RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7337
(233 letters)
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 30.8 bits (68), Expect = 0.045
Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 15/80 (18%)
Query: 77 CANRYHMIQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAKLDSEETGSE 136
C + + + + C H FH C++
Sbjct: 31 CMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMY---------------C 75
Query: 137 AVNNYLSRECPYCGSHMIEK 156
N S +CP C + EK
Sbjct: 76 NGNKDGSLQCPSCKTIYGEK 95
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 28.0 bits (62), Expect = 0.23
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 88 DTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDL 120
+ C +C ++ SN PC H F CI + +
Sbjct: 6 ERCPIC-LEDPSNYSMALPCLHAFCYVCITRWI 37
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 28.0 bits (62), Expect = 0.24
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 83 MIQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQK 125
M C +C I PCGH + C+ + E +
Sbjct: 19 MGSTFQLCKICAENDKDVK--IEPCGHLMCTSCLTSWQESEGQ 59
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 27.8 bits (61), Expect = 0.43
Identities = 10/42 (23%), Positives = 12/42 (28%)
Query: 77 CANRYHMIQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQ 118
C N + T C H FH HCI +
Sbjct: 27 CRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISR 68
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 26.2 bits (57), Expect = 0.66
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQK 125
C C+ +++ F+ CG+ C + E
Sbjct: 3 CPLCM-EPLEIDDINFFPCTCGYQICRFCWHRIRTDENG 40
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Length = 334
Score = 28.6 bits (63), Expect = 0.70
Identities = 9/53 (16%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 168 TEEKTKVND---ERVEKKPKALEKEEREVKMEGKEMKEEEEDKDVVEKKRKRY 217
EE +D E++ K + + + ++ ++KE E+++ ++ + ++R
Sbjct: 9 REENRVKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERT 61
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 25.6 bits (56), Expect = 1.0
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 87 CDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQ 118
C CL E++ ++ CGH FH+ C+
Sbjct: 8 CAVCL-AELEDGEEARFLPRCGHGFHAECVDM 38
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 25.6 bits (56), Expect = 1.3
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 104 IFPCGHTFHSHCIVQ 118
+ PC HT S C+
Sbjct: 21 LLPCLHTLCSGCLEA 35
>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 124
Score = 26.5 bits (58), Expect = 1.8
Identities = 12/97 (12%), Positives = 27/97 (27%), Gaps = 9/97 (9%)
Query: 37 QFKHA-ICASLEQYNQHIVDLKEDMSEATRSAEQVRNDIQACANRYHMIQNCDTCLLCEV 95
Q+ H+ + + + + + + + I+ +++N
Sbjct: 7 QYAHSRLRSVERNASGITQEKWINADFSLLKEPAAKLLIRLLGQYPDVLRNAIKTHEPTT 66
Query: 96 QLVSNTFYIFPCGHTFHS---HCIVQDLDPE-QKAKL 128
Y+F H S V E A+L
Sbjct: 67 V----VTYLFKLTHQVSSCYDVLWVAGQTEELATARL 99
>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase
{Pseudomonas putida [TaxId: 303]}
Length = 160
Score = 26.8 bits (58), Expect = 1.9
Identities = 7/47 (14%), Positives = 15/47 (31%)
Query: 81 YHMIQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQKAK 127
+++ D L+ + Y + I DP + A+
Sbjct: 80 SQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAAR 126
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 25.3 bits (55), Expect = 3.0
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 89 TCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQK 125
+C +CE L C H F CI++ L
Sbjct: 25 SCQICEHIL--ADPVETSCKHLFCRICILRCLKVMGS 59
>d1e9ga_ b.40.5.1 (A:) Inorganic pyrophosphatase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 284
Score = 26.1 bits (57), Expect = 3.3
Identities = 8/45 (17%), Positives = 19/45 (42%)
Query: 184 KALEKEEREVKMEGKEMKEEEEDKDVVEKKRKRYLRVSGGKDKDS 228
K + + E K ++ D++++ + ++ GK DS
Sbjct: 193 KIPDGKPENQFAFSGEAKNKKYALDIIKETHDSWKQLIAGKSSDS 237
>d2j0161 g.41.8.6 (6:9-53) Ribosomal protein L33p {Thermus
thermophilus [TaxId: 274]}
Length = 45
Score = 23.8 bits (52), Expect = 3.7
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 146 CPYCGSHMIEKESK 159
CP+C H + +E K
Sbjct: 32 CPWCRKHTVHREVK 45
>d1de4a2 d.19.1.1 (A:4-181) Hemochromatosis protein Hfe, alpha-1 and
alpha-2 domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 25.5 bits (55), Expect = 5.3
Identities = 12/78 (15%), Positives = 23/78 (29%), Gaps = 7/78 (8%)
Query: 77 CANRYHMIQNCDTCLLCEVQLVSNTFYIFPCGHTF----HSHCIVQDLDPEQ---KAKLD 129
+ H +Q C + E + G + +P K + +
Sbjct: 86 HSKESHTLQVILGCEMQEDNSTEGYWKYGYDGQDHLEFCPDTLDWRAAEPRAWPTKLEWE 145
Query: 130 SEETGSEAVNNYLSRECP 147
+ + YL R+CP
Sbjct: 146 RHKIRARQNRAYLERDCP 163
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 24.7 bits (53), Expect = 5.8
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 84 IQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQ 124
++ C C ++ + C H F S+C+ +
Sbjct: 19 LEKLLRCSRCT-NILREPVCLGGCEHIFCSNCVSDCIGTGC 58
>d1kcgc_ d.19.1.1 (C:) Class I MHC-related molecule Ulbp3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 25.0 bits (54), Expect = 6.5
Identities = 8/76 (10%), Positives = 21/76 (27%), Gaps = 7/76 (9%)
Query: 79 NRYHMIQNCDTCLLCEVQLVSNTF------YIFPCGHTFHSHCIVQDLDPEQ-KAKLDSE 131
+ +Q +C + ++ F + + V + K K + +
Sbjct: 88 SGPLTLQVRMSCECEADGYIRGSWQFSFDGRKFLLFDSNNRKWTVVHAGARRMKEKWEKD 147
Query: 132 ETGSEAVNNYLSRECP 147
+ R+C
Sbjct: 148 SGLTTFFKMVSMRDCK 163
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 25.1 bits (55), Expect = 6.7
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 176 DERVEKKPKALEKEEREVKMEGKEMKEEEEDK 207
+ E+K K L +E K + + +E+ E+
Sbjct: 102 QLQKEQK-KQLTSQE---KKQIRLEREKFEED 129
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I,
dispensable insert domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 72
Score = 24.0 bits (52), Expect = 6.9
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 176 DERVEKKPKALEKEEREVKMEGKEMKEEEEDKD--VVEKKRKRYLRV 220
+++ K + L R++K + K ++ K VVE K+K R+
Sbjct: 8 QTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRL 54
>d1iyjb2 a.171.1.1 (B:2761-2897) BRCA2 tower domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 137
Score = 24.5 bits (53), Expect = 8.8
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 177 ERVEKKPKALEKEEREVKMEG------KEMKEEEEDKDVVEKKRKRYLR 219
ER E+K E ++ K+E E+KE EED + R
Sbjct: 14 EREEEKEALRFAEAQQKKLEALFTKVHTELKEHEEDIAQRRVLSRALTR 62
>d1hyrc2 d.19.1.1 (C:0-180) Class I MHC homolog {Human (Homo
sapiens), Mic-a [TaxId: 9606]}
Length = 181
Score = 24.5 bits (53), Expect = 9.4
Identities = 11/92 (11%), Positives = 30/92 (32%), Gaps = 20/92 (21%)
Query: 72 NDIQACANRYHMIQNCDTCLLCEVQLVSNTFYIFPCGHTFHSHCIVQDLDPEQ------- 124
I+ H +Q C + E ++ + + G F + Q+L+ ++
Sbjct: 79 AHIKDQKEGLHSLQEIRVCEIHEDNSTRSSQHFYYDGELF----LSQNLETKEWTMPQSS 134
Query: 125 ---------KAKLDSEETGSEAVNNYLSRECP 147
+ L + ++ + + +C
Sbjct: 135 RAQTLAMNVRNFLKEDAMKTKTHYHAMHADCL 166
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.131 0.378
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 859,577
Number of extensions: 40064
Number of successful extensions: 177
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 50
Length of query: 233
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,281,736
Effective search space: 193542136
Effective search space used: 193542136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.1 bits)