BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7339
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NNE|A Chain A, Crystal Structure Of The Muts-adpbef3-dna Complex
pdb|1NNE|B Chain B, Crystal Structure Of The Muts-adpbef3-dna Complex
Length = 765
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 57/82 (69%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS +++Q AL+ ++AQVG +VPA A L D IYTRIG +D + STF +EM+E
Sbjct: 586 MAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEE 645
Query: 61 IAHIIQFLTPRSLILVDELCRA 82
+A I++ T SL+L+DE+ R
Sbjct: 646 VALILKEATENSLVLLDEVGRG 667
>pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4)
And Adp
pdb|3THX|B Chain B, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3)
And Adp
pdb|3THY|B Chain B, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2)
And Adp
pdb|3THZ|B Chain B, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6)
And Adp
Length = 918
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 55/82 (67%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YIKQVAL+ IMAQ+G YVPA A + D I+TR+G D+I STF E+ +
Sbjct: 683 MGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTD 742
Query: 61 IAHIIQFLTPRSLILVDELCRA 82
A II+ T +SL+++DEL R
Sbjct: 743 TAEIIRKATSQSLVILDELGRG 764
>pdb|2O8B|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR
pdb|2O8C|B Chain B, Human Mutsalpha (msh2/msh6) Bound To Adp And An
O6-methyl-guanine T Mispair
pdb|2O8D|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G DU MISPAIR
pdb|2O8E|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH
ADP BOUND TO Msh2 Only
pdb|2O8F|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO DNA WITH A SINGLE BASE
T INSERT
Length = 1022
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 51/82 (62%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS ++Q LL +MAQ+GCYVPA + D ++TR+G +D I STF +E+ E
Sbjct: 799 MGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSE 858
Query: 61 IAHIIQFLTPRSLILVDELCRA 82
A I+ T SL+LVDEL R
Sbjct: 859 TASILMHATAHSLVLVDELGRG 880
>pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
pdb|1FW6|B Chain B, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
Length = 768
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
+GKS +++Q AL+ ++AQVG +VPA A L D IYTRIG +D + STF +E +E+
Sbjct: 587 AGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFXVEXEEV 646
Query: 62 AHIIQFLTPRSLILVDELCRA 82
A I++ T SL+L+DE+ R
Sbjct: 647 ALILKEATENSLVLLDEVGRG 667
>pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
pdb|1EWQ|B Chain B, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
Length = 765
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
+GKS +++Q AL+ ++AQVG +VPA A L D IYTRIG +D + STF +E +E+
Sbjct: 587 AGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFXVEXEEV 646
Query: 62 AHIIQFLTPRSLILVDELCRA 82
A I++ T SL+L+DE+ R
Sbjct: 647 ALILKEATENSLVLLDEVGRG 667
>pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts
pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts
Length = 649
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
+GKS +++Q AL+ ++AQVG +VPA A L D IYTRIG +D + STF +E +E+
Sbjct: 471 AGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFXVEXEEV 530
Query: 62 AHIIQFLTPRSLILVDELCRA 82
A I++ T SL+L+DE+ R
Sbjct: 531 ALILKEATENSLVLLDEVGRG 551
>pdb|2F6Q|A Chain A, The Crystal Structure Of Human Peroxisomal Delta3, Delta2
Enoyl Coa Isomerase (Peci)
pdb|2F6Q|B Chain B, The Crystal Structure Of Human Peroxisomal Delta3, Delta2
Enoyl Coa Isomerase (Peci)
pdb|2F6Q|C Chain C, The Crystal Structure Of Human Peroxisomal Delta3, Delta2
Enoyl Coa Isomerase (Peci)
Length = 280
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 57/94 (60%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+ATFHTPF+ G +PEGCSS FP+I + A+E L G+KL A EA G V+ VF
Sbjct: 151 RATFHTPFSHLGQSPEGCSSYTFPKIXSPAKATEXLIFGKKLTAGEACAQGLVTEVFPDS 210
Query: 180 EIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRD 213
++++W R+ A+AKL + + ++R R+
Sbjct: 211 TFQKEVWTRLKAFAKLPPNALRISKEVIRKRERE 244
>pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH5|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH6|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH6|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH7|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH7|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH8|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1OH8|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1W7A|A Chain A, Atp Bound Muts
pdb|1W7A|B Chain B, Atp Bound Muts
pdb|2WTU|A Chain A, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch.
pdb|2WTU|B Chain B, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch
Length = 800
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 51/82 (62%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y++Q AL+ +MA +G YVPA E D I+TR+G D + STF +EM E
Sbjct: 617 MGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTE 676
Query: 61 IAHIIQFLTPRSLILVDELCRA 82
A+I+ T SL+L+DE+ R
Sbjct: 677 TANILHNATEYSLVLMDEIGRG 698
>pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
pdb|1WBD|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 51/82 (62%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y++Q AL+ +MA +G YVPA E D I+TR+G D + STF +EM E
Sbjct: 617 MGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTE 676
Query: 61 IAHIIQFLTPRSLILVDELCRA 82
A+I+ T SL+L+DE+ R
Sbjct: 677 TANILHNATEYSLVLMDEIGRG 698
>pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
pdb|1WB9|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 51/82 (62%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y++Q AL+ +MA +G YVPA E D I+TR+G D + STF +EM E
Sbjct: 617 MGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTE 676
Query: 61 IAHIIQFLTPRSLILVDELCRA 82
A+I+ T SL+L+DE+ R
Sbjct: 677 TANILHNATEYSLVLMDEIGRG 698
>pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
pdb|1WBB|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 51/82 (62%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y++Q AL+ +MA +G YVPA E D I+TR+G D + STF +EM E
Sbjct: 617 MGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTE 676
Query: 61 IAHIIQFLTPRSLILVDELCRA 82
A+I+ T SL+L+DE+ R
Sbjct: 677 TANILHNATEYSLVLMDEIGRG 698
>pdb|2O8E|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH
ADP BOUND TO Msh2 Only
Length = 934
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 50/82 (60%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+Q ++ +MAQ+GC+VP AE + D I R+G DS STF EM E
Sbjct: 672 MGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLE 731
Query: 61 IAHIIQFLTPRSLILVDELCRA 82
A I++ T SLI++DEL R
Sbjct: 732 TASILRSATKDSLIIIDELGRG 753
>pdb|2O8B|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR
pdb|2O8C|A Chain A, Human Mutsalpha (msh2/msh6) Bound To Adp And An
O6-methyl-guanine T Mispair
pdb|2O8D|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G DU MISPAIR
pdb|2O8F|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO DNA WITH A SINGLE BASE
T INSERT
pdb|3THW|A Chain A, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4)
And Adp
pdb|3THX|A Chain A, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3)
And Adp
pdb|3THY|A Chain A, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2)
And Adp
pdb|3THZ|A Chain A, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6)
And Adp
Length = 934
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 50/82 (60%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+Q ++ +MAQ+GC+VP AE + D I R+G DS STF EM E
Sbjct: 672 MGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLE 731
Query: 61 IAHIIQFLTPRSLILVDELCRA 82
A I++ T SLI++DEL R
Sbjct: 732 TASILRSATKDSLIIIDELGRG 753
>pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
pdb|1NG9|B Chain B, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
Length = 800
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 50/79 (63%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y++Q AL+ +MA +G YVPA E D I+TR+G D + STF +EM E
Sbjct: 617 MGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTE 676
Query: 61 IAHIIQFLTPRSLILVDEL 79
A+I+ T SL+L+DE+
Sbjct: 677 TANILHNATEYSLVLMDEI 695
>pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
pdb|3K0S|B Chain B, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
Length = 799
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 51/82 (62%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y++Q AL+ +MA +G YVPA E D I+TR+G D + STF +EM E
Sbjct: 616 MGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTE 675
Query: 61 IAHIIQFLTPRSLILVDELCRA 82
A+I+ T SL+L++E+ R
Sbjct: 676 TANILHNATEYSLVLMNEIGRG 697
>pdb|2GTR|A Chain A, Human Chromodomain Y-Like Protein
pdb|2GTR|B Chain B, Human Chromodomain Y-Like Protein
pdb|2GTR|C Chain C, Human Chromodomain Y-Like Protein
Length = 261
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F TP+T G +P+GCS+V+FP+I G + A+E+L +GRKL AQEA G VS VF
Sbjct: 131 KAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPG 190
Query: 180 EIERDLWPRIHAWAKLSSC 198
+++ RI +L+SC
Sbjct: 191 TFTQEVMVRIK---ELASC 206
>pdb|2FW2|A Chain A, Catalytic Domain Of Cdy
pdb|2FW2|B Chain B, Catalytic Domain Of Cdy
pdb|2FW2|C Chain C, Catalytic Domain Of Cdy
pdb|2FW2|D Chain D, Catalytic Domain Of Cdy
pdb|2FW2|E Chain E, Catalytic Domain Of Cdy
pdb|2FW2|F Chain F, Catalytic Domain Of Cdy
Length = 260
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 54/89 (60%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F TP+T G +P+GCSS+ FP++ G + A+E+L GRKL A+EA G VS VF T
Sbjct: 130 KAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTG 189
Query: 180 EIERDLWPRIHAWAKLSSCIVSLLAHLMR 208
+++ +I A ++ ++ L+R
Sbjct: 190 TFTQEVMIQIKELASYNAIVLEECKALVR 218
>pdb|2FBM|A Chain A, Acetyltransferase Domain Of Cdy1
pdb|2FBM|B Chain B, Acetyltransferase Domain Of Cdy1
pdb|2FBM|C Chain C, Acetyltransferase Domain Of Cdy1
Length = 291
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 53/89 (59%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F TP+T G +P+GCSS+ FP++ G + A+E+L GRKL A+EA G VS VF T
Sbjct: 149 KAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTG 208
Query: 180 EIERDLWPRIHAWAKLSSCIVSLLAHLMR 208
+++ +I A + ++ L+R
Sbjct: 209 TFTQEVMIQIKELASYNPIVLEECKALVR 237
>pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
pdb|1E3M|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
Length = 800
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 46/80 (57%)
Query: 3 GKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIA 62
GKS Y +Q AL+ + A +G YVPA E D I+TR+G D + STF +E E A
Sbjct: 619 GKSTYXRQTALIALXAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFXVEXTETA 678
Query: 63 HIIQFLTPRSLILVDELCRA 82
+I+ T SL+L DE+ R
Sbjct: 679 NILHNATEYSLVLXDEIGRG 698
>pdb|3FDU|A Chain A, Crystal Structure Of A Putative Enoyl-Coa
HydrataseISOMERASE FROM Acinetobacter Baumannii
pdb|3FDU|B Chain B, Crystal Structure Of A Putative Enoyl-Coa
HydrataseISOMERASE FROM Acinetobacter Baumannii
pdb|3FDU|C Chain C, Crystal Structure Of A Putative Enoyl-Coa
HydrataseISOMERASE FROM Acinetobacter Baumannii
pdb|3FDU|D Chain D, Crystal Structure Of A Putative Enoyl-Coa
HydrataseISOMERASE FROM Acinetobacter Baumannii
pdb|3FDU|E Chain E, Crystal Structure Of A Putative Enoyl-Coa
HydrataseISOMERASE FROM Acinetobacter Baumannii
pdb|3FDU|F Chain F, Crystal Structure Of A Putative Enoyl-Coa
HydrataseISOMERASE FROM Acinetobacter Baumannii
Length = 266
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGV 175
A F PF G++PEG +S L + G A+ELL+T +K NA+ ALQ G V+ +
Sbjct: 130 ALFQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNEI 184
>pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From
Mycobacterium Marinum
Length = 256
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A PFT G+ PE SS L P++ G A+ LL + ++A+EAL+ G V + + EE
Sbjct: 130 ARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRICSPEE 189
Query: 181 IERDLWPRIHAWAKLSSCIVSLLA 204
+ + R HA + I SL+A
Sbjct: 190 LLPE--ARRHAEILAAKPISSLMA 211
>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|B Chain B, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|C Chain C, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|D Chain D, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|E Chain E, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|F Chain F, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
Length = 254
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A+F T F G+ P+ S L PR+ G + A ELL +L+A+EAL G V V E+
Sbjct: 122 ASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRVVPAEK 181
Query: 181 I 181
+
Sbjct: 182 L 182
>pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM
Mycobacterium Avium
pdb|3P5M|B Chain B, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM
Mycobacterium Avium
pdb|3P5M|C Chain C, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM
Mycobacterium Avium
pdb|3P5M|D Chain D, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM
Mycobacterium Avium
pdb|3P5M|E Chain E, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM
Mycobacterium Avium
pdb|3P5M|F Chain F, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM
Mycobacterium Avium
Length = 255
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 123 FHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 182
F FT G+ P+G +S L P + G + S + T K++A A ++G +S + + +E E
Sbjct: 125 FQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSADEYE 184
>pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa
Hydratase From Bacillus Anthracis.
pdb|3KQF|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa
Hydratase From Bacillus Anthracis.
pdb|3KQF|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa
Hydratase From Bacillus Anthracis.
pdb|3KQF|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa
Hydratase From Bacillus Anthracis.
pdb|3KQF|E Chain E, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa
Hydratase From Bacillus Anthracis.
pdb|3KQF|F Chain F, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa
Hydratase From Bacillus Anthracis
Length = 265
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 132 MTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 172
+ P + PR+ G A EL+YTGR+++AQEA +YG V
Sbjct: 144 IIPGAGGTQRLPRLIGVGRAKELIYTGRRISAQEAKEYGLV 184
>pdb|1O8U|A Chain A, The 2 Angstrom Structure Of 6-oxo Camphor Hydrolase: New
Structural Diversity In The Crotonase Superfamily
pdb|1O8U|B Chain B, The 2 Angstrom Structure Of 6-oxo Camphor Hydrolase: New
Structural Diversity In The Crotonase Superfamily
pdb|1O8U|C Chain C, The 2 Angstrom Structure Of 6-oxo Camphor Hydrolase: New
Structural Diversity In The Crotonase Superfamily
pdb|1O8U|D Chain D, The 2 Angstrom Structure Of 6-oxo Camphor Hydrolase: New
Structural Diversity In The Crotonase Superfamily
pdb|1O8U|E Chain E, The 2 Angstrom Structure Of 6-oxo Camphor Hydrolase: New
Structural Diversity In The Crotonase Superfamily
pdb|1O8U|F Chain F, The 2 Angstrom Structure Of 6-oxo Camphor Hydrolase: New
Structural Diversity In The Crotonase Superfamily
Length = 257
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 121 ATFHT-PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
ATF P G+ P + V++P + G++ L TG++L+A+ AL YG V+ V +
Sbjct: 138 ATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLS-- 195
Query: 180 EIERDLWPRIHAW 192
E++L PR AW
Sbjct: 196 --EQELLPR--AW 204
>pdb|1SZO|A Chain A, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase
His122ala Mutant Bound To Its Natural Product (2s,4s)-
Alpha-Campholinic Acid
pdb|1SZO|B Chain B, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase
His122ala Mutant Bound To Its Natural Product (2s,4s)-
Alpha-Campholinic Acid
pdb|1SZO|C Chain C, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase
His122ala Mutant Bound To Its Natural Product (2s,4s)-
Alpha-Campholinic Acid
pdb|1SZO|D Chain D, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase
His122ala Mutant Bound To Its Natural Product (2s,4s)-
Alpha-Campholinic Acid
pdb|1SZO|E Chain E, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase
His122ala Mutant Bound To Its Natural Product (2s,4s)-
Alpha-Campholinic Acid
pdb|1SZO|F Chain F, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase
His122ala Mutant Bound To Its Natural Product (2s,4s)-
Alpha-Campholinic Acid
pdb|1SZO|G Chain G, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase
His122ala Mutant Bound To Its Natural Product (2s,4s)-
Alpha-Campholinic Acid
pdb|1SZO|H Chain H, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase
His122ala Mutant Bound To Its Natural Product (2s,4s)-
Alpha-Campholinic Acid
pdb|1SZO|I Chain I, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase
His122ala Mutant Bound To Its Natural Product (2s,4s)-
Alpha-Campholinic Acid
pdb|1SZO|J Chain J, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase
His122ala Mutant Bound To Its Natural Product (2s,4s)-
Alpha-Campholinic Acid
pdb|1SZO|K Chain K, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase
His122ala Mutant Bound To Its Natural Product (2s,4s)-
Alpha-Campholinic Acid
pdb|1SZO|L Chain L, Crystal Structure Analysis Of The 6-Oxo Camphor Hydrolase
His122ala Mutant Bound To Its Natural Product (2s,4s)-
Alpha-Campholinic Acid
Length = 257
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 121 ATFHT-PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
ATF P G+ P + V++P + G++ L TG++L+A+ AL YG V+ V +
Sbjct: 138 ATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLS-- 195
Query: 180 EIERDLWPRIHAW 192
E++L PR AW
Sbjct: 196 --EQELLPR--AW 204
>pdb|2Q35|A Chain A, Crystal Structure Of The Y82f Variant Of Ech2
Decarboxylase Domain Of Curf From Lyngbya Majuscula
Length = 243
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 116 VFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGV 175
VF ++ + T F G TP G +S++ G+ +A E++YTG +E + G V
Sbjct: 116 VFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPV 175
Query: 176 FTTEEI---ERDLWPRIHAWAKLSSCIVSLLAHLMRGI 210
+ +++ + L +I +LS +V+L HL I
Sbjct: 176 VSRQDVLNYAQQLGQKIAKSPRLS--LVALKQHLSADI 211
>pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|B Chain B, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|C Chain C, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|D Chain D, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|E Chain E, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|F Chain F, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|G Chain G, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|H Chain H, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
pdb|2VX2|I Chain I, Crystal Structure Of Human Enoyl Coenzyme A Hydratase
Domain-Containing Protein 3 (Echdc3)
Length = 287
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 120 QATFHTPFTLRGMTPEGCSS--VLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFT 177
+++F TP G+ CS+ V R VA E+L+TG ++AQEAL +G +S V
Sbjct: 156 KSSFATPGVNVGLF---CSTPGVALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVP 212
Query: 178 TEEIERDLWPRIHAWAKLSSCIVSL 202
E++ + A LS +VSL
Sbjct: 213 EAELQEETMRIARKIASLSRPVVSL 237
>pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From
Mycobacterium Marinum
pdb|4DI1|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From
Mycobacterium Marinum
pdb|4DI1|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From
Mycobacterium Marinum
Length = 277
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 123 FHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 182
F L G+ P G R+ G+S A EL+++GR +A+EAL G + + +
Sbjct: 148 FGATEILAGLIPGGGGMGRLTRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPD--- 204
Query: 183 RDLWPRIHAWAK 194
D++ AWA+
Sbjct: 205 -DVYDSAVAWAR 215
>pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5,
Delta2,4-Dienoyl Coa Isomerase
pdb|2VRE|B Chain B, Crystal Structure Of Human Peroxisomal Delta3,5,
Delta2,4-Dienoyl Coa Isomerase
pdb|2VRE|C Chain C, Crystal Structure Of Human Peroxisomal Delta3,5,
Delta2,4-Dienoyl Coa Isomerase
Length = 296
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 142 FPRIFGN-SVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERD 184
P++ GN S+ +EL +T RK+ A EAL G VS VF +E+ D
Sbjct: 186 LPKVIGNQSLVNELAFTARKMMADEALGSGLVSRVFPDKEVMLD 229
>pdb|2Q2X|A Chain A, Crystal Structure Of The Ech2 Decarboxylase Domain Of Curf
From Lyngbya Majuscula
pdb|2Q34|A Chain A, Crystal Structure Of The Ech2 Decarboxylase Domain Of Curf
From Lyngbya Majuscula, Rhombohedral Crystal Form
Length = 243
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 116 VFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGV 175
VF ++ + T F G TP G +S++ G+ +A E +YTG +E + G V
Sbjct: 116 VFSQESVYATNFXKYGFTPVGATSLILREKLGSELAQEXIYTGENYRGKELAERGIPFPV 175
Query: 176 FTTEEI---ERDLWPRIHAWAKLSSCIVSLLAHLMRGI 210
+ +++ + L +I +LS +V+L HL I
Sbjct: 176 VSRQDVLNYAQQLGQKIAKSPRLS--LVALKQHLSADI 211
>pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase
pdb|1DCI|B Chain B, Dienoyl-Coa Isomerase
pdb|1DCI|C Chain C, Dienoyl-Coa Isomerase
Length = 275
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 142 FPRIFGN-SVASELLYTGRKLNAQEALQYGFVSGVFTTEEI 181
P++ GN S+ +EL +T RK+ A EAL G VS VF +++
Sbjct: 159 LPKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDV 199
>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
pdb|3ZWB|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
Length = 742
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A P G+ P + L PR+ G VA +L+ +G+ L+A EAL+ G + V ++
Sbjct: 136 KARVGLPAVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSD 195
Query: 180 EIE 182
+E
Sbjct: 196 PVE 198
>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa
pdb|2X58|B Chain B, The Crystal Structure Of Mfe1 Liganded With Coa
Length = 727
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A P G+ P + L PR+ G VA +L+ +G+ L+A EAL+ G + V ++
Sbjct: 121 KARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSD 180
Query: 180 EIE 182
+E
Sbjct: 181 PVE 183
>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW8|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW9|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZW9|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZWA|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWA|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWC|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
pdb|3ZWC|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
Length = 742
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A P G+ P + L PR+ G VA +L+ +G+ L+A EAL+ G + V ++
Sbjct: 136 KARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSD 195
Query: 180 EIE 182
+E
Sbjct: 196 PVE 198
>pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From
Mycobacterium Marinum
Length = 298
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 130 RGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRI 189
RG+ E S + PR+ +VA +LL +GR A+EA Q G V V T E+ L PR
Sbjct: 170 RGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQ----LMPRA 225
Query: 190 HAWAK--LSSCIVSLLAHLMRGILRD 213
+A+ C S +A + R + D
Sbjct: 226 LEYAEDIARYCSPSSMAVIKRQVYGD 251
>pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3QXZ|B Chain B, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3QXZ|C Chain C, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
Length = 265
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 116 VFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVS 173
+ + + P G+ P+ + PR+ G +VA+ELL TG +AQ A++ G +
Sbjct: 124 ILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLAN 181
>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3SLL|B Chain B, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3SLL|C Chain C, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3SLL|D Chain D, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3SLL|E Chain E, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3SLL|F Chain F, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
Length = 290
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 139 SVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI 181
S L PR G S AS+++ TGR ++A EA + G VS +E +
Sbjct: 173 SYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVASESL 215
>pdb|2UZF|A Chain A, Crystal Structure Of Staphylococcus Aureus
1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In
Complex With Acetoacetyl Coa
pdb|2UZF|B Chain B, Crystal Structure Of Staphylococcus Aureus
1,4-Dihydroxy-2- Naphthoyl Coa Synthase (Menb) In
Complex With Acetoacetyl Coa
Length = 273
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 136 GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 182
G S RI G+ A E+ Y R+ NAQEAL G V+ V E++E
Sbjct: 153 GYGSGYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEKVE 199
>pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Halodurans
pdb|3LKE|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Halodurans
pdb|3LKE|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Halodurans
Length = 263
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F F G++P+ +S PRI G LL G+ ++EAL+ G + +
Sbjct: 131 RAKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEIC--- 187
Query: 180 EIERDLWPRIHAWAKLSS 197
E +++L R+ + K S
Sbjct: 188 ENKQELQERVKNYLKAVS 205
>pdb|3LAO|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Pseudomonas
Aeruginosa Pa01
pdb|3LAO|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase From Pseudomonas
Aeruginosa Pa01
pdb|3LAO|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase From Pseudomonas
Aeruginosa Pa01
Length = 258
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 129 LRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFT-TEEIERDL 185
LRG+ P G S+V FPR G + A + TG + +A EAL+ ++ V EE+ R L
Sbjct: 144 LRGIPPLGGSTVRFPRAAGWTDAXRYILTGDEFDADEALRXRLLTEVVEPGEELARAL 201
>pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas
Sp. Strain Cbs-3
pdb|1NZY|C Chain C, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas
Sp. Strain Cbs-3
Length = 269
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F + G+ + +S RI G A EL+ T R L +EA +G VS V+ +E
Sbjct: 131 AKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDE 190
Query: 181 IERDLW 186
W
Sbjct: 191 FREVAW 196
>pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A
Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A
(Product)
pdb|1JXZ|B Chain B, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A
Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A
(Product)
pdb|1JXZ|C Chain C, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A
Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A
(Product)
Length = 269
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F + G+ + +S RI G A EL+ T R L +EA +G VS V+ +E
Sbjct: 131 AKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDE 190
Query: 181 IERDLW 186
W
Sbjct: 191 FREVAW 196
>pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas
Sp. Strain Cbs-3
Length = 269
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F + G+ + +S RI G A EL+ T R L +EA +G VS V+ +E
Sbjct: 131 AKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTDRTLYPEEAKDWGLVSRVYPKDE 190
Query: 181 IERDLW 186
W
Sbjct: 191 FREVAW 196
>pdb|1HZD|A Chain A, Crystal Structure Of Human Auh Protein, An Rna-Binding
Homologue Of Enoyl-Coa Hydratase
pdb|1HZD|B Chain B, Crystal Structure Of Human Auh Protein, An Rna-Binding
Homologue Of Enoyl-Coa Hydratase
pdb|1HZD|C Chain C, Crystal Structure Of Human Auh Protein, An Rna-Binding
Homologue Of Enoyl-Coa Hydratase
pdb|1HZD|D Chain D, Crystal Structure Of Human Auh Protein, An Rna-Binding
Homologue Of Enoyl-Coa Hydratase
pdb|1HZD|E Chain E, Crystal Structure Of Human Auh Protein, An Rna-Binding
Homologue Of Enoyl-Coa Hydratase
pdb|1HZD|F Chain F, Crystal Structure Of Human Auh Protein, An Rna-Binding
Homologue Of Enoyl-Coa Hydratase
pdb|2ZQQ|A Chain A, Crystal Structure Of Human Auh (3-Methylglutaconyl-Coa
Hydratase) Mixed With (Auuu)24a Rna
pdb|2ZQQ|B Chain B, Crystal Structure Of Human Auh (3-Methylglutaconyl-Coa
Hydratase) Mixed With (Auuu)24a Rna
pdb|2ZQQ|C Chain C, Crystal Structure Of Human Auh (3-Methylglutaconyl-Coa
Hydratase) Mixed With (Auuu)24a Rna
pdb|2ZQQ|D Chain D, Crystal Structure Of Human Auh (3-Methylglutaconyl-Coa
Hydratase) Mixed With (Auuu)24a Rna
pdb|2ZQQ|E Chain E, Crystal Structure Of Human Auh (3-Methylglutaconyl-Coa
Hydratase) Mixed With (Auuu)24a Rna
pdb|2ZQQ|F Chain F, Crystal Structure Of Human Auh (3-Methylglutaconyl-Coa
Hydratase) Mixed With (Auuu)24a Rna
pdb|2ZQR|A Chain A, Crystal Structure Of Auh Without Rna
pdb|2ZQR|B Chain B, Crystal Structure Of Auh Without Rna
pdb|2ZQR|C Chain C, Crystal Structure Of Auh Without Rna
pdb|2ZQR|D Chain D, Crystal Structure Of Auh Without Rna
pdb|2ZQR|E Chain E, Crystal Structure Of Auh Without Rna
pdb|2ZQR|F Chain F, Crystal Structure Of Auh Without Rna
Length = 272
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 132 MTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVF 176
+ P G + PR G S+A EL+++ R L+ +EA G +S V
Sbjct: 147 IIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVL 191
>pdb|3R9Q|A Chain A, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM
Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R9Q|B Chain B, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM
Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R9Q|C Chain C, Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM
Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 262
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 138 SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFT 177
++ PR+ G+S A +L+ TGR ++A EAL G V+ V
Sbjct: 149 GTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVVA 188
>pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE
FROM Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3RSI|B Chain B, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE
FROM Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3RSI|C Chain C, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE
FROM Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 265
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVF--- 176
ATF P RG+ P S V R + A E++ TG L A EA +G V V
Sbjct: 132 HATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAG 191
Query: 177 TTEEIERDLWPRI 189
T + R L RI
Sbjct: 192 TALDKARSLADRI 204
>pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From
Rhodopseudomonas Palustris Cga009
pdb|3HIN|B Chain B, Crystal Structure Of Putative Enoyl-Coa Hydratase From
Rhodopseudomonas Palustris Cga009
Length = 275
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGF 171
A + P RG+ G SV PR+ G + ++++ TGR +A E + +GF
Sbjct: 137 AYYALPEGSRGIFVGGGGSVRLPRLIGVARMADMMLTGRVYSAAEGVVHGF 187
>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
Length = 261
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 131 GMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
G+ P + PR G + A E T + EAL++G V+GVF E
Sbjct: 139 GLIPGFAGTQRLPRYVGKAKACEXXLTSTPITGAEALKWGLVNGVFAEE 187
>pdb|3OME|A Chain A, Crystal Structure Of A Probable Enoyl-Coa Hydratase From
Mycobacterium Smegmatis
pdb|3OME|B Chain B, Crystal Structure Of A Probable Enoyl-Coa Hydratase From
Mycobacterium Smegmatis
pdb|3OME|C Chain C, Crystal Structure Of A Probable Enoyl-Coa Hydratase From
Mycobacterium Smegmatis
pdb|3OME|D Chain D, Crystal Structure Of A Probable Enoyl-Coa Hydratase From
Mycobacterium Smegmatis
pdb|3OME|E Chain E, Crystal Structure Of A Probable Enoyl-Coa Hydratase From
Mycobacterium Smegmatis
pdb|3OME|F Chain F, Crystal Structure Of A Probable Enoyl-Coa Hydratase From
Mycobacterium Smegmatis
Length = 282
Score = 33.5 bits (75), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 120 QATFHTPFTLRGMTP---EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVF 176
A F P L G+ G + L PR A E+L+TGR L A+EA + G V+ V
Sbjct: 150 DALFSDPVALMGIGGVEYHGHTWELGPR-----KAKEILFTGRALTAEEAERTGMVNRVV 204
Query: 177 TTEEIE 182
+E++
Sbjct: 205 ARDELD 210
>pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From
Mycobacterium Marinum
pdb|3QKA|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From
Mycobacterium Marinum
pdb|3QKA|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From
Mycobacterium Marinum
pdb|3QKA|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From
Mycobacterium Marinum
pdb|3QKA|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From
Mycobacterium Marinum
pdb|3QKA|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From
Mycobacterium Marinum
Length = 261
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 138 SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGV 175
+V PR+ G+S A +++ TGR + A EAL G + V
Sbjct: 146 GTVRLPRLIGHSRAMDMILTGRAVQADEALAIGLANRV 183
>pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3TRR|B Chain B, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3TRR|C Chain C, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3TRR|D Chain D, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3TRR|E Chain E, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3TRR|F Chain F, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
Length = 256
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVS 173
A F P RG+ + P VA EL TG A++A +YGF++
Sbjct: 124 AKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFIN 176
>pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From
Mycob Smegmatis
Length = 263
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVS 173
A F P G+ P + R G + A +L TGR L A+EA + G VS
Sbjct: 131 ARFGQPEITLGILPGLGGTQRLTRAVGKAKAMDLCLTGRSLTAEEAERVGLVS 183
>pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From
Mycobacterium Marinum
Length = 278
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%)
Query: 134 PEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGV 175
P G S+V R +VA +LL TGR + A EA + G V V
Sbjct: 159 PMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMGLVGHV 200
>pdb|3T3W|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From
Mycobacterium Thermoresistibile
pdb|3T3W|B Chain B, Crystal Structure Of Probable Enoyl-Coa Hydratase From
Mycobacterium Thermoresistibile
pdb|3T3W|C Chain C, Crystal Structure Of Probable Enoyl-Coa Hydratase From
Mycobacterium Thermoresistibile
pdb|3T3W|D Chain D, Crystal Structure Of Probable Enoyl-Coa Hydratase From
Mycobacterium Thermoresistibile
pdb|3T3W|E Chain E, Crystal Structure Of Probable Enoyl-Coa Hydratase From
Mycobacterium Thermoresistibile
pdb|3T3W|F Chain F, Crystal Structure Of Probable Enoyl-Coa Hydratase From
Mycobacterium Thermoresistibile
Length = 279
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 120 QATFHTPFTLR---GMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVF 176
A F P L G+ G + L PR A E+L+TGR + A+E Q G V+ V
Sbjct: 147 DALFSDPVVLMDIGGVEYHGHTWELGPR-----KAKEILFTGRAMTAEEVAQTGMVNRVV 201
Query: 177 TTEEIE 182
+ ++
Sbjct: 202 PRDRLD 207
>pdb|3SWX|A Chain A, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3SWX|B Chain B, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3SWX|C Chain C, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
Length = 265
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 172
ATF RG+ P G +++ FPR G A + T +A EA + G V
Sbjct: 133 ATFAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGIV 184
>pdb|3VR6|D Chain D, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|E Chain E, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
pdb|3VR6|F Chain F, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 465
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 61 IAHIIQFLTPRSLILVDELCRAGIEPPPSCLP 92
I + ++T +IL EL ++GI+PP LP
Sbjct: 322 IPDLTGYITEGQIILTRELYKSGIQPPIDVLP 353
>pdb|1EF8|A Chain A, Crystal Structure Of Methylmalonyl Coa Decarboxylase
pdb|1EF8|B Chain B, Crystal Structure Of Methylmalonyl Coa Decarboxylase
pdb|1EF8|C Chain C, Crystal Structure Of Methylmalonyl Coa Decarboxylase
pdb|1EF9|A Chain A, The Crystal Structure Of Methylmalonyl Coa Decarboxylase
Complexed With 2s-Carboxypropyl Coa
Length = 261
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 144 RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLL 203
R G + EL++T + AQ AL G ++ V EE+E H ++ + ++++
Sbjct: 150 RDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVI 209
Query: 204 AHLMRGILRDGH 215
+R +L + H
Sbjct: 210 KEELR-VLGEAH 220
>pdb|3VR2|D Chain D, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|E Chain E, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|F Chain F, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|D Chain D, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|E Chain E, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|F Chain F, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|D Chain D, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|E Chain E, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|F Chain F, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|D Chain D, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|E Chain E, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|F Chain F, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 465
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 61 IAHIIQFLTPRSLILVDELCRAGIEPPPSCLP 92
I + ++T +IL EL ++GI+PP LP
Sbjct: 322 IPDLTGYITEGQIILTRELYKSGIQPPIDVLP 353
>pdb|2J3H|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Apo Form
pdb|2J3H|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Apo Form
pdb|2J3I|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Binary Complex
pdb|2J3I|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Binary Complex
pdb|2J3J|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex I
pdb|2J3J|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex I
pdb|2J3K|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex Ii
pdb|2J3K|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex Ii
Length = 345
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 3 GKSVYIKQV--ALLQIMAQ----VGCYVPASLAEFRLADHIYTRIGFNDS 46
G++VY+ A+ Q++ Q +GCYV S D + T+ GF+D+
Sbjct: 156 GETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDA 205
>pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase
Subunit Ii) From Geobacillus Kaustophilus
pdb|2EJ5|B Chain B, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase
Subunit Ii) From Geobacillus Kaustophilus
Length = 257
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A+F F G+ P+ PR+ G + A EL G K+ A+EA G + V
Sbjct: 124 KASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIPLS 183
Query: 180 EIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGHATT 218
+ E + + +A+ S + + L++ +LR+ TT
Sbjct: 184 DWEEE----VKQFAERLSAMPTKAIGLIKRLLRESEETT 218
>pdb|4F96|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F96|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F97|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F97|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F9F|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|C Chain C, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|D Chain D, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|E Chain E, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|F Chain F, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|3VDM|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDM|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDN|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
Length = 497
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 59 KEI-AHIIQFLTPRSLI--LVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHP 115
KEI I+ + P + I D CR +E LP R+D A T E +R L
Sbjct: 196 KEIRTGILHGMLPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLR-- 253
Query: 116 VFVLQATFHTPFTLRGMTPE 135
++P TL G P+
Sbjct: 254 ---TMPLGYSPLTLDGRNPQ 270
>pdb|3T5T|A Chain A, Vall From Streptomyces Hygroscopicus In Apo Form
pdb|3T5T|B Chain B, Vall From Streptomyces Hygroscopicus In Apo Form
Length = 496
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 59 KEI-AHIIQFLTPRSLI--LVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHP 115
KEI I+ + P + I D CR +E LP R+D A T E +R L
Sbjct: 195 KEIRTGILHGMLPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLR-- 252
Query: 116 VFVLQATFHTPFTLRGMTPE 135
++P TL G P+
Sbjct: 253 ---TMPLGYSPLTLDGRNPQ 269
>pdb|1HNO|A Chain A, Crystal Structure Of Peroxisomal Delta3-delta2-enoyl-coa
Isomerase From Saccharomyces Cerevisiae
pdb|1HNU|A Chain A, Crystal Structure Of Peroxisomal Delta3-Delta2-Enoyl-Coa
Isomerase From Saccharomyces Cerevisiae
pdb|1K39|A Chain A, The Structure Of Yeast Delta3-delta2-enoyl-coa Isomerase
Complexed With Octanoyl-coa
pdb|1K39|B Chain B, The Structure Of Yeast Delta3-delta2-enoyl-coa Isomerase
Complexed With Octanoyl-coa
pdb|1K39|C Chain C, The Structure Of Yeast Delta3-delta2-enoyl-coa Isomerase
Complexed With Octanoyl-coa
pdb|1PJH|A Chain A, Structural Studies On Delta3-Delta2-Enoyl-Coa Isomerase:
The Variable Mode Of Assembly Of The Trimeric Disks Of
The Crotonase Superfamily
pdb|1PJH|B Chain B, Structural Studies On Delta3-Delta2-Enoyl-Coa Isomerase:
The Variable Mode Of Assembly Of The Trimeric Disks Of
The Crotonase Superfamily
pdb|1PJH|C Chain C, Structural Studies On Delta3-Delta2-Enoyl-Coa Isomerase:
The Variable Mode Of Assembly Of The Trimeric Disks Of
The Crotonase Superfamily
Length = 280
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 112 LNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGF 171
+N V++L PF G+ EG ++V P FG + E L + + GF
Sbjct: 140 INDKVYLLY-----PFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGF 194
Query: 172 VSGVFT 177
+S F
Sbjct: 195 ISKNFN 200
>pdb|4DEX|A Chain A, Crystal Structure Of The Voltage Dependent Calcium Channel
Beta-2 Subunit In Complex With The Cav2.2 I-Ii Linker
Length = 339
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 45/121 (37%), Gaps = 5/121 (4%)
Query: 8 IKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQF 67
+++ A Q AQ+ +A F + ++ D + + E K+ H+ +
Sbjct: 19 VRREAERQAQAQLEKAKTKPVA-FAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEK 77
Query: 68 LTPRSLI--LVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFVLQATFHT 125
I LV E C G P P L RL H R E + P F + T HT
Sbjct: 78 FNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQRAKEFKLHSKEKRMPFF--KKTEHT 135
Query: 126 P 126
P
Sbjct: 136 P 136
>pdb|4IPA|A Chain A, Structure Of A Thermophilic Arx1
pdb|4IPA|B Chain B, Structure Of A Thermophilic Arx1
pdb|4IPA|C Chain C, Structure Of A Thermophilic Arx1
pdb|4IPA|D Chain D, Structure Of A Thermophilic Arx1
Length = 423
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 68 LTPRSLILVDELCRAGIEPPPSCLPGERL--DHYARTTEQVKNRVLLNHPVFVLQATFHT 125
++ + L V +LC G + C G++L + ++ K +HP V A F T
Sbjct: 35 ISEKVLAEVSKLCVPGAKIIDICEQGDKLMEEELSKVYRDKKTNKGFSHPTTVSPAAFIT 94
Query: 126 PFT-LRGMTPEGCSSV 140
P+T LR E + +
Sbjct: 95 PYTPLRSDEKEAATEI 110
>pdb|4DEY|A Chain A, Crystal Structure Of The Voltage Dependent Calcium Channel
Beta-2 Subunit In Complex With The Cav1.2 I-Ii Linker
Length = 337
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 45/121 (37%), Gaps = 5/121 (4%)
Query: 8 IKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQF 67
+++ A Q AQ+ +A F + ++ D + + E K+ H+ +
Sbjct: 17 VRREAERQAQAQLEKAKTKPVA-FAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEK 75
Query: 68 LTPRSLI--LVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFVLQATFHT 125
I LV E C G P P L RL H R E + P F + T HT
Sbjct: 76 FNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQRAKEFKLHSKEKRMPFF--KKTEHT 133
Query: 126 P 126
P
Sbjct: 134 P 134
>pdb|3L39|A Chain A, Crystal Structure Of Putative Phou-Like Phosphate
Regulatory Protein (Bt4638) From Bacteroides
Thetaiotaomicron Vpi-5482 At 1.93 A Resolution
Length = 227
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 91 LPGERLDHYARTTEQVKNRVLLNHPVF-VLQATFHTPF 127
LP ER D+Y + + + L H +F L TF TPF
Sbjct: 54 LPTERADYYKQIKDMEREGDRLTHLIFDELSTTFITPF 91
>pdb|2YA9|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YA9|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
pdb|2YAA|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAA|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Atp
pdb|2YAB|A Chain A, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
pdb|2YAB|B Chain B, Crystal Structure Of The Autoinhibited Form Of Mouse Dapk2
In Complex With Amp
Length = 361
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 157 TGRKLNAQEALQYGFVSGVFTTEEIER-------DLWPRIHA---WAKLSSCIVSLLAHL 206
T ++L QEAL++ +++ V T + + R + + + + W KLS IVSL HL
Sbjct: 261 TRKRLTIQEALRHPWITPVDTQQAMVRRESVVNLENFKKQYVRRRW-KLSFSIVSLCNHL 319
Query: 207 MRGILRDGHATT 218
R +++ H T
Sbjct: 320 TRSLMKKVHLRT 331
>pdb|1FRT|A Chain A, Crystal Structure Of The Complex Of Rat Neonatal Fc
Receptor With Fc
pdb|3FRU|A Chain A, Neonatal Fc Receptor, Ph 6.5
pdb|3FRU|C Chain C, Neonatal Fc Receptor, Ph 6.5
pdb|3FRU|E Chain E, Neonatal Fc Receptor, Ph 6.5
pdb|1I1A|A Chain A, Crystal Structure Of The Neonatal Fc Receptor Complexed
With A Heterodimeric Fc
Length = 269
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 21/123 (17%)
Query: 98 HYARTTEQVKNR-VLLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLY 156
++ + T +K++ L + L+ + FTL+G+ GC L P NS ++
Sbjct: 60 YWEKETTDLKSKEQLFLEAIRTLENQINGTFTLQGLL--GCE--LAPD---NSSLPTAVF 112
Query: 157 TGRKLNAQEALQYGFVSGVFTTEEIERD----LWPRIHAWAK------LSSCIVSLLAHL 206
LN +E +++ +G ++ E E D LW + A+ L+SC LL HL
Sbjct: 113 A---LNGEEFMRFNPRTGNWSGEWPETDIVGNLWMKQPEAARKESEFLLTSCPERLLGHL 169
Query: 207 MRG 209
RG
Sbjct: 170 ERG 172
>pdb|2PPY|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From
Geobacillus Kaustophilus Hta426
pdb|2PPY|B Chain B, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From
Geobacillus Kaustophilus Hta426
pdb|2PPY|C Chain C, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From
Geobacillus Kaustophilus Hta426
pdb|2PPY|D Chain D, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From
Geobacillus Kaustophilus Hta426
pdb|2PPY|E Chain E, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From
Geobacillus Kaustophilus Hta426
pdb|2PPY|F Chain F, Crystal Structure Of Enoyl-Coa Hydrates (Gk_1992) From
Geobacillus Kaustophilus Hta426
Length = 265
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 144 RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
R+ G S A + TG + QEAL+ G V+ VF E
Sbjct: 156 RLIGYSRALDXNITGETITPQEALEIGLVNRVFPQAE 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,984,193
Number of Sequences: 62578
Number of extensions: 214643
Number of successful extensions: 729
Number of sequences better than 100.0: 73
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 664
Number of HSP's gapped (non-prelim): 73
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)