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCchhhhhhcc-C--CCCeEEecCCCccchhh
Q psy7337 39 KHAICASLEQYNQHIVDLKEDMSEATRSAEQVRNDIQACANRYHMIQNCDTCLLCEVQL-V--SNTFYIFPCGHTFHSHC 115 (233)
Q Consensus 39 Kd~I~~sL~ey~~~Ie~lk~eie~~~~~~~~l~~el~~l~~r~~iI~~~~~C~~C~~~L-~--~~~f~vFpCgH~FH~~C 115 (233)
++.|..-|..+...-..-++-| ..++.++++++.+..- .....|.+|+.++ + +....-..|+|.+-+.|
T Consensus 15 ~~~Il~Vl~Rd~~l~~~E~~ri-------~kL~~~l~~~k~~~~~-~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C 86 (134)
T 1zbd_B 15 KEIINRVIARAEKMETMEQERI-------GRLVDRLETMRKNVAG-DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKC 86 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTCCS-CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTS
T ss_pred HHHHHHHHhhHHHHHHhHHHHH-------HHHHHHHHHHHHHhcc-CCCccccccCCCcccccCCCCCCCCCCccccccc
Confidence 4556666655433322222222 3556666666544322 3456799999998 2 24456667999998888
Q ss_pred hhhc
Q psy7337 116 IVQD 119 (233)
Q Consensus 116 L~~~ 119 (233)
-...
T Consensus 87 ~~~~ 90 (134)
T 1zbd_B 87 GVET 90 (134)
T ss_dssp EEEC
T ss_pred CCcc
Confidence 7643
No 97
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=71.48 E-value=14 Score=26.41 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=14.5
Q ss_pred CCChhhhhhcCCCcc---chhhHHHHH
Q psy7337 19 LISIEDILPFFSDFT---CMDQFKHAI 42 (233)
Q Consensus 19 ~L~ieDLLp~fpd~v---~I~~fKd~I 42 (233)
...+-+++|.+++.. +++.++.++
T Consensus 20 f~~Lr~~vP~~~~~~k~sk~~iL~kA~ 46 (80)
T 1nlw_A 20 LEKLKGLVPLGPDSSRHTTLSLLTKAK 46 (80)
T ss_dssp HHHHHHSSCCCSSSCCCTTHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCHHHHHHHHH
Confidence 345677888887654 345555544
No 98
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.92 E-value=1.4 Score=30.75 Aligned_cols=29 Identities=24% Similarity=0.550 Sum_probs=23.2
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
.+|+.|+++|.....++-.=|..||..|+
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF 44 (82)
T 2ehe_A 16 NTCAECQQLIGHDSRELFYEDRHFHEGCF 44 (82)
T ss_dssp CBCTTTCCBCCSSCCBCCCSSCCCBTTTS
T ss_pred CcCccCCCccccCcEEEEeCCccccccCC
Confidence 58999999997445555556999999997
No 99
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=70.57 E-value=1.6 Score=31.04 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=22.8
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
...|..|+++|.. .++..-|..||..|+
T Consensus 25 ~~~C~~C~~~I~~--~~~~a~~~~~H~~CF 52 (89)
T 1x64_A 25 MPLCDKCGSGIVG--AVVKARDKYRHPECF 52 (89)
T ss_dssp CCBCTTTCCBCCS--CCEESSSCEECTTTC
T ss_pred CCCcccCCCEecc--cEEEECCceECccCC
Confidence 3679999999975 345668999999997
No 100
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=70.48 E-value=2.7 Score=29.04 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=24.5
Q ss_pred CCCchhhhhhccCCCCeEEe---cCCCccchhhhh
Q psy7337 86 NCDTCLLCEVQLVSNTFYIF---PCGHTFHSHCIV 117 (233)
Q Consensus 86 ~~~~C~~C~~~L~~~~f~vF---pCgH~FH~~CL~ 117 (233)
+...|.+|++|.....+++. .|.--||..|+.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 34679999999865555553 699999999985
No 101
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.23 E-value=1.1 Score=30.88 Aligned_cols=27 Identities=19% Similarity=0.459 Sum_probs=21.7
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
..|+.|+++|.. . ++-.-|..||.+|+
T Consensus 6 ~~C~~C~~~I~~-~-~v~a~~~~wH~~CF 32 (73)
T 1wig_A 6 SGCDSCEKYITG-R-VLEAGEKHYHPSCA 32 (73)
T ss_dssp CSCSSSCCCCSS-C-CBCCSSCCBCTTTS
T ss_pred CCcccCCCEecC-e-eEEeCCCCCCCCcC
Confidence 579999999965 3 34467999999997
No 102
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.00 E-value=1.1 Score=31.56 Aligned_cols=31 Identities=32% Similarity=0.536 Sum_probs=23.9
Q ss_pred CCCchhhhhhccCCCCeEEecCCCccchhhhh
Q psy7337 86 NCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIV 117 (233)
Q Consensus 86 ~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~ 117 (233)
....|..|+++|.....+. .=|..||..|+.
T Consensus 14 ~~~~C~~C~~~I~~~e~v~-a~~~~wH~~CF~ 44 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLC-VNGHFFHRSCFR 44 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCC-BTTBCCBTTTCB
T ss_pred CCCCCcccCCCcccceEEE-ECCCeeCCCcCE
Confidence 3468999999996555554 468999999973
No 103
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=69.94 E-value=1.1 Score=33.93 Aligned_cols=30 Identities=13% Similarity=0.409 Sum_probs=23.4
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCIV 117 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~ 117 (233)
..|+.|+++|.....++-.-|+.||..|+.
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~~~~~H~~CF~ 38 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVKDKVYHLECFK 38 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCSSCCCCTTTCB
T ss_pred CcccCCCCeecCCceEEEECCcccccccCc
Confidence 489999999975555555569999999975
No 104
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=69.56 E-value=1.4 Score=33.85 Aligned_cols=28 Identities=21% Similarity=0.682 Sum_probs=22.9
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
..|+.|+++|.. .+++-.-|..||..|+
T Consensus 62 ~~C~~C~~~I~~-~~~v~a~~~~wH~~CF 89 (123)
T 2l4z_A 62 KRCAGCGGKIAD-RFLLYAMDSYWHSRCL 89 (123)
T ss_dssp SBBSSSSSBCCS-SSEEEETTEEEETTTS
T ss_pred CcCcCCCCCcCC-cEEEEeCCcEEccccc
Confidence 589999999964 4555567999999997
No 105
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=68.54 E-value=2.1 Score=34.89 Aligned_cols=32 Identities=28% Similarity=0.562 Sum_probs=22.3
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
+..|.+|+.. +.-...=.|..+||..|+...+
T Consensus 4 ~~~C~~C~~~--g~ll~Cd~C~~~~H~~C~~p~l 35 (184)
T 3o36_A 4 EDWCAVCQNG--GELLCCEKCPKVFHLSCHVPTL 35 (184)
T ss_dssp CSSCTTTCCC--SSCEECSSSSCEECTTTSSSCC
T ss_pred CCccccCCCC--CeeeecCCCCcccCccccCCCC
Confidence 4679999976 3322222399999999997554
No 106
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=68.27 E-value=2.9 Score=26.92 Aligned_cols=32 Identities=22% Similarity=0.604 Sum_probs=21.5
Q ss_pred chhhhhhccCCCCeEE-ecCCCccchhhhhhcC
Q psy7337 89 TCLLCEVQLVSNTFYI-FPCGHTFHSHCIVQDL 120 (233)
Q Consensus 89 ~C~~C~~~L~~~~f~v-FpCgH~FH~~CL~~~~ 120 (233)
.|.+|+++-....++. -.|...||..|+..-+
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l 34 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPAL 34 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCc
Confidence 5899998742222322 2499999999996443
No 107
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=67.90 E-value=2 Score=29.17 Aligned_cols=35 Identities=17% Similarity=0.606 Sum_probs=24.2
Q ss_pred CCCchhhhhhccC-CCCeEEec--CCCccchhhhhhcC
Q psy7337 86 NCDTCLLCEVQLV-SNTFYIFP--CGHTFHSHCIVQDL 120 (233)
Q Consensus 86 ~~~~C~~C~~~L~-~~~f~vFp--CgH~FH~~CL~~~~ 120 (233)
.+..|.+|+..-. ....++|= |.-+||..|+...+
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l 42 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHI 42 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCC
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcc
Confidence 3467999998632 12333333 99999999998654
No 108
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=67.12 E-value=2 Score=29.71 Aligned_cols=28 Identities=18% Similarity=0.470 Sum_probs=22.5
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
...|+.|+++|... ++-.=|..||..|+
T Consensus 15 ~~~C~~C~~~I~~~--~v~a~~~~~H~~CF 42 (80)
T 2cuq_A 15 APRCARCSKTLTQG--GVTYRDQPWHRECL 42 (80)
T ss_dssp SCCCTTTCCCCCSC--CEESSSSEECTTTC
T ss_pred CCcCCCCCCEecCc--EEEECCchhhhhhC
Confidence 36899999999654 35567999999997
No 109
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=67.08 E-value=2.4 Score=31.39 Aligned_cols=31 Identities=35% Similarity=0.780 Sum_probs=23.2
Q ss_pred CCCchhhhhhccCCCCeEEec---CCCccchhhhhhc
Q psy7337 86 NCDTCLLCEVQLVSNTFYIFP---CGHTFHSHCIVQD 119 (233)
Q Consensus 86 ~~~~C~~C~~~L~~~~f~vFp---CgH~FH~~CL~~~ 119 (233)
.+..|.+|..-= .-..|| |+-+||..||.+.
T Consensus 14 ~D~~C~VC~~~t---~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVWT---AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCCC---SSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCcccccc---ccceeccccccccccHhhcccc
Confidence 568899998532 233566 8999999999874
No 110
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.04 E-value=1.6 Score=30.25 Aligned_cols=27 Identities=15% Similarity=0.557 Sum_probs=21.7
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
.+|+.|+++|. ..++-.-|..||..|+
T Consensus 16 ~~C~~C~~~I~--~~~~~a~~~~~H~~CF 42 (81)
T 1x6a_A 16 EFCHGCSLLMT--GPFMVAGEFKYHPECF 42 (81)
T ss_dssp CBCTTTCCBCC--SCCBCCTTCCBCTTSC
T ss_pred CcCccCCCCcC--ceEEEECCceeccccC
Confidence 58999999996 3345556999999997
No 111
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=65.65 E-value=1.8 Score=31.22 Aligned_cols=32 Identities=13% Similarity=0.336 Sum_probs=24.0
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhhhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQ 118 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~ 118 (233)
...|+.|+++|.....++-.=|..||..|+.=
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C 36 (101)
T 2cup_A 5 SSGCVECRKPIGADSKEVHYKNRFWHDTCFRC 36 (101)
T ss_dssp CCBCSSSCCBCCSSSCEEEETTEEEETTTCCC
T ss_pred CCcCcccCCcccCCceEEEECccChhhcCCcc
Confidence 36799999999644455555689999999863
No 112
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.64 E-value=1.9 Score=29.01 Aligned_cols=27 Identities=15% Similarity=0.477 Sum_probs=21.9
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
..|+.|+++|.. .. +..-|..||..|+
T Consensus 6 ~~C~~C~~~I~~-~~-~~a~~~~~H~~CF 32 (70)
T 2d8z_A 6 SGCVQCKKPITT-GG-VTYREQPWHKECF 32 (70)
T ss_dssp CBCSSSCCBCCS-SE-EESSSSEEETTTS
T ss_pred CCCcccCCeecc-ce-EEECccccCCCCC
Confidence 579999999964 44 5567999999997
No 113
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.63 E-value=1.7 Score=30.25 Aligned_cols=29 Identities=17% Similarity=0.631 Sum_probs=23.2
Q ss_pred CCCchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 86 NCDTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 86 ~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
....|+.|+++|.+. ++-.-|..||..|+
T Consensus 14 ~~~~C~~C~~~I~~~--~~~a~~~~~H~~CF 42 (81)
T 2dlo_A 14 TLEKCATCSQPILDR--ILRAMGKAYHPGCF 42 (81)
T ss_dssp SCCBCTTTCCBCCSC--CEEETTEEECTTTC
T ss_pred CCCccccCCCeecce--eEEECCccccHHhc
Confidence 457899999999743 55567999999997
No 114
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.26 E-value=1.6 Score=29.41 Aligned_cols=28 Identities=18% Similarity=0.435 Sum_probs=21.7
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
...|+.|+++|.. .++ -.=|..||.+|+
T Consensus 5 ~~~C~~C~~~I~~-~~~-~a~~~~~H~~CF 32 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGI-TYQDQPWHADCF 32 (69)
T ss_dssp CCCCSSSCCCCCT-TCE-EETTEEECTTTT
T ss_pred cCCCcccCCEeCc-ceE-EECccccccCcC
Confidence 3689999999964 444 345899999997
No 115
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=65.11 E-value=1.5 Score=30.57 Aligned_cols=30 Identities=20% Similarity=0.443 Sum_probs=23.2
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIV 117 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~ 117 (233)
..+|+.|+++|..... +-.-|..||..|+.
T Consensus 7 ~~~C~~C~~~I~~~~~-~~a~~~~~H~~CF~ 36 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEE-VQCDGRSFHRCCFL 36 (81)
T ss_dssp -CBCSSSCCBCSSTTE-EEETTEEEESSSEE
T ss_pred CCcCcCcCccccCcee-EEeCCcccccccCc
Confidence 4689999999965554 45579999999974
No 116
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.09 E-value=1.8 Score=30.12 Aligned_cols=27 Identities=22% Similarity=0.674 Sum_probs=21.9
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
.+|+.|+++|.. . ++-.-|..||..|+
T Consensus 16 ~~C~~C~~~I~~-~-~v~a~~~~wH~~CF 42 (81)
T 1v6g_A 16 TRCFSCDQFIEG-E-VVSALGKTYHPDCF 42 (81)
T ss_dssp CBCTTTCCBCCS-C-CEEETTEEECTTTS
T ss_pred CcCccccCEecc-c-eEEECCceeCccCC
Confidence 589999999963 3 44557999999997
No 117
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=64.05 E-value=1.8 Score=35.99 Aligned_cols=31 Identities=29% Similarity=0.622 Sum_probs=21.7
Q ss_pred CCchhhhhhccCCCCeEEe-cCCCccchhhhhhcC
Q psy7337 87 CDTCLLCEVQLVSNTFYIF-PCGHTFHSHCIVQDL 120 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vF-pCgH~FH~~CL~~~~ 120 (233)
+..|.+|+.+ + ..+.= .|..+||..|+...+
T Consensus 7 ~~~C~~C~~~--g-~ll~Cd~C~~~~H~~Cl~p~l 38 (207)
T 3u5n_A 7 EDWCAVCQNG--G-DLLCCEKCPKVFHLTCHVPTL 38 (207)
T ss_dssp CSSBTTTCCC--E-EEEECSSSSCEECTTTSSSCC
T ss_pred CCCCCCCCCC--C-ceEEcCCCCCccCCccCCCCC
Confidence 4679999976 2 22222 299999999997544
No 118
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.56 E-value=1.7 Score=29.35 Aligned_cols=28 Identities=18% Similarity=0.548 Sum_probs=21.9
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
...|..|+++|.+ .+ +-.-|..||.+|+
T Consensus 5 ~~~C~~C~~~I~~-~~-~~a~~~~~H~~CF 32 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RV-IKAMNNSWHPECF 32 (70)
T ss_dssp SSBCSSSCCBCCS-CC-EEETTEEECTTTS
T ss_pred CCcCccCCCEecc-eE-EEECcccccccCC
Confidence 4679999999964 33 4456899999997
No 119
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=62.36 E-value=2.1 Score=30.43 Aligned_cols=27 Identities=15% Similarity=0.516 Sum_probs=21.6
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
..|+.|+++|. .. ++..-|..||..|+
T Consensus 26 ~~C~~C~~~I~-~~-~v~a~~~~~H~~CF 52 (90)
T 2dar_A 26 PMCAHCNQVIR-GP-FLVALGKSWHPEEF 52 (90)
T ss_dssp CBBSSSCCBCC-SC-EEEETTEEECTTTC
T ss_pred CCCccCCCEec-ce-EEEECCccccccCC
Confidence 57999999994 33 44456999999997
No 120
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=62.16 E-value=3.6 Score=30.75 Aligned_cols=35 Identities=17% Similarity=0.489 Sum_probs=25.5
Q ss_pred CCCchhhhhhccCCCCeE-EecCCCccchhhhhhcC
Q psy7337 86 NCDTCLLCEVQLVSNTFY-IFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 86 ~~~~C~~C~~~L~~~~f~-vFpCgH~FH~~CL~~~~ 120 (233)
.+..|.+|+..-...+++ --.|+.+||..||...+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~ 41 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAV 41 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCC
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCcc
Confidence 457899999874223333 34599999999998765
No 121
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=60.67 E-value=3.5 Score=27.61 Aligned_cols=32 Identities=22% Similarity=0.559 Sum_probs=22.5
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
+..|.+|+.. +.=..-=.|.-+||..|+...+
T Consensus 5 ~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl 36 (60)
T 2puy_A 5 EDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPL 36 (60)
T ss_dssp CSSCTTTCCC--SSCEECSSSSCEECGGGSSSCC
T ss_pred CCCCcCCCCC--CcEEEcCCCCcCEECCcCCCCc
Confidence 4679999985 3222223499999999998544
No 122
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=60.56 E-value=28 Score=25.40 Aligned_cols=39 Identities=10% Similarity=0.238 Sum_probs=29.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7337 34 CMDQFKHAICASLEQYNQHIVDLKEDMSEATRSAEQVRN 72 (233)
Q Consensus 34 ~I~~fKd~I~~sL~ey~~~Ie~lk~eie~~~~~~~~l~~ 72 (233)
.+..||..+.+-|.....+|+.++..|+...+.+..|+.
T Consensus 41 qL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 41 QLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456788888888888888888888888776666666543
No 123
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=60.37 E-value=32 Score=24.22 Aligned_cols=57 Identities=12% Similarity=0.215 Sum_probs=28.7
Q ss_pred CChhhhhhcCCC--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7337 20 ISIEDILPFFSD--FTCMDQFKHAICASLEQYNQHIVDLKEDMSEATRSAEQVRNDIQAC 77 (233)
Q Consensus 20 L~ieDLLp~fpd--~v~I~~fKd~I~~sL~ey~~~Ie~lk~eie~~~~~~~~l~~el~~l 77 (233)
..+-++||.+++ ...+..++.+| +++..-..+++.+..+++........++..+..+
T Consensus 22 ~~Lr~lvP~~~~~k~sK~~iL~~Ai-~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 22 HSLRDSVPSLQGEKASRAQILDKAT-EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHTTSGGGTTSCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567777653 23334444433 3444444444555555555555555555555444
No 124
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=60.20 E-value=5.3 Score=30.03 Aligned_cols=35 Identities=17% Similarity=0.414 Sum_probs=24.0
Q ss_pred ccCCCchhhhhhcc------CCCCeEE-ecCCCccchhhhhh
Q psy7337 84 IQNCDTCLLCEVQL------VSNTFYI-FPCGHTFHSHCIVQ 118 (233)
Q Consensus 84 I~~~~~C~~C~~~L------~~~~f~v-FpCgH~FH~~CL~~ 118 (233)
|.+...|.+|+..= ...+++. -.|+.+||..||..
T Consensus 2 v~p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~ 43 (112)
T 3v43_A 2 MEPIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKF 43 (112)
T ss_dssp CCCCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTC
T ss_pred CccCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcC
Confidence 45678899997642 1223443 34999999999963
No 125
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=59.14 E-value=3.7 Score=30.56 Aligned_cols=29 Identities=17% Similarity=0.520 Sum_probs=22.9
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCIV 117 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~ 117 (233)
..|+.|+++|.. ..++-.-|..||..|+.
T Consensus 4 ~~C~~C~~~I~~-~~~~~a~~~~wH~~CF~ 32 (114)
T 1j2o_A 4 LTCGGCQQNIGD-RYFLKAIDQYWHEDCLS 32 (114)
T ss_dssp BCBSSSCSCBCS-SEEEECSSSEECTTTCC
T ss_pred CCCcCCCCeeCC-cEEEEECchhHHHhcCc
Confidence 579999999964 44555679999999986
No 126
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=58.83 E-value=2.5 Score=28.21 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=21.7
Q ss_pred CchhhhhhccCCCCeEEecCCCccc--hhhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFH--SHCI 116 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH--~~CL 116 (233)
..|+.|+++|....-++-.-|..|| .+|+
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF 33 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECF 33 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTS
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCE
Confidence 4799999999753234444599999 9997
No 127
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=58.11 E-value=4.1 Score=32.38 Aligned_cols=29 Identities=17% Similarity=0.505 Sum_probs=22.3
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
.+|..|+++|.....++-.-|+.||..|+
T Consensus 66 ~~C~~C~~~I~~~~~v~~a~~~~~H~~CF 94 (169)
T 2rgt_A 66 TKCAACQLGIPPTQVVRRAQDFVYHLHCF 94 (169)
T ss_dssp CBCTTTCCBCCTTSEEEEETTEEEEGGGC
T ss_pred ccccccccccCCCcEEEEcCCceEeeCCC
Confidence 57888888886666665566888998886
No 128
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=58.08 E-value=44 Score=23.66 Aligned_cols=46 Identities=13% Similarity=0.289 Sum_probs=32.1
Q ss_pred chhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7337 34 CMDQFKHAICASLE---QYNQHIVDLKEDMSEATRSAEQVRNDIQACAN 79 (233)
Q Consensus 34 ~I~~fKd~I~~sL~---ey~~~Ie~lk~eie~~~~~~~~l~~el~~l~~ 79 (233)
+|..+++.|-...+ .-...|..+...+.+....+..++.++.+++.
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 57788877755554 34445777788888777777788877777643
No 129
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=58.00 E-value=4 Score=29.32 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=19.8
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
.+|..|+++|.....++-.=|..||.+|+
T Consensus 67 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF 95 (101)
T 2cup_A 67 PKCKGCFKAIVAGDQNVEYKGTVWHKDCF 95 (101)
T ss_dssp CBCSSSCCBCCSSSCEEESSSCEEETTTC
T ss_pred CccccCCCccccCCeEEEeCCcchHHhCC
Confidence 57888888886444444445888888876
No 130
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=57.83 E-value=3.9 Score=33.74 Aligned_cols=32 Identities=22% Similarity=0.575 Sum_probs=22.2
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
+..|.+|+.. +.-...=.|-.+||..|+...+
T Consensus 2 ~~~C~~C~~~--g~ll~Cd~C~~~~H~~Cl~p~l 33 (189)
T 2ro1_A 2 ATICRVCQKP--GDLVMCNQCEFCFHLDCHLPAL 33 (189)
T ss_dssp CCCBTTTCCC--SSCCCCTTTCCBCCSTTSTTCC
T ss_pred CCcCccCCCC--CceeECCCCCchhccccCCCCc
Confidence 4679999976 2222233499999999996544
No 131
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.53 E-value=2.9 Score=29.17 Aligned_cols=28 Identities=11% Similarity=0.213 Sum_probs=21.9
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
...|+.|+++|.+ .+ +-.-|..||.+|+
T Consensus 15 ~~~C~~C~~~I~~-~~-v~a~~~~~H~~CF 42 (79)
T 2cor_A 15 KYICQKCHAIIDE-QP-LIFKNDPYHPDHF 42 (79)
T ss_dssp CCBCTTTCCBCCS-CC-CCCSSSCCCTTTS
T ss_pred CCCCccCCCEecc-eE-EEECcceeCCCCC
Confidence 3689999999973 33 4456999999997
No 132
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=57.36 E-value=3.4 Score=31.19 Aligned_cols=28 Identities=14% Similarity=0.457 Sum_probs=21.8
Q ss_pred chhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 89 TCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 89 ~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
+|..|+++|.....++-.=|+.||..|+
T Consensus 68 ~C~~C~~~I~~~e~~~~a~~~~~H~~CF 95 (131)
T 2xjy_A 68 LCASCDKRIRAYEMTMRVKDKVYHLECF 95 (131)
T ss_dssp ECTTTCCEECTTSEEEEETTEEEEGGGC
T ss_pred ChhhcCCccCccceeEeeCCceECccCc
Confidence 7888988886655666567888998885
No 133
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=57.17 E-value=5.5 Score=31.84 Aligned_cols=54 Identities=20% Similarity=0.414 Sum_probs=33.3
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCCh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGS 151 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~ 151 (233)
+..|.+|+..- .=+.-=.|-.+||..||...+++...+.+.. ..++ =.||.|..
T Consensus 63 ~d~C~vC~~GG--~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~------p~~~---W~C~~C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEGG--NLICCDFCHNAFCKKCILRNLGRKELSTIMD------ENNQ---WYCYICHP 116 (142)
T ss_dssp BCSCSSSCCCS--SEEECSSSCCEEEHHHHHHHTCHHHHHHHHT------STTC---CCCTTTCC
T ss_pred CCeecccCCCC--cEEeCCCCCCeeeHhhcCCCCChhhhhhccc------CCCC---CEeecccC
Confidence 36799998852 2122225999999999998876544333210 0112 36999964
No 134
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=56.99 E-value=3.5 Score=31.08 Aligned_cols=31 Identities=16% Similarity=0.469 Sum_probs=23.8
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhhhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQ 118 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~ 118 (233)
...|+.|+++|.... ++-.-|..||..|+.=
T Consensus 5 ~~~C~~C~~~I~~~~-~~~a~~~~wH~~CF~C 35 (122)
T 1m3v_A 5 WKRCAGCGGKIADRF-LLYAMDSYWHSRCLKC 35 (122)
T ss_dssp CCCBSSSSSCCCSSC-CEEETTEEECHHHHCC
T ss_pred CCCCcccCCEeCCcE-EEEECCceeHhhCCCc
Confidence 368999999996554 3445699999999873
No 135
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=56.48 E-value=5.3 Score=29.75 Aligned_cols=37 Identities=24% Similarity=0.471 Sum_probs=21.3
Q ss_pred CCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChh
Q psy7337 107 CGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSH 152 (233)
Q Consensus 107 CgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~ 152 (233)
|++-||..|.. ++......|.. +-......||.|...
T Consensus 8 c~~w~H~~c~~--~~~~~~~~l~~-------lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 8 CDRWVHSKCEN--LSDEMYEILSN-------LPESVAYTCVNCTER 44 (140)
T ss_dssp CSSCHHHHHCC--CCHHHHHHHHS-------SCTTTTCCSSCCTTT
T ss_pred CCCccCCcccc--cCHHHHHHHhh-------ccccceeeCcccccc
Confidence 88899999974 33322222221 111224789999764
No 136
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=56.19 E-value=3.7 Score=28.29 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=22.6
Q ss_pred hCCCCCCChhhhhhhhccCCCCCCCchhh
Q psy7337 143 SRECPYCGSHMIEKESKKEGGDGGGTEEK 171 (233)
Q Consensus 143 a~eCPlCG~~~i~~Id~pf~~~~~~~ee~ 171 (233)
...||.||......--..|.+++.+..-+
T Consensus 18 k~~CP~CG~~T~~~hParfSp~Dky~~yR 46 (60)
T 2apo_B 18 KEICPKCGEKTVIPKPPKFSLEDRWGKYR 46 (60)
T ss_dssp SSBCSSSCSBCBCCCCCCCCTTCTTHHHH
T ss_pred cccCcCCCCcCCCCCCCCCCCCcchHHHH
Confidence 46899999988777777888777766655
No 137
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=56.03 E-value=4.3 Score=29.46 Aligned_cols=35 Identities=17% Similarity=0.442 Sum_probs=25.2
Q ss_pred CCCchhhhhhccCC-CCeEEec--CCCccchhhhhhcC
Q psy7337 86 NCDTCLLCEVQLVS-NTFYIFP--CGHTFHSHCIVQDL 120 (233)
Q Consensus 86 ~~~~C~~C~~~L~~-~~f~vFp--CgH~FH~~CL~~~~ 120 (233)
.+..|.+|+..-.. ..-++|= |..+||..|+.--+
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl 52 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQV 52 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcc
Confidence 35689999987321 2345554 99999999998665
No 138
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=55.91 E-value=9.4 Score=31.53 Aligned_cols=31 Identities=23% Similarity=0.533 Sum_probs=24.0
Q ss_pred CCchhhhhhccCCCCe---EEe--cCCCccchhhhh
Q psy7337 87 CDTCLLCEVQLVSNTF---YIF--PCGHTFHSHCIV 117 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f---~vF--pCgH~FH~~CL~ 117 (233)
++.|++|+++.....+ .+- .|..-||..|..
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvg 37 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCEN 37 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccc
Confidence 4679999999765543 444 399999999985
No 139
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=55.62 E-value=7.3 Score=30.60 Aligned_cols=52 Identities=19% Similarity=0.438 Sum_probs=33.5
Q ss_pred CchhhhhhccCCCCeEE-ecCCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCCh
Q psy7337 88 DTCLLCEVQLVSNTFYI-FPCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGS 151 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~v-FpCgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~ 151 (233)
..|.+|+..- ..+. =.|-.+||..||...+++...+.+.. +.+. =.|++|..
T Consensus 58 ~~C~vC~dGG---~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~------~~~~---W~C~~C~~ 110 (129)
T 3ql9_A 58 EQCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRRELSTIMD------ENNQ---WYCYICHP 110 (129)
T ss_dssp SSCTTTCCCS---EEEECSSSSCEEEHHHHHHHTCHHHHHHHTC------TTSC---CCCTTTCC
T ss_pred CcCeecCCCC---eeEecCCCchhhhHHHhCCCcchhHHHHhcc------CCCC---eEcCCcCC
Confidence 5699998752 2221 14999999999998886654444321 0122 47999976
No 140
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=55.16 E-value=31 Score=26.86 Aligned_cols=41 Identities=15% Similarity=0.069 Sum_probs=20.1
Q ss_pred HHhhcCCCChhhhhhcCC----CccchhhHHHHHHHHHHHHHHHHH
Q psy7337 13 FLDESDLISIEDILPFFS----DFTCMDQFKHAICASLEQYNQHIV 54 (233)
Q Consensus 13 ~l~es~~L~ieDLLp~fp----d~v~I~~fKd~I~~sL~ey~~~Ie 54 (233)
.+++. -++|++|-.++. +..+++.+...+...+.+-..+|.
T Consensus 68 ~lr~~-G~sL~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~ 112 (148)
T 3gpv_A 68 CLKNT-GMPIQKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQ 112 (148)
T ss_dssp HHHTT-TCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHc-CCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33443 477777777775 233444444444433333333333
No 141
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=55.11 E-value=3.8 Score=28.04 Aligned_cols=33 Identities=27% Similarity=0.570 Sum_probs=22.7
Q ss_pred CCCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 86 NCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 86 ~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
.+..|.+|+.. +.=..-=.|..+||..|+...+
T Consensus 7 ~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~ppl 39 (66)
T 1xwh_A 7 NEDECAVCRDG--GELICCDGCPRAFHLACLSPPL 39 (66)
T ss_dssp CCCSBSSSSCC--SSCEECSSCCCEECTTTSSSCC
T ss_pred CCCCCccCCCC--CCEEEcCCCChhhcccccCCCc
Confidence 45679999975 2222222499999999998543
No 142
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=55.01 E-value=33 Score=24.32 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=14.5
Q ss_pred HHHHhhcCCCChhhhhhcCC
Q psy7337 11 LEFLDESDLISIEDILPFFS 30 (233)
Q Consensus 11 l~~l~es~~L~ieDLLp~fp 30 (233)
|..+++.| +++++|-.|++
T Consensus 9 I~~lr~lG-fsL~eIk~~l~ 27 (99)
T 1q08_A 9 IRHARQLG-FSLESIRELLS 27 (99)
T ss_dssp HHHHHHTT-CCHHHHHHHHH
T ss_pred HHHHHHCC-CCHHHHHHHHH
Confidence 45566666 89999988885
No 143
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.74 E-value=3.2 Score=28.59 Aligned_cols=28 Identities=14% Similarity=0.523 Sum_probs=22.1
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
...|+.|+++|.. .+ +-.-|..||..|+
T Consensus 15 ~~~C~~C~~~I~~-~~-v~a~~~~~H~~CF 42 (80)
T 1x3h_A 15 SPKCGGCNRPVLE-NY-LSAMDTVWHPECF 42 (80)
T ss_dssp SCBCTTTCCBCCS-SC-EEETTEEECTTTC
T ss_pred CCccccCCCeecc-ee-EEECCCeEecCcC
Confidence 3689999999975 33 4556899999997
No 144
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=54.59 E-value=3.9 Score=33.15 Aligned_cols=29 Identities=17% Similarity=0.565 Sum_probs=24.1
Q ss_pred chhhhhhccCCCCeEEecCCCccchhhhh
Q psy7337 89 TCLLCEVQLVSNTFYIFPCGHTFHSHCIV 117 (233)
Q Consensus 89 ~C~~C~~~L~~~~f~vFpCgH~FH~~CL~ 117 (233)
+|..|+++|.....++-.-|+.||..|+.
T Consensus 71 ~C~~C~~~I~~~e~~i~a~~~~~H~~CF~ 99 (188)
T 1rut_X 71 ACSACGQSIPASELVMRAQGNVYHLKCFT 99 (188)
T ss_dssp ECTTTCCEECTTSEEEEETTEEECGGGCB
T ss_pred ccccCCCccccCcEEEEcCCCEEeCCCCe
Confidence 79999999976666666679999999975
No 145
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.95 E-value=3.4 Score=27.27 Aligned_cols=33 Identities=21% Similarity=0.554 Sum_probs=23.2
Q ss_pred CCCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 86 NCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 86 ~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
.+..|.+|+.. +.=..--.|..+||..|+...+
T Consensus 8 ~~~~C~vC~~~--g~ll~Cd~C~~~~H~~Cl~ppl 40 (56)
T 2yql_A 8 HEDFCSVCRKS--GQLLMCDTCSRVYHLDCLDPPL 40 (56)
T ss_dssp SCCSCSSSCCS--SCCEECSSSSCEECSSSSSSCC
T ss_pred CCCCCccCCCC--CeEEEcCCCCcceECccCCCCc
Confidence 34679999985 3222333499999999998544
No 146
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=53.70 E-value=9.5 Score=27.70 Aligned_cols=33 Identities=18% Similarity=0.408 Sum_probs=25.7
Q ss_pred CCchhhhhhccCC----CCeEEecCCCccchhhhhhc
Q psy7337 87 CDTCLLCEVQLVS----NTFYIFPCGHTFHSHCIVQD 119 (233)
Q Consensus 87 ~~~C~~C~~~L~~----~~f~vFpCgH~FH~~CL~~~ 119 (233)
+..|.+|++++.. ..|----|+-.+|.+|..+.
T Consensus 38 ~s~C~vC~k~c~s~~~L~g~rC~WCq~~VH~~C~~~~ 74 (84)
T 1r79_A 38 SAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKESL 74 (84)
T ss_dssp TCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHHC
T ss_pred CCEeCCCCCEeCCccCCCCCCCcccChhHHHHHHHhc
Confidence 4689999999753 34556669999999998664
No 147
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=53.38 E-value=8.2 Score=26.69 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=23.2
Q ss_pred CchhhhhhccCCCCeEEe--cCCCccchhhhhhcC
Q psy7337 88 DTCLLCEVQLVSNTFYIF--PCGHTFHSHCIVQDL 120 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vF--pCgH~FH~~CL~~~~ 120 (233)
..|.+|+++-. ..+.++ .|.-.||..|+.-..
T Consensus 19 ~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~ 52 (75)
T 2k16_A 19 WICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMA 52 (75)
T ss_dssp ECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSS
T ss_pred cCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCc
Confidence 45999999853 334444 399999999997543
No 148
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=53.08 E-value=8.6 Score=25.84 Aligned_cols=33 Identities=21% Similarity=0.646 Sum_probs=23.3
Q ss_pred cCCCchhhhhhccCCCCeEEe-cCCCccchhhhhhcC
Q psy7337 85 QNCDTCLLCEVQLVSNTFYIF-PCGHTFHSHCIVQDL 120 (233)
Q Consensus 85 ~~~~~C~~C~~~L~~~~f~vF-pCgH~FH~~CL~~~~ 120 (233)
..+..|.+|+.. + .++.= .|..+||..|+...+
T Consensus 9 ~~~~~C~vC~~~--g-~ll~CD~C~~~fH~~Cl~p~l 42 (61)
T 2l5u_A 9 DHQDYCEVCQQG--G-EIILCDTCPRAYHMVCLDPDM 42 (61)
T ss_dssp CCCSSCTTTSCC--S-SEEECSSSSCEEEHHHHCTTC
T ss_pred CCCCCCccCCCC--C-cEEECCCCChhhhhhccCCCC
Confidence 345789999985 2 22222 399999999998644
No 149
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=51.42 E-value=76 Score=26.33 Aligned_cols=47 Identities=11% Similarity=-0.021 Sum_probs=27.1
Q ss_pred HHHHhhcCCCChhhhhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7337 11 LEFLDESDLISIEDILPFFSDFTCMDQFKHAICASLEQYNQHIVDLKEDM 60 (233)
Q Consensus 11 l~~l~es~~L~ieDLLp~fpd~v~I~~fKd~I~~sL~ey~~~Ie~lk~ei 60 (233)
|..|++.| +++++|-.++... .+.++..+.+.+.+-..+|..++...
T Consensus 56 i~~l~~~g-~~l~~i~~~~~~~--~~~~~~~l~~~~~~l~~~i~~l~~~~ 102 (278)
T 1r8e_A 56 IKSLKYIG-TPLEEMKKAQDLE--MEELFAFYTEQERQIREKLDFLSALE 102 (278)
T ss_dssp HHHHHHTT-CCHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCC-CCHHHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556665 9999999999765 44454444444444444444443333
No 150
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=51.26 E-value=6.3 Score=31.89 Aligned_cols=30 Identities=20% Similarity=0.592 Sum_probs=23.8
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhhhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQ 118 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~ 118 (233)
..|..|+++|.. ..++..-|..||..|+.=
T Consensus 6 ~~C~~C~~~I~~-~~~~~a~~~~wH~~CF~C 35 (188)
T 1rut_X 6 KRCAGCGGKIAD-RFLLYAMDSYWHSRCLKC 35 (188)
T ss_dssp CBBTTTCCBCCC-SEEEEETTEEECGGGCBC
T ss_pred CcCccCCCEeCC-ceeEEecCcEecccCccc
Confidence 679999999964 455556799999999863
No 151
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=51.22 E-value=7.2 Score=28.33 Aligned_cols=37 Identities=19% Similarity=0.459 Sum_probs=25.2
Q ss_pred cccCCCchhhhhhccC-CCCeEEe--cCCCccchhhhhhc
Q psy7337 83 MIQNCDTCLLCEVQLV-SNTFYIF--PCGHTFHSHCIVQD 119 (233)
Q Consensus 83 iI~~~~~C~~C~~~L~-~~~f~vF--pCgH~FH~~CL~~~ 119 (233)
.+..+..|.+|+..-. ...-+++ .|.-+||..|+.-.
T Consensus 21 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~ 60 (88)
T 2l43_A 21 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP 60 (88)
T ss_dssp CCCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCS
T ss_pred cCCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCC
Confidence 3455678999998631 1223333 39999999999754
No 152
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=51.18 E-value=41 Score=26.09 Aligned_cols=64 Identities=11% Similarity=0.181 Sum_probs=33.4
Q ss_pred hHHHHH--HHHhhcCCCChhhhhhcCC----CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7337 6 DIKTAL--EFLDESDLISIEDILPFFS----DFTCMDQFKHAICASLEQYNQHIVDLKEDMSEATRSAEQV 70 (233)
Q Consensus 6 dI~~al--~~l~es~~L~ieDLLp~fp----d~v~I~~fKd~I~~sL~ey~~~Ie~lk~eie~~~~~~~~l 70 (233)
||..+. ..|++. -+++++|-.++. +..+++..+..+.+.+..-..+|..++...+.....+...
T Consensus 45 dl~~l~~I~~lr~~-G~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 114 (142)
T 3gp4_A 45 DLRWILFTRQMRRA-GLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNY 114 (142)
T ss_dssp HHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333 344444 478888877764 2234555555555555555555555544444444433333
No 153
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=51.10 E-value=3.9 Score=27.62 Aligned_cols=32 Identities=22% Similarity=0.596 Sum_probs=21.7
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
+..|.+|+.. +.-..-=.|..+||..|+...+
T Consensus 9 ~~~C~vC~~~--g~ll~Cd~C~~~fH~~Cl~ppl 40 (61)
T 1mm2_A 9 MEFCRVCKDG--GELLCCDTCPSSYHIHCLNPPL 40 (61)
T ss_dssp CSSCTTTCCC--SSCBCCSSSCCCBCSSSSSSCC
T ss_pred CCcCCCCCCC--CCEEEcCCCCHHHcccccCCCc
Confidence 4679999874 2212222399999999998544
No 154
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=50.49 E-value=5.6 Score=29.90 Aligned_cols=29 Identities=17% Similarity=0.520 Sum_probs=22.1
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCIV 117 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~ 117 (233)
..|+.|+++|.+ ..++..=|..||..|+.
T Consensus 3 ~~C~~C~~~I~~-~~~~~a~~~~wH~~CF~ 31 (131)
T 2xjy_A 3 LTCGGCQQNIGD-RYFLKAIDQYWHEDCLS 31 (131)
T ss_dssp CBBTTTCCBCCS-SEEEEETTEEEETTTCB
T ss_pred ccCcCCCCEeCC-cEEEEECCCcccHHHcc
Confidence 579999999864 44555578889998886
No 155
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=50.25 E-value=1.1e+02 Score=25.26 Aligned_cols=37 Identities=8% Similarity=0.023 Sum_probs=16.6
Q ss_pred HHHHHHHhhc-CCCChhhhhhcCCCccchhhHHHHHHHH
Q psy7337 8 KTALEFLDES-DLISIEDILPFFSDFTCMDQFKHAICAS 45 (233)
Q Consensus 8 ~~al~~l~es-~~L~ieDLLp~fpd~v~I~~fKd~I~~s 45 (233)
+...++|..- +...+ .+-|.-.-..+..+|+..+---
T Consensus 78 ~~~~~~l~~l~~~~~i-~~~p~~~~gst~enL~~a~~gE 115 (202)
T 1yuz_A 78 GLEYALVAEMEPGYEK-PTVAAPSAYSCDLNLISGANGE 115 (202)
T ss_dssp HHHHHHHHHHSTTCCC-CCC--CCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcee-ccCCccCCCCHHHHHHHHHHhH
Confidence 3444555543 44555 5555422124556666555433
No 156
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=48.16 E-value=5.4 Score=31.66 Aligned_cols=29 Identities=21% Similarity=0.614 Sum_probs=22.9
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCIV 117 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~ 117 (233)
..|..|+++|.. .+++-.-|..||..|+.
T Consensus 7 ~~C~~C~~~I~~-~~~~~a~~~~wH~~CF~ 35 (169)
T 2rgt_A 7 PMCAGCDQHILD-RFILKALDRHWHSKCLK 35 (169)
T ss_dssp CBBSSSSSBCCS-SSCEECSSCEECTTTSB
T ss_pred CccccCCCccCC-cEEEEECCcEEccccCc
Confidence 579999999965 44555579999999986
No 157
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=48.00 E-value=6.2 Score=29.51 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=21.4
Q ss_pred CchhhhhhccCCCCeEEecCCCccc--hhhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFH--SHCI 116 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH--~~CL 116 (233)
.+|+.|+++|.....++-.-|+.|| ..|+
T Consensus 64 ~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF 94 (126)
T 2xqn_T 64 VVCQGCHNAIDPEVQRVTYNNFSWHASTECF 94 (126)
T ss_dssp CBCTTTCSBCCTTSCEEEETTEEEESSTTTS
T ss_pred ccCcccCCcCCcCceEEECCCCEeeCCCCCc
Confidence 5788888888654555556688888 8785
No 158
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=47.44 E-value=8.5 Score=28.59 Aligned_cols=32 Identities=16% Similarity=0.465 Sum_probs=22.2
Q ss_pred chhhhhhccCCCCe-EEecCCCccchhhhhhcC
Q psy7337 89 TCLLCEVQLVSNTF-YIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 89 ~C~~C~~~L~~~~f-~vFpCgH~FH~~CL~~~~ 120 (233)
.|.+|++.-....+ .--.|..+||..||...+
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl 88 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVM 88 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCcc
Confidence 58888887533333 333499999999997544
No 159
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=46.67 E-value=12 Score=26.10 Aligned_cols=34 Identities=18% Similarity=0.412 Sum_probs=23.7
Q ss_pred CCCchhhhhhcc-CCCCeEEec--CCCccchhhhhhc
Q psy7337 86 NCDTCLLCEVQL-VSNTFYIFP--CGHTFHSHCIVQD 119 (233)
Q Consensus 86 ~~~~C~~C~~~L-~~~~f~vFp--CgH~FH~~CL~~~ 119 (233)
....|.+|+..- .....++|= |.-+||..|+.-.
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~ 51 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVP 51 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCC
Confidence 457899999863 122334443 9999999999743
No 160
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=46.19 E-value=7.3 Score=27.08 Aligned_cols=32 Identities=25% Similarity=0.566 Sum_probs=20.7
Q ss_pred chhhhhhccCCCCeEEe-cCCCccchhhhhhcC
Q psy7337 89 TCLLCEVQLVSNTFYIF-PCGHTFHSHCIVQDL 120 (233)
Q Consensus 89 ~C~~C~~~L~~~~f~vF-pCgH~FH~~CL~~~~ 120 (233)
.|.+|++.-....++.= .|..+||..||..-+
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl 52 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPL 52 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCc
Confidence 57788875322233322 399999999998544
No 161
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=46.01 E-value=6.7 Score=31.48 Aligned_cols=65 Identities=15% Similarity=0.341 Sum_probs=37.0
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhhhhcC--ChHH-Hhhcccccc-chhhHhhhhhCCCCCCChh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL--DPEQ-KAKLDSEET-GSEAVNNYLSRECPYCGSH 152 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~--~~~~-~~~l~~~~t-~~~eld~ila~eCPlCG~~ 152 (233)
...|..|+++|.. ..++-.-|..||..|+.=.. .+-. .....+... =..-.....+..|..|+..
T Consensus 60 ~~~C~~C~~~I~~-~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~kC~~C~~~ 128 (182)
T 2jtn_A 60 IPMCAGCDQHILD-RFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLG 128 (182)
T ss_dssp CCBCBTSSSBCCC-SEEEEETTEEECSSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTTSCCCTTTCCC
T ss_pred CCcCccCCCCccC-ceeEEecCCeEccccCccCCCCCccCCCceeECCEeeecCccccccccccccCCCc
Confidence 4689999999964 55555679999999986322 0000 000000000 0233344556788888863
No 162
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=45.79 E-value=9.7 Score=25.48 Aligned_cols=33 Identities=24% Similarity=0.620 Sum_probs=24.4
Q ss_pred CCchhhhhhccCCCCeEEe--cCCCccchhhhhhc
Q psy7337 87 CDTCLLCEVQLVSNTFYIF--PCGHTFHSHCIVQD 119 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vF--pCgH~FH~~CL~~~ 119 (233)
...|.+|+++.....+.+. .|..-||..|+.-.
T Consensus 6 ~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~ 40 (64)
T 1we9_A 6 SGQCGACGESYAADEFWICCDLCEMWFHGKCVKIT 40 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCC
T ss_pred CCCCCCCCCccCCCCCEEEccCCCCCCCccccCcC
Confidence 3579999998743445544 49999999999654
No 163
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=45.38 E-value=8.4 Score=28.75 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=35.7
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhhhhcC--ChHHH-hhcccccc--chhhHhhhhhCCCCCCChhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL--DPEQK-AKLDSEET--GSEAVNNYLSRECPYCGSHM 153 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~--~~~~~-~~l~~~~t--~~~eld~ila~eCPlCG~~~ 153 (233)
..|+.|+++|.... ++-.=|..||..|+.=.. .+-.. ........ =..-.....+..|.-||.++
T Consensus 4 ~~C~~C~~~I~~~~-~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~~C~~C~~~I 73 (126)
T 2xqn_T 4 PRCAGCDELIFSNE-YTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAVVCQGCHNAI 73 (126)
T ss_dssp CBBTTTSSBCCSSC-EEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCCBCTTTCSBC
T ss_pred CCCccCCCEeCCce-EEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCccCcccCCcC
Confidence 57999999986544 444568889998886332 00000 00000000 03333445568899998743
No 164
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.23 E-value=7 Score=27.79 Aligned_cols=33 Identities=21% Similarity=0.504 Sum_probs=22.3
Q ss_pred CchhhhhhccCCCCeEEe-cCCCccchhhhhhcC
Q psy7337 88 DTCLLCEVQLVSNTFYIF-PCGHTFHSHCIVQDL 120 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vF-pCgH~FH~~CL~~~~ 120 (233)
..|.+|++.-....++.= .|..+||..||..-+
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl 60 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPL 60 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCc
Confidence 468889876423333332 399999999998543
No 165
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=45.04 E-value=21 Score=30.77 Aligned_cols=71 Identities=14% Similarity=0.181 Sum_probs=48.3
Q ss_pred HHHHHhhc--CCCChhhhhh--------cCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7337 10 ALEFLDES--DLISIEDILP--------FFSDFTCMDQFKHAICASLEQYNQHIVDLKEDMSEATRSAEQVRNDIQACAN 79 (233)
Q Consensus 10 al~~l~es--~~L~ieDLLp--------~fpd~v~I~~fKd~I~~sL~ey~~~Ie~lk~eie~~~~~~~~l~~el~~l~~ 79 (233)
+-+++..+ +-+++.||+. +|+..+..-.||+.....+++.-.+.+.+..+++....+...++.+|++++.
T Consensus 97 l~~~l~~~gv~DFtl~DL~kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~ 176 (250)
T 2ve7_C 97 LDSFLPICRVNDFETADILCPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEK 176 (250)
T ss_dssp HHHHHHHTTCCCCCHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC----
T ss_pred HHHHHHHcCCCCCcHhHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566776 4688888863 3444455567888888888888888888888888888877777777777655
Q ss_pred C
Q psy7337 80 R 80 (233)
Q Consensus 80 r 80 (233)
.
T Consensus 177 e 177 (250)
T 2ve7_C 177 E 177 (250)
T ss_dssp -
T ss_pred H
Confidence 4
No 166
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=44.53 E-value=5.2 Score=32.17 Aligned_cols=29 Identities=17% Similarity=0.505 Sum_probs=14.8
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL 116 (233)
.+|..|+++|.....++-.=|+.||..|+
T Consensus 120 ~kC~~C~~~I~~~~~v~~a~~~~~H~~CF 148 (182)
T 2jtn_A 120 TKCAACQLGIPPTQVVRRAQDFVYHLHCF 148 (182)
T ss_dssp CCCTTTCCCCCSSCCCCEETTEECCTTTC
T ss_pred cccccCCCccCCCceEEecCCCCEEeCCC
Confidence 35666666654433333334556666654
No 167
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=43.91 E-value=15 Score=23.11 Aligned_cols=32 Identities=22% Similarity=0.394 Sum_probs=24.6
Q ss_pred CCchhhhhhccCC--CC-eEEecCCCccchhhhhh
Q psy7337 87 CDTCLLCEVQLVS--NT-FYIFPCGHTFHSHCIVQ 118 (233)
Q Consensus 87 ~~~C~~C~~~L~~--~~-f~vFpCgH~FH~~CL~~ 118 (233)
-..|..|+..|.+ .+ +.--.|+-.+|..|...
T Consensus 11 pt~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~ 45 (50)
T 1ptq_A 11 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK 45 (50)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred CCCcCCCCceeeccCCccCEeCCCCCeECHHHhhh
Confidence 3679999999974 33 44445999999999864
No 168
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=43.30 E-value=20 Score=25.97 Aligned_cols=42 Identities=10% Similarity=0.189 Sum_probs=30.2
Q ss_pred hhHHHHHHHHhh-----c-CCCChhhhhhcCCCccchhhHHHHH-HHHH
Q psy7337 5 NDIKTALEFLDE-----S-DLISIEDILPFFSDFTCMDQFKHAI-CASL 46 (233)
Q Consensus 5 ~dI~~al~~l~e-----s-~~L~ieDLLp~fpd~v~I~~fKd~I-~~sL 46 (233)
.-+..|+++++. . ..|+++|||..++..-.=..+|..+ .+.|
T Consensus 11 ~~lakiV~~mK~rh~~g~~~PltL~EILde~~~~d~~~~~k~wL~~eaL 59 (81)
T 1d8j_A 11 GVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEAL 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHTCCSCBCHHHHHHHHTCSSCCHHHHHHHHTTHH
T ss_pred ehHHHHHHHHHHhhccCCCCCccHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 457899999996 4 7999999999988544434556555 4333
No 169
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=43.02 E-value=96 Score=23.97 Aligned_cols=46 Identities=7% Similarity=0.157 Sum_probs=22.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7337 34 CMDQFKHAICASLEQYNQHIVDLKEDMSEATRSAEQVRNDIQACAN 79 (233)
Q Consensus 34 ~I~~fKd~I~~sL~ey~~~Ie~lk~eie~~~~~~~~l~~el~~l~~ 79 (233)
|+-.+++.|-+.-..-..+++.++.+|....+...+...++++++.
T Consensus 54 TV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 54 TVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444554444332222333555666666655555555555555544
No 170
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=42.88 E-value=9.6 Score=28.70 Aligned_cols=33 Identities=18% Similarity=0.568 Sum_probs=22.8
Q ss_pred CchhhhhhccCCCCeE-EecCCCccchhhhhhcC
Q psy7337 88 DTCLLCEVQLVSNTFY-IFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~-vFpCgH~FH~~CL~~~~ 120 (233)
..|.+|+..-....++ --.|..+||..||..-+
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl 92 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPV 92 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCC
T ss_pred CccCcccccCCCCceEEcCCCCccccccccCCCc
Confidence 3688999875333332 23499999999998544
No 171
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=42.65 E-value=7.8 Score=26.65 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=23.4
Q ss_pred hCCCCCCChhhhhhhhccCCCCCCCchhhh
Q psy7337 143 SRECPYCGSHMIEKESKKEGGDGGGTEEKT 172 (233)
Q Consensus 143 a~eCPlCG~~~i~~Id~pf~~~~~~~ee~~ 172 (233)
...||.||......-=..|.+++.+..-+-
T Consensus 17 k~~CP~CG~~t~~ahParfSP~Dky~~yR~ 46 (60)
T 2aus_D 17 KETCPVCGEKTKVAHPPRFSPEDPYGEYRR 46 (60)
T ss_dssp SSBCTTTCSBCEESSCCCCCSCCTTHHHHH
T ss_pred cccCcCCCCccCCCCCCCCCCCCchHHHHH
Confidence 467999999888777778888777766653
No 172
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=42.38 E-value=8.4 Score=27.71 Aligned_cols=31 Identities=13% Similarity=0.466 Sum_probs=23.2
Q ss_pred CchhhhhhccCCCC-eEEecCCCccchhhhhh
Q psy7337 88 DTCLLCEVQLVSNT-FYIFPCGHTFHSHCIVQ 118 (233)
Q Consensus 88 ~~C~~C~~~L~~~~-f~vFpCgH~FH~~CL~~ 118 (233)
-.|++|.......+ .+-..|||+|=..|+..
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence 46999996532333 33488999999999987
No 173
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=41.77 E-value=72 Score=22.83 Aligned_cols=44 Identities=7% Similarity=0.158 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7337 35 MDQFKHAICASLEQYNQHIVDLKEDMSEATRSAEQVRNDIQACA 78 (233)
Q Consensus 35 I~~fKd~I~~sL~ey~~~Ie~lk~eie~~~~~~~~l~~el~~l~ 78 (233)
++.+|+.++.-+++-..+-+.++.++....+....+...+..+.
T Consensus 28 Lnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elE 71 (77)
T 2w83_C 28 LNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELE 71 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999988888899888888877777766655543
No 174
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=39.50 E-value=44 Score=19.68 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7337 52 HIVDLKEDMSEATRSAEQVRNDIQACANR 80 (233)
Q Consensus 52 ~Ie~lk~eie~~~~~~~~l~~el~~l~~r 80 (233)
+|..++++|....+++..++=+|..+++.
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 35556666666666666666666666543
No 175
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.30 E-value=6.5 Score=28.79 Aligned_cols=34 Identities=18% Similarity=0.545 Sum_probs=22.8
Q ss_pred CCchhhhhhccCCCCeEEe-cCCCccchhhhhhcC
Q psy7337 87 CDTCLLCEVQLVSNTFYIF-PCGHTFHSHCIVQDL 120 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vF-pCgH~FH~~CL~~~~ 120 (233)
...|.+|+..-....++.= .|...||..||..-+
T Consensus 16 ~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl 50 (92)
T 2e6r_A 16 SYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPL 50 (92)
T ss_dssp CCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCC
T ss_pred CCCCccCCCcCCCCCEEEcCCCCchhccccCCCCc
Confidence 4579999987421222222 399999999997443
No 176
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=39.20 E-value=24 Score=31.48 Aligned_cols=32 Identities=19% Similarity=0.587 Sum_probs=24.1
Q ss_pred CCchhhhhhccCC--CC-eEEecCCCccchhhhhh
Q psy7337 87 CDTCLLCEVQLVS--NT-FYIFPCGHTFHSHCIVQ 118 (233)
Q Consensus 87 ~~~C~~C~~~L~~--~~-f~vFpCgH~FH~~CL~~ 118 (233)
...|..|+..+.+ .+ +-.=.||..+|..|...
T Consensus 357 ~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 357 TTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 4679999999853 34 34444999999999864
No 177
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=38.92 E-value=18 Score=26.97 Aligned_cols=32 Identities=19% Similarity=0.469 Sum_probs=23.9
Q ss_pred CCchhhhhhccCCC-CeEEe--cCCCccchhhhhh
Q psy7337 87 CDTCLLCEVQLVSN-TFYIF--PCGHTFHSHCIVQ 118 (233)
Q Consensus 87 ~~~C~~C~~~L~~~-~f~vF--pCgH~FH~~CL~~ 118 (233)
...|.+|+++.... .++.- .|.--||..|+.-
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVgl 37 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGM 37 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTC
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCc
Confidence 35799999997443 45544 5899999999853
No 178
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=38.26 E-value=12 Score=27.95 Aligned_cols=33 Identities=27% Similarity=0.532 Sum_probs=21.9
Q ss_pred CchhhhhhccCCC-C-eEEecCCCccchhhhhhcC
Q psy7337 88 DTCLLCEVQLVSN-T-FYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 88 ~~C~~C~~~L~~~-~-f~vFpCgH~FH~~CL~~~~ 120 (233)
..|.+|+..-... . +.--.|..+||..||...+
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l 96 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPL 96 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCC
Confidence 4688998753222 2 2233499999999997544
No 179
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=37.86 E-value=9.4 Score=28.05 Aligned_cols=33 Identities=21% Similarity=0.566 Sum_probs=22.9
Q ss_pred CCCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 86 NCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 86 ~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
.+..|.+|+.. +.-+.-=.|--+||..|+..-+
T Consensus 24 n~~~C~vC~~~--g~LL~CD~C~~~fH~~Cl~PpL 56 (88)
T 1fp0_A 24 SATICRVCQKP--GDLVMCNQCEFCFHLDCHLPAL 56 (88)
T ss_dssp SSSCCSSSCSS--SCCEECTTSSCEECTTSSSTTC
T ss_pred CCCcCcCcCCC--CCEEECCCCCCceecccCCCCC
Confidence 45689999986 3222222399999999997654
No 180
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=37.13 E-value=16 Score=25.58 Aligned_cols=30 Identities=23% Similarity=0.469 Sum_probs=23.5
Q ss_pred CchhhhhhccCCCCeEEe----cCCCccchhhhhhc
Q psy7337 88 DTCLLCEVQLVSNTFYIF----PCGHTFHSHCIVQD 119 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vF----pCgH~FH~~CL~~~ 119 (233)
..| +|+++- ...+.+. .|..-||..|+.-.
T Consensus 17 ~~C-iC~~~~-~~g~MI~CD~~~C~~W~H~~CVgi~ 50 (78)
T 1wew_A 17 VRC-VCGNSL-ETDSMIQCEDPRCHVWQHVGCVILP 50 (78)
T ss_dssp CCC-SSCCCC-CCSCEEECSSTTTCCEEEHHHHSCC
T ss_pred EEe-ECCCcC-CCCCEEEECCccCCccccCEEEccc
Confidence 568 799995 4456666 79999999999643
No 181
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=37.07 E-value=8.7 Score=31.09 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=36.6
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhhhhcC-C-hH-HHhhcccccc--chhhHhhhhhCCCCCCChh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL-D-PE-QKAKLDSEET--GSEAVNNYLSRECPYCGSH 152 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~-~-~~-~~~~l~~~~t--~~~eld~ila~eCPlCG~~ 152 (233)
..|+.|+++|.....+. .=|..||..|+.=.. . +- .......... =..-.....+..|.-||..
T Consensus 116 ~~C~~C~~~I~~~~~v~-a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~~kc~~C~~~ 184 (192)
T 1b8t_A 116 DGCPRCGQAVYAAEKVI-GAGKSWHKSCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNFGPKGFGFGQG 184 (192)
T ss_dssp EECTTTSCEECSSSCEE-ETTEEECTTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTCCCCCCCCCC
T ss_pred CcCCCCCCEecCcEEEe-cCCCccchhcCCccccCCCCCCCcccccCCEEeCHHHHHHhcCCcCCCCCCc
Confidence 46999999997666555 459999999976322 0 00 0000000000 0344455667888888863
No 182
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=35.90 E-value=11 Score=26.83 Aligned_cols=31 Identities=26% Similarity=0.563 Sum_probs=19.7
Q ss_pred chhhhhhccCCCCeEEe--cCCCccchhhhhhcC
Q psy7337 89 TCLLCEVQLVSNTFYIF--PCGHTFHSHCIVQDL 120 (233)
Q Consensus 89 ~C~~C~~~L~~~~f~vF--pCgH~FH~~CL~~~~ 120 (233)
.|.+|++.-.. ..+++ .|..+||..||..-+
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL 60 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPL 60 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCC
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcc
Confidence 46666665322 23333 299999999998554
No 183
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=35.55 E-value=15 Score=23.66 Aligned_cols=31 Identities=16% Similarity=0.368 Sum_probs=23.5
Q ss_pred chhhhhhccCCCCeEEe---cCCCccchhhhhhc
Q psy7337 89 TCLLCEVQLVSNTFYIF---PCGHTFHSHCIVQD 119 (233)
Q Consensus 89 ~C~~C~~~L~~~~f~vF---pCgH~FH~~CL~~~ 119 (233)
.|.+|++|-....+.+. .|.-=||..|+.-.
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~ 37 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVS 37 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCC
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCC
Confidence 47899999754555555 68999999998643
No 184
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=35.02 E-value=9.6 Score=30.82 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=23.9
Q ss_pred CCCchhhhhhccCCCCeEEecCCCccchhhhhh
Q psy7337 86 NCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQ 118 (233)
Q Consensus 86 ~~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~ 118 (233)
....|..|+++|.....+ ..-|..||..|+.=
T Consensus 6 ~~~~C~~C~~~I~~~~~v-~a~g~~wH~~CF~C 37 (192)
T 1b8t_A 6 GGKKCGVCQKAVYFAEEV-QCEGSSFHKSCFLC 37 (192)
T ss_dssp CCEECTTTCCEECSSCCE-EETTEEECTTTCBC
T ss_pred CCCcCccCCCeecceeEE-EeCCceecCCCCcC
Confidence 346799999999645444 45789999999873
No 185
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=34.13 E-value=24 Score=23.56 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=24.7
Q ss_pred CCchhhhhhccCC--CC-eEEecCCCccchhhhhhc
Q psy7337 87 CDTCLLCEVQLVS--NT-FYIFPCGHTFHSHCIVQD 119 (233)
Q Consensus 87 ~~~C~~C~~~L~~--~~-f~vFpCgH~FH~~CL~~~ 119 (233)
-..|..|+..|.+ .+ +.--.|+-.+|..|...-
T Consensus 20 pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v 55 (65)
T 3uej_A 20 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKV 55 (65)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTTS
T ss_pred CCcccccChhhhccCceeeECCCCCCeEchhHhhhC
Confidence 3679999999864 33 334459999999998653
No 186
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=33.54 E-value=65 Score=22.03 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=22.5
Q ss_pred hHHHHHHHHhhcCCCChhhhhhcCCCcc
Q psy7337 6 DIKTALEFLDESDLISIEDILPFFSDFT 33 (233)
Q Consensus 6 dI~~al~~l~es~~L~ieDLLp~fpd~v 33 (233)
.+++++..-++.|.|+..+|..+||+..
T Consensus 10 ~~k~Li~~gK~~G~lTy~EI~d~l~~~~ 37 (72)
T 2k6x_A 10 RIKKLISLGKKKGYITYEDIDKAFPPDF 37 (72)
T ss_dssp HHHHHHHHHHHHSSCBHHHHHHHCSCSC
T ss_pred HHHHHHHHHhHcCCccHHHHHHhCcccc
Confidence 4666777667779999999999999753
No 187
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=33.51 E-value=9.5 Score=37.53 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=18.0
Q ss_pred hhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChhh
Q psy7337 113 SHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSHM 153 (233)
Q Consensus 113 ~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~~ 153 (233)
.+|..++-+|..|+...+ ...||.||...
T Consensus 71 ~~C~~EY~dp~dRRfHAq------------p~aCp~CGP~l 99 (657)
T 3ttc_A 71 PACDKEYRDPLDRRFHAQ------------PVACPECGPYL 99 (657)
T ss_dssp HHHHHHHHCTTSTTTTCT------------TCCCTTTSCCE
T ss_pred hHHHHHhCCCCCCcCcCC------------CCcCcccCccc
Confidence 345555555544544444 47999999853
No 188
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=33.29 E-value=9.1 Score=24.40 Aligned_cols=30 Identities=37% Similarity=0.813 Sum_probs=23.9
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhhhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQ 118 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~ 118 (233)
..|..|++.|. ..+.--.|+-.+|..|...
T Consensus 15 t~C~~C~~~l~-qG~~C~~C~~~~H~~C~~~ 44 (52)
T 1faq_A 15 AFCDICQKFLL-NGFRCQTCGYKFHEHCSTK 44 (52)
T ss_dssp EECTTSSSEEC-SEEECTTTTCCBCSTTSSS
T ss_pred cCCCCcccccc-cCCEeCCCCCeEChhHHhh
Confidence 67999999986 4444455999999999864
No 189
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.11 E-value=19 Score=25.47 Aligned_cols=33 Identities=18% Similarity=0.422 Sum_probs=25.1
Q ss_pred CCchhhhhhccCC--CC-eEEecCCCccchhhhhhc
Q psy7337 87 CDTCLLCEVQLVS--NT-FYIFPCGHTFHSHCIVQD 119 (233)
Q Consensus 87 ~~~C~~C~~~L~~--~~-f~vFpCgH~FH~~CL~~~ 119 (233)
-..|.+|+..|.+ .+ +..-.|+-.+|..|...-
T Consensus 28 pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~~v 63 (83)
T 2yuu_A 28 PTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDKI 63 (83)
T ss_dssp CCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGGTC
T ss_pred CcChhhcChhhccccccccccCCcCCeeChhhhhhC
Confidence 3679999999964 33 444559999999998653
No 190
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=32.97 E-value=93 Score=20.18 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7337 53 IVDLKEDMSEATRSAEQVRNDIQAC 77 (233)
Q Consensus 53 Ie~lk~eie~~~~~~~~l~~el~~l 77 (233)
++.++..+.....+...++.+|..+
T Consensus 28 ~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 28 FLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 191
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=31.29 E-value=1.4e+02 Score=21.24 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=30.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7337 34 CMDQFKHAICASLEQYNQHIVDLKEDMSEATRSAEQVRNDIQ 75 (233)
Q Consensus 34 ~I~~fKd~I~~sL~ey~~~Ie~lk~eie~~~~~~~~l~~el~ 75 (233)
+.+..+..|-+.++.....|..+...++........++..|.
T Consensus 62 ~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 62 AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777777777777777766666666554
No 192
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=31.28 E-value=8.6 Score=25.09 Aligned_cols=29 Identities=17% Similarity=0.484 Sum_probs=23.9
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCIV 117 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~ 117 (233)
..|..|++.|+. .+.--.|+-.+|.+|..
T Consensus 15 t~C~~C~k~i~~-G~kC~~Ck~~cH~kC~~ 43 (49)
T 1kbe_A 15 QVCNVCQKSMIF-GVKCKHCRLKCHNKCTK 43 (49)
T ss_dssp CCCSSSCCSSCC-EEEETTTTEEESSSCTT
T ss_pred cCccccCceeEC-cCCCCCCCCccchhhcC
Confidence 689999999973 35555699999999986
No 193
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=30.64 E-value=21 Score=23.72 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=24.2
Q ss_pred CchhhhhhccCCCCeEEecCCCccchhhhhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQ 118 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~ 118 (233)
..|..|+..|....+---.||-..|..|...
T Consensus 23 t~C~~C~~~i~kqg~kC~~C~~~cH~kC~~~ 53 (59)
T 1rfh_A 23 GWCDLCGREVLRQALRCANCKFTCHSECRSL 53 (59)
T ss_dssp EECTTTCSEECSCCEECTTTSCEECHHHHTT
T ss_pred eEchhcchhhhhCccEeCCCCCeEehhhhhh
Confidence 6799999999444455555999999999854
No 194
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=30.54 E-value=19 Score=26.41 Aligned_cols=31 Identities=19% Similarity=0.424 Sum_probs=21.8
Q ss_pred CchhhhhhccCCCCeEEec-CCCccchhhhhhc
Q psy7337 88 DTCLLCEVQLVSNTFYIFP-CGHTFHSHCIVQD 119 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFp-CgH~FH~~CL~~~ 119 (233)
.+| +|+.+-....++.=- |.-.||..|+.-.
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~ 60 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMGID 60 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCC
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCC
Confidence 468 899886444433333 9999999999653
No 195
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.74 E-value=1.6e+02 Score=21.27 Aligned_cols=46 Identities=11% Similarity=0.170 Sum_probs=38.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7337 34 CMDQFKHAICASLEQYNQHIVDLKEDMSEATRSAEQVRNDIQACAN 79 (233)
Q Consensus 34 ~I~~fKd~I~~sL~ey~~~Ie~lk~eie~~~~~~~~l~~el~~l~~ 79 (233)
+.+.....|-+.++.....|..+...++........++..+.....
T Consensus 67 ~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 67 TKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5678888888888888888888888888888888888888877654
No 196
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=28.45 E-value=29 Score=23.24 Aligned_cols=31 Identities=23% Similarity=0.488 Sum_probs=24.3
Q ss_pred CchhhhhhccCC--CC-eEEecCCCccchhhhhh
Q psy7337 88 DTCLLCEVQLVS--NT-FYIFPCGHTFHSHCIVQ 118 (233)
Q Consensus 88 ~~C~~C~~~L~~--~~-f~vFpCgH~FH~~CL~~ 118 (233)
..|..|+..|.+ .+ +.-=.|+-.+|..|...
T Consensus 24 t~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 57 (65)
T 2enz_A 24 TFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTK 57 (65)
T ss_dssp CBCSSSCCBCCCSSSCSEEESSSCCEECTTTTTT
T ss_pred cCchhcChhheecCCcccccCCCCCccCHhHHhh
Confidence 679999999874 33 44445999999999865
No 197
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=28.26 E-value=35 Score=23.62 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=24.2
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhhhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQ 118 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~ 118 (233)
-..|..|+..|....+-.=-||-..|..|...
T Consensus 35 pt~C~~C~~~l~~qG~kC~~C~~~cHkkC~~~ 66 (72)
T 2fnf_X 35 PGWCDLCGREVLRQALRCANCKFTCHSECRSL 66 (72)
T ss_dssp CCBCTTTSSBCSSCCEECTTSSCEECTGGGGG
T ss_pred CcchhhhhHHHHhCcCccCCCCCeechhhhcc
Confidence 36799999999333344445999999999854
No 198
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=28.25 E-value=23 Score=24.57 Aligned_cols=29 Identities=28% Similarity=0.638 Sum_probs=21.7
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhhhhc
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQD 119 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~ 119 (233)
..+|..|++.+...+|-- .||..| |..-.
T Consensus 15 ~~rC~~C~kkvgl~~f~C-rCg~~F---C~~HR 43 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKC-KCGSTF---CGSHR 43 (64)
T ss_dssp SCSCTTTCCCCTTSCEEC-TTSCEE---CSSSC
T ss_pred CCcChhhCCcccccCeEe-ecCCEe---cccCC
Confidence 378999999985456766 799999 65543
No 199
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=28.16 E-value=33 Score=25.49 Aligned_cols=49 Identities=20% Similarity=0.496 Sum_probs=35.7
Q ss_pred CCCchhhhhhccC----CCCeEEec-CCCccchhhhhhcCChHHHhhccccccchhhHhhhhhCCCCCCChhh
Q psy7337 86 NCDTCLLCEVQLV----SNTFYIFP-CGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSHM 153 (233)
Q Consensus 86 ~~~~C~~C~~~L~----~~~f~vFp-CgH~FH~~CL~~~~~~~~~~~l~~~~t~~~eld~ila~eCPlCG~~~ 153 (233)
..+.|.+|+..+- +.+|+.-. |+--.-+.|...+. .--...||-|+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr-------------------keG~q~CpqCktrY 68 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER-------------------REGTQNCPQCKTRY 68 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH-------------------HTSCSSCTTTCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHH-------------------hccCccccccCCcc
Confidence 3478999999975 34677666 99889999987653 01137999999743
No 200
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=27.98 E-value=1.2e+02 Score=21.13 Aligned_cols=42 Identities=14% Similarity=0.379 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7337 38 FKHAICASLEQYNQHIVDLKEDMSEATRSAEQVRNDIQACAN 79 (233)
Q Consensus 38 fKd~I~~sL~ey~~~Ie~lk~eie~~~~~~~~l~~el~~l~~ 79 (233)
.-+++.+.|..-...|..++..+......+..++.++.+++.
T Consensus 12 ~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 12 LEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777778888888888888888888888887754
No 201
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=27.87 E-value=12 Score=28.44 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=16.2
Q ss_pred HHHHHHHhhcCCCChhhhhhcCCC
Q psy7337 8 KTALEFLDESDLISIEDILPFFSD 31 (233)
Q Consensus 8 ~~al~~l~es~~L~ieDLLp~fpd 31 (233)
++++++|.+ +.++..+|...+.-
T Consensus 14 e~Ii~lL~~-~plta~ei~~~l~i 36 (105)
T 2gmg_A 14 EKIIELLLE-GDYSPSELARILDM 36 (105)
T ss_dssp HHHHHHTTT-SCBCTTHHHHSSCC
T ss_pred HHHHHHHHc-CCCCHHHHHHHhCC
Confidence 456667764 67888888877763
No 202
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=27.20 E-value=25 Score=24.36 Aligned_cols=30 Identities=27% Similarity=0.638 Sum_probs=22.2
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
..+|..|++.+...+|-- .||..| |..-..
T Consensus 15 ~~rC~~C~kkvgl~~f~C-rCg~~F---C~~HRy 44 (64)
T 1wfh_A 15 PNRCTVCRKRVGLTGFMC-RCGTTF---CGSHRY 44 (64)
T ss_dssp CCCCTTTCCCCCTTCEEC-SSSCEE---CTTTCS
T ss_pred CCcChhhCCccCccCEEe-ecCCEe---ccccCC
Confidence 378999999985556766 699999 655443
No 203
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=26.93 E-value=2e+02 Score=21.63 Aligned_cols=17 Identities=6% Similarity=0.081 Sum_probs=10.9
Q ss_pred HHhhcCCCChhhhhhcCC
Q psy7337 13 FLDESDLISIEDILPFFS 30 (233)
Q Consensus 13 ~l~es~~L~ieDLLp~fp 30 (233)
.+++.| +++++|-.++.
T Consensus 52 ~lr~~G-~sl~eI~~~l~ 68 (135)
T 1q06_A 52 QARQVG-FNLEESGELVN 68 (135)
T ss_dssp HHHHTT-CCHHHHHHHHH
T ss_pred HHHHCC-CCHHHHHHHHH
Confidence 344444 78888777773
No 204
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=26.92 E-value=25 Score=25.42 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=23.2
Q ss_pred CchhhhhhccCCCCeE-EecCCCccchhhhhhc
Q psy7337 88 DTCLLCEVQLVSNTFY-IFPCGHTFHSHCIVQD 119 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~-vFpCgH~FH~~CL~~~ 119 (233)
..|..|++... .-|| -..|+-.+|..|....
T Consensus 48 ~~C~~C~~~~~-~~~Y~C~~C~f~lH~~Ca~~p 79 (89)
T 1v5n_A 48 YTCDKCEEEGT-IWSYHCDECDFDLHAKCALNE 79 (89)
T ss_dssp CCCTTTSCCCC-SCEEECTTTCCCCCHHHHHCS
T ss_pred eEeCCCCCcCC-CcEEEcCCCCCeEcHHhcCCC
Confidence 57999999863 3334 3359999999998643
No 205
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=26.24 E-value=33 Score=27.11 Aligned_cols=30 Identities=27% Similarity=0.644 Sum_probs=21.7
Q ss_pred CCchhhhhhccCCCCeEEe--cCCCccchhhhh
Q psy7337 87 CDTCLLCEVQLVSNTFYIF--PCGHTFHSHCIV 117 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vF--pCgH~FH~~CL~ 117 (233)
...| +|+++--...+.+. .|...||..|+.
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~ 39 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVG 39 (174)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHT
T ss_pred CcEe-eCCCCCCCCCCEeECCCCCchhChhhcC
Confidence 3569 99998533444444 399999999995
No 206
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=26.10 E-value=32 Score=34.33 Aligned_cols=55 Identities=24% Similarity=0.482 Sum_probs=35.3
Q ss_pred CCchhhhhhccCC-------CCeEEec-CCCcc--------------------chhhhhhcCChHHHhhccccccchhhH
Q psy7337 87 CDTCLLCEVQLVS-------NTFYIFP-CGHTF--------------------HSHCIVQDLDPEQKAKLDSEETGSEAV 138 (233)
Q Consensus 87 ~~~C~~C~~~L~~-------~~f~vFp-CgH~F--------------------H~~CL~~~~~~~~~~~l~~~~t~~~el 138 (233)
-..|.-|.+-|++ .||+--. ||=-| -.+|..++-+|..|+...+
T Consensus 111 ~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAq-------- 182 (761)
T 3vth_A 111 MGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQ-------- 182 (761)
T ss_dssp BCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCT--------
T ss_pred ccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCC--------
Confidence 3568888888863 2333222 66433 3567777776666666655
Q ss_pred hhhhhCCCCCCChhh
Q psy7337 139 NNYLSRECPYCGSHM 153 (233)
Q Consensus 139 d~ila~eCPlCG~~~ 153 (233)
...||.||...
T Consensus 183 ----p~aC~~CGP~l 193 (761)
T 3vth_A 183 ----PVACFDCGPSL 193 (761)
T ss_dssp ----TCCCTTTSCCE
T ss_pred ----CCcCCccCCee
Confidence 37999999843
No 207
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=26.06 E-value=17 Score=31.18 Aligned_cols=32 Identities=25% Similarity=0.566 Sum_probs=18.6
Q ss_pred chhhhhhccCCCCeEEe-cCCCccchhhhhhcC
Q psy7337 89 TCLLCEVQLVSNTFYIF-PCGHTFHSHCIVQDL 120 (233)
Q Consensus 89 ~C~~C~~~L~~~~f~vF-pCgH~FH~~CL~~~~ 120 (233)
.|.+|+..=....++.- .|..+||..||..-+
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL 208 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPL 208 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCC
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCc
Confidence 58888875322222222 499999999998544
No 208
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=24.88 E-value=2.2e+02 Score=21.24 Aligned_cols=46 Identities=7% Similarity=0.109 Sum_probs=35.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7337 34 CMDQFKHAICASLEQYNQHIVDLKEDMSEATRSAEQVRNDIQACAN 79 (233)
Q Consensus 34 ~I~~fKd~I~~sL~ey~~~Ie~lk~eie~~~~~~~~l~~el~~l~~ 79 (233)
+++.-++.+-+.++..+..++.+...+......+..+...|+++..
T Consensus 85 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 85 NFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677888888888888888888888888888777777777776643
No 209
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=24.87 E-value=26 Score=25.00 Aligned_cols=30 Identities=30% Similarity=0.678 Sum_probs=22.6
Q ss_pred CCchhhhhhccCCCCeEEecCCCccchhhhhhcC
Q psy7337 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 87 ~~~C~~C~~~L~~~~f~vFpCgH~FH~~CL~~~~ 120 (233)
..+|..|++.+...+|.. .||..| |..-.+
T Consensus 25 ~~RC~~C~kkvgL~~f~C-rCg~~F---Cs~HRy 54 (74)
T 1wfp_A 25 ATRCLSCNKKVGVTGFKC-RCGSTF---CGTHRY 54 (74)
T ss_dssp CCBCSSSCCBCTTTCEEC-TTSCEE---CTTTCS
T ss_pred CccchhhcCcccccceEe-ccCCEe---ccccCC
Confidence 368999999986556777 799999 665443
No 210
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=24.65 E-value=2.3e+02 Score=21.45 Aligned_cols=44 Identities=16% Similarity=0.278 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7337 35 MDQFKHAICASLEQYNQHIVDLKEDMSEATRSAEQVRNDIQACA 78 (233)
Q Consensus 35 I~~fKd~I~~sL~ey~~~Ie~lk~eie~~~~~~~~l~~el~~l~ 78 (233)
++.+|..+-.+-.+.+..+..++.++......-..++..|..+.
T Consensus 19 ~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLE 62 (111)
T 2v66_B 19 VEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELE 62 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777788888888887777777776666553
No 211
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=23.84 E-value=47 Score=22.22 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=24.8
Q ss_pred CCchhhhhhccCC--CCeEE-ecCCCccchhhhhhc
Q psy7337 87 CDTCLLCEVQLVS--NTFYI-FPCGHTFHSHCIVQD 119 (233)
Q Consensus 87 ~~~C~~C~~~L~~--~~f~v-FpCgH~FH~~CL~~~ 119 (233)
-..|..|+..|++ .+-|. =.|+-.+|..|...-
T Consensus 24 pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~v 59 (66)
T 1y8f_A 24 PTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDLL 59 (66)
T ss_dssp CCCCTTTCCCCCSSCCEEEEETTTCCEECTTHHHHS
T ss_pred CcChhhcChhhcccCcceeEcCCCCCeeCHHHHhhC
Confidence 3679999999975 34333 349999999998653
No 212
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=23.62 E-value=25 Score=23.95 Aligned_cols=30 Identities=20% Similarity=0.583 Sum_probs=21.8
Q ss_pred CchhhhhhccCCCCeEEec---CCCccchhhhhh
Q psy7337 88 DTCLLCEVQLVSNTFYIFP---CGHTFHSHCIVQ 118 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vFp---CgH~FH~~CL~~ 118 (233)
.+| +|+.+.....++.-- |..-||..|+.-
T Consensus 11 v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi 43 (68)
T 2rsd_A 11 VRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLI 43 (68)
T ss_dssp ECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCC
T ss_pred EEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCC
Confidence 358 799987555555552 999999999853
No 213
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=23.08 E-value=29 Score=25.35 Aligned_cols=29 Identities=28% Similarity=0.717 Sum_probs=22.2
Q ss_pred CchhhhhhccCCC-CeEEecCCCccchhhhhhcC
Q psy7337 88 DTCLLCEVQLVSN-TFYIFPCGHTFHSHCIVQDL 120 (233)
Q Consensus 88 ~~C~~C~~~L~~~-~f~vFpCgH~FH~~CL~~~~ 120 (233)
.+|..|++.+... +|-. .||+.| |..-.+
T Consensus 26 ~rC~~C~kkvgl~~~f~C-rCg~~F---C~~HRy 55 (85)
T 1wff_A 26 KHCFLCGKKTGLATSFEC-RCGNNF---CASHRY 55 (85)
T ss_dssp CBCSSSCCBCSSSSCEEC-TTCCEE---CTTTCS
T ss_pred ccchhhCCeecccCCeEc-CCCCEe---cccCCC
Confidence 6899999998543 7666 799999 665444
No 214
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.02 E-value=1.8e+02 Score=20.94 Aligned_cols=36 Identities=8% Similarity=0.244 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7337 45 SLEQYNQHIVDLKEDMSEATRSAEQVRNDIQACANR 80 (233)
Q Consensus 45 sL~ey~~~Ie~lk~eie~~~~~~~~l~~el~~l~~r 80 (233)
.+..+..++..+...+.........+..++..++.+
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~ 100 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDME 100 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666666555555443
No 215
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.91 E-value=35 Score=26.80 Aligned_cols=9 Identities=56% Similarity=1.269 Sum_probs=7.7
Q ss_pred CCCCCCChh
Q psy7337 144 RECPYCGSH 152 (233)
Q Consensus 144 ~eCPlCG~~ 152 (233)
..||.||..
T Consensus 149 ~~Cp~CG~~ 157 (165)
T 2lcq_A 149 GVCPDCGSK 157 (165)
T ss_dssp GBCTTTCCB
T ss_pred CcCCCCCCc
Confidence 489999986
No 216
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=22.86 E-value=45 Score=22.81 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=24.7
Q ss_pred CcccccCCCchhhhhhccCCCCeEEe-cCCCccchhhhhhc
Q psy7337 80 RYHMIQNCDTCLLCEVQLVSNTFYIF-PCGHTFHSHCIVQD 119 (233)
Q Consensus 80 r~~iI~~~~~C~~C~~~L~~~~f~vF-pCgH~FH~~CL~~~ 119 (233)
++..-.....| +|+++-.+..++-= .|+.-||..|+.-.
T Consensus 12 ~~~~~~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~ 51 (68)
T 3o70_A 12 ENLYFQGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIR 51 (68)
T ss_dssp --CTTTTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCC
T ss_pred ccCCCCCceEe-ECCCcCCCCCEEECCCCCccccccccCcC
Confidence 44444445679 99998643333332 39999999999643
No 217
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.72 E-value=29 Score=24.68 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=24.8
Q ss_pred CCchhhhhhccCC--CCeE-EecCCCccchhhhhhc
Q psy7337 87 CDTCLLCEVQLVS--NTFY-IFPCGHTFHSHCIVQD 119 (233)
Q Consensus 87 ~~~C~~C~~~L~~--~~f~-vFpCgH~FH~~CL~~~ 119 (233)
-..|..|+..|++ .+-| -=.|+-.+|..|...-
T Consensus 28 pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~v 63 (85)
T 2eli_A 28 PTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINV 63 (85)
T ss_dssp CCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTTS
T ss_pred CcCCcccCccccccccCCCcCCCcCCccCHhHHhhc
Confidence 3679999999975 3433 3449999999998653
No 218
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=22.11 E-value=2.9e+02 Score=23.91 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=14.9
Q ss_pred hhHHHHHHHHhhcCCCChhhhhhcC
Q psy7337 5 NDIKTALEFLDESDLISIEDILPFF 29 (233)
Q Consensus 5 ~dI~~al~~l~es~~L~ieDLLp~f 29 (233)
.+...+|+.|.+.|.+.+.|+-+-.
T Consensus 24 ~~~~~vl~~L~~lg~vhi~d~~~~~ 48 (357)
T 3rrk_A 24 RLARELLAELQKAGVVHIDPLRPDE 48 (357)
T ss_dssp GGHHHHHHHHHHHTCEEEEEECGGG
T ss_pred HHHHHHHHHHHHcCcEEEEeccccc
Confidence 4556666666666666666655443
No 219
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=21.54 E-value=1.7e+02 Score=18.81 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=18.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7337 33 TCMDQFKHAICASLEQYNQHIVDLKEDMS 61 (233)
Q Consensus 33 v~I~~fKd~I~~sL~ey~~~Ie~lk~eie 61 (233)
..++.||..| |++...++++.+++|=
T Consensus 7 ~dle~~KqEI---L~E~RkElqK~K~EII 32 (45)
T 1use_A 7 SDLQRVKQEL---LEEVKKELQKVKEEII 32 (45)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3467788777 5666777888887773
No 220
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=21.50 E-value=23 Score=26.05 Aligned_cols=9 Identities=56% Similarity=1.412 Sum_probs=7.5
Q ss_pred CCCCCCChh
Q psy7337 144 RECPYCGSH 152 (233)
Q Consensus 144 ~eCPlCG~~ 152 (233)
..||+||.+
T Consensus 9 ~~~PlCG~~ 17 (95)
T 2k5c_A 9 AKCPICGSP 17 (95)
T ss_dssp EECSSSCCE
T ss_pred ccCCcCCCc
Confidence 589999983
No 221
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=21.24 E-value=52 Score=22.56 Aligned_cols=29 Identities=31% Similarity=0.667 Sum_probs=21.0
Q ss_pred CchhhhhhccCCCCeEEe--cCCCccchhhhhh
Q psy7337 88 DTCLLCEVQLVSNTFYIF--PCGHTFHSHCIVQ 118 (233)
Q Consensus 88 ~~C~~C~~~L~~~~f~vF--pCgH~FH~~CL~~ 118 (233)
..| +|+++-. ..+.+. .|..-||..|+.-
T Consensus 17 ~~C-~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl 47 (76)
T 1wem_A 17 LYC-ICRQPHN-NRFMICCDRCEEWFHGDCVGI 47 (76)
T ss_dssp CCS-TTCCCCC-SSCEEECSSSCCEEEHHHHSC
T ss_pred CEE-ECCCccC-CCCEEEeCCCCCcEeCeEEcc
Confidence 457 8999874 334444 3999999999964
No 222
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=21.03 E-value=2.1e+02 Score=19.56 Aligned_cols=48 Identities=8% Similarity=0.165 Sum_probs=30.7
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7337 31 DFTCMDQFKHAICASLEQYNQHIVDLKEDMSEATRSAEQVRNDIQACAN 79 (233)
Q Consensus 31 d~v~I~~fKd~I~~sL~ey~~~Ie~lk~eie~~~~~~~~l~~el~~l~~ 79 (233)
+-+++..|- ++-+.|.....+|+++-+--.....+...+++.|++++.
T Consensus 8 gpit~qeyl-evK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 8 GAVTLQEYL-ELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp CSSCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHH-HHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 445666554 345666777777777665555556666666777777654
No 223
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=20.90 E-value=2.4e+02 Score=22.13 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=16.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q psy7337 34 CMDQFKHAICASLEQYNQHIVDLK 57 (233)
Q Consensus 34 ~I~~fKd~I~~sL~ey~~~Ie~lk 57 (233)
.+..||..|.....+...++....
T Consensus 36 ql~~fr~~L~~~k~eL~~~l~~~~ 59 (151)
T 1tjl_A 36 QLAHFRRILEAWRNQLRDEVDRTV 59 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888877777666665433
No 224
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.61 E-value=1.4e+02 Score=19.50 Aligned_cols=26 Identities=15% Similarity=0.187 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7337 53 IVDLKEDMSEATRSAEQVRNDIQACA 78 (233)
Q Consensus 53 Ie~lk~eie~~~~~~~~l~~el~~l~ 78 (233)
++.++.+..+.......++.+++.++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 225
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.57 E-value=19 Score=24.95 Aligned_cols=32 Identities=22% Similarity=0.404 Sum_probs=24.5
Q ss_pred CchhhhhhccCC---CCeEEecCCCccchhhhhhc
Q psy7337 88 DTCLLCEVQLVS---NTFYIFPCGHTFHSHCIVQD 119 (233)
Q Consensus 88 ~~C~~C~~~L~~---~~f~vFpCgH~FH~~CL~~~ 119 (233)
..|.+|+..|++ .-+.-=.|+-.+|..|...-
T Consensus 29 t~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~v 63 (74)
T 2db6_A 29 KFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSYV 63 (74)
T ss_dssp EECSSSCCEECHHHHEEEEESSSCCEECTTTTGGG
T ss_pred cCchhcChhhccccCCccccCCCCCccChhHHhhC
Confidence 679999999864 23444459999999998653
No 226
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=20.43 E-value=1.2e+02 Score=19.92 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=17.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7337 34 CMDQFKHAICASLEQYNQHIVDLKEDMSE 62 (233)
Q Consensus 34 ~I~~fKd~I~~sL~ey~~~Ie~lk~eie~ 62 (233)
.++.|=+.|.+.+..+..++..|+.++..
T Consensus 24 EVD~FLd~v~~~~~~l~~e~~~L~~~~~~ 52 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIVLRKKTELEAKVNE 52 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666655555543
No 227
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=20.41 E-value=2.1e+02 Score=19.40 Aligned_cols=11 Identities=36% Similarity=0.685 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q psy7337 49 YNQHIVDLKED 59 (233)
Q Consensus 49 y~~~Ie~lk~e 59 (233)
|+.+++.++..
T Consensus 33 y~~k~eel~~~ 43 (77)
T 3trt_A 33 YKSKFADLSEA 43 (77)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334333333
No 228
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=20.19 E-value=2.8e+02 Score=23.55 Aligned_cols=43 Identities=16% Similarity=0.321 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7337 36 DQFKHAICASLEQYNQHIVDLKEDMSEATRSAEQVRNDIQACA 78 (233)
Q Consensus 36 ~~fKd~I~~sL~ey~~~Ie~lk~eie~~~~~~~~l~~el~~l~ 78 (233)
..+|.+|...++.+..+...+.+.++..+.+...++..+.+.+
T Consensus 163 e~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~ 205 (228)
T 3q0x_A 163 SVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCR 205 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999888887777777666666655555555443
Done!