Query psy7339
Match_columns 223
No_of_seqs 285 out of 1998
Neff 9.1
Searched_HMMs 46136
Date Sat Aug 17 00:13:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7339.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7339hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1680|consensus 100.0 1.7E-36 3.7E-41 240.0 12.7 181 33-216 43-253 (290)
2 PRK09120 p-hydroxycinnamoyl Co 100.0 1.4E-35 3.1E-40 244.1 16.5 187 29-215 10-229 (275)
3 PRK05980 enoyl-CoA hydratase; 100.0 2.4E-35 5.1E-40 241.3 15.6 187 28-214 4-224 (260)
4 PLN02888 enoyl-CoA hydratase 100.0 3.9E-35 8.5E-40 240.3 15.7 192 23-214 5-223 (265)
5 PRK09674 enoyl-CoA hydratase-i 100.0 3.6E-35 7.7E-40 239.5 15.3 185 30-214 5-216 (255)
6 PRK06142 enoyl-CoA hydratase; 100.0 4E-35 8.7E-40 241.4 15.7 188 27-214 6-234 (272)
7 PRK06190 enoyl-CoA hydratase; 100.0 4.1E-35 8.9E-40 239.1 15.4 189 27-215 4-219 (258)
8 PRK06143 enoyl-CoA hydratase; 100.0 6.6E-35 1.4E-39 237.9 16.4 188 27-215 6-224 (256)
9 PLN02600 enoyl-CoA hydratase 100.0 6E-35 1.3E-39 237.6 15.6 179 35-213 3-211 (251)
10 PRK05862 enoyl-CoA hydratase; 100.0 5.1E-35 1.1E-39 238.9 15.2 187 28-214 5-218 (257)
11 PRK06127 enoyl-CoA hydratase; 100.0 6.6E-35 1.4E-39 239.6 15.9 190 24-213 8-229 (269)
12 PRK08140 enoyl-CoA hydratase; 100.0 6.7E-35 1.4E-39 238.9 15.8 187 28-215 5-224 (262)
13 PRK08150 enoyl-CoA hydratase; 100.0 7.7E-35 1.7E-39 237.4 15.4 182 29-212 4-214 (255)
14 PRK07327 enoyl-CoA hydratase; 100.0 2E-34 4.2E-39 236.7 17.7 183 28-210 12-226 (268)
15 PRK06563 enoyl-CoA hydratase; 100.0 7.3E-35 1.6E-39 237.8 15.0 183 31-213 3-215 (255)
16 PRK09245 enoyl-CoA hydratase; 100.0 1.4E-34 3E-39 237.5 16.5 185 29-213 5-226 (266)
17 PRK06494 enoyl-CoA hydratase; 100.0 1E-34 2.2E-39 237.4 15.5 184 29-212 6-216 (259)
18 TIGR03210 badI 2-ketocyclohexa 100.0 1.6E-34 3.5E-39 235.8 16.5 183 29-211 4-215 (256)
19 PRK08138 enoyl-CoA hydratase; 100.0 1.7E-34 3.6E-39 236.3 16.7 185 29-213 9-221 (261)
20 PLN02664 enoyl-CoA hydratase/d 100.0 1.5E-34 3.3E-39 238.2 16.0 184 30-213 11-235 (275)
21 TIGR02280 PaaB1 phenylacetate 100.0 1.9E-34 4.2E-39 235.4 16.3 181 32-213 4-216 (256)
22 PRK08252 enoyl-CoA hydratase; 100.0 1.8E-34 3.8E-39 235.3 15.9 184 28-212 4-213 (254)
23 TIGR01929 menB naphthoate synt 100.0 2.1E-34 4.6E-39 235.4 16.3 182 29-210 4-217 (259)
24 PRK09076 enoyl-CoA hydratase; 100.0 1.9E-34 4.2E-39 235.6 15.6 183 29-212 5-217 (258)
25 PRK07260 enoyl-CoA hydratase; 100.0 2.2E-34 4.8E-39 234.9 15.6 187 29-215 4-223 (255)
26 PRK07658 enoyl-CoA hydratase; 100.0 1.9E-34 4E-39 235.7 15.1 183 29-212 4-216 (257)
27 PRK05869 enoyl-CoA hydratase; 100.0 5.4E-34 1.2E-38 227.8 17.3 177 34-211 15-220 (222)
28 PRK07799 enoyl-CoA hydratase; 100.0 1.8E-34 3.8E-39 236.5 14.9 184 29-212 7-222 (263)
29 PRK06023 enoyl-CoA hydratase; 100.0 3E-34 6.5E-39 233.6 15.9 182 29-210 5-217 (251)
30 PRK07657 enoyl-CoA hydratase; 100.0 3.4E-34 7.5E-39 234.4 16.3 186 28-213 4-220 (260)
31 PRK06144 enoyl-CoA hydratase; 100.0 4E-34 8.6E-39 234.2 16.6 185 28-212 9-225 (262)
32 PRK08258 enoyl-CoA hydratase; 100.0 3.5E-34 7.6E-39 236.3 16.0 187 29-215 19-239 (277)
33 PRK05809 3-hydroxybutyryl-CoA 100.0 3.4E-34 7.5E-39 234.5 15.6 185 29-213 6-220 (260)
34 PRK05870 enoyl-CoA hydratase; 100.0 3.2E-34 6.9E-39 233.2 15.0 182 29-212 5-215 (249)
35 PRK07511 enoyl-CoA hydratase; 100.0 3.8E-34 8.3E-39 234.2 15.5 185 29-213 5-221 (260)
36 PRK08139 enoyl-CoA hydratase; 100.0 3.7E-34 7.9E-39 234.8 15.3 185 28-213 12-226 (266)
37 PRK08259 enoyl-CoA hydratase; 100.0 2.7E-34 5.8E-39 234.1 14.4 186 29-214 5-217 (254)
38 PRK05864 enoyl-CoA hydratase; 100.0 1.2E-33 2.6E-38 233.0 18.3 183 28-210 10-230 (276)
39 PRK05674 gamma-carboxygeranoyl 100.0 5.9E-34 1.3E-38 233.5 15.9 186 29-215 7-225 (265)
40 PRK06688 enoyl-CoA hydratase; 100.0 4.5E-34 9.8E-39 233.7 14.7 188 27-214 5-220 (259)
41 PRK05981 enoyl-CoA hydratase; 100.0 7.5E-34 1.6E-38 233.2 15.3 188 28-215 5-228 (266)
42 PRK05995 enoyl-CoA hydratase; 100.0 1.7E-33 3.7E-38 230.6 17.4 187 28-215 5-223 (262)
43 PRK07110 polyketide biosynthes 100.0 8.3E-34 1.8E-38 230.7 15.2 185 30-216 8-220 (249)
44 PRK07659 enoyl-CoA hydratase; 100.0 9.3E-34 2E-38 231.8 15.1 186 28-215 7-222 (260)
45 PRK08260 enoyl-CoA hydratase; 100.0 1.9E-33 4.2E-38 233.8 17.0 184 28-211 5-235 (296)
46 PRK03580 carnitinyl-CoA dehydr 100.0 1.7E-33 3.7E-38 230.4 15.6 183 29-212 5-216 (261)
47 PRK06210 enoyl-CoA hydratase; 100.0 1.3E-33 2.9E-38 232.4 14.6 186 28-213 6-232 (272)
48 PF00378 ECH: Enoyl-CoA hydrat 100.0 1.1E-33 2.5E-38 229.6 13.4 185 31-215 2-215 (245)
49 PRK07396 dihydroxynaphthoic ac 100.0 4.7E-33 1E-37 229.1 16.5 183 28-210 14-227 (273)
50 PRK07468 enoyl-CoA hydratase; 100.0 3.8E-33 8.3E-38 228.4 15.8 181 29-210 6-219 (262)
51 PRK11423 methylmalonyl-CoA dec 100.0 4.5E-33 9.7E-38 227.8 16.0 182 28-210 5-216 (261)
52 COG1024 CaiD Enoyl-CoA hydrata 100.0 7.8E-33 1.7E-37 226.1 15.5 185 29-214 7-222 (257)
53 PLN03214 probable enoyl-CoA hy 100.0 6.9E-33 1.5E-37 228.3 14.9 187 28-215 12-233 (278)
54 PRK06495 enoyl-CoA hydratase; 100.0 1.2E-32 2.6E-37 224.9 15.9 181 29-213 6-217 (257)
55 PRK07938 enoyl-CoA hydratase; 100.0 1.3E-32 2.8E-37 223.6 15.5 177 34-214 9-215 (249)
56 PLN02921 naphthoate synthase 100.0 1.9E-32 4.2E-37 229.5 16.8 177 35-211 75-282 (327)
57 TIGR03189 dienoyl_CoA_hyt cycl 100.0 2.5E-32 5.3E-37 222.1 16.9 183 29-215 3-212 (251)
58 PRK07509 enoyl-CoA hydratase; 100.0 2.3E-32 5E-37 223.9 15.4 186 27-214 3-224 (262)
59 PRK07854 enoyl-CoA hydratase; 100.0 6.5E-32 1.4E-36 218.7 16.7 175 30-210 3-202 (243)
60 PRK08290 enoyl-CoA hydratase; 100.0 1E-31 2.2E-36 222.5 17.9 185 27-213 4-239 (288)
61 PRK08321 naphthoate synthase; 100.0 1E-31 2.2E-36 223.8 17.0 177 34-210 32-256 (302)
62 PRK06072 enoyl-CoA hydratase; 100.0 5.8E-32 1.3E-36 219.7 14.9 181 31-215 4-210 (248)
63 PRK06213 enoyl-CoA hydratase; 100.0 6.8E-32 1.5E-36 217.0 14.9 188 29-219 5-221 (229)
64 PRK08272 enoyl-CoA hydratase; 100.0 1.2E-31 2.6E-36 223.7 16.2 183 28-213 11-247 (302)
65 PRK12478 enoyl-CoA hydratase; 100.0 1.4E-31 3.1E-36 222.5 16.1 180 29-212 7-231 (298)
66 PRK05617 3-hydroxyisobutyryl-C 100.0 9.8E-32 2.1E-36 227.2 15.3 185 28-213 4-284 (342)
67 PRK07827 enoyl-CoA hydratase; 100.0 1.6E-31 3.5E-36 218.6 15.6 185 28-215 7-223 (260)
68 PRK08788 enoyl-CoA hydratase; 100.0 1.1E-31 2.4E-36 221.3 14.4 179 30-210 20-240 (287)
69 PLN02157 3-hydroxyisobutyryl-C 100.0 7.8E-31 1.7E-35 224.3 15.8 182 27-210 37-251 (401)
70 PLN02874 3-hydroxyisobutyryl-C 100.0 7E-31 1.5E-35 224.5 14.4 184 28-212 12-293 (379)
71 TIGR03200 dearomat_oah 6-oxocy 100.0 2E-30 4.4E-35 216.2 15.8 186 25-210 24-258 (360)
72 PLN02267 enoyl-CoA hydratase/i 100.0 5.9E-30 1.3E-34 206.6 16.2 183 31-214 4-223 (239)
73 PRK07112 polyketide biosynthes 100.0 6.3E-30 1.4E-34 208.6 15.7 178 28-210 5-213 (255)
74 KOG1681|consensus 100.0 1.7E-30 3.7E-35 200.0 9.5 183 33-215 28-253 (292)
75 PRK08184 benzoyl-CoA-dihydrodi 100.0 1.9E-29 4.1E-34 223.5 16.7 186 32-217 267-508 (550)
76 TIGR03222 benzo_boxC benzoyl-C 100.0 2.7E-29 5.8E-34 221.9 16.8 185 32-216 263-503 (546)
77 PRK11730 fadB multifunctional 100.0 7.1E-29 1.5E-33 227.4 17.3 168 28-195 7-207 (715)
78 PLN02988 3-hydroxyisobutyryl-C 100.0 6.8E-29 1.5E-33 211.6 15.5 179 29-209 11-222 (381)
79 KOG1679|consensus 100.0 1.3E-28 2.8E-33 188.2 11.3 181 35-215 39-253 (291)
80 PRK11154 fadJ multifunctional 100.0 3.7E-28 7.9E-33 222.7 15.7 188 28-215 6-263 (708)
81 KOG0016|consensus 100.0 2.1E-27 4.6E-32 186.6 15.0 190 30-219 10-236 (266)
82 TIGR02440 FadJ fatty oxidation 100.0 9.9E-28 2.1E-32 219.4 15.1 168 34-201 8-222 (699)
83 PLN02851 3-hydroxyisobutyryl-C 99.9 1E-26 2.2E-31 198.9 15.9 170 29-200 44-246 (407)
84 TIGR02437 FadB fatty oxidation 99.9 4.8E-27 1E-31 215.0 14.5 166 29-194 8-206 (714)
85 TIGR03222 benzo_boxC benzoyl-C 99.9 2E-26 4.4E-31 203.7 15.0 172 27-198 11-232 (546)
86 COG0447 MenB Dihydroxynaphthoi 99.9 2.5E-26 5.4E-31 175.9 12.3 180 29-210 20-236 (282)
87 cd06558 crotonase-like Crotona 99.9 2.9E-26 6.3E-31 179.9 13.0 161 31-191 3-194 (195)
88 TIGR02441 fa_ox_alpha_mit fatt 99.9 7.5E-26 1.6E-30 207.7 14.7 167 28-194 14-227 (737)
89 PRK08184 benzoyl-CoA-dihydrodi 99.9 1.6E-25 3.6E-30 198.4 14.7 173 27-199 15-237 (550)
90 KOG1682|consensus 99.9 1.9E-22 4.2E-27 153.2 14.1 186 25-211 30-245 (287)
91 COG0249 MutS Mismatch repair A 99.9 5.8E-23 1.3E-27 189.1 7.4 101 1-101 617-717 (843)
92 PF00488 MutS_V: MutS domain V 99.9 1.4E-22 3E-27 163.1 6.4 101 1-101 53-153 (235)
93 TIGR01070 mutS1 DNA mismatch r 99.8 8.9E-21 1.9E-25 176.0 8.3 101 1-101 602-702 (840)
94 KOG0220|consensus 99.8 9E-21 1.9E-25 166.3 6.1 100 1-100 631-730 (867)
95 PRK05399 DNA mismatch repair p 99.8 1E-19 2.2E-24 169.7 8.3 101 1-101 617-717 (854)
96 KOG1684|consensus 99.8 1.1E-18 2.3E-23 143.3 12.8 163 38-201 50-245 (401)
97 KOG0218|consensus 99.8 3.5E-20 7.5E-25 162.8 4.2 117 1-118 840-956 (1070)
98 cd03286 ABC_MSH6_euk MutS6 hom 99.8 1E-18 2.2E-23 139.0 8.6 101 1-101 40-140 (218)
99 cd03287 ABC_MSH3_euk MutS3 hom 99.7 1.8E-17 4E-22 132.1 8.1 101 1-101 41-141 (222)
100 KOG0219|consensus 99.7 3.6E-17 7.8E-22 145.7 6.9 99 1-99 655-753 (902)
101 KOG0221|consensus 99.7 1.1E-17 2.5E-22 145.0 0.0 101 2-102 610-710 (849)
102 smart00534 MUTSac ATPase domai 99.6 3.3E-16 7.1E-21 122.0 7.4 89 1-89 9-97 (185)
103 cd03285 ABC_MSH2_euk MutS2 hom 99.6 6.2E-16 1.4E-20 123.6 8.1 99 1-99 40-138 (222)
104 KOG0217|consensus 99.6 1.1E-16 2.4E-21 145.4 2.7 102 1-102 909-1010(1125)
105 cd03282 ABC_MSH4_euk MutS4 hom 99.6 8.6E-16 1.9E-20 121.2 6.8 100 1-100 39-138 (204)
106 PRK00409 recombination and DNA 99.6 1.5E-15 3.2E-20 140.7 7.1 99 1-99 337-436 (782)
107 cd03281 ABC_MSH5_euk MutS5 hom 99.6 2.5E-15 5.4E-20 119.5 7.2 99 1-99 39-137 (213)
108 cd03284 ABC_MutS1 MutS1 homolo 99.6 6.4E-15 1.4E-19 117.3 7.1 91 1-91 40-130 (216)
109 cd03243 ABC_MutS_homologs The 99.4 1.4E-12 3.1E-17 102.9 7.7 86 1-86 39-124 (202)
110 cd03280 ABC_MutS2 MutS2 homolo 99.4 3E-12 6.6E-17 100.8 8.2 86 1-86 38-124 (200)
111 TIGR01069 mutS2 MutS2 family p 99.3 2.1E-12 4.6E-17 119.6 6.3 100 1-100 332-432 (771)
112 cd03283 ABC_MutS-like MutS-lik 99.3 1.5E-11 3.2E-16 96.8 7.0 85 1-86 35-121 (199)
113 cd07014 S49_SppA Signal peptid 99.2 3.7E-11 8E-16 92.9 7.3 121 53-184 22-175 (177)
114 cd07020 Clp_protease_NfeD_1 No 99.1 7.6E-10 1.7E-14 86.3 8.7 66 119-184 90-172 (187)
115 COG1193 Mismatch repair ATPase 98.9 3.8E-10 8.1E-15 103.6 2.8 97 1-99 327-424 (753)
116 TIGR00705 SppA_67K signal pept 98.6 6.8E-08 1.5E-12 87.4 5.7 124 54-195 330-524 (584)
117 cd03227 ABC_Class2 ABC-type Cl 98.5 3.7E-07 8E-12 69.5 6.4 74 1-87 31-116 (162)
118 cd07019 S49_SppA_1 Signal pept 98.4 2E-06 4.3E-11 68.3 8.9 56 52-118 20-75 (211)
119 cd07016 S14_ClpP_1 Caseinolyti 98.3 2.1E-06 4.6E-11 65.1 7.0 106 53-175 15-160 (160)
120 cd00394 Clp_protease_like Case 98.3 3.4E-06 7.3E-11 64.0 7.4 110 52-175 10-161 (161)
121 cd07018 S49_SppA_67K_type Sign 98.0 7.8E-05 1.7E-09 59.7 10.5 58 50-118 26-83 (222)
122 cd07022 S49_Sppa_36K_type Sign 97.8 0.00022 4.7E-09 56.8 9.0 28 51-78 23-50 (214)
123 TIGR00706 SppA_dom signal pept 97.7 0.00025 5.5E-09 56.1 9.1 33 155-187 172-204 (207)
124 cd07023 S49_Sppa_N_C Signal pe 97.6 0.00054 1.2E-08 54.2 8.6 57 51-118 15-71 (208)
125 cd07013 S14_ClpP Caseinolytic 97.4 0.0012 2.6E-08 50.2 8.4 108 52-175 11-162 (162)
126 PRK00277 clpP ATP-dependent Cl 97.1 0.0044 9.6E-08 48.8 8.6 60 119-178 113-196 (200)
127 CHL00028 clpP ATP-dependent Cl 96.6 0.015 3.2E-07 45.7 8.3 60 120-179 113-197 (200)
128 PRK12553 ATP-dependent Clp pro 96.3 0.03 6.5E-07 44.3 8.6 111 52-178 46-202 (207)
129 cd07021 Clp_protease_NfeD_like 96.1 0.039 8.5E-07 42.6 7.8 23 160-182 153-176 (178)
130 cd07015 Clp_protease_NfeD Nodu 96.1 0.066 1.4E-06 41.1 8.9 35 148-182 135-170 (172)
131 PRK14512 ATP-dependent Clp pro 96.0 0.061 1.3E-06 42.2 8.9 63 120-182 106-193 (197)
132 PRK10949 protease 4; Provision 95.7 0.098 2.1E-06 48.2 9.8 35 155-189 506-540 (618)
133 COG0740 ClpP Protease subunit 95.6 0.11 2.3E-06 40.7 8.4 62 119-180 109-194 (200)
134 PRK12551 ATP-dependent Clp pro 95.4 0.16 3.5E-06 39.8 9.0 60 120-179 108-191 (196)
135 PRK14514 ATP-dependent Clp pro 95.4 0.16 3.5E-06 40.6 8.9 58 120-177 137-218 (221)
136 PRK12319 acetyl-CoA carboxylas 95.0 0.23 5E-06 40.6 9.1 63 112-178 135-214 (256)
137 PLN03229 acetyl-coenzyme A car 95.0 0.71 1.5E-05 42.9 12.8 141 55-204 228-397 (762)
138 cd07017 S14_ClpP_2 Caseinolyti 94.9 0.13 2.7E-06 39.4 7.0 55 121-175 93-171 (171)
139 PRK05724 acetyl-CoA carboxylas 94.8 0.26 5.6E-06 41.5 9.1 65 111-178 187-267 (319)
140 CHL00198 accA acetyl-CoA carbo 94.7 0.26 5.7E-06 41.5 8.7 65 111-178 190-270 (322)
141 PLN03230 acetyl-coenzyme A car 94.4 0.3 6.6E-06 42.4 8.6 91 111-204 257-376 (431)
142 TIGR00513 accA acetyl-CoA carb 94.4 0.36 7.8E-06 40.6 8.8 64 112-178 188-267 (316)
143 TIGR00493 clpP ATP-dependent C 94.1 0.42 9.2E-06 37.3 8.2 57 121-177 110-190 (191)
144 KOG1683|consensus 93.9 0.023 5.1E-07 48.1 0.9 148 50-197 79-261 (380)
145 cd00544 CobU Adenosylcobinamid 93.8 0.051 1.1E-06 41.6 2.5 137 1-149 9-147 (169)
146 TIGR03134 malonate_gamma malon 93.5 0.22 4.7E-06 40.3 5.9 67 112-180 106-191 (238)
147 PRK10949 protease 4; Provision 93.0 2.6 5.6E-05 39.0 12.6 56 53-118 95-150 (618)
148 COG0825 AccA Acetyl-CoA carbox 92.8 0.72 1.6E-05 38.1 7.7 45 131-178 222-266 (317)
149 PRK12552 ATP-dependent Clp pro 92.6 1.7 3.8E-05 34.7 9.6 120 54-178 53-214 (222)
150 TIGR00705 SppA_67K signal pept 92.5 1.7 3.8E-05 39.9 10.8 56 53-118 76-131 (584)
151 PF01343 Peptidase_S49: Peptid 91.4 0.087 1.9E-06 39.6 1.0 34 155-188 117-150 (154)
152 PRK05654 acetyl-CoA carboxylas 90.1 5.1 0.00011 33.5 10.3 35 162-196 250-284 (292)
153 TIGR00515 accD acetyl-CoA carb 88.8 6.5 0.00014 32.7 10.1 33 162-194 249-281 (285)
154 PF00004 AAA: ATPase family as 88.7 1.9 4.2E-05 30.5 6.3 67 1-86 8-74 (132)
155 PRK14513 ATP-dependent Clp pro 86.8 0.66 1.4E-05 36.5 2.9 59 121-179 111-193 (201)
156 PRK09361 radB DNA repair and r 86.2 1.2 2.6E-05 35.3 4.3 27 1-27 33-60 (225)
157 TIGR01117 mmdA methylmalonyl-C 86.2 10 0.00022 34.4 10.5 75 119-193 414-496 (512)
158 PRK11778 putative inner membra 85.7 0.96 2.1E-05 38.4 3.5 35 153-187 261-295 (330)
159 PF05729 NACHT: NACHT domain 85.3 1.2 2.5E-05 33.0 3.6 16 1-16 10-25 (166)
160 cd01123 Rad51_DMC1_radA Rad51_ 84.6 1 2.2E-05 35.9 3.1 28 57-84 102-129 (235)
161 smart00250 PLEC Plectin repeat 84.0 0.9 2E-05 25.4 1.9 18 157-174 18-35 (38)
162 cd01393 recA_like RecA is a b 84.0 2.4 5.3E-05 33.4 5.1 18 1-18 29-46 (226)
163 smart00382 AAA ATPases associa 83.9 0.87 1.9E-05 32.1 2.3 31 54-85 63-93 (148)
164 COG0777 AccD Acetyl-CoA carbox 83.8 12 0.00026 30.9 8.8 69 119-197 218-286 (294)
165 PRK05800 cobU adenosylcobinami 83.7 0.63 1.4E-05 35.5 1.5 28 122-149 120-147 (170)
166 PF02367 UPF0079: Uncharacteri 83.6 0.72 1.6E-05 33.3 1.7 29 1-34 25-53 (123)
167 PF01580 FtsK_SpoIIIE: FtsK/Sp 83.4 0.88 1.9E-05 35.6 2.2 17 1-17 48-64 (205)
168 COG2087 CobU Adenosyl cobinami 83.0 0.98 2.1E-05 34.3 2.2 130 1-148 10-150 (175)
169 PLN03187 meiotic recombination 82.6 3.1 6.7E-05 35.6 5.4 17 1-17 136-152 (344)
170 COG1126 GlnQ ABC-type polar am 82.6 0.7 1.5E-05 36.8 1.4 12 1-12 38-49 (240)
171 TIGR02238 recomb_DMC1 meiotic 82.6 3 6.6E-05 35.2 5.3 18 1-18 106-123 (313)
172 COG0468 RecA RecA/RadA recombi 81.6 4.7 0.0001 33.4 5.9 128 1-131 70-211 (279)
173 PF13401 AAA_22: AAA domain; P 81.5 0.64 1.4E-05 33.2 0.8 17 1-17 14-30 (131)
174 PF13481 AAA_25: AAA domain; P 81.2 1.9 4.1E-05 33.1 3.4 29 57-85 128-156 (193)
175 COG1030 NfeD Membrane-bound se 81.0 23 0.0005 31.2 10.1 35 148-182 158-193 (436)
176 PRK10646 ADP-binding protein; 80.9 1.5 3.2E-05 33.0 2.6 15 1-15 38-52 (153)
177 TIGR02836 spore_IV_A stage IV 80.3 4.4 9.6E-05 35.7 5.5 36 2-37 28-89 (492)
178 COG4598 HisP ABC-type histidin 79.7 1.1 2.5E-05 34.8 1.6 14 1-14 42-55 (256)
179 cd00984 DnaB_C DnaB helicase C 79.3 6.6 0.00014 31.3 6.1 27 55-81 108-134 (242)
180 TIGR02012 tigrfam_recA protein 79.1 9.7 0.00021 32.3 7.1 29 56-84 119-147 (321)
181 cd00983 recA RecA is a bacter 78.9 11 0.00024 32.1 7.4 29 56-84 119-147 (325)
182 COG1117 PstB ABC-type phosphat 78.9 1.1 2.4E-05 35.8 1.3 15 1-15 43-57 (253)
183 PF13555 AAA_29: P-loop contai 78.9 1.6 3.5E-05 27.4 1.9 16 1-16 33-48 (62)
184 PF00681 Plectin: Plectin repe 78.4 0.7 1.5E-05 27.0 0.1 19 156-174 17-35 (45)
185 COG4619 ABC-type uncharacteriz 78.1 1.3 2.8E-05 34.1 1.5 14 1-14 39-52 (223)
186 PRK11889 flhF flagellar biosyn 78.1 2.7 5.9E-05 36.8 3.6 80 1-83 251-333 (436)
187 PRK06731 flhF flagellar biosyn 77.8 2.5 5.5E-05 34.9 3.2 82 1-83 85-167 (270)
188 TIGR00150 HI0065_YjeE ATPase, 77.7 2.1 4.5E-05 31.4 2.4 14 1-14 32-45 (133)
189 PRK04301 radA DNA repair and r 77.3 7.2 0.00016 32.8 5.9 17 1-17 112-128 (317)
190 PTZ00035 Rad51 protein; Provis 77.3 4.1 8.8E-05 34.8 4.4 16 1-16 128-143 (337)
191 PRK09354 recA recombinase A; P 77.3 15 0.00033 31.5 7.8 74 1-84 70-152 (349)
192 PF04665 Pox_A32: Poxvirus A32 77.0 3 6.5E-05 33.8 3.4 13 1-13 23-35 (241)
193 PF00005 ABC_tran: ABC transpo 76.9 1.2 2.7E-05 32.0 1.1 12 1-12 21-32 (137)
194 COG3839 MalK ABC-type sugar tr 76.2 1.5 3.2E-05 37.4 1.5 12 1-12 39-50 (338)
195 COG1120 FepC ABC-type cobalami 76.2 1.5 3.3E-05 35.9 1.4 13 1-13 38-50 (258)
196 PF00574 CLP_protease: Clp pro 76.0 1.1 2.4E-05 34.4 0.6 56 122-177 101-180 (182)
197 PF13173 AAA_14: AAA domain 75.2 5.5 0.00012 28.5 4.1 16 1-16 12-27 (128)
198 PF13207 AAA_17: AAA domain; P 75.2 1.9 4E-05 30.3 1.6 15 1-15 9-23 (121)
199 COG1121 ZnuC ABC-type Mn/Zn tr 75.1 1.7 3.7E-05 35.5 1.5 12 1-12 40-51 (254)
200 PF13238 AAA_18: AAA domain; P 74.6 2.2 4.8E-05 30.0 1.9 15 1-15 8-22 (129)
201 cd03228 ABCC_MRP_Like The MRP 74.3 1.9 4.1E-05 32.7 1.5 13 1-13 38-50 (171)
202 TIGR02211 LolD_lipo_ex lipopro 73.6 1.9 4.2E-05 34.0 1.5 12 1-12 41-52 (221)
203 cd00267 ABC_ATPase ABC (ATP-bi 73.3 2 4.3E-05 31.9 1.4 12 1-12 35-46 (157)
204 cd03226 ABC_cobalt_CbiO_domain 73.3 1.9 4.2E-05 33.6 1.4 12 1-12 36-47 (205)
205 PF03796 DnaB_C: DnaB-like hel 73.2 7.3 0.00016 31.6 4.9 18 2-19 30-47 (259)
206 PF02492 cobW: CobW/HypB/UreG, 73.1 2.2 4.7E-05 32.7 1.6 13 1-13 10-22 (178)
207 cd03269 ABC_putative_ATPase Th 72.7 2.1 4.6E-05 33.5 1.5 12 1-12 36-47 (210)
208 cd03229 ABC_Class3 This class 72.7 2.1 4.6E-05 32.6 1.5 12 1-12 36-47 (178)
209 cd03268 ABC_BcrA_bacitracin_re 72.6 2.1 4.6E-05 33.4 1.5 12 1-12 36-47 (208)
210 cd03293 ABC_NrtD_SsuB_transpor 72.6 2.1 4.5E-05 33.8 1.4 12 1-12 40-51 (220)
211 COG2884 FtsE Predicted ATPase 72.4 2.2 4.8E-05 33.4 1.5 15 1-15 38-52 (223)
212 cd03255 ABC_MJ0796_Lo1CDE_FtsE 72.4 2.1 4.6E-05 33.6 1.5 12 1-12 40-51 (218)
213 cd03271 ABC_UvrA_II The excisi 72.4 12 0.00027 30.7 5.9 22 1-22 31-52 (261)
214 cd03266 ABC_NatA_sodium_export 72.4 2.1 4.6E-05 33.6 1.5 12 1-12 41-52 (218)
215 cd03292 ABC_FtsE_transporter F 72.4 2.1 4.7E-05 33.5 1.5 12 1-12 37-48 (214)
216 cd03216 ABC_Carb_Monos_I This 72.3 2.2 4.8E-05 32.1 1.5 12 1-12 36-47 (163)
217 cd03230 ABC_DR_subfamily_A Thi 72.3 2.2 4.7E-05 32.4 1.4 12 1-12 36-47 (173)
218 cd03222 ABC_RNaseL_inhibitor T 72.1 2.1 4.5E-05 32.9 1.3 67 1-82 35-101 (177)
219 cd03247 ABCC_cytochrome_bd The 72.1 2.2 4.8E-05 32.5 1.4 12 1-12 38-49 (178)
220 cd03246 ABCC_Protease_Secretio 72.1 2.3 5E-05 32.3 1.5 12 1-12 38-49 (173)
221 KOG0085|consensus 72.0 2.1 4.7E-05 34.5 1.4 14 2-15 50-63 (359)
222 COG3842 PotA ABC-type spermidi 71.9 2.2 4.7E-05 36.6 1.5 12 1-12 41-52 (352)
223 cd03225 ABC_cobalt_CbiO_domain 71.9 2.2 4.8E-05 33.3 1.5 12 1-12 37-48 (211)
224 PF13671 AAA_33: AAA domain; P 71.9 2.4 5.3E-05 30.6 1.6 12 1-12 9-20 (143)
225 TIGR01166 cbiO cobalt transpor 71.9 2.2 4.8E-05 32.8 1.4 12 1-12 28-39 (190)
226 cd03262 ABC_HisP_GlnQ_permease 71.8 2.3 4.9E-05 33.3 1.5 12 1-12 36-47 (213)
227 cd03219 ABC_Mj1267_LivG_branch 71.7 2.1 4.4E-05 34.2 1.2 12 1-12 36-47 (236)
228 TIGR00960 3a0501s02 Type II (G 71.6 2.2 4.9E-05 33.5 1.4 12 1-12 39-50 (216)
229 cd03215 ABC_Carb_Monos_II This 71.4 2.3 4.9E-05 32.6 1.4 12 1-12 36-47 (182)
230 TIGR03608 L_ocin_972_ABC putat 71.4 2.4 5.1E-05 33.0 1.5 12 1-12 34-45 (206)
231 PRK15177 Vi polysaccharide exp 71.4 2.3 5E-05 33.5 1.5 13 1-13 23-35 (213)
232 cd03265 ABC_DrrA DrrA is the A 71.4 2.3 5.1E-05 33.5 1.5 12 1-12 36-47 (220)
233 cd03259 ABC_Carb_Solutes_like 71.3 2.3 5.1E-05 33.3 1.5 12 1-12 36-47 (213)
234 cd03218 ABC_YhbG The ABC trans 71.3 2.3 5E-05 33.8 1.5 12 1-12 36-47 (232)
235 PRK14723 flhF flagellar biosyn 71.3 5 0.00011 38.0 3.8 76 1-83 195-276 (767)
236 cd03260 ABC_PstB_phosphate_tra 71.3 2.4 5.1E-05 33.6 1.5 12 1-12 36-47 (227)
237 PF08477 Miro: Miro-like prote 71.3 2.6 5.7E-05 29.3 1.6 16 1-16 9-24 (119)
238 cd03296 ABC_CysA_sulfate_impor 71.3 2.3 5E-05 34.0 1.4 12 1-12 38-49 (239)
239 TIGR02236 recomb_radA DNA repa 71.2 14 0.0003 30.9 6.2 17 1-17 105-121 (310)
240 TIGR02673 FtsE cell division A 71.2 2.3 5.1E-05 33.3 1.4 12 1-12 38-49 (214)
241 cd03264 ABC_drug_resistance_li 71.0 2.4 5.2E-05 33.2 1.5 12 1-12 35-46 (211)
242 PRK13540 cytochrome c biogenes 71.0 2.4 5.3E-05 32.9 1.5 12 1-12 37-48 (200)
243 TIGR01277 thiQ thiamine ABC tr 70.9 2.4 5.2E-05 33.3 1.5 12 1-12 34-45 (213)
244 TIGR03410 urea_trans_UrtE urea 70.8 2.3 5E-05 33.8 1.4 12 1-12 36-47 (230)
245 COG0410 LivF ABC-type branched 70.8 2.5 5.3E-05 34.0 1.4 12 1-12 39-50 (237)
246 TIGR02315 ABC_phnC phosphonate 70.7 2.4 5.2E-05 33.9 1.4 12 1-12 38-49 (243)
247 cd03263 ABC_subfamily_A The AB 70.7 2.5 5.3E-05 33.3 1.5 12 1-12 38-49 (220)
248 cd03236 ABC_RNaseL_inhibitor_d 70.5 2.5 5.4E-05 34.5 1.5 12 1-12 36-47 (255)
249 cd03301 ABC_MalK_N The N-termi 70.5 2.5 5.5E-05 33.1 1.5 12 1-12 36-47 (213)
250 cd03257 ABC_NikE_OppD_transpor 70.5 2.4 5.3E-05 33.5 1.4 12 1-12 41-52 (228)
251 cd03214 ABC_Iron-Siderophores_ 70.5 2.6 5.5E-05 32.2 1.5 12 1-12 35-46 (180)
252 cd02025 PanK Pantothenate kina 70.5 3.1 6.8E-05 33.1 2.0 14 1-14 9-22 (220)
253 cd03235 ABC_Metallic_Cations A 70.4 2.2 4.9E-05 33.4 1.2 12 1-12 35-46 (213)
254 cd03258 ABC_MetN_methionine_tr 70.4 2.5 5.4E-05 33.6 1.5 12 1-12 41-52 (233)
255 cd03232 ABC_PDR_domain2 The pl 70.4 2.5 5.5E-05 32.7 1.4 12 1-12 43-54 (192)
256 TIGR01189 ccmA heme ABC export 70.2 2.6 5.6E-05 32.7 1.5 12 1-12 36-47 (198)
257 cd03253 ABCC_ATM1_transporter 70.1 2.6 5.5E-05 33.6 1.5 12 1-12 37-48 (236)
258 TIGR01184 ntrCD nitrate transp 70.0 2.6 5.7E-05 33.6 1.5 12 1-12 21-32 (230)
259 TIGR01978 sufC FeS assembly AT 70.0 2.5 5.5E-05 33.8 1.4 12 1-12 36-47 (243)
260 cd03290 ABCC_SUR1_N The SUR do 70.0 2.6 5.6E-05 33.2 1.5 12 1-12 37-48 (218)
261 PRK04296 thymidine kinase; Pro 69.9 11 0.00023 29.2 4.9 16 1-16 12-27 (190)
262 PRK11629 lolD lipoprotein tran 69.9 2.6 5.7E-05 33.6 1.5 12 1-12 45-56 (233)
263 COG1127 Ttg2A ABC-type transpo 69.9 2.6 5.7E-05 34.2 1.4 12 1-12 44-55 (263)
264 cd03250 ABCC_MRP_domain1 Domai 69.9 2.6 5.7E-05 32.8 1.5 12 1-12 41-52 (204)
265 cd03249 ABC_MTABC3_MDL1_MDL2 M 69.9 2.6 5.7E-05 33.7 1.5 12 1-12 39-50 (238)
266 PRK10584 putative ABC transpor 69.8 2.7 5.8E-05 33.4 1.5 12 1-12 46-57 (228)
267 cd03298 ABC_ThiQ_thiamine_tran 69.8 2.6 5.7E-05 33.0 1.4 12 1-12 34-45 (211)
268 cd03238 ABC_UvrA The excision 69.7 2.6 5.6E-05 32.4 1.3 11 1-11 31-41 (176)
269 TIGR03015 pepcterm_ATPase puta 69.6 5.6 0.00012 32.2 3.4 28 53-80 106-133 (269)
270 PRK10771 thiQ thiamine transpo 69.6 2.6 5.6E-05 33.6 1.4 12 1-12 35-46 (232)
271 PRK10895 lipopolysaccharide AB 69.6 2.7 5.8E-05 33.7 1.5 12 1-12 39-50 (241)
272 PRK10247 putative ABC transpor 69.6 2.7 5.9E-05 33.4 1.5 12 1-12 43-54 (225)
273 PLN02820 3-methylcrotonyl-CoA 69.5 49 0.0011 30.5 9.6 75 119-193 465-555 (569)
274 cd03234 ABCG_White The White s 69.4 2.7 5.9E-05 33.3 1.4 12 1-12 43-54 (226)
275 cd03261 ABC_Org_Solvent_Resist 69.4 2.7 5.8E-05 33.5 1.4 12 1-12 36-47 (235)
276 PRK10908 cell division protein 69.3 2.7 5.9E-05 33.2 1.5 12 1-12 38-49 (222)
277 PRK12723 flagellar biosynthesi 69.3 6.2 0.00014 34.4 3.7 76 1-83 184-267 (388)
278 PRK12726 flagellar biosynthesi 69.3 13 0.00027 32.6 5.5 80 1-83 216-298 (407)
279 PRK13543 cytochrome c biogenes 69.3 2.7 5.9E-05 33.0 1.5 12 1-12 47-58 (214)
280 cd03254 ABCC_Glucan_exporter_l 69.2 2.7 6E-05 33.3 1.4 12 1-12 39-50 (229)
281 cd03224 ABC_TM1139_LivF_branch 69.2 2.7 5.8E-05 33.2 1.4 12 1-12 36-47 (222)
282 cd03112 CobW_like The function 69.1 6.4 0.00014 29.5 3.4 13 1-13 10-22 (158)
283 cd03223 ABCD_peroxisomal_ALDP 69.1 2.8 6.2E-05 31.6 1.4 12 1-12 37-48 (166)
284 cd03245 ABCC_bacteriocin_expor 69.0 2.8 6.1E-05 33.0 1.5 12 1-12 40-51 (220)
285 PRK11701 phnK phosphonate C-P 68.9 2.8 6.1E-05 34.0 1.5 12 1-12 42-53 (258)
286 PRK14242 phosphate transporter 68.8 2.8 6.2E-05 33.8 1.5 12 1-12 42-53 (253)
287 cd03251 ABCC_MsbA MsbA is an e 68.8 2.8 6.1E-05 33.3 1.5 12 1-12 38-49 (234)
288 cd01130 VirB11-like_ATPase Typ 68.8 2.9 6.4E-05 32.2 1.5 12 1-12 35-46 (186)
289 PRK10744 pstB phosphate transp 68.8 2.8 6.1E-05 34.1 1.5 12 1-12 49-60 (260)
290 cd03267 ABC_NatA_like Similar 68.6 2.9 6.2E-05 33.5 1.4 12 1-12 57-68 (236)
291 COG0802 Predicted ATPase or ki 68.6 3.1 6.7E-05 31.1 1.5 15 1-15 35-49 (149)
292 cd03297 ABC_ModC_molybdenum_tr 68.6 2.9 6.3E-05 32.8 1.5 12 1-12 33-44 (214)
293 cd03295 ABC_OpuCA_Osmoprotecti 68.5 2.9 6.3E-05 33.5 1.5 12 1-12 37-48 (242)
294 TIGR02324 CP_lyasePhnL phospho 68.4 2.9 6.3E-05 33.0 1.4 12 1-12 44-55 (224)
295 PF13479 AAA_24: AAA domain 68.4 7 0.00015 30.8 3.6 27 54-80 51-78 (213)
296 PRK14251 phosphate ABC transpo 68.2 3 6.4E-05 33.7 1.5 12 1-12 40-51 (251)
297 cd03252 ABCC_Hemolysin The ABC 68.2 2.9 6.4E-05 33.3 1.4 12 1-12 38-49 (237)
298 COG1116 TauB ABC-type nitrate/ 68.2 3 6.5E-05 33.8 1.5 12 1-12 39-50 (248)
299 cd03256 ABC_PhnC_transporter A 68.1 3 6.4E-05 33.3 1.4 12 1-12 37-48 (241)
300 PRK13638 cbiO cobalt transport 68.0 2.8 6E-05 34.4 1.3 12 1-12 37-48 (271)
301 PRK13539 cytochrome c biogenes 68.0 3.1 6.7E-05 32.6 1.5 12 1-12 38-49 (207)
302 PRK14241 phosphate transporter 68.0 3 6.5E-05 33.8 1.5 12 1-12 40-51 (258)
303 TIGR02237 recomb_radB DNA repa 67.9 10 0.00023 29.4 4.5 28 1-28 22-50 (209)
304 COG3638 ABC-type phosphate/pho 67.9 2.9 6.4E-05 33.8 1.3 13 1-13 40-52 (258)
305 PF03029 ATP_bind_1: Conserved 67.7 3 6.6E-05 33.7 1.4 22 1-24 6-27 (238)
306 PRK09519 recA DNA recombinatio 67.7 33 0.00072 32.8 8.3 27 58-84 126-152 (790)
307 TIGR00968 3a0106s01 sulfate AB 67.7 3.1 6.7E-05 33.3 1.5 12 1-12 36-47 (237)
308 PRK11247 ssuB aliphatic sulfon 67.7 3.1 6.7E-05 34.0 1.5 12 1-12 48-59 (257)
309 TIGR03864 PQQ_ABC_ATP ABC tran 67.6 3.1 6.8E-05 33.2 1.5 12 1-12 37-48 (236)
310 TIGR02323 CP_lyasePhnK phospho 67.5 3.1 6.7E-05 33.6 1.4 12 1-12 39-50 (253)
311 PRK11264 putative amino-acid A 67.5 3.1 6.8E-05 33.5 1.5 12 1-12 39-50 (250)
312 PRK13538 cytochrome c biogenes 67.5 3.1 6.8E-05 32.4 1.4 12 1-12 37-48 (204)
313 PRK11831 putative ABC transpor 67.4 3 6.6E-05 34.1 1.4 12 1-12 43-54 (269)
314 TIGR02770 nickel_nikD nickel i 67.4 3 6.6E-05 33.2 1.4 12 1-12 22-33 (230)
315 cd03237 ABC_RNaseL_inhibitor_d 67.4 3.1 6.8E-05 33.7 1.5 12 1-12 35-46 (246)
316 cd03221 ABCF_EF-3 ABCF_EF-3 E 67.4 3 6.5E-05 30.7 1.2 64 1-83 36-101 (144)
317 PRK09544 znuC high-affinity zi 67.4 3.1 6.8E-05 33.7 1.5 12 1-12 40-51 (251)
318 PRK11614 livF leucine/isoleuci 67.4 2.8 6.2E-05 33.4 1.2 12 1-12 41-52 (237)
319 PRK11248 tauB taurine transpor 67.4 3.1 6.8E-05 33.8 1.5 12 1-12 37-48 (255)
320 KOG0840|consensus 67.3 3.1 6.7E-05 33.8 1.3 57 119-177 174-256 (275)
321 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 66.9 3.2 6.9E-05 33.0 1.4 12 1-12 58-69 (224)
322 PRK07261 topology modulation p 66.5 3.5 7.7E-05 31.3 1.5 12 1-12 10-21 (171)
323 cd03244 ABCC_MRP_domain2 Domai 66.5 3.4 7.4E-05 32.5 1.5 12 1-12 40-51 (221)
324 PRK14274 phosphate ABC transpo 66.5 3.4 7.4E-05 33.5 1.5 12 1-12 48-59 (259)
325 PRK14240 phosphate transporter 66.5 3.3 7.2E-05 33.3 1.4 12 1-12 39-50 (250)
326 cd03213 ABCG_EPDR ABCG transpo 66.5 3.3 7.2E-05 32.1 1.4 12 1-12 45-56 (194)
327 TIGR00972 3a0107s01c2 phosphat 66.5 3.4 7.3E-05 33.3 1.5 12 1-12 37-48 (247)
328 KOG1534|consensus 66.4 3.1 6.6E-05 33.2 1.1 12 1-12 13-24 (273)
329 TIGR00235 udk uridine kinase. 66.3 3.5 7.6E-05 32.3 1.5 14 1-14 16-29 (207)
330 PRK11300 livG leucine/isoleuci 66.3 3.3 7.1E-05 33.5 1.4 12 1-12 41-52 (255)
331 PF00485 PRK: Phosphoribulokin 66.3 4.5 9.8E-05 31.3 2.1 21 1-23 9-29 (194)
332 TIGR03499 FlhF flagellar biosy 66.3 4 8.6E-05 33.9 1.9 73 1-80 204-282 (282)
333 cd00009 AAA The AAA+ (ATPases 66.3 18 0.00039 25.4 5.2 16 1-16 29-44 (151)
334 PRK14250 phosphate ABC transpo 66.2 3.4 7.4E-05 33.2 1.4 12 1-12 39-50 (241)
335 cd03248 ABCC_TAP TAP, the Tran 66.2 3.5 7.6E-05 32.6 1.5 12 1-12 50-61 (226)
336 PF13521 AAA_28: AAA domain; P 66.1 6 0.00013 29.5 2.7 23 2-30 10-32 (163)
337 PRK14245 phosphate ABC transpo 66.1 3.4 7.5E-05 33.3 1.5 12 1-12 39-50 (250)
338 PRK14244 phosphate ABC transpo 66.1 3.5 7.6E-05 33.3 1.5 12 1-12 41-52 (251)
339 PRK14255 phosphate ABC transpo 66.1 3.4 7.4E-05 33.3 1.4 12 1-12 41-52 (252)
340 cd01122 GP4d_helicase GP4d_hel 66.0 13 0.00028 30.2 4.9 18 1-18 40-57 (271)
341 COG1136 SalX ABC-type antimicr 66.0 3.6 7.7E-05 33.0 1.5 13 1-13 41-53 (226)
342 PRK15056 manganese/iron transp 66.0 3.4 7.3E-05 33.9 1.4 12 1-12 43-54 (272)
343 PRK14256 phosphate ABC transpo 66.0 3.5 7.6E-05 33.3 1.5 12 1-12 40-51 (252)
344 TIGR02769 nickel_nikE nickel i 65.9 3.4 7.4E-05 33.7 1.4 12 1-12 47-58 (265)
345 PRK13645 cbiO cobalt transport 65.7 3.5 7.5E-05 34.2 1.4 12 1-12 47-58 (289)
346 TIGR03411 urea_trans_UrtD urea 65.7 3.5 7.6E-05 33.0 1.4 13 1-13 38-50 (242)
347 cd03369 ABCC_NFT1 Domain 2 of 65.7 3.6 7.9E-05 32.1 1.5 12 1-12 44-55 (207)
348 PRK14247 phosphate ABC transpo 65.5 3.6 7.7E-05 33.2 1.4 12 1-12 39-50 (250)
349 PRK14259 phosphate ABC transpo 65.4 3.6 7.8E-05 33.7 1.4 12 1-12 49-60 (269)
350 PRK11124 artP arginine transpo 65.3 3.7 8E-05 32.9 1.5 12 1-12 38-49 (242)
351 PRK14248 phosphate ABC transpo 65.2 3.7 8E-05 33.5 1.5 13 1-13 57-69 (268)
352 PRK09493 glnQ glutamine ABC tr 65.2 3.7 8E-05 32.9 1.4 12 1-12 37-48 (240)
353 cd02023 UMPK Uridine monophosp 65.0 3.9 8.5E-05 31.6 1.5 15 1-15 9-23 (198)
354 PRK09984 phosphonate/organopho 65.0 3.6 7.9E-05 33.4 1.4 12 1-12 40-51 (262)
355 TIGR03005 ectoine_ehuA ectoine 65.0 3.7 7.9E-05 33.2 1.4 12 1-12 36-47 (252)
356 PRK13649 cbiO cobalt transport 65.0 3.6 7.8E-05 33.9 1.4 12 1-12 43-54 (280)
357 PRK14269 phosphate ABC transpo 65.0 3.8 8.2E-05 33.0 1.5 12 1-12 38-49 (246)
358 CHL00131 ycf16 sulfate ABC tra 64.9 3.4 7.3E-05 33.3 1.2 12 1-12 43-54 (252)
359 cd03231 ABC_CcmA_heme_exporter 64.8 3.9 8.4E-05 31.8 1.5 12 1-12 36-47 (201)
360 PRK14267 phosphate ABC transpo 64.7 3.8 8.2E-05 33.1 1.4 12 1-12 40-51 (253)
361 PRK14235 phosphate transporter 64.7 3.9 8.4E-05 33.5 1.5 12 1-12 55-66 (267)
362 PRK13541 cytochrome c biogenes 64.7 3.9 8.5E-05 31.6 1.5 12 1-12 36-47 (195)
363 cd02019 NK Nucleoside/nucleoti 64.6 4.5 9.8E-05 25.6 1.5 15 1-15 9-23 (69)
364 cd03294 ABC_Pro_Gly_Bertaine T 64.6 3.8 8.3E-05 33.5 1.5 12 1-12 60-71 (269)
365 cd01121 Sms Sms (bacterial rad 64.5 14 0.00031 31.9 5.0 78 1-86 92-174 (372)
366 PRK14260 phosphate ABC transpo 64.4 3.9 8.5E-05 33.2 1.5 13 1-13 43-55 (259)
367 PRK14262 phosphate ABC transpo 64.3 3.9 8.4E-05 32.9 1.4 12 1-12 39-50 (250)
368 PRK14249 phosphate ABC transpo 64.3 3.9 8.5E-05 33.0 1.5 12 1-12 40-51 (251)
369 PRK13547 hmuV hemin importer A 64.3 3.8 8.2E-05 33.7 1.4 12 1-12 37-48 (272)
370 PRK08233 hypothetical protein; 64.2 4.2 9E-05 30.7 1.5 14 1-14 13-26 (182)
371 PRK14253 phosphate ABC transpo 64.1 4 8.7E-05 32.8 1.5 13 1-13 39-51 (249)
372 cd03233 ABC_PDR_domain1 The pl 64.0 3.5 7.6E-05 32.2 1.1 12 1-12 43-54 (202)
373 PRK13548 hmuV hemin importer A 64.0 3.9 8.5E-05 33.2 1.4 12 1-12 38-49 (258)
374 PRK13640 cbiO cobalt transport 64.0 3.9 8.5E-05 33.8 1.4 12 1-12 43-54 (282)
375 TIGR03771 anch_rpt_ABC anchore 64.0 4 8.7E-05 32.4 1.4 12 1-12 16-27 (223)
376 PRK14272 phosphate ABC transpo 63.9 4 8.7E-05 32.9 1.5 13 1-13 40-52 (252)
377 PRK13644 cbiO cobalt transport 63.8 4 8.7E-05 33.5 1.5 12 1-12 38-49 (274)
378 TIGR02239 recomb_RAD51 DNA rep 63.8 21 0.00046 30.1 5.8 18 1-18 106-123 (316)
379 PRK14974 cell division protein 63.8 19 0.00042 30.7 5.6 80 1-83 150-235 (336)
380 PRK08118 topology modulation p 63.8 4.3 9.3E-05 30.8 1.5 14 1-14 11-24 (167)
381 PRK15112 antimicrobial peptide 63.7 4.1 8.8E-05 33.3 1.5 12 1-12 49-60 (267)
382 PRK14238 phosphate transporter 63.7 4.1 8.9E-05 33.4 1.5 12 1-12 60-71 (271)
383 PRK13639 cbiO cobalt transport 63.6 4 8.6E-05 33.6 1.4 12 1-12 38-49 (275)
384 PRK14239 phosphate transporter 63.6 4.1 8.8E-05 32.8 1.4 12 1-12 41-52 (252)
385 PRK14268 phosphate ABC transpo 63.4 4.1 9E-05 33.0 1.4 12 1-12 48-59 (258)
386 PRK14273 phosphate ABC transpo 63.3 4.2 9.1E-05 32.9 1.5 12 1-12 43-54 (254)
387 cd03274 ABC_SMC4_euk Eukaryoti 63.2 5 0.00011 31.7 1.9 12 1-12 35-46 (212)
388 PRK14265 phosphate ABC transpo 63.2 4.2 9.1E-05 33.4 1.5 12 1-12 56-67 (274)
389 PRK09580 sufC cysteine desulfu 63.1 3.8 8.2E-05 32.9 1.2 12 1-12 37-48 (248)
390 cd03217 ABC_FeS_Assembly ABC-t 63.1 4.2 9.1E-05 31.6 1.4 12 1-12 36-47 (200)
391 PRK13646 cbiO cobalt transport 63.1 4.2 9.1E-05 33.7 1.5 12 1-12 43-54 (286)
392 TIGR02982 heterocyst_DevA ABC 63.1 4.3 9.4E-05 32.0 1.5 12 1-12 41-52 (220)
393 PRK13641 cbiO cobalt transport 63.0 4.2 9.2E-05 33.6 1.5 13 1-13 43-55 (287)
394 PF01926 MMR_HSR1: 50S ribosom 63.0 4.6 0.0001 28.1 1.5 11 2-12 10-20 (116)
395 TIGR01188 drrA daunorubicin re 63.0 4.2 9.2E-05 33.9 1.5 12 1-12 29-40 (302)
396 PRK14261 phosphate ABC transpo 63.0 4.2 9.2E-05 32.8 1.4 12 1-12 42-53 (253)
397 COG1125 OpuBA ABC-type proline 63.0 4.1 9E-05 33.5 1.3 12 1-12 37-48 (309)
398 PRK13632 cbiO cobalt transport 62.9 4.2 9.2E-05 33.3 1.4 12 1-12 45-56 (271)
399 KOG0062|consensus 62.9 4.3 9.3E-05 36.5 1.5 21 1-25 116-137 (582)
400 COG1131 CcmA ABC-type multidru 62.8 4.3 9.4E-05 33.8 1.5 12 1-12 41-52 (293)
401 PRK14237 phosphate transporter 62.8 4.4 9.5E-05 33.1 1.5 12 1-12 56-67 (267)
402 PRK11231 fecE iron-dicitrate t 62.8 4.3 9.2E-05 32.9 1.4 12 1-12 38-49 (255)
403 TIGR01288 nodI ATP-binding ABC 62.6 4.3 9.4E-05 33.9 1.5 12 1-12 40-51 (303)
404 PRK13648 cbiO cobalt transport 62.5 4.4 9.5E-05 33.1 1.5 12 1-12 45-56 (269)
405 PRK10575 iron-hydroxamate tran 62.4 4 8.6E-05 33.3 1.2 12 1-12 47-58 (265)
406 PRK14270 phosphate ABC transpo 62.4 4.5 9.8E-05 32.6 1.5 12 1-12 40-51 (251)
407 TIGR03265 PhnT2 putative 2-ami 62.3 4.4 9.6E-05 34.8 1.5 12 1-12 40-51 (353)
408 cd03279 ABC_sbcCD SbcCD and ot 62.2 4.2 9.1E-05 32.0 1.2 12 1-12 38-49 (213)
409 COG0616 SppA Periplasmic serin 62.2 5.8 0.00012 33.6 2.1 37 152-188 236-272 (317)
410 TIGR01187 potA spermidine/putr 62.1 4.5 9.7E-05 34.2 1.5 12 1-12 6-17 (325)
411 PRK14722 flhF flagellar biosyn 62.1 5 0.00011 34.7 1.8 37 1-37 147-186 (374)
412 PRK10418 nikD nickel transport 62.0 4.5 9.8E-05 32.7 1.4 13 1-13 39-51 (254)
413 TIGR03740 galliderm_ABC gallid 61.9 4.7 0.0001 31.9 1.5 12 1-12 36-47 (223)
414 KOG0099|consensus 61.9 6.5 0.00014 32.4 2.3 45 2-46 51-125 (379)
415 PRK14961 DNA polymerase III su 61.9 9.8 0.00021 32.7 3.5 16 1-16 48-63 (363)
416 cd01131 PilT Pilus retraction 61.9 4.8 0.0001 31.4 1.5 11 1-11 11-21 (198)
417 TIGR03873 F420-0_ABC_ATP propo 61.9 4.3 9.3E-05 32.9 1.3 12 1-12 37-48 (256)
418 cd00820 PEPCK_HprK Phosphoenol 61.8 4.8 0.0001 28.3 1.3 12 1-12 25-36 (107)
419 PRK10253 iron-enterobactin tra 61.8 4.2 9.1E-05 33.2 1.2 12 1-12 43-54 (265)
420 PRK11650 ugpC glycerol-3-phosp 61.8 4.5 9.8E-05 34.7 1.5 12 1-12 40-51 (356)
421 PRK09452 potA putrescine/sperm 61.8 4.5 9.8E-05 35.0 1.4 12 1-12 50-61 (375)
422 PF00448 SRP54: SRP54-type pro 61.8 7.1 0.00015 30.5 2.4 79 1-82 11-95 (196)
423 PRK13637 cbiO cobalt transport 61.6 4.6 0.0001 33.5 1.4 12 1-12 43-54 (287)
424 PRK05480 uridine/cytidine kina 61.5 4.9 0.00011 31.4 1.5 15 1-15 16-30 (209)
425 PRK13650 cbiO cobalt transport 61.5 4.7 0.0001 33.2 1.5 12 1-12 43-54 (279)
426 PRK11000 maltose/maltodextrin 61.5 4.6 0.0001 34.9 1.4 12 1-12 39-50 (369)
427 PRK15093 antimicrobial peptide 61.3 4.8 0.0001 34.2 1.5 13 1-13 43-55 (330)
428 PLN03186 DNA repair protein RA 61.3 18 0.00038 31.0 4.9 18 1-18 133-150 (342)
429 PRK11153 metN DL-methionine tr 61.3 4.7 0.0001 34.4 1.4 12 1-12 41-52 (343)
430 PRK13643 cbiO cobalt transport 61.2 4.6 0.0001 33.5 1.4 12 1-12 42-53 (288)
431 cd00066 G-alpha G protein alph 61.2 5.1 0.00011 33.8 1.6 13 2-14 11-23 (317)
432 PRK10619 histidine/lysine/argi 61.2 4.8 0.0001 32.6 1.5 12 1-12 41-52 (257)
433 PRK14271 phosphate ABC transpo 61.2 4.8 0.0001 33.1 1.5 12 1-12 57-68 (276)
434 PRK13546 teichoic acids export 61.2 4.7 0.0001 33.0 1.4 12 1-12 60-71 (264)
435 PRK10419 nikE nickel transport 61.1 4.7 0.0001 33.0 1.4 12 1-12 48-59 (268)
436 PRK09270 nucleoside triphospha 61.1 6 0.00013 31.5 2.0 15 1-15 43-57 (229)
437 cd03300 ABC_PotA_N PotA is an 61.1 4.9 0.00011 32.0 1.5 12 1-12 36-47 (232)
438 PRK14258 phosphate ABC transpo 61.0 4.9 0.00011 32.7 1.5 12 1-12 43-54 (261)
439 PRK10851 sulfate/thiosulfate t 60.7 4.9 0.00011 34.5 1.5 12 1-12 38-49 (353)
440 COG1118 CysA ABC-type sulfate/ 60.7 4.9 0.00011 33.8 1.4 12 1-12 38-49 (345)
441 PRK13652 cbiO cobalt transport 60.6 5 0.00011 33.0 1.5 12 1-12 40-51 (277)
442 PRK03695 vitamin B12-transport 60.5 4.4 9.6E-05 32.7 1.1 12 1-12 32-43 (248)
443 PRK11545 gntK gluconate kinase 60.5 5.3 0.00012 30.1 1.5 15 1-15 5-19 (163)
444 PRK14252 phosphate ABC transpo 60.3 5.1 0.00011 32.6 1.5 12 1-12 52-63 (265)
445 PRK14243 phosphate transporter 60.3 5.2 0.00011 32.6 1.5 12 1-12 46-57 (264)
446 PRK14266 phosphate ABC transpo 60.1 5.2 0.00011 32.2 1.5 12 1-12 39-50 (250)
447 PRK13634 cbiO cobalt transport 60.0 5.1 0.00011 33.3 1.4 12 1-12 43-54 (290)
448 TIGR02142 modC_ABC molybdenum 60.0 5.1 0.00011 34.3 1.5 12 1-12 33-44 (354)
449 PF08423 Rad51: Rad51; InterP 60.0 4.7 0.0001 32.9 1.2 114 1-118 48-183 (256)
450 PRK14275 phosphate ABC transpo 60.0 5.1 0.00011 33.2 1.4 12 1-12 75-86 (286)
451 cd03272 ABC_SMC3_euk Eukaryoti 59.9 5.4 0.00012 31.9 1.5 14 1-14 33-46 (243)
452 cd03240 ABC_Rad50 The catalyti 59.8 6.3 0.00014 30.9 1.9 15 1-15 32-46 (204)
453 PRK11432 fbpC ferric transport 59.7 5.2 0.00011 34.3 1.5 12 1-12 42-53 (351)
454 PRK14721 flhF flagellar biosyn 59.5 7.6 0.00016 34.2 2.4 37 1-37 201-240 (420)
455 TIGR01618 phage_P_loop phage n 59.3 25 0.00054 28.1 5.2 11 1-11 22-32 (220)
456 PRK11144 modC molybdate transp 59.3 5.3 0.00011 34.2 1.4 12 1-12 34-45 (352)
457 PRK13642 cbiO cobalt transport 59.2 5.4 0.00012 32.8 1.4 12 1-12 43-54 (277)
458 cd00880 Era_like Era (E. coli 59.2 5.7 0.00012 28.4 1.4 13 1-13 6-18 (163)
459 PRK09087 hypothetical protein; 59.2 13 0.00027 29.8 3.5 68 1-79 54-125 (226)
460 cd03278 ABC_SMC_barmotin Barmo 58.9 7 0.00015 30.5 2.0 14 1-14 32-45 (197)
461 PRK13651 cobalt transporter AT 58.6 5.6 0.00012 33.4 1.4 12 1-12 43-54 (305)
462 PRK14956 DNA polymerase III su 58.6 16 0.00034 32.9 4.2 17 1-17 50-66 (484)
463 PRK11607 potG putrescine trans 58.5 5.6 0.00012 34.5 1.5 12 1-12 55-66 (377)
464 TIGR01360 aden_kin_iso1 adenyl 58.4 6.1 0.00013 30.0 1.5 13 1-13 13-25 (188)
465 PRK14246 phosphate ABC transpo 58.4 5.6 0.00012 32.3 1.4 12 1-12 46-57 (257)
466 COG4778 PhnL ABC-type phosphon 58.4 5.8 0.00013 30.7 1.3 20 1-28 47-66 (235)
467 PRK09825 idnK D-gluconate kina 58.2 6.2 0.00013 30.2 1.5 14 1-14 13-26 (176)
468 PRK13633 cobalt transporter AT 58.1 5.7 0.00012 32.7 1.4 12 1-12 46-57 (280)
469 PRK13636 cbiO cobalt transport 58.1 5.8 0.00013 32.8 1.5 13 1-13 42-54 (283)
470 PF13476 AAA_23: AAA domain; P 58.1 8.3 0.00018 29.3 2.3 16 1-16 29-44 (202)
471 PRK13647 cbiO cobalt transport 57.9 5.8 0.00013 32.6 1.4 12 1-12 41-52 (274)
472 TIGR03258 PhnT 2-aminoethylpho 57.8 5.9 0.00013 34.2 1.5 12 1-12 41-52 (362)
473 PTZ00301 uridine kinase; Provi 57.8 6.2 0.00013 31.2 1.5 14 1-14 13-26 (210)
474 PRK09536 btuD corrinoid ABC tr 57.7 5.6 0.00012 34.8 1.3 12 1-12 39-50 (402)
475 TIGR02314 ABC_MetN D-methionin 57.6 5.9 0.00013 33.9 1.5 12 1-12 41-52 (343)
476 PRK10078 ribose 1,5-bisphospho 57.6 6.2 0.00014 30.3 1.5 11 1-11 12-22 (186)
477 PRK14254 phosphate ABC transpo 57.6 6 0.00013 32.7 1.5 12 1-12 75-86 (285)
478 PRK05416 glmZ(sRNA)-inactivati 57.6 12 0.00026 31.2 3.3 72 1-79 16-95 (288)
479 PRK06995 flhF flagellar biosyn 57.6 7.6 0.00016 34.9 2.2 37 1-37 266-305 (484)
480 PRK14263 phosphate ABC transpo 57.5 6.1 0.00013 32.2 1.5 12 1-12 44-55 (261)
481 PRK13635 cbiO cobalt transport 57.4 6 0.00013 32.6 1.4 12 1-12 43-54 (279)
482 PF00503 G-alpha: G-protein al 57.2 7.3 0.00016 33.8 2.0 13 2-14 69-81 (389)
483 PF00437 T2SE: Type II/IV secr 57.2 6.5 0.00014 32.1 1.6 12 1-12 137-148 (270)
484 COG4559 ABC-type hemin transpo 57.2 6 0.00013 31.7 1.3 11 1-11 37-47 (259)
485 cd03291 ABCC_CFTR1 The CFTR su 57.1 6.2 0.00013 32.7 1.5 12 1-12 73-84 (282)
486 PRK14264 phosphate ABC transpo 57.0 6.2 0.00014 33.0 1.5 12 1-12 81-92 (305)
487 PRK15079 oligopeptide ABC tran 56.9 6.2 0.00014 33.5 1.5 12 1-12 57-68 (331)
488 PRK06217 hypothetical protein; 56.9 6.6 0.00014 30.0 1.5 14 1-14 11-24 (183)
489 COG1122 CbiO ABC-type cobalt t 56.8 5.9 0.00013 32.0 1.3 12 1-12 40-51 (235)
490 TIGR03238 dnd_assoc_3 dnd syst 56.8 29 0.00062 31.3 5.5 9 1-9 42-50 (504)
491 PRK13536 nodulation factor exp 56.7 6.4 0.00014 33.6 1.5 12 1-12 77-88 (340)
492 PRK14236 phosphate transporter 56.6 6.4 0.00014 32.2 1.5 12 1-12 61-72 (272)
493 cd03288 ABCC_SUR2 The SUR doma 56.5 6.5 0.00014 31.9 1.5 12 1-12 57-68 (257)
494 PRK11022 dppD dipeptide transp 56.5 6.2 0.00013 33.4 1.4 13 1-13 43-55 (326)
495 PRK13537 nodulation ABC transp 56.5 6.5 0.00014 33.0 1.5 12 1-12 43-54 (306)
496 cd01876 YihA_EngB The YihA (En 56.0 6.8 0.00015 28.5 1.4 13 1-13 9-21 (170)
497 COG4639 Predicted kinase [Gene 56.0 6.1 0.00013 29.9 1.1 10 1-10 12-21 (168)
498 TIGR02322 phosphon_PhnN phosph 55.8 7.1 0.00015 29.5 1.5 14 1-14 11-24 (179)
499 PRK13631 cbiO cobalt transport 55.5 6.8 0.00015 33.1 1.5 12 1-12 62-73 (320)
500 COG4133 CcmA ABC-type transpor 55.5 7.2 0.00016 30.5 1.5 12 1-12 38-49 (209)
No 1
>KOG1680|consensus
Probab=100.00 E-value=1.7e-36 Score=239.96 Aligned_cols=181 Identities=20% Similarity=0.156 Sum_probs=159.3
Q ss_pred cccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh------hhhHHHHhHHH
Q psy7339 33 LADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE------RLDHYARTTEQ 105 (223)
Q Consensus 33 ~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~------~~~~~~~~~~~ 105 (223)
.-.+| ...+|+|+.+|+.+..++.||.+++..+++|+.+.++|++|.|++||+|.|+..... ....+.+.+..
T Consensus 43 ~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~ 122 (290)
T KOG1680|consen 43 EDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDL 122 (290)
T ss_pred cCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccchhhh
Confidence 34567 889999999999999999999999999999999999999999999999999865332 11223333332
Q ss_pred Hhhhhhcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCCCC
Q psy7339 106 VKNRVLLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLN 162 (223)
Q Consensus 106 ~~~~~~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~ 162 (223)
+. ..++|+|+ ++++|++|+.++|++|.+|++++|+|.||.++|+++++||++++
T Consensus 123 ~~---~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s~Ale~~ltg~~~~ 199 (290)
T KOG1680|consen 123 VS---RLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKSRALEMILTGRRLG 199 (290)
T ss_pred hh---hcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChHHHHHHHHhcCccc
Confidence 22 36788876 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcCcC
Q psy7339 163 AQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGHA 216 (223)
Q Consensus 163 a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~ 216 (223)
|+||+++||||+|+|.++++.+|.+|+++|++.||.+++..|+.++..+...+.
T Consensus 200 AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~~~K~svn~~~e~~l~ 253 (290)
T KOG1680|consen 200 AQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVVRADKESVNAAYETTLF 253 (290)
T ss_pred HHHHHhCCceeEeecchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccHH
Confidence 999999999999999999999999999999999999999999999987665543
No 2
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=1.4e-35 Score=244.10 Aligned_cols=187 Identities=12% Similarity=0.118 Sum_probs=161.3
Q ss_pred ceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcch-----h---hhhHH
Q psy7339 29 AEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPG-----E---RLDHY 99 (223)
Q Consensus 29 ~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~-----~---~~~~~ 99 (223)
..+..-|+| ...+++++..|..+..|+.||.++++.++.|+++++||++|.|++||+|.|+.... . ..+.+
T Consensus 10 i~~~~~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 89 (275)
T PRK09120 10 VKVEVEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERI 89 (275)
T ss_pred EEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHH
Confidence 556677889 77899999999999999999999999999999999999999999999998875421 0 01112
Q ss_pred HHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHH
Q psy7339 100 ARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELL 155 (223)
Q Consensus 100 ~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ 155 (223)
......+...+ .+|+|+|+ ++++|++||+++|++|++|++++|++++|+.+|++++
T Consensus 90 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ll 169 (275)
T PRK09120 90 RREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDALYYI 169 (275)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHHHHHH
Confidence 22222333333 49999997 7999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcCc
Q psy7339 156 YTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGH 215 (223)
Q Consensus 156 l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~ 215 (223)
++|++++|+||+++||||+|+|++++++++.+++++|+..||.+++.+|+.++......+
T Consensus 170 ltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~ 229 (275)
T PRK09120 170 MTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKNPVVLRAAKDGFKRVRELTW 229 (275)
T ss_pred hcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCH
Confidence 999999999999999999999999999999999999999999999999999987654433
No 3
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.4e-35 Score=241.34 Aligned_cols=187 Identities=19% Similarity=0.203 Sum_probs=160.7
Q ss_pred cceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC-CCcCCCCCCCcchh--------hhh
Q psy7339 28 LAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC-RAGIEPPPSCLPGE--------RLD 97 (223)
Q Consensus 28 ~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g-~~F~aG~~~~~~~~--------~~~ 97 (223)
...++.-++| +..+++|+..|..+..|+.||.++++.++.|+++++||++|.| ++||+|.|+..... ...
T Consensus 4 ~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK05980 4 TVLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALR 83 (260)
T ss_pred eEEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHH
Confidence 3455667788 6788999999999999999999999999999999999999999 79999988753211 122
Q ss_pred HHHHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHH
Q psy7339 98 HYARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASE 153 (223)
Q Consensus 98 ~~~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~ 153 (223)
.+......+...+ .+|+|+|+ ++++|++||+++|++|++|++++|++++|..+|++
T Consensus 84 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~ 163 (260)
T PRK05980 84 DFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALE 163 (260)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHHHH
Confidence 2332223333333 49999997 79999999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcC
Q psy7339 154 LLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDG 214 (223)
Q Consensus 154 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~ 214 (223)
++++|++++|+||+++||||+|+|++++++++.+++++++..||.+++.+|+.++......
T Consensus 164 l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~~~~~~~~~ 224 (260)
T PRK05980 164 LLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHSPVAVAAILTAVTRGLNLS 224 (260)
T ss_pred HHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999998764443
No 4
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=3.9e-35 Score=240.31 Aligned_cols=192 Identities=17% Similarity=0.125 Sum_probs=163.0
Q ss_pred cccCCcceecc-ccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhhhh-HH
Q psy7339 23 YVPASLAEFRL-ADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLD-HY 99 (223)
Q Consensus 23 ~vpa~~~~~~~-~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~~~-~~ 99 (223)
|++.+...++. -++| +..+++++..|..+..|+.||.++++.++.|+++++||++|.|++||+|.|+....+... ..
T Consensus 5 ~~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~ 84 (265)
T PLN02888 5 TVSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDV 84 (265)
T ss_pred cCCCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchh
Confidence 55566777774 5778 778899999999999999999999999999999999999999999999998864221100 11
Q ss_pred HHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHH
Q psy7339 100 ARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELL 155 (223)
Q Consensus 100 ~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ 155 (223)
......+...+ .+|+|+|+ ++++|++||+++|++|++|+++++++++|+.+|++++
T Consensus 85 ~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ 164 (265)
T PLN02888 85 KDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGANRAREVS 164 (265)
T ss_pred hHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHHHHHHHH
Confidence 11112222223 48999997 7999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcC
Q psy7339 156 YTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDG 214 (223)
Q Consensus 156 l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~ 214 (223)
++|++++|+||+++||||+|||++++.+++.+++++|+..+|.+++.+|+.++......
T Consensus 165 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~ 223 (265)
T PLN02888 165 LTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVLRYKSVINDGLKLD 223 (265)
T ss_pred HhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999998764443
No 5
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=3.6e-35 Score=239.54 Aligned_cols=185 Identities=17% Similarity=0.145 Sum_probs=159.2
Q ss_pred eeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh--hhhHHHHhHHHH
Q psy7339 30 EFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE--RLDHYARTTEQV 106 (223)
Q Consensus 30 ~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~--~~~~~~~~~~~~ 106 (223)
.++..++| ...+++++..|..+..|+.||.++++.+++|+++++||++|.|+.||+|.|+..... ..+.+......+
T Consensus 5 ~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~ 84 (255)
T PRK09674 5 LVSRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQL 84 (255)
T ss_pred EEEeECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHH
Confidence 45566788 678889999999999999999999999999999999999999999999988764211 111122222233
Q ss_pred hhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCCCC
Q psy7339 107 KNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLN 162 (223)
Q Consensus 107 ~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~ 162 (223)
...+ .+|+|+|+ ++++|++||+++|++|++|++++|++++|+.+|++++++|++++
T Consensus 85 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~l~g~~~~ 164 (255)
T PRK09674 85 WQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQMVLTGESIT 164 (255)
T ss_pred HHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCCccC
Confidence 3333 49999997 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcC
Q psy7339 163 AQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDG 214 (223)
Q Consensus 163 a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~ 214 (223)
|+||+++||||+|+|++++.+++.+++++|+..||.+++.+|+.+++.....
T Consensus 165 a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~ 216 (255)
T PRK09674 165 AQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALRAAKQALRQSQEVD 216 (255)
T ss_pred HHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999999998764443
No 6
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4e-35 Score=241.42 Aligned_cols=188 Identities=19% Similarity=0.138 Sum_probs=161.4
Q ss_pred Ccceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh-----------
Q psy7339 27 SLAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE----------- 94 (223)
Q Consensus 27 ~~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~----------- 94 (223)
+...++.-++| ...+++|+..|..+..|+.+|.++++.++.++++++||++|.|+.||+|.|+.....
T Consensus 6 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 85 (272)
T PRK06142 6 ESFTVELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLA 85 (272)
T ss_pred ceEEEEecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccc
Confidence 45677777889 678899999999999999999999999999999999999999999999988754211
Q ss_pred -hhhHH---HHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhc
Q psy7339 95 -RLDHY---ARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIF 146 (223)
Q Consensus 95 -~~~~~---~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~v 146 (223)
....+ ...+..+...+ .+|+|+|+ ++++|++||+++|++|++|+++++++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~ 165 (272)
T PRK06142 86 RPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPRII 165 (272)
T ss_pred cchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHHHh
Confidence 01112 12223333333 39999997 7999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHcCccccccCC-hhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcC
Q psy7339 147 GNSVASELLYTGRKLNAQEALQYGFVSGVFTT-EEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDG 214 (223)
Q Consensus 147 g~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~ 214 (223)
|+.+|++++++|++++|+||+++||||+|+|+ +++++++.+++++|+..||.+++.+|+.+++.....
T Consensus 166 G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~ 234 (272)
T PRK06142 166 GDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVRGTKEVLDYMRDHR 234 (272)
T ss_pred CHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999996 889999999999999999999999999998764443
No 7
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.1e-35 Score=239.13 Aligned_cols=189 Identities=14% Similarity=0.058 Sum_probs=161.5
Q ss_pred Ccceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhhh-h-HHHHhH
Q psy7339 27 SLAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERL-D-HYARTT 103 (223)
Q Consensus 27 ~~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~~-~-~~~~~~ 103 (223)
+...+..-|+| ...+++++..|..+..|+.||.++++.++.|+++++||++|.|+.||+|.|+....... + ......
T Consensus 4 ~~v~~~~~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 83 (258)
T PRK06190 4 PILLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDAL 83 (258)
T ss_pred ceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHH
Confidence 34566777888 77888889999999999999999999999999999999999999999998876422110 0 001112
Q ss_pred HHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCC
Q psy7339 104 EQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGR 159 (223)
Q Consensus 104 ~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~ 159 (223)
..+...+ .+|+|+|+ ++++|++||+++|++|++|+++++++++|+.+|++++++|+
T Consensus 84 ~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~ltg~ 163 (258)
T PRK06190 84 PNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGD 163 (258)
T ss_pred HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCC
Confidence 2233333 39999997 79999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcCc
Q psy7339 160 KLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGH 215 (223)
Q Consensus 160 ~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~ 215 (223)
+++|+||+++||||+++|++++++++.+++++|+..||.+++.+|+.++......+
T Consensus 164 ~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l 219 (258)
T PRK06190 164 FLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVRALKASYDDGAAAQT 219 (258)
T ss_pred ccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCH
Confidence 99999999999999999999999999999999999999999999999987654444
No 8
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.6e-35 Score=237.95 Aligned_cols=188 Identities=17% Similarity=0.173 Sum_probs=160.1
Q ss_pred Ccceec-cccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC-CCcCCCCCCCcchh----hhhHH
Q psy7339 27 SLAEFR-LADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC-RAGIEPPPSCLPGE----RLDHY 99 (223)
Q Consensus 27 ~~~~~~-~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g-~~F~aG~~~~~~~~----~~~~~ 99 (223)
..+.++ .-++| +..+++|+..|..+..|+.||.++++.++.|+++++||++|.| ++||+|.|+..... ....+
T Consensus 6 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~ 85 (256)
T PRK06143 6 AHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAF 85 (256)
T ss_pred ccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHH
Confidence 456665 34678 7889999999999999999999999999999999999999999 79999988764211 11223
Q ss_pred HHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHH
Q psy7339 100 ARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELL 155 (223)
Q Consensus 100 ~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ 155 (223)
...+..+...+ .+|+|+|+ ++++|++||+++|+ |++++++++++++|+.+|++++
T Consensus 86 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~a~~l~ 164 (256)
T PRK06143 86 ISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWARTRWLL 164 (256)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHHHHHHH
Confidence 33333333334 49999997 79999999999998 7788889999999999999999
Q ss_pred HcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcCc
Q psy7339 156 YTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGH 215 (223)
Q Consensus 156 l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~ 215 (223)
++|++++|+||+++||||+|+|++++++++.+++++++..||.+++.+|+.++......+
T Consensus 165 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l 224 (256)
T PRK06143 165 LTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALRQQKRLLREWEDMPL 224 (256)
T ss_pred HcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCH
Confidence 999999999999999999999999999999999999999999999999999988654433
No 9
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=6e-35 Score=237.63 Aligned_cols=179 Identities=15% Similarity=0.165 Sum_probs=155.6
Q ss_pred cce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCC-CCCcCCCCCCCcch----hhhhHHHHhHHHHhh
Q psy7339 35 DHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDEL-CRAGIEPPPSCLPG----ERLDHYARTTEQVKN 108 (223)
Q Consensus 35 d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~-g~~F~aG~~~~~~~----~~~~~~~~~~~~~~~ 108 (223)
++| ...+++++..|..+..|+.||.++++.+++|+++++||++|. |+.||+|.|+.... .....+......+..
T Consensus 3 ~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 82 (251)
T PLN02600 3 SGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFS 82 (251)
T ss_pred CcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHH
Confidence 567 668899999999999999999999999999999999999998 58999998886421 112223333333333
Q ss_pred hh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCCCCHH
Q psy7339 109 RV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQ 164 (223)
Q Consensus 109 ~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~ 164 (223)
.+ .+|+|+|+ ++++|++||+++|++|++|++++|++++|+.+|++++++|++++++
T Consensus 83 ~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~ 162 (251)
T PLN02600 83 SLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAR 162 (251)
T ss_pred HHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCCccCHH
Confidence 33 49999997 7899999999999999999999999999999999999999999999
Q ss_pred HHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhc
Q psy7339 165 EALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRD 213 (223)
Q Consensus 165 eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~ 213 (223)
||+++||||+++|++++++++.+++++|+..||.+++.+|+.++.....
T Consensus 163 eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~ 211 (251)
T PLN02600 163 EAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIKMAKKAINEGSEV 211 (251)
T ss_pred HHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999999876443
No 10
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.1e-35 Score=238.93 Aligned_cols=187 Identities=17% Similarity=0.135 Sum_probs=159.8
Q ss_pred cceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh--hhhHHHHhHH
Q psy7339 28 LAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE--RLDHYARTTE 104 (223)
Q Consensus 28 ~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~--~~~~~~~~~~ 104 (223)
...+..-++| +..+++++..|..+..|+.||.++++.++.|+++++||++|.|+.||+|.|+..... ..+.+...+.
T Consensus 5 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (257)
T PRK05862 5 TILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYI 84 (257)
T ss_pred eEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHH
Confidence 3455666788 678899998999999999999999999999999999999999999999988764211 1111211111
Q ss_pred HHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCC
Q psy7339 105 QVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRK 160 (223)
Q Consensus 105 ~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~ 160 (223)
.+...+ .+|+|+|+ ++++|++||+++|++|++|++++|++++|+.+|++++++|++
T Consensus 85 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~ 164 (257)
T PRK05862 85 TNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRM 164 (257)
T ss_pred HHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHHHHHHhCCc
Confidence 222233 49999997 799999999999999999999999999999999999999999
Q ss_pred CCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcC
Q psy7339 161 LNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDG 214 (223)
Q Consensus 161 ~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~ 214 (223)
++|+||+++||||+|+|++++++++.+++++++..||.+++.+|+.++......
T Consensus 165 ~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~ 218 (257)
T PRK05862 165 MDAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAVMMAKEAVNRAYETT 218 (257)
T ss_pred cCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999998765443
No 11
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.6e-35 Score=239.64 Aligned_cols=190 Identities=15% Similarity=0.148 Sum_probs=165.0
Q ss_pred ccCCcceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC-CCcCCCCCCCcch------hh
Q psy7339 24 VPASLAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC-RAGIEPPPSCLPG------ER 95 (223)
Q Consensus 24 vpa~~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g-~~F~aG~~~~~~~------~~ 95 (223)
-|.+...++.-++| ...+++++..|..+..|+.||.++++.+++|+++++||++|.| +.||+|.|+.... ..
T Consensus 8 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~ 87 (269)
T PRK06127 8 SPTGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEA 87 (269)
T ss_pred CCCCceEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHH
Confidence 35667778888899 7889999999999999999999999999999999999999998 7999998875421 11
Q ss_pred hhHHHHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHH
Q psy7339 96 LDHYARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVA 151 (223)
Q Consensus 96 ~~~~~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a 151 (223)
...+......+...+ .+|+|+|+ ++++|++||+++|++|++|++++|++++|..+|
T Consensus 88 ~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 167 (269)
T PRK06127 88 VAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAA 167 (269)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHHH
Confidence 122333333333334 49999997 799999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhc
Q psy7339 152 SELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRD 213 (223)
Q Consensus 152 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~ 213 (223)
++++++|++++|+||+++||||+|+|++++++++.+++++++..||.+++.+|+.++.....
T Consensus 168 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~ 229 (269)
T PRK06127 168 KDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLTLRAAKRAIAELLKD 229 (269)
T ss_pred HHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999876443
No 12
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.7e-35 Score=238.94 Aligned_cols=187 Identities=16% Similarity=0.183 Sum_probs=160.6
Q ss_pred cceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh--------hhhH
Q psy7339 28 LAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE--------RLDH 98 (223)
Q Consensus 28 ~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~--------~~~~ 98 (223)
...++.-|+| ...+++|+..|..+..|+.||.++++.++ |+++++||++|.|++||+|.|+..... ....
T Consensus 5 ~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (262)
T PRK08140 5 TILLAIEAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGES 83 (262)
T ss_pred eEEEEeECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHH
Confidence 3456677888 78889999999999999999999999999 999999999999999999988754210 0111
Q ss_pred HHHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHH
Q psy7339 99 YARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASEL 154 (223)
Q Consensus 99 ~~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l 154 (223)
+...+..+...+ .+|+|+|+ ++++|++||+++|++|++|+++++++++|..+|+++
T Consensus 84 ~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l 163 (262)
T PRK08140 84 IETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGL 163 (262)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHH
Confidence 222233333333 49999997 789999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcCc
Q psy7339 155 LYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGH 215 (223)
Q Consensus 155 ~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~ 215 (223)
+++|++++|+||+++||||+|+|++++++++.+++++|+..||.+++.+|+.++......+
T Consensus 164 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~~~~~ 224 (262)
T PRK08140 164 ALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQPTRGLALIKQAMNASATNTL 224 (262)
T ss_pred HHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhCCH
Confidence 9999999999999999999999999999999999999999999999999999987654443
No 13
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.7e-35 Score=237.43 Aligned_cols=182 Identities=15% Similarity=0.124 Sum_probs=156.3
Q ss_pred ceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh----hhhHHHHhH
Q psy7339 29 AEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE----RLDHYARTT 103 (223)
Q Consensus 29 ~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~----~~~~~~~~~ 103 (223)
..++.-++| +..+++++..|..+..|+.||.++++.++ +++++||++|.|+.||+|.|+..... ....+...+
T Consensus 4 v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 81 (255)
T PRK08150 4 VSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRW 81 (255)
T ss_pred EEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHH
Confidence 345566788 67899999999999999999999999997 78999999999999999988764211 111122222
Q ss_pred HHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCC
Q psy7339 104 EQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGR 159 (223)
Q Consensus 104 ~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~ 159 (223)
..+...+ .+|+|+|+ ++++|++||+++|++|++|+++++++++|+.+|++++++|+
T Consensus 82 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~ltg~ 161 (255)
T PRK08150 82 HRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTDMMLTGR 161 (255)
T ss_pred HHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHHHHHcCC
Confidence 3333333 49999997 78999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHh
Q psy7339 160 KLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILR 212 (223)
Q Consensus 160 ~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~ 212 (223)
+++|+||+++||||+|+|++++++++.+++++|+..||.+++.+|+.++....
T Consensus 162 ~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~ 214 (255)
T PRK08150 162 VYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNFAVLNALPRIAD 214 (255)
T ss_pred cCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999987543
No 14
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2e-34 Score=236.72 Aligned_cols=183 Identities=14% Similarity=0.100 Sum_probs=157.5
Q ss_pred cceecc-ccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh------hhhHH
Q psy7339 28 LAEFRL-ADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE------RLDHY 99 (223)
Q Consensus 28 ~~~~~~-~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~------~~~~~ 99 (223)
...++. -++| +..+++++..|..+..|+.||.++++.++.|+++++||++|.|+.||+|.|+..... ....+
T Consensus 12 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 91 (268)
T PRK07327 12 ALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARV 91 (268)
T ss_pred eEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHH
Confidence 344555 3678 788999998999999999999999999999999999999999999999988864211 11111
Q ss_pred HHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHH
Q psy7339 100 ARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELL 155 (223)
Q Consensus 100 ~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ 155 (223)
......+...+ .+|+|+|+ ++++|++||+++|++|++|++++|++++|+.+|++++
T Consensus 92 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ 171 (268)
T PRK07327 92 WREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAKAKYYL 171 (268)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHHHHHHH
Confidence 22222233333 49999997 7899999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhH
Q psy7339 156 YTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGI 210 (223)
Q Consensus 156 l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~ 210 (223)
++|++++|+||+++||||+++|++++++++.+++++|++.||.+++.+|+.++..
T Consensus 172 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~ 226 (268)
T PRK07327 172 LLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGSQTAIRWTKYALNNW 226 (268)
T ss_pred HcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999865
No 15
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.3e-35 Score=237.77 Aligned_cols=183 Identities=16% Similarity=0.093 Sum_probs=156.9
Q ss_pred eccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhh----hhHH-HHhHH
Q psy7339 31 FRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGER----LDHY-ARTTE 104 (223)
Q Consensus 31 ~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~----~~~~-~~~~~ 104 (223)
++.-++| +..+++|+..|..+..|+.||.++++.+++|+++++||++|.|+.||+|.|+...... ...+ ....+
T Consensus 3 ~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 82 (255)
T PRK06563 3 RERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGID 82 (255)
T ss_pred EEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhH
Confidence 3445778 6788999999999999999999999999999999999999999999999888642111 1111 11122
Q ss_pred HHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCC
Q psy7339 105 QVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRK 160 (223)
Q Consensus 105 ~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~ 160 (223)
.+...+ .+|+|+|+ ++++|++||+++|++|++|+++++++++|+.+|++++++|++
T Consensus 83 ~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~ltg~~ 162 (255)
T PRK06563 83 PWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDE 162 (255)
T ss_pred HHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHHHHcCCC
Confidence 222222 49999997 799999999999999999999999999999999999999999
Q ss_pred CCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhc
Q psy7339 161 LNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRD 213 (223)
Q Consensus 161 ~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~ 213 (223)
++|+||+++||||+|+|++++.+++.+++++|+..||.+++.+|+.++.....
T Consensus 163 ~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~ 215 (255)
T PRK06563 163 FDAQEALRLGLVQEVVPPGEQLERAIELAERIARAAPLGVQATLASARAAVRE 215 (255)
T ss_pred cCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999875433
No 16
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-34 Score=237.54 Aligned_cols=185 Identities=18% Similarity=0.182 Sum_probs=158.7
Q ss_pred ceeccccce-eeecccccccccccc-hHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh-----------h
Q psy7339 29 AEFRLADHI-YTRIGFNDSIECNAS-TFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE-----------R 95 (223)
Q Consensus 29 ~~~~~~d~I-~~~~~~~~~~~~~~s-~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~-----------~ 95 (223)
..+..-++| ...+++++..|..+. .|+.||.++++.++.|+++++||++|.|++||+|.|+....+ .
T Consensus 5 v~~~~~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (266)
T PRK09245 5 LLVERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADI 84 (266)
T ss_pred eEEEEECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhH
Confidence 456666788 678888898899885 899999999999999999999999999999999988754211 0
Q ss_pred hhHHHHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHH
Q psy7339 96 LDHYARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVA 151 (223)
Q Consensus 96 ~~~~~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a 151 (223)
...+...+..+...+ .+|+|+|+ ++++|++||+++|++|++|+++++++++|..+|
T Consensus 85 ~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a 164 (266)
T PRK09245 85 RQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIGMARA 164 (266)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhhHHHH
Confidence 112222223333333 39999997 799999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhc
Q psy7339 152 SELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRD 213 (223)
Q Consensus 152 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~ 213 (223)
++++++|++++|+||+++||||+|+|++++++++.+++++|+..||.+++.+|+.++.....
T Consensus 165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~ 226 (266)
T PRK09245 165 AEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANPPHALRLTKRLLREGQHA 226 (266)
T ss_pred HHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999876443
No 17
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-34 Score=237.36 Aligned_cols=184 Identities=16% Similarity=0.136 Sum_probs=158.0
Q ss_pred ceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC-CCcCCCCCCCcchhh--hhHHHHhHH
Q psy7339 29 AEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC-RAGIEPPPSCLPGER--LDHYARTTE 104 (223)
Q Consensus 29 ~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g-~~F~aG~~~~~~~~~--~~~~~~~~~ 104 (223)
..++.-++| ...+++|+..|..+..|+.||.++++.++.|+++++||++|.| ++||+|.|+...... .......+.
T Consensus 6 v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 85 (259)
T PRK06494 6 STVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFG 85 (259)
T ss_pred eEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHH
Confidence 445666788 6788999999999999999999999999999999999999998 799999888642110 001111122
Q ss_pred HHhhhhhcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCCC
Q psy7339 105 QVKNRVLLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKL 161 (223)
Q Consensus 105 ~~~~~~~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~ 161 (223)
.+...+.+|+|+|+ ++++|++||+++|++|++|++++|++++|+.+|++++++|+++
T Consensus 86 ~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~lll~g~~~ 165 (259)
T PRK06494 86 GLTSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRV 165 (259)
T ss_pred HHHHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHHHHHHHHcCCcC
Confidence 23333458999997 7999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHh
Q psy7339 162 NAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILR 212 (223)
Q Consensus 162 ~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~ 212 (223)
+|+||+++||||+++|++++++++.+++++|+..||.+++.+|+.+++...
T Consensus 166 ~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~ 216 (259)
T PRK06494 166 TAREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIRASKQAVYRGLE 216 (259)
T ss_pred CHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999987643
No 18
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=1.6e-34 Score=235.77 Aligned_cols=183 Identities=15% Similarity=0.170 Sum_probs=157.8
Q ss_pred ceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC-CCcCCCCCCCcchh---hhhHHHHhH
Q psy7339 29 AEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC-RAGIEPPPSCLPGE---RLDHYARTT 103 (223)
Q Consensus 29 ~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g-~~F~aG~~~~~~~~---~~~~~~~~~ 103 (223)
..++.-++| ...+++|+..|..+..|+.||.++++.++.|+++++||++|.| +.||+|.|+..... ....+....
T Consensus 4 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (256)
T TIGR03210 4 ILYEKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPM 83 (256)
T ss_pred eEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHH
Confidence 455666788 7789999999999999999999999999999999999999998 79999998864211 011122222
Q ss_pred HHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCC
Q psy7339 104 EQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGR 159 (223)
Q Consensus 104 ~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~ 159 (223)
..+...+ .+++|+|+ ++++|++||+++|++|++++++++++++|+.+|++++++|+
T Consensus 84 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A~~lll~g~ 163 (256)
T TIGR03210 84 EELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKAREIWYLCR 163 (256)
T ss_pred HHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHHHHHHHhCC
Confidence 3333333 49999997 79999999999999988888999999999999999999999
Q ss_pred CCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHH
Q psy7339 160 KLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGIL 211 (223)
Q Consensus 160 ~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~ 211 (223)
+++|+||+++||||+|+|++++++++.+++++|+..||.+++.+|++++...
T Consensus 164 ~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l~~~~ 215 (256)
T TIGR03210 164 RYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIAIAKRSFNMDT 215 (256)
T ss_pred CcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999998753
No 19
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-34 Score=236.35 Aligned_cols=185 Identities=17% Similarity=0.131 Sum_probs=158.8
Q ss_pred ceecc-ccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh--hhhHHHHhHH
Q psy7339 29 AEFRL-ADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE--RLDHYARTTE 104 (223)
Q Consensus 29 ~~~~~-~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~--~~~~~~~~~~ 104 (223)
..++. -|+| ...+++++..|..+..|+.||.++++.+++|+++++||++|.|+.||+|.|+..... ..+.+.....
T Consensus 9 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 88 (261)
T PRK08138 9 VLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTE 88 (261)
T ss_pred EEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHH
Confidence 34554 4678 778899999999999999999999999999999999999999999999988764211 1112222223
Q ss_pred HHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCC
Q psy7339 105 QVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRK 160 (223)
Q Consensus 105 ~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~ 160 (223)
.+...+ .+|+|+|+ ++++|++||+++|++|++|+++++++++|+.+|++++++|++
T Consensus 89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g~~ 168 (261)
T PRK08138 89 RYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCM 168 (261)
T ss_pred HHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHHHHHHHHcCCC
Confidence 333333 39999997 799999999999999999999999999999999999999999
Q ss_pred CCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhc
Q psy7339 161 LNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRD 213 (223)
Q Consensus 161 ~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~ 213 (223)
++|+||+++||||+|+|++++++++.+++++++..||.+++.+|+.++.....
T Consensus 169 ~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~ 221 (261)
T PRK08138 169 VPAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPLALAQIKEVVLAGADA 221 (261)
T ss_pred CCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999875443
No 20
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=1.5e-34 Score=238.23 Aligned_cols=184 Identities=17% Similarity=0.117 Sum_probs=157.9
Q ss_pred eeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh--------------
Q psy7339 30 EFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE-------------- 94 (223)
Q Consensus 30 ~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~-------------- 94 (223)
....-|+| ...+++|+..|..+..|+.||.++++.++.|+++++||++|.|+.||+|.|+.....
T Consensus 11 ~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~ 90 (275)
T PLN02664 11 QKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSG 90 (275)
T ss_pred EecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhH
Confidence 34456788 678999999999999999999999999999999999999999999999988764211
Q ss_pred -hhhHHHHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHH
Q psy7339 95 -RLDHYARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNS 149 (223)
Q Consensus 95 -~~~~~~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~ 149 (223)
..+.+...+..+...+ .+|+|+|+ ++++|++||+++|++|++|+++++++++|++
T Consensus 91 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 170 (275)
T PLN02664 91 ERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGYG 170 (275)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCHH
Confidence 1111122223333333 49999997 7899999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCccccccCC-hhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhc
Q psy7339 150 VASELLYTGRKLNAQEALQYGFVSGVFTT-EEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRD 213 (223)
Q Consensus 150 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~ 213 (223)
+|++++++|++++|+||+++||||++||+ +++.+.+.+++++|+..||.+++.+|+.++.....
T Consensus 171 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~~~K~~l~~~~~~ 235 (275)
T PLN02664 171 NAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVTGTKAVLLRSREL 235 (275)
T ss_pred HHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999995 88999999999999999999999999999876443
No 21
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=1.9e-34 Score=235.40 Aligned_cols=181 Identities=16% Similarity=0.184 Sum_probs=156.0
Q ss_pred ccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh-------hhhHHHHhH
Q psy7339 32 RLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE-------RLDHYARTT 103 (223)
Q Consensus 32 ~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~-------~~~~~~~~~ 103 (223)
+.-++| ...+++|+..|..+..|+.||.++++.+++|+ +++||++|.|++||+|.|+..... ....+...+
T Consensus 4 e~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~ 82 (256)
T TIGR02280 4 ALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFY 82 (256)
T ss_pred EEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHH
Confidence 445778 67888999999999999999999999999988 999999999999999988764211 011122222
Q ss_pred HHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCC
Q psy7339 104 EQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGR 159 (223)
Q Consensus 104 ~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~ 159 (223)
..+...+ .+|+|+|+ ++++|++||+++|++|++|+++++++++|+.+|++++++|+
T Consensus 83 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~l~g~ 162 (256)
T TIGR02280 83 NPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGE 162 (256)
T ss_pred HHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHHHcCC
Confidence 3333333 49999997 79999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhc
Q psy7339 160 KLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRD 213 (223)
Q Consensus 160 ~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~ 213 (223)
+++|+||+++||||+|+|++++++++.+++++++..||.+++.+|+.++.....
T Consensus 163 ~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~K~~l~~~~~~ 216 (256)
T TIGR02280 163 KLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGLALTKRAIQAAATN 216 (256)
T ss_pred CCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcC
Confidence 999999999999999999999999999999999999999999999999876443
No 22
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-34 Score=235.33 Aligned_cols=184 Identities=14% Similarity=0.050 Sum_probs=157.9
Q ss_pred cceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhh--hhHHHHhHH
Q psy7339 28 LAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGER--LDHYARTTE 104 (223)
Q Consensus 28 ~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~--~~~~~~~~~ 104 (223)
...++.-++| +..+++|+..|..+..|+.+|.++++.++.|+++++||++|.|+.||+|.|+...... ...+...+.
T Consensus 4 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (254)
T PRK08252 4 EVLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFG 83 (254)
T ss_pred eEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHH
Confidence 3456667888 7788999999999999999999999999999999999999999999999887642211 011111111
Q ss_pred HHhhhhhcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCCC
Q psy7339 105 QVKNRVLLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKL 161 (223)
Q Consensus 105 ~~~~~~~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~ 161 (223)
.+.. ..+|+|+|+ ++++|++||+++|++|++|++++|++++|+.+|++++++|+++
T Consensus 84 ~~~~-~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~ 162 (254)
T PRK08252 84 GLTE-RPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDML 162 (254)
T ss_pred HHHH-hcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHHHHHHHcCCcc
Confidence 1111 248999997 7999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHh
Q psy7339 162 NAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILR 212 (223)
Q Consensus 162 ~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~ 212 (223)
+|+||+++||||+|+|++++++++.+++++++..||.+++.+|++++....
T Consensus 163 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~ 213 (254)
T PRK08252 163 TAERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVAASKRIVVESGD 213 (254)
T ss_pred CHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999987643
No 23
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=2.1e-34 Score=235.38 Aligned_cols=182 Identities=16% Similarity=0.153 Sum_probs=156.2
Q ss_pred ceecc-ccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC-CCcCCCCCCCcchhh----hhH-HH
Q psy7339 29 AEFRL-ADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC-RAGIEPPPSCLPGER----LDH-YA 100 (223)
Q Consensus 29 ~~~~~-~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g-~~F~aG~~~~~~~~~----~~~-~~ 100 (223)
..+.. -++| ...+++++..|..+..|+.||.++++.++.|+++++||++|.| +.||+|.|+...... ... ..
T Consensus 4 i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (259)
T TIGR01929 4 IRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHR 83 (259)
T ss_pred EEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHH
Confidence 44555 5778 6788999999999999999999999999999999999999999 799999887532110 000 00
Q ss_pred HhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHH
Q psy7339 101 RTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLY 156 (223)
Q Consensus 101 ~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l 156 (223)
.....+...+ .+|+|+|+ ++++|++||+++|++|+++++++|++++|+.+|+++++
T Consensus 84 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a~~l~l 163 (259)
T TIGR01929 84 LNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKAREIWF 163 (259)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHHHHHHH
Confidence 0112233333 49999997 79999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhH
Q psy7339 157 TGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGI 210 (223)
Q Consensus 157 ~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~ 210 (223)
+|++++|+||+++||||+|+|++++++++.+++++|+..||.+++.+|++++..
T Consensus 164 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~ 217 (259)
T TIGR01929 164 LCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAIRMLKAALNAD 217 (259)
T ss_pred hCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999875
No 24
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-34 Score=235.59 Aligned_cols=183 Identities=14% Similarity=0.136 Sum_probs=156.4
Q ss_pred ceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC-CCcCCCCCCCcchh----hhhHHHHh
Q psy7339 29 AEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC-RAGIEPPPSCLPGE----RLDHYART 102 (223)
Q Consensus 29 ~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g-~~F~aG~~~~~~~~----~~~~~~~~ 102 (223)
..++.-++| ...+++|+. |..+..|+.||.++++.+++|+++++||++|.| ++||+|.|+..... ....+...
T Consensus 5 v~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (258)
T PRK09076 5 LDLEIDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARR 83 (258)
T ss_pred EEEEEECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHH
Confidence 345566778 667888865 999999999999999999999999999999998 78999988864211 11122222
Q ss_pred HHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcC
Q psy7339 103 TEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTG 158 (223)
Q Consensus 103 ~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g 158 (223)
+..+...+ .+|+|+|+ ++++|++||+++|++|++|++++|++++|..+|++++++|
T Consensus 84 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~l~l~g 163 (258)
T PRK09076 84 FGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWAKRMILCG 163 (258)
T ss_pred HHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcC
Confidence 23333333 49999997 7999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHh
Q psy7339 159 RKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILR 212 (223)
Q Consensus 159 ~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~ 212 (223)
++++|+||+++||||+|+|++++++++.+++++|+..||.+++.+|++++....
T Consensus 164 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~ 217 (258)
T PRK09076 164 ERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVAACKTLIQAARN 217 (258)
T ss_pred CcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999987543
No 25
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.2e-34 Score=234.94 Aligned_cols=187 Identities=18% Similarity=0.229 Sum_probs=161.0
Q ss_pred ceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh-----hhh---HH
Q psy7339 29 AEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE-----RLD---HY 99 (223)
Q Consensus 29 ~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~-----~~~---~~ 99 (223)
..+..-++| ...+++|+..|..+..|+.||.++++.++.++++++||++|.|+.||+|.|+..... ... .+
T Consensus 4 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 83 (255)
T PRK07260 4 IIYEVEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKI 83 (255)
T ss_pred eEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHH
Confidence 455666888 678899999999999999999999999999999999999999999999988764211 111 12
Q ss_pred HHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHH
Q psy7339 100 ARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELL 155 (223)
Q Consensus 100 ~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ 155 (223)
.+....+...+ .+|+|+|+ ++++|++||+++|++|++|+++++++++|+.++++++
T Consensus 84 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ 163 (255)
T PRK07260 84 AELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLA 163 (255)
T ss_pred HHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHHHHH
Confidence 22223333333 49999997 7999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcCc
Q psy7339 156 YTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGH 215 (223)
Q Consensus 156 l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~ 215 (223)
++|++++|+||+++||||+++|++++++.+.+++++++..||.+++.+|+.++......+
T Consensus 164 l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~~ 223 (255)
T PRK07260 164 MTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSSNSYAAIKSLVWESFFKGW 223 (255)
T ss_pred HhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcCH
Confidence 999999999999999999999999999999999999999999999999999988755444
No 26
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-34 Score=235.73 Aligned_cols=183 Identities=19% Similarity=0.224 Sum_probs=157.3
Q ss_pred ceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh-----hhhHHHHh
Q psy7339 29 AEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE-----RLDHYART 102 (223)
Q Consensus 29 ~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~-----~~~~~~~~ 102 (223)
..++.-++| +..+++++. |..+..|+.||.++++.++.++++++||++|.|+.||+|.|+..... ....+...
T Consensus 4 i~~~~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 82 (257)
T PRK07658 4 LSVRVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQL 82 (257)
T ss_pred EEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHH
Confidence 345566788 667888865 99999999999999999999999999999999999999988754211 11222223
Q ss_pred HHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcC
Q psy7339 103 TEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTG 158 (223)
Q Consensus 103 ~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g 158 (223)
.+.+...+ .+|+|+|+ ++++|++||+++|++|++|++++|++++|..+|++++++|
T Consensus 83 ~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g 162 (257)
T PRK07658 83 GQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEMMLTS 162 (257)
T ss_pred HHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHHHHcC
Confidence 33333344 49999997 7999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHh
Q psy7339 159 RKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILR 212 (223)
Q Consensus 159 ~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~ 212 (223)
++++++||+++||||+++|++++++++.+++++++..||.+++.+|+.++....
T Consensus 163 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~ 216 (257)
T PRK07658 163 EPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATTRAVLELLQTTKS 216 (257)
T ss_pred CCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999987543
No 27
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=5.4e-34 Score=227.78 Aligned_cols=177 Identities=15% Similarity=0.138 Sum_probs=153.0
Q ss_pred ccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh----hhhHHHHhHHHHhh
Q psy7339 34 ADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE----RLDHYARTTEQVKN 108 (223)
Q Consensus 34 ~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~----~~~~~~~~~~~~~~ 108 (223)
.++| ...+++++ .|..+..|+.||.++++.++.++++++||+||.|+.||+|.|+..... ....+.+....+..
T Consensus 15 ~~~i~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 93 (222)
T PRK05869 15 DAGLATLLLSRPP-TNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVD 93 (222)
T ss_pred cCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHH
Confidence 4678 56677776 599999999999999999999999999999999999999988764211 11112222233333
Q ss_pred hh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCCCCHH
Q psy7339 109 RV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQ 164 (223)
Q Consensus 109 ~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~ 164 (223)
.+ .+|+|+|+ ++++|++||+++|++|++++++++++++|+.+|++++++|++++|+
T Consensus 94 ~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l~ltg~~~~a~ 173 (222)
T PRK05869 94 AVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAE 173 (222)
T ss_pred HHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHH
Confidence 34 49999997 7899999999999999999999999999999999999999999999
Q ss_pred HHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHH
Q psy7339 165 EALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGIL 211 (223)
Q Consensus 165 eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~ 211 (223)
||+++||||+++|++++++++.+++++|+..||.+++.+|+.+++..
T Consensus 174 eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~~~~~~ 220 (222)
T PRK05869 174 EALALGLIDEMVAPDDVYDAAAAWARRFLDGPPHALAAAKAGISDVY 220 (222)
T ss_pred HHHHCCCCCEeeCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998764
No 28
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.8e-34 Score=236.51 Aligned_cols=184 Identities=16% Similarity=0.111 Sum_probs=158.2
Q ss_pred ceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhh------hhH-H-
Q psy7339 29 AEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGER------LDH-Y- 99 (223)
Q Consensus 29 ~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~------~~~-~- 99 (223)
..++.-++| +..+++|+..|..+..|+.||.++++.++.|+++++||++|.|+.||+|.|+...... ... +
T Consensus 7 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 86 (263)
T PRK07799 7 ALVEQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYD 86 (263)
T ss_pred EEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhh
Confidence 455666788 7789999999999999999999999999999999999999999999999887642110 000 1
Q ss_pred HHhHHHHhhhhhcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHH
Q psy7339 100 ARTTEQVKNRVLLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLY 156 (223)
Q Consensus 100 ~~~~~~~~~~~~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l 156 (223)
...+..+.....+|+|+|+ ++++|++||+++|++|++|++++|++++|+++|+++++
T Consensus 87 ~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a~~l~l 166 (263)
T PRK07799 87 PSRIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLL 166 (263)
T ss_pred hhHHHHHHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHHHHHHH
Confidence 1112223322348999997 79999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHh
Q psy7339 157 TGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILR 212 (223)
Q Consensus 157 ~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~ 212 (223)
+|++++|+||+++||||+|+|++++++++.+++++++..||.+++.+|+.++....
T Consensus 167 tg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a~~~~K~~l~~~~~ 222 (263)
T PRK07799 167 TGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANGPLAVQAILRTIRETEG 222 (263)
T ss_pred cCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999987643
No 29
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3e-34 Score=233.57 Aligned_cols=182 Identities=16% Similarity=0.127 Sum_probs=156.3
Q ss_pred ceecccc---ce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh---hhhHHHH
Q psy7339 29 AEFRLAD---HI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE---RLDHYAR 101 (223)
Q Consensus 29 ~~~~~~d---~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~---~~~~~~~ 101 (223)
..++.-+ +| ...+++|+..|..+..|+.+|.++++.+++|+++++||++|.|+.||+|.|++.... ....+..
T Consensus 5 i~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 84 (251)
T PRK06023 5 ILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGS 84 (251)
T ss_pred EEEEeecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHH
Confidence 4455444 37 778999999999999999999999999999999999999999999999988753211 0111222
Q ss_pred hHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHc
Q psy7339 102 TTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYT 157 (223)
Q Consensus 102 ~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~ 157 (223)
....+...+ .+|+|+|+ ++++|++||+++|++|++|+++++++++|+.+|++++++
T Consensus 85 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~l~l~ 164 (251)
T PRK06023 85 EILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLAL 164 (251)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHHHHHHHHh
Confidence 222333333 49999997 799999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhH
Q psy7339 158 GRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGI 210 (223)
Q Consensus 158 g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~ 210 (223)
|++++|+||+++||||+|+|++++++++.+++++|+..||.+++.+|+.++..
T Consensus 165 g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~ 217 (251)
T PRK06023 165 GEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQALQIARDLMRGP 217 (251)
T ss_pred CCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999864
No 30
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-34 Score=234.42 Aligned_cols=186 Identities=18% Similarity=0.180 Sum_probs=159.3
Q ss_pred cceecc-ccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC-CCcCCCCCCCcch----hhhhHHH
Q psy7339 28 LAEFRL-ADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC-RAGIEPPPSCLPG----ERLDHYA 100 (223)
Q Consensus 28 ~~~~~~-~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g-~~F~aG~~~~~~~----~~~~~~~ 100 (223)
...++. -++| ...+++++..|..+..|+.||.++++.+++|+++++||++|.| +.||+|.|+.... .....+.
T Consensus 4 ~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 83 (260)
T PRK07657 4 NISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAV 83 (260)
T ss_pred eEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHH
Confidence 344553 4678 6788999999999999999999999999999999999999999 5999998875421 1112222
Q ss_pred HhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHH
Q psy7339 101 RTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLY 156 (223)
Q Consensus 101 ~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l 156 (223)
.....+...+ .+|+|+|+ ++++|++||+++|++|++|++++|++++|+++|+++++
T Consensus 84 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~~l~l 163 (260)
T PRK07657 84 SLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKELIY 163 (260)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHHHHHHHHH
Confidence 2223333333 49999997 79999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhc
Q psy7339 157 TGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRD 213 (223)
Q Consensus 157 ~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~ 213 (223)
+|++++|+||+++||||+++|++++++++.+++++++..||.+++.+|+.++.....
T Consensus 164 ~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~ 220 (260)
T PRK07657 164 TGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIAVRQAKEAISNGIQV 220 (260)
T ss_pred hCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999876433
No 31
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4e-34 Score=234.18 Aligned_cols=185 Identities=16% Similarity=0.141 Sum_probs=160.2
Q ss_pred cceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC-CCcCCCCCCCcchh-----hhhHHH
Q psy7339 28 LAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC-RAGIEPPPSCLPGE-----RLDHYA 100 (223)
Q Consensus 28 ~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g-~~F~aG~~~~~~~~-----~~~~~~ 100 (223)
...++.-++| +..+++|+..|..+..|+.||.++++.++.|+++++||++|.| ++||+|.|+..... ....+.
T Consensus 9 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 88 (262)
T PRK06144 9 ELLLEVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYE 88 (262)
T ss_pred ceEEEeeCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHH
Confidence 4556777889 6789999999999999999999999999999999999999998 79999988764211 111222
Q ss_pred HhHHHHhhhh-hcccceee-----------------------ecceeeccccc-cccCCCCccccchhhhcCHHHHHHHH
Q psy7339 101 RTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTL-RGMTPEGCSSVLFPRIFGNSVASELL 155 (223)
Q Consensus 101 ~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~-~Gl~p~~g~~~~l~~~vg~~~a~~l~ 155 (223)
..+..+...+ .+|+|+|+ ++++|++||++ +|++|++|++++|++++|+++|++++
T Consensus 89 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~vG~~~a~~l~ 168 (262)
T PRK06144 89 RRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALLGAARVKDML 168 (262)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHhCHHHHHHHH
Confidence 2233333333 49999997 79999999997 99999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHh
Q psy7339 156 YTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILR 212 (223)
Q Consensus 156 l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~ 212 (223)
++|++++|+||+++||||+|+|++++++++.+++++|+..||.+++.+|+.++....
T Consensus 169 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~ 225 (262)
T PRK06144 169 FTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHAPLTLRATKEALRRLRR 225 (262)
T ss_pred HcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999987643
No 32
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.5e-34 Score=236.29 Aligned_cols=187 Identities=17% Similarity=0.194 Sum_probs=160.1
Q ss_pred ceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcch--------hhhhHH
Q psy7339 29 AEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPG--------ERLDHY 99 (223)
Q Consensus 29 ~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~--------~~~~~~ 99 (223)
..++.-|+| ...+++++..|..+..|+.||.++++.++.|+++++||++|.|+.||+|.|+.... .....+
T Consensus 19 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~ 98 (277)
T PRK08258 19 FLWEVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAF 98 (277)
T ss_pred eEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHH
Confidence 456667888 77888889999999999999999999999999999999999999999998876421 111123
Q ss_pred HHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCC-CCccccchhhhcCHHHHHHH
Q psy7339 100 ARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTP-EGCSSVLFPRIFGNSVASEL 154 (223)
Q Consensus 100 ~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p-~~g~~~~l~~~vg~~~a~~l 154 (223)
......+...+ .+|+|+|+ ++++|++||+++|++| ++|+++++++++|..+|+++
T Consensus 99 ~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~~l 178 (277)
T PRK08258 99 TRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRASEL 178 (277)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHHHH
Confidence 33333333334 39999997 7899999999999995 67889999999999999999
Q ss_pred HHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcCc
Q psy7339 155 LYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGH 215 (223)
Q Consensus 155 ~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~ 215 (223)
+++|++++|+||+++||||+|+|++++++++.+++++|+..||.+++.+|+.++......+
T Consensus 179 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l 239 (277)
T PRK08258 179 LYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGPTFAHGMTKTMLHQEWDMGL 239 (277)
T ss_pred HHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCCH
Confidence 9999999999999999999999999999999999999999999999999999987644433
No 33
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=3.4e-34 Score=234.47 Aligned_cols=185 Identities=21% Similarity=0.218 Sum_probs=159.6
Q ss_pred ceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC-CCcCCCCCCCcchh----hhhHHHHh
Q psy7339 29 AEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC-RAGIEPPPSCLPGE----RLDHYART 102 (223)
Q Consensus 29 ~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g-~~F~aG~~~~~~~~----~~~~~~~~ 102 (223)
..++.-++| ...+++++..|..+..|+.||.++++.+++++++++||++|.| +.||+|.|+..... ....+...
T Consensus 6 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 85 (260)
T PRK05809 6 VILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLL 85 (260)
T ss_pred EEEEEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHH
Confidence 445566778 6788899999999999999999999999999999999999999 99999988864221 11122222
Q ss_pred HHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcC
Q psy7339 103 TEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTG 158 (223)
Q Consensus 103 ~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g 158 (223)
...+...+ .+|+|+|+ ++++|++||+++|++|++|++++|++++|+.+|++++++|
T Consensus 86 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l~l~g 165 (260)
T PRK05809 86 GNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTG 165 (260)
T ss_pred HHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHhC
Confidence 23333333 49999997 7999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhc
Q psy7339 159 RKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRD 213 (223)
Q Consensus 159 ~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~ 213 (223)
++++|+||+++||||+|+|++++++++.+++++|+..||.+++.+|+.+++....
T Consensus 166 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~ 220 (260)
T PRK05809 166 DMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAVKLCKDAINRGMQV 220 (260)
T ss_pred CCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999876443
No 34
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.2e-34 Score=233.16 Aligned_cols=182 Identities=15% Similarity=0.139 Sum_probs=156.6
Q ss_pred ceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh-----hhhHHHHh
Q psy7339 29 AEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE-----RLDHYART 102 (223)
Q Consensus 29 ~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~-----~~~~~~~~ 102 (223)
..++.-|+| ...+++|+..|..+..|+.||.++++.+++|+++++||++|.|+.||+|.|+..... ..+.+...
T Consensus 5 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~ 84 (249)
T PRK05870 5 VLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRI 84 (249)
T ss_pred EEEEccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHH
Confidence 445666788 778899999999999999999999999999999999999999999999988764211 11112222
Q ss_pred HHHHhhhhhcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCC
Q psy7339 103 TEQVKNRVLLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGR 159 (223)
Q Consensus 103 ~~~~~~~~~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~ 159 (223)
.+.+.....+|+|+|+ ++++|++||+++|++|++|+++++++++|+++|++++++|+
T Consensus 85 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~ 164 (249)
T PRK05870 85 YDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGM 164 (249)
T ss_pred HHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHHHHHHHhCC
Confidence 2222222249999997 78999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHh
Q psy7339 160 KLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILR 212 (223)
Q Consensus 160 ~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~ 212 (223)
+++|+||+++||||+++ +++++++.+++++++..||.+++.+|+.++....
T Consensus 165 ~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~ 215 (249)
T PRK05870 165 RFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAPRELVLATKASMRATAS 215 (249)
T ss_pred ccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccc
Confidence 99999999999999999 7899999999999999999999999999987644
No 35
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-34 Score=234.20 Aligned_cols=185 Identities=13% Similarity=0.068 Sum_probs=159.8
Q ss_pred ceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh-------hhhHHH
Q psy7339 29 AEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE-------RLDHYA 100 (223)
Q Consensus 29 ~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~-------~~~~~~ 100 (223)
..+...|+| +..+++++..|..+..|+.||.++++.+++++++++||++|.|+.||+|.|+..... ....+.
T Consensus 5 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07511 5 LLSRREGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASI 84 (260)
T ss_pred eEEEeECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHH
Confidence 456667888 678899999999999999999999999999999999999999999999988754211 111222
Q ss_pred HhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHH
Q psy7339 101 RTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLY 156 (223)
Q Consensus 101 ~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l 156 (223)
.....+...+ .+|+|+|+ ++++|++||+++|++|++|+++++++++|+++++++++
T Consensus 85 ~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l 164 (260)
T PRK07511 85 DGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLATELLL 164 (260)
T ss_pred HHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHHHHHH
Confidence 2223333333 39999997 78999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhc
Q psy7339 157 TGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRD 213 (223)
Q Consensus 157 ~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~ 213 (223)
+|++++++||+++||||+|+|++++.+++.+++++++..||.++..+|+.++.....
T Consensus 165 tg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~ 221 (260)
T PRK07511 165 EGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGSPNALARIKSLIADAPEA 221 (260)
T ss_pred hCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcC
Confidence 999999999999999999999999999999999999999999999999999876443
No 36
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=3.7e-34 Score=234.80 Aligned_cols=185 Identities=15% Similarity=0.088 Sum_probs=157.9
Q ss_pred cceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh-----hhhHHHH
Q psy7339 28 LAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE-----RLDHYAR 101 (223)
Q Consensus 28 ~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~-----~~~~~~~ 101 (223)
...++.-++| ...+++++..|..+..++.||.++++.++.|+++++||++|.|+.||+|.|+..... ....+..
T Consensus 12 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 91 (266)
T PRK08139 12 LLLREDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFA 91 (266)
T ss_pred ceEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHH
Confidence 4556777888 778899999999999999999999999999999999999999999999988754211 1122222
Q ss_pred hHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHc
Q psy7339 102 TTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYT 157 (223)
Q Consensus 102 ~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~ 157 (223)
.+..+...+ .+|+|+|+ ++++|++||+++|++|+++ .+++++++|+.+|++++++
T Consensus 92 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A~~l~lt 170 (266)
T PRK08139 92 RCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQAMEMLLT 170 (266)
T ss_pred HHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHHHHHHHc
Confidence 223333333 49999997 7999999999999998765 5689999999999999999
Q ss_pred CCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhc
Q psy7339 158 GRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRD 213 (223)
Q Consensus 158 g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~ 213 (223)
|++++|+||+++||||+|+|++++++++.+++++|+..||.+++.+|+.+++....
T Consensus 171 g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~ 226 (266)
T PRK08139 171 GEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKSPAAVRIGKEAFYRQAEM 226 (266)
T ss_pred CCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999876443
No 37
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.7e-34 Score=234.10 Aligned_cols=186 Identities=15% Similarity=0.077 Sum_probs=158.2
Q ss_pred ceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhh-hhHHHH-hHHH
Q psy7339 29 AEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGER-LDHYAR-TTEQ 105 (223)
Q Consensus 29 ~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~-~~~~~~-~~~~ 105 (223)
..++.-++| ...+++++..|..+..|+.||.++++.+++|+++++||++|.|+.||+|.|+...... ...... ....
T Consensus 5 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 84 (254)
T PRK08259 5 VRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGP 84 (254)
T ss_pred EEEEEECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcch
Confidence 455666788 6788999999999999999999999999999999999999999999999887642111 011110 0011
Q ss_pred -Hhhhhhcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCCC
Q psy7339 106 -VKNRVLLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKL 161 (223)
Q Consensus 106 -~~~~~~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~ 161 (223)
....+.+|+|+|+ ++++|++||+++|++|.+|++++|++++|+.+|++++++|+++
T Consensus 85 ~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~lll~g~~~ 164 (254)
T PRK08259 85 MGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRAMDLILTGRPV 164 (254)
T ss_pred hhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcc
Confidence 1122358999997 7899999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcC
Q psy7339 162 NAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDG 214 (223)
Q Consensus 162 ~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~ 214 (223)
+|+||+++||||+|+|++++++++.+++++|+..||.+++.+|+.+++.....
T Consensus 165 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~~ 217 (254)
T PRK08259 165 DADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLRADRLSALEQWGLP 217 (254)
T ss_pred CHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999998754433
No 38
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-33 Score=233.00 Aligned_cols=183 Identities=21% Similarity=0.207 Sum_probs=156.2
Q ss_pred cceecc-ccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh--------hhh
Q psy7339 28 LAEFRL-ADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE--------RLD 97 (223)
Q Consensus 28 ~~~~~~-~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~--------~~~ 97 (223)
...++. .++| ...+++++..|..+..|+.||.++++.+++|+++++||++|.|+.||+|.|+..... ...
T Consensus 10 ~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 89 (276)
T PRK05864 10 LVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPT 89 (276)
T ss_pred ceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchh
Confidence 344554 5678 778999999999999999999999999999999999999999999999988764210 000
Q ss_pred ---HHHHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCC-CCccccchhhhcCHH
Q psy7339 98 ---HYARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTP-EGCSSVLFPRIFGNS 149 (223)
Q Consensus 98 ---~~~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p-~~g~~~~l~~~vg~~ 149 (223)
.+......+...+ .+++|+|+ ++++|++||+++|++| ++|++++|++++|+.
T Consensus 90 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~ 169 (276)
T PRK05864 90 YALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSS 169 (276)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhhCHH
Confidence 1112222333333 49999997 7899999999999997 688899999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhH
Q psy7339 150 VASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGI 210 (223)
Q Consensus 150 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~ 210 (223)
+|++++++|++++|+||+++||||+|+|++++++++.+++++|+..||.+++.+|+.++..
T Consensus 170 ~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~ 230 (276)
T PRK05864 170 RAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGIELTKRTLWSG 230 (276)
T ss_pred HHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999865
No 39
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=5.9e-34 Score=233.45 Aligned_cols=186 Identities=14% Similarity=0.106 Sum_probs=156.0
Q ss_pred ceeccc-cce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh-----hhhH--H
Q psy7339 29 AEFRLA-DHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE-----RLDH--Y 99 (223)
Q Consensus 29 ~~~~~~-d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~-----~~~~--~ 99 (223)
..++.. ++| ...+++|+..|..+..|+.||.++++.++.|+++++||++|.|+.||+|.|+..... ..+. .
T Consensus 7 l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 86 (265)
T PRK05674 7 IELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDD 86 (265)
T ss_pred EEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHH
Confidence 455553 578 678899999999999999999999999999999999999999999999988763211 0001 1
Q ss_pred HHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHH
Q psy7339 100 ARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELL 155 (223)
Q Consensus 100 ~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ 155 (223)
...+..+...+ .+|+|+|+ ++++|++||+++|++|++++. ++++++|.++|++++
T Consensus 87 ~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~a~~l~ 165 (265)
T PRK05674 87 ARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGERAARRYA 165 (265)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHHHHHHHH
Confidence 11122233333 49999997 789999999999999987665 588999999999999
Q ss_pred HcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcCc
Q psy7339 156 YTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGH 215 (223)
Q Consensus 156 l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~ 215 (223)
++|++++|+||+++||||+|+|++++.+++.+++++++..||.+++.+|+.++......+
T Consensus 166 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~ 225 (265)
T PRK05674 166 LTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNSPQALRASKDLLREVGDGEL 225 (265)
T ss_pred HhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhccCh
Confidence 999999999999999999999999999999999999999999999999999988755444
No 40
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.5e-34 Score=233.74 Aligned_cols=188 Identities=18% Similarity=0.203 Sum_probs=162.1
Q ss_pred Ccceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhhh---hHHHHh
Q psy7339 27 SLAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERL---DHYART 102 (223)
Q Consensus 27 ~~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~~---~~~~~~ 102 (223)
....+..-++| +..+++++..|..+..++.+|.++++.+++|+++++||++|.|+.||+|.|+....... ..+...
T Consensus 5 ~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 84 (259)
T PRK06688 5 TDLLVELEDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAP 84 (259)
T ss_pred CceEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHH
Confidence 44566777888 67889999999999999999999999999999999999999999999998875421110 122333
Q ss_pred HHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcC
Q psy7339 103 TEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTG 158 (223)
Q Consensus 103 ~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g 158 (223)
+..+...+ .+|+|+|+ ++++|++||+++|++|++|+++++++++|+.+|++++++|
T Consensus 85 ~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~l~g 164 (259)
T PRK06688 85 VNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLG 164 (259)
T ss_pred HHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHHHHHHHhC
Confidence 33333334 39999997 7999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcC
Q psy7339 159 RKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDG 214 (223)
Q Consensus 159 ~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~ 214 (223)
++++|+||+++||||+++|++++++++.+++++++..||.+++.+|+.+++.....
T Consensus 165 ~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a~~~~K~~l~~~~~~~ 220 (259)
T PRK06688 165 EPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASALRYTKRAINAATLTE 220 (259)
T ss_pred CccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhCC
Confidence 99999999999999999999999999999999999999999999999998765443
No 41
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.5e-34 Score=233.21 Aligned_cols=188 Identities=19% Similarity=0.227 Sum_probs=160.8
Q ss_pred cceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCC-CeEEEEcCCCCCcCCCCCCCcchh----------h
Q psy7339 28 LAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTP-RSLILVDELCRAGIEPPPSCLPGE----------R 95 (223)
Q Consensus 28 ~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~-~~vvvl~~~g~~F~aG~~~~~~~~----------~ 95 (223)
...++.-++| +..+++++..|..+..|+.||.++++.++.|++ +++||++|.|++||+|.|+..... .
T Consensus 5 ~v~~~~~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 84 (266)
T PRK05981 5 KVTLDFDGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDA 84 (266)
T ss_pred eEEEEeECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchh
Confidence 3556667888 678899999999999999999999999998764 999999999999999988764211 1
Q ss_pred hhHHHHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHH
Q psy7339 96 LDHYARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVA 151 (223)
Q Consensus 96 ~~~~~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a 151 (223)
...+...+..+...+ .+|+|+|+ ++++|++||+++|++|++|+++++++++|+.+|
T Consensus 85 ~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~~~a 164 (266)
T PRK05981 85 GAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGKARA 164 (266)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHHHHH
Confidence 122223333344444 49999997 789999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcCc
Q psy7339 152 SELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGH 215 (223)
Q Consensus 152 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~ 215 (223)
++++++|++++|+||+++||||+++|++++++++.+++++++..||.+++.+|+.++......+
T Consensus 165 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~ 228 (266)
T PRK05981 165 MELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGPTVALGLIRKLYWDSPENDF 228 (266)
T ss_pred HHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhcCH
Confidence 9999999999999999999999999999999999999999999999999999999987654443
No 42
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-33 Score=230.61 Aligned_cols=187 Identities=17% Similarity=0.147 Sum_probs=157.1
Q ss_pred cceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh-----hhhHH--
Q psy7339 28 LAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE-----RLDHY-- 99 (223)
Q Consensus 28 ~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~-----~~~~~-- 99 (223)
...+..-++| ...+++|+..|..+..|+.||.++++.++.|+++++||++|.|+.||+|.|+..... ..+.+
T Consensus 5 ~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (262)
T PRK05995 5 TLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRAD 84 (262)
T ss_pred eEEEEeeCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhH
Confidence 3556666788 678889999999999999999999999999999999999999999999988754211 01111
Q ss_pred HHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHH
Q psy7339 100 ARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELL 155 (223)
Q Consensus 100 ~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ 155 (223)
...+..+...+ .+|+|+|+ ++++|++||+++|++|++++. ++++++|+++|++++
T Consensus 85 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~~a~~l~ 163 (262)
T PRK05995 85 ARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGERAARRYF 163 (262)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHHHHHHHH
Confidence 11122233333 49999997 799999999999999988765 589999999999999
Q ss_pred HcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcCc
Q psy7339 156 YTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGH 215 (223)
Q Consensus 156 l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~ 215 (223)
++|++++|+||+++||||+|+|++++++++.+++++|+..||.+++.+|+.++......+
T Consensus 164 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~ 223 (262)
T PRK05995 164 LTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANSPQAVRAGKRLVRDVAGRPI 223 (262)
T ss_pred HcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCh
Confidence 999999999999999999999999999999999999999999999999999987644433
No 43
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=8.3e-34 Score=230.67 Aligned_cols=185 Identities=12% Similarity=0.083 Sum_probs=159.6
Q ss_pred eeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhh---hhHHHHhHHH
Q psy7339 30 EFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGER---LDHYARTTEQ 105 (223)
Q Consensus 30 ~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~---~~~~~~~~~~ 105 (223)
.++.-++| ...+++++..|..+..|+.||.++++.++.++++++||++|.|+.||+|.|+...... ...+.. ..
T Consensus 8 ~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~--~~ 85 (249)
T PRK07110 8 LREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTE--AN 85 (249)
T ss_pred EEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhh--HH
Confidence 35566788 6688889999999999999999999999999999999999999999999887542211 111221 22
Q ss_pred Hhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCCC
Q psy7339 106 VKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKL 161 (223)
Q Consensus 106 ~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~ 161 (223)
+...+ .+|+|+|+ ++++|++||+++|++|++++++++++++|+.+|++++++|+++
T Consensus 86 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a~~llltg~~~ 165 (249)
T PRK07110 86 LYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYY 165 (249)
T ss_pred HHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHHHHHHHcCCcc
Confidence 32333 49999997 7899999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcCcC
Q psy7339 162 NAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGHA 216 (223)
Q Consensus 162 ~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~ 216 (223)
+++||+++||||+|+|++++++++.++++++++.||.+++.+|+.++......++
T Consensus 166 ~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~ 220 (249)
T PRK07110 166 RGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSLVLLKDHLVADRRRRLP 220 (249)
T ss_pred CHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccHH
Confidence 9999999999999999999999999999999999999999999999977655544
No 44
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.3e-34 Score=231.82 Aligned_cols=186 Identities=12% Similarity=0.201 Sum_probs=158.4
Q ss_pred cceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh-----hhhHHHH
Q psy7339 28 LAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE-----RLDHYAR 101 (223)
Q Consensus 28 ~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~-----~~~~~~~ 101 (223)
...++.-++| ...+++++..|..+..|+.||.++++.+ .++++++||++|.|+.||+|.|+..... ....+..
T Consensus 7 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 85 (260)
T PRK07659 7 SVVVKYEGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMN 85 (260)
T ss_pred eEEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHH
Confidence 3556667888 6688889999999999999999999999 5788999999999999999988864211 1122222
Q ss_pred hHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHc
Q psy7339 102 TTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYT 157 (223)
Q Consensus 102 ~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~ 157 (223)
.+..+...+ .+|+|+|+ ++++|++||+++|++|++|++++|++++|+.+|++++++
T Consensus 86 ~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~l~lt 165 (260)
T PRK07659 86 TISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQIIWE 165 (260)
T ss_pred HHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHHHHHh
Confidence 333333333 49999997 799999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcCc
Q psy7339 158 GRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGH 215 (223)
Q Consensus 158 g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~ 215 (223)
|+.++|+||+++||||+++ ++++.+++.+++++|+..||.+++.+|+.++......+
T Consensus 166 g~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 222 (260)
T PRK07659 166 GKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKPLKAMIETKQIYCELNRSQL 222 (260)
T ss_pred CCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCH
Confidence 9999999999999999999 78999999999999999999999999999987654443
No 45
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.9e-33 Score=233.84 Aligned_cols=184 Identities=26% Similarity=0.283 Sum_probs=158.4
Q ss_pred cceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh------------
Q psy7339 28 LAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE------------ 94 (223)
Q Consensus 28 ~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~------------ 94 (223)
...++.-++| +..+++++..|..+..|+.||.++++.++.|+++++||++|.|+.||+|.|+.....
T Consensus 5 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 84 (296)
T PRK08260 5 TIRYDVADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVE 84 (296)
T ss_pred eEEEeeeCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccc
Confidence 3456667788 778899999999999999999999999999999999999999999999988754211
Q ss_pred ---------hhhHHHHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccc
Q psy7339 95 ---------RLDHYARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVL 141 (223)
Q Consensus 95 ---------~~~~~~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~ 141 (223)
....+......+...+ .+|+|+|+ ++++|++||+++|++|++|++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~ 164 (296)
T PRK08260 85 ADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASSWF 164 (296)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchhhh
Confidence 0112222222333333 49999997 79999999999999999999999
Q ss_pred hhhhcCHHHHHHHHHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhc-chHHHHHHHHHHHhHH
Q psy7339 142 FPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL-SSCIVSLLAHLMRGIL 211 (223)
Q Consensus 142 l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~-~~~a~~~~K~~l~~~~ 211 (223)
+++++|..+|++++++|++++|+||+++||||+|+|++++++++.+++++|+.. +|.+++.+|+++++..
T Consensus 165 l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~~~~K~~l~~~~ 235 (296)
T PRK08260 165 LPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVSVALTRQMMWRMA 235 (296)
T ss_pred HHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999985 9999999999998753
No 46
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=1.7e-33 Score=230.37 Aligned_cols=183 Identities=15% Similarity=0.176 Sum_probs=155.5
Q ss_pred ceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC-CCcCCCCCCCcchhh---hhHHH-Hh
Q psy7339 29 AEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC-RAGIEPPPSCLPGER---LDHYA-RT 102 (223)
Q Consensus 29 ~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g-~~F~aG~~~~~~~~~---~~~~~-~~ 102 (223)
..++.-++| ...+++|+ .|..+..|+.||.++++.++.++++++||++|.| ++||+|.|+...... ...+. ..
T Consensus 5 i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~ 83 (261)
T PRK03580 5 LHTTRNGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGG 83 (261)
T ss_pred EEEEEECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhh
Confidence 455666788 67888884 5999999999999999999999999999999998 799999887642110 01111 11
Q ss_pred HHHHhhhhhcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCC
Q psy7339 103 TEQVKNRVLLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGR 159 (223)
Q Consensus 103 ~~~~~~~~~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~ 159 (223)
...+.....+|+|+|+ ++++|++||+++|++|++|+++++++++|+.+|++++++|+
T Consensus 84 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~a~~l~l~g~ 163 (261)
T PRK03580 84 FAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGR 163 (261)
T ss_pred hHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHHHHHHHHhCC
Confidence 1222233349999997 79999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHh
Q psy7339 160 KLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILR 212 (223)
Q Consensus 160 ~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~ 212 (223)
+++|+||+++||||+|+|++++.+++.+++++|+..||.+++.+|+.++....
T Consensus 164 ~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~ 216 (261)
T PRK03580 164 RMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIAALKEIYRETSE 216 (261)
T ss_pred ccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999987543
No 47
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-33 Score=232.44 Aligned_cols=186 Identities=18% Similarity=0.212 Sum_probs=157.7
Q ss_pred cceecccc-ce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh-----hh----
Q psy7339 28 LAEFRLAD-HI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE-----RL---- 96 (223)
Q Consensus 28 ~~~~~~~d-~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~-----~~---- 96 (223)
...++.-+ +| +..+++|+..|..+..|+.||.++++.++.|+++++||++|.|+.||+|.|+..... ..
T Consensus 6 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 85 (272)
T PRK06210 6 AVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTD 85 (272)
T ss_pred eEEEEECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCccccccccc
Confidence 45566666 78 778899999999999999999999999999999999999999999999988754211 00
Q ss_pred -hHHH----HhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcC
Q psy7339 97 -DHYA----RTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFG 147 (223)
Q Consensus 97 -~~~~----~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg 147 (223)
..+. ..+..+...+ .+|+|+|+ ++++|++||+++|++|++|+++++++++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig 165 (272)
T PRK06210 86 VRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVG 165 (272)
T ss_pred chhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHhhhC
Confidence 0110 0112222233 49999997 79999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhc-chHHHHHHHHHHHhHHhc
Q psy7339 148 NSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL-SSCIVSLLAHLMRGILRD 213 (223)
Q Consensus 148 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~-~~~a~~~~K~~l~~~~~~ 213 (223)
+.+|++++++|++++|+||+++||||+++|++++++++.+++++|+.. +|.++..+|+.+++....
T Consensus 166 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~a~~~~K~~l~~~~~~ 232 (272)
T PRK06210 166 HANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPASMAVIKRQLYEDAFQ 232 (272)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999999999985 999999999999876443
No 48
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=1.1e-33 Score=229.61 Aligned_cols=185 Identities=18% Similarity=0.221 Sum_probs=163.1
Q ss_pred eccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhh----hhHHHHhHHH
Q psy7339 31 FRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGER----LDHYARTTEQ 105 (223)
Q Consensus 31 ~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~----~~~~~~~~~~ 105 (223)
+++-|+| ...+++++..|..+..++.||.++++.+++|+++++||++|.++.||+|.|+...... ...+.+.+..
T Consensus 2 ~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 81 (245)
T PF00378_consen 2 YEIEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQE 81 (245)
T ss_dssp EEEETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhccccccccccchhhcc
Confidence 4567889 7888888899999999999999999999999999999999999999999888653222 3344444455
Q ss_pred Hhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCCC
Q psy7339 106 VKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKL 161 (223)
Q Consensus 106 ~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~ 161 (223)
+...+ .+|+|+|+ ++++|++||+++|++|++|+++++++++|++.|++++++|+++
T Consensus 82 l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l~g~~~ 161 (245)
T PF00378_consen 82 LLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLLTGEPI 161 (245)
T ss_dssp HHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred ccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeecccccccccccccc
Confidence 54444 39999997 7999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcCc
Q psy7339 162 NAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGH 215 (223)
Q Consensus 162 ~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~ 215 (223)
+|+||+++||||+|+|++++.+++.+++++++..|+.+++.+|+.+++.....+
T Consensus 162 ~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~~~~~~ 215 (245)
T PF00378_consen 162 SAEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALRATKKALNRALEQSL 215 (245)
T ss_dssp EHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSHH
T ss_pred hhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999999999999999999999999998755443
No 49
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=4.7e-33 Score=229.07 Aligned_cols=183 Identities=19% Similarity=0.151 Sum_probs=157.3
Q ss_pred cceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC-CCcCCCCCCCcchh----hhhHHHH
Q psy7339 28 LAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC-RAGIEPPPSCLPGE----RLDHYAR 101 (223)
Q Consensus 28 ~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g-~~F~aG~~~~~~~~----~~~~~~~ 101 (223)
...+..-++| ...+++++..|..+..|+.||.++++.++.|+++++||++|.| +.||+|.|+..... ....+..
T Consensus 14 ~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 93 (273)
T PRK07396 14 DILYKSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPR 93 (273)
T ss_pred ceEEEecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhh
Confidence 4566777888 7788899999999999999999999999999999999999999 69999988764211 0011111
Q ss_pred -hHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHH
Q psy7339 102 -TTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLY 156 (223)
Q Consensus 102 -~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l 156 (223)
....+...+ .+|+|+|+ ++++|++||+++|++|++++++++++++|+.+|+++++
T Consensus 94 ~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~a~~l~l 173 (273)
T PRK07396 94 LNVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKKAREIWF 173 (273)
T ss_pred hHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHHHHHHHH
Confidence 111223233 49999997 79999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhH
Q psy7339 157 TGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGI 210 (223)
Q Consensus 157 ~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~ 210 (223)
+|++++|+||+++||||+|+|++++++++.+++++|+..||.+++.+|+.++..
T Consensus 174 tg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~ 227 (273)
T PRK07396 174 LCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAALNAD 227 (273)
T ss_pred hCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999875
No 50
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.8e-33 Score=228.44 Aligned_cols=181 Identities=14% Similarity=0.156 Sum_probs=153.2
Q ss_pred ceeccc-cce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh-------hhhHH
Q psy7339 29 AEFRLA-DHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE-------RLDHY 99 (223)
Q Consensus 29 ~~~~~~-d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~-------~~~~~ 99 (223)
..+..- ++| ...+++++..|..+..|+.||.++++.++.|+++++||++|.|+.||+|.|+..... .....
T Consensus 6 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 85 (262)
T PRK07468 6 IRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEE 85 (262)
T ss_pred EEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHH
Confidence 445553 478 778999999999999999999999999999999999999999999999988764211 00011
Q ss_pred HHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHH
Q psy7339 100 ARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELL 155 (223)
Q Consensus 100 ~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ 155 (223)
...+..+...+ .+|+|+|+ ++++|++||+++|++|++|+++++ +++|+.+|++|+
T Consensus 86 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~-~~vG~~~a~~ll 164 (262)
T PRK07468 86 ARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVV-ARMGEANARRVF 164 (262)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHH-hhccHHHHHHHH
Confidence 11122233333 49999997 799999999999999999988755 559999999999
Q ss_pred HcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhH
Q psy7339 156 YTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGI 210 (223)
Q Consensus 156 l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~ 210 (223)
++|++++|+||+++||||+|+|++++.+.+.+++++++..||.+++.+|++++..
T Consensus 165 l~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l~~~ 219 (262)
T PRK07468 165 MSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAVAAAKALVRAL 219 (262)
T ss_pred HhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999865
No 51
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=4.5e-33 Score=227.78 Aligned_cols=182 Identities=13% Similarity=0.120 Sum_probs=156.5
Q ss_pred cceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCC--CCCcCCCCCCCcchh---hhhHHHH
Q psy7339 28 LAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDEL--CRAGIEPPPSCLPGE---RLDHYAR 101 (223)
Q Consensus 28 ~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~--g~~F~aG~~~~~~~~---~~~~~~~ 101 (223)
...+..-|+| +..+++|+..|..+..|+.+|.++++.+++++ +++||++|. ++.||+|.|+..... ....+..
T Consensus 5 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~ 83 (261)
T PRK11423 5 YVNVVTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDD 83 (261)
T ss_pred ceEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHH
Confidence 3556667889 67899999999999999999999999999887 999999985 389999988864211 1112223
Q ss_pred hHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHc
Q psy7339 102 TTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYT 157 (223)
Q Consensus 102 ~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~ 157 (223)
.+..+...+ .+|+|+|+ ++++|++||+++|++|++++++++++++|+++|++++++
T Consensus 84 ~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~a~~l~l~ 163 (261)
T PRK11423 84 PLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHIVKEMFFT 163 (261)
T ss_pred HHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHHHHHHHHc
Confidence 333333333 49999997 789999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhH
Q psy7339 158 GRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGI 210 (223)
Q Consensus 158 g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~ 210 (223)
|++++|+||+++||||+|+|++++++.+.+++++|+..||.+++.+|+.++..
T Consensus 164 g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~~~~ 216 (261)
T PRK11423 164 ASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEQLRVL 216 (261)
T ss_pred CCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999864
No 52
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=7.8e-33 Score=226.11 Aligned_cols=185 Identities=19% Similarity=0.198 Sum_probs=158.1
Q ss_pred ceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh---h--hhHHHHh
Q psy7339 29 AEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE---R--LDHYART 102 (223)
Q Consensus 29 ~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~---~--~~~~~~~ 102 (223)
..+...++| +.++++|+..|..+..|+.||.++++.++.|+++++||++|.|++||+|.|+..... . ...+...
T Consensus 7 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~ 86 (257)
T COG1024 7 ILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQP 86 (257)
T ss_pred eEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhH
Confidence 344555557 889999999999999999999999999999999999999999999999999876321 1 1122222
Q ss_pred HHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcC
Q psy7339 103 TEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTG 158 (223)
Q Consensus 103 ~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g 158 (223)
...+...+ .++||+|+ ++++|++||+++|++|++|+++++++++|+.+|+++++||
T Consensus 87 ~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a~~l~ltg 166 (257)
T COG1024 87 GQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTG 166 (257)
T ss_pred HHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHHHHHHHcC
Confidence 22233333 49999997 7999999999999999889999999999999999999999
Q ss_pred CCCCHHHHHHcCccccccCC-hhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcC
Q psy7339 159 RKLNAQEALQYGFVSGVFTT-EEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDG 214 (223)
Q Consensus 159 ~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~ 214 (223)
+.++++||+++||||+++++ +++++.+.+++++++. ||.++..+|+.++......
T Consensus 167 ~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~~~a~~~~k~~~~~~~~~~ 222 (257)
T COG1024 167 EPISAAEALELGLVDEVVPDAEELLERALELARRLAA-PPLALAATKRLVRAALEAD 222 (257)
T ss_pred CcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999986 7999999999999998 9999999999998775443
No 53
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=6.9e-33 Score=228.35 Aligned_cols=187 Identities=13% Similarity=0.080 Sum_probs=156.2
Q ss_pred cceecc-ccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC--CCcCCCCCCCcchh------hhh
Q psy7339 28 LAEFRL-ADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC--RAGIEPPPSCLPGE------RLD 97 (223)
Q Consensus 28 ~~~~~~-~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g--~~F~aG~~~~~~~~------~~~ 97 (223)
...++. -++| ...++++ +.|..+..|+.||.++++.+++|+++++||++|.| ++||+|.|+..... ...
T Consensus 12 ~i~~~~~~~~Va~itlnr~-~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~ 90 (278)
T PLN03214 12 GVRVDRRPGGIAVVWLAKE-PVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYA 90 (278)
T ss_pred ceEEEEcCCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHH
Confidence 455665 4778 5677775 57999999999999999999999999999999987 68999988754211 111
Q ss_pred HHHHhHHHHhhhh-hcccceee-----------------------ecceeecccccccc-CCCCccccchhhhcCHHHHH
Q psy7339 98 HYARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGM-TPEGCSSVLFPRIFGNSVAS 152 (223)
Q Consensus 98 ~~~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl-~p~~g~~~~l~~~vg~~~a~ 152 (223)
.+......+...+ .+|+|+|| ++++|++||+++|+ +|++++++++++++|+.+|+
T Consensus 91 ~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G~~~a~ 170 (278)
T PLN03214 91 EFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVIDRKVAE 170 (278)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcCHHHHH
Confidence 2222222233333 48999997 79999999999999 58889999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcCc
Q psy7339 153 ELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGH 215 (223)
Q Consensus 153 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~ 215 (223)
+++++|++++++||+++||||+|+|++++++.+.+++++|+..||.+++.+|+.+++.....+
T Consensus 171 ~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~l 233 (278)
T PLN03214 171 SLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLPSAARAATKALLREEFSAAW 233 (278)
T ss_pred HHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987655443
No 54
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-32 Score=224.93 Aligned_cols=181 Identities=15% Similarity=0.167 Sum_probs=153.1
Q ss_pred ceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh------hhhHHHH
Q psy7339 29 AEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE------RLDHYAR 101 (223)
Q Consensus 29 ~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~------~~~~~~~ 101 (223)
..+..-++| ...+++|+ .|..+..|+.||.++++.+++|+++++||++|.|+.||+|.|+..... ....+..
T Consensus 6 i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 84 (257)
T PRK06495 6 LKLEVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNR 84 (257)
T ss_pred EEEEeeCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHH
Confidence 455666788 77788886 699999999999999999999999999999999999999988864211 1112222
Q ss_pred hHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHc
Q psy7339 102 TTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYT 157 (223)
Q Consensus 102 ~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~ 157 (223)
....+...+ .+|+|+|+ ++++|++||+++|++ ++++++++++|+.+|++++++
T Consensus 85 ~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a~~lll~ 161 (257)
T PRK06495 85 RTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLTRRMMLT 161 (257)
T ss_pred HHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHHHHHHHc
Confidence 233333333 49999997 799999999999997 456689999999999999999
Q ss_pred CCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhc
Q psy7339 158 GRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRD 213 (223)
Q Consensus 158 g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~ 213 (223)
|++++|+||+++||||+++|++++++++.+++++|+..||.+++.+|+.++.....
T Consensus 162 g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~ 217 (257)
T PRK06495 162 GYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKSPLATRLAKDALNTIENM 217 (257)
T ss_pred CCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999876433
No 55
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-32 Score=223.56 Aligned_cols=177 Identities=14% Similarity=0.113 Sum_probs=148.8
Q ss_pred ccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhh--hhH---HHHhHHHHh
Q psy7339 34 ADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGER--LDH---YARTTEQVK 107 (223)
Q Consensus 34 ~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~--~~~---~~~~~~~~~ 107 (223)
-|+| ...+++++ .|..+..|+.||.++++.++.|+++++||++|.|+.||+|.|+...... ... +.+....+.
T Consensus 9 ~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 87 (249)
T PRK07938 9 EPGIAEVTVDYPP-VNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAF 87 (249)
T ss_pred CCCEEEEEECCCC-cccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHH
Confidence 4678 66778876 5999999999999999999999999999999999999999887542110 011 111222222
Q ss_pred hhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCCCCH
Q psy7339 108 NRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNA 163 (223)
Q Consensus 108 ~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a 163 (223)
..+ .+|||+|+ ++++|++||+++|++ ++++++++++|+.+|++++++|++++|
T Consensus 88 ~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg~~~~a 164 (249)
T PRK07938 88 RAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTAATITA 164 (249)
T ss_pred HHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhCCcCCH
Confidence 333 49999997 799999999999996 456689999999999999999999999
Q ss_pred HHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcC
Q psy7339 164 QEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDG 214 (223)
Q Consensus 164 ~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~ 214 (223)
+||+++||||+|||++++++++.+++++|+..||.+++.+|+.++......
T Consensus 165 ~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~ 215 (249)
T PRK07938 165 AELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIRAAKEALNGIDPQD 215 (249)
T ss_pred HHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999999999998764433
No 56
>PLN02921 naphthoate synthase
Probab=100.00 E-value=1.9e-32 Score=229.53 Aligned_cols=177 Identities=18% Similarity=0.193 Sum_probs=153.4
Q ss_pred cce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC-CCcCCCCCCCcchhh----hhHHHH-hHHHHh
Q psy7339 35 DHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC-RAGIEPPPSCLPGER----LDHYAR-TTEQVK 107 (223)
Q Consensus 35 d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g-~~F~aG~~~~~~~~~----~~~~~~-~~~~~~ 107 (223)
++| ...+++++..|..+..|+.||.++++.+++++++++||++|.| +.||+|.|+...... .+.+.. ....+.
T Consensus 75 ~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~ 154 (327)
T PLN02921 75 EGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQ 154 (327)
T ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHH
Confidence 678 7788999999999999999999999999999999999999999 899999888642110 111111 011122
Q ss_pred hhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCCCCH
Q psy7339 108 NRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNA 163 (223)
Q Consensus 108 ~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a 163 (223)
..+ .+++|+|+ ++++|++||+++|++|++++++++++++|+.+|++++++|++++|
T Consensus 155 ~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~~~A~ellltG~~~~A 234 (327)
T PLN02921 155 IQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQKKAREMWFLARFYTA 234 (327)
T ss_pred HHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHHHHHHHcCCcCCH
Confidence 223 48999997 789999999999999999999999999999999999999999999
Q ss_pred HHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHH
Q psy7339 164 QEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGIL 211 (223)
Q Consensus 164 ~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~ 211 (223)
+||+++||||+|+|++++++++.+++++|+..||.+++.+|++++...
T Consensus 235 ~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~~~K~~l~~~~ 282 (327)
T PLN02921 235 SEALKMGLVNTVVPLDELEGETVKWCREILRNSPTAIRVLKSALNAAD 282 (327)
T ss_pred HHHHHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999998753
No 57
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=2.5e-32 Score=222.12 Aligned_cols=183 Identities=15% Similarity=0.121 Sum_probs=149.5
Q ss_pred ceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcch-hhhhHHHHhHHHH
Q psy7339 29 AEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPG-ERLDHYARTTEQV 106 (223)
Q Consensus 29 ~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~-~~~~~~~~~~~~~ 106 (223)
.+++..++| ...+++|+ .|..+..|+.||.++++.+++++++++||++|.|+.||+|.|+.... .....+......+
T Consensus 3 v~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 81 (251)
T TIGR03189 3 VWLERDGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKL 81 (251)
T ss_pred EEEEeeCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHH
Confidence 345566778 66788886 59999999999999999999999999999999999999999886421 1111222222333
Q ss_pred hhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCCCC
Q psy7339 107 KNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLN 162 (223)
Q Consensus 107 ~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~ 162 (223)
...+ .+|+|+|+ ++++|++||+++|++|+ +++++|++++|+.+|++++++|++++
T Consensus 82 ~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~~~~~l~~~vg~~~a~~l~ltg~~~~ 160 (251)
T TIGR03189 82 VIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAP-AASCLLPERMGRVAAEDLLYSGRSID 160 (251)
T ss_pred HHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCC-chHHHHHHHhCHHHHHHHHHcCCCCC
Confidence 3333 49999997 78999999999999987 45779999999999999999999999
Q ss_pred HHHHHHcCccccccCChhHHHhHHHH-HHHHhhcchHHHHHHHHHHHhHHhcCc
Q psy7339 163 AQEALQYGFVSGVFTTEEIERDLWPR-IHAWAKLSSCIVSLLAHLMRGILRDGH 215 (223)
Q Consensus 163 a~eA~~~Glv~~v~~~~~l~~~a~~~-a~~l~~~~~~a~~~~K~~l~~~~~~~~ 215 (223)
|+||+++||||+|+|+++ +.+.++ +++++..||.+++.+|+.++......+
T Consensus 161 a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~~~~K~~l~~~~~~~~ 212 (251)
T TIGR03189 161 GAEGARIGLANAVAEDPE--NAALAWFDEHPAKLSASSLRFAVRAARLGMNERV 212 (251)
T ss_pred HHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcccH
Confidence 999999999999998654 466666 689999999999999999987654443
No 58
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.3e-32 Score=223.94 Aligned_cols=186 Identities=17% Similarity=0.125 Sum_probs=157.0
Q ss_pred Ccceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh----hhhHH--
Q psy7339 27 SLAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE----RLDHY-- 99 (223)
Q Consensus 27 ~~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~----~~~~~-- 99 (223)
+...++.-++| ...+++|+..|..+..|+.||.++++.++.|+++++||++|.|+.||+|.|+..... ....+
T Consensus 3 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~ 82 (262)
T PRK07509 3 DRVSVTIEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFK 82 (262)
T ss_pred ceEEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhh
Confidence 34556667888 788999999999999999999999999999999999999999999999988753211 11111
Q ss_pred -----HHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHH
Q psy7339 100 -----ARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSV 150 (223)
Q Consensus 100 -----~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 150 (223)
......+...+ .+|+|+|+ ++++|++||+++|++|++|+++++++++|+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~ 162 (262)
T PRK07509 83 RLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVRKDV 162 (262)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhCHHH
Confidence 11122222222 48999997 79999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcC
Q psy7339 151 ASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDG 214 (223)
Q Consensus 151 a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~ 214 (223)
|++++++|++++|+||+++||||++++ ++.+++.+++++++..||.+++.+|+.++......
T Consensus 163 a~~l~ltg~~~~a~eA~~~Glv~~vv~--~~~~~a~~~a~~l~~~~~~~~~~~K~~l~~~~~~~ 224 (262)
T PRK07509 163 ARELTYTARVFSAEEALELGLVTHVSD--DPLAAALALAREIAQRSPDAIAAAKRLINRSWTAS 224 (262)
T ss_pred HHHHHHcCCCcCHHHHHHcCChhhhhc--hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999995 46889999999999999999999999998865443
No 59
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.5e-32 Score=218.72 Aligned_cols=175 Identities=13% Similarity=0.112 Sum_probs=149.0
Q ss_pred eeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhhhhHHHHhHHHHhh
Q psy7339 30 EFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKN 108 (223)
Q Consensus 30 ~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~~~~~~~~~~~~~~ 108 (223)
+++.-++| ...+++|+..|..+..|+.||.++++.++.+ ++++||++|.|+.||+|.|+..... ...+......+..
T Consensus 3 ~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~-~~~~~~~~~~~~~ 80 (243)
T PRK07854 3 GVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY-ADDFPDALIEMLH 80 (243)
T ss_pred eEEEeCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh-HHHHHHHHHHHHH
Confidence 45556788 7789999999999999999999999999864 8999999999999999998863211 1122222233333
Q ss_pred hh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCCCCHH
Q psy7339 109 RV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQ 164 (223)
Q Consensus 109 ~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~ 164 (223)
.+ .+|+|+|+ ++++|++||+++|++|+++++++|++++|+.+|++++++|++++|+
T Consensus 81 ~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ltg~~~~a~ 160 (243)
T PRK07854 81 AIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAE 160 (243)
T ss_pred HHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHHHcCCCcCHH
Confidence 33 48999997 7999999999999999999999999999999999999999999999
Q ss_pred HHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhH
Q psy7339 165 EALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGI 210 (223)
Q Consensus 165 eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~ 210 (223)
||+++||||+|++ + +++.+++++|+..||.+++.+|+.++..
T Consensus 161 eA~~~Glv~~v~~---~-~~a~~~a~~l~~~~~~a~~~~K~~l~~~ 202 (243)
T PRK07854 161 QALATGMANRIGT---L-ADAQAWAAEIAGLAPLALQHAKRVLNDD 202 (243)
T ss_pred HHHHCCCcccccC---H-HHHHHHHHHHHhCCHHHHHHHHHHHHcc
Confidence 9999999999975 2 2789999999999999999999999753
No 60
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1e-31 Score=222.45 Aligned_cols=185 Identities=18% Similarity=0.195 Sum_probs=154.7
Q ss_pred Ccceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcch---h--------
Q psy7339 27 SLAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPG---E-------- 94 (223)
Q Consensus 27 ~~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~---~-------- 94 (223)
+...++.-++| +..+++++..|..+..|+.||.++++.++.|+++++|||+|.|++||+|.|+.... .
T Consensus 4 ~~v~~~~~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~ 83 (288)
T PRK08290 4 EYVRYEVAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQH 83 (288)
T ss_pred ceEEEEeeCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccccc
Confidence 34566777888 77889999999999999999999999999999999999999999999998875321 0
Q ss_pred ------------hhhHHH---HhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCC
Q psy7339 95 ------------RLDHYA---RTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPE 135 (223)
Q Consensus 95 ------------~~~~~~---~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~ 135 (223)
....+. ..+..+...+ .+|+|+|+ ++++|++||+++|++ +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl~-~ 162 (288)
T PRK08290 84 PTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGIP-G 162 (288)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCcC-c
Confidence 000111 1112222233 49999997 799999999999994 4
Q ss_pred CccccchhhhcCHHHHHHHHHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhc
Q psy7339 136 GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRD 213 (223)
Q Consensus 136 ~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~ 213 (223)
.+.+++++++|+++|+++++||+.++|+||+++||||++||++++++++.+++++|+..|+.+++.+|+.++.....
T Consensus 163 -~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~~~~~~~ 239 (288)
T PRK08290 163 -VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLRLTKRAVNQTLDA 239 (288)
T ss_pred -chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999876543
No 61
>PRK08321 naphthoate synthase; Validated
Probab=99.98 E-value=1e-31 Score=223.84 Aligned_cols=177 Identities=16% Similarity=0.149 Sum_probs=151.8
Q ss_pred ccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC-------CCcCCCCCCCcchh-----------
Q psy7339 34 ADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC-------RAGIEPPPSCLPGE----------- 94 (223)
Q Consensus 34 ~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g-------~~F~aG~~~~~~~~----------- 94 (223)
-++| ...+++|+..|..+..|+.||.++++.++.++++++||++|.| +.||+|.|+.....
T Consensus 32 ~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~ 111 (302)
T PRK08321 32 DQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEA 111 (302)
T ss_pred CCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccc
Confidence 5667 7789999999999999999999999999999999999999988 59999988763110
Q ss_pred -hhh--HHHH-hHHHHhhhh-hcccceee------------------------ecceeeccccccccCCCCccccchhhh
Q psy7339 95 -RLD--HYAR-TTEQVKNRV-LLNHPVFV------------------------LQATFHTPFTLRGMTPEGCSSVLFPRI 145 (223)
Q Consensus 95 -~~~--~~~~-~~~~~~~~~-~~~~p~ia------------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~ 145 (223)
... .+.. ....+...+ .+|+|+|| ++++|++||+++|++|+++++++|+++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~~~~~L~r~ 191 (302)
T PRK08321 112 DTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQ 191 (302)
T ss_pred cchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCCchHHHHHHHH
Confidence 000 1111 111222233 38999997 379999999999999999999999999
Q ss_pred cCHHHHHHHHHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhH
Q psy7339 146 FGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGI 210 (223)
Q Consensus 146 vg~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~ 210 (223)
+|+.+|++++++|++++|+||+++||||++||++++++++.+++++|+..||.+++.+|++++..
T Consensus 192 vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~ 256 (302)
T PRK08321 192 VGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMRMLKYAFNLT 256 (302)
T ss_pred hCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999865
No 62
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=99.98 E-value=5.8e-32 Score=219.70 Aligned_cols=181 Identities=12% Similarity=0.052 Sum_probs=152.6
Q ss_pred eccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh-hhhHHHHhHHHHhh
Q psy7339 31 FRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE-RLDHYARTTEQVKN 108 (223)
Q Consensus 31 ~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~-~~~~~~~~~~~~~~ 108 (223)
++..++| ...+++|+..|..+..|+.||.++++.++.|+++++||++|.|+.||+|.|+..... ....+.+.+..+..
T Consensus 4 ~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK06072 4 VESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIR 83 (248)
T ss_pred EEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHH
Confidence 4455778 788899999999999999999999999999999999999999999999998864221 11222222333333
Q ss_pred hh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCCCCHH
Q psy7339 109 RV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQ 164 (223)
Q Consensus 109 ~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~ 164 (223)
.+ .+|+|+|+ ++++|++||+++|++|++|+++++++++|. ++++++++|++++|+
T Consensus 84 ~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~-~a~~lll~g~~~~a~ 162 (248)
T PRK06072 84 EIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQ-RFYEILVLGGEFTAE 162 (248)
T ss_pred HHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhH-HHHHHHHhCCccCHH
Confidence 33 38999997 799999999999999999999999999996 899999999999999
Q ss_pred HHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcCc
Q psy7339 165 EALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGH 215 (223)
Q Consensus 165 eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~ 215 (223)
||+++||||++ +++++++.+++++|+..||.+++.+|+.+++.....+
T Consensus 163 eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l 210 (248)
T PRK06072 163 EAERWGLLKIS---EDPLSDAEEMANRISNGPFQSYIAAKRMINLVLYNDL 210 (248)
T ss_pred HHHHCCCcccc---chHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcCH
Confidence 99999999964 4678999999999999999999999999987654433
No 63
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=99.98 E-value=6.8e-32 Score=216.96 Aligned_cols=188 Identities=11% Similarity=0.052 Sum_probs=155.4
Q ss_pred ceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhh---hhHHHHhHH
Q psy7339 29 AEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGER---LDHYARTTE 104 (223)
Q Consensus 29 ~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~---~~~~~~~~~ 104 (223)
..++.-++| ...++++ ..|..+..|+.||.++++.++ +++++||++|.|+.||+|.|+...... ...+.....
T Consensus 5 i~~~~~~~v~~itln~~-~~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 81 (229)
T PRK06213 5 VSYTLEDGVATITLDDG-KVNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGS 81 (229)
T ss_pred EEEEecCCEEEEEeCCC-CCCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHH
Confidence 455666788 5566665 679999999999999999988 567999999999999999887642211 112222223
Q ss_pred HHhhhh-hcccceee-----------------------ec-ceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCC
Q psy7339 105 QVKNRV-LLNHPVFV-----------------------LQ-ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGR 159 (223)
Q Consensus 105 ~~~~~~-~~~~p~ia-----------------------~~-a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~ 159 (223)
.+...+ .+|+|+|+ ++ ++|++||+++|++|+.++..++++++|+..+++++++|+
T Consensus 82 ~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~a~~lll~g~ 161 (229)
T PRK06213 82 TLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSAFQRAVINAE 161 (229)
T ss_pred HHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHHHHHHHHcCc
Confidence 333333 49999997 66 999999999999988888888999999999999999999
Q ss_pred CCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcCcCccc
Q psy7339 160 KLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGHATTQ 219 (223)
Q Consensus 160 ~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~ 219 (223)
+++|+||+++||||+|+|++++.+.+.+++++++..||.+++.+|+.++....+.++...
T Consensus 162 ~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~l~~~~ 221 (229)
T PRK06213 162 MFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAHAATKLKVRAAALEAIRAAI 221 (229)
T ss_pred ccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhch
Confidence 999999999999999999999999999999999999999999999999987665554443
No 64
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=99.98 E-value=1.2e-31 Score=223.67 Aligned_cols=183 Identities=14% Similarity=0.124 Sum_probs=152.4
Q ss_pred cceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhh-----------
Q psy7339 28 LAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGER----------- 95 (223)
Q Consensus 28 ~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~----------- 95 (223)
...++.-++| ...+++++..|..+..|+.||.++++.++.|+++++||++|.|++||+|.|+......
T Consensus 11 ~v~~e~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~ 90 (302)
T PRK08272 11 TMTYEVTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYP 90 (302)
T ss_pred eEEEEeECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhcccccccccccc
Confidence 3556677888 7889999999999999999999999999999999999999999999999887542110
Q ss_pred -------------hh-----HHHHhHHH-Hhhhhhcccceee-----------------------ecceeeccccccccC
Q psy7339 96 -------------LD-----HYARTTEQ-VKNRVLLNHPVFV-----------------------LQATFHTPFTLRGMT 133 (223)
Q Consensus 96 -------------~~-----~~~~~~~~-~~~~~~~~~p~ia-----------------------~~a~f~~pe~~~Gl~ 133 (223)
.. .+...... +.....++||+|+ ++++|++||+++|.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~gg~ 170 (302)
T PRK08272 91 GKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGV 170 (302)
T ss_pred cccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhcccC
Confidence 00 01111122 2222349999997 789999999998666
Q ss_pred CCCccccchhhhcCHHHHHHHHHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhc
Q psy7339 134 PEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRD 213 (223)
Q Consensus 134 p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~ 213 (223)
|+. .++++++|+++|++++++|++++|+||+++||||+++|++++++++.++|++|+..||.+++.+|+.++.....
T Consensus 171 ~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~~~K~~l~~~~~~ 247 (302)
T PRK08272 171 PAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLAMVKLAVNSALLQ 247 (302)
T ss_pred ChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 643 36788999999999999999999999999999999999999999999999999999999999999999887553
No 65
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=99.98 E-value=1.4e-31 Score=222.47 Aligned_cols=180 Identities=12% Similarity=0.050 Sum_probs=149.7
Q ss_pred ceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCc-chh------------
Q psy7339 29 AEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCL-PGE------------ 94 (223)
Q Consensus 29 ~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~-~~~------------ 94 (223)
..+..-|+| ...+++|+..|..+..|+.||.++++.++.|+++++|||+|.|++||+|.|+.. ...
T Consensus 7 v~~~~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 86 (298)
T PRK12478 7 LLYTTAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWD 86 (298)
T ss_pred EEEeccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccccC
Confidence 456667889 778999999999999999999999999999999999999999999999988863 100
Q ss_pred hhhHHH----Hh---HHHHhhhhhcccceee-----------------------ecceeecccccc-ccCCCCccccchh
Q psy7339 95 RLDHYA----RT---TEQVKNRVLLNHPVFV-----------------------LQATFHTPFTLR-GMTPEGCSSVLFP 143 (223)
Q Consensus 95 ~~~~~~----~~---~~~~~~~~~~~~p~ia-----------------------~~a~f~~pe~~~-Gl~p~~g~~~~l~ 143 (223)
....+. .. ...+.....++||+|+ ++++|++||+++ |+++ ++.+ .
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~~~--~ 162 (298)
T PRK12478 87 PGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TGMW--L 162 (298)
T ss_pred chhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hhHH--H
Confidence 001110 00 1122222349999997 799999999997 8875 2232 3
Q ss_pred hhcCHHHHHHHHHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHh
Q psy7339 144 RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILR 212 (223)
Q Consensus 144 ~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~ 212 (223)
+++|..+|++++++|++++|+||+++||||+|||++++++++.+++++|+..||.+++.+|+.++....
T Consensus 163 ~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~ 231 (298)
T PRK12478 163 YRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQAQKLIVNQAYE 231 (298)
T ss_pred HHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 569999999999999999999999999999999999999999999999999999999999999987655
No 66
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=99.98 E-value=9.8e-32 Score=227.16 Aligned_cols=185 Identities=11% Similarity=0.080 Sum_probs=156.2
Q ss_pred cceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC-CCcCCCCCCCcchh-------h-hh
Q psy7339 28 LAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC-RAGIEPPPSCLPGE-------R-LD 97 (223)
Q Consensus 28 ~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g-~~F~aG~~~~~~~~-------~-~~ 97 (223)
...++..++| +..+++|+..|..+..|+.+|.++++.++.|+++++||++|.| +.||+|.|+..... . ..
T Consensus 4 ~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~ 83 (342)
T PRK05617 4 EVLAEVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAAD 83 (342)
T ss_pred eEEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHH
Confidence 3456677888 7789999999999999999999999999999999999999999 99999988754211 0 10
Q ss_pred HHHHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHH
Q psy7339 98 HYARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASE 153 (223)
Q Consensus 98 ~~~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~ 153 (223)
.+......+...+ .+++|+|+ ++++|++||+++|++|++|++++|+++.| .+|++
T Consensus 84 ~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g-~~a~~ 162 (342)
T PRK05617 84 RFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPG-ALGTY 162 (342)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhccc-HHHHH
Confidence 1111112233333 49999997 79999999999999999999999999877 78999
Q ss_pred HHHcCCCCCHHHHHHcCccccccCChhHHHh-------------------------------------------------
Q psy7339 154 LLYTGRKLNAQEALQYGFVSGVFTTEEIERD------------------------------------------------- 184 (223)
Q Consensus 154 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~------------------------------------------------- 184 (223)
++++|++++|+||+++||||+++|++++++.
T Consensus 163 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 242 (342)
T PRK05617 163 LALTGARISAADALYAGLADHFVPSADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDECFAGDTVE 242 (342)
T ss_pred HHHcCCCCCHHHHHHcCCcceecCHHHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHHhCCCCHH
Confidence 9999999999999999999999999988876
Q ss_pred -------------HHHHHHHHhhcchHHHHHHHHHHHhHHhc
Q psy7339 185 -------------LWPRIHAWAKLSSCIVSLLAHLMRGILRD 213 (223)
Q Consensus 185 -------------a~~~a~~l~~~~~~a~~~~K~~l~~~~~~ 213 (223)
+.+++++|++.||.+++.+|+++++....
T Consensus 243 ~~~~~l~~~~~~~a~~~a~~i~~~sp~a~~~~k~~l~~~~~~ 284 (342)
T PRK05617 243 DIIAALEADGGEFAAKTADTLRSRSPTSLKVTLEQLRRARGL 284 (342)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhCCcHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999876443
No 67
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=99.98 E-value=1.6e-31 Score=218.64 Aligned_cols=185 Identities=15% Similarity=0.149 Sum_probs=155.5
Q ss_pred cceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh-------hhhHH
Q psy7339 28 LAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE-------RLDHY 99 (223)
Q Consensus 28 ~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~-------~~~~~ 99 (223)
...++.-++| ...+++++..|..+..|+.||.++++.++.|+++++||++|.|+.||+|.|+..... ....+
T Consensus 7 ~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 86 (260)
T PRK07827 7 LVRYAVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVAR 86 (260)
T ss_pred ceEEEeeCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHH
Confidence 3456677888 678999999999999999999999999999999999999999999999988764211 11122
Q ss_pred HHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHH
Q psy7339 100 ARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELL 155 (223)
Q Consensus 100 ~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ 155 (223)
...+..+...+ .+|+|+|+ ++++|++||+++|++|++|++++++++. ..+|++++
T Consensus 87 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~-~~~a~~l~ 165 (260)
T PRK07827 87 AREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLS-PRAAARYY 165 (260)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhh-HHHHHHHH
Confidence 22233333333 49999997 7999999999999999999999999865 56899999
Q ss_pred HcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcCc
Q psy7339 156 YTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGH 215 (223)
Q Consensus 156 l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~ 215 (223)
++|++++|+||+++||||++++ ++++++.+++++++..||.+++.+|+.+++.....+
T Consensus 166 l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~~~a~~~~K~~l~~~~~~~~ 223 (260)
T PRK07827 166 LTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGSPQGLAESKALTTAAVLAGF 223 (260)
T ss_pred HhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcCCH
Confidence 9999999999999999999974 689999999999999999999999999987654433
No 68
>PRK08788 enoyl-CoA hydratase; Validated
Probab=99.98 E-value=1.1e-31 Score=221.27 Aligned_cols=179 Identities=13% Similarity=0.082 Sum_probs=145.2
Q ss_pred eecccccee-eecccccccccccchHHHHHHHHHHHHHh-----cCCCeEEEEcCC-CCCcCCCCCCCcchh-----hhh
Q psy7339 30 EFRLADHIY-TRIGFNDSIECNASTFALEMKEIAHIIQF-----LTPRSLILVDEL-CRAGIEPPPSCLPGE-----RLD 97 (223)
Q Consensus 30 ~~~~~d~I~-~~~~~~~~~~~~~s~~~~el~~~~~~l~~-----~~~~~vvvl~~~-g~~F~aG~~~~~~~~-----~~~ 97 (223)
.++.-++|. ..+ +++..|..+..|+.||.++++.+++ ++++++||++|. |+.||+|.|+..... ..+
T Consensus 20 ~~e~~~~ia~itl-~p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~ 98 (287)
T PRK08788 20 YYEEERNVMWMYM-RAQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRD 98 (287)
T ss_pred EEEccCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchH
Confidence 345567884 444 5888999999999999999999998 888999999998 799999988753211 011
Q ss_pred ---HH-HHhHH---HHhhhhhcccceee-----------------------ecceeeccccccccCCCCccccchhhhcC
Q psy7339 98 ---HY-ARTTE---QVKNRVLLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFG 147 (223)
Q Consensus 98 ---~~-~~~~~---~~~~~~~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg 147 (223)
.+ ..... .+...+.+|+|+|+ ++++|++||+++|++|++|+++++++++|
T Consensus 99 ~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~~~vG 178 (287)
T PRK08788 99 ALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLARRVG 178 (287)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHHHHhh
Confidence 11 11111 12212258999997 78999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhH
Q psy7339 148 NSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGI 210 (223)
Q Consensus 148 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~ 210 (223)
+.+|++++++|+.++|+||++|||||+++|++++.+++.+++++|+.. |.+...+|+..+..
T Consensus 179 ~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~-~~~~~a~k~~~~~~ 240 (287)
T PRK08788 179 PKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRK-LNGWRAMLRARRRV 240 (287)
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcC-ccHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999976 65666666655543
No 69
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.97 E-value=7.8e-31 Score=224.27 Aligned_cols=182 Identities=13% Similarity=0.096 Sum_probs=154.7
Q ss_pred Ccceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh--------hhh
Q psy7339 27 SLAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE--------RLD 97 (223)
Q Consensus 27 ~~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~--------~~~ 97 (223)
+...++..++| +..+|+|+..|+.+..|+.+|.++++.++.|+++++||++|.|++||+|.|+..... ...
T Consensus 37 ~~V~~e~~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~ 116 (401)
T PLN02157 37 YQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIR 116 (401)
T ss_pred CceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHH
Confidence 35666777888 778999999999999999999999999999999999999999999999998753211 011
Q ss_pred HHHHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHH
Q psy7339 98 HYARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASE 153 (223)
Q Consensus 98 ~~~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~ 153 (223)
.+......+...+ .+|||+|| ++++|++||+++|++|++|++++|++++|. .+++
T Consensus 117 ~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~-~a~~ 195 (401)
T PLN02157 117 EFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGR-LGEY 195 (401)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhH-HHHH
Confidence 1221111122223 49999997 799999999999999999999999999996 7999
Q ss_pred HHHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhH
Q psy7339 154 LLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGI 210 (223)
Q Consensus 154 l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~ 210 (223)
|++||++++|+||+++||||++||++++ +.+.+++++++..+|.+++.+|+.++..
T Consensus 196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l-~~~~~~~~~i~~~~p~av~~~k~~~~~~ 251 (401)
T PLN02157 196 LGLTGLKLSGAEMLACGLATHYIRSEEI-PVMEEQLKKLLTDDPSVVESCLEKCAEV 251 (401)
T ss_pred HHHcCCcCCHHHHHHcCCceEEeCHhHH-HHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999998 6788999999999999999999998754
No 70
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.97 E-value=7e-31 Score=224.50 Aligned_cols=184 Identities=13% Similarity=0.096 Sum_probs=152.8
Q ss_pred cceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhh-------hhHH
Q psy7339 28 LAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGER-------LDHY 99 (223)
Q Consensus 28 ~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~-------~~~~ 99 (223)
...+..-++| +..+++++..|..+..|+.+|.++++.++.|+++++||++|.|++||+|.|+...... ...+
T Consensus 12 ~v~~~~~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~ 91 (379)
T PLN02874 12 VVLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVV 91 (379)
T ss_pred ceEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHH
Confidence 4556667888 7789999999999999999999999999999999999999999999999887642110 1111
Q ss_pred HHhHHHHhhhhhcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHH
Q psy7339 100 ARTTEQVKNRVLLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLY 156 (223)
Q Consensus 100 ~~~~~~~~~~~~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l 156 (223)
......+.....+++|+|+ ++++|++||+++|++|++|+++++++++|. .+++|++
T Consensus 92 ~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~-~a~~l~l 170 (379)
T PLN02874 92 YRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGH-LGEYLAL 170 (379)
T ss_pred HHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHH-HHHHHHH
Confidence 1111112222248999997 799999999999999999999999999885 8999999
Q ss_pred cCCCCCHHHHHHcCccccccCChhHHH---h-------------------------------------------------
Q psy7339 157 TGRKLNAQEALQYGFVSGVFTTEEIER---D------------------------------------------------- 184 (223)
Q Consensus 157 ~g~~~~a~eA~~~Glv~~v~~~~~l~~---~------------------------------------------------- 184 (223)
||++++|+||+++||||++||++++++ +
T Consensus 171 tG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~ei 250 (379)
T PLN02874 171 TGARLNGKEMVACGLATHFVPSEKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINECFSKDTVEEI 250 (379)
T ss_pred cCCcccHHHHHHcCCccEEeCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHhCCCCHHHH
Confidence 999999999999999999999888765 2
Q ss_pred ---------------HHHHHHHHhhcchHHHHHHHHHHHhHHh
Q psy7339 185 ---------------LWPRIHAWAKLSSCIVSLLAHLMRGILR 212 (223)
Q Consensus 185 ---------------a~~~a~~l~~~~~~a~~~~K~~l~~~~~ 212 (223)
+.+++++|++.||.+++.+|+++++...
T Consensus 251 i~al~~~~~~~~~~~A~~~a~~l~~~sP~al~~tk~~~~~~~~ 293 (379)
T PLN02874 251 IKAFESEASKTGNEWIKETLKGLRRSSPTGLKITLRSIREGRK 293 (379)
T ss_pred HHHHhhcccccccHHHHHHHHHHHhcChHHHHHHHHHHHHhcc
Confidence 3478999999999999999999987543
No 71
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.97 E-value=2e-30 Score=216.17 Aligned_cols=186 Identities=13% Similarity=0.063 Sum_probs=157.4
Q ss_pred cCCcceecccccee---eecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC-CCcCCCCCCCcchh------
Q psy7339 25 PASLAEFRLADHIY---TRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC-RAGIEPPPSCLPGE------ 94 (223)
Q Consensus 25 pa~~~~~~~~d~I~---~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g-~~F~aG~~~~~~~~------ 94 (223)
|++...-++..+++ ..+++|+..|..+..|+.+|.++++.++.|+++++|||+|.| +.||+|.|+....+
T Consensus 24 ~~~~~~~~~~~~~~~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~ 103 (360)
T TIGR03200 24 PAKRPDGNVVPGLYNAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNP 103 (360)
T ss_pred CCCCCCCCccCceEEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccCh
Confidence 56666667777774 478999999999999999999999999999999999999999 79999988753211
Q ss_pred -hhhHHHHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHH
Q psy7339 95 -RLDHYARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNS 149 (223)
Q Consensus 95 -~~~~~~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~ 149 (223)
....+.+....+...+ .+++|+|+ ++++|++||+++|++|++|++++|++++|..
T Consensus 104 ~~~~~~~~~~~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~ 183 (360)
T TIGR03200 104 QEYRQYMRLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCE 183 (360)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHH
Confidence 1112222233333334 39999997 7899999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHcCccccccCChhH------------HHhHHHHHHHHhhcchH--HHHHHHHHHHhH
Q psy7339 150 VASELLYTGRKLNAQEALQYGFVSGVFTTEEI------------ERDLWPRIHAWAKLSSC--IVSLLAHLMRGI 210 (223)
Q Consensus 150 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l------------~~~a~~~a~~l~~~~~~--a~~~~K~~l~~~ 210 (223)
+|++++++|++++|+||+++||||+|+|++++ ++.+.++++.+...++. +.++.|.+++..
T Consensus 184 rA~~llltGe~~sA~EA~~~GLVd~VVp~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 258 (360)
T TIGR03200 184 QAMVSGTLCEPWSAHKAKRLGIIMDVVPALKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQG 258 (360)
T ss_pred HHHHHHHhCCcCcHHHHHHcCChheecCchhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhcc
Confidence 99999999999999999999999999999998 88888899999888877 899999998873
No 72
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=99.97 E-value=5.9e-30 Score=206.65 Aligned_cols=183 Identities=11% Similarity=0.069 Sum_probs=147.0
Q ss_pred eccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCC-eEEEEcCCCCCcCCCCCCCcchh------hhhHHHHh
Q psy7339 31 FRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPR-SLILVDELCRAGIEPPPSCLPGE------RLDHYART 102 (223)
Q Consensus 31 ~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~-~vvvl~~~g~~F~aG~~~~~~~~------~~~~~~~~ 102 (223)
++.-++| +..+++++. |..+..|+.||.++++.++.++++ ++||++|.|+.||+|.|+..... ....+...
T Consensus 4 ~~~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~ 82 (239)
T PLN02267 4 LEKRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAK 82 (239)
T ss_pred eEecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHH
Confidence 4455778 667777764 889999999999999999998885 58888999999999998764211 11112222
Q ss_pred HHHHhhhh-hcccceee------------------------ecceeeccccccccCCCCccccchhhhcCHHHH-HHHHH
Q psy7339 103 TEQVKNRV-LLNHPVFV------------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVA-SELLY 156 (223)
Q Consensus 103 ~~~~~~~~-~~~~p~ia------------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a-~~l~l 156 (223)
+..+...+ .+|+|+|+ ++++|++||+++|++++.++++++++++|..++ +++++
T Consensus 83 ~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~~lll 162 (239)
T PLN02267 83 LRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLL 162 (239)
T ss_pred HHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHHHHHH
Confidence 33333333 49999997 357999999999997545567899999999999 69999
Q ss_pred cCCCCCHHHHHHcCccccccCC-hhHHHhHHHHHHHHhhc--chHHHHHHHHHHHhHHhcC
Q psy7339 157 TGRKLNAQEALQYGFVSGVFTT-EEIERDLWPRIHAWAKL--SSCIVSLLAHLMRGILRDG 214 (223)
Q Consensus 157 ~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a~~l~~~--~~~a~~~~K~~l~~~~~~~ 214 (223)
+|++++|+||+++||||+++|+ +++++++.++|++|+.. ++.++..+|+.+++.....
T Consensus 163 tG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~~~~~~~~~k~~~~~~~~~~ 223 (239)
T PLN02267 163 RAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKWNGEVYASIRKSLLPEVCGK 223 (239)
T ss_pred cCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999985 68999999999999987 5679999999998876443
No 73
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=99.97 E-value=6.3e-30 Score=208.60 Aligned_cols=178 Identities=12% Similarity=0.098 Sum_probs=147.5
Q ss_pred cceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhh-----h-hHHH
Q psy7339 28 LAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGER-----L-DHYA 100 (223)
Q Consensus 28 ~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~-----~-~~~~ 100 (223)
...++.-++| ...+++++..|..+..|+.||.++++.++ +++++||++|.|+.||+|.|+...... . ....
T Consensus 5 ~i~~~~~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK07112 5 TIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDA 82 (255)
T ss_pred eEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhH
Confidence 4566677788 67889999999999999999999999998 469999999999999999888642110 0 1111
Q ss_pred HhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHH
Q psy7339 101 RTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLY 156 (223)
Q Consensus 101 ~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l 156 (223)
.....+...+ .+|+|+|+ ++++|++||+++|++|+++ ..++++++|+.+|+++++
T Consensus 83 ~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~~l~l 161 (255)
T PRK07112 83 EPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAHYMTL 161 (255)
T ss_pred HHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHHHHHHH
Confidence 2222333333 49999997 7999999999999999765 568999999999999999
Q ss_pred cCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhH
Q psy7339 157 TGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGI 210 (223)
Q Consensus 157 ~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~ 210 (223)
+|++++|+||+++||||+++|+++. .+.+++++++..||.+++.+|+.++..
T Consensus 162 ~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~a~~~~K~~~~~~ 213 (255)
T PRK07112 162 MTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLNKAAVARYKSYASTL 213 (255)
T ss_pred hCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999997653 578899999999999999999999864
No 74
>KOG1681|consensus
Probab=99.97 E-value=1.7e-30 Score=199.98 Aligned_cols=183 Identities=19% Similarity=0.160 Sum_probs=157.0
Q ss_pred cccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcch----------------hh
Q psy7339 33 LADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPG----------------ER 95 (223)
Q Consensus 33 ~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~----------------~~ 95 (223)
.-+.+ .+.+|+|...|..+-.|+.|+.++++.+..|+++|+||++|.|+.||+|-|+.... ..
T Consensus 28 ~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~~~~~~~dd~aR~g~~ 107 (292)
T KOG1681|consen 28 AQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDRILQPEGDDVARKGRS 107 (292)
T ss_pred CCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhhccccccchHhhhhHH
Confidence 34456 88999999999999999999999999999999999999999999999997753311 11
Q ss_pred hhHHHHhHHHHhhhhh-cccceee-----------------------ecceeeccccccccCCCCccccchhhhcC-HHH
Q psy7339 96 LDHYARTTEQVKNRVL-LNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFG-NSV 150 (223)
Q Consensus 96 ~~~~~~~~~~~~~~~~-~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg-~~~ 150 (223)
++.+...++.....+. ||||+|+ +++.|..-|+.+|+..+.|...|||..|| ..+
T Consensus 108 lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADvGTL~RlpkvVGn~s~ 187 (292)
T KOG1681|consen 108 LRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADVGTLNRLPKVVGNQSL 187 (292)
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhchhhHhhhhHHhcchHH
Confidence 2223333333333333 9999996 79999999999999999999999999999 799
Q ss_pred HHHHHHcCCCCCHHHHHHcCccccccCC-hhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcCc
Q psy7339 151 ASELLYTGRKLNAQEALQYGFVSGVFTT-EEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGH 215 (223)
Q Consensus 151 a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~ 215 (223)
++++.+|+++|+|.||++.|||++|+|+ +++++.+..+|+.|+.++|.+++.+|..++...+-..
T Consensus 188 ~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVqgTK~~L~ysrehsv 253 (292)
T KOG1681|consen 188 ARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQGTKENLLYSREHSV 253 (292)
T ss_pred HHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeeechHHHHHHHhhhhh
Confidence 9999999999999999999999999986 7899999999999999999999999999987654433
No 75
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.97 E-value=1.9e-29 Score=223.48 Aligned_cols=186 Identities=12% Similarity=0.072 Sum_probs=153.3
Q ss_pred ccccce-eeeccccccc-------------ccccchHHHHHHHHHHHHHh-cCCCeEEEEcCCC-CCcCCCCCCCcch--
Q psy7339 32 RLADHI-YTRIGFNDSI-------------ECNASTFALEMKEIAHIIQF-LTPRSLILVDELC-RAGIEPPPSCLPG-- 93 (223)
Q Consensus 32 ~~~d~I-~~~~~~~~~~-------------~~~~s~~~~el~~~~~~l~~-~~~~~vvvl~~~g-~~F~aG~~~~~~~-- 93 (223)
..-++| ...+++|+.. |..+..|+.||.++++.++. ++++++||++|.| ++||+|.|+....
T Consensus 267 ~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~ 346 (550)
T PRK08184 267 DRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHK 346 (550)
T ss_pred EccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhccc
Confidence 334678 7778999887 57899999999999999996 7899999999999 5999999964321
Q ss_pred h--hhhHHHHhHHHHhhhh-hcccceee--------------------------------ecceeeccccccccCCCCcc
Q psy7339 94 E--RLDHYARTTEQVKNRV-LLNHPVFV--------------------------------LQATFHTPFTLRGMTPEGCS 138 (223)
Q Consensus 94 ~--~~~~~~~~~~~~~~~~-~~~~p~ia--------------------------------~~a~f~~pe~~~Gl~p~~g~ 138 (223)
. ....+....+.+...+ .+++|+|| ++++|++||+++|++|++|+
T Consensus 347 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg 426 (550)
T PRK08184 347 DHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITLSALNFGLYPMVNG 426 (550)
T ss_pred chHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEECccccccCCCCCCc
Confidence 1 0111222222233333 38888886 46899999999999999999
Q ss_pred ccchhhh-cCHHHHHHH--HHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcCc
Q psy7339 139 SVLFPRI-FGNSVASEL--LYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGH 215 (223)
Q Consensus 139 ~~~l~~~-vg~~~a~~l--~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~ 215 (223)
+++|+++ +|+.+|+++ +++|++++|+||+++||||+|+|++++++++.+++++++..||.+++.+|+.++......+
T Consensus 427 ~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~~~K~~l~~~~~~~~ 506 (550)
T PRK08184 427 LSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLSPDALTGMEANLRFAGPETM 506 (550)
T ss_pred HHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Confidence 9999998 699999997 5899999999999999999999999999999999999999999999999999988755444
Q ss_pred Cc
Q psy7339 216 AT 217 (223)
Q Consensus 216 ~~ 217 (223)
+.
T Consensus 507 ~~ 508 (550)
T PRK08184 507 ET 508 (550)
T ss_pred HH
Confidence 43
No 76
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.96 E-value=2.7e-29 Score=221.88 Aligned_cols=185 Identities=12% Similarity=0.054 Sum_probs=153.2
Q ss_pred ccccce-eeeccccccc-------------ccccchHHHHHHHHHHHHHh-cCCCeEEEEcCCCCC-cCCCCCCCcch--
Q psy7339 32 RLADHI-YTRIGFNDSI-------------ECNASTFALEMKEIAHIIQF-LTPRSLILVDELCRA-GIEPPPSCLPG-- 93 (223)
Q Consensus 32 ~~~d~I-~~~~~~~~~~-------------~~~~s~~~~el~~~~~~l~~-~~~~~vvvl~~~g~~-F~aG~~~~~~~-- 93 (223)
...++| ...+++|+.. |..+..|+.||.++++.++. ++++++||++|.|+. ||+|.|+....
T Consensus 263 ~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~ 342 (546)
T TIGR03222 263 DRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHK 342 (546)
T ss_pred eccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccc
Confidence 335677 7788999988 88999999999999999985 589999999999987 99999985311
Q ss_pred h--hhhHHHHhHHHHhhhh-hcccceee--------------------------------ecceeeccccccccCCCCcc
Q psy7339 94 E--RLDHYARTTEQVKNRV-LLNHPVFV--------------------------------LQATFHTPFTLRGMTPEGCS 138 (223)
Q Consensus 94 ~--~~~~~~~~~~~~~~~~-~~~~p~ia--------------------------------~~a~f~~pe~~~Gl~p~~g~ 138 (223)
. .........+.+...+ .+++|+|| ++++|++||+++|++|++|+
T Consensus 343 ~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg 422 (546)
T TIGR03222 343 DHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNFGLYPMVNG 422 (546)
T ss_pred cchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCccccccCCCcCc
Confidence 1 0111111122222333 37888885 56899999999999999999
Q ss_pred ccchhhhc-CHHHH--HHHHHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcCc
Q psy7339 139 SVLFPRIF-GNSVA--SELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGH 215 (223)
Q Consensus 139 ~~~l~~~v-g~~~a--~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~ 215 (223)
+++|++++ |..++ ++++++|++++|+||+++|||++|+|++++++++.+++++|+..||.+++.+|+.++......+
T Consensus 423 ~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l~~~~~~~~ 502 (546)
T TIGR03222 423 LSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFSPDALTGLEANLRFAGPETM 502 (546)
T ss_pred HHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhhcCCcCh
Confidence 99999998 99988 5599999999999999999999999999999999999999999999999999999987655444
Q ss_pred C
Q psy7339 216 A 216 (223)
Q Consensus 216 ~ 216 (223)
+
T Consensus 503 ~ 503 (546)
T TIGR03222 503 E 503 (546)
T ss_pred h
Confidence 4
No 77
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.96 E-value=7.1e-29 Score=227.40 Aligned_cols=168 Identities=19% Similarity=0.173 Sum_probs=144.2
Q ss_pred cceec-cccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh-------hhhH
Q psy7339 28 LAEFR-LADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE-------RLDH 98 (223)
Q Consensus 28 ~~~~~-~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~-------~~~~ 98 (223)
...++ .-|+| ...+++++..|..+..|+.||.++++.++.|+++++|||+|.|++||+|.|+..... ....
T Consensus 7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 86 (715)
T PRK11730 7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQ 86 (715)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHH
Confidence 34455 35778 678899999999999999999999999999999999999999999999988854211 1122
Q ss_pred HHHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHH
Q psy7339 99 YARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASEL 154 (223)
Q Consensus 99 ~~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l 154 (223)
+.+....+...+ .+|+|+|+ ++++|++||+++|++|++|++++|++++|..+|+++
T Consensus 87 ~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~l 166 (715)
T PRK11730 87 WLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALEW 166 (715)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHHH
Confidence 333333333334 39999997 799999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhc
Q psy7339 155 LYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL 195 (223)
Q Consensus 155 ~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~ 195 (223)
+++|++++|+||+++||||+|+|++++++++.+++++++..
T Consensus 167 lltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~ 207 (715)
T PRK11730 167 IAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAG 207 (715)
T ss_pred HHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999965
No 78
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=99.96 E-value=6.8e-29 Score=211.64 Aligned_cols=179 Identities=10% Similarity=0.048 Sum_probs=150.3
Q ss_pred ceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhh---------hhH
Q psy7339 29 AEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGER---------LDH 98 (223)
Q Consensus 29 ~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~---------~~~ 98 (223)
..+...++| ...+++++..|..+..|+.+|.++++.++.|+++++||++|.|++||+|.|+...... ...
T Consensus 11 v~~~~~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~ 90 (381)
T PLN02988 11 VLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANF 90 (381)
T ss_pred eEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHH
Confidence 445566788 7789999999999999999999999999999999999999999999999888642110 011
Q ss_pred HHHhHHHHhhhhhcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHH
Q psy7339 99 YARTTEQVKNRVLLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELL 155 (223)
Q Consensus 99 ~~~~~~~~~~~~~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ 155 (223)
+.+.+........+|||+|+ ++++|++||+++|++|+.|++++|++++|. .+++++
T Consensus 91 f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~-~~~~l~ 169 (381)
T PLN02988 91 FSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGF-FGEYVG 169 (381)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHH-HHHHHH
Confidence 22212211222249999997 899999999999999999999999999997 689999
Q ss_pred HcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHh
Q psy7339 156 YTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRG 209 (223)
Q Consensus 156 l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~ 209 (223)
+||++++|+||+++||||++||++++.+.+.+++ +++..+|.++..+|+.++.
T Consensus 170 LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la-~~~~~~p~~~~~~~~~~~~ 222 (381)
T PLN02988 170 LTGARLDGAEMLACGLATHFVPSTRLTALEADLC-RIGSNDPTFASTILDAYTQ 222 (381)
T ss_pred HcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHH-HhhccCHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999988 7888888888888887764
No 79
>KOG1679|consensus
Probab=99.96 E-value=1.3e-28 Score=188.17 Aligned_cols=181 Identities=16% Similarity=0.179 Sum_probs=157.2
Q ss_pred cce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC-CCcCCCCCCCc----chhhhhHHHHhHHHHhh
Q psy7339 35 DHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC-RAGIEPPPSCL----PGERLDHYARTTEQVKN 108 (223)
Q Consensus 35 d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g-~~F~aG~~~~~----~~~~~~~~~~~~~~~~~ 108 (223)
.+| ...+|++-..|+..--|++++.++++.+..|+.+|+|++.+.. ..||+|.|+.. ..+....|....+.+..
T Consensus 39 ~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~ 118 (291)
T KOG1679|consen 39 EGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFN 118 (291)
T ss_pred CCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHH
Confidence 356 7778999999999999999999999999999999999998776 66999999865 33444455555555555
Q ss_pred hhh-cccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCCCCHH
Q psy7339 109 RVL-LNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQ 164 (223)
Q Consensus 109 ~~~-~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~ 164 (223)
.+. +|.|+|| ++++||++|++++++|+.|++++|+|.+|...|+|+++|++.+++.
T Consensus 119 dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg~alaKELIftarvl~g~ 198 (291)
T KOG1679|consen 119 DIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVGVALAKELIFTARVLNGA 198 (291)
T ss_pred HHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHhHHHHHhHhhhheeccch
Confidence 454 8999997 7999999999999999999999999999999999999999999999
Q ss_pred HHHHcCccccccCCh----hHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcCc
Q psy7339 165 EALQYGFVSGVFTTE----EIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGH 215 (223)
Q Consensus 165 eA~~~Glv~~v~~~~----~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~ 215 (223)
||...||||++|... ...+.+.++|++|....|.+++..|..++....-++
T Consensus 199 eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~gPiavr~aKlAIn~G~evdi 253 (291)
T KOG1679|consen 199 EAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQGPIAVRLAKLAINLGMEVDI 253 (291)
T ss_pred hHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCCchhhhHHHHHhccCceecc
Confidence 999999999999764 678889999999999999999999999987654443
No 80
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.96 E-value=3.7e-28 Score=222.68 Aligned_cols=188 Identities=18% Similarity=0.200 Sum_probs=153.3
Q ss_pred cceecc-ccce-eeecccc-cccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC-CCcCCCCCCCcchh-----hhhH
Q psy7339 28 LAEFRL-ADHI-YTRIGFN-DSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC-RAGIEPPPSCLPGE-----RLDH 98 (223)
Q Consensus 28 ~~~~~~-~d~I-~~~~~~~-~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g-~~F~aG~~~~~~~~-----~~~~ 98 (223)
.+.++. -|+| +..++++ +..|..+..|+.||.++++.++.++++++||+++.+ +.||+|.|+..... ....
T Consensus 6 ~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~ 85 (708)
T PRK11154 6 AFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEA 85 (708)
T ss_pred eEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHH
Confidence 344555 5778 6788888 588999999999999999999999999999998764 89999998864211 1122
Q ss_pred HHHhHHHHhhhh-hcccceee-----------------------ec--ceeeccccccccCCCCccccchhhhcCHHHHH
Q psy7339 99 YARTTEQVKNRV-LLNHPVFV-----------------------LQ--ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVAS 152 (223)
Q Consensus 99 ~~~~~~~~~~~~-~~~~p~ia-----------------------~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~ 152 (223)
+....+.+...+ .+++|+|| ++ ++|++||+++|++|++|++++|++++|..+|+
T Consensus 86 ~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~vG~~~A~ 165 (708)
T PRK11154 86 LARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTAL 165 (708)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhcCHHHHH
Confidence 333333333444 49999997 43 58999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHH-------------HhhcchH---------------------
Q psy7339 153 ELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHA-------------WAKLSSC--------------------- 198 (223)
Q Consensus 153 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~-------------l~~~~~~--------------------- 198 (223)
+|+++|++++|+||+++||||+++|++++.+++.++|++ ++..+|.
T Consensus 166 ~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~ 245 (708)
T PRK11154 166 DMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKGKPARRPLPVRERLLEGNPLGRALLFKQARKKTLAKTQGNY 245 (708)
T ss_pred HHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHhcCCccCcCCchhhhcccCchhHHHHHHHHHHHHHHhcccCC
Confidence 999999999999999999999999999999999999988 4555553
Q ss_pred -HHHHHHHHHHhHHhcCc
Q psy7339 199 -IVSLLAHLMRGILRDGH 215 (223)
Q Consensus 199 -a~~~~K~~l~~~~~~~~ 215 (223)
+.+.+|++++......+
T Consensus 246 ~A~~~~k~~i~~~~~~~~ 263 (708)
T PRK11154 246 PAPERILDVVRTGLEKGM 263 (708)
T ss_pred hHHHHHHHHHHHHhcCCH
Confidence 68888998887654443
No 81
>KOG0016|consensus
Probab=99.95 E-value=2.1e-27 Score=186.59 Aligned_cols=190 Identities=21% Similarity=0.283 Sum_probs=161.8
Q ss_pred eeccccce-eeecc-cccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhh-----------h
Q psy7339 30 EFRLADHI-YTRIG-FNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGER-----------L 96 (223)
Q Consensus 30 ~~~~~d~I-~~~~~-~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~-----------~ 96 (223)
.++..|++ +...+ +|...|+....++.++.++++...+|+++.+++++|.|+.||+|.|....... .
T Consensus 10 vv~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~~~~~ 89 (266)
T KOG0016|consen 10 VVTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANEESDKA 89 (266)
T ss_pred EEEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcccccchhh
Confidence 35566777 55666 89999999999999999999999999999999999999999999777542111 1
Q ss_pred hHHHHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHH
Q psy7339 97 DHYARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVAS 152 (223)
Q Consensus 97 ~~~~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~ 152 (223)
..+...+..+.+.+ .++||+|| ++++|..|+.++|..|.++.++.+|+++|...|.
T Consensus 90 ~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG~~~A~ 169 (266)
T KOG0016|consen 90 SKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMGSASAN 169 (266)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhchhhHH
Confidence 11222222233333 39999997 8999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHHhcCcCccc
Q psy7339 153 ELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGHATTQ 219 (223)
Q Consensus 153 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~~~~~~~~~ 219 (223)
|+++.|++++|+||.+.|||++++|++++.+.+++-+++++..+|.+++..|+++|....+.+...+
T Consensus 170 E~ll~~~kltA~Ea~~~glVskif~~~tf~~~v~~~ikq~s~l~p~sl~~~K~L~rs~~k~~l~~an 236 (266)
T KOG0016|consen 170 EMLLFGEKLTAQEACEKGLVSKIFPAETFNEEVLKKIKQYSKLSPESLLGMKKLLRSNIKEELIKAN 236 (266)
T ss_pred HHHHhCCcccHHHHHhcCchhhhcChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999988777765544
No 82
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.95 E-value=9.9e-28 Score=219.41 Aligned_cols=168 Identities=17% Similarity=0.185 Sum_probs=139.8
Q ss_pred ccce-eeecccc-cccccccchHHHHHHHHHHHHHhcCCCeEEEE-cCCCCCcCCCCCCCcchh-----hhhHHHHhHHH
Q psy7339 34 ADHI-YTRIGFN-DSIECNASTFALEMKEIAHIIQFLTPRSLILV-DELCRAGIEPPPSCLPGE-----RLDHYARTTEQ 105 (223)
Q Consensus 34 ~d~I-~~~~~~~-~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl-~~~g~~F~aG~~~~~~~~-----~~~~~~~~~~~ 105 (223)
-|+| +..++++ +..|..+..|+.||.++++.++.|+++++||+ +|.|+.||+|.|+..... ....+......
T Consensus 8 ~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 87 (699)
T TIGR02440 8 EDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQV 87 (699)
T ss_pred CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHH
Confidence 4678 6678888 68899999999999999999999999998886 688999999999875321 11122222233
Q ss_pred Hhhhh-hcccceee-----------------------e--cceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCC
Q psy7339 106 VKNRV-LLNHPVFV-----------------------L--QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGR 159 (223)
Q Consensus 106 ~~~~~-~~~~p~ia-----------------------~--~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~ 159 (223)
+...+ .+++|+|| + +++|++||+++|++|++|++++|++++|..+|++++++|+
T Consensus 88 ~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~llltG~ 167 (699)
T TIGR02440 88 LFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDMILTGK 167 (699)
T ss_pred HHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHHHHcCC
Confidence 33333 39999997 3 3799999999999999999999999999999999999999
Q ss_pred CCCHHHHHHcCccccccCChhHHHhHHHHHH-------------HHhhcchHHHH
Q psy7339 160 KLNAQEALQYGFVSGVFTTEEIERDLWPRIH-------------AWAKLSSCIVS 201 (223)
Q Consensus 160 ~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~-------------~l~~~~~~a~~ 201 (223)
.++|+||+++||||+++|++++++++.++|+ +++..+|.+.+
T Consensus 168 ~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~~~~~~~~~~~~~~~~~~~~~~a~~ 222 (699)
T TIGR02440 168 QLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKPLSLQERLLEGTPLGRA 222 (699)
T ss_pred cCCHHHHHhCCCCcEecChhHHHHHHHHHHHhCCCCCCCccchhhhcccCchhHH
Confidence 9999999999999999999999999999998 57777666644
No 83
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=99.95 E-value=1e-26 Score=198.95 Aligned_cols=170 Identities=13% Similarity=0.091 Sum_probs=138.9
Q ss_pred ceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh--------hhhHH
Q psy7339 29 AEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE--------RLDHY 99 (223)
Q Consensus 29 ~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~--------~~~~~ 99 (223)
..++..+++ ...+|+++..|+.+..|+.+|.++++.+++|+++++||++|.|++||+|.|+..... ....+
T Consensus 44 v~~e~~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~ 123 (407)
T PLN02851 44 VLVEGRAKSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLF 123 (407)
T ss_pred eEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHH
Confidence 345556677 788999999999999999999999999999999999999999999999998754211 11122
Q ss_pred HHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHH
Q psy7339 100 ARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELL 155 (223)
Q Consensus 100 ~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ 155 (223)
......+...+ .++||+|+ ++++|++||+++|++|+.|++++|+++.|.. +++++
T Consensus 124 f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~-g~~L~ 202 (407)
T PLN02851 124 FENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYL-GEYLA 202 (407)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHH-HHHHH
Confidence 22222222223 48999997 7999999999999999999999999999974 99999
Q ss_pred HcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHH
Q psy7339 156 YTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIV 200 (223)
Q Consensus 156 l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~ 200 (223)
+||++++++||+++||+++++|.+++ +.+.+.+.++...++.++
T Consensus 203 LTG~~i~a~eA~~~GLa~~~v~~~~l-~~l~~~l~~~~~~~~~~~ 246 (407)
T PLN02851 203 LTGQKLNGVEMIACGLATHYCLNARL-PLIEERLGKLLTDDPAVI 246 (407)
T ss_pred HhCCcCCHHHHHHCCCceeecCHhhH-HHHHHHHHhhccCCHHHH
Confidence 99999999999999999999999987 667777777765554443
No 84
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.95 E-value=4.8e-27 Score=215.04 Aligned_cols=166 Identities=18% Similarity=0.159 Sum_probs=141.7
Q ss_pred ceec-cccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh-------hhhHH
Q psy7339 29 AEFR-LADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE-------RLDHY 99 (223)
Q Consensus 29 ~~~~-~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~-------~~~~~ 99 (223)
..++ .-|+| +..++++++.|..+..|+.||.++++.++.|+++++||++|.|+.||+|.|+..... ....+
T Consensus 8 i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~ 87 (714)
T TIGR02437 8 IQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQW 87 (714)
T ss_pred EEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHH
Confidence 4444 35778 778888999999999999999999999999999999999999999999988854221 11123
Q ss_pred HHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHH
Q psy7339 100 ARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELL 155 (223)
Q Consensus 100 ~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~ 155 (223)
.+..+.+...+ .+|+|+|+ ++++|++||+++|++|++|++++|++++|..+|++++
T Consensus 88 ~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~ll 167 (714)
T TIGR02437 88 LLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWI 167 (714)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 33333444444 49999997 7999999999999999999999999999999999999
Q ss_pred HcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhh
Q psy7339 156 YTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 194 (223)
Q Consensus 156 l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~ 194 (223)
++|++++|+||+++||||+++|++++.+++.++++++..
T Consensus 168 ltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~~~~ 206 (714)
T TIGR02437 168 ASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKDAIN 206 (714)
T ss_pred HcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999988553
No 85
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=99.94 E-value=2e-26 Score=203.66 Aligned_cols=172 Identities=9% Similarity=0.079 Sum_probs=140.3
Q ss_pred Ccceeccccce-eeeccccc----------ccccccchHHHHHHHHHHHHH-hcCCCeEEEEcCC-CCCcCCCCCCCcch
Q psy7339 27 SLAEFRLADHI-YTRIGFND----------SIECNASTFALEMKEIAHIIQ-FLTPRSLILVDEL-CRAGIEPPPSCLPG 93 (223)
Q Consensus 27 ~~~~~~~~d~I-~~~~~~~~----------~~~~~~s~~~~el~~~~~~l~-~~~~~~vvvl~~~-g~~F~aG~~~~~~~ 93 (223)
+...++..++| +..+++++ ..|..+..|+.||.++++.++ .++++++||++|. |+.||+|.|+....
T Consensus 11 ~~v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~ 90 (546)
T TIGR03222 11 RHWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLG 90 (546)
T ss_pred ceEEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHh
Confidence 45667777778 66788765 779999999999999999999 7899999999986 69999998876421
Q ss_pred hh----hhHHH----HhHHHHhhhh-hcccceee-----------------------ec--ceeeccccc-cccCCCCcc
Q psy7339 94 ER----LDHYA----RTTEQVKNRV-LLNHPVFV-----------------------LQ--ATFHTPFTL-RGMTPEGCS 138 (223)
Q Consensus 94 ~~----~~~~~----~~~~~~~~~~-~~~~p~ia-----------------------~~--a~f~~pe~~-~Gl~p~~g~ 138 (223)
.. ...+. .....+...+ .+|+|+|+ ++ ++|++||++ +|++|++++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl~P~~gg 170 (546)
T TIGR03222 91 LSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGVLPGTGG 170 (546)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCcCCccch
Confidence 10 01111 1112222222 38999997 43 799999997 999999999
Q ss_pred ccchh--hhcCHHHHHHHHHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchH
Q psy7339 139 SVLFP--RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSC 198 (223)
Q Consensus 139 ~~~l~--~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~ 198 (223)
..+++ +.+|..+|++|+++|++++|+||++|||||+|||++++++++.+++++|+..||.
T Consensus 171 ~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~ 232 (546)
T TIGR03222 171 LTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAAQSDR 232 (546)
T ss_pred hhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHhCCCC
Confidence 98897 6899999999999999999999999999999999999999999999999988873
No 86
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=99.94 E-value=2.5e-26 Score=175.87 Aligned_cols=180 Identities=18% Similarity=0.179 Sum_probs=152.5
Q ss_pred ceeccc-cce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCC--C-CCcCCCCCCCcchhh--------
Q psy7339 29 AEFRLA-DHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDEL--C-RAGIEPPPSCLPGER-------- 95 (223)
Q Consensus 29 ~~~~~~-d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~--g-~~F~aG~~~~~~~~~-------- 95 (223)
..+... |+| -..+|+|+..|+....-..||.+++.....++++.+|++||. | ++||+|.|.+.....
T Consensus 20 I~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~ 99 (282)
T COG0447 20 ITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDG 99 (282)
T ss_pred eEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCcc
Confidence 334443 677 778999999999999999999999999999999999999975 4 889999877542211
Q ss_pred hhHHHHhHHHHhhhh-hcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHH
Q psy7339 96 LDHYARTTEQVKNRV-LLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVA 151 (223)
Q Consensus 96 ~~~~~~~~~~~~~~~-~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a 151 (223)
..++. .-.+...+ .+|||||| ++++|+..-.++|-+-++.++..|.|.||..+|
T Consensus 100 ~~rLn--vLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VGqKkA 177 (282)
T COG0447 100 IPRLN--VLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVGQKKA 177 (282)
T ss_pred Ccccc--hhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhhhhhh
Confidence 11110 01112222 38999997 789999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhH
Q psy7339 152 SELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGI 210 (223)
Q Consensus 152 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~ 210 (223)
+|+.+.++.++|+||+++|+||.|||.++|++++.+|++++..+||.+++..|.++|..
T Consensus 178 rEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~AlR~LK~Afnad 236 (282)
T COG0447 178 REIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRMLKAAFNAD 236 (282)
T ss_pred HHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999863
No 87
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=99.94 E-value=2.9e-26 Score=179.90 Aligned_cols=161 Identities=20% Similarity=0.244 Sum_probs=138.2
Q ss_pred eccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchh------hhhHHHHhH
Q psy7339 31 FRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGE------RLDHYARTT 103 (223)
Q Consensus 31 ~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~------~~~~~~~~~ 103 (223)
++..++| ...++.++..|..+..|+++|.++++.++.++++++||++|.++.||+|.|+..... ....+.+.+
T Consensus 3 ~~~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~ 82 (195)
T cd06558 3 VERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIREL 82 (195)
T ss_pred EEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHH
Confidence 3444667 677888888999999999999999999999999999999999999999988754211 123344444
Q ss_pred HHHhhhhh-cccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCC
Q psy7339 104 EQVKNRVL-LNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGR 159 (223)
Q Consensus 104 ~~~~~~~~-~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~ 159 (223)
..+...+. +++|+|+ ++++|++||+++|++|+.++++++++++|...+++++++|+
T Consensus 83 ~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~l~g~ 162 (195)
T cd06558 83 QELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGR 162 (195)
T ss_pred HHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHHHcCC
Confidence 44444444 8999997 68999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHcCccccccCChhHHHhHHHHHHH
Q psy7339 160 KLNAQEALQYGFVSGVFTTEEIERDLWPRIHA 191 (223)
Q Consensus 160 ~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~ 191 (223)
.++++||+++|||++++|.+++.+++.+++++
T Consensus 163 ~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a~~ 194 (195)
T cd06558 163 RISAEEALELGLVDEVVPDEELLAAALELARR 194 (195)
T ss_pred ccCHHHHHHcCCCCeecChhHHHHHHHHHHhh
Confidence 99999999999999999999999999998875
No 88
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.93 E-value=7.5e-26 Score=207.65 Aligned_cols=167 Identities=14% Similarity=0.231 Sum_probs=137.0
Q ss_pred cceeccccce-eeeccccc-ccccccchHHHHHHHHHHHHHhcCCCeE-EEEcCCCCCcCCCCCCCcch-----hhhhHH
Q psy7339 28 LAEFRLADHI-YTRIGFND-SIECNASTFALEMKEIAHIIQFLTPRSL-ILVDELCRAGIEPPPSCLPG-----ERLDHY 99 (223)
Q Consensus 28 ~~~~~~~d~I-~~~~~~~~-~~~~~~s~~~~el~~~~~~l~~~~~~~v-vvl~~~g~~F~aG~~~~~~~-----~~~~~~ 99 (223)
...++.-|+| +..+++++ ..|..+..|+.||.++++.++.|+++++ ||++|.|++||+|.|+.... .....+
T Consensus 14 ~~~~~~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 93 (737)
T TIGR02441 14 HRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTAQEVTQL 93 (737)
T ss_pred eEEEEEECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCChHHHHHH
Confidence 4556677889 66777776 5899999999999999999999999985 56799999999998886432 112223
Q ss_pred HHhHHHHhhhh-hcccceee-----------------------ec--ceeeccccccccCCCCccccchhhhcCHHHHHH
Q psy7339 100 ARTTEQVKNRV-LLNHPVFV-----------------------LQ--ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASE 153 (223)
Q Consensus 100 ~~~~~~~~~~~-~~~~p~ia-----------------------~~--a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~ 153 (223)
....+.+...+ .+++|+|| ++ ++|++||+++|++|++|++++|++++|..+|++
T Consensus 94 ~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG~~~A~~ 173 (737)
T TIGR02441 94 SQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALD 173 (737)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhCHHHHHH
Confidence 33334444444 39999997 34 689999999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHcCccccccCC-------------hhHHHhHHHHHHHHhh
Q psy7339 154 LLYTGRKLNAQEALQYGFVSGVFTT-------------EEIERDLWPRIHAWAK 194 (223)
Q Consensus 154 l~l~g~~~~a~eA~~~Glv~~v~~~-------------~~l~~~a~~~a~~l~~ 194 (223)
++++|++++|+||+++||||+|+|+ +++.+.+.+++++++.
T Consensus 174 l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~ 227 (737)
T TIGR02441 174 MMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLAN 227 (737)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999987 5577888888877653
No 89
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=99.93 E-value=1.6e-25 Score=198.45 Aligned_cols=173 Identities=10% Similarity=0.090 Sum_probs=139.7
Q ss_pred Ccceeccccce-eeecccc-------c---ccccccchHHHHHHHHHHHHH-hcCCCeEEEEcCCC-CCcCCCCCCCcch
Q psy7339 27 SLAEFRLADHI-YTRIGFN-------D---SIECNASTFALEMKEIAHIIQ-FLTPRSLILVDELC-RAGIEPPPSCLPG 93 (223)
Q Consensus 27 ~~~~~~~~d~I-~~~~~~~-------~---~~~~~~s~~~~el~~~~~~l~-~~~~~~vvvl~~~g-~~F~aG~~~~~~~ 93 (223)
+...++.-++| +..++++ + ..|..+..|+.||.++++.++ +++++++||++|.+ +.||+|.|+....
T Consensus 15 ~~~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~ 94 (550)
T PRK08184 15 RHWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLG 94 (550)
T ss_pred ceEEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHh
Confidence 34566777888 5677754 3 778999999999999999999 78899999999974 8999998876421
Q ss_pred hh----hhHHH----HhHHHHhhhh-hcccceee-----------------------ec--ceeeccccc-cccCCCCcc
Q psy7339 94 ER----LDHYA----RTTEQVKNRV-LLNHPVFV-----------------------LQ--ATFHTPFTL-RGMTPEGCS 138 (223)
Q Consensus 94 ~~----~~~~~----~~~~~~~~~~-~~~~p~ia-----------------------~~--a~f~~pe~~-~Gl~p~~g~ 138 (223)
.. ...+. .....+...+ .+|+|+|+ ++ ++|++||++ +|++|++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~P~~gg 174 (550)
T PRK08184 95 GSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVLPGTGG 174 (550)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccCCCcch
Confidence 10 01111 1111122222 38999997 34 899999997 999999999
Q ss_pred ccchh--hhcCHHHHHHHHHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHH
Q psy7339 139 SVLFP--RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCI 199 (223)
Q Consensus 139 ~~~l~--~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a 199 (223)
+++++ +++|+.+|++++++|+.++|+||+++||||++||++++++++.+++++|+..||..
T Consensus 175 ~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~~~~~ 237 (550)
T PRK08184 175 LTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAASDRP 237 (550)
T ss_pred HHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCCCC
Confidence 99998 77999999999999999999999999999999999999999999999999887653
No 90
>KOG1682|consensus
Probab=99.89 E-value=1.9e-22 Score=153.24 Aligned_cols=186 Identities=17% Similarity=0.138 Sum_probs=152.4
Q ss_pred cCCcceeccccce-eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcch-hh----hh-
Q psy7339 25 PASLAEFRLADHI-YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPG-ER----LD- 97 (223)
Q Consensus 25 pa~~~~~~~~d~I-~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~-~~----~~- 97 (223)
|++.....-.++| -..++.+...|..+-.|+.+|.+.+....+..++|+||++..|+.|++|.++.... +. -.
T Consensus 30 p~~~g~~~~~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~e~g~d~hae 109 (287)
T KOG1682|consen 30 PSDLGLVKEHNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTNEPGSDIHAE 109 (287)
T ss_pred cccccccccccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhcCccchHHHH
Confidence 5555555666777 55677788889999999999999998888888899999999999999998875421 11 11
Q ss_pred HHHHhHHHHhhhhhcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHH
Q psy7339 98 HYARTTEQVKNRVLLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASEL 154 (223)
Q Consensus 98 ~~~~~~~~~~~~~~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l 154 (223)
-|......+...-..|+|+|+ ++++|..|...+|++....+. -+.|.+++..|.+|
T Consensus 110 vFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGv-AlaRavpRkva~~M 188 (287)
T KOG1682|consen 110 VFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGV-ALARAVPRKVAAYM 188 (287)
T ss_pred HHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcch-hHhhhcchhHHHHH
Confidence 122222222222238999996 789999999999999877666 68899999999999
Q ss_pred HHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHHHHHHHHHhHH
Q psy7339 155 LYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGIL 211 (223)
Q Consensus 155 ~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~~~~ 211 (223)
++||++++++||+..|||++|||++|+..++.++++.|...++..+...|.......
T Consensus 189 L~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~srav~slgk~f~y~q~ 245 (287)
T KOG1682|consen 189 LMTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRAVISLGKEFYYKQL 245 (287)
T ss_pred HHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998775543
No 91
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=99.88 E-value=5.8e-23 Score=189.15 Aligned_cols=101 Identities=40% Similarity=0.595 Sum_probs=98.4
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC 80 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g 80 (223)
|||||||||++|++.+|||+||||||+.+.++++|+|||+++..|++..+.|+||.||.++...+.+..+.+.|++|+.|
T Consensus 617 M~GKSTylRQvali~imAQiGsfVPA~~A~i~ivD~IfTRiGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvilDEiG 696 (843)
T COG0249 617 MGGKSTYLRQVALIVILAQIGSFVPAEKARIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLVILDEIG 696 (843)
T ss_pred CCccHHHHHHHHHHHHHHHcCCCeeHHHccccccceeeecccccchhhccccHHHHHHHHHHHHHHhCCCCcEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCCcchhhhhHHHH
Q psy7339 81 RAGIEPPPSCLPGERLDHYAR 101 (223)
Q Consensus 81 ~~F~aG~~~~~~~~~~~~~~~ 101 (223)
+|+++-|+++++.+.++++.+
T Consensus 697 RGTsT~DGlaIA~Av~eyL~~ 717 (843)
T COG0249 697 RGTSTYDGLAIAWAVLEYLHE 717 (843)
T ss_pred CCCCcchhHHHHHHHHHHHHh
Confidence 999999999999888888765
No 92
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=99.87 E-value=1.4e-22 Score=163.06 Aligned_cols=101 Identities=44% Similarity=0.655 Sum_probs=87.3
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC 80 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g 80 (223)
|||||||||+|+++++|||+|+||||++++++++|+|+++++++|++..+.|+|..|+.++...++..++..+|++|+.|
T Consensus 53 ~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g 132 (235)
T PF00488_consen 53 MSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEKSLVLIDELG 132 (235)
T ss_dssp TSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEESTT
T ss_pred ccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccceeeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred CCcCCCCCCCcchhhhhHHHH
Q psy7339 81 RAGIEPPPSCLPGERLDHYAR 101 (223)
Q Consensus 81 ~~F~aG~~~~~~~~~~~~~~~ 101 (223)
++++.-++.++..+.++++.+
T Consensus 133 ~gT~~~eg~ai~~aile~l~~ 153 (235)
T PF00488_consen 133 RGTNPEEGIAIAIAILEYLLE 153 (235)
T ss_dssp TTSSHHHHHHHHHHHHHHHHH
T ss_pred CCCChhHHHHHHHHHHHHHHH
Confidence 999999888887777777764
No 93
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=99.83 E-value=8.9e-21 Score=176.01 Aligned_cols=101 Identities=40% Similarity=0.574 Sum_probs=96.8
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC 80 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g 80 (223)
|||||||||+||++++|||+|+||||+.++++++|+|+++++++|++..+.|+|+.||.++...++...+.++|++|+.|
T Consensus 602 mgGKSt~lrqvali~imAq~G~~VPA~~a~i~~~D~Iftrig~~d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~G 681 (840)
T TIGR01070 602 MGGKSTYMRQTALIALLAQIGSFVPAESAELPLFDRIFTRIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDEIG 681 (840)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCccchheEeccccEEEEecCcccchhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCCcchhhhhHHHH
Q psy7339 81 RAGIEPPPSCLPGERLDHYAR 101 (223)
Q Consensus 81 ~~F~aG~~~~~~~~~~~~~~~ 101 (223)
++++..++.++..+.++++.+
T Consensus 682 rGT~~~dg~aia~ai~e~l~~ 702 (840)
T TIGR01070 682 RGTSTYDGLALAWAIAEYLHE 702 (840)
T ss_pred CCCChhHHHHHHHHHHHHHHh
Confidence 999999999888777777665
No 94
>KOG0220|consensus
Probab=99.82 E-value=9e-21 Score=166.34 Aligned_cols=100 Identities=49% Similarity=0.640 Sum_probs=94.5
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC 80 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g 80 (223)
|||||||||+++++.+|||+||||||+.+.+++|++||++|+.+|++..++|+|+.|+.++.-.+...+...+||+|+.|
T Consensus 631 MsGKSTYLKQvAl~~IMAQIGc~IPA~YaS~pIf~RIFtRmg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDELg 710 (867)
T KOG0220|consen 631 MSGKSTYLKQVALCQIMAQIGSYVPAEYASFRVFKRIFTRMGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDELG 710 (867)
T ss_pred CCcchHHHHHHHHHHHHHHhccCcchhhccchHHHHHHHHhcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCCcchhhhhHHH
Q psy7339 81 RAGIEPPPSCLPGERLDHYA 100 (223)
Q Consensus 81 ~~F~aG~~~~~~~~~~~~~~ 100 (223)
++++.-+++.+..+.-+++.
T Consensus 711 R~TSteeGiaityAvCE~lL 730 (867)
T KOG0220|consen 711 RGTSTEEGIAITYAVCEYLL 730 (867)
T ss_pred cCCccccchhhHHHHHHHHH
Confidence 99999999988666555443
No 95
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=99.80 E-value=1e-19 Score=169.65 Aligned_cols=101 Identities=39% Similarity=0.586 Sum_probs=95.9
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC 80 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g 80 (223)
|||||||||+||++++|||+|+||||++++++++|+|+++++..|++..+.|+|+.|+.++...+...++.++|++|+.|
T Consensus 617 ~~GKSt~lr~v~l~~ilAq~G~~VPa~~a~i~~~d~I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~G 696 (854)
T PRK05399 617 MAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDRIFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVLLDEIG 696 (854)
T ss_pred CCCcHHHHHHHHHHHHHHhcCCceeccceEecccCeeeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCCcchhhhhHHHH
Q psy7339 81 RAGIEPPPSCLPGERLDHYAR 101 (223)
Q Consensus 81 ~~F~aG~~~~~~~~~~~~~~~ 101 (223)
+++++-++.++..+.++++.+
T Consensus 697 rGTs~~dg~aia~aile~l~~ 717 (854)
T PRK05399 697 RGTSTYDGLSIAWAVAEYLHD 717 (854)
T ss_pred CCCCcchhHHHHHHHHHHHHh
Confidence 999999988877777776654
No 96
>KOG1684|consensus
Probab=99.79 E-value=1.1e-18 Score=143.27 Aligned_cols=163 Identities=13% Similarity=0.092 Sum_probs=127.9
Q ss_pred eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCC-CCCcCCCCCCCcch---------hhhhHHHHhHHHHh
Q psy7339 38 YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDEL-CRAGIEPPPSCLPG---------ERLDHYARTTEQVK 107 (223)
Q Consensus 38 ~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~-g~~F~aG~~~~~~~---------~~~~~~~~~~~~~~ 107 (223)
...+|+|..+|+.+-.|...+.-.+...+.++.+++||+-|. +++||+|.|+.... .....|.+.+....
T Consensus 50 ~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYsl~~ 129 (401)
T KOG1684|consen 50 VITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYSLNH 129 (401)
T ss_pred EEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999999999999987 59999999864311 11222333332222
Q ss_pred hhhhcccceee-----------------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCCCCHH
Q psy7339 108 NRVLLNHPVFV-----------------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQ 164 (223)
Q Consensus 108 ~~~~~~~p~ia-----------------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~ 164 (223)
..-.+.||.|+ +++.|++||..+|++|+.|++++++|+.| ....++.+||+++++.
T Consensus 130 ~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg-~lg~YLgLTG~rl~Ga 208 (401)
T KOG1684|consen 130 LIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPDVGASYFLSRLPG-YLGLYLGLTGQRLSGA 208 (401)
T ss_pred HHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccCccceeehhhCcc-HHHHhhhhccceecch
Confidence 22238888887 89999999999999999999999999888 8899999999999999
Q ss_pred HHHHcCccccccCChhHHHhHHHHHHHHhhcchHHHH
Q psy7339 165 EALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVS 201 (223)
Q Consensus 165 eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~ 201 (223)
+|+..||.++.||.+++..-=.++...+...|...+.
T Consensus 209 D~~~~GlATHyv~S~~l~~Lee~L~~~l~~dp~~~I~ 245 (401)
T KOG1684|consen 209 DALRCGLATHYVPSEKLPSLEERLLKNLNDDPQSVIN 245 (401)
T ss_pred HHHHhcchhhccchhhhhHHHHHHhhhcCCCcHHHHH
Confidence 9999999999999877643333344333333334433
No 97
>KOG0218|consensus
Probab=99.79 E-value=3.5e-20 Score=162.81 Aligned_cols=117 Identities=35% Similarity=0.517 Sum_probs=105.9
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC 80 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g 80 (223)
|||||.|+|+++++.+|||+|+||||+.+++++||+|+|+|+..|++..+.|+|+.||.+..+.+.+..+...|++++.|
T Consensus 840 MGGKSsyIrQvALitIMAQiGsfVPAeea~l~IfdgvltRmGAsDnI~~grSTFm~Emldt~eil~kat~~SlvilDElG 919 (1070)
T KOG0218|consen 840 MGGKSSYIRQVALITIMAQIGSFVPAEEARLSIFDGVLTRMGASDNIINGRSTFMVEMLDTLEILKKATKRSLVILDELG 919 (1070)
T ss_pred CCCchHHHHHHHHHHHHHHhcCccchHHhhhhHHhhHHHhhccccccccchhHHHHHHHHHHHHHHhcccchhhhhHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCCcchhhhhHHHHhHHHHhhhhhcccceee
Q psy7339 81 RAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFV 118 (223)
Q Consensus 81 ~~F~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ia 118 (223)
++++.-|+.++..+.+++|.+....+.- +....|-++
T Consensus 920 RGTsThDGiAIsYAtL~yf~~~~k~l~L-FvTHfP~l~ 956 (1070)
T KOG0218|consen 920 RGTSTHDGIAISYATLKYFSELSKCLIL-FVTHFPMLG 956 (1070)
T ss_pred CCCccccchhHHHHHHHHHHHhhceeEE-eeecCcchh
Confidence 9999999999999999998876554321 223445444
No 98
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.77 E-value=1e-18 Score=138.98 Aligned_cols=101 Identities=39% Similarity=0.557 Sum_probs=94.1
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC 80 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g 80 (223)
|+||||++|+|+++.+|+|+|+||||+.++++++|+|+++++..|++..+.|+|+.|+.++...++...+.++|++||.+
T Consensus 40 ~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~ 119 (218)
T cd03286 40 MGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHATPDSLVILDELG 119 (218)
T ss_pred CCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHHHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred CCcCCCCCCCcchhhhhHHHH
Q psy7339 81 RAGIEPPPSCLPGERLDHYAR 101 (223)
Q Consensus 81 ~~F~aG~~~~~~~~~~~~~~~ 101 (223)
+++++.+...+....++++.+
T Consensus 120 ~Gt~~~dg~~la~ail~~L~~ 140 (218)
T cd03286 120 RGTSTHDGYAIAHAVLEYLVK 140 (218)
T ss_pred CCCCchHHHHHHHHHHHHHHH
Confidence 999999888776666665553
No 99
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.72 E-value=1.8e-17 Score=132.08 Aligned_cols=101 Identities=43% Similarity=0.617 Sum_probs=92.4
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC 80 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g 80 (223)
|+|||||+|+|+.+.+|+|.|+|+|++.++++++|+|+++++++|++..+.|+|+.|+.++...++..++..++++|+.|
T Consensus 41 ~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~ 120 (222)
T cd03287 41 MGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTSRSLVILDELG 120 (222)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCCCeEEEEccCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred CCcCCCCCCCcchhhhhHHHH
Q psy7339 81 RAGIEPPPSCLPGERLDHYAR 101 (223)
Q Consensus 81 ~~F~aG~~~~~~~~~~~~~~~ 101 (223)
+++++-+......+.++.+.+
T Consensus 121 ~gT~~~d~~~i~~~il~~l~~ 141 (222)
T cd03287 121 RGTSTHDGIAIAYATLHYLLE 141 (222)
T ss_pred CCCChhhHHHHHHHHHHHHHh
Confidence 999988776555555555543
No 100
>KOG0219|consensus
Probab=99.69 E-value=3.6e-17 Score=145.72 Aligned_cols=99 Identities=40% Similarity=0.557 Sum_probs=92.8
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC 80 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g 80 (223)
|||||||+|++|.+.+|||+|||||++.+++++.|+|+++.+..|+...+.|+||.|+.+....++.....++|++++.|
T Consensus 655 MGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il~RVGA~D~q~kG~STFM~Emleta~Ilr~at~~SliiiDELG 734 (902)
T KOG0219|consen 655 MGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGILTRVGAGDSQLKGISTFMAEMLETASILRRATKNSLIIIDELG 734 (902)
T ss_pred cCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHHhhhccchhhhcchHHHHHHHHHHHHHHHhcCCCcEEEEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCCcchhhhhHH
Q psy7339 81 RAGIEPPPSCLPGERLDHY 99 (223)
Q Consensus 81 ~~F~aG~~~~~~~~~~~~~ 99 (223)
+++++-|+..++.+.-++.
T Consensus 735 RGTSt~DGfgiAwai~ehi 753 (902)
T KOG0219|consen 735 RGTSTYDGFGIAWAIAEHI 753 (902)
T ss_pred CCceeccCccHHHHHHHHH
Confidence 9999988877765554443
No 101
>KOG0221|consensus
Probab=99.66 E-value=1.1e-17 Score=144.97 Aligned_cols=101 Identities=34% Similarity=0.572 Sum_probs=96.4
Q ss_pred CchhHHHHHHHHHHHHHhhCCcccCCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCCC
Q psy7339 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCR 81 (223)
Q Consensus 2 ~gks~~~~~i~~~~~l~~~g~~vpa~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~ 81 (223)
||||+|+|++|++++|||+|+||||+.+++.+.|+|+++|..-+++..+.|+|+.+++++...+.+..+.++|++++.||
T Consensus 610 sGKSiYlkqvglivfLahIGsFVPAe~A~IGivDrI~tri~s~esv~~gqSTFmiD~~Qva~aLr~AT~~SLvlIDEfGK 689 (849)
T KOG0221|consen 610 SGKSIYLKQVGLIVFLAHIGSFVPAEEAEIGIVDRIFTRIHSCESVSLGQSTFMIDLNQVAKALRNATAQSLVLIDEFGK 689 (849)
T ss_pred CCceEEEeechhhhHHHhhccccchhhhhcchHHHHHHHhhhhhhhhhhhhHHHHhHHHHHHHHHHhhcCcEEEEhhccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCcchhhhhHHHHh
Q psy7339 82 AGIEPPPSCLPGERLDHYART 102 (223)
Q Consensus 82 ~F~aG~~~~~~~~~~~~~~~~ 102 (223)
++..-+++++....+.+|...
T Consensus 690 GT~tedGlsLlasvm~~w~~r 710 (849)
T KOG0221|consen 690 GTNTEDGLSLLASVMRHWLAR 710 (849)
T ss_pred CccccccHHHHHHHHHHHHhc
Confidence 999999998887777777643
No 102
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.65 E-value=3.3e-16 Score=121.98 Aligned_cols=89 Identities=48% Similarity=0.688 Sum_probs=82.7
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC 80 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g 80 (223)
|||||||+|+|+++.+|+|+|+||||+.++++++|+++++++..++...+.|+|..|+.++...+....+.+++++|+.+
T Consensus 9 ~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~llllDEp~ 88 (185)
T smart00534 9 MGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSLVLLDELG 88 (185)
T ss_pred CCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999887788999999998
Q ss_pred CCcCCCCCC
Q psy7339 81 RAGIEPPPS 89 (223)
Q Consensus 81 ~~F~aG~~~ 89 (223)
+++..-+..
T Consensus 89 ~g~d~~~~~ 97 (185)
T smart00534 89 RGTSTYDGV 97 (185)
T ss_pred CCCCHHHHH
Confidence 887765433
No 103
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.64 E-value=6.2e-16 Score=123.62 Aligned_cols=99 Identities=38% Similarity=0.538 Sum_probs=88.7
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC 80 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g 80 (223)
||||||++|+|+++.+|+|+|+||||+.++++++|.|+++++..++...+.|.|+.|+.+....++...+..+|++||.|
T Consensus 40 ~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~ 119 (222)
T cd03285 40 MGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELG 119 (222)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeeccccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999877788999999999
Q ss_pred CCcCCCCCCCcchhhhhHH
Q psy7339 81 RAGIEPPPSCLPGERLDHY 99 (223)
Q Consensus 81 ~~F~aG~~~~~~~~~~~~~ 99 (223)
++++.-|........++.+
T Consensus 120 ~gT~~lD~~~~~~~il~~l 138 (222)
T cd03285 120 RGTSTYDGFGLAWAIAEYI 138 (222)
T ss_pred CCCChHHHHHHHHHHHHHH
Confidence 9999887665543333333
No 104
>KOG0217|consensus
Probab=99.62 E-value=1.1e-16 Score=145.43 Aligned_cols=102 Identities=37% Similarity=0.590 Sum_probs=98.3
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC 80 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g 80 (223)
||||||+||++++..+|||+||+|||+.++++++|+|+|+++++|++..+.|+|+-||.+....+......+.|++++.|
T Consensus 909 mgGKSTllRq~c~~vilaq~G~~VPa~~~~~tpidrI~tRlGA~D~im~g~STF~vELsET~~IL~~aT~~SLvi~DELG 988 (1125)
T KOG0217|consen 909 MGGKSTLLRQACIAVILAQIGCDVPAEVMELTPIDRIFTRLGANDDIMSGESTFFVELSETKKILKHATRHSLVIVDELG 988 (1125)
T ss_pred cCCchHHHHHHHHHHHHHHhCCCccHHHhcccchHHHhhhcccccchhcCCceEEEeccchHHHHhhcCccceeeehhhc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCCcchhhhhHHHHh
Q psy7339 81 RAGIEPPPSCLPGERLDHYART 102 (223)
Q Consensus 81 ~~F~aG~~~~~~~~~~~~~~~~ 102 (223)
++++.-|+..++.+.++++...
T Consensus 989 RGtst~DG~aIA~aVLe~l~~~ 1010 (1125)
T KOG0217|consen 989 RGTSTFDGTAIAEAVLEHLSEG 1010 (1125)
T ss_pred CcccccCCcchHHHHHHHHHhc
Confidence 9999999999999988887653
No 105
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.62 E-value=8.6e-16 Score=121.19 Aligned_cols=100 Identities=43% Similarity=0.640 Sum_probs=89.0
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC 80 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g 80 (223)
||||||++|+++.+.+|+|+|+||||..++++++|.|+++++..|+.....|+|..|+.++...+....+.+++++||.+
T Consensus 39 ~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~ 118 (204)
T cd03282 39 MSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELG 118 (204)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcCCCcEEEecccc
Confidence 79999999999999999999999999999999999999999999999999999999999998888877788999999999
Q ss_pred CCcCCCCCCCcchhhhhHHH
Q psy7339 81 RAGIEPPPSCLPGERLDHYA 100 (223)
Q Consensus 81 ~~F~aG~~~~~~~~~~~~~~ 100 (223)
++++.-+......+.++++.
T Consensus 119 ~gt~~~~~~~l~~~il~~l~ 138 (204)
T cd03282 119 RGTSSADGFAISLAILECLI 138 (204)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99988765554444444443
No 106
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.59 E-value=1.5e-15 Score=140.65 Aligned_cols=99 Identities=31% Similarity=0.398 Sum_probs=88.9
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCc-ceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASL-AEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDEL 79 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~-~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~ 79 (223)
|||||||||+||++.+|+|+|+||||+. +++++||+|++.+++.|++..+.|+|..++.+....+....+..+|++|+.
T Consensus 337 ~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~ 416 (782)
T PRK00409 337 TGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDEL 416 (782)
T ss_pred CCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCC
Confidence 8999999999999999999999999996 789999999999999999999999999999999999988777899999999
Q ss_pred CCCcCCCCCCCcchhhhhHH
Q psy7339 80 CRAGIEPPPSCLPGERLDHY 99 (223)
Q Consensus 80 g~~F~aG~~~~~~~~~~~~~ 99 (223)
++++++.+...+....++++
T Consensus 417 ~~GtDp~eg~ala~aile~l 436 (782)
T PRK00409 417 GAGTDPDEGAALAISILEYL 436 (782)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999876665544444444
No 107
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.59 E-value=2.5e-15 Score=119.45 Aligned_cols=99 Identities=34% Similarity=0.589 Sum_probs=87.1
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC 80 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g 80 (223)
|||||||+|+|+++.+|+|.|+++|++.+++..+|++++.++.++++..+.|+|..|+.++...+....+.+++++||.+
T Consensus 39 g~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~slvllDE~~ 118 (213)
T cd03281 39 SSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRRSLVLIDEFG 118 (213)
T ss_pred CCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCCcEEEecccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999888888999999998
Q ss_pred CCcCCCCCCCcchhhhhHH
Q psy7339 81 RAGIEPPPSCLPGERLDHY 99 (223)
Q Consensus 81 ~~F~aG~~~~~~~~~~~~~ 99 (223)
++...-+......+.++++
T Consensus 119 ~gtd~~~~~~~~~ail~~l 137 (213)
T cd03281 119 KGTDTEDGAGLLIATIEHL 137 (213)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 8887654443333344443
No 108
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.56 E-value=6.4e-15 Score=117.33 Aligned_cols=91 Identities=45% Similarity=0.684 Sum_probs=85.2
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC 80 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g 80 (223)
|||||||+|+|+++.+|+|.|+++|++..+++++++|+++++..|++..+.|+|+.|+.++...+....+..++++||.|
T Consensus 40 ~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~ 119 (216)
T cd03284 40 MAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIG 119 (216)
T ss_pred CCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999887788999999999
Q ss_pred CCcCCCCCCCc
Q psy7339 81 RAGIEPPPSCL 91 (223)
Q Consensus 81 ~~F~aG~~~~~ 91 (223)
+++++-+....
T Consensus 120 ~gt~~lD~~~~ 130 (216)
T cd03284 120 RGTSTYDGLSI 130 (216)
T ss_pred CCCChHHHHHH
Confidence 99988776543
No 109
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.38 E-value=1.4e-12 Score=102.86 Aligned_cols=86 Identities=47% Similarity=0.780 Sum_probs=80.6
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC 80 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g 80 (223)
|||||||+|+|+...+++|.|+++|++.+++..+|++++.+...++...+.|.|..|+.++...+....+..++++|+..
T Consensus 39 g~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~ 118 (202)
T cd03243 39 MGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPRSLVLIDELG 118 (202)
T ss_pred CCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccCCeEEEEecCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999888889999999988
Q ss_pred CCcCCC
Q psy7339 81 RAGIEP 86 (223)
Q Consensus 81 ~~F~aG 86 (223)
.++...
T Consensus 119 ~gld~~ 124 (202)
T cd03243 119 RGTSTA 124 (202)
T ss_pred CCCCHH
Confidence 777654
No 110
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.35 E-value=3e-12 Score=100.85 Aligned_cols=86 Identities=40% Similarity=0.559 Sum_probs=77.6
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCc-ceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASL-AEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDEL 79 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~-~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~ 79 (223)
|||||||+|+|+++.+|+|.|+++|+.. ..+..+|++++.++.++....+.++|..++++....+....+.+++++|+.
T Consensus 38 g~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp 117 (200)
T cd03280 38 AGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDEL 117 (200)
T ss_pred CCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCC
Confidence 7999999999999999999999999985 568889999999999999999999999999999988887778899999998
Q ss_pred CCCcCCC
Q psy7339 80 CRAGIEP 86 (223)
Q Consensus 80 g~~F~aG 86 (223)
..+...-
T Consensus 118 ~~glD~~ 124 (200)
T cd03280 118 GSGTDPV 124 (200)
T ss_pred CCCCCHH
Confidence 7766544
No 111
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.32 E-value=2.1e-12 Score=119.57 Aligned_cols=100 Identities=36% Similarity=0.424 Sum_probs=88.9
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCc-ceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASL-AEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDEL 79 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~-~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~ 79 (223)
|||||||+|+|+.+.+|+|.|++||+.. ..++.||++++.+++++++..+.|+|..++.+....+....+..+|++|+.
T Consensus 332 g~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~ 411 (771)
T TIGR01069 332 TGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDEL 411 (771)
T ss_pred CCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCC
Confidence 7999999999999999999999999986 679999999999999999999999999999999999988778899999999
Q ss_pred CCCcCCCCCCCcchhhhhHHH
Q psy7339 80 CRAGIEPPPSCLPGERLDHYA 100 (223)
Q Consensus 80 g~~F~aG~~~~~~~~~~~~~~ 100 (223)
++++...+...+....++++.
T Consensus 412 g~GtD~~eg~ala~aiLe~l~ 432 (771)
T TIGR01069 412 GAGTDPDEGSALAISILEYLL 432 (771)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 999988876665545555443
No 112
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.25 E-value=1.5e-11 Score=96.78 Aligned_cols=85 Identities=29% Similarity=0.422 Sum_probs=75.8
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcC--CCeEEEEcC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLT--PRSLILVDE 78 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~--~~~vvvl~~ 78 (223)
|||||||+|+|+...+|+|.|+++|+..+.+. +++++..+...+++..+.+.+..|+.++.+.++.-. +.+++++|+
T Consensus 35 g~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q-~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~p~llllDE 113 (199)
T cd03283 35 MSGKSTFLRTIGVNVILAQAGAPVCASSFELP-PVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGEPVLFLLDE 113 (199)
T ss_pred CCChHHHHHHHHHHHHHHHcCCEEecCccCcc-cceEEEeccchhccccccChHHHHHHHHHHHHHhccCCCCeEEEEec
Confidence 79999999999999999999999999998888 789999999999998888888888888888888766 789999999
Q ss_pred CCCCcCCC
Q psy7339 79 LCRAGIEP 86 (223)
Q Consensus 79 ~g~~F~aG 86 (223)
...+....
T Consensus 114 p~~glD~~ 121 (199)
T cd03283 114 IFKGTNSR 121 (199)
T ss_pred ccCCCCHH
Confidence 87666654
No 113
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.21 E-value=3.7e-11 Score=92.89 Aligned_cols=121 Identities=8% Similarity=-0.041 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhhhhHHHHhHHHHhhhhhcccceee--------------
Q psy7339 53 TFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFV-------------- 118 (223)
Q Consensus 53 ~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ia-------------- 118 (223)
....+|.+.++.+++|+++++||++. +|+|.+... .+.+.+.+..+. .++||+|+
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~----~~~~~~~i~~~~---~~~kpVia~v~G~a~g~g~~la 90 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTA----SEVIRAELAAAR---AAGKPVVASGGGNAASGGYWIS 90 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHH----HHHHHHHHHHHH---hCCCCEEEEECCchhHHHHHHH
Confidence 34679999999999999999999986 577765432 122222222222 37899997
Q ss_pred ---------ecceeeccccccccCCCCcccc--------chhhhcC--HHHHHHHHHcCCCCCHHHHHHcCccccccCCh
Q psy7339 119 ---------LQATFHTPFTLRGMTPEGCSSV--------LFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179 (223)
Q Consensus 119 ---------~~a~f~~pe~~~Gl~p~~g~~~--------~l~~~vg--~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~ 179 (223)
++++|+.+.+..+..+...... .+++..| +...++++..|..++|+||++.||||++.+.+
T Consensus 91 ~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~~ 170 (177)
T cd07014 91 TPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSFD 170 (177)
T ss_pred HhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCCHH
Confidence 5666666655444222111111 3344445 78889999999999999999999999999988
Q ss_pred hHHHh
Q psy7339 180 EIERD 184 (223)
Q Consensus 180 ~l~~~ 184 (223)
++.+.
T Consensus 171 e~~~~ 175 (177)
T cd07014 171 DAVAK 175 (177)
T ss_pred HHHHH
Confidence 77643
No 114
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.07 E-value=7.6e-10 Score=86.26 Aligned_cols=66 Identities=15% Similarity=0.135 Sum_probs=52.9
Q ss_pred ecceeeccccccccCCCC--------------ccccchhhhcCH--HHHHHHHHcCCCCCHHHHHHcCccccccCCh-hH
Q psy7339 119 LQATFHTPFTLRGMTPEG--------------CSSVLFPRIFGN--SVASELLYTGRKLNAQEALQYGFVSGVFTTE-EI 181 (223)
Q Consensus 119 ~~a~f~~pe~~~Gl~p~~--------------g~~~~l~~~vg~--~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~-~l 181 (223)
++++|+.+++..+..++. .....+++..|+ .++++++++|+.|+++||+++||||++++++ ++
T Consensus 90 p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~ 169 (187)
T cd07020 90 PGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNEL 169 (187)
T ss_pred CCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHH
Confidence 788888888875544432 234478888897 7899999999999999999999999999986 56
Q ss_pred HHh
Q psy7339 182 ERD 184 (223)
Q Consensus 182 ~~~ 184 (223)
.+.
T Consensus 170 ~~~ 172 (187)
T cd07020 170 LKK 172 (187)
T ss_pred HHH
Confidence 543
No 115
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=98.94 E-value=3.8e-10 Score=103.58 Aligned_cols=97 Identities=34% Similarity=0.432 Sum_probs=86.1
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCcc-eeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASLA-EFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDEL 79 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~~-~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~ 79 (223)
|||||+.+||+|+..+|+|+|.|+|+... ++..|+.|+.-++|+|++.++.|+|...+..+.+.++..+ ..+++++.
T Consensus 327 ~GGKtvtLKTlgl~~lm~q~gl~i~a~~gsei~~F~~i~aDIGDeQsIeqsLSTFSshm~~i~~il~~~d--sLvl~DEl 404 (753)
T COG1193 327 TGGKTVTLKTLGLLRLMAQSGLPIPALEGSELPVFVKIFADIGDEQSIEQSLSTFSSHMTNIVEILEKAD--SLVLFDEL 404 (753)
T ss_pred CCcceehHHHHHHHHHHHHcCCCeeccCCCcchhHHHhhhccCcHHHHHHHHhhhHHHHHHHHHHHhhcc--hhHHHHHh
Confidence 79999999999999999999999999876 7999999999999999999999999999999999995554 89999999
Q ss_pred CCCcCCCCCCCcchhhhhHH
Q psy7339 80 CRAGIEPPPSCLPGERLDHY 99 (223)
Q Consensus 80 g~~F~aG~~~~~~~~~~~~~ 99 (223)
|.++.+-++.+++.+.++++
T Consensus 405 g~GTdp~EgaaLai~ile~l 424 (753)
T COG1193 405 GSGTDPDEGAALAIAILEDL 424 (753)
T ss_pred hcCCCcchhHHHHHHHHHHH
Confidence 88888777766665555544
No 116
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=98.59 E-value=6.8e-08 Score=87.44 Aligned_cols=124 Identities=10% Similarity=0.088 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCC---CCCcCCCCCCCcchhhhhHHHHhHHHHhhhhhcccceee------------
Q psy7339 54 FALEMKEIAHIIQFLTPRSLILVDEL---CRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFV------------ 118 (223)
Q Consensus 54 ~~~el~~~~~~l~~~~~~~vvvl~~~---g~~F~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ia------------ 118 (223)
..+++.+.++.+..|+++++||++-. |..|++ +.+.+.+..+.. .+||+|+
T Consensus 330 ~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~as-----------e~i~~~i~~~~~---~gKPVva~~~g~aaSggY~ 395 (584)
T TIGR00705 330 GGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS-----------EIIRRELARAQA---RGKPVIVSMGAMAASGGYW 395 (584)
T ss_pred CHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHH-----------HHHHHHHHHHHh---CCCcEEEEECCccccHHHH
Confidence 35678889999999999999999832 222321 112222222222 5688886
Q ss_pred -----------eccee------eccc------cccccCCCCccccchhh----------------------------hcC
Q psy7339 119 -----------LQATF------HTPF------TLRGMTPEGCSSVLFPR----------------------------IFG 147 (223)
Q Consensus 119 -----------~~a~f------~~pe------~~~Gl~p~~g~~~~l~~----------------------------~vg 147 (223)
+.+.+ +.+. .++|+.+....+..+.. .|+
T Consensus 396 iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va 475 (584)
T TIGR00705 396 IASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVS 475 (584)
T ss_pred HHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 4442 57888887776666654 666
Q ss_pred HHH-----HHHHHHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhc
Q psy7339 148 NSV-----ASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKL 195 (223)
Q Consensus 148 ~~~-----a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~ 195 (223)
..+ +.+.+.+|+.++++||+++||||++. .+ +.+.+.|++++..
T Consensus 476 ~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig---~~-~~Ai~~a~~la~~ 524 (584)
T TIGR00705 476 AGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALG---GL-DEAVAKAAKLAHC 524 (584)
T ss_pred hhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCC---CH-HHHHHHHHHHcCC
Confidence 666 78889999999999999999999994 33 6677778888776
No 117
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.48 E-value=3.7e-07 Score=69.45 Aligned_cols=74 Identities=35% Similarity=0.435 Sum_probs=59.5
Q ss_pred CCchhHHHHHHHHHHHHHh----------hCCcccCCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcC-
Q psy7339 1 MSGKSVYIKQVALLQIMAQ----------VGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLT- 69 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~----------~g~~vpa~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~- 69 (223)
||||||++|+|+++..+++ .|+++|+..+.+ |++.+. .|.-..++..+...+...+
T Consensus 31 gsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----i~~~~~--------lS~G~~~~~~la~~L~~~~~ 97 (162)
T cd03227 31 GSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAEL-----IFTRLQ--------LSGGEKELSALALILALASL 97 (162)
T ss_pred CCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEE-----ehheee--------ccccHHHHHHHHHHHHhcCC
Confidence 7999999999999999999 999999998776 444332 4445778888888887655
Q ss_pred -CCeEEEEcCCCCCcCCCC
Q psy7339 70 -PRSLILVDELCRAGIEPP 87 (223)
Q Consensus 70 -~~~vvvl~~~g~~F~aG~ 87 (223)
+..++++|+.++++..-+
T Consensus 98 ~~~~llllDEp~~gld~~~ 116 (162)
T cd03227 98 KPRPLYILDEIDRGLDPRD 116 (162)
T ss_pred CCCCEEEEeCCCCCCCHHH
Confidence 679999999988777654
No 118
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=98.39 E-value=2e-06 Score=68.32 Aligned_cols=56 Identities=7% Similarity=-0.034 Sum_probs=40.5
Q ss_pred chHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhhhhHHHHhHHHHhhhhhcccceee
Q psy7339 52 STFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFV 118 (223)
Q Consensus 52 s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ia 118 (223)
...+.++.+.++.+..|+++++||++ .||+|.+.... +.+.+.+..+. .++||+|+
T Consensus 20 ~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~----~~~~~~l~~~~---~~~kpVia 75 (211)
T cd07019 20 NVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTAS----EVIRAELAAAR---AAGKPVVV 75 (211)
T ss_pred ccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHH----HHHHHHHHHHH---hCCCCEEE
Confidence 45678999999999999999999997 78999776432 22222222222 27899997
No 119
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=98.31 E-value=2.1e-06 Score=65.11 Aligned_cols=106 Identities=17% Similarity=0.097 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhhhhHHHHhHHHHhhhhhcccceee--------------
Q psy7339 53 TFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFV-------------- 118 (223)
Q Consensus 53 ~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ia-------------- 118 (223)
....++.+.++.++.+ +.-.+.+++.|....+|. .+. +.+. .+++|+++
T Consensus 15 ~~~~~~~~~l~~~~~~-~~i~l~inspGG~~~~~~----------~i~---~~i~---~~~~pvi~~v~g~a~s~g~~ia 77 (160)
T cd07016 15 VTAKEFKDALDALGDD-SDITVRINSPGGDVFAGL----------AIY---NALK---RHKGKVTVKIDGLAASAASVIA 77 (160)
T ss_pred cCHHHHHHHHHhccCC-CCEEEEEECCCCCHHHHH----------HHH---HHHH---hcCCCEEEEEcchHHhHHHHHH
Confidence 4566788888888776 334555566554333321 111 1111 14566664
Q ss_pred ---------ecceeeccccccccCCCCc---------------cccchhhhcC--HHHHHHHHHcCCCCCHHHHHHcCcc
Q psy7339 119 ---------LQATFHTPFTLRGMTPEGC---------------SSVLFPRIFG--NSVASELLYTGRKLNAQEALQYGFV 172 (223)
Q Consensus 119 ---------~~a~f~~pe~~~Gl~p~~g---------------~~~~l~~~vg--~~~a~~l~l~g~~~~a~eA~~~Glv 172 (223)
++++|+++....+..+... ....+.+..| ....++++..+..++++||+++|||
T Consensus 78 ~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~Gli 157 (160)
T cd07016 78 MAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGFA 157 (160)
T ss_pred hcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCCC
Confidence 6788887666555443321 1233777788 6778888888888999999999999
Q ss_pred ccc
Q psy7339 173 SGV 175 (223)
Q Consensus 173 ~~v 175 (223)
|+|
T Consensus 158 D~v 160 (160)
T cd07016 158 DEI 160 (160)
T ss_pred CcC
Confidence 986
No 120
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=98.28 E-value=3.4e-06 Score=64.01 Aligned_cols=110 Identities=16% Similarity=0.048 Sum_probs=66.4
Q ss_pred chHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhhhhHHHHhHHHHhhhhhcccceee-------------
Q psy7339 52 STFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFV------------- 118 (223)
Q Consensus 52 s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ia------------- 118 (223)
+.+..++.+.++.++.+++++.|+++. .|.|.+... ...+.+.+. .+++|+++
T Consensus 10 ~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~----~~~i~~~l~------~~~kpvva~~~g~~~s~g~~l 75 (161)
T cd00394 10 DVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDA----GMNIVDALQ------ASRKPVIAYVGGQAASAGYYI 75 (161)
T ss_pred cchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHH----HHHHHHHHH------HhCCCEEEEECChhHHHHHHH
Confidence 367889999999999999999998864 345543321 111221111 25677776
Q ss_pred ---ecceeeccccccccCCCCcccc--------------------chhh------hcCHHHHHHHHHcCCCCCHHHHHHc
Q psy7339 119 ---LQATFHTPFTLRGMTPEGCSSV--------------------LFPR------IFGNSVASELLYTGRKLNAQEALQY 169 (223)
Q Consensus 119 ---~~a~f~~pe~~~Gl~p~~g~~~--------------------~l~~------~vg~~~a~~l~l~g~~~~a~eA~~~ 169 (223)
-+-++..|...+|+..+..... .+.. .+......+.+..+..++++||+++
T Consensus 76 a~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~ 155 (161)
T cd00394 76 ATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEY 155 (161)
T ss_pred HhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHc
Confidence 2334444444444433222111 1111 1233446777888999999999999
Q ss_pred Cccccc
Q psy7339 170 GFVSGV 175 (223)
Q Consensus 170 Glv~~v 175 (223)
||||++
T Consensus 156 GLvD~i 161 (161)
T cd00394 156 GLVDAL 161 (161)
T ss_pred CCcCcC
Confidence 999985
No 121
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=98.01 E-value=7.8e-05 Score=59.69 Aligned_cols=58 Identities=14% Similarity=0.077 Sum_probs=40.1
Q ss_pred ccchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhhhhHHHHhHHHHhhhhhcccceee
Q psy7339 50 NASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFV 118 (223)
Q Consensus 50 ~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ia 118 (223)
.....+.++.+.++.+.+|+++++||++..+.+| ++.+ .+.+.+.++.+.. .+||+|+
T Consensus 26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~-------~~el~~~i~~~~~---~~kpVia 83 (222)
T cd07018 26 SSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAK-------LEELRQALERFRA---SGKPVIA 83 (222)
T ss_pred cCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHH-------HHHHHHHHHHHHH---hCCeEEE
Confidence 3456788999999999999999999999887776 3322 2233333333322 5788886
No 122
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=97.76 E-value=0.00022 Score=56.77 Aligned_cols=28 Identities=11% Similarity=-0.122 Sum_probs=24.8
Q ss_pred cchHHHHHHHHHHHHHhcCCCeEEEEcC
Q psy7339 51 ASTFALEMKEIAHIIQFLTPRSLILVDE 78 (223)
Q Consensus 51 ~s~~~~el~~~~~~l~~~~~~~vvvl~~ 78 (223)
...++.++.+.++.+++|+++++|+++.
T Consensus 23 ~~~~~~~l~~~l~~a~~d~~i~~Vvl~~ 50 (214)
T cd07022 23 GLTSYEGIAAAIRAALADPDVRAIVLDI 50 (214)
T ss_pred CcccHHHHHHHHHHHhhCCCCcEEEEEE
Confidence 3467899999999999999999999974
No 123
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=97.74 E-value=0.00025 Score=56.11 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=27.3
Q ss_pred HHcCCCCCHHHHHHcCccccccCChhHHHhHHH
Q psy7339 155 LYTGRKLNAQEALQYGFVSGVFTTEEIERDLWP 187 (223)
Q Consensus 155 ~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~ 187 (223)
++.|+.+++++|++.||||++...+++.+...+
T Consensus 172 ~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~~ 204 (207)
T TIGR00706 172 FADGRVFTGRQALKLRLVDKLGTEDDALKWLAE 204 (207)
T ss_pred HhcCCcccHHHHHHcCCCcccCCHHHHHHHHHH
Confidence 468899999999999999999887776655444
No 124
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=97.56 E-value=0.00054 Score=54.23 Aligned_cols=57 Identities=9% Similarity=-0.014 Sum_probs=38.7
Q ss_pred cchHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhhhhHHHHhHHHHhhhhhcccceee
Q psy7339 51 ASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFV 118 (223)
Q Consensus 51 ~s~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ia 118 (223)
.+.+..++.+.++.+++++++++|+++.. |+|.+.... +.+.+.+..+. .+++|+|+
T Consensus 15 ~~~~~~~l~~~l~~a~~d~~i~~ivl~~~----s~Gg~~~~~----~~i~~~i~~~~---~~~kpvia 71 (208)
T cd07023 15 GGIGADSLIEQLRKAREDDSVKAVVLRIN----SPGGSVVAS----EEIYREIRRLR---KAKKPVVA 71 (208)
T ss_pred CCCCHHHHHHHHHHHHhCCCCcEEEEEEE----CCCCCHHHH----HHHHHHHHHHH---hcCCcEEE
Confidence 35788999999999999999999999873 566554321 22222222222 26888886
No 125
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=97.40 E-value=0.0012 Score=50.21 Aligned_cols=108 Identities=14% Similarity=0.143 Sum_probs=64.2
Q ss_pred chHHHHHHHHHHHHHhcCCCe--EEEEcCCCCCcCCCCCCCcchhhhhHHHHhHHHHhhhhhcccceee-----------
Q psy7339 52 STFALEMKEIAHIIQFLTPRS--LILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFV----------- 118 (223)
Q Consensus 52 s~~~~el~~~~~~l~~~~~~~--vvvl~~~g~~F~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ia----------- 118 (223)
....+++.+.+..++.+++.+ .+.+++.|....+| ..+.+.++. .+.|+++
T Consensus 11 ~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~----------~~i~~~i~~------~~~~v~~~~~g~aaS~~~ 74 (162)
T cd07013 11 DISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAG----------MAIYDTIKF------IKADVVTIIDGLAASMGS 74 (162)
T ss_pred cHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHH----------HHHHHHHHh------cCCCceEEEEeehhhHHH
Confidence 356667778888888776543 44456655432222 111111121 3344443
Q ss_pred -------ecceeeccccccccCCCCcccc----------------------chhhhcC--HHHHHHHHHcCCCCCHHHHH
Q psy7339 119 -------LQATFHTPFTLRGMTPEGCSSV----------------------LFPRIFG--NSVASELLYTGRKLNAQEAL 167 (223)
Q Consensus 119 -------~~a~f~~pe~~~Gl~p~~g~~~----------------------~l~~~vg--~~~a~~l~l~g~~~~a~eA~ 167 (223)
.+.++.+|..++++.+++++.. .+.+.-| ....++++-.+.-++|+||+
T Consensus 75 ~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~ 154 (162)
T cd07013 75 VIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAV 154 (162)
T ss_pred HHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHH
Confidence 2368999999999887665432 2222333 34455566666667999999
Q ss_pred HcCccccc
Q psy7339 168 QYGFVSGV 175 (223)
Q Consensus 168 ~~Glv~~v 175 (223)
++||||++
T Consensus 155 ~~GliD~i 162 (162)
T cd07013 155 EYGFADTI 162 (162)
T ss_pred HcCCCCcC
Confidence 99999985
No 126
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=97.06 E-value=0.0044 Score=48.77 Aligned_cols=60 Identities=17% Similarity=0.130 Sum_probs=45.2
Q ss_pred ecceeeccccccccCCCCccc----------------------cchhhhcC--HHHHHHHHHcCCCCCHHHHHHcCcccc
Q psy7339 119 LQATFHTPFTLRGMTPEGCSS----------------------VLFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSG 174 (223)
Q Consensus 119 ~~a~f~~pe~~~Gl~p~~g~~----------------------~~l~~~vg--~~~a~~l~l~g~~~~a~eA~~~Glv~~ 174 (223)
.+.++.+|+.++++.++++++ ..+....| .....+++-.+..++|+||+++||||+
T Consensus 113 ~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~ 192 (200)
T PRK00277 113 KGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDE 192 (200)
T ss_pred CCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccccHHHHHHcCCccE
Confidence 356899999999999776543 22344444 355666666777899999999999999
Q ss_pred ccCC
Q psy7339 175 VFTT 178 (223)
Q Consensus 175 v~~~ 178 (223)
|+..
T Consensus 193 Ii~~ 196 (200)
T PRK00277 193 VLTK 196 (200)
T ss_pred Eeec
Confidence 9864
No 127
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=96.62 E-value=0.015 Score=45.75 Aligned_cols=60 Identities=22% Similarity=0.208 Sum_probs=42.8
Q ss_pred cceeeccccccccCCCCcc-----------------------ccchhhhcCH--HHHHHHHHcCCCCCHHHHHHcCcccc
Q psy7339 120 QATFHTPFTLRGMTPEGCS-----------------------SVLFPRIFGN--SVASELLYTGRKLNAQEALQYGFVSG 174 (223)
Q Consensus 120 ~a~f~~pe~~~Gl~p~~g~-----------------------~~~l~~~vg~--~~a~~l~l~g~~~~a~eA~~~Glv~~ 174 (223)
+.++.+|..++.+..+.++ ...+....|. ....+++-...-++|+||+++||||+
T Consensus 113 g~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~ 192 (200)
T CHL00028 113 TKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMERDVFMSATEAKAYGIVDL 192 (200)
T ss_pred CCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCCcE
Confidence 3589999999998876654 1233333442 34455556667799999999999999
Q ss_pred ccCCh
Q psy7339 175 VFTTE 179 (223)
Q Consensus 175 v~~~~ 179 (223)
|+.+.
T Consensus 193 I~~~~ 197 (200)
T CHL00028 193 VAVNN 197 (200)
T ss_pred EeecC
Confidence 98653
No 128
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=96.34 E-value=0.03 Score=44.31 Aligned_cols=111 Identities=14% Similarity=0.113 Sum_probs=67.4
Q ss_pred chHHHHHHHHHHHHHhcCC--CeEEEEcCCCCCcCCCCCCCcchhhhhHHHHhHHHHhhhhhcccceee-----------
Q psy7339 52 STFALEMKEIAHIIQFLTP--RSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFV----------- 118 (223)
Q Consensus 52 s~~~~el~~~~~~l~~~~~--~~vvvl~~~g~~F~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ia----------- 118 (223)
.....++.+.+..++..+. .-.+.+.+.|....+|. .+.+.++. .+.|+++
T Consensus 46 ~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~----------~I~d~i~~------~~~~v~t~~~G~aaSaa~ 109 (207)
T PRK12553 46 DASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGD----------AIYDTIQF------IRPDVQTVCTGQAASAGA 109 (207)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHH----------HHHHHHHh------cCCCcEEEEEeehhhHHH
Confidence 4566777777777776542 34555566664433331 11111111 2333332
Q ss_pred ------e-cceeeccccccccCCCC--cc----------------------ccchhhhcC--HHHHHHHHHcCCCCCHHH
Q psy7339 119 ------L-QATFHTPFTLRGMTPEG--CS----------------------SVLFPRIFG--NSVASELLYTGRKLNAQE 165 (223)
Q Consensus 119 ------~-~a~f~~pe~~~Gl~p~~--g~----------------------~~~l~~~vg--~~~a~~l~l~g~~~~a~e 165 (223)
+ +-++..|...+++..+. ++ ...+...-| .....+++-.+..++|+|
T Consensus 110 lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~~~lta~E 189 (207)
T PRK12553 110 VLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRDKWLTAEE 189 (207)
T ss_pred HHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcCccccHHH
Confidence 2 24788899988888665 31 122334444 355666777888999999
Q ss_pred HHHcCccccccCC
Q psy7339 166 ALQYGFVSGVFTT 178 (223)
Q Consensus 166 A~~~Glv~~v~~~ 178 (223)
|+++||||+|+..
T Consensus 190 A~e~GliD~I~~~ 202 (207)
T PRK12553 190 AKDYGLVDQIITS 202 (207)
T ss_pred HHHcCCccEEcCc
Confidence 9999999999965
No 129
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=96.07 E-value=0.039 Score=42.57 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=19.5
Q ss_pred CCCHHHHHHcCccccccCC-hhHH
Q psy7339 160 KLNAQEALQYGFVSGVFTT-EEIE 182 (223)
Q Consensus 160 ~~~a~eA~~~Glv~~v~~~-~~l~ 182 (223)
.++++||++.|++|.+.+. ++|+
T Consensus 153 ~lta~eA~~~g~~d~ia~~~~~ll 176 (178)
T cd07021 153 TLTADEALKVGYAEGIAGSLDELL 176 (178)
T ss_pred eeCHHHHHHhCCeEEEECCHHHHh
Confidence 7999999999999999875 4444
No 130
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=96.06 E-value=0.066 Score=41.05 Aligned_cols=35 Identities=29% Similarity=0.471 Sum_probs=28.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCccccccCC-hhHH
Q psy7339 148 NSVASELLYTGRKLNAQEALQYGFVSGVFTT-EEIE 182 (223)
Q Consensus 148 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~l~ 182 (223)
..++..++-....++++||+++|++|.+++. ++|+
T Consensus 135 ~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~~~ll 170 (172)
T cd07015 135 ATIAEEFITKDLSLTPEEALKYGVIEVVARDINELL 170 (172)
T ss_pred HHHHHHHHHhhcCcCHHHHHHcCCceeeeCCHHHHh
Confidence 3667778888889999999999999999976 4444
No 131
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=96.05 E-value=0.061 Score=42.22 Aligned_cols=63 Identities=19% Similarity=0.170 Sum_probs=40.8
Q ss_pred cceeeccccccccCCCCcccc----------------------chhhhcC--HHHHHHHHHcCCCCCHHHHHHcCccccc
Q psy7339 120 QATFHTPFTLRGMTPEGCSSV----------------------LFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGV 175 (223)
Q Consensus 120 ~a~f~~pe~~~Gl~p~~g~~~----------------------~l~~~vg--~~~a~~l~l~g~~~~a~eA~~~Glv~~v 175 (223)
..++.+|..++.+.-++++.. .+....| .....+++-....++|+||+++||||+|
T Consensus 106 ~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta~EA~~yGliD~I 185 (197)
T PRK14512 106 ESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFWLDSSSAVKYGLVFEV 185 (197)
T ss_pred CceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCHHHHHHcCCccEe
Confidence 457888888887775554331 0122222 2334445455567999999999999999
Q ss_pred cCC-hhHH
Q psy7339 176 FTT-EEIE 182 (223)
Q Consensus 176 ~~~-~~l~ 182 (223)
++. +++.
T Consensus 186 ~~~~~~l~ 193 (197)
T PRK14512 186 VETRLELE 193 (197)
T ss_pred ecCcHHhH
Confidence 975 4444
No 132
>PRK10949 protease 4; Provisional
Probab=95.67 E-value=0.098 Score=48.15 Aligned_cols=35 Identities=14% Similarity=0.117 Sum_probs=27.9
Q ss_pred HHcCCCCCHHHHHHcCccccccCChhHHHhHHHHH
Q psy7339 155 LYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRI 189 (223)
Q Consensus 155 ~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a 189 (223)
+..|+.|++++|++.||||++-..++..+.+.+++
T Consensus 506 ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~~a 540 (618)
T PRK10949 506 IAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELA 540 (618)
T ss_pred HhcCCcccHHHHHHcCCCccCCCHHHHHHHHHHHc
Confidence 56899999999999999999987666555555543
No 133
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=95.60 E-value=0.11 Score=40.68 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=40.8
Q ss_pred ecceeeccccccccCCCCccccchh----------------------hhcCHHHH--HHHHHcCCCCCHHHHHHcCcccc
Q psy7339 119 LQATFHTPFTLRGMTPEGCSSVLFP----------------------RIFGNSVA--SELLYTGRKLNAQEALQYGFVSG 174 (223)
Q Consensus 119 ~~a~f~~pe~~~Gl~p~~g~~~~l~----------------------~~vg~~~a--~~l~l~g~~~~a~eA~~~Glv~~ 174 (223)
.+-+|++|..++=+.++.|+.+=-+ ..-|.... ....-....++|+||+++||||+
T Consensus 109 ~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~ 188 (200)
T COG0740 109 KGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDK 188 (200)
T ss_pred CCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcce
Confidence 3556999999999999998774221 22222111 11122334589999999999999
Q ss_pred ccCChh
Q psy7339 175 VFTTEE 180 (223)
Q Consensus 175 v~~~~~ 180 (223)
|....+
T Consensus 189 V~~~~~ 194 (200)
T COG0740 189 VIESRE 194 (200)
T ss_pred eccccc
Confidence 987543
No 134
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=95.44 E-value=0.16 Score=39.79 Aligned_cols=60 Identities=12% Similarity=0.031 Sum_probs=40.7
Q ss_pred cceeeccccccccCCCCcccc----------------------chhhhcCH--HHHHHHHHcCCCCCHHHHHHcCccccc
Q psy7339 120 QATFHTPFTLRGMTPEGCSSV----------------------LFPRIFGN--SVASELLYTGRKLNAQEALQYGFVSGV 175 (223)
Q Consensus 120 ~a~f~~pe~~~Gl~p~~g~~~----------------------~l~~~vg~--~~a~~l~l~g~~~~a~eA~~~Glv~~v 175 (223)
..++.+|..++.+..++++.+ .+.+..|. ....+++-....++|+||+++||||+|
T Consensus 108 ~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~msa~EA~eyGliD~I 187 (196)
T PRK12551 108 GKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLV 187 (196)
T ss_pred CceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcCCCHHHHHHcCCCcEE
Confidence 347888888888888765431 12233332 334445555567999999999999999
Q ss_pred cCCh
Q psy7339 176 FTTE 179 (223)
Q Consensus 176 ~~~~ 179 (223)
++..
T Consensus 188 ~~~~ 191 (196)
T PRK12551 188 IDKR 191 (196)
T ss_pred eccC
Confidence 9753
No 135
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=95.37 E-value=0.16 Score=40.55 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=40.7
Q ss_pred cceeeccccccccCCCCcccc----------------------chhhhcCH--HHHHHHHHcCCCCCHHHHHHcCccccc
Q psy7339 120 QATFHTPFTLRGMTPEGCSSV----------------------LFPRIFGN--SVASELLYTGRKLNAQEALQYGFVSGV 175 (223)
Q Consensus 120 ~a~f~~pe~~~Gl~p~~g~~~----------------------~l~~~vg~--~~a~~l~l~g~~~~a~eA~~~Glv~~v 175 (223)
..++.+|..++.+.-++++.. .+....|. ....+.+-....++|+||+++||||+|
T Consensus 137 gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~~~~rd~wmtA~EA~eyGliD~V 216 (221)
T PRK14514 137 GKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEV 216 (221)
T ss_pred CceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCccCCHHHHHHcCCccEE
Confidence 347899999999888776431 12223342 344555556677999999999999999
Q ss_pred cC
Q psy7339 176 FT 177 (223)
Q Consensus 176 ~~ 177 (223)
+.
T Consensus 217 i~ 218 (221)
T PRK14514 217 LI 218 (221)
T ss_pred ee
Confidence 85
No 136
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=95.04 E-value=0.23 Score=40.58 Aligned_cols=63 Identities=21% Similarity=0.250 Sum_probs=45.4
Q ss_pred cccceee----------------ecceeeccccccccCCCCccccchhhhcC-HHHHHHHHHcCCCCCHHHHHHcCcccc
Q psy7339 112 LNHPVFV----------------LQATFHTPFTLRGMTPEGCSSVLFPRIFG-NSVASELLYTGRKLNAQEALQYGFVSG 174 (223)
Q Consensus 112 ~~~p~ia----------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg-~~~a~~l~l~g~~~~a~eA~~~Glv~~ 174 (223)
..+|.|+ .+-.+.+|...+++.++-+.+..+.+--. ...+.+.+ .+++.++++.|+||+
T Consensus 135 ~~VP~IsVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~ 210 (256)
T PRK12319 135 LKVPIIAIIIGEGGSGGALALAVADQVWMLENTMYAVLSPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVDK 210 (256)
T ss_pred CCCCEEEEEeCCcCcHHHHHhhcCCEEEEecCceEEEcCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCcE
Confidence 6788886 45678888888888888777766654321 12233333 779999999999999
Q ss_pred ccCC
Q psy7339 175 VFTT 178 (223)
Q Consensus 175 v~~~ 178 (223)
|+|+
T Consensus 211 ii~e 214 (256)
T PRK12319 211 VIPE 214 (256)
T ss_pred ecCC
Confidence 9974
No 137
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=94.99 E-value=0.71 Score=42.93 Aligned_cols=141 Identities=9% Similarity=0.023 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhhhhHHHHhHHHHhhhhhcccceee----------------
Q psy7339 55 ALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFV---------------- 118 (223)
Q Consensus 55 ~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ia---------------- 118 (223)
++-..++.+.++...---+-+++..| +..|...+.. ...+.+.+. +.......+|+|+
T Consensus 228 yRKAlRlmkLAekfgLPIVtLVDTpG--A~pG~~AEe~-Gq~~aIArn---l~amasl~VP~ISVViGeggSGGAlA~g~ 301 (762)
T PLN03229 228 YRKALRMMYYADHHGFPIVTFIDTPG--AYADLKSEEL-GQGEAIAHN---LRTMFGLKVPIVSIVIGEGGSGGALAIGC 301 (762)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCC--cCCCchhHHH-hHHHHHHHH---HHHHhCCCCCEEEEEeCCcchHHHHHhhc
Confidence 34444555555544333455556554 2334332211 111222222 2222236788886
Q ss_pred ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCCCCHHHHHHcCccccccCCh-------------hHHHhH
Q psy7339 119 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE-------------EIERDL 185 (223)
Q Consensus 119 ~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~-------------~l~~~a 185 (223)
.+-.+.+|...+++.++-|++..+.+-. .+|.+ +...-+++|++.+++|+||+|+|.. .+.+..
T Consensus 302 aD~VlMle~A~~sVisPEgaAsILwkd~--~~A~e-AAe~lkiTa~dL~~lGiiD~IIpEp~ggAh~d~~~~~~~l~~~i 378 (762)
T PLN03229 302 ANKLLMLENAVFYVASPEACAAILWKSA--KAAPK-AAEKLRITAQELCRLQIADGIIPEPLGGAHADPSWTSQQIKIAI 378 (762)
T ss_pred CCEEEEecCCeEEecCHHHHHHHHhcCc--ccHHH-HHHHcCCCHHHHHhCCCCeeeccCCCCccccCHHHHHHHHHHHH
Confidence 3557778888888888887776665532 23333 2445689999999999999999842 122333
Q ss_pred HHHHHHHhhcchHHHHHHH
Q psy7339 186 WPRIHAWAKLSSCIVSLLA 204 (223)
Q Consensus 186 ~~~a~~l~~~~~~a~~~~K 204 (223)
.+....+...++..+...+
T Consensus 379 ~~~L~~l~~~~~~~l~~~R 397 (762)
T PLN03229 379 NENMDELGKMDTEELLKHR 397 (762)
T ss_pred HHHHHHHHCCCHHHHHHHH
Confidence 4444455556665554444
No 138
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=94.95 E-value=0.13 Score=39.42 Aligned_cols=55 Identities=15% Similarity=0.203 Sum_probs=37.7
Q ss_pred ceeeccccccccCCCCcccc----------------------chhhhcCH--HHHHHHHHcCCCCCHHHHHHcCccccc
Q psy7339 121 ATFHTPFTLRGMTPEGCSSV----------------------LFPRIFGN--SVASELLYTGRKLNAQEALQYGFVSGV 175 (223)
Q Consensus 121 a~f~~pe~~~Gl~p~~g~~~----------------------~l~~~vg~--~~a~~l~l~g~~~~a~eA~~~Glv~~v 175 (223)
-++..|...+++..+.++.. .+....|. ....+++-.+.-++|+||+++|+||+|
T Consensus 93 ~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 93 KRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred CEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence 57788888887776554321 12233332 355566667888999999999999986
No 139
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=94.85 E-value=0.26 Score=41.50 Aligned_cols=65 Identities=14% Similarity=0.184 Sum_probs=49.4
Q ss_pred hcccceee----------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCCCCHHHHHHcCcccc
Q psy7339 111 LLNHPVFV----------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSG 174 (223)
Q Consensus 111 ~~~~p~ia----------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~ 174 (223)
...+|+|+ .+-.+.+|...+++.++-|++..+.+- ..++.+..- ...++++++++.|+||+
T Consensus 187 ~~~VP~IsVIiGeg~sGGAla~~~aD~v~m~~~A~~svisPEg~a~Il~~~--~~~a~~aae-~~~ita~~l~~~g~iD~ 263 (319)
T PRK05724 187 RLKVPIICTVIGEGGSGGALAIGVGDRVLMLEYSTYSVISPEGCASILWKD--ASKAPEAAE-AMKITAQDLKELGIIDE 263 (319)
T ss_pred CCCCCEEEEEeCCccHHHHHHHhccCeeeeecCceEeecCHHHHHHHHhcC--chhHHHHHH-HcCCCHHHHHHCCCceE
Confidence 37788886 456788899999998888887766653 233444433 66799999999999999
Q ss_pred ccCC
Q psy7339 175 VFTT 178 (223)
Q Consensus 175 v~~~ 178 (223)
|+|.
T Consensus 264 II~E 267 (319)
T PRK05724 264 IIPE 267 (319)
T ss_pred eccC
Confidence 9974
No 140
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=94.67 E-value=0.26 Score=41.47 Aligned_cols=65 Identities=5% Similarity=0.154 Sum_probs=48.5
Q ss_pred hcccceee----------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCCCCHHHHHHcCcccc
Q psy7339 111 LLNHPVFV----------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSG 174 (223)
Q Consensus 111 ~~~~p~ia----------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~ 174 (223)
...+|+|+ .+-.+.++...+++.+|-|++..+.+- ..+|.+. ...-+++|++.++.|+||+
T Consensus 190 ~~~VP~IsVViGeggsGGAlal~~aD~V~m~e~a~~sVisPEg~a~Il~~d--~~~a~~a-A~~~~ita~dL~~~giiD~ 266 (322)
T CHL00198 190 SFEVPIICTIIGEGGSGGALGIGIGDSIMMLEYAVYTVATPEACAAILWKD--SKKSLDA-AEALKITSEDLKVLGIIDE 266 (322)
T ss_pred cCCCCEEEEEeCcccHHHHHhhhcCCeEEEeCCeEEEecCHHHHHHHHhcc--hhhHHHH-HHHcCCCHHHHHhCCCCeE
Confidence 36788886 456778888888888887777666553 3344443 4456899999999999999
Q ss_pred ccCC
Q psy7339 175 VFTT 178 (223)
Q Consensus 175 v~~~ 178 (223)
|+|.
T Consensus 267 ii~E 270 (322)
T CHL00198 267 IIPE 270 (322)
T ss_pred eccC
Confidence 9973
No 141
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=94.40 E-value=0.3 Score=42.41 Aligned_cols=91 Identities=10% Similarity=0.113 Sum_probs=57.2
Q ss_pred hcccceee----------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCCCCHHHHHHcCcccc
Q psy7339 111 LLNHPVFV----------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSG 174 (223)
Q Consensus 111 ~~~~p~ia----------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~ 174 (223)
.+.+|+|+ .+-.+.++...+++.++-+++..+.+-- .+|.+.. ..-.++|+++++.|+||+
T Consensus 257 ~l~VPiISVViGeGgSGGAlalg~aD~VlMle~A~ysVisPEgaAsILwkd~--~~A~eAA-ealkitA~dL~~~GiID~ 333 (431)
T PLN03230 257 GLRVPIIATVIGEGGSGGALAIGCGNRMLMMENAVYYVASPEACAAILWKSA--AAAPKAA-EALRITAAELVKLGVVDE 333 (431)
T ss_pred cCCCCEEEEEeCCCCcHHHHHhhcCCEEEEecCCEEEecCHHHHHHHHhccc--cchHHHH-HHcCCCHHHHHhCCCCeE
Confidence 36788886 3457778888888888777766665432 2222221 244899999999999999
Q ss_pred ccCCh------h-------HHHhHHHHHHHHhhcchHHHHHHH
Q psy7339 175 VFTTE------E-------IERDLWPRIHAWAKLSSCIVSLLA 204 (223)
Q Consensus 175 v~~~~------~-------l~~~a~~~a~~l~~~~~~a~~~~K 204 (223)
|+|.. + +.+...+...+|...++..+...+
T Consensus 334 II~Ep~ggAh~d~~~~~~~l~~~i~~~l~~L~~~~~~~l~~~R 376 (431)
T PLN03230 334 IVPEPLGGAHSDPLQASKNIKEVILRHMKELMKMDPEELLQDR 376 (431)
T ss_pred eccCCCCCcccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99741 1 223334444555566665554433
No 142
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=94.36 E-value=0.36 Score=40.61 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=46.4
Q ss_pred cccceee----------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCCCCHHHHHHcCccccc
Q psy7339 112 LNHPVFV----------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGV 175 (223)
Q Consensus 112 ~~~p~ia----------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~v 175 (223)
..+|+|+ .+-.+.+|...+++.++-++...+.+- ..++.+..- ...++++++++.|+||+|
T Consensus 188 ~~VP~IsVViGeggsGGAla~~~aD~v~m~~~a~~sVisPEg~a~Il~kd--~~~a~~aae-~~~~ta~~l~~~G~iD~I 264 (316)
T TIGR00513 188 LGVPVICTVIGEGGSGGALAIGVGDKVNMLEYSTYSVISPEGCAAILWKD--ASKAPKAAE-AMKITAPDLKELGLIDSI 264 (316)
T ss_pred CCCCEEEEEecccccHHHhhhccCCEEEEecCceEEecCHHHHHHHhccc--hhhHHHHHH-HccCCHHHHHHCCCCeEe
Confidence 6788886 355778888899988888777666543 222333222 367899999999999999
Q ss_pred cCC
Q psy7339 176 FTT 178 (223)
Q Consensus 176 ~~~ 178 (223)
+|.
T Consensus 265 I~e 267 (316)
T TIGR00513 265 IPE 267 (316)
T ss_pred ccC
Confidence 973
No 143
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=94.06 E-value=0.42 Score=37.28 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=38.9
Q ss_pred ceeeccccccccCCCCccc----------------------cchhhhcC--HHHHHHHHHcCCCCCHHHHHHcCcccccc
Q psy7339 121 ATFHTPFTLRGMTPEGCSS----------------------VLFPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVF 176 (223)
Q Consensus 121 a~f~~pe~~~Gl~p~~g~~----------------------~~l~~~vg--~~~a~~l~l~g~~~~a~eA~~~Glv~~v~ 176 (223)
-++..|...+++.-++++. ..+.+..| .....+++-.+..++|+||+++||||+|+
T Consensus 110 ~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii 189 (191)
T TIGR00493 110 KRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVL 189 (191)
T ss_pred cEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEe
Confidence 3677888888877554321 11333444 35556666677789999999999999987
Q ss_pred C
Q psy7339 177 T 177 (223)
Q Consensus 177 ~ 177 (223)
.
T Consensus 190 ~ 190 (191)
T TIGR00493 190 T 190 (191)
T ss_pred c
Confidence 4
No 144
>KOG1683|consensus
Probab=93.85 E-value=0.023 Score=48.12 Aligned_cols=148 Identities=13% Similarity=-0.031 Sum_probs=91.6
Q ss_pred ccchHHHHHHHHHHHHHhcCCCeEEEEcCCC-CCcCCCCCCCc--------chhhhhHHHHhHHHHhh-------hhh--
Q psy7339 50 NASTFALEMKEIAHIIQFLTPRSLILVDELC-RAGIEPPPSCL--------PGERLDHYARTTEQVKN-------RVL-- 111 (223)
Q Consensus 50 ~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g-~~F~aG~~~~~--------~~~~~~~~~~~~~~~~~-------~~~-- 111 (223)
.+-++..++..-++.++.+..+++..+|+.. +-|++|-+... .......+.+.+..... .+.
T Consensus 79 edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~ 158 (380)
T KOG1683|consen 79 EDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGG 158 (380)
T ss_pred hhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcc
Confidence 3455666676777777777778889998877 77999965532 12222222222222111 110
Q ss_pred ---cccceee------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCCCCHHHHHHcCcccccc
Q psy7339 112 ---LNHPVFV------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVF 176 (223)
Q Consensus 112 ---~~~p~ia------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~v~ 176 (223)
-..|++. ..-..+..+...++..+.+-...+....|...+-.-+-.+.-++..||++.|+++++.
T Consensus 159 ~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fGf~~g~~~L~d~~gfdv~eal~~gl~~~~~ 238 (380)
T KOG1683|consen 159 SPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFGFRVGERALADGVGFDVAEALAVGLGDEIG 238 (380)
T ss_pred cccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcCccccHHHHhhccCccHHHHHhhccchhcc
Confidence 1123333 1122244566677444455555666778888888888899999999999999999999
Q ss_pred C--ChhHHHhHHHHHHHHhhcch
Q psy7339 177 T--TEEIERDLWPRIHAWAKLSS 197 (223)
Q Consensus 177 ~--~~~l~~~a~~~a~~l~~~~~ 197 (223)
| .+++.+..+..........+
T Consensus 239 ~r~~eel~~~~~~g~kT~kg~y~ 261 (380)
T KOG1683|consen 239 PRIEEELLEKGRAGIKTGKGIYP 261 (380)
T ss_pred chhHHHHHHHHhhhhhccCcccc
Confidence 9 46676666665555443333
No 145
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.77 E-value=0.051 Score=41.56 Aligned_cols=137 Identities=15% Similarity=0.113 Sum_probs=65.1
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCC-cceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPAS-LAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDEL 79 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~-~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~ 79 (223)
.||||+|....... ..+-.+|+... .+..+.-.+|-.+...+++ .-..-++..++.+. +++.+...+|++|+.
T Consensus 9 ~sGKS~~a~~~~~~--~~~~~~y~at~~~~d~em~~rI~~H~~~R~~-~w~t~E~~~~l~~~---l~~~~~~~~VLIDcl 82 (169)
T cd00544 9 RSGKSRFAERLAAE--LGGPVTYIATAEAFDDEMAERIARHRKRRPA-HWRTIETPRDLVSA---LKELDPGDVVLIDCL 82 (169)
T ss_pred CCCHHHHHHHHHHh--cCCCeEEEEccCcCCHHHHHHHHHHHHhCCC-CceEeecHHHHHHH---HHhcCCCCEEEEEcH
Confidence 48999999887643 12223444322 2223333444222222211 11122333444444 433334558999986
Q ss_pred CCCcCCCCCCCcchhhhhHHHHhHHHHhhhhh-cccceeeecceeeccccccccCCCCccccchhhhcCHH
Q psy7339 80 CRAGIEPPPSCLPGERLDHYARTTEQVKNRVL-LNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNS 149 (223)
Q Consensus 80 g~~F~aG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ia~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~ 149 (223)
+.-.+.-....... ..+.+......+...+. .+.++ .|--.|+..|++|....+..+.+.+|.-
T Consensus 83 t~~~~n~l~~~~~~-~~~~~~~~i~~l~~~l~~~~~~~-----viVsnEvG~g~vp~~~~~r~f~d~lG~l 147 (169)
T cd00544 83 TLWVTNLLFADLEE-WEAAIADEIDALLAAVRNKPGTL-----ILVSNEVGLGVVPENALGRRFRDELGRL 147 (169)
T ss_pred hHHHHHhCCCcccc-chhHHHHHHHHHHHHHHcCCCcE-----EEEECCcCCCCCCCCHHHHHHHHHHHHH
Confidence 53222211110000 00111222222222221 33333 4555799999999999998888888863
No 146
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=93.54 E-value=0.22 Score=40.30 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=48.4
Q ss_pred cccceee-----------------ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcC--CCCCHHHHHHcCcc
Q psy7339 112 LNHPVFV-----------------LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTG--RKLNAQEALQYGFV 172 (223)
Q Consensus 112 ~~~p~ia-----------------~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g--~~~~a~eA~~~Glv 172 (223)
..+|+|+ .+..+.+|...++..++-++...+.+-. ..+.++.-.- -..+++.+.+.|+|
T Consensus 106 ~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i~vm~~e~aa~I~~~~~--~~~~e~a~~~~~~a~~~~~~~~~G~v 183 (238)
T TIGR03134 106 AGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMVHVMDLESMARVTKRSV--EELEALAKSSPVFAPGIENFVKLGGV 183 (238)
T ss_pred CCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEEEecCHHHHHHHHccCH--hHHHHHHHhhhhhccCHHHHHhCCCc
Confidence 5699986 4568889999999988888776665444 3344443332 24677889999999
Q ss_pred ccccCChh
Q psy7339 173 SGVFTTEE 180 (223)
Q Consensus 173 ~~v~~~~~ 180 (223)
|+|+++.+
T Consensus 184 d~vi~~~~ 191 (238)
T TIGR03134 184 HALLDVAD 191 (238)
T ss_pred cEEeCCCC
Confidence 99998655
No 147
>PRK10949 protease 4; Provisional
Probab=93.00 E-value=2.6 Score=39.02 Aligned_cols=56 Identities=9% Similarity=0.077 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhhhhHHHHhHHHHhhhhhcccceee
Q psy7339 53 TFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFV 118 (223)
Q Consensus 53 ~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ia 118 (223)
..+.++.+.++.+.+|+.++.|+++-.+.+ |.. ...++++.+.+..+.. ..||++|
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~g---G~~----~a~~~eI~~ai~~fk~---sGKpVvA 150 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNFA---GAD----QPSMQYIGKALREFRD---SGKPVYA 150 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCCC---Ccc----HHHHHHHHHHHHHHHH---hCCeEEE
Confidence 345688899999999999999999854211 111 1223444444444443 4688886
No 148
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=92.77 E-value=0.72 Score=38.09 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=31.5
Q ss_pred ccCCCCccccchhhhcCHHHHHHHHHcCCCCCHHHHHHcCccccccCC
Q psy7339 131 GMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT 178 (223)
Q Consensus 131 Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~ 178 (223)
-+++|-|++..|.+ ...+|.+. -..-.++|++.+++|+||.|+|.
T Consensus 222 SVisPEG~AsILWk--D~~ka~eA-Ae~mkita~dLk~lgiID~II~E 266 (317)
T COG0825 222 SVISPEGCASILWK--DASKAKEA-AEAMKITAHDLKELGIIDGIIPE 266 (317)
T ss_pred eecChhhhhhhhhc--ChhhhHHH-HHHcCCCHHHHHhCCCcceeccC
Confidence 34455555555554 34555554 34568999999999999999985
No 149
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=92.62 E-value=1.7 Score=34.69 Aligned_cols=120 Identities=13% Similarity=0.073 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHhcCC--CeEEEEcCCCCCcCCCCCCCcchhhhhHHHHhHHHHhhhhhcccceee-------------
Q psy7339 54 FALEMKEIAHIIQFLTP--RSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFV------------- 118 (223)
Q Consensus 54 ~~~el~~~~~~l~~~~~--~~vvvl~~~g~~F~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ia------------- 118 (223)
..+.+...+-.++..+. ---+-+.+.|....+|+.+....+.+. ..+.++.+ ..++-+++
T Consensus 53 ~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~~gla-IyD~m~~i----k~~V~Tv~~G~AaS~AslIl~ 127 (222)
T PRK12552 53 VTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFA-ICDTMRYI----KPPVHTICIGQAMGTAAMILS 127 (222)
T ss_pred HHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccccHHH-HHHHHHhc----CCCeEEEEEeehhhHHHHHHh
Confidence 55566666666654432 334556677766666643322111111 11111211 13333332
Q ss_pred ---ecceeeccccccccCCCCcccc----------------------chhhhcCH--HHHHHHHHcCCCCCHHHHHHcCc
Q psy7339 119 ---LQATFHTPFTLRGMTPEGCSSV----------------------LFPRIFGN--SVASELLYTGRKLNAQEALQYGF 171 (223)
Q Consensus 119 ---~~a~f~~pe~~~Gl~p~~g~~~----------------------~l~~~vg~--~~a~~l~l~g~~~~a~eA~~~Gl 171 (223)
..-++.+|..++=+..++++.+ .+....|. ..-.+.+-.-..++|+||+++||
T Consensus 128 aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGl 207 (222)
T PRK12552 128 AGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGL 207 (222)
T ss_pred CCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCC
Confidence 2347888988888877766542 11222221 22223333334599999999999
Q ss_pred cccccCC
Q psy7339 172 VSGVFTT 178 (223)
Q Consensus 172 v~~v~~~ 178 (223)
||+|+.+
T Consensus 208 iD~Ii~~ 214 (222)
T PRK12552 208 IDRVLES 214 (222)
T ss_pred CcEEecc
Confidence 9999864
No 150
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=92.46 E-value=1.7 Score=39.90 Aligned_cols=56 Identities=11% Similarity=0.023 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCCCCCCCcchhhhhHHHHhHHHHhhhhhcccceee
Q psy7339 53 TFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFV 118 (223)
Q Consensus 53 ~~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ia 118 (223)
....++.+.++.+..|+.++.|+++-.+ ..|... ...+++.+.+..+.+ ..|||+|
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~----~~~~ei~~ai~~fk~---sgKpVvA 131 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDS----PHLVEIGSALSEFKD---SGKPVYA 131 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCH----HHHHHHHHHHHHHHh---cCCeEEE
Confidence 3567899999999999999999998542 112221 123344444444433 4688886
No 151
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=91.39 E-value=0.087 Score=39.56 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=28.5
Q ss_pred HHcCCCCCHHHHHHcCccccccCChhHHHhHHHH
Q psy7339 155 LYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPR 188 (223)
Q Consensus 155 ~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~ 188 (223)
+..|..+++++|++.||||++-..+++.+.+.+.
T Consensus 117 ~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~ 150 (154)
T PF01343_consen 117 IADGGVFTAQQALELGLIDEIGTFDEAIARLAKL 150 (154)
T ss_dssp HHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHH
T ss_pred HHhhccccHHHHHHcCchhhcCCHHHHHHHHHHH
Confidence 5788999999999999999998877776665544
No 152
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=90.06 E-value=5.1 Score=33.47 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=29.5
Q ss_pred CHHHHHHcCccccccCChhHHHhHHHHHHHHhhcc
Q psy7339 162 NAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLS 196 (223)
Q Consensus 162 ~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~ 196 (223)
+++-+.+.|+||.|+++.++.+...++.+.+...+
T Consensus 250 ~ae~~~~~G~vD~Vv~~~e~r~~l~~~L~~~~~~~ 284 (292)
T PRK05654 250 RAEFLLEHGAIDMIVHRRELRDTLASLLALHTKQP 284 (292)
T ss_pred CHHHHHhCCCCcEEECHHHHHHHHHHHHHHHhcCC
Confidence 67778899999999999999988888888765544
No 153
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=88.82 E-value=6.5 Score=32.72 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=27.0
Q ss_pred CHHHHHHcCccccccCChhHHHhHHHHHHHHhh
Q psy7339 162 NAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 194 (223)
Q Consensus 162 ~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~ 194 (223)
+++-+.+.|+||.|+++.++.+...++.+.+..
T Consensus 249 ~ae~~~~~G~vD~iv~~~~~r~~l~~~L~~~~~ 281 (285)
T TIGR00515 249 TSEFLLEHGAIDMIVHRPEMKKTLASLLAKLQN 281 (285)
T ss_pred CHHHHHhCCCCcEEECcHHHHHHHHHHHHHHhh
Confidence 566688999999999999998888887776543
No 154
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=88.73 E-value=1.9 Score=30.46 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=43.9
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC 80 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g 80 (223)
++|||++++.++... |.+ +..+..++-.+.........+...++.+.......++++++..
T Consensus 8 G~GKT~l~~~la~~l-----~~~--------------~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d 68 (132)
T PF00004_consen 8 GTGKTTLARALAQYL-----GFP--------------FIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEID 68 (132)
T ss_dssp TSSHHHHHHHHHHHT-----TSE--------------EEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGG
T ss_pred CCCeeHHHHHHHhhc-----ccc--------------cccccccccccccccccccccccccccccccccceeeeeccch
Confidence 579999999988764 211 2223333333334556677788888887665546999999887
Q ss_pred CCcCCC
Q psy7339 81 RAGIEP 86 (223)
Q Consensus 81 ~~F~aG 86 (223)
..+...
T Consensus 69 ~l~~~~ 74 (132)
T PF00004_consen 69 KLFPKS 74 (132)
T ss_dssp GTSHHC
T ss_pred hccccc
Confidence 666555
No 155
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=86.83 E-value=0.66 Score=36.52 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=39.5
Q ss_pred ceeeccccccccCCCCcccc----------------------chhhhcCH--HHHHHHHHcCCCCCHHHHHHcCcccccc
Q psy7339 121 ATFHTPFTLRGMTPEGCSSV----------------------LFPRIFGN--SVASELLYTGRKLNAQEALQYGFVSGVF 176 (223)
Q Consensus 121 a~f~~pe~~~Gl~p~~g~~~----------------------~l~~~vg~--~~a~~l~l~g~~~~a~eA~~~Glv~~v~ 176 (223)
-++.+|..++-+..++++.. .+.+..|. ..-.+++-....++|+||+++||||+|+
T Consensus 111 kR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~msa~EA~eyGliD~I~ 190 (201)
T PRK14513 111 KRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSVI 190 (201)
T ss_pred cEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCcccCHHHHHHcCCCcEEe
Confidence 36888888888877765421 11223332 3344455555679999999999999999
Q ss_pred CCh
Q psy7339 177 TTE 179 (223)
Q Consensus 177 ~~~ 179 (223)
.+.
T Consensus 191 ~~~ 193 (201)
T PRK14513 191 EPT 193 (201)
T ss_pred ccC
Confidence 753
No 156
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=86.18 E-value=1.2 Score=35.28 Aligned_cols=27 Identities=22% Similarity=0.138 Sum_probs=18.1
Q ss_pred CCchhHHHHHHHHHHHHHh-hCCcccCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQ-VGCYVPAS 27 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~-~g~~vpa~ 27 (223)
.+|||+++.+++......+ -.+|+..+
T Consensus 33 GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 33 GSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 4799999999987665331 24455555
No 157
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=86.18 E-value=10 Score=34.40 Aligned_cols=75 Identities=11% Similarity=0.119 Sum_probs=49.7
Q ss_pred ecceeeccccccccCCCCccccchhhh-cC----HHHHHHH---HHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHH
Q psy7339 119 LQATFHTPFTLRGMTPEGCSSVLFPRI-FG----NSVASEL---LYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIH 190 (223)
Q Consensus 119 ~~a~f~~pe~~~Gl~p~~g~~~~l~~~-vg----~~~a~~l---~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~ 190 (223)
.+..|..|...+|+.++-+....+.+. +. +..+++- -+.-+..++..+.+.|+||.|+++.++.+...+..+
T Consensus 414 ~d~~~a~p~a~~~v~~pe~a~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~~l~ 493 (512)
T TIGR01117 414 ADQVYAWPTAEIAVMGPAGAANIIFRKDIKEAKDPAATRKQKIAEYREEFANPYKAAARGYVDDVIEPKQTRPKIVNALA 493 (512)
T ss_pred CCEEEEcCCCeEeecCHHHHHHHHhhhhcccccCHHHHHHHHHHHHHHhhcCHHHHHhcCCCCeeEChHHHHHHHHHHHH
Confidence 355888999999998877765444321 11 1111111 112235578899999999999999998887777776
Q ss_pred HHh
Q psy7339 191 AWA 193 (223)
Q Consensus 191 ~l~ 193 (223)
.+.
T Consensus 494 ~~~ 496 (512)
T TIGR01117 494 MLE 496 (512)
T ss_pred HHh
Confidence 544
No 158
>PRK11778 putative inner membrane peptidase; Provisional
Probab=85.66 E-value=0.96 Score=38.38 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=28.6
Q ss_pred HHHHcCCCCCHHHHHHcCccccccCChhHHHhHHH
Q psy7339 153 ELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWP 187 (223)
Q Consensus 153 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~ 187 (223)
+-+.+|+.+++++|++.||||++...+++...+.+
T Consensus 261 ~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~~ 295 (330)
T PRK11778 261 DKVATGEHWYGQQALELGLVDEIQTSDDYLLELMK 295 (330)
T ss_pred HHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHHh
Confidence 44568999999999999999999987777654444
No 159
>PF05729 NACHT: NACHT domain
Probab=85.26 E-value=1.2 Score=32.97 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=13.0
Q ss_pred CCchhHHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQI 16 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~ 16 (223)
++||||+++.+...+.
T Consensus 10 G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 10 GSGKSTLLRKLAQQLA 25 (166)
T ss_pred CCChHHHHHHHHHHHH
Confidence 5899999998876554
No 160
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=84.60 E-value=1 Score=35.88 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCCcC
Q psy7339 57 EMKEIAHIIQFLTPRSLILVDELCRAGI 84 (223)
Q Consensus 57 el~~~~~~l~~~~~~~vvvl~~~g~~F~ 84 (223)
-+.++.+.+.+.+..++||+|+....|.
T Consensus 102 ~l~~l~~~l~~~~~~~liVIDSis~~~~ 129 (235)
T cd01123 102 LLEELEAILIESSRIKLVIVDSVTALFR 129 (235)
T ss_pred HHHHHHHHHhhcCCeeEEEEeCcHHHHH
Confidence 3344445555555889999999875543
No 161
>smart00250 PLEC Plectin repeat.
Probab=84.00 E-value=0.9 Score=25.37 Aligned_cols=18 Identities=44% Similarity=0.756 Sum_probs=17.0
Q ss_pred cCCCCCHHHHHHcCcccc
Q psy7339 157 TGRKLNAQEALQYGFVSG 174 (223)
Q Consensus 157 ~g~~~~a~eA~~~Glv~~ 174 (223)
+|++++-.||.+.||++.
T Consensus 18 t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 18 TGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCcCHHHHHHcCCCCc
Confidence 899999999999999985
No 162
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=83.99 E-value=2.4 Score=33.43 Aligned_cols=18 Identities=28% Similarity=0.228 Sum_probs=14.6
Q ss_pred CCchhHHHHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQIMA 18 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~ 18 (223)
.+|||+++..++......
T Consensus 29 GsGKT~l~~~ia~~~~~~ 46 (226)
T cd01393 29 GSGKTQLCLQLAVEAQLP 46 (226)
T ss_pred CCChhHHHHHHHHHhhcc
Confidence 479999999998876544
No 163
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=83.95 E-value=0.87 Score=32.08 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEcCCCCCcCC
Q psy7339 54 FALEMKEIAHIIQFLTPRSLILVDELCRAGIE 85 (223)
Q Consensus 54 ~~~el~~~~~~l~~~~~~~vvvl~~~g~~F~a 85 (223)
-...+....+.++..+ ..++++|+.......
T Consensus 63 ~~~~~~~~~~~~~~~~-~~viiiDei~~~~~~ 93 (148)
T smart00382 63 GELRLRLALALARKLK-PDVLILDEITSLLDA 93 (148)
T ss_pred HHHHHHHHHHHHHhcC-CCEEEEECCcccCCH
Confidence 3444555566665444 689999998765443
No 164
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=83.85 E-value=12 Score=30.89 Aligned_cols=69 Identities=16% Similarity=0.132 Sum_probs=44.8
Q ss_pred ecceeeccccccccCCCCccccchhhhcCHHHHHHHHHcCCCCCHHHHHHcCccccccCChhHHHhHHHHHHHHhhcch
Q psy7339 119 LQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSS 197 (223)
Q Consensus 119 ~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~ 197 (223)
.+-.++-|...+|+.-+=..-+. .++-+-.| .=+++-.++.|+||.||+..|+.+....+...+...++
T Consensus 218 GDi~iAEP~AlIGFAGpRVIEQT---------ire~LPeg-fQ~aEfLlehG~iD~iv~R~elr~tla~ll~~~~~~~~ 286 (294)
T COG0777 218 GDIIIAEPGALIGFAGPRVIEQT---------IREKLPEG-FQTAEFLLEHGMIDMIVHRDELRTTLASLLAKLTPQPA 286 (294)
T ss_pred cCeeecCcccccccCcchhhhhh---------hcccCCcc-hhhHHHHHHcCCceeeecHHHHHHHHHHHHHHhCCCCC
Confidence 45566678888887542222222 22222222 33567788999999999999998888888777765544
No 165
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=83.72 E-value=0.63 Score=35.55 Aligned_cols=28 Identities=25% Similarity=0.142 Sum_probs=23.3
Q ss_pred eeeccccccccCCCCccccchhhhcCHH
Q psy7339 122 TFHTPFTLRGMTPEGCSSVLFPRIFGNS 149 (223)
Q Consensus 122 ~f~~pe~~~Gl~p~~g~~~~l~~~vg~~ 149 (223)
.|--.|+..|++|.......+...+|.-
T Consensus 120 VlVs~Evg~g~vp~~~~~r~~~d~lG~l 147 (170)
T PRK05800 120 ILVTNEVGMGIVPEYRLGRHFRDIAGRL 147 (170)
T ss_pred EEEEcCCcccccCCCHHHHHHHHHHHHH
Confidence 4556799999999999998888888863
No 166
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=83.56 E-value=0.72 Score=33.31 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=15.2
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCcceeccc
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLA 34 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~~~~~~~ 34 (223)
++|||||.|.++... |..-+..+.+++++
T Consensus 25 GaGKTtf~r~l~~~l-----g~~~~V~SPTF~l~ 53 (123)
T PF02367_consen 25 GAGKTTFVRGLARAL-----GIDEEVTSPTFSLV 53 (123)
T ss_dssp TSSHHHHHHHHHHHT-----T--S----TTTTSE
T ss_pred CCCHHHHHHHHHHHc-----CCCCCcCCCCeEEE
Confidence 589999999776533 44434444444444
No 167
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=83.37 E-value=0.88 Score=35.55 Aligned_cols=17 Identities=29% Similarity=0.376 Sum_probs=14.6
Q ss_pred CCchhHHHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQIM 17 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l 17 (223)
.||||++++++....+.
T Consensus 48 gsGKS~~l~~ll~~l~~ 64 (205)
T PF01580_consen 48 GSGKSTLLRTLLLSLAL 64 (205)
T ss_dssp TSSHHHHHHHHHHHHHT
T ss_pred CCCccHHHHHHHHHHHH
Confidence 48999999998887776
No 168
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=83.00 E-value=0.98 Score=34.34 Aligned_cols=130 Identities=18% Similarity=0.122 Sum_probs=66.2
Q ss_pred CCchhHHHHHHHHHHHHHhhC---Cccc-CCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCC-eEEE
Q psy7339 1 MSGKSVYIKQVALLQIMAQVG---CYVP-ASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPR-SLIL 75 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g---~~vp-a~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~-~vvv 75 (223)
.||||.|.-....- .| +|+. +..+.-+.-++| ...+........-.++-.++...+++.++. .+|+
T Consensus 10 RSGKS~~AE~la~~-----~~~~v~YvAT~~a~D~Em~~RI----~~Hr~rRp~~W~tvE~~~~l~~~L~~~~~~~~~VL 80 (175)
T COG2087 10 RSGKSSFAEALAGE-----SGGQVLYVATGRAFDDEMQERI----AHHRARRPEHWRTVEAPLDLATLLEALIEPGDVVL 80 (175)
T ss_pred cCCchHHHHHHHHh-----hCCceEEEEecCCCCHHHHHHH----HHHHhcCCCcceEEeccccHHHHHHhcccCCCEEE
Confidence 38999998765443 23 2222 222322333333 111111112233344444566666666654 8999
Q ss_pred EcCCCC-----CcCCCCCCCcchhhhhHHHHhHHHHhhhhh-cccceeeecceeeccccccccCCCCccccchhhhcCH
Q psy7339 76 VDELCR-----AGIEPPPSCLPGERLDHYARTTEQVKNRVL-LNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGN 148 (223)
Q Consensus 76 l~~~g~-----~F~aG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ia~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~ 148 (223)
+|..+- -|+...+.+. -+......+.+.+.+. ++. +..|--+|+.+|++|..-....+...+|.
T Consensus 81 vDcLt~wvtNll~~~e~~~~~----~~~~~~~~~~L~~al~~~~~-----~~ilVsNEvG~GiVPe~~l~R~fRD~~G~ 150 (175)
T COG2087 81 VDCLTLWVTNLLFAGEKDWSA----EAAIEAEIEALLAALSRAPG-----TVVLVSNEVGLGIVPEYRLGRLFRDIAGR 150 (175)
T ss_pred EEcHHHHHHHHHhccccccch----hhhHHHHHHHHHHHHhcCCc-----cEEEEecCccCCcCcCchhhHHHHHHHhH
Confidence 987652 1331111111 1112222222222221 222 45577799999999998888777777775
No 169
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=82.62 E-value=3.1 Score=35.63 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=14.2
Q ss_pred CCchhHHHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQIM 17 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l 17 (223)
.+|||+|+-+++++.-+
T Consensus 136 GsGKTql~lqlav~~ql 152 (344)
T PLN03187 136 RSGKTQLAHTLCVTTQL 152 (344)
T ss_pred CCChhHHHHHHHHHHhc
Confidence 48999999998887755
No 170
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=82.58 E-value=0.7 Score=36.82 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
+||||||||.|.
T Consensus 38 GSGKSTlLRclN 49 (240)
T COG1126 38 GSGKSTLLRCLN 49 (240)
T ss_pred CCCHHHHHHHHH
Confidence 599999999875
No 171
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=82.57 E-value=3 Score=35.16 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=14.7
Q ss_pred CCchhHHHHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQIMA 18 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~ 18 (223)
++|||+|+-+++.+..+.
T Consensus 106 GsGKTql~lqla~~~~~~ 123 (313)
T TIGR02238 106 RCGKTQLSHTLCVTAQLP 123 (313)
T ss_pred CCCcCHHHHHHHHHHhcc
Confidence 489999999988876654
No 172
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=81.59 E-value=4.7 Score=33.45 Aligned_cols=128 Identities=16% Similarity=0.129 Sum_probs=60.5
Q ss_pred CCchhHHHHHHHHHHHHHh-hCCcccCCc-ceeccccceeeeccccccc---ccccchHHHHHHHHHHHHHhcCCCeEEE
Q psy7339 1 MSGKSVYIKQVALLQIMAQ-VGCYVPASL-AEFRLADHIYTRIGFNDSI---ECNASTFALEMKEIAHIIQFLTPRSLIL 75 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~-~g~~vpa~~-~~~~~~d~I~~~~~~~~~~---~~~~s~~~~el~~~~~~l~~~~~~~vvv 75 (223)
.||||+++=++....-+.- .-.|+-+++ +.......+.... .+++ ...++....++.+.+...... .+.+||
T Consensus 70 gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~--~d~l~v~~~~~~e~q~~i~~~~~~~~~~-~i~LvV 146 (279)
T COG0468 70 SSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL--LDNLLVSQPDTGEQQLEIAEKLARSGAE-KIDLLV 146 (279)
T ss_pred CcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHHhh--hcceeEecCCCHHHHHHHHHHHHHhccC-CCCEEE
Confidence 4899999888777665444 334555554 3332222221110 1111 112233333444443333333 599999
Q ss_pred EcCCCCCcCCCCCC-CcchhhhhHHHHhHHHHhhhhh-cccceee-------ecceeeccccccc
Q psy7339 76 VDELCRAGIEPPPS-CLPGERLDHYARTTEQVKNRVL-LNHPVFV-------LQATFHTPFTLRG 131 (223)
Q Consensus 76 l~~~g~~F~aG~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~p~ia-------~~a~f~~pe~~~G 131 (223)
+++....|-....- .......+.+.+..+.+..... .+..+|- .+..|+-|+...|
T Consensus 147 VDSvaa~~r~~~~~d~~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k~~~~f~~~~~~~G 211 (279)
T COG0468 147 VDSVAALVRAEEIEDGHLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKIGVMFGDPETTTG 211 (279)
T ss_pred EecCcccchhhhcCcchHHHHHHHHHHHHHHHHHHHHHcCcEEEEECceeeecCcccCCcccCCC
Confidence 99887666555222 1111222233333333333222 5555554 3555555555544
No 173
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=81.49 E-value=0.64 Score=33.15 Aligned_cols=17 Identities=35% Similarity=0.276 Sum_probs=14.3
Q ss_pred CCchhHHHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQIM 17 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l 17 (223)
++|||++++.+.-....
T Consensus 14 G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 14 GSGKTTLIKRLARQLNA 30 (131)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhHH
Confidence 58999999999887654
No 174
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=81.20 E-value=1.9 Score=33.05 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCCeEEEEcCCCCCcCC
Q psy7339 57 EMKEIAHIIQFLTPRSLILVDELCRAGIE 85 (223)
Q Consensus 57 el~~~~~~l~~~~~~~vvvl~~~g~~F~a 85 (223)
.+.++.+.+....+..+||+|.....+..
T Consensus 128 ~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 128 DLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp HHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred HHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 45556666666566899999988765544
No 175
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=80.98 E-value=23 Score=31.23 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHcCccccccCC-hhHH
Q psy7339 148 NSVASELLYTGRKLNAQEALQYGFVSGVFTT-EEIE 182 (223)
Q Consensus 148 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~l~ 182 (223)
...|.+++-....++++||++.|++|-+..+ .|+.
T Consensus 158 ~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell 193 (436)
T COG1030 158 PTWAERFVTENLSLTAEEALRQGVIDLIARDLNELL 193 (436)
T ss_pred hHHHHHHhhhccCCChhHHHhcCccccccCCHHHHH
Confidence 4678889999999999999999999988765 3443
No 176
>PRK10646 ADP-binding protein; Provisional
Probab=80.95 E-value=1.5 Score=32.97 Aligned_cols=15 Identities=13% Similarity=0.189 Sum_probs=12.4
Q ss_pred CCchhHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQ 15 (223)
Q Consensus 1 ~~gks~~~~~i~~~~ 15 (223)
++|||||.|.++-..
T Consensus 38 GaGKTtf~rgl~~~L 52 (153)
T PRK10646 38 GAGKTTFSRGFLQAL 52 (153)
T ss_pred CCCHHHHHHHHHHHc
Confidence 589999999987654
No 177
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=80.26 E-value=4.4 Score=35.73 Aligned_cols=36 Identities=25% Similarity=0.528 Sum_probs=25.3
Q ss_pred CchhHHHHHHHHHHHHHhhC--------------------------CcccCCcceeccccce
Q psy7339 2 SGKSVYIKQVALLQIMAQVG--------------------------CYVPASLAEFRLADHI 37 (223)
Q Consensus 2 ~gks~~~~~i~~~~~l~~~g--------------------------~~vpa~~~~~~~~d~I 37 (223)
+|||||+|.+.-..+|.++- -|||.+..++.+.|++
T Consensus 28 tGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~ 89 (492)
T TIGR02836 28 TGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGT 89 (492)
T ss_pred CChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCC
Confidence 79999999988775544443 3567777777666544
No 178
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=79.74 E-value=1.1 Score=34.79 Aligned_cols=14 Identities=36% Similarity=0.660 Sum_probs=11.4
Q ss_pred CCchhHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALL 14 (223)
Q Consensus 1 ~~gks~~~~~i~~~ 14 (223)
+||||||||-|.+.
T Consensus 42 GSGKSTfLRCiN~L 55 (256)
T COG4598 42 GSGKSTFLRCINFL 55 (256)
T ss_pred CCchhHHHHHHHhh
Confidence 58999999977653
No 179
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=79.32 E-value=6.6 Score=31.31 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEcCCCC
Q psy7339 55 ALEMKEIAHIIQFLTPRSLILVDELCR 81 (223)
Q Consensus 55 ~~el~~~~~~l~~~~~~~vvvl~~~g~ 81 (223)
..++.+.+..+.....+.+||+|....
T Consensus 108 ~~~l~~~i~~~~~~~~~~~vvID~l~~ 134 (242)
T cd00984 108 VSDIRSRARRLKKEHGLGLIVIDYLQL 134 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCchh
Confidence 455666666655555789999998764
No 180
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=79.14 E-value=9.7 Score=32.29 Aligned_cols=29 Identities=21% Similarity=0.130 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCCCCCcC
Q psy7339 56 LEMKEIAHIIQFLTPRSLILVDELCRAGI 84 (223)
Q Consensus 56 ~el~~~~~~l~~~~~~~vvvl~~~g~~F~ 84 (223)
++..+.++.+-....+.+||+|+....+.
T Consensus 119 eq~l~~~~~li~~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 119 EQALEIAETLVRSGAVDIIVVDSVAALVP 147 (321)
T ss_pred HHHHHHHHHHhhccCCcEEEEcchhhhcc
Confidence 44445555555566789999999875553
No 181
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=78.94 E-value=11 Score=32.06 Aligned_cols=29 Identities=24% Similarity=0.130 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCCCCCcC
Q psy7339 56 LEMKEIAHIIQFLTPRSLILVDELCRAGI 84 (223)
Q Consensus 56 ~el~~~~~~l~~~~~~~vvvl~~~g~~F~ 84 (223)
+++.+.++.+-....+.+||+|+....+.
T Consensus 119 eq~l~i~~~li~s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 119 EQALEIADSLVRSGAVDLIVVDSVAALVP 147 (325)
T ss_pred HHHHHHHHHHHhccCCCEEEEcchHhhcc
Confidence 44455555555566789999999775553
No 182
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=78.90 E-value=1.1 Score=35.79 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=12.1
Q ss_pred CCchhHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQ 15 (223)
Q Consensus 1 ~~gks~~~~~i~~~~ 15 (223)
++|||||||++.-..
T Consensus 43 GcGKST~LR~lNRmn 57 (253)
T COG1117 43 GCGKSTLLRCLNRMN 57 (253)
T ss_pred CcCHHHHHHHHHhhc
Confidence 589999999986543
No 183
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=78.86 E-value=1.6 Score=27.41 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=13.2
Q ss_pred CCchhHHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQI 16 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~ 16 (223)
.+||||++-.+....+
T Consensus 33 GsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 33 GSGKSTLLDAIQTVLY 48 (62)
T ss_pred CCCHHHHHHHHHHHHc
Confidence 4899999999877655
No 184
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=78.37 E-value=0.7 Score=26.95 Aligned_cols=19 Identities=37% Similarity=0.676 Sum_probs=16.3
Q ss_pred HcCCCCCHHHHHHcCcccc
Q psy7339 156 YTGRKLNAQEALQYGFVSG 174 (223)
Q Consensus 156 l~g~~~~a~eA~~~Glv~~ 174 (223)
-+|++++-++|.+.||||.
T Consensus 17 ~tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-H
T ss_pred CCCeEEcHHHHHHCCCcCH
Confidence 4789999999999999985
No 185
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=78.14 E-value=1.3 Score=34.08 Aligned_cols=14 Identities=50% Similarity=0.487 Sum_probs=11.8
Q ss_pred CCchhHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALL 14 (223)
Q Consensus 1 ~~gks~~~~~i~~~ 14 (223)
++|||||+|.|+..
T Consensus 39 G~GKStllk~va~L 52 (223)
T COG4619 39 GCGKSTLLKIVASL 52 (223)
T ss_pred CccHHHHHHHHHhc
Confidence 58999999998753
No 186
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=78.12 E-value=2.7 Score=36.81 Aligned_cols=80 Identities=11% Similarity=0.047 Sum_probs=45.0
Q ss_pred CCchhHHHHHHHHHHHHHhhCC---cccCCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEc
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGC---YVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVD 77 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~---~vpa~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~ 77 (223)
++||||++.-++... ..-|. .+.+|..++.-.++.-+.-...+ ..-....--.++.+.+..+..+.+..+|++|
T Consensus 251 GvGKTTTiaKLA~~L--~~~GkkVglI~aDt~RiaAvEQLk~yae~lg-ipv~v~~d~~~L~~aL~~lk~~~~~DvVLID 327 (436)
T PRK11889 251 GVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIG-FEVIAVRDEAAMTRALTYFKEEARVDYILID 327 (436)
T ss_pred CCcHHHHHHHHHHHH--HHcCCcEEEEecCCcchHHHHHHHHHhhhcC-CcEEecCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 589999999998643 34343 34566666544444422111100 0000001124566777777655567899999
Q ss_pred CCCCCc
Q psy7339 78 ELCRAG 83 (223)
Q Consensus 78 ~~g~~F 83 (223)
..|+..
T Consensus 328 TaGRs~ 333 (436)
T PRK11889 328 TAGKNY 333 (436)
T ss_pred CccccC
Confidence 888755
No 187
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=77.77 E-value=2.5 Score=34.87 Aligned_cols=82 Identities=11% Similarity=0.036 Sum_probs=42.0
Q ss_pred CCchhHHHHHHHHHHHHH-hhCCcccCCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCC
Q psy7339 1 MSGKSVYIKQVALLQIMA-QVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDEL 79 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~-~~g~~vpa~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~ 79 (223)
+.||||+++.++....-. ....++.++..++...+..-......+ .......--.++.+.++.+.+..+..+|++|..
T Consensus 85 g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~-~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~ 163 (270)
T PRK06731 85 GVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIG-FEVIAVRDEAAMTRALTYFKEEARVDYILIDTA 163 (270)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcC-ceEEecCCHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 579999999987654210 112233444444333333211111000 000000112356677777766667899999998
Q ss_pred CCCc
Q psy7339 80 CRAG 83 (223)
Q Consensus 80 g~~F 83 (223)
|+..
T Consensus 164 Gr~~ 167 (270)
T PRK06731 164 GKNY 167 (270)
T ss_pred CCCc
Confidence 8754
No 188
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=77.68 E-value=2.1 Score=31.37 Aligned_cols=14 Identities=14% Similarity=0.171 Sum_probs=12.0
Q ss_pred CCchhHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALL 14 (223)
Q Consensus 1 ~~gks~~~~~i~~~ 14 (223)
++|||||+|.++-.
T Consensus 32 GaGKTtl~~~l~~~ 45 (133)
T TIGR00150 32 GAGKTTLVQGLLQG 45 (133)
T ss_pred CCCHHHHHHHHHHH
Confidence 58999999998765
No 189
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=77.30 E-value=7.2 Score=32.83 Aligned_cols=17 Identities=29% Similarity=0.245 Sum_probs=14.1
Q ss_pred CCchhHHHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQIM 17 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l 17 (223)
.+|||+|+-+++....+
T Consensus 112 GsGKT~l~~~~~~~~~~ 128 (317)
T PRK04301 112 GSGKTQICHQLAVNVQL 128 (317)
T ss_pred CCCHhHHHHHHHHHhcc
Confidence 48999999999877654
No 190
>PTZ00035 Rad51 protein; Provisional
Probab=77.29 E-value=4.1 Score=34.78 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=13.0
Q ss_pred CCchhHHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQI 16 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~ 16 (223)
++|||+++.+++...-
T Consensus 128 GsGKT~l~~~l~~~~q 143 (337)
T PTZ00035 128 RTGKTQLCHTLCVTCQ 143 (337)
T ss_pred CCchhHHHHHHHHHhc
Confidence 5899999998876654
No 191
>PRK09354 recA recombinase A; Provisional
Probab=77.27 E-value=15 Score=31.50 Aligned_cols=74 Identities=18% Similarity=0.124 Sum_probs=38.8
Q ss_pred CCchhHHHHHHHHHHHHH-hhCCcccCCc-ceecc-------ccceeeecccccccccccchHHHHHHHHHHHHHhcCCC
Q psy7339 1 MSGKSVYIKQVALLQIMA-QVGCYVPASL-AEFRL-------ADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPR 71 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~-~~g~~vpa~~-~~~~~-------~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~ 71 (223)
.+|||||+-++.....-. ...+|+-+++ +.... .|+++.. .....++..+.++.+-....+
T Consensus 70 GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~----------qp~~~Eq~l~i~~~li~s~~~ 139 (349)
T PRK09354 70 SSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVS----------QPDTGEQALEIADTLVRSGAV 139 (349)
T ss_pred CCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEe----------cCCCHHHHHHHHHHHhhcCCC
Confidence 489999998876655311 1223443332 11111 1223211 111234444555555556678
Q ss_pred eEEEEcCCCCCcC
Q psy7339 72 SLILVDELCRAGI 84 (223)
Q Consensus 72 ~vvvl~~~g~~F~ 84 (223)
.+||+|+...-+.
T Consensus 140 ~lIVIDSvaaL~~ 152 (349)
T PRK09354 140 DLIVVDSVAALVP 152 (349)
T ss_pred CEEEEeChhhhcc
Confidence 9999999875553
No 192
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=76.98 E-value=3 Score=33.79 Aligned_cols=13 Identities=38% Similarity=0.462 Sum_probs=11.1
Q ss_pred CCchhHHHHHHHH
Q psy7339 1 MSGKSVYIKQVAL 13 (223)
Q Consensus 1 ~~gks~~~~~i~~ 13 (223)
+|||||+++.+.-
T Consensus 23 GSGKT~li~~lL~ 35 (241)
T PF04665_consen 23 GSGKTTLIKSLLY 35 (241)
T ss_pred CCCHHHHHHHHHH
Confidence 5899999999854
No 193
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=76.92 E-value=1.2 Score=32.03 Aligned_cols=12 Identities=50% Similarity=0.576 Sum_probs=9.9
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 21 GsGKStLl~~l~ 32 (137)
T PF00005_consen 21 GSGKSTLLKALA 32 (137)
T ss_dssp TSSHHHHHHHHT
T ss_pred CCccccceeeec
Confidence 589999999763
No 194
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=76.21 E-value=1.5 Score=37.40 Aligned_cols=12 Identities=33% Similarity=0.517 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
+|||||+||.|+
T Consensus 39 GcGKSTlLr~IA 50 (338)
T COG3839 39 GCGKSTLLRMIA 50 (338)
T ss_pred CCCHHHHHHHHh
Confidence 589999999985
No 195
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=76.17 E-value=1.5 Score=35.89 Aligned_cols=13 Identities=46% Similarity=0.363 Sum_probs=11.3
Q ss_pred CCchhHHHHHHHH
Q psy7339 1 MSGKSVYIKQVAL 13 (223)
Q Consensus 1 ~~gks~~~~~i~~ 13 (223)
+|||||+||++.=
T Consensus 38 G~GKSTLLk~l~g 50 (258)
T COG1120 38 GSGKSTLLKCLAG 50 (258)
T ss_pred CCCHHHHHHHHhc
Confidence 5899999999864
No 196
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=75.96 E-value=1.1 Score=34.39 Aligned_cols=56 Identities=21% Similarity=0.311 Sum_probs=32.9
Q ss_pred eeeccccccccCCCCccccc----------------------hhhhcC--HHHHHHHHHcCCCCCHHHHHHcCccccccC
Q psy7339 122 TFHTPFTLRGMTPEGCSSVL----------------------FPRIFG--NSVASELLYTGRKLNAQEALQYGFVSGVFT 177 (223)
Q Consensus 122 ~f~~pe~~~Gl~p~~g~~~~----------------------l~~~vg--~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~ 177 (223)
++..|...+++..+..+..- +....| .....+++-...-++|+||+++|+||+|..
T Consensus 101 R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~ 180 (182)
T PF00574_consen 101 RYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIE 180 (182)
T ss_dssp EEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEES
T ss_pred eeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEecc
Confidence 57777777777666543321 222222 233344444445689999999999999975
No 197
>PF13173 AAA_14: AAA domain
Probab=75.23 E-value=5.5 Score=28.50 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=13.1
Q ss_pred CCchhHHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQI 16 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~ 16 (223)
.+||||+++.+.--.+
T Consensus 12 ~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 12 GVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 4799999999976655
No 198
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=75.19 E-value=1.9 Score=30.32 Aligned_cols=15 Identities=40% Similarity=0.277 Sum_probs=12.0
Q ss_pred CCchhHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQ 15 (223)
Q Consensus 1 ~~gks~~~~~i~~~~ 15 (223)
+|||||+.|.+.-..
T Consensus 9 gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 9 GSGKSTLAKELAERL 23 (121)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 589999999886543
No 199
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=75.08 E-value=1.7 Score=35.49 Aligned_cols=12 Identities=33% Similarity=0.481 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|+|.
T Consensus 40 GaGKSTLlK~iL 51 (254)
T COG1121 40 GAGKSTLLKAIL 51 (254)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 200
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=74.59 E-value=2.2 Score=29.99 Aligned_cols=15 Identities=33% Similarity=0.246 Sum_probs=12.8
Q ss_pred CCchhHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQ 15 (223)
Q Consensus 1 ~~gks~~~~~i~~~~ 15 (223)
+|||||+++.+.-..
T Consensus 8 GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 8 GSGKTTIAKELAERL 22 (129)
T ss_dssp TSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 589999999888774
No 201
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=74.27 E-value=1.9 Score=32.69 Aligned_cols=13 Identities=38% Similarity=0.347 Sum_probs=10.9
Q ss_pred CCchhHHHHHHHH
Q psy7339 1 MSGKSVYIKQVAL 13 (223)
Q Consensus 1 ~~gks~~~~~i~~ 13 (223)
++||||++|.++=
T Consensus 38 GsGKstLl~~i~G 50 (171)
T cd03228 38 GSGKSTLLKLLLR 50 (171)
T ss_pred CCCHHHHHHHHHc
Confidence 5899999998853
No 202
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=73.59 E-value=1.9 Score=33.95 Aligned_cols=12 Identities=33% Similarity=0.412 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 41 GsGKSTLl~~i~ 52 (221)
T TIGR02211 41 GSGKSTLLHLLG 52 (221)
T ss_pred CCCHHHHHHHHh
Confidence 589999999984
No 203
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=73.30 E-value=2 Score=31.93 Aligned_cols=12 Identities=42% Similarity=0.598 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 35 GsGKStll~~l~ 46 (157)
T cd00267 35 GSGKSTLLRAIA 46 (157)
T ss_pred CCCHHHHHHHHh
Confidence 689999999985
No 204
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=73.26 E-value=1.9 Score=33.56 Aligned_cols=12 Identities=33% Similarity=0.379 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 36 GsGKSTLl~~l~ 47 (205)
T cd03226 36 GAGKTTLAKILA 47 (205)
T ss_pred CCCHHHHHHHHh
Confidence 589999999874
No 205
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=73.21 E-value=7.3 Score=31.59 Aligned_cols=18 Identities=28% Similarity=0.414 Sum_probs=16.0
Q ss_pred CchhHHHHHHHHHHHHHh
Q psy7339 2 SGKSVYIKQVALLQIMAQ 19 (223)
Q Consensus 2 ~gks~~~~~i~~~~~l~~ 19 (223)
.|||+|+-+++....+.+
T Consensus 30 ~GKT~~~l~ia~~~a~~~ 47 (259)
T PF03796_consen 30 VGKTAFALQIALNAALNG 47 (259)
T ss_dssp SSHHHHHHHHHHHHHHTT
T ss_pred CCchHHHHHHHHHHHHhc
Confidence 699999999999988764
No 206
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=73.06 E-value=2.2 Score=32.67 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=11.4
Q ss_pred CCchhHHHHHHHH
Q psy7339 1 MSGKSVYIKQVAL 13 (223)
Q Consensus 1 ~~gks~~~~~i~~ 13 (223)
+||||||++.+.-
T Consensus 10 GsGKTTli~~ll~ 22 (178)
T PF02492_consen 10 GSGKTTLINHLLK 22 (178)
T ss_dssp TSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 5899999998876
No 207
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.67 E-value=2.1 Score=33.48 Aligned_cols=12 Identities=25% Similarity=0.407 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 36 GsGKSTLl~~l~ 47 (210)
T cd03269 36 GAGKTTTIRMIL 47 (210)
T ss_pred CCCHHHHHHHHh
Confidence 589999999886
No 208
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.66 E-value=2.1 Score=32.60 Aligned_cols=12 Identities=42% Similarity=0.537 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 36 GsGKSTLl~~l~ 47 (178)
T cd03229 36 GSGKSTLLRCIA 47 (178)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 209
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=72.62 E-value=2.1 Score=33.43 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 36 GsGKSTLl~~l~ 47 (208)
T cd03268 36 GAGKTTTMKIIL 47 (208)
T ss_pred CCCHHHHHHHHh
Confidence 589999999986
No 210
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.57 E-value=2.1 Score=33.80 Aligned_cols=12 Identities=33% Similarity=0.492 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 40 GsGKSTLl~~l~ 51 (220)
T cd03293 40 GCGKSTLLRIIA 51 (220)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 211
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=72.45 E-value=2.2 Score=33.42 Aligned_cols=15 Identities=27% Similarity=0.211 Sum_probs=12.1
Q ss_pred CCchhHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQ 15 (223)
Q Consensus 1 ~~gks~~~~~i~~~~ 15 (223)
++|||||||.|.-..
T Consensus 38 GAGKSTllkLi~~~e 52 (223)
T COG2884 38 GAGKSTLLKLIYGEE 52 (223)
T ss_pred CCCHHHHHHHHHhhh
Confidence 489999999886544
No 212
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=72.43 E-value=2.1 Score=33.63 Aligned_cols=12 Identities=33% Similarity=0.409 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 40 GsGKSTLl~~i~ 51 (218)
T cd03255 40 GSGKSTLLNILG 51 (218)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 213
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=72.42 E-value=12 Score=30.65 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=16.5
Q ss_pred CCchhHHHHHHHHHHHHHhhCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGC 22 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~ 22 (223)
+|||||+++-+..-.+..+.+-
T Consensus 31 GsGKStL~~~~l~~~~~~~~~~ 52 (261)
T cd03271 31 GSGKSSLINDTLYPALARRLHL 52 (261)
T ss_pred CCchHHHHHHHHHHHHHHHhcc
Confidence 5999999999876666555443
No 214
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=72.38 E-value=2.1 Score=33.64 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 41 GsGKSTLl~~l~ 52 (218)
T cd03266 41 GAGKTTTLRMLA 52 (218)
T ss_pred CCCHHHHHHHHh
Confidence 589999999984
No 215
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=72.35 E-value=2.1 Score=33.47 Aligned_cols=12 Identities=33% Similarity=0.415 Sum_probs=10.3
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 37 GsGKSTLl~~l~ 48 (214)
T cd03292 37 GAGKSTLLKLIY 48 (214)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 216
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=72.31 E-value=2.2 Score=32.09 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 36 GsGKSTLl~~i~ 47 (163)
T cd03216 36 GAGKSTLMKILS 47 (163)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 217
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.28 E-value=2.2 Score=32.38 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=10.3
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 36 GsGKStLl~~l~ 47 (173)
T cd03230 36 GAGKTTLIKIIL 47 (173)
T ss_pred CCCHHHHHHHHh
Confidence 589999999874
No 218
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=72.14 E-value=2.1 Score=32.93 Aligned_cols=67 Identities=21% Similarity=0.128 Sum_probs=34.0
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELC 80 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~~g 80 (223)
++||||++|.+. |+.-| +..++.+.+.-+... ++... .|.=......+...+-.++ .++++|+.-
T Consensus 35 GsGKSTLl~~l~--------Gl~~p-~~G~i~~~g~~i~~~--~q~~~--LSgGq~qrv~laral~~~p--~lllLDEPt 99 (177)
T cd03222 35 GTGKTTAVKILA--------GQLIP-NGDNDEWDGITPVYK--PQYID--LSGGELQRVAIAAALLRNA--TFYLFDEPS 99 (177)
T ss_pred CChHHHHHHHHH--------cCCCC-CCcEEEECCEEEEEE--cccCC--CCHHHHHHHHHHHHHhcCC--CEEEEECCc
Confidence 589999999753 33333 333333322111111 11111 3333444455555555544 789999874
Q ss_pred CC
Q psy7339 81 RA 82 (223)
Q Consensus 81 ~~ 82 (223)
.+
T Consensus 100 s~ 101 (177)
T cd03222 100 AY 101 (177)
T ss_pred cc
Confidence 43
No 219
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=72.07 E-value=2.2 Score=32.48 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 38 GsGKStLl~~l~ 49 (178)
T cd03247 38 GSGKSTLLQLLT 49 (178)
T ss_pred CCCHHHHHHHHh
Confidence 489999999875
No 220
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=72.05 E-value=2.3 Score=32.27 Aligned_cols=12 Identities=33% Similarity=0.360 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 38 GsGKStLl~~l~ 49 (173)
T cd03246 38 GSGKSTLARLIL 49 (173)
T ss_pred CCCHHHHHHHHH
Confidence 589999999886
No 221
>KOG0085|consensus
Probab=72.04 E-value=2.1 Score=34.47 Aligned_cols=14 Identities=50% Similarity=0.880 Sum_probs=12.2
Q ss_pred CchhHHHHHHHHHH
Q psy7339 2 SGKSVYIKQVALLQ 15 (223)
Q Consensus 2 ~gks~~~~~i~~~~ 15 (223)
||||||+|+.-++.
T Consensus 50 sgkstfikqmriih 63 (359)
T KOG0085|consen 50 SGKSTFIKQMRIIH 63 (359)
T ss_pred cchhhHHHHHHhhh
Confidence 89999999988763
No 222
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=71.92 E-value=2.2 Score=36.60 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
+|||||+||.|+
T Consensus 41 GcGKTTlLR~IA 52 (352)
T COG3842 41 GCGKTTLLRMIA 52 (352)
T ss_pred CCCHHHHHHHHh
Confidence 589999999885
No 223
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=71.90 E-value=2.2 Score=33.33 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 37 GsGKSTLl~~l~ 48 (211)
T cd03225 37 GSGKSTLLRLLN 48 (211)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 224
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=71.88 E-value=2.4 Score=30.60 Aligned_cols=12 Identities=50% Similarity=0.523 Sum_probs=10.2
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
+|||||+++.+.
T Consensus 9 gsGKSt~a~~l~ 20 (143)
T PF13671_consen 9 GSGKSTLAKRLA 20 (143)
T ss_dssp TSSHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 589999999874
No 225
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=71.86 E-value=2.2 Score=32.79 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|.
T Consensus 28 GsGKSTLl~~i~ 39 (190)
T TIGR01166 28 GAGKSTLLLHLN 39 (190)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 226
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=71.76 E-value=2.3 Score=33.32 Aligned_cols=12 Identities=33% Similarity=0.462 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 36 GsGKSTLl~~l~ 47 (213)
T cd03262 36 GSGKSTLLRCIN 47 (213)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 227
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=71.74 E-value=2.1 Score=34.19 Aligned_cols=12 Identities=17% Similarity=0.371 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
+|||||++|.++
T Consensus 36 GsGKSTLl~~l~ 47 (236)
T cd03219 36 GAGKTTLFNLIS 47 (236)
T ss_pred CCCHHHHHHHHc
Confidence 589999999885
No 228
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=71.59 E-value=2.2 Score=33.49 Aligned_cols=12 Identities=33% Similarity=0.584 Sum_probs=10.3
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 39 GsGKSTLl~~l~ 50 (216)
T TIGR00960 39 GAGKSTFLKLIL 50 (216)
T ss_pred CCCHHHHHHHHh
Confidence 589999999865
No 229
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=71.39 E-value=2.3 Score=32.57 Aligned_cols=12 Identities=8% Similarity=0.135 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 36 GsGKSTLl~~l~ 47 (182)
T cd03215 36 GNGQTELAEALF 47 (182)
T ss_pred CCCHHHHHHHHh
Confidence 589999999876
No 230
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=71.37 E-value=2.4 Score=33.02 Aligned_cols=12 Identities=33% Similarity=0.445 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 34 GsGKSTLl~~l~ 45 (206)
T TIGR03608 34 GSGKSTLLNIIG 45 (206)
T ss_pred CCCHHHHHHHHh
Confidence 589999999876
No 231
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=71.36 E-value=2.3 Score=33.53 Aligned_cols=13 Identities=23% Similarity=0.217 Sum_probs=10.9
Q ss_pred CCchhHHHHHHHH
Q psy7339 1 MSGKSVYIKQVAL 13 (223)
Q Consensus 1 ~~gks~~~~~i~~ 13 (223)
++||||++|.++-
T Consensus 23 GsGKSTLlk~i~G 35 (213)
T PRK15177 23 GSGKTTLTRLLCG 35 (213)
T ss_pred CCCHHHHHHHHhC
Confidence 5899999998753
No 232
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=71.35 E-value=2.3 Score=33.51 Aligned_cols=12 Identities=33% Similarity=0.434 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 36 GsGKSTLl~~i~ 47 (220)
T cd03265 36 GAGKTTTIKMLT 47 (220)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 233
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=71.34 E-value=2.3 Score=33.30 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=10.3
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 36 GsGKSTLl~~l~ 47 (213)
T cd03259 36 GCGKTTLLRLIA 47 (213)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 234
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=71.34 E-value=2.3 Score=33.77 Aligned_cols=12 Identities=17% Similarity=0.227 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 36 GsGKSTLl~~l~ 47 (232)
T cd03218 36 GAGKTTTFYMIV 47 (232)
T ss_pred CCCHHHHHHHHh
Confidence 589999999886
No 235
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=71.33 E-value=5 Score=38.03 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=43.4
Q ss_pred CCchhHHHHHHHHHHHHHhhC---CcccCCcceeccccceeee---cccccccccccchHHHHHHHHHHHHHhcCCCeEE
Q psy7339 1 MSGKSVYIKQVALLQIMAQVG---CYVPASLAEFRLADHIYTR---IGFNDSIECNASTFALEMKEIAHIIQFLTPRSLI 74 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g---~~vpa~~~~~~~~d~I~~~---~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vv 74 (223)
++||||++.-++-...+-+-+ ..+.++.+++...+.+-+. ++.+-.... --.++.++++.+ .+..+|
T Consensus 195 GvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~----~~~~l~~al~~~---~~~D~V 267 (767)
T PRK14723 195 GVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK----DAADLRFALAAL---GDKHLV 267 (767)
T ss_pred CCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC----CHHHHHHHHHHh---cCCCEE
Confidence 589999999888765443322 3567777776665555221 111111111 123455555544 355799
Q ss_pred EEcCCCCCc
Q psy7339 75 LVDELCRAG 83 (223)
Q Consensus 75 vl~~~g~~F 83 (223)
++|-.|+..
T Consensus 268 LIDTAGRs~ 276 (767)
T PRK14723 268 LIDTVGMSQ 276 (767)
T ss_pred EEeCCCCCc
Confidence 999888654
No 236
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=71.29 E-value=2.4 Score=33.64 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 36 GsGKSTLl~~i~ 47 (227)
T cd03260 36 GCGKSTLLRLLN 47 (227)
T ss_pred CCCHHHHHHHHH
Confidence 589999999876
No 237
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=71.28 E-value=2.6 Score=29.30 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=12.2
Q ss_pred CCchhHHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQI 16 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~ 16 (223)
++|||+|++++.-...
T Consensus 9 g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 9 GVGKTSLIRRLCGGEF 24 (119)
T ss_dssp TSSHHHHHHHHHHSS-
T ss_pred CCCHHHHHHHHhcCCC
Confidence 5899999998875554
No 238
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=71.26 E-value=2.3 Score=34.04 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 38 GsGKSTLl~~l~ 49 (239)
T cd03296 38 GSGKTTLLRLIA 49 (239)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 239
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=71.24 E-value=14 Score=30.90 Aligned_cols=17 Identities=29% Similarity=0.245 Sum_probs=14.2
Q ss_pred CCchhHHHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQIM 17 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l 17 (223)
++|||+|+-+++....+
T Consensus 105 g~GKT~l~~~~~~~~~~ 121 (310)
T TIGR02236 105 GSGKTQICHQLAVNVQL 121 (310)
T ss_pred CCCHHHHHHHHHHHhcC
Confidence 58999999999877654
No 240
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=71.20 E-value=2.3 Score=33.29 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=10.3
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 38 GsGKSTLl~~i~ 49 (214)
T TIGR02673 38 GAGKTTLLKLLY 49 (214)
T ss_pred CCCHHHHHHHHh
Confidence 589999999865
No 241
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=71.05 E-value=2.4 Score=33.19 Aligned_cols=12 Identities=25% Similarity=0.456 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 35 GsGKSTLl~~l~ 46 (211)
T cd03264 35 GAGKTTLMRILA 46 (211)
T ss_pred CCCHHHHHHHHh
Confidence 589999999886
No 242
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=70.96 E-value=2.4 Score=32.92 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 37 GsGKSTLl~~i~ 48 (200)
T PRK13540 37 GAGKTTLLKLIA 48 (200)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 243
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=70.92 E-value=2.4 Score=33.28 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 34 GsGKSTLl~~l~ 45 (213)
T TIGR01277 34 GAGKSTLLNLIA 45 (213)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 244
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=70.84 E-value=2.3 Score=33.75 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 36 GsGKSTLl~~l~ 47 (230)
T TIGR03410 36 GVGKTTLLKTLM 47 (230)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 245
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=70.80 E-value=2.5 Score=33.99 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=10.3
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|+|.
T Consensus 39 GaGKTTlLkti~ 50 (237)
T COG0410 39 GAGKTTLLKTIM 50 (237)
T ss_pred CCCHHHHHHHHh
Confidence 479999999984
No 246
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=70.72 E-value=2.4 Score=33.93 Aligned_cols=12 Identities=25% Similarity=0.432 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 38 GsGKSTLl~~l~ 49 (243)
T TIGR02315 38 GAGKSTLLRCIN 49 (243)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 247
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=70.68 E-value=2.5 Score=33.33 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 38 GsGKSTLl~~l~ 49 (220)
T cd03263 38 GAGKTTTLKMLT 49 (220)
T ss_pred CCCHHHHHHHHh
Confidence 589999999886
No 248
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=70.53 E-value=2.5 Score=34.49 Aligned_cols=12 Identities=42% Similarity=0.357 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 36 GsGKSTLlk~l~ 47 (255)
T cd03236 36 GIGKSTALKILA 47 (255)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 249
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=70.53 E-value=2.5 Score=33.08 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 36 GsGKSTLl~~l~ 47 (213)
T cd03301 36 GCGKTTTLRMIA 47 (213)
T ss_pred CCCHHHHHHHHh
Confidence 589999999876
No 250
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=70.47 E-value=2.4 Score=33.50 Aligned_cols=12 Identities=33% Similarity=0.398 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 41 GsGKSTLl~~l~ 52 (228)
T cd03257 41 GSGKSTLARAIL 52 (228)
T ss_pred CCCHHHHHHHHh
Confidence 589999999885
No 251
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=70.46 E-value=2.6 Score=32.23 Aligned_cols=12 Identities=42% Similarity=0.551 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 35 GsGKStLl~~i~ 46 (180)
T cd03214 35 GAGKSTLLKTLA 46 (180)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 252
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=70.46 E-value=3.1 Score=33.10 Aligned_cols=14 Identities=29% Similarity=0.316 Sum_probs=11.4
Q ss_pred CCchhHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALL 14 (223)
Q Consensus 1 ~~gks~~~~~i~~~ 14 (223)
+||||||++.+.-.
T Consensus 9 GSGKTTla~~L~~~ 22 (220)
T cd02025 9 AVGKSTTARVLQAL 22 (220)
T ss_pred CCCHHHHHHHHHHH
Confidence 58999999977653
No 253
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=70.44 E-value=2.2 Score=33.41 Aligned_cols=12 Identities=33% Similarity=0.481 Sum_probs=10.3
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 35 GsGKSTLl~~l~ 46 (213)
T cd03235 35 GAGKSTLLKAIL 46 (213)
T ss_pred CCCHHHHHHHHc
Confidence 589999999874
No 254
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=70.42 E-value=2.5 Score=33.65 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 41 GsGKSTLl~~l~ 52 (233)
T cd03258 41 GAGKSTLIRCIN 52 (233)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 255
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=70.39 E-value=2.5 Score=32.66 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 43 GsGKSTLl~~l~ 54 (192)
T cd03232 43 GAGKTTLLDVLA 54 (192)
T ss_pred CCCHHHHHHHHh
Confidence 589999999886
No 256
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=70.19 E-value=2.6 Score=32.68 Aligned_cols=12 Identities=25% Similarity=0.385 Sum_probs=10.3
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 36 GsGKSTLl~~l~ 47 (198)
T TIGR01189 36 GIGKTTLLRILA 47 (198)
T ss_pred CCCHHHHHHHHh
Confidence 589999999865
No 257
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=70.12 E-value=2.6 Score=33.63 Aligned_cols=12 Identities=33% Similarity=0.373 Sum_probs=10.8
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 37 GsGKSTLl~~i~ 48 (236)
T cd03253 37 GSGKSTILRLLF 48 (236)
T ss_pred CCCHHHHHHHHh
Confidence 589999999986
No 258
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=70.00 E-value=2.6 Score=33.60 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 21 GsGKSTLl~~l~ 32 (230)
T TIGR01184 21 GCGKSTLLNLIS 32 (230)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 259
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=69.96 E-value=2.5 Score=33.80 Aligned_cols=12 Identities=50% Similarity=0.490 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 36 GsGKSTLl~~l~ 47 (243)
T TIGR01978 36 GSGKSTLSKTIA 47 (243)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 260
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=69.96 E-value=2.6 Score=33.20 Aligned_cols=12 Identities=25% Similarity=0.279 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 37 GsGKSTLl~~i~ 48 (218)
T cd03290 37 GCGKSSLLLAIL 48 (218)
T ss_pred CCCHHHHHHHHh
Confidence 589999999976
No 261
>PRK04296 thymidine kinase; Provisional
Probab=69.93 E-value=11 Score=29.17 Aligned_cols=16 Identities=38% Similarity=0.121 Sum_probs=12.5
Q ss_pred CCchhHHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQI 16 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~ 16 (223)
++||||.+........
T Consensus 12 GsGKTT~~l~~~~~~~ 27 (190)
T PRK04296 12 NSGKSTELLQRAYNYE 27 (190)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4799999988866554
No 262
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=69.91 E-value=2.6 Score=33.58 Aligned_cols=12 Identities=33% Similarity=0.412 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 45 GsGKSTLl~~l~ 56 (233)
T PRK11629 45 GSGKSTLLHLLG 56 (233)
T ss_pred CCCHHHHHHHHh
Confidence 589999999985
No 263
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=69.88 E-value=2.6 Score=34.17 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|+|+
T Consensus 44 GsGKStlLr~I~ 55 (263)
T COG1127 44 GSGKSTLLRLIL 55 (263)
T ss_pred CcCHHHHHHHHh
Confidence 589999999874
No 264
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=69.86 E-value=2.6 Score=32.78 Aligned_cols=12 Identities=33% Similarity=0.362 Sum_probs=10.3
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 41 G~GKSTLl~~i~ 52 (204)
T cd03250 41 GSGKSSLLSALL 52 (204)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 265
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=69.86 E-value=2.6 Score=33.66 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 39 GsGKSTLl~~i~ 50 (238)
T cd03249 39 GCGKSTVVSLLE 50 (238)
T ss_pred CCCHHHHHHHHh
Confidence 589999999887
No 266
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=69.82 E-value=2.7 Score=33.36 Aligned_cols=12 Identities=42% Similarity=0.429 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 46 GsGKSTLl~~i~ 57 (228)
T PRK10584 46 GSGKSTLLAILA 57 (228)
T ss_pred CCCHHHHHHHHH
Confidence 589999999886
No 267
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=69.81 E-value=2.6 Score=32.95 Aligned_cols=12 Identities=42% Similarity=0.506 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 34 GsGKSTLl~~l~ 45 (211)
T cd03298 34 GSGKSTLLNLIA 45 (211)
T ss_pred CCCHHHHHHHHh
Confidence 589999999886
No 268
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=69.74 E-value=2.6 Score=32.38 Aligned_cols=11 Identities=36% Similarity=0.395 Sum_probs=9.7
Q ss_pred CCchhHHHHHH
Q psy7339 1 MSGKSVYIKQV 11 (223)
Q Consensus 1 ~~gks~~~~~i 11 (223)
++||||++|.+
T Consensus 31 G~GKSTLl~~i 41 (176)
T cd03238 31 GSGKSTLVNEG 41 (176)
T ss_pred CCCHHHHHHHH
Confidence 58999999976
No 269
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=69.65 E-value=5.6 Score=32.20 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEcCCC
Q psy7339 53 TFALEMKEIAHIIQFLTPRSLILVDELC 80 (223)
Q Consensus 53 ~~~~el~~~~~~l~~~~~~~vvvl~~~g 80 (223)
.....+.+.+..........++++++.-
T Consensus 106 ~~~~~l~~~l~~~~~~~~~~vliiDe~~ 133 (269)
T TIGR03015 106 ALLRELEDFLIEQFAAGKRALLVVDEAQ 133 (269)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEECcc
Confidence 3445555555554445556788999854
No 270
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=69.63 E-value=2.6 Score=33.61 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 35 GsGKSTLl~~l~ 46 (232)
T PRK10771 35 GAGKSTLLNLIA 46 (232)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 271
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=69.63 E-value=2.7 Score=33.71 Aligned_cols=12 Identities=25% Similarity=0.235 Sum_probs=10.8
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 39 GsGKSTLl~~l~ 50 (241)
T PRK10895 39 GAGKTTTFYMVV 50 (241)
T ss_pred CCCHHHHHHHHh
Confidence 589999999987
No 272
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=69.57 E-value=2.7 Score=33.36 Aligned_cols=12 Identities=50% Similarity=0.515 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 43 GsGKSTLl~~l~ 54 (225)
T PRK10247 43 GCGKSTLLKIVA 54 (225)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 273
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=69.46 E-value=49 Score=30.47 Aligned_cols=75 Identities=16% Similarity=0.022 Sum_probs=47.3
Q ss_pred ecceeeccccccccCCCCccccchhhh-c------------CHHHHH-HH--HHcCCCCCHHHHHHcCccccccCChhHH
Q psy7339 119 LQATFHTPFTLRGMTPEGCSSVLFPRI-F------------GNSVAS-EL--LYTGRKLNAQEALQYGFVSGVFTTEEIE 182 (223)
Q Consensus 119 ~~a~f~~pe~~~Gl~p~~g~~~~l~~~-v------------g~~~a~-~l--~l~g~~~~a~eA~~~Glv~~v~~~~~l~ 182 (223)
.+..|..|...+|..++-++...+.+. + -...+. +. -+.-+..++-.|-+.|+||+|.+|.+..
T Consensus 465 ~d~~~awp~A~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~aa~~~~vD~VIdP~dTR 544 (569)
T PLN02820 465 PNFLFMWPNARIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVEAYEREANPYYSTARLWDDGVIDPADTR 544 (569)
T ss_pred CCEEEECCCCeEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHHHHHHhCCHHHHHHcCCcCcccCHHHHH
Confidence 355888899999998887776555431 1 111011 10 1122345777788999999999998877
Q ss_pred HhHHHHHHHHh
Q psy7339 183 RDLWPRIHAWA 193 (223)
Q Consensus 183 ~~a~~~a~~l~ 193 (223)
.......+...
T Consensus 545 ~~l~~~l~~~~ 555 (569)
T PLN02820 545 RVLGLCLSAAL 555 (569)
T ss_pred HHHHHHHHHhh
Confidence 66655555443
No 274
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=69.41 E-value=2.7 Score=33.34 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 43 GsGKSTLlk~l~ 54 (226)
T cd03234 43 GSGKTTLLDAIS 54 (226)
T ss_pred CCCHHHHHHHHh
Confidence 589999999876
No 275
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=69.40 E-value=2.7 Score=33.53 Aligned_cols=12 Identities=33% Similarity=0.495 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 36 GsGKSTLl~~l~ 47 (235)
T cd03261 36 GSGKSTLLRLIV 47 (235)
T ss_pred CCCHHHHHHHHh
Confidence 589999999884
No 276
>PRK10908 cell division protein FtsE; Provisional
Probab=69.33 E-value=2.7 Score=33.17 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 38 GsGKSTLl~~l~ 49 (222)
T PRK10908 38 GAGKSTLLKLIC 49 (222)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 277
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=69.30 E-value=6.2 Score=34.37 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=42.7
Q ss_pred CCchhHHHHHHHHHHHHHh--hCC---cccCCcceeccccce--eee-cccccccccccchHHHHHHHHHHHHHhcCCCe
Q psy7339 1 MSGKSVYIKQVALLQIMAQ--VGC---YVPASLAEFRLADHI--YTR-IGFNDSIECNASTFALEMKEIAHIIQFLTPRS 72 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~--~g~---~vpa~~~~~~~~d~I--~~~-~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~ 72 (223)
++||||++.-++....+.+ -|. .+.++.+++.-.+++ +.. ++.+ .. ...-..++...+..+ .+..
T Consensus 184 GvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvp--v~--~~~~~~~l~~~L~~~---~~~D 256 (388)
T PRK12723 184 GVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP--VK--AIESFKDLKEEITQS---KDFD 256 (388)
T ss_pred CCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcc--eE--eeCcHHHHHHHHHHh---CCCC
Confidence 5899999999986655542 122 345666665444444 111 2221 11 111234555554443 4678
Q ss_pred EEEEcCCCCCc
Q psy7339 73 LILVDELCRAG 83 (223)
Q Consensus 73 vvvl~~~g~~F 83 (223)
+|++|..|+..
T Consensus 257 lVLIDTaGr~~ 267 (388)
T PRK12723 257 LVLVDTIGKSP 267 (388)
T ss_pred EEEEcCCCCCc
Confidence 99999998764
No 278
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=69.27 E-value=13 Score=32.58 Aligned_cols=80 Identities=13% Similarity=0.106 Sum_probs=44.7
Q ss_pred CCchhHHHHHHHHHHHHHhhCC---cccCCcceeccccceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEc
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGC---YVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVD 77 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~---~vpa~~~~~~~~d~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~ 77 (223)
++||||++..++... ..-|. .+.++..+..-.++.-+.-...+-... ...--.++.++++.+....+..+|++|
T Consensus 216 GvGKTTt~akLA~~l--~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~-~~~dp~dL~~al~~l~~~~~~D~VLID 292 (407)
T PRK12726 216 GVGKTTTLVKLGWQL--LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI-VATSPAELEEAVQYMTYVNCVDHILID 292 (407)
T ss_pred CCCHHHHHHHHHHHH--HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE-ecCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence 589999999998643 33343 345666555433333111111110000 011234667777777655667899999
Q ss_pred CCCCCc
Q psy7339 78 ELCRAG 83 (223)
Q Consensus 78 ~~g~~F 83 (223)
..|+..
T Consensus 293 TAGr~~ 298 (407)
T PRK12726 293 TVGRNY 298 (407)
T ss_pred CCCCCc
Confidence 888754
No 279
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=69.27 E-value=2.7 Score=33.04 Aligned_cols=12 Identities=25% Similarity=0.476 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 47 GsGKSTLl~~i~ 58 (214)
T PRK13543 47 GAGKTTLLRVLA 58 (214)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 280
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=69.17 E-value=2.7 Score=33.27 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 39 GsGKSTLl~~l~ 50 (229)
T cd03254 39 GAGKTTLINLLM 50 (229)
T ss_pred CCCHHHHHHHHh
Confidence 589999999985
No 281
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=69.17 E-value=2.7 Score=33.15 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=10.3
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 36 GsGKSTLl~~l~ 47 (222)
T cd03224 36 GAGKTTLLKTIM 47 (222)
T ss_pred CCCHHHHHHHHh
Confidence 589999999874
No 282
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=69.14 E-value=6.4 Score=29.46 Aligned_cols=13 Identities=15% Similarity=0.368 Sum_probs=10.5
Q ss_pred CCchhHHHHHHHH
Q psy7339 1 MSGKSVYIKQVAL 13 (223)
Q Consensus 1 ~~gks~~~~~i~~ 13 (223)
.+||||+++.+.-
T Consensus 10 GsGKTtl~~~l~~ 22 (158)
T cd03112 10 GAGKTTLLNHILT 22 (158)
T ss_pred CCCHHHHHHHHHh
Confidence 4899999997553
No 283
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=69.08 E-value=2.8 Score=31.58 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 37 GsGKSTLl~~l~ 48 (166)
T cd03223 37 GTGKSSLFRALA 48 (166)
T ss_pred CCCHHHHHHHHh
Confidence 589999999876
No 284
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=68.97 E-value=2.8 Score=32.99 Aligned_cols=12 Identities=50% Similarity=0.537 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 40 GsGKSTLl~~i~ 51 (220)
T cd03245 40 GSGKSTLLKLLA 51 (220)
T ss_pred CCCHHHHHHHHh
Confidence 589999999885
No 285
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=68.91 E-value=2.8 Score=34.02 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 42 GsGKSTLl~~l~ 53 (258)
T PRK11701 42 GSGKTTLLNALS 53 (258)
T ss_pred CCCHHHHHHHHh
Confidence 589999999976
No 286
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=68.84 E-value=2.8 Score=33.81 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 42 GsGKSTLl~~l~ 53 (253)
T PRK14242 42 GCGKSTFLRCLN 53 (253)
T ss_pred CCCHHHHHHHHH
Confidence 589999999985
No 287
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=68.84 E-value=2.8 Score=33.32 Aligned_cols=12 Identities=33% Similarity=0.456 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 38 GsGKSTLl~~l~ 49 (234)
T cd03251 38 GSGKSTLVNLIP 49 (234)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 288
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=68.83 E-value=2.9 Score=32.16 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=10.1
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
+|||||+++++.
T Consensus 35 GSGKTTll~aL~ 46 (186)
T cd01130 35 GSGKTTLLNALL 46 (186)
T ss_pred CCCHHHHHHHHH
Confidence 589999999854
No 289
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=68.76 E-value=2.8 Score=34.07 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 49 GsGKSTLl~~l~ 60 (260)
T PRK10744 49 GCGKSTLLRTFN 60 (260)
T ss_pred CCCHHHHHHHHh
Confidence 589999999986
No 290
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=68.63 E-value=2.9 Score=33.52 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 57 GsGKSTLl~~i~ 68 (236)
T cd03267 57 GAGKTTTLKILS 68 (236)
T ss_pred CCCHHHHHHHHh
Confidence 589999999984
No 291
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=68.62 E-value=3.1 Score=31.06 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=12.2
Q ss_pred CCchhHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQ 15 (223)
Q Consensus 1 ~~gks~~~~~i~~~~ 15 (223)
++|||||.|.++...
T Consensus 35 GAGKTtf~rgi~~~L 49 (149)
T COG0802 35 GAGKTTLVRGIAKGL 49 (149)
T ss_pred cCChHHHHHHHHHHc
Confidence 589999999887643
No 292
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=68.58 E-value=2.9 Score=32.82 Aligned_cols=12 Identities=33% Similarity=0.506 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 33 GsGKSTLl~~l~ 44 (214)
T cd03297 33 GAGKSTLLRCIA 44 (214)
T ss_pred CCCHHHHHHHHh
Confidence 589999999874
No 293
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=68.48 E-value=2.9 Score=33.52 Aligned_cols=12 Identities=33% Similarity=0.434 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 37 GsGKSTLl~~l~ 48 (242)
T cd03295 37 GSGKTTTMKMIN 48 (242)
T ss_pred CCCHHHHHHHHh
Confidence 589999999885
No 294
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=68.40 E-value=2.9 Score=33.03 Aligned_cols=12 Identities=33% Similarity=0.429 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 44 GsGKSTLl~~i~ 55 (224)
T TIGR02324 44 GAGKSTLLKSLY 55 (224)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 295
>PF13479 AAA_24: AAA domain
Probab=68.39 E-value=7 Score=30.82 Aligned_cols=27 Identities=11% Similarity=0.038 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhc-CCCeEEEEcCCC
Q psy7339 54 FALEMKEIAHIIQFL-TPRSLILVDELC 80 (223)
Q Consensus 54 ~~~el~~~~~~l~~~-~~~~vvvl~~~g 80 (223)
-+.++.++++.++++ .+...||+++..
T Consensus 51 s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 51 SWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred CHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 456777777776554 568999999664
No 296
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=68.23 E-value=3 Score=33.66 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=10.8
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 40 GsGKSTLl~~l~ 51 (251)
T PRK14251 40 GCGKSTFLRCLN 51 (251)
T ss_pred CCCHHHHHHHHh
Confidence 589999999887
No 297
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=68.17 E-value=2.9 Score=33.33 Aligned_cols=12 Identities=42% Similarity=0.407 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 38 GsGKSTLl~~l~ 49 (237)
T cd03252 38 GSGKSTLTKLIQ 49 (237)
T ss_pred CCCHHHHHHHHh
Confidence 589999999886
No 298
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=68.16 E-value=3 Score=33.83 Aligned_cols=12 Identities=33% Similarity=0.501 Sum_probs=10.3
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|-|+
T Consensus 39 GcGKSTLLriiA 50 (248)
T COG1116 39 GCGKSTLLRLIA 50 (248)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 299
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=68.09 E-value=3 Score=33.33 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 37 GsGKSTLl~~l~ 48 (241)
T cd03256 37 GAGKSTLLRCLN 48 (241)
T ss_pred CCCHHHHHHHHh
Confidence 589999999886
No 300
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=67.98 E-value=2.8 Score=34.36 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 37 GsGKSTLl~~l~ 48 (271)
T PRK13638 37 GCGKSTLFMNLS 48 (271)
T ss_pred CCCHHHHHHHHc
Confidence 589999999875
No 301
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=67.96 E-value=3.1 Score=32.57 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 38 GsGKSTLl~~l~ 49 (207)
T PRK13539 38 GSGKTTLLRLIA 49 (207)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 302
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=67.95 E-value=3 Score=33.82 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
+|||||++|.+.
T Consensus 40 GsGKSTLl~~la 51 (258)
T PRK14241 40 GCGKSTVLRTLN 51 (258)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 303
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=67.88 E-value=10 Score=29.42 Aligned_cols=28 Identities=18% Similarity=0.072 Sum_probs=18.5
Q ss_pred CCchhHHHHHHHHHHHHH-hhCCcccCCc
Q psy7339 1 MSGKSVYIKQVALLQIMA-QVGCYVPASL 28 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~-~~g~~vpa~~ 28 (223)
++|||+|+.+++....-. .-.+|+..+.
T Consensus 22 GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 22 GSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 489999999887766422 1345555554
No 304
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=67.88 E-value=2.9 Score=33.79 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=11.0
Q ss_pred CCchhHHHHHHHH
Q psy7339 1 MSGKSVYIKQVAL 13 (223)
Q Consensus 1 ~~gks~~~~~i~~ 13 (223)
++||||+||++.-
T Consensus 40 GaGKSTLLR~lng 52 (258)
T COG3638 40 GAGKSTLLRSLNG 52 (258)
T ss_pred CCcHHHHHHHHhc
Confidence 5899999999854
No 305
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=67.73 E-value=3 Score=33.67 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=14.9
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcc
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYV 24 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~v 24 (223)
+||||||++++.. ++...|..+
T Consensus 6 GSGKTT~~~~~~~--~~~~~~~~~ 27 (238)
T PF03029_consen 6 GSGKTTFCKGLSE--WLESNGRDV 27 (238)
T ss_dssp TSSHHHHHHHHHH--HHTTT-S-E
T ss_pred CCCHHHHHHHHHH--HHHhccCCc
Confidence 5999999998876 444555443
No 306
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=67.67 E-value=33 Score=32.83 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCCeEEEEcCCCCCcC
Q psy7339 58 MKEIAHIIQFLTPRSLILVDELCRAGI 84 (223)
Q Consensus 58 l~~~~~~l~~~~~~~vvvl~~~g~~F~ 84 (223)
+...++.+-....+++||+|+....|.
T Consensus 126 ~l~~i~~lv~~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 126 ALEIADMLIRSGALDIVVIDSVAALVP 152 (790)
T ss_pred HHHHHHHHhhcCCCeEEEEcchhhhcc
Confidence 334444443446789999999876664
No 307
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=67.67 E-value=3.1 Score=33.30 Aligned_cols=12 Identities=42% Similarity=0.551 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 36 GsGKSTLl~~i~ 47 (237)
T TIGR00968 36 GSGKSTLLRIIA 47 (237)
T ss_pred CCCHHHHHHHHh
Confidence 589999999986
No 308
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=67.66 E-value=3.1 Score=33.95 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|.
T Consensus 48 GsGKSTLlk~l~ 59 (257)
T PRK11247 48 GCGKSTLLRLLA 59 (257)
T ss_pred CCCHHHHHHHHh
Confidence 589999999886
No 309
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=67.62 E-value=3.1 Score=33.21 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 37 GsGKSTLl~~l~ 48 (236)
T TIGR03864 37 GAGKSTLFSLLT 48 (236)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 310
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=67.53 E-value=3.1 Score=33.60 Aligned_cols=12 Identities=42% Similarity=0.396 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 39 GsGKSTLl~~l~ 50 (253)
T TIGR02323 39 GSGKSTLLGCLA 50 (253)
T ss_pred CCCHHHHHHHHh
Confidence 589999999876
No 311
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=67.51 E-value=3.1 Score=33.46 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 39 GsGKSTLl~~l~ 50 (250)
T PRK11264 39 GSGKTTLLRCIN 50 (250)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 312
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=67.47 E-value=3.1 Score=32.41 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=10.3
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 37 GsGKSTLl~~l~ 48 (204)
T PRK13538 37 GAGKTSLLRILA 48 (204)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 313
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=67.44 E-value=3 Score=34.12 Aligned_cols=12 Identities=17% Similarity=0.376 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 43 GsGKSTLl~~l~ 54 (269)
T PRK11831 43 GIGKTTLLRLIG 54 (269)
T ss_pred CCCHHHHHHHHh
Confidence 589999999886
No 314
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=67.43 E-value=3 Score=33.17 Aligned_cols=12 Identities=33% Similarity=0.254 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 22 GsGKSTLl~~l~ 33 (230)
T TIGR02770 22 GSGKSLTCLAIL 33 (230)
T ss_pred CCCHHHHHHHHh
Confidence 589999999886
No 315
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=67.43 E-value=3.1 Score=33.67 Aligned_cols=12 Identities=42% Similarity=0.598 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 35 GsGKSTLlk~L~ 46 (246)
T cd03237 35 GIGKTTFIKMLA 46 (246)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 316
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=67.40 E-value=3 Score=30.70 Aligned_cols=64 Identities=20% Similarity=0.100 Sum_probs=33.8
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCcceecccc--ceeeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEEcC
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLAD--HIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDE 78 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~~~~~~~d--~I~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl~~ 78 (223)
++||||+++.+ .|..-| +..++.+.+ .+.... + .|.=......+...+-.+ ..++++|+
T Consensus 36 GsGKStLl~~l--------~G~~~~-~~G~i~~~~~~~i~~~~---~-----lS~G~~~rv~laral~~~--p~illlDE 96 (144)
T cd03221 36 GAGKSTLLKLI--------AGELEP-DEGIVTWGSTVKIGYFE---Q-----LSGGEKMRLALAKLLLEN--PNLLLLDE 96 (144)
T ss_pred CCCHHHHHHHH--------cCCCCC-CceEEEECCeEEEEEEc---c-----CCHHHHHHHHHHHHHhcC--CCEEEEeC
Confidence 48999999987 455434 333443322 121111 1 233333334445555544 47999998
Q ss_pred CCCCc
Q psy7339 79 LCRAG 83 (223)
Q Consensus 79 ~g~~F 83 (223)
...+.
T Consensus 97 P~~~L 101 (144)
T cd03221 97 PTNHL 101 (144)
T ss_pred CccCC
Confidence 75444
No 317
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=67.40 E-value=3.1 Score=33.73 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 40 GsGKSTLl~~i~ 51 (251)
T PRK09544 40 GAGKSTLVRVVL 51 (251)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 318
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=67.40 E-value=2.8 Score=33.45 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 41 GsGKSTLl~~l~ 52 (237)
T PRK11614 41 GAGKTTLLGTLC 52 (237)
T ss_pred CCCHHHHHHHHc
Confidence 589999999875
No 319
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=67.38 E-value=3.1 Score=33.78 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 37 GsGKSTLl~~l~ 48 (255)
T PRK11248 37 GCGKTTLLNLIA 48 (255)
T ss_pred CCCHHHHHHHHh
Confidence 589999999886
No 320
>KOG0840|consensus
Probab=67.29 E-value=3.1 Score=33.80 Aligned_cols=57 Identities=23% Similarity=0.232 Sum_probs=37.9
Q ss_pred ecceeeccccccccCCCCccccchhhhcC-HHHHHHHHH------------cC-------------CCCCHHHHHHcCcc
Q psy7339 119 LQATFHTPFTLRGMTPEGCSSVLFPRIFG-NSVASELLY------------TG-------------RKLNAQEALQYGFV 172 (223)
Q Consensus 119 ~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg-~~~a~~l~l------------~g-------------~~~~a~eA~~~Glv 172 (223)
.+-++++|..++-+.-+.|+..--. .. .-.|+|++. || +.++|+||+++|||
T Consensus 174 KG~R~alPnsriMIhQP~gga~Gqa--~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fmsa~EA~eyGli 251 (275)
T KOG0840|consen 174 KGKRYALPNSRIMIHQPSGGAGGQA--TDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDMDRDRFMSAEEAKEYGLI 251 (275)
T ss_pred CcceeecCCceeEEeccCCCcCccc--hHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhhcccccCCHHHHHHhcch
Confidence 5779999999988877666632100 11 123333322 33 45899999999999
Q ss_pred ccccC
Q psy7339 173 SGVFT 177 (223)
Q Consensus 173 ~~v~~ 177 (223)
|.|..
T Consensus 252 D~v~~ 256 (275)
T KOG0840|consen 252 DKVID 256 (275)
T ss_pred hhhhc
Confidence 99985
No 321
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=66.94 E-value=3.2 Score=32.99 Aligned_cols=12 Identities=33% Similarity=0.492 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 58 GsGKSTLl~~l~ 69 (224)
T cd03220 58 GAGKSTLLRLLA 69 (224)
T ss_pred CCCHHHHHHHHh
Confidence 589999999985
No 322
>PRK07261 topology modulation protein; Provisional
Probab=66.54 E-value=3.5 Score=31.32 Aligned_cols=12 Identities=33% Similarity=0.473 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
+|||||+.+.++
T Consensus 10 GsGKSTla~~l~ 21 (171)
T PRK07261 10 GSGKSTLARKLS 21 (171)
T ss_pred CCCHHHHHHHHH
Confidence 589999999974
No 323
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=66.50 E-value=3.4 Score=32.52 Aligned_cols=12 Identities=33% Similarity=0.271 Sum_probs=10.3
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 40 GsGKSTLl~~l~ 51 (221)
T cd03244 40 GSGKSSLLLALF 51 (221)
T ss_pred CCCHHHHHHHHH
Confidence 589999999875
No 324
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=66.48 E-value=3.4 Score=33.54 Aligned_cols=12 Identities=42% Similarity=0.623 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 48 GsGKSTLl~~l~ 59 (259)
T PRK14274 48 GCGKSTFIKTLN 59 (259)
T ss_pred CCCHHHHHHHHH
Confidence 589999999886
No 325
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=66.47 E-value=3.3 Score=33.33 Aligned_cols=12 Identities=25% Similarity=0.575 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 39 GsGKSTLl~~i~ 50 (250)
T PRK14240 39 GCGKSTFLRTLN 50 (250)
T ss_pred CCCHHHHHHHHh
Confidence 589999999986
No 326
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=66.46 E-value=3.3 Score=32.07 Aligned_cols=12 Identities=33% Similarity=0.479 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 45 GsGKStLl~~i~ 56 (194)
T cd03213 45 GAGKSTLLNALA 56 (194)
T ss_pred CCCHHHHHHHHh
Confidence 589999999886
No 327
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=66.46 E-value=3.4 Score=33.28 Aligned_cols=12 Identities=25% Similarity=0.440 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 37 GsGKSTLl~~l~ 48 (247)
T TIGR00972 37 GCGKSTLLRSLN 48 (247)
T ss_pred CCCHHHHHHHHh
Confidence 589999999876
No 328
>KOG1534|consensus
Probab=66.38 E-value=3.1 Score=33.17 Aligned_cols=12 Identities=42% Similarity=0.476 Sum_probs=10.2
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
+||||||++++-
T Consensus 13 gSGKSTyC~~~~ 24 (273)
T KOG1534|consen 13 GSGKSTYCSSMY 24 (273)
T ss_pred CCCcchHHHHHH
Confidence 589999999864
No 329
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=66.34 E-value=3.5 Score=32.27 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=11.6
Q ss_pred CCchhHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALL 14 (223)
Q Consensus 1 ~~gks~~~~~i~~~ 14 (223)
+|||||+++.+.-.
T Consensus 16 GsGKSTl~~~l~~~ 29 (207)
T TIGR00235 16 GSGKTTVARKIYEQ 29 (207)
T ss_pred CCCHHHHHHHHHHH
Confidence 58999999998653
No 330
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=66.34 E-value=3.3 Score=33.47 Aligned_cols=12 Identities=17% Similarity=0.268 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 41 GsGKSTLl~~l~ 52 (255)
T PRK11300 41 GAGKTTVFNCLT 52 (255)
T ss_pred CCCHHHHHHHHh
Confidence 589999999876
No 331
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=66.34 E-value=4.5 Score=31.29 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=14.3
Q ss_pred CCchhHHHHHHHHHHHHHhhCCc
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCY 23 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~ 23 (223)
.||||||.+.+.. .|.+.|..
T Consensus 9 gSGKTTla~~L~~--~L~~~~~~ 29 (194)
T PF00485_consen 9 GSGKTTLAKRLAQ--ILNKRGIP 29 (194)
T ss_dssp TSSHHHHHHHHHH--HHTTCTTT
T ss_pred CCCHHHHHHHHHH--HhCccCcC
Confidence 5899999997654 34454443
No 332
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=66.32 E-value=4 Score=33.86 Aligned_cols=73 Identities=14% Similarity=0.234 Sum_probs=35.6
Q ss_pred CCchhHHHHHHHHHHHHHh---hCCcccCCcceeccccceee--e-cccccccccccchHHHHHHHHHHHHHhcCCCeEE
Q psy7339 1 MSGKSVYIKQVALLQIMAQ---VGCYVPASLAEFRLADHIYT--R-IGFNDSIECNASTFALEMKEIAHIIQFLTPRSLI 74 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~---~g~~vpa~~~~~~~~d~I~~--~-~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vv 74 (223)
++||||++..++......+ --..+.++..++...+.+.. . ++.+-.. ..--.++.+.+..+ .+..+|
T Consensus 204 GvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~----~~~~~~l~~~l~~~---~~~d~v 276 (282)
T TIGR03499 204 GVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKV----ARDPKELRKALDRL---RDKDLI 276 (282)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceec----cCCHHHHHHHHHHc---cCCCEE
Confidence 5899999987776554331 12345566554433333311 1 0110000 01123455555544 345788
Q ss_pred EEcCCC
Q psy7339 75 LVDELC 80 (223)
Q Consensus 75 vl~~~g 80 (223)
++|..|
T Consensus 277 liDt~G 282 (282)
T TIGR03499 277 LIDTAG 282 (282)
T ss_pred EEeCCC
Confidence 888654
No 333
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=66.27 E-value=18 Score=25.36 Aligned_cols=16 Identities=19% Similarity=0.212 Sum_probs=13.4
Q ss_pred CCchhHHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQI 16 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~ 16 (223)
++|||++++.+.-...
T Consensus 29 G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 29 GTGKTTLARAIANELF 44 (151)
T ss_pred CCCHHHHHHHHHHHhh
Confidence 5899999999987665
No 334
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=66.18 E-value=3.4 Score=33.16 Aligned_cols=12 Identities=42% Similarity=0.501 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 39 GsGKSTLl~~l~ 50 (241)
T PRK14250 39 GAGKSTLIKLIN 50 (241)
T ss_pred CCCHHHHHHHHh
Confidence 589999999876
No 335
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=66.16 E-value=3.5 Score=32.63 Aligned_cols=12 Identities=33% Similarity=0.349 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 50 GsGKSTLl~~l~ 61 (226)
T cd03248 50 GSGKSTVVALLE 61 (226)
T ss_pred CCCHHHHHHHHh
Confidence 589999999876
No 336
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=66.15 E-value=6 Score=29.53 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=15.3
Q ss_pred CchhHHHHHHHHHHHHHhhCCcccCCcce
Q psy7339 2 SGKSVYIKQVALLQIMAQVGCYVPASLAE 30 (223)
Q Consensus 2 ~gks~~~~~i~~~~~l~~~g~~vpa~~~~ 30 (223)
+||||+++.+.-. |.++-.+.++
T Consensus 10 tGKTTL~~~L~~~------g~~~v~E~ar 32 (163)
T PF13521_consen 10 TGKTTLIEALAAR------GYPVVPEYAR 32 (163)
T ss_dssp SHHHHHHHHHHHH------T-EEE--TTH
T ss_pred CCHHHHHHHHHHc------CCeEEeecHH
Confidence 7999999988744 7776655555
No 337
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=66.13 E-value=3.4 Score=33.29 Aligned_cols=12 Identities=25% Similarity=0.484 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 39 GsGKSTLl~~i~ 50 (250)
T PRK14245 39 GCGKSTFLRLFN 50 (250)
T ss_pred CCCHHHHHHHHh
Confidence 589999999986
No 338
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=66.10 E-value=3.5 Score=33.27 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 41 GsGKSTLl~~i~ 52 (251)
T PRK14244 41 GCGKSTFLRCFN 52 (251)
T ss_pred CCCHHHHHHHHH
Confidence 589999999876
No 339
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=66.09 E-value=3.4 Score=33.31 Aligned_cols=12 Identities=33% Similarity=0.650 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 41 GsGKSTLl~~l~ 52 (252)
T PRK14255 41 GCGKSTYLRTLN 52 (252)
T ss_pred CCCHHHHHHHHh
Confidence 589999999985
No 340
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=66.04 E-value=13 Score=30.23 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=14.3
Q ss_pred CCchhHHHHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQIMA 18 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~ 18 (223)
.+|||+|+.+++......
T Consensus 40 G~GKT~l~~~~~~~~~~~ 57 (271)
T cd01122 40 GVGKTTFLREYALDLITQ 57 (271)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 479999999998776543
No 341
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=66.03 E-value=3.6 Score=33.02 Aligned_cols=13 Identities=31% Similarity=0.273 Sum_probs=10.7
Q ss_pred CCchhHHHHHHHH
Q psy7339 1 MSGKSVYIKQVAL 13 (223)
Q Consensus 1 ~~gks~~~~~i~~ 13 (223)
+|||||+|..++.
T Consensus 41 GSGKSTLLniig~ 53 (226)
T COG1136 41 GSGKSTLLNLLGG 53 (226)
T ss_pred CCCHHHHHHHHhc
Confidence 5899999987764
No 342
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=66.02 E-value=3.4 Score=33.91 Aligned_cols=12 Identities=42% Similarity=0.440 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 43 GsGKSTLl~~l~ 54 (272)
T PRK15056 43 GSGKSTLFKALM 54 (272)
T ss_pred CCCHHHHHHHHh
Confidence 589999999885
No 343
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=65.98 E-value=3.5 Score=33.28 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 40 GsGKSTLl~~l~ 51 (252)
T PRK14256 40 GCGKSTVLRSIN 51 (252)
T ss_pred CCCHHHHHHHHH
Confidence 589999999886
No 344
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=65.93 E-value=3.4 Score=33.69 Aligned_cols=12 Identities=25% Similarity=0.265 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 47 GsGKSTLl~~l~ 58 (265)
T TIGR02769 47 GCGKSTLARLLL 58 (265)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 345
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=65.70 E-value=3.5 Score=34.17 Aligned_cols=12 Identities=42% Similarity=0.393 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 47 GsGKSTLl~~l~ 58 (289)
T PRK13645 47 GSGKSTMIQLTN 58 (289)
T ss_pred CCCHHHHHHHHh
Confidence 589999999986
No 346
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=65.67 E-value=3.5 Score=32.99 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=10.8
Q ss_pred CCchhHHHHHHHH
Q psy7339 1 MSGKSVYIKQVAL 13 (223)
Q Consensus 1 ~~gks~~~~~i~~ 13 (223)
++||||++|.++=
T Consensus 38 GsGKSTLl~~l~G 50 (242)
T TIGR03411 38 GAGKTTMMDVITG 50 (242)
T ss_pred CCCHHHHHHHHhC
Confidence 5899999998763
No 347
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=65.66 E-value=3.6 Score=32.07 Aligned_cols=12 Identities=33% Similarity=0.301 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 44 GsGKSTLl~~l~ 55 (207)
T cd03369 44 GAGKSTLILALF 55 (207)
T ss_pred CCCHHHHHHHHh
Confidence 489999999875
No 348
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=65.51 E-value=3.6 Score=33.16 Aligned_cols=12 Identities=33% Similarity=0.404 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 39 GsGKSTLl~~i~ 50 (250)
T PRK14247 39 GSGKSTLLRVFN 50 (250)
T ss_pred CCCHHHHHHHHh
Confidence 589999999876
No 349
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=65.35 E-value=3.6 Score=33.71 Aligned_cols=12 Identities=25% Similarity=0.409 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 49 GsGKSTLl~~l~ 60 (269)
T PRK14259 49 GCGKSTVLRSLN 60 (269)
T ss_pred CCCHHHHHHHHh
Confidence 589999999986
No 350
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=65.27 E-value=3.7 Score=32.89 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 38 GsGKSTLl~~l~ 49 (242)
T PRK11124 38 GAGKSSLLRVLN 49 (242)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 351
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=65.17 E-value=3.7 Score=33.53 Aligned_cols=13 Identities=23% Similarity=0.513 Sum_probs=11.1
Q ss_pred CCchhHHHHHHHH
Q psy7339 1 MSGKSVYIKQVAL 13 (223)
Q Consensus 1 ~~gks~~~~~i~~ 13 (223)
++||||++|.++=
T Consensus 57 GsGKSTLl~~l~G 69 (268)
T PRK14248 57 GCGKSTFLRSINR 69 (268)
T ss_pred CCCHHHHHHHHHh
Confidence 5899999998854
No 352
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=65.16 E-value=3.7 Score=32.86 Aligned_cols=12 Identities=33% Similarity=0.462 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 37 GsGKSTLl~~l~ 48 (240)
T PRK09493 37 GSGKSTLLRCIN 48 (240)
T ss_pred CCCHHHHHHHHh
Confidence 589999999876
No 353
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=64.99 E-value=3.9 Score=31.64 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=12.2
Q ss_pred CCchhHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQ 15 (223)
Q Consensus 1 ~~gks~~~~~i~~~~ 15 (223)
+|||||+++.+.-..
T Consensus 9 GsGKSTl~~~l~~~l 23 (198)
T cd02023 9 GSGKTTVAEEIIEQL 23 (198)
T ss_pred CCCHHHHHHHHHHHh
Confidence 589999999986543
No 354
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=64.98 E-value=3.6 Score=33.42 Aligned_cols=12 Identities=33% Similarity=0.564 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 40 GsGKSTLl~~i~ 51 (262)
T PRK09984 40 GSGKSTLLRHLS 51 (262)
T ss_pred CCCHHHHHHHHh
Confidence 589999999876
No 355
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=64.98 E-value=3.7 Score=33.17 Aligned_cols=12 Identities=33% Similarity=0.409 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 36 GsGKSTLl~~l~ 47 (252)
T TIGR03005 36 GSGKSTILRILM 47 (252)
T ss_pred CCCHHHHHHHHh
Confidence 589999999874
No 356
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=64.98 E-value=3.6 Score=33.85 Aligned_cols=12 Identities=33% Similarity=0.387 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 43 GsGKSTLl~~i~ 54 (280)
T PRK13649 43 GSGKSTIMQLLN 54 (280)
T ss_pred CCCHHHHHHHHh
Confidence 589999999876
No 357
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=64.95 E-value=3.8 Score=32.99 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 38 GsGKSTLl~~l~ 49 (246)
T PRK14269 38 GCGKSTFLRCFN 49 (246)
T ss_pred CCCHHHHHHHHh
Confidence 589999999886
No 358
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=64.88 E-value=3.4 Score=33.33 Aligned_cols=12 Identities=50% Similarity=0.448 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 43 GsGKSTLl~~i~ 54 (252)
T CHL00131 43 GSGKSTLSKVIA 54 (252)
T ss_pred CCCHHHHHHHHc
Confidence 589999999875
No 359
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=64.81 E-value=3.9 Score=31.85 Aligned_cols=12 Identities=33% Similarity=0.495 Sum_probs=10.3
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 36 GsGKSTLl~~l~ 47 (201)
T cd03231 36 GSGKTTLLRILA 47 (201)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 360
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=64.69 E-value=3.8 Score=33.09 Aligned_cols=12 Identities=25% Similarity=0.387 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 40 GsGKSTLl~~l~ 51 (253)
T PRK14267 40 GCGKSTLLRTFN 51 (253)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 361
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=64.69 E-value=3.9 Score=33.45 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=10.8
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 55 GsGKSTLl~~l~ 66 (267)
T PRK14235 55 GCGKSTFLRCLN 66 (267)
T ss_pred CCCHHHHHHHHH
Confidence 589999999986
No 362
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=64.65 E-value=3.9 Score=31.61 Aligned_cols=12 Identities=33% Similarity=0.490 Sum_probs=10.1
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 36 GsGKSTLl~~l~ 47 (195)
T PRK13541 36 GCGKSSLLRMIA 47 (195)
T ss_pred CCCHHHHHHHHh
Confidence 589999999874
No 363
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=64.60 E-value=4.5 Score=25.61 Aligned_cols=15 Identities=40% Similarity=0.262 Sum_probs=12.5
Q ss_pred CCchhHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQ 15 (223)
Q Consensus 1 ~~gks~~~~~i~~~~ 15 (223)
.|||||+.+.+.-..
T Consensus 9 gsGKst~~~~l~~~l 23 (69)
T cd02019 9 GSGKSTVAKKLAEQL 23 (69)
T ss_pred CCCHHHHHHHHHHHh
Confidence 489999999887665
No 364
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=64.60 E-value=3.8 Score=33.55 Aligned_cols=12 Identities=33% Similarity=0.462 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 60 GsGKSTLl~~L~ 71 (269)
T cd03294 60 GSGKSTLLRCIN 71 (269)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 365
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=64.53 E-value=14 Score=31.93 Aligned_cols=78 Identities=22% Similarity=0.189 Sum_probs=36.8
Q ss_pred CCchhHHHHHHHHHHHHH-hhCCcccCCcceeccccce---eeeccc-ccccccccchHHHHHHHHHHHHHhcCCCeEEE
Q psy7339 1 MSGKSVYIKQVALLQIMA-QVGCYVPASLAEFRLADHI---YTRIGF-NDSIECNASTFALEMKEIAHIIQFLTPRSLIL 75 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~-~~g~~vpa~~~~~~~~d~I---~~~~~~-~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvv 75 (223)
..||||++.+++....-. .-.+|+..+... +.+ ..+++. .++........+++ +.+.++. ...++||
T Consensus 92 G~GKStLllq~a~~~a~~g~~VlYvs~EEs~----~qi~~Ra~rlg~~~~~l~l~~e~~le~---I~~~i~~-~~~~lVV 163 (372)
T cd01121 92 GIGKSTLLLQVAARLAKRGGKVLYVSGEESP----EQIKLRADRLGISTENLYLLAETNLED---ILASIEE-LKPDLVI 163 (372)
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEEEECCcCH----HHHHHHHHHcCCCcccEEEEccCcHHH---HHHHHHh-cCCcEEE
Confidence 479999999998654321 123444433211 111 111111 11111112222333 3444432 4578999
Q ss_pred EcCCCCCcCCC
Q psy7339 76 VDELCRAGIEP 86 (223)
Q Consensus 76 l~~~g~~F~aG 86 (223)
+|+....+...
T Consensus 164 IDSIq~l~~~~ 174 (372)
T cd01121 164 IDSIQTVYSSE 174 (372)
T ss_pred EcchHHhhccc
Confidence 99986555443
No 366
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=64.36 E-value=3.9 Score=33.19 Aligned_cols=13 Identities=38% Similarity=0.519 Sum_probs=11.2
Q ss_pred CCchhHHHHHHHH
Q psy7339 1 MSGKSVYIKQVAL 13 (223)
Q Consensus 1 ~~gks~~~~~i~~ 13 (223)
++||||++|.++=
T Consensus 43 GsGKSTLlk~l~G 55 (259)
T PRK14260 43 GCGKSTFIKTLNR 55 (259)
T ss_pred CCCHHHHHHHHHh
Confidence 5899999999874
No 367
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=64.34 E-value=3.9 Score=32.95 Aligned_cols=12 Identities=17% Similarity=0.456 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 39 GsGKSTLl~~i~ 50 (250)
T PRK14262 39 GCGKTTLLRSIN 50 (250)
T ss_pred CCCHHHHHHHHh
Confidence 589999999876
No 368
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=64.33 E-value=3.9 Score=32.97 Aligned_cols=12 Identities=25% Similarity=0.429 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 40 GsGKSTLl~~l~ 51 (251)
T PRK14249 40 GCGKSTLLRALN 51 (251)
T ss_pred CCCHHHHHHHHh
Confidence 589999999985
No 369
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=64.28 E-value=3.8 Score=33.72 Aligned_cols=12 Identities=42% Similarity=0.545 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 37 GsGKSTLl~~la 48 (272)
T PRK13547 37 GAGKSTLLKALA 48 (272)
T ss_pred CCCHHHHHHHHh
Confidence 589999999885
No 370
>PRK08233 hypothetical protein; Provisional
Probab=64.22 E-value=4.2 Score=30.73 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=11.6
Q ss_pred CCchhHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALL 14 (223)
Q Consensus 1 ~~gks~~~~~i~~~ 14 (223)
+|||||+.+.+.-.
T Consensus 13 GsGKtTla~~L~~~ 26 (182)
T PRK08233 13 GGGKTTLTERLTHK 26 (182)
T ss_pred CCCHHHHHHHHHhh
Confidence 58999999888754
No 371
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=64.11 E-value=4 Score=32.85 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=11.1
Q ss_pred CCchhHHHHHHHH
Q psy7339 1 MSGKSVYIKQVAL 13 (223)
Q Consensus 1 ~~gks~~~~~i~~ 13 (223)
++||||++|.++=
T Consensus 39 GsGKSTLl~~l~G 51 (249)
T PRK14253 39 GCGKSTLLRCLNR 51 (249)
T ss_pred CCCHHHHHHHHHh
Confidence 5899999999863
No 372
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=64.04 E-value=3.5 Score=32.16 Aligned_cols=12 Identities=42% Similarity=0.409 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||+++.++
T Consensus 43 GsGKSTLl~~l~ 54 (202)
T cd03233 43 GSGCSTLLKALA 54 (202)
T ss_pred CCCHHHHHHHhc
Confidence 589999999875
No 373
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=64.01 E-value=3.9 Score=33.24 Aligned_cols=12 Identities=25% Similarity=0.495 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 38 GsGKSTLl~~i~ 49 (258)
T PRK13548 38 GAGKSTLLRALS 49 (258)
T ss_pred CCCHHHHHHHHh
Confidence 589999999886
No 374
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=64.01 E-value=3.9 Score=33.75 Aligned_cols=12 Identities=42% Similarity=0.351 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 43 GaGKSTLl~~l~ 54 (282)
T PRK13640 43 GSGKSTISKLIN 54 (282)
T ss_pred CCcHHHHHHHHh
Confidence 589999999985
No 375
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=64.00 E-value=4 Score=32.36 Aligned_cols=12 Identities=17% Similarity=0.448 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 16 GsGKSTLl~~l~ 27 (223)
T TIGR03771 16 GAGKTTLLRAIL 27 (223)
T ss_pred CCCHHHHHHHHh
Confidence 589999999987
No 376
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=63.88 E-value=4 Score=32.86 Aligned_cols=13 Identities=15% Similarity=0.485 Sum_probs=10.8
Q ss_pred CCchhHHHHHHHH
Q psy7339 1 MSGKSVYIKQVAL 13 (223)
Q Consensus 1 ~~gks~~~~~i~~ 13 (223)
++||||++|.|+=
T Consensus 40 GsGKSTLl~~i~G 52 (252)
T PRK14272 40 GCGKTTFLRAINR 52 (252)
T ss_pred CCCHHHHHHHHhc
Confidence 5899999998753
No 377
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=63.83 E-value=4 Score=33.54 Aligned_cols=12 Identities=33% Similarity=0.293 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 38 GsGKSTLl~~l~ 49 (274)
T PRK13644 38 GSGKSTLALHLN 49 (274)
T ss_pred CCCHHHHHHHHh
Confidence 589999999886
No 378
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=63.83 E-value=21 Score=30.14 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=14.4
Q ss_pred CCchhHHHHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQIMA 18 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~ 18 (223)
++|||+|+.+++....+.
T Consensus 106 g~GKT~l~~~~~~~~~~~ 123 (316)
T TIGR02239 106 RTGKTQLCHTLAVTCQLP 123 (316)
T ss_pred CCCcCHHHHHHHHHHhhh
Confidence 479999999998866553
No 379
>PRK14974 cell division protein FtsY; Provisional
Probab=63.83 E-value=19 Score=30.68 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=38.1
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcc---cCCcceecccccee---eecccccccccccchHHHHHHHHHHHHHhcCCCeEE
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYV---PASLAEFRLADHIY---TRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLI 74 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~v---pa~~~~~~~~d~I~---~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vv 74 (223)
++||||++..++.. |.+.|..| .++.++....+++- ..++.+-......+....-+.++++.... .+..+|
T Consensus 150 GvGKTTtiakLA~~--l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~-~~~DvV 226 (336)
T PRK14974 150 GTGKTTTIAKLAYY--LKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKA-RGIDVV 226 (336)
T ss_pred CCCHHHHHHHHHHH--HHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHh-CCCCEE
Confidence 58999999999853 45555433 34444433333321 11111100001111222223344444433 234589
Q ss_pred EEcCCCCCc
Q psy7339 75 LVDELCRAG 83 (223)
Q Consensus 75 vl~~~g~~F 83 (223)
+++..|+.-
T Consensus 227 LIDTaGr~~ 235 (336)
T PRK14974 227 LIDTAGRMH 235 (336)
T ss_pred EEECCCccC
Confidence 999888654
No 380
>PRK08118 topology modulation protein; Reviewed
Probab=63.76 E-value=4.3 Score=30.76 Aligned_cols=14 Identities=36% Similarity=0.304 Sum_probs=11.7
Q ss_pred CCchhHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALL 14 (223)
Q Consensus 1 ~~gks~~~~~i~~~ 14 (223)
+|||||+.|.++-.
T Consensus 11 GsGKSTlak~L~~~ 24 (167)
T PRK08118 11 GSGKSTLARQLGEK 24 (167)
T ss_pred CCCHHHHHHHHHHH
Confidence 58999999988754
No 381
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=63.73 E-value=4.1 Score=33.32 Aligned_cols=12 Identities=50% Similarity=0.454 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 49 GsGKSTLl~~l~ 60 (267)
T PRK15112 49 GSGKSTLAKMLA 60 (267)
T ss_pred CCCHHHHHHHHh
Confidence 589999999886
No 382
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=63.70 E-value=4.1 Score=33.40 Aligned_cols=12 Identities=50% Similarity=0.697 Sum_probs=10.8
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 60 GsGKSTLl~~i~ 71 (271)
T PRK14238 60 GCGKSTYIKTLN 71 (271)
T ss_pred CCCHHHHHHHHH
Confidence 589999999987
No 383
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=63.59 E-value=4 Score=33.55 Aligned_cols=12 Identities=25% Similarity=0.265 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 38 GsGKSTLl~~i~ 49 (275)
T PRK13639 38 GAGKSTLFLHFN 49 (275)
T ss_pred CCCHHHHHHHHh
Confidence 589999999874
No 384
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=63.56 E-value=4.1 Score=32.84 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 41 GsGKSTLl~~l~ 52 (252)
T PRK14239 41 GSGKSTLLRSIN 52 (252)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 385
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=63.38 E-value=4.1 Score=33.04 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
+|||||++|.|+
T Consensus 48 GsGKSTLl~~i~ 59 (258)
T PRK14268 48 GCGKSTFIRCLN 59 (258)
T ss_pred CCCHHHHHHHHh
Confidence 589999999986
No 386
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=63.34 E-value=4.2 Score=32.86 Aligned_cols=12 Identities=25% Similarity=0.575 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 43 GsGKSTLl~~l~ 54 (254)
T PRK14273 43 GCGKSTFLRTLN 54 (254)
T ss_pred CCCHHHHHHHHh
Confidence 589999999876
No 387
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=63.21 E-value=5 Score=31.69 Aligned_cols=12 Identities=42% Similarity=0.348 Sum_probs=10.9
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++++|.
T Consensus 35 GaGKSTll~~i~ 46 (212)
T cd03274 35 GSGKSNVIDSML 46 (212)
T ss_pred CCCHHHHHHHHH
Confidence 589999999986
No 388
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=63.19 E-value=4.2 Score=33.42 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 56 GsGKSTLl~~l~ 67 (274)
T PRK14265 56 GCGKSTLLRCFN 67 (274)
T ss_pred CCCHHHHHHHHh
Confidence 589999999876
No 389
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=63.12 E-value=3.8 Score=32.90 Aligned_cols=12 Identities=42% Similarity=0.354 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 37 GsGKSTLl~~l~ 48 (248)
T PRK09580 37 GSGKSTLSATLA 48 (248)
T ss_pred CCCHHHHHHHHc
Confidence 589999999875
No 390
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=63.10 E-value=4.2 Score=31.64 Aligned_cols=12 Identities=42% Similarity=0.432 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 36 GsGKStLl~~l~ 47 (200)
T cd03217 36 GSGKSTLAKTIM 47 (200)
T ss_pred CCCHHHHHHHHh
Confidence 589999999874
No 391
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=63.09 E-value=4.2 Score=33.65 Aligned_cols=12 Identities=42% Similarity=0.548 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
+|||||++|.++
T Consensus 43 GsGKSTLl~~L~ 54 (286)
T PRK13646 43 GSGKSTLIQNIN 54 (286)
T ss_pred CCCHHHHHHHHh
Confidence 589999999986
No 392
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=63.07 E-value=4.3 Score=32.00 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 41 GsGKStLl~~l~ 52 (220)
T TIGR02982 41 GSGKTTLLTLIG 52 (220)
T ss_pred CCCHHHHHHHHh
Confidence 589999999883
No 393
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=63.02 E-value=4.2 Score=33.65 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=10.9
Q ss_pred CCchhHHHHHHHH
Q psy7339 1 MSGKSVYIKQVAL 13 (223)
Q Consensus 1 ~~gks~~~~~i~~ 13 (223)
++||||++|.|+=
T Consensus 43 GaGKSTLl~~l~G 55 (287)
T PRK13641 43 GSGKSTLMQHFNA 55 (287)
T ss_pred CCCHHHHHHHHhc
Confidence 5899999998853
No 394
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=63.01 E-value=4.6 Score=28.12 Aligned_cols=11 Identities=36% Similarity=0.546 Sum_probs=10.2
Q ss_pred CchhHHHHHHH
Q psy7339 2 SGKSVYIKQVA 12 (223)
Q Consensus 2 ~gks~~~~~i~ 12 (223)
+|||||++++.
T Consensus 10 ~GKSTlin~l~ 20 (116)
T PF01926_consen 10 VGKSTLINALT 20 (116)
T ss_dssp SSHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 79999999987
No 395
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=63.00 E-value=4.2 Score=33.93 Aligned_cols=12 Identities=25% Similarity=0.420 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 29 GaGKSTLl~~l~ 40 (302)
T TIGR01188 29 GAGKTTTIRMLT 40 (302)
T ss_pred CCCHHHHHHHHh
Confidence 589999999886
No 396
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=62.99 E-value=4.2 Score=32.82 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 42 GsGKSTLl~~l~ 53 (253)
T PRK14261 42 GCGKSTLLRCFN 53 (253)
T ss_pred CCCHHHHHHHHh
Confidence 589999999986
No 397
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=62.95 E-value=4.1 Score=33.49 Aligned_cols=12 Identities=33% Similarity=0.443 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
+|||||+||.|.
T Consensus 37 GsGKTTtLkMIN 48 (309)
T COG1125 37 GSGKTTTLKMIN 48 (309)
T ss_pred CCcHHHHHHHHh
Confidence 589999999885
No 398
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=62.92 E-value=4.2 Score=33.30 Aligned_cols=12 Identities=42% Similarity=0.332 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 45 GsGKSTLl~~l~ 56 (271)
T PRK13632 45 GSGKSTISKILT 56 (271)
T ss_pred CCCHHHHHHHHh
Confidence 589999999876
No 399
>KOG0062|consensus
Probab=62.91 E-value=4.3 Score=36.49 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=15.9
Q ss_pred CCchhHHHHHHHHHHHHHhh-CCccc
Q psy7339 1 MSGKSVYIKQVALLQIMAQV-GCYVP 25 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~-g~~vp 25 (223)
+.||||+||.|+- +|+ |++++
T Consensus 116 G~GKsTLLRaia~----~~v~~f~ve 137 (582)
T KOG0062|consen 116 GIGKSTLLRAIAN----GQVSGFHVE 137 (582)
T ss_pred CCcHHHHHHHHHh----cCcCccCch
Confidence 4799999999998 454 55555
No 400
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=62.78 E-value=4.3 Score=33.84 Aligned_cols=12 Identities=33% Similarity=0.479 Sum_probs=10.3
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 41 GAGKTTllk~l~ 52 (293)
T COG1131 41 GAGKTTLLKILA 52 (293)
T ss_pred CCCHHHHHHHHh
Confidence 589999999874
No 401
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=62.77 E-value=4.4 Score=33.12 Aligned_cols=12 Identities=42% Similarity=0.714 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 56 GsGKSTLl~~l~ 67 (267)
T PRK14237 56 GSGKSTYLRSLN 67 (267)
T ss_pred CCCHHHHHHHHH
Confidence 589999999875
No 402
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=62.77 E-value=4.3 Score=32.88 Aligned_cols=12 Identities=42% Similarity=0.409 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 38 GsGKSTLl~~l~ 49 (255)
T PRK11231 38 GCGKSTLLKCFA 49 (255)
T ss_pred CCCHHHHHHHHh
Confidence 589999999886
No 403
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=62.59 E-value=4.3 Score=33.87 Aligned_cols=12 Identities=25% Similarity=0.290 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 40 GaGKSTLl~~l~ 51 (303)
T TIGR01288 40 GAGKSTIARMLL 51 (303)
T ss_pred CCCHHHHHHHHh
Confidence 589999999985
No 404
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=62.49 E-value=4.4 Score=33.13 Aligned_cols=12 Identities=42% Similarity=0.324 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 45 GsGKSTLl~~i~ 56 (269)
T PRK13648 45 GSGKSTIAKLMI 56 (269)
T ss_pred CCCHHHHHHHHh
Confidence 589999999886
No 405
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=62.45 E-value=4 Score=33.31 Aligned_cols=12 Identities=42% Similarity=0.501 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 47 GsGKSTLl~~l~ 58 (265)
T PRK10575 47 GSGKSTLLKMLG 58 (265)
T ss_pred CCCHHHHHHHHc
Confidence 589999999876
No 406
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=62.41 E-value=4.5 Score=32.62 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 40 GsGKSTLl~~l~ 51 (251)
T PRK14270 40 GCGKSTFLRCLN 51 (251)
T ss_pred CCCHHHHHHHHH
Confidence 589999999886
No 407
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=62.27 E-value=4.4 Score=34.76 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 40 GsGKSTLLr~ia 51 (353)
T TIGR03265 40 GCGKTTLLRIIA 51 (353)
T ss_pred CCCHHHHHHHHH
Confidence 589999999886
No 408
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=62.24 E-value=4.2 Score=32.02 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||+++.|.
T Consensus 38 GsGKSTll~~i~ 49 (213)
T cd03279 38 GAGKSTILDAIT 49 (213)
T ss_pred CCCHHHHHHHhe
Confidence 489999999995
No 409
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=62.16 E-value=5.8 Score=33.56 Aligned_cols=37 Identities=27% Similarity=0.315 Sum_probs=28.7
Q ss_pred HHHHHcCCCCCHHHHHHcCccccccCChhHHHhHHHH
Q psy7339 152 SELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPR 188 (223)
Q Consensus 152 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~ 188 (223)
..-+.+|+.+++++|++.||||++..-++....+.+.
T Consensus 236 ~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~~ 272 (317)
T COG0616 236 VDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAEL 272 (317)
T ss_pred HHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHHh
Confidence 4567889999999999999999998765554444444
No 410
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=62.14 E-value=4.5 Score=34.22 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 6 GsGKSTLl~~ia 17 (325)
T TIGR01187 6 GCGKTTLLRLLA 17 (325)
T ss_pred CCCHHHHHHHHH
Confidence 589999999986
No 411
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=62.10 E-value=5 Score=34.74 Aligned_cols=37 Identities=11% Similarity=0.025 Sum_probs=22.7
Q ss_pred CCchhHHHHHHHHHHHHHhh---CCcccCCcceeccccce
Q psy7339 1 MSGKSVYIKQVALLQIMAQV---GCYVPASLAEFRLADHI 37 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~---g~~vpa~~~~~~~~d~I 37 (223)
++||||++..++....+.+- -.++..+..++.-.+.+
T Consensus 147 GvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL 186 (374)
T PRK14722 147 GVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQL 186 (374)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHH
Confidence 57999999999887654421 13455565554444333
No 412
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=61.99 E-value=4.5 Score=32.73 Aligned_cols=13 Identities=31% Similarity=0.089 Sum_probs=10.8
Q ss_pred CCchhHHHHHHHH
Q psy7339 1 MSGKSVYIKQVAL 13 (223)
Q Consensus 1 ~~gks~~~~~i~~ 13 (223)
++||||++|.+.=
T Consensus 39 GsGKSTLl~~l~G 51 (254)
T PRK10418 39 GSGKSLTCAAALG 51 (254)
T ss_pred CCCHHHHHHHHhC
Confidence 5899999998753
No 413
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=61.94 E-value=4.7 Score=31.85 Aligned_cols=12 Identities=33% Similarity=0.509 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||+++.++
T Consensus 36 GsGKSTLl~~l~ 47 (223)
T TIGR03740 36 GAGKSTLLKMIT 47 (223)
T ss_pred CCCHHHHHHHHh
Confidence 589999999876
No 414
>KOG0099|consensus
Probab=61.94 E-value=6.5 Score=32.41 Aligned_cols=45 Identities=31% Similarity=0.352 Sum_probs=28.0
Q ss_pred CchhHHHHHHH--------------------------HHHHHHhhCCccc---CCcce-eccccceeeecccccc
Q psy7339 2 SGKSVYIKQVA--------------------------LLQIMAQVGCYVP---ASLAE-FRLADHIYTRIGFNDS 46 (223)
Q Consensus 2 ~gks~~~~~i~--------------------------~~~~l~~~g~~vp---a~~~~-~~~~d~I~~~~~~~~~ 46 (223)
|||||.+|+.- +..+.++++--+| -...+ -...|.|...++.++.
T Consensus 51 SGKsTIvKQMRILHvnGF~~~EkreKI~dI~~Ni~eai~~iv~aM~~l~p~v~l~~~~~~~~~dYIls~~~~~~~ 125 (379)
T KOG0099|consen 51 SGKSTIVKQMRILHVNGFNDEEKREKIQDIKNNIKEAILTIVGAMSNLVPPVELANPENQFRVDYILSVMNSPDF 125 (379)
T ss_pred ccchhhhhhhheeeecCCChHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCcccCCcccchhHHHHHhcCCCCcc
Confidence 79999999863 3456666665554 22222 3446777777666654
No 415
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.90 E-value=9.8 Score=32.72 Aligned_cols=16 Identities=19% Similarity=0.044 Sum_probs=12.9
Q ss_pred CCchhHHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQI 16 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~ 16 (223)
+.||||+++.++-...
T Consensus 48 G~GKTtla~~la~~l~ 63 (363)
T PRK14961 48 GVGKTTIARLLAKSLN 63 (363)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 4799999999876554
No 416
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=61.89 E-value=4.8 Score=31.35 Aligned_cols=11 Identities=36% Similarity=0.383 Sum_probs=9.6
Q ss_pred CCchhHHHHHH
Q psy7339 1 MSGKSVYIKQV 11 (223)
Q Consensus 1 ~~gks~~~~~i 11 (223)
+|||||+++++
T Consensus 11 GSGKTTll~~l 21 (198)
T cd01131 11 GSGKSTTLAAM 21 (198)
T ss_pred CCCHHHHHHHH
Confidence 58999999885
No 417
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=61.86 E-value=4.3 Score=32.88 Aligned_cols=12 Identities=42% Similarity=0.523 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 37 GsGKSTLl~~i~ 48 (256)
T TIGR03873 37 GSGKSTLLRLLA 48 (256)
T ss_pred CCCHHHHHHHHc
Confidence 589999999985
No 418
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=61.84 E-value=4.8 Score=28.30 Aligned_cols=12 Identities=17% Similarity=0.110 Sum_probs=10.1
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
.+||||+++.+.
T Consensus 25 GsGKSTLl~~l~ 36 (107)
T cd00820 25 GIGKTELALELI 36 (107)
T ss_pred CCCHHHHHHHhh
Confidence 489999999964
No 419
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=61.82 E-value=4.2 Score=33.18 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 43 GsGKSTLl~~i~ 54 (265)
T PRK10253 43 GCGKSTLLRTLS 54 (265)
T ss_pred CCCHHHHHHHHc
Confidence 589999999875
No 420
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=61.79 E-value=4.5 Score=34.74 Aligned_cols=12 Identities=42% Similarity=0.526 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 40 GsGKSTLLr~ia 51 (356)
T PRK11650 40 GCGKSTLLRMVA 51 (356)
T ss_pred CCcHHHHHHHHH
Confidence 589999999984
No 421
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=61.78 E-value=4.5 Score=35.05 Aligned_cols=12 Identities=25% Similarity=0.451 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
+|||||++|.|+
T Consensus 50 GsGKSTLLr~Ia 61 (375)
T PRK09452 50 GCGKTTVLRLIA 61 (375)
T ss_pred CCcHHHHHHHHh
Confidence 589999999886
No 422
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=61.76 E-value=7.1 Score=30.51 Aligned_cols=79 Identities=20% Similarity=0.197 Sum_probs=43.3
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcc---cCCcceeccccce--ee-ecccccccccccchHHHHHHHHHHHHHhcCCCeEE
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYV---PASLAEFRLADHI--YT-RIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLI 74 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~v---pa~~~~~~~~d~I--~~-~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vv 74 (223)
++||||++=-++....+. |..| .++.+++.-++++ |. .++.+=-.....++-.+.+.+.++.++ .++.-+|
T Consensus 11 GvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~-~~~~D~v 87 (196)
T PF00448_consen 11 GVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR-KKGYDLV 87 (196)
T ss_dssp TSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH-HTTSSEE
T ss_pred CCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh-hcCCCEE
Confidence 589999998887665443 4333 4677777777666 22 222221111112233444555666654 3446788
Q ss_pred EEcCCCCC
Q psy7339 75 LVDELCRA 82 (223)
Q Consensus 75 vl~~~g~~ 82 (223)
++|-.|+.
T Consensus 88 lIDT~Gr~ 95 (196)
T PF00448_consen 88 LIDTAGRS 95 (196)
T ss_dssp EEEE-SSS
T ss_pred EEecCCcc
Confidence 89887764
No 423
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=61.64 E-value=4.6 Score=33.46 Aligned_cols=12 Identities=42% Similarity=0.526 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 43 GaGKSTLl~~l~ 54 (287)
T PRK13637 43 GSGKSTLIQHLN 54 (287)
T ss_pred CCcHHHHHHHHh
Confidence 589999999885
No 424
>PRK05480 uridine/cytidine kinase; Provisional
Probab=61.46 E-value=4.9 Score=31.39 Aligned_cols=15 Identities=20% Similarity=0.045 Sum_probs=12.4
Q ss_pred CCchhHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQ 15 (223)
Q Consensus 1 ~~gks~~~~~i~~~~ 15 (223)
+|||||+++.+.-..
T Consensus 16 GsGKTTl~~~l~~~l 30 (209)
T PRK05480 16 GSGKTTVASTIYEEL 30 (209)
T ss_pred CCCHHHHHHHHHHHh
Confidence 589999999987653
No 425
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=61.46 E-value=4.7 Score=33.23 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 43 GsGKSTLl~~l~ 54 (279)
T PRK13650 43 GSGKSTTVRLID 54 (279)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 426
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=61.45 E-value=4.6 Score=34.86 Aligned_cols=12 Identities=33% Similarity=0.517 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 39 GsGKSTLL~~ia 50 (369)
T PRK11000 39 GCGKSTLLRMIA 50 (369)
T ss_pred CCcHHHHHHHHh
Confidence 589999999885
No 427
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=61.28 E-value=4.8 Score=34.16 Aligned_cols=13 Identities=38% Similarity=0.340 Sum_probs=11.0
Q ss_pred CCchhHHHHHHHH
Q psy7339 1 MSGKSVYIKQVAL 13 (223)
Q Consensus 1 ~~gks~~~~~i~~ 13 (223)
+|||||++|.|.-
T Consensus 43 GsGKSTLl~~i~G 55 (330)
T PRK15093 43 GSGKSLIAKAICG 55 (330)
T ss_pred CCCHHHHHHHHHc
Confidence 5899999999763
No 428
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=61.27 E-value=18 Score=31.04 Aligned_cols=18 Identities=11% Similarity=0.200 Sum_probs=14.6
Q ss_pred CCchhHHHHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQIMA 18 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~ 18 (223)
++|||+|+-+++....+.
T Consensus 133 g~GKT~l~~~l~~~~~~~ 150 (342)
T PLN03186 133 RTGKTQLCHTLCVTCQLP 150 (342)
T ss_pred CCCccHHHHHHHHHhhcc
Confidence 479999999998876653
No 429
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=61.27 E-value=4.7 Score=34.43 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 41 GsGKSTLlk~L~ 52 (343)
T PRK11153 41 GAGKSTLIRCIN 52 (343)
T ss_pred CCcHHHHHHHHh
Confidence 589999999876
No 430
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=61.25 E-value=4.6 Score=33.45 Aligned_cols=12 Identities=33% Similarity=0.492 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 42 GsGKSTLl~~l~ 53 (288)
T PRK13643 42 GSGKSTLLQHLN 53 (288)
T ss_pred CChHHHHHHHHh
Confidence 589999999885
No 431
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=61.24 E-value=5.1 Score=33.82 Aligned_cols=13 Identities=54% Similarity=0.774 Sum_probs=11.6
Q ss_pred CchhHHHHHHHHH
Q psy7339 2 SGKSVYIKQVALL 14 (223)
Q Consensus 2 ~gks~~~~~i~~~ 14 (223)
|||||++|++-++
T Consensus 11 SGKSTi~KQmril 23 (317)
T cd00066 11 SGKSTILKQMKIL 23 (317)
T ss_pred ccHHHHHHHHHHh
Confidence 8999999998765
No 432
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=61.21 E-value=4.8 Score=32.61 Aligned_cols=12 Identities=33% Similarity=0.603 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 41 GsGKSTLl~~i~ 52 (257)
T PRK10619 41 GSGKSTFLRCIN 52 (257)
T ss_pred CCCHHHHHHHHh
Confidence 589999999876
No 433
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=61.20 E-value=4.8 Score=33.12 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|.
T Consensus 57 GsGKSTLl~~l~ 68 (276)
T PRK14271 57 GSGKTTFLRTLN 68 (276)
T ss_pred CCCHHHHHHHHh
Confidence 589999999984
No 434
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=61.18 E-value=4.7 Score=33.04 Aligned_cols=12 Identities=33% Similarity=0.318 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 60 GsGKSTLlk~L~ 71 (264)
T PRK13546 60 GSGKSTLSNIIG 71 (264)
T ss_pred CCCHHHHHHHHh
Confidence 589999999886
No 435
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=61.11 E-value=4.7 Score=32.99 Aligned_cols=12 Identities=25% Similarity=0.301 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 48 GsGKSTLl~~l~ 59 (268)
T PRK10419 48 GCGKSTLARLLV 59 (268)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 436
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=61.10 E-value=6 Score=31.54 Aligned_cols=15 Identities=27% Similarity=0.233 Sum_probs=11.8
Q ss_pred CCchhHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQ 15 (223)
Q Consensus 1 ~~gks~~~~~i~~~~ 15 (223)
+||||||++.+.-..
T Consensus 43 GsGKTTl~~~L~~~l 57 (229)
T PRK09270 43 GAGKSTLAEFLEALL 57 (229)
T ss_pred CCCHHHHHHHHHHHh
Confidence 589999999876443
No 437
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=61.07 E-value=4.9 Score=31.99 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 36 GsGKSTLl~~l~ 47 (232)
T cd03300 36 GCGKTTLLRLIA 47 (232)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 438
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=61.02 E-value=4.9 Score=32.70 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=10.9
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 43 GsGKSTLl~~l~ 54 (261)
T PRK14258 43 GCGKSTFLKCLN 54 (261)
T ss_pred CCCHHHHHHHHh
Confidence 589999999987
No 439
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=60.75 E-value=4.9 Score=34.50 Aligned_cols=12 Identities=33% Similarity=0.531 Sum_probs=10.8
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 38 GsGKSTLLr~Ia 49 (353)
T PRK10851 38 GSGKTTLLRIIA 49 (353)
T ss_pred CCCHHHHHHHHh
Confidence 589999999986
No 440
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=60.68 E-value=4.9 Score=33.84 Aligned_cols=12 Identities=33% Similarity=0.520 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
+|||||+||.|+
T Consensus 38 GaGKsTlLRiIA 49 (345)
T COG1118 38 GAGKSTLLRIIA 49 (345)
T ss_pred CCcHHHHHHHHh
Confidence 589999999885
No 441
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=60.57 E-value=5 Score=33.02 Aligned_cols=12 Identities=25% Similarity=0.398 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 40 GsGKSTLl~~l~ 51 (277)
T PRK13652 40 GAGKSTLFRHFN 51 (277)
T ss_pred CCCHHHHHHHHh
Confidence 589999999886
No 442
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=60.52 E-value=4.4 Score=32.71 Aligned_cols=12 Identities=33% Similarity=0.487 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
+|||||++|.++
T Consensus 32 GsGKSTLl~~l~ 43 (248)
T PRK03695 32 GAGKSTLLARMA 43 (248)
T ss_pred CCCHHHHHHHHc
Confidence 589999999875
No 443
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=60.48 E-value=5.3 Score=30.07 Aligned_cols=15 Identities=40% Similarity=0.255 Sum_probs=12.1
Q ss_pred CCchhHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQ 15 (223)
Q Consensus 1 ~~gks~~~~~i~~~~ 15 (223)
++||||+++.++-..
T Consensus 5 GsGKSTla~~la~~l 19 (163)
T PRK11545 5 GSGKSAVASEVAHQL 19 (163)
T ss_pred CCcHHHHHHHHHHHh
Confidence 589999999886554
No 444
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=60.30 E-value=5.1 Score=32.64 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 52 GsGKSTLl~~l~ 63 (265)
T PRK14252 52 GCGKSTFLRCFN 63 (265)
T ss_pred CCCHHHHHHHHh
Confidence 589999999975
No 445
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=60.27 E-value=5.2 Score=32.64 Aligned_cols=12 Identities=25% Similarity=0.301 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 46 GsGKSTLl~~l~ 57 (264)
T PRK14243 46 GCGKSTILRCFN 57 (264)
T ss_pred CCCHHHHHHHHH
Confidence 589999999876
No 446
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=60.13 E-value=5.2 Score=32.19 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 39 GsGKSTLl~~l~ 50 (250)
T PRK14266 39 GCGKSTFIRTLN 50 (250)
T ss_pred CCCHHHHHHHHH
Confidence 589999999986
No 447
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=60.02 E-value=5.1 Score=33.26 Aligned_cols=12 Identities=33% Similarity=0.492 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 43 GsGKSTLl~~l~ 54 (290)
T PRK13634 43 GSGKSTLLQHLN 54 (290)
T ss_pred CCcHHHHHHHHh
Confidence 589999999886
No 448
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=60.01 E-value=5.1 Score=34.33 Aligned_cols=12 Identities=42% Similarity=0.573 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 33 GsGKSTLl~~ia 44 (354)
T TIGR02142 33 GSGKTTLIRLIA 44 (354)
T ss_pred CCCHHHHHHHHh
Confidence 589999999885
No 449
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=59.99 E-value=4.7 Score=32.93 Aligned_cols=114 Identities=19% Similarity=0.234 Sum_probs=52.5
Q ss_pred CCchhHHHHHHHHHHHHHhh--C-----CcccCC-cceeccccceeeecccc-ccc-cc-------ccchHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQIMAQV--G-----CYVPAS-LAEFRLADHIYTRIGFN-DSI-EC-------NASTFALEMKEIAH 63 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~--g-----~~vpa~-~~~~~~~d~I~~~~~~~-~~~-~~-------~~s~~~~el~~~~~ 63 (223)
.+|||.++-++++...+..- | +|+-.+ .|....+..|..+...+ ++. +. ...++..-+.++..
T Consensus 48 gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~~L~~l~~ 127 (256)
T PF08423_consen 48 GSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLELLEQLPK 127 (256)
T ss_dssp TSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHHHHHHHHh
Confidence 48999999999888766531 2 333333 23333333332221111 111 10 11222222333333
Q ss_pred HHHhcCCCeEEEEcCCCCCcCC---C-CCCCcchhhhhHHHHhHHHHhhhhh-cccceee
Q psy7339 64 IIQFLTPRSLILVDELCRAGIE---P-PPSCLPGERLDHYARTTEQVKNRVL-LNHPVFV 118 (223)
Q Consensus 64 ~l~~~~~~~vvvl~~~g~~F~a---G-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ia 118 (223)
.+. ++.+++||+|+...-|.. | ++. .+....+.+....+..... +..+|+.
T Consensus 128 ~l~-~~~ikLIVIDSIaalfr~e~~~~~~~---~~R~~~L~~~~~~L~~lA~~~~iaVvv 183 (256)
T PF08423_consen 128 LLS-ESKIKLIVIDSIAALFRSEFSGRGDL---AERQRMLARLARILKRLARKYNIAVVV 183 (256)
T ss_dssp HHH-HSCEEEEEEETSSHHHHHHSGSTTTH---HHHHHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred hcc-ccceEEEEecchHHHHHHHHccchhh---HHHHHHHHHHHHHHHHHHHhCCceEEe
Confidence 333 457999999998755532 1 222 1222333333333433222 6777776
No 450
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=59.97 E-value=5.1 Score=33.15 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 75 GsGKSTLl~~L~ 86 (286)
T PRK14275 75 GCGKSTFLRAIN 86 (286)
T ss_pred CCCHHHHHHHHh
Confidence 589999999985
No 451
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=59.89 E-value=5.4 Score=31.91 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=11.8
Q ss_pred CCchhHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALL 14 (223)
Q Consensus 1 ~~gks~~~~~i~~~ 14 (223)
++||||+++.|...
T Consensus 33 GsGKStll~ai~~~ 46 (243)
T cd03272 33 GSGKSNFFAAIRFV 46 (243)
T ss_pred CCCHHHHHHHHHHH
Confidence 58999999999743
No 452
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=59.80 E-value=6.3 Score=30.88 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=12.1
Q ss_pred CCchhHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQ 15 (223)
Q Consensus 1 ~~gks~~~~~i~~~~ 15 (223)
++||||+++.|....
T Consensus 32 GsGKTTLl~ai~~~l 46 (204)
T cd03240 32 GAGKTTIIEALKYAL 46 (204)
T ss_pred CCCHHHHHHHHHHHH
Confidence 589999999886653
No 453
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=59.73 E-value=5.2 Score=34.31 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 42 GsGKSTLLr~Ia 53 (351)
T PRK11432 42 GCGKTTVLRLVA 53 (351)
T ss_pred CCcHHHHHHHHH
Confidence 589999999984
No 454
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=59.51 E-value=7.6 Score=34.23 Aligned_cols=37 Identities=8% Similarity=0.077 Sum_probs=25.2
Q ss_pred CCchhHHHHHHHHHHHHHh---hCCcccCCcceeccccce
Q psy7339 1 MSGKSVYIKQVALLQIMAQ---VGCYVPASLAEFRLADHI 37 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~---~g~~vpa~~~~~~~~d~I 37 (223)
++||||+++-++-..++.+ .+..+.++.+++..++.+
T Consensus 201 G~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL 240 (420)
T PRK14721 201 GVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQL 240 (420)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHH
Confidence 5899999998887554433 234456777777666655
No 455
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=59.35 E-value=25 Score=28.10 Aligned_cols=11 Identities=36% Similarity=0.416 Sum_probs=9.4
Q ss_pred CCchhHHHHHH
Q psy7339 1 MSGKSVYIKQV 11 (223)
Q Consensus 1 ~~gks~~~~~i 11 (223)
++||||+++.+
T Consensus 22 G~GKtt~a~~~ 32 (220)
T TIGR01618 22 GTGKTSTIKYL 32 (220)
T ss_pred CCCHHHHHHhc
Confidence 58999999876
No 456
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=59.28 E-value=5.3 Score=34.22 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 34 GsGKSTLl~~ia 45 (352)
T PRK11144 34 GAGKTSLINAIS 45 (352)
T ss_pred CCCHHHHHHHHh
Confidence 589999999885
No 457
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=59.25 E-value=5.4 Score=32.83 Aligned_cols=12 Identities=33% Similarity=0.332 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||+++.|+
T Consensus 43 GsGKSTLl~~l~ 54 (277)
T PRK13642 43 GSGKSTTARLID 54 (277)
T ss_pred CCcHHHHHHHHh
Confidence 589999999886
No 458
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=59.20 E-value=5.7 Score=28.36 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=10.7
Q ss_pred CCchhHHHHHHHH
Q psy7339 1 MSGKSVYIKQVAL 13 (223)
Q Consensus 1 ~~gks~~~~~i~~ 13 (223)
.+||||+++++.-
T Consensus 6 gsGKstl~~~l~~ 18 (163)
T cd00880 6 NAGKSSLLNALLG 18 (163)
T ss_pred CCCHHHHHHHHhC
Confidence 4899999998753
No 459
>PRK09087 hypothetical protein; Validated
Probab=59.15 E-value=13 Score=29.76 Aligned_cols=68 Identities=10% Similarity=-0.088 Sum_probs=32.4
Q ss_pred CCchhHHHHHHHHHHHHHhhC-CcccCCcceeccccce---eeecccccccccccchHHHHHHHHHHHHHhcCCCeEEEE
Q psy7339 1 MSGKSVYIKQVALLQIMAQVG-CYVPASLAEFRLADHI---YTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILV 76 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g-~~vpa~~~~~~~~d~I---~~~~~~~~~~~~~~s~~~~el~~~~~~l~~~~~~~vvvl 76 (223)
++|||++++.++.. .+ .|++.+.+.-.....+ ...+.+=+... .--.++-++++.+.+.. +.+|+
T Consensus 54 GsGKThLl~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~----~~~~~lf~l~n~~~~~g--~~ili 122 (226)
T PRK09087 54 GSGKTHLASIWREK-----SDALLIHPNEIGSDAANAAAEGPVLIEDIDAGG----FDETGLFHLINSVRQAG--TSLLM 122 (226)
T ss_pred CCCHHHHHHHHHHh-----cCCEEecHHHcchHHHHhhhcCeEEEECCCCCC----CCHHHHHHHHHHHHhCC--CeEEE
Confidence 58999999965532 22 3666643332222211 11111111111 11355667777666443 44566
Q ss_pred cCC
Q psy7339 77 DEL 79 (223)
Q Consensus 77 ~~~ 79 (223)
++.
T Consensus 123 ts~ 125 (226)
T PRK09087 123 TSR 125 (226)
T ss_pred ECC
Confidence 543
No 460
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=58.92 E-value=7 Score=30.46 Aligned_cols=14 Identities=36% Similarity=0.375 Sum_probs=11.5
Q ss_pred CCchhHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALL 14 (223)
Q Consensus 1 ~~gks~~~~~i~~~ 14 (223)
++||||+++.+...
T Consensus 32 GsGKStll~al~~l 45 (197)
T cd03278 32 GSGKSNIIDAIRWV 45 (197)
T ss_pred CCCHHHHHHHHHHH
Confidence 58999999999533
No 461
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=58.63 E-value=5.6 Score=33.36 Aligned_cols=12 Identities=33% Similarity=0.639 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 43 GsGKSTLl~~L~ 54 (305)
T PRK13651 43 GSGKTTFIEHLN 54 (305)
T ss_pred CCcHHHHHHHHh
Confidence 589999999886
No 462
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.59 E-value=16 Score=32.89 Aligned_cols=17 Identities=18% Similarity=0.016 Sum_probs=13.0
Q ss_pred CCchhHHHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQIM 17 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l 17 (223)
+.||||+++.++-....
T Consensus 50 GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 50 GVGKTTIARILAKRLNC 66 (484)
T ss_pred CCCHHHHHHHHHHhcCc
Confidence 46999999988765543
No 463
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=58.52 E-value=5.6 Score=34.50 Aligned_cols=12 Identities=33% Similarity=0.481 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 55 GsGKSTLLr~Ia 66 (377)
T PRK11607 55 GCGKSTLLRMLA 66 (377)
T ss_pred CCcHHHHHHHHh
Confidence 589999999886
No 464
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=58.39 E-value=6.1 Score=29.99 Aligned_cols=13 Identities=23% Similarity=0.238 Sum_probs=11.3
Q ss_pred CCchhHHHHHHHH
Q psy7339 1 MSGKSVYIKQVAL 13 (223)
Q Consensus 1 ~~gks~~~~~i~~ 13 (223)
+|||||+++.+.-
T Consensus 13 GsGKsTl~~~l~~ 25 (188)
T TIGR01360 13 GSGKGTQCEKIVE 25 (188)
T ss_pred CCCHHHHHHHHHH
Confidence 5899999999874
No 465
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=58.37 E-value=5.6 Score=32.32 Aligned_cols=12 Identities=42% Similarity=0.465 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 46 GsGKSTLl~~ia 57 (257)
T PRK14246 46 GSGKSTLLKVLN 57 (257)
T ss_pred CCCHHHHHHHHh
Confidence 589999999876
No 466
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=58.36 E-value=5.8 Score=30.71 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=14.7
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCc
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASL 28 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~ 28 (223)
++||||++|+. -|.|.|.+.
T Consensus 47 G~GKStllr~L--------YaNY~~d~G 66 (235)
T COG4778 47 GSGKSTLLRSL--------YANYLPDEG 66 (235)
T ss_pred CCcHHHHHHHH--------HhccCCCCc
Confidence 58999999985 355667653
No 467
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=58.15 E-value=6.2 Score=30.19 Aligned_cols=14 Identities=43% Similarity=0.411 Sum_probs=11.8
Q ss_pred CCchhHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALL 14 (223)
Q Consensus 1 ~~gks~~~~~i~~~ 14 (223)
++||||+++.++-.
T Consensus 13 GsGKSTl~~~la~~ 26 (176)
T PRK09825 13 GSGKSLIGSKIAAL 26 (176)
T ss_pred CCCHHHHHHHHHHh
Confidence 58999999988764
No 468
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=58.10 E-value=5.7 Score=32.72 Aligned_cols=12 Identities=42% Similarity=0.415 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 46 GsGKSTLl~~l~ 57 (280)
T PRK13633 46 GSGKSTIAKHMN 57 (280)
T ss_pred CCCHHHHHHHHh
Confidence 589999999886
No 469
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=58.09 E-value=5.8 Score=32.76 Aligned_cols=13 Identities=23% Similarity=0.255 Sum_probs=10.9
Q ss_pred CCchhHHHHHHHH
Q psy7339 1 MSGKSVYIKQVAL 13 (223)
Q Consensus 1 ~~gks~~~~~i~~ 13 (223)
++||||++|.|+=
T Consensus 42 GaGKSTLl~~i~G 54 (283)
T PRK13636 42 GAGKSTLFQNLNG 54 (283)
T ss_pred CCCHHHHHHHHhc
Confidence 5899999998853
No 470
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=58.07 E-value=8.3 Score=29.30 Aligned_cols=16 Identities=25% Similarity=0.189 Sum_probs=12.8
Q ss_pred CCchhHHHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALLQI 16 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~ 16 (223)
.+||||++.+|..++.
T Consensus 29 g~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 29 GSGKSTILEAIRYALG 44 (202)
T ss_dssp TSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc
Confidence 4899999999866653
No 471
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=57.89 E-value=5.8 Score=32.59 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 41 GsGKSTLl~~l~ 52 (274)
T PRK13647 41 GAGKSTLLLHLN 52 (274)
T ss_pred CCcHHHHHHHHh
Confidence 589999999886
No 472
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=57.82 E-value=5.9 Score=34.16 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 41 GsGKSTLLr~ia 52 (362)
T TIGR03258 41 GCGKTTLLRAIA 52 (362)
T ss_pred CCCHHHHHHHHh
Confidence 589999999985
No 473
>PTZ00301 uridine kinase; Provisional
Probab=57.77 E-value=6.2 Score=31.24 Aligned_cols=14 Identities=29% Similarity=0.169 Sum_probs=11.5
Q ss_pred CCchhHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALL 14 (223)
Q Consensus 1 ~~gks~~~~~i~~~ 14 (223)
.||||||.+.+...
T Consensus 13 gSGKTTla~~l~~~ 26 (210)
T PTZ00301 13 GSGKSSLSTNIVSE 26 (210)
T ss_pred cCCHHHHHHHHHHH
Confidence 58999999988644
No 474
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=57.72 E-value=5.6 Score=34.82 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=10.8
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|++.
T Consensus 39 GaGKSTLLk~La 50 (402)
T PRK09536 39 GAGKTTLLRAIN 50 (402)
T ss_pred CchHHHHHHHHh
Confidence 589999999986
No 475
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=57.62 E-value=5.9 Score=33.87 Aligned_cols=12 Identities=42% Similarity=0.473 Sum_probs=10.8
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|.
T Consensus 41 GaGKSTLlr~I~ 52 (343)
T TIGR02314 41 GAGKSTLIRCVN 52 (343)
T ss_pred CCCHHHHHHHHh
Confidence 589999999986
No 476
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=57.59 E-value=6.2 Score=30.26 Aligned_cols=11 Identities=27% Similarity=0.365 Sum_probs=10.0
Q ss_pred CCchhHHHHHH
Q psy7339 1 MSGKSVYIKQV 11 (223)
Q Consensus 1 ~~gks~~~~~i 11 (223)
++||||++|.+
T Consensus 12 GsGKsTl~~~l 22 (186)
T PRK10078 12 GSGKDSLLAAL 22 (186)
T ss_pred CCCHHHHHHHH
Confidence 58999999988
No 477
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=57.59 E-value=6 Score=32.74 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 75 GsGKSTLl~~l~ 86 (285)
T PRK14254 75 GCGKSTFLRCIN 86 (285)
T ss_pred CCCHHHHHHHHh
Confidence 589999999886
No 478
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=57.56 E-value=12 Score=31.16 Aligned_cols=72 Identities=14% Similarity=0.199 Sum_probs=37.4
Q ss_pred CCchhHHHHHHHHHHHHHhhCCcccCCcceeccccceeeecccc---ccccc----ccchHHHHHHHHHHHHHhcC-CCe
Q psy7339 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFN---DSIEC----NASTFALEMKEIAHIIQFLT-PRS 72 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g~~vpa~~~~~~~~d~I~~~~~~~---~~~~~----~~s~~~~el~~~~~~l~~~~-~~~ 72 (223)
+|||||+++.+. +.|.++- +.....+++.+....... +.+.- -+..+..++.+.+..+.+.. ...
T Consensus 16 GsGKtt~~~~l~------~~g~~~~-d~~~~~L~~~l~~~~~~~~~~~~~av~iD~r~~~~~~~~~~~~~~L~~~g~~~~ 88 (288)
T PRK05416 16 GAGKSVALRALE------DLGYYCV-DNLPPSLLPKLVELLAQSGGIRKVAVVIDVRSRPFFDDLPEALDELRERGIDVR 88 (288)
T ss_pred CCcHHHHHHHHH------HcCCeEE-CCcCHHHHHHHHHHHHhcCCCCCeEEEEccCchhhHHHHHHHHHHHHHcCCcEE
Confidence 589999999883 6676653 333333333332211111 11111 12235667778888887763 234
Q ss_pred EEEEcCC
Q psy7339 73 LILVDEL 79 (223)
Q Consensus 73 vvvl~~~ 79 (223)
+|-++..
T Consensus 89 iI~L~a~ 95 (288)
T PRK05416 89 VLFLDAS 95 (288)
T ss_pred EEEEECC
Confidence 5656543
No 479
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=57.56 E-value=7.6 Score=34.87 Aligned_cols=37 Identities=11% Similarity=0.093 Sum_probs=25.1
Q ss_pred CCchhHHHHHHHHHHHHHhhC---CcccCCcceeccccce
Q psy7339 1 MSGKSVYIKQVALLQIMAQVG---CYVPASLAEFRLADHI 37 (223)
Q Consensus 1 ~~gks~~~~~i~~~~~l~~~g---~~vpa~~~~~~~~d~I 37 (223)
++||||++.-++-...+.+-+ ..++++..++...+.+
T Consensus 266 GvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQL 305 (484)
T PRK06995 266 GVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQL 305 (484)
T ss_pred CccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHH
Confidence 589999999999766554322 2567777666655555
No 480
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=57.54 E-value=6.1 Score=32.19 Aligned_cols=12 Identities=25% Similarity=0.409 Sum_probs=10.2
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 44 GsGKSTLl~~l~ 55 (261)
T PRK14263 44 GCGKSTVLRSLN 55 (261)
T ss_pred CCCHHHHHHHHH
Confidence 589999999873
No 481
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=57.44 E-value=6 Score=32.61 Aligned_cols=12 Identities=42% Similarity=0.362 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 43 GaGKSTLl~~i~ 54 (279)
T PRK13635 43 GSGKSTLAKLLN 54 (279)
T ss_pred CCcHHHHHHHHh
Confidence 589999999876
No 482
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=57.24 E-value=7.3 Score=33.80 Aligned_cols=13 Identities=54% Similarity=0.769 Sum_probs=11.3
Q ss_pred CchhHHHHHHHHH
Q psy7339 2 SGKSVYIKQVALL 14 (223)
Q Consensus 2 ~gks~~~~~i~~~ 14 (223)
|||||++|++=++
T Consensus 69 SGKSTi~KQ~ril 81 (389)
T PF00503_consen 69 SGKSTILKQMRIL 81 (389)
T ss_dssp SSHHHHHHHHHHH
T ss_pred cchhhHHHHHHHH
Confidence 8999999998655
No 483
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=57.22 E-value=6.5 Score=32.08 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=10.2
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
+|||||+++++.
T Consensus 137 GSGKTT~l~all 148 (270)
T PF00437_consen 137 GSGKTTLLNALL 148 (270)
T ss_dssp TSSHHHHHHHHH
T ss_pred ccccchHHHHHh
Confidence 589999998873
No 484
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=57.16 E-value=6 Score=31.70 Aligned_cols=11 Identities=36% Similarity=0.522 Sum_probs=9.3
Q ss_pred CCchhHHHHHH
Q psy7339 1 MSGKSVYIKQV 11 (223)
Q Consensus 1 ~~gks~~~~~i 11 (223)
++||||++|.+
T Consensus 37 GAGKSTlLk~L 47 (259)
T COG4559 37 GAGKSTLLKAL 47 (259)
T ss_pred CccHHHHHHHh
Confidence 47999999965
No 485
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=57.12 E-value=6.2 Score=32.71 Aligned_cols=12 Identities=25% Similarity=0.299 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 73 GsGKSTLl~~I~ 84 (282)
T cd03291 73 GSGKTSLLMLIL 84 (282)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 486
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=56.99 E-value=6.2 Score=33.00 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=10.7
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 81 GsGKSTLl~~L~ 92 (305)
T PRK14264 81 GCGKSTFLRCLN 92 (305)
T ss_pred CCCHHHHHHHHh
Confidence 589999999986
No 487
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=56.92 E-value=6.2 Score=33.51 Aligned_cols=12 Identities=25% Similarity=0.492 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
+|||||++|.|.
T Consensus 57 GsGKSTLlk~i~ 68 (331)
T PRK15079 57 GCGKSTFARAII 68 (331)
T ss_pred CCCHHHHHHHHH
Confidence 589999999875
No 488
>PRK06217 hypothetical protein; Validated
Probab=56.91 E-value=6.6 Score=30.02 Aligned_cols=14 Identities=21% Similarity=0.026 Sum_probs=11.9
Q ss_pred CCchhHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALL 14 (223)
Q Consensus 1 ~~gks~~~~~i~~~ 14 (223)
+|||||+.+.++-.
T Consensus 11 GsGKSTla~~L~~~ 24 (183)
T PRK06217 11 GSGTTTLGAALAER 24 (183)
T ss_pred CCCHHHHHHHHHHH
Confidence 58999999998854
No 489
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=56.80 E-value=5.9 Score=31.96 Aligned_cols=12 Identities=42% Similarity=0.462 Sum_probs=9.9
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
+|||||++|.+.
T Consensus 40 GsGKSTL~~~l~ 51 (235)
T COG1122 40 GSGKSTLLKLLN 51 (235)
T ss_pred CCCHHHHHHHHc
Confidence 589999998754
No 490
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=56.80 E-value=29 Score=31.30 Aligned_cols=9 Identities=33% Similarity=0.327 Sum_probs=8.4
Q ss_pred CCchhHHHH
Q psy7339 1 MSGKSVYIK 9 (223)
Q Consensus 1 ~~gks~~~~ 9 (223)
+|||||+||
T Consensus 42 GsGKSTLLr 50 (504)
T TIGR03238 42 GDGKSEILA 50 (504)
T ss_pred CCCHHHHHh
Confidence 589999999
No 491
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=56.72 E-value=6.4 Score=33.61 Aligned_cols=12 Identities=25% Similarity=0.326 Sum_probs=10.6
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 77 GaGKSTLl~~L~ 88 (340)
T PRK13536 77 GAGKSTIARMIL 88 (340)
T ss_pred CCCHHHHHHHHH
Confidence 589999999875
No 492
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=56.63 E-value=6.4 Score=32.23 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 61 GsGKSTLl~~la 72 (272)
T PRK14236 61 GCGKSTLLRCFN 72 (272)
T ss_pred CCCHHHHHHHHH
Confidence 589999999875
No 493
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=56.53 E-value=6.5 Score=31.88 Aligned_cols=12 Identities=33% Similarity=0.097 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 57 GsGKSTLl~~l~ 68 (257)
T cd03288 57 GSGKSSLSLAFF 68 (257)
T ss_pred CCCHHHHHHHHH
Confidence 589999999875
No 494
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=56.51 E-value=6.2 Score=33.42 Aligned_cols=13 Identities=38% Similarity=0.158 Sum_probs=10.8
Q ss_pred CCchhHHHHHHHH
Q psy7339 1 MSGKSVYIKQVAL 13 (223)
Q Consensus 1 ~~gks~~~~~i~~ 13 (223)
+|||||++|.|.=
T Consensus 43 GsGKSTL~~~l~G 55 (326)
T PRK11022 43 GSGKSVSSLAIMG 55 (326)
T ss_pred CChHHHHHHHHHc
Confidence 5899999998753
No 495
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=56.46 E-value=6.5 Score=32.96 Aligned_cols=12 Identities=17% Similarity=0.337 Sum_probs=10.5
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.+.
T Consensus 43 GaGKSTLl~~l~ 54 (306)
T PRK13537 43 GAGKTTTLRMLL 54 (306)
T ss_pred CCCHHHHHHHHh
Confidence 589999999875
No 496
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=56.01 E-value=6.8 Score=28.49 Aligned_cols=13 Identities=31% Similarity=0.304 Sum_probs=11.1
Q ss_pred CCchhHHHHHHHH
Q psy7339 1 MSGKSVYIKQVAL 13 (223)
Q Consensus 1 ~~gks~~~~~i~~ 13 (223)
++||||+++++.-
T Consensus 9 g~GKTtL~~~l~~ 21 (170)
T cd01876 9 NVGKSSLINALTN 21 (170)
T ss_pred CCCHHHHHHHHhc
Confidence 4899999998874
No 497
>COG4639 Predicted kinase [General function prediction only]
Probab=56.00 E-value=6.1 Score=29.87 Aligned_cols=10 Identities=50% Similarity=0.664 Sum_probs=9.0
Q ss_pred CCchhHHHHH
Q psy7339 1 MSGKSVYIKQ 10 (223)
Q Consensus 1 ~~gks~~~~~ 10 (223)
.||||||+|.
T Consensus 12 ~sGKsT~ak~ 21 (168)
T COG4639 12 GSGKSTFAKE 21 (168)
T ss_pred CCchhHHHHH
Confidence 4899999998
No 498
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=55.79 E-value=7.1 Score=29.54 Aligned_cols=14 Identities=14% Similarity=0.135 Sum_probs=11.2
Q ss_pred CCchhHHHHHHHHH
Q psy7339 1 MSGKSVYIKQVALL 14 (223)
Q Consensus 1 ~~gks~~~~~i~~~ 14 (223)
+|||||+++.++..
T Consensus 11 GsGKttl~~~l~~~ 24 (179)
T TIGR02322 11 GAGKDTLLDYARAR 24 (179)
T ss_pred CCCHHHHHHHHHHH
Confidence 58999999976544
No 499
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=55.47 E-value=6.8 Score=33.09 Aligned_cols=12 Identities=33% Similarity=0.415 Sum_probs=10.4
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.++
T Consensus 62 GsGKSTLl~~L~ 73 (320)
T PRK13631 62 GSGKSTLVTHFN 73 (320)
T ss_pred CCCHHHHHHHHh
Confidence 589999999874
No 500
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=55.47 E-value=7.2 Score=30.52 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=10.1
Q ss_pred CCchhHHHHHHH
Q psy7339 1 MSGKSVYIKQVA 12 (223)
Q Consensus 1 ~~gks~~~~~i~ 12 (223)
++||||++|.|+
T Consensus 38 G~GKTtLLRila 49 (209)
T COG4133 38 GAGKTTLLRILA 49 (209)
T ss_pred CCcHHHHHHHHH
Confidence 589999999864
Done!