RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7337
(233 letters)
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 33.9 bits (78), Expect = 0.004
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 83 MIQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQ 118
M + C +C ++ SN PC H F CI +
Sbjct: 1 MATVAERCPIC-LEDPSNYSMALPCLHAFCYVCITR 35
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 34.0 bits (78), Expect = 0.005
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 84 IQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLD 121
+ C +C + + I C HTF CIV+
Sbjct: 12 LTPYILCSIC-KGYLIDATTITECLHTFCKSCIVRHFY 48
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, ring domain, zinc-binding domain, structural
genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Length = 55
Score = 31.9 bits (73), Expect = 0.015
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 106 PCGHTFHSHCIVQ 118
PCGH H C +
Sbjct: 26 PCGHLLHRTCYEE 38
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 32.2 bits (73), Expect = 0.022
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 86 NCDTCL--LCEVQLVSNTFYIFPCGHTFHSHCIVQ 118
+C C+ E+ CGH F S C+
Sbjct: 17 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD 51
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.6 bits (76), Expect = 0.028
Identities = 8/41 (19%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 177 ERVEKKPKALEK--EEREVKMEGKEMKEEEEDKDVVEKKRK 215
+R+ ++P+++ K EE+ +++ + + +++ EK +K
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKK 118
Score = 30.5 bits (68), Expect = 0.30
Identities = 8/48 (16%), Positives = 23/48 (47%)
Query: 168 TEEKTKVNDERVEKKPKALEKEEREVKMEGKEMKEEEEDKDVVEKKRK 215
T+E + R E++ + E + ME + ++ ++D + +++
Sbjct: 81 TQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS 128
Score = 28.2 bits (62), Expect = 1.6
Identities = 8/56 (14%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 155 EKESKKEGGDGGGTEEKTKVNDERVEKKPKALEKEEREVKMEGKEMKEEEEDKDVV 210
E ++ + + E+ K +E +++ + +EK + ++ K ++ + D++
Sbjct: 100 ELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA-DII 154
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural
genomics, PSI-2, protein struc initiative; NMR {Homo
sapiens}
Length = 91
Score = 31.9 bits (73), Expect = 0.031
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 106 PCGHTFHSHCIVQ 118
PC H FH C+
Sbjct: 60 PCHHYFHKPCVSI 72
>2ect_A Ring finger protein 126; metal binding protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 78
Score = 30.9 bits (70), Expect = 0.073
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 106 PCGHTFHSHCIV 117
PC H FH CIV
Sbjct: 35 PCNHLFHDSCIV 46
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 30.5 bits (69), Expect = 0.078
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 86 NCDTCL--LCEVQLVSNTFYIFPCGHTFHSHCIVQ 118
+C C+ E+ CGH F S C+
Sbjct: 5 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD 39
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 75
Score = 30.4 bits (69), Expect = 0.091
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 106 PCGHTFHSHCI 116
PC H FH+ C+
Sbjct: 43 PCNHEFHAKCV 53
>3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 197
Score = 32.0 bits (73), Expect = 0.10
Identities = 9/44 (20%), Positives = 23/44 (52%)
Query: 172 TKVNDERVEKKPKALEKEEREVKMEGKEMKEEEEDKDVVEKKRK 215
T + + ++ + + +E E++ VK E +++ + + KRK
Sbjct: 89 TPLLLKELKMEDERIEAEKQRVKEEAQQLAMVFQTVGAFKVKRK 132
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 32.5 bits (73), Expect = 0.11
Identities = 6/44 (13%), Positives = 12/44 (27%), Gaps = 9/44 (20%)
Query: 106 PCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYC 149
C H+ C+ + + +CP+C
Sbjct: 333 KCVLKCHAVCLEEWFK---------TLMDGKTFLEVSFGQCPFC 367
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 30.2 bits (68), Expect = 0.12
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 86 NCDTCL--LCEVQLVSNTFYIFPCGHTFHSHCIVQ 118
+C C+ E+ CGH F S C+
Sbjct: 12 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD 46
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 30.1 bits (68), Expect = 0.12
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 106 PCGHTFHSHCIVQ 118
PC H FH C+++
Sbjct: 35 PCKHAFHRKCLIK 47
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 30.6 bits (69), Expect = 0.16
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 84 IQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLD 121
+ C+LC + I C H+F CIV+ L+
Sbjct: 12 LNPHLMCVLC-GGYFIDATTIIECLHSFCKTCIVRYLE 48
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 31.7 bits (71), Expect = 0.17
Identities = 16/101 (15%), Positives = 26/101 (25%), Gaps = 25/101 (24%)
Query: 50 NQHIVDLKEDMSEATRSAEQVRNDIQACANRYH-MIQNCDTCLLCEVQLVSNTFYIFPCG 108
DL + +V + Q C C + + I PCG
Sbjct: 297 RNQNPDLTGLCEPTPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVK-----IEPCG 351
Query: 109 HTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYC 149
H + C+ + E + CP+C
Sbjct: 352 HLMCTSCLTSWQESE-------------------GQGCPFC 373
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 29.7 bits (67), Expect = 0.17
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 106 PCGHTFHSHCIVQ 118
PC H+F CI +
Sbjct: 31 PCAHSFCQKCIDK 43
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 29.5 bits (66), Expect = 0.21
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQ 118
C +C L+ CG H C+ +
Sbjct: 16 KICNICH-SLLIQGQSCETCGIRMHLPCVAK 45
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 29.5 bits (66), Expect = 0.24
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 88 DTCLLCEVQLVSNTFYIF--PCGHTFHSHCI 116
D CL C+ + + C H+FH+ C+
Sbjct: 27 DACLRCQAENKQEDCVVVWGECNHSFHNCCM 57
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain,
ablim2, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.39.1.3 g.39.1.3
Length = 81
Score = 29.0 bits (65), Expect = 0.32
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 2/42 (4%)
Query: 74 IQACANRYHMIQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHC 115
+ A YH +C C +C + F C
Sbjct: 30 VSALGKTYH--PDCFVCAVCRLPFPPGDRVTFNGKECMCQKC 69
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA
complex, DNA-binding protein- complex; HET: DNA 3DR;
5.93A {Mus musculus}
Length = 117
Score = 29.8 bits (66), Expect = 0.33
Identities = 10/40 (25%), Positives = 11/40 (27%)
Query: 77 CANRYHMIQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116
C N + T C H FH HCI
Sbjct: 54 CRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCI 93
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn
binding domain, metal zinc, zinc-finger, metal binding
protein; NMR {Homo sapiens}
Length = 69
Score = 28.5 bits (64), Expect = 0.42
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 106 PCGHTFHSHCIVQ 118
PC H FH C+ Q
Sbjct: 34 PCMHLFHQVCVDQ 46
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 29.9 bits (67), Expect = 0.44
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 20/97 (20%)
Query: 62 EATRSAEQVRNDIQACANRYHMIQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLD 121
E R+ ++ D + + C +C + ++ NT C H F + CI+ L
Sbjct: 29 ELQRTPQEAITDGLEIVVSPRSLHSELMCPIC-LDMLKNTMTTKECLHRFCADCIITALR 87
Query: 122 PEQKAKLDSEETGSEAVNNYLSRECPYCGSHMIEKES 158
K ECP C ++ K S
Sbjct: 88 SGNK-------------------ECPTCRKKLVSKRS 105
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 28.3 bits (63), Expect = 0.45
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 106 PCGHTFHSHCIVQDLDPEQK 125
PC H F C+ ++
Sbjct: 32 PCKHVFCYLCVKGASWLGKR 51
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.6 bits (66), Expect = 0.59
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 8/57 (14%)
Query: 130 SEETGSEAVNNYLSRECPYCGSH---MIEKESKKE---GGDGGGTEEKTKVNDERVE 180
+ G N + CP C + ++E+ S+ + G + K+ D R E
Sbjct: 8 DKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSD--KLVDTRSE 62
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 29.0 bits (64), Expect = 0.63
Identities = 14/80 (17%), Positives = 21/80 (26%), Gaps = 6/80 (7%)
Query: 86 NCDTCL--LCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAKLD----SEETGSEAVN 139
+C C+ E+ CGH F S C+ L + +
Sbjct: 9 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 68
Query: 140 NYLSRECPYCGSHMIEKESK 159
+ CP C E
Sbjct: 69 GSGTVSCPICMDGYSEIVQN 88
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch
signaling, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.44.1.1
Length = 114
Score = 28.7 bits (63), Expect = 0.75
Identities = 12/52 (23%), Positives = 16/52 (30%), Gaps = 15/52 (28%)
Query: 106 PCGHTFHSHCIVQDLDPEQKAKLDSEETGSEAVNNYLSRECPYCGSHMIEKE 157
C H FH C++ N S +CP C + EK
Sbjct: 60 KCSHAFHLLCLLAMY---------------CNGNKDGSLQCPSCKTIYGEKT 96
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR
{Oryza sativa} SCOP: g.44.1.1
Length = 55
Score = 27.2 bits (61), Expect = 0.78
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 107 CGHTFHSHCI 116
CGH FH+ C+
Sbjct: 27 CGHGFHAECV 36
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus
interaction, receptor, UBL conjugation, UBL conjugation
pathway, acetylation, cytoplasm; 2.60A {Homo sapiens}
SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D
4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Length = 106
Score = 27.9 bits (61), Expect = 1.1
Identities = 10/40 (25%), Positives = 11/40 (27%)
Query: 77 CANRYHMIQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCI 116
C N + T C H FH HCI
Sbjct: 43 CRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCI 82
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4,
UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 94
Score = 27.5 bits (61), Expect = 1.3
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 89 TCLLC-EVQLVSNTFYIFPCGHTFHSHCIVQ 118
C LC V I C F + C+ Q
Sbjct: 7 GCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQ 37
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 28.8 bits (65), Expect = 1.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 163 GDGGGTEEKTKVNDERVEKKPKALEKEEREVKMEGKEMKEEEEDK 207
G + + VE+ K E+EE + + E KE +++E+DK
Sbjct: 217 TRENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREKKEKEQKEKDK 261
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 29.1 bits (64), Expect = 1.4
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 171 KTKVNDERVEKKPKALEKEEREVKMEGKEMKEEEEDKDVVEKKRK 215
KV +E + K LEKE +M+ + + + + ++
Sbjct: 308 GRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDG 352
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 27.1 bits (60), Expect = 1.7
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 106 PCGHTFHSHCIVQDLDPEQK 125
C H F C ++ +
Sbjct: 32 KCRHYFCESCALEHFRATPR 51
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 26.8 bits (59), Expect = 2.4
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 84 IQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQ 118
I C +C ++ + + C CI +
Sbjct: 19 IAEVFRCFIC-MEKLRDARLCPHCSKLCCFSCIRR 52
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 28.4 bits (63), Expect = 2.5
Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 117 VQDLDPEQKAKLDSEETGSEAVNNYLSR----ECPYCGSHMIEKESKKE----GGDGGGT 168
+++L+ EQ+ +L + + + G E E +K+
Sbjct: 99 LKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSY 158
Query: 169 EEKTKVNDERVEKKPKALEKEEREVKMEGKEMKEEEEDK 207
+ D ++ + AL+KE E M +E DK
Sbjct: 159 NKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDK 197
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 2.7
Identities = 19/119 (15%), Positives = 37/119 (31%), Gaps = 44/119 (36%)
Query: 14 LDESDLISIEDILP-FFSDFTCMDQ-FKH---AICAS---------LEQYNQHIVDLKED 59
L + + F DF ++Q +H A AS L+ Y +I D
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD---- 536
Query: 60 MSEATRSAEQVRNDIQACANRYHMIQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQ 118
++ E++ N I + + L+C +T +++
Sbjct: 537 -NDPKY--ERLVNAIL------DFLPKIEENLIC-------------SKYT----DLLR 569
Score = 28.3 bits (62), Expect = 3.1
Identities = 46/293 (15%), Positives = 88/293 (30%), Gaps = 93/293 (31%)
Query: 5 NDIKTALEFLDESDLISIE------------DILPFFSDFTCMDQFKHAI-------CAS 45
++ AL L + + I+ D+ + + I C S
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC---LSYKVQCKMDFKIFWLNLKNCNS 194
Query: 46 ----LEQYNQHIVDLKEDMSEATRSAEQVR---NDIQACANRYHMIQNCDTCLLCEVQL- 97
LE + + + + + + + ++ + IQA R + + CLL V L
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--V-LL 251
Query: 98 -VSNTFYIFPCGHTFHSHC----------IVQDLDPEQKAKLDSEE-----TGSEAVN-- 139
V N + F+ C + L + + T E +
Sbjct: 252 NVQNAKAW----NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 140 -NYLSREC---PY--CGSH-----MIEKESKKEGGDGGGTEEKTK-VNDERVEKKPKA-- 185
YL P ++ +I ES ++G T + K VN +++ ++
Sbjct: 308 LKYLDCRPQDLPREVLTTNPRRLSII-AESIRDGLA---TWDNWKHVNCDKLTTIIESSL 363
Query: 186 --LEKEE-RE-----------VKMEGKEM------KEEEEDKDVVEKKRKRYL 218
LE E R+ + + + + VV K K L
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase,
all alpha, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 129
Score = 26.7 bits (59), Expect = 3.4
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 8/50 (16%)
Query: 50 NQHIVDLKEDMSEATR--------SAEQVRNDIQACANRYHMIQNCDTCL 91
+ I DL++D+++ + E++ + NR MI+N D CL
Sbjct: 37 KRLIRDLQQDVTDGVLLAQIIQVVANEKIEDINGCPKNRSQMIENIDACL 86
>3bbo_3 Ribosomal protein L33; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 66
Score = 25.9 bits (57), Expect = 3.4
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 146 CPYCGSHMIEKESKK 160
CPYC H I E KK
Sbjct: 52 CPYCYKHTIHGEIKK 66
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 27.5 bits (60), Expect = 3.9
Identities = 30/209 (14%), Positives = 75/209 (35%), Gaps = 33/209 (15%)
Query: 35 MDQFKHAICASLEQYNQHIVDLKEDMSEATR----------------SAEQVRNDIQACA 78
QFK I ++++ I + E E S + + +
Sbjct: 185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPLAVVGSNTIIEVNGKRVR 244
Query: 79 NRYH--------MIQNCDTCLLCEVQLVSNTFY-IFPCGHTFHSHCIVQDLDPEQKAKLD 129
R + ++CD +L + + ++ + + + + L +D
Sbjct: 245 GRQYPWGVAEVENGEHCDFTILRNMLIRTHMQDLKDVTNNVHYENYRSRKLAAVTYNGVD 304
Query: 130 SEETGSEAVNNYLSRECPYCGSHMIEKESKKEGGDGGGTEEKTKVNDERVEKKPKALEKE 189
+ + + + L++ H + K K E E +V + +V++K + L+
Sbjct: 305 NNKNKGQLTKSPLAQMEEERREH-VAKMKKME-------MEMEQVFEMKVKEKVQKLKDS 356
Query: 190 EREVKMEGKEMKEEEEDKDVVEKKRKRYL 218
E E++ ++MK+ E + ++++R
Sbjct: 357 EAELQRRHEQMKKNLEAQHKELEEKRRQF 385
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 27.4 bits (61), Expect = 4.5
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 169 EEKTKVNDERVEKKPKALEKEEREVK-MEGKEMKEEEEDKDVVEKKRK 215
+K K+ VE+ K E ++ ++ K ++ +E K ++EK
Sbjct: 906 LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN 953
Score = 26.6 bits (59), Expect = 8.6
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 169 EEKTKVNDERVEKKPKALEKEEREVKMEGKEMKE--EEEDKDVVEKKRKR 216
EE E+ L+++ +K E +E+ ++ K++ E K+
Sbjct: 1011 EEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKK 1060
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural
genomics, PSI-2, protein structure initiative; NMR
{Silicibacter pomeroyi}
Length = 67
Score = 25.4 bits (55), Expect = 4.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 145 ECPYCGSHMIEKESKKEGGD 164
ECPYC + K SK + +
Sbjct: 42 ECPYCDCKYVLKGSKADALE 61
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.39.1.3 g.39.1.3
Length = 81
Score = 25.5 bits (56), Expect = 5.6
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 74 IQACANRYHMIQNCDTCLLCEVQLVSNTFYIFPCGHT-FHSHC 115
+ A +YH C C+ C+V + Y T + C
Sbjct: 30 MVAGEFKYHP--ECFACMSCKVIIEDGDAYALVQHATLYCGKC 70
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 25.5 bits (56), Expect = 7.4
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 89 TCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQK 125
C +C + + I C H + S CI + L + +
Sbjct: 24 RCGIC-FEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQ 59
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 26.6 bits (58), Expect = 7.5
Identities = 33/207 (15%), Positives = 64/207 (30%), Gaps = 37/207 (17%)
Query: 35 MDQFKHAICASLEQYNQHIVDLKEDMSEATRSAEQVRNDI---QACANRYHMIQN----- 86
+ +FK I + L I D + + + I N
Sbjct: 194 LTKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVIGSTEELKIGNKMMRA 253
Query: 87 ---------------CDTCLLCEVQLVSNTFY-IFPCGHTFHSHCIVQDLDPEQKAKLDS 130
CD L E+ + N + L+ D
Sbjct: 254 RQYPWGTVQVENEAHCDFVKLREMLIRVNMEDLREQTHTRHYELYRRCKLEEMGFKDTDP 313
Query: 131 EETGSEAVNNYLSRECPYCGSHMIEKESKKEGGDGGGTEEKTKVNDERVEKKPKALEKEE 190
+ Y ++ + + + KKE EE ++ +RV++K L++ E
Sbjct: 314 DSKPFSLQETYEAKR-----NEFLGELQKKE-------EEMRQMFVQRVKEKEAELKEAE 361
Query: 191 REVKMEGKEMKEEEED-KDVVEKKRKR 216
+E+ + +K+ +D K +E K+K
Sbjct: 362 KELHEKFDRLKKLHQDEKKKLEDKKKS 388
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR
{Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Length = 66
Score = 24.9 bits (55), Expect = 7.7
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 74 IQACANRYHMIQNCDTCLLCEVQLVSNTFY 103
+ A ++H+ C CE + + Y
Sbjct: 20 VNAMGKQWHV--EHFVCAKCEKPFLGHRHY 47
>1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase,
hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces
cerevisiae} SCOP: b.40.5.1 PDB: 1e6a_A* 1wgi_A 1wgj_A
2ihp_A* 8prk_A 2ik6_A 2ik2_A 2ik4_A 117e_A 2ik1_A*
2ik9_A 2ik0_A 2ik7_A 1m38_A 1ypp_A 1huk_A 1huj_A 1pyp_A
Length = 286
Score = 26.4 bits (58), Expect = 9.2
Identities = 8/45 (17%), Positives = 19/45 (42%)
Query: 184 KALEKEEREVKMEGKEMKEEEEDKDVVEKKRKRYLRVSGGKDKDS 228
K + + E K ++ D++++ + ++ GK DS
Sbjct: 193 KIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGKSSDS 237
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.378
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,450,480
Number of extensions: 198197
Number of successful extensions: 834
Number of sequences better than 10.0: 1
Number of HSP's gapped: 806
Number of HSP's successfully gapped: 144
Length of query: 233
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 143
Effective length of database: 4,188,903
Effective search space: 599013129
Effective search space used: 599013129
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.1 bits)