Your job contains 1 sequence.
>psy7339
MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE
IAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFVLQ
ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE
IERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGHATTQTTRV
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy7339
(223 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1P4E2 - symbol:MSH4 "Uncharacterized protein" ... 260 3.1e-21 1
UNIPROTKB|I3L5Z8 - symbol:MSH4 "Uncharacterized protein" ... 247 8.4e-20 1
UNIPROTKB|F1P6X2 - symbol:MSH4 "Uncharacterized protein" ... 246 8.8e-20 1
UNIPROTKB|F1S9R2 - symbol:MSH4 "Uncharacterized protein" ... 247 8.9e-20 1
UNIPROTKB|E1BK76 - symbol:MSH4 "Uncharacterized protein" ... 246 9.9e-20 1
UNIPROTKB|E2RJA9 - symbol:MSH4 "Uncharacterized protein" ... 246 1.1e-19 1
MGI|MGI:1860077 - symbol:Msh4 "mutS homolog 4 (E. coli)" ... 246 1.2e-19 1
UNIPROTKB|O15457 - symbol:MSH4 "MutS protein homolog 4" s... 244 1.9e-19 1
TAIR|locus:2130913 - symbol:MSH4 "AT4G17380" species:3702... 238 6.2e-19 1
RGD|1309190 - symbol:Msh4 "mutS homolog 4 (E. coli)" spec... 238 8.5e-19 1
UNIPROTKB|F1RWZ4 - symbol:ECI2 "Uncharacterized protein" ... 219 1.3e-17 1
ZFIN|ZDB-GENE-040718-392 - symbol:zgc:92030 "zgc:92030" s... 215 3.6e-17 1
UNIPROTKB|Q759V4 - symbol:MSH3 "DNA mismatch repair prote... 222 4.8e-17 1
DICTYBASE|DDB_G0284747 - symbol:msh5 "mutS homolog" speci... 202 1.9e-16 2
TAIR|locus:2131829 - symbol:MSH3 "AT4G25540" species:3702... 216 2.3e-16 1
UNIPROTKB|Q7NLT8 - symbol:mutS "DNA mismatch repair prote... 213 3.6e-16 1
UNIPROTKB|E1BW06 - symbol:ECI2 "Uncharacterized protein" ... 206 3.8e-16 1
DICTYBASE|DDB_G0283957 - symbol:msh4 "mutS homolog" speci... 213 4.5e-16 1
UNIPROTKB|F1PMM1 - symbol:ECI2 "Uncharacterized protein" ... 203 6.4e-16 1
UNIPROTKB|F1PML6 - symbol:ECI2 "Uncharacterized protein" ... 203 8.0e-16 1
RGD|1563954 - symbol:Msh3 "mutS homolog 3 (E. coli)" spec... 197 9.8e-16 1
UNIPROTKB|F1MLH1 - symbol:MSH3 "Uncharacterized protein" ... 210 1.0e-15 1
UNIPROTKB|A9WFZ9 - symbol:mutS "DNA mismatch repair prote... 209 1.1e-15 1
UNIPROTKB|F1MWY9 - symbol:ECI2 "Uncharacterized protein" ... 201 1.1e-15 1
UNIPROTKB|Q8TTB4 - symbol:mutS "DNA mismatch repair prote... 205 2.6e-15 1
UNIPROTKB|Q7S0U7 - symbol:NCU07407 "Putative uncharacteri... 206 3.0e-15 1
WB|WBGene00001872 - symbol:him-14 species:6239 "Caenorhab... 204 3.0e-15 1
UNIPROTKB|Q23405 - symbol:him-14 "MutS protein homolog hi... 204 3.0e-15 1
UNIPROTKB|A4R0R0 - symbol:MSH3 "DNA mismatch repair prote... 205 3.7e-15 1
TIGR_CMR|DET_1219 - symbol:DET_1219 "DNA mismatch repair ... 203 4.0e-15 1
UNIPROTKB|Q3KKQ0 - symbol:mutS "DNA mismatch repair prote... 202 4.7e-15 1
UNIPROTKB|F1P9S9 - symbol:MSH3 "Uncharacterized protein" ... 203 5.3e-15 1
RGD|1310224 - symbol:Eci3 "enoyl-Coenzyme A delta isomera... 191 5.6e-15 1
CGD|CAL0002525 - symbol:orf19.2579 species:5476 "Candida ... 201 5.9e-15 1
UNIPROTKB|C9J000 - symbol:ECI2 "Enoyl-CoA delta isomerase... 189 6.9e-15 1
ASPGD|ASPL0000012704 - symbol:AN3749 species:162425 "Emer... 201 9.2e-15 1
UNIPROTKB|Q5B6T1 - symbol:msh3 "DNA mismatch repair prote... 201 9.2e-15 1
MGI|MGI:1346064 - symbol:Eci2 "enoyl-Coenzyme A delta iso... 192 1.3e-14 1
TIGR_CMR|SO_3431 - symbol:SO_3431 "DNA mismatch repair pr... 198 1.4e-14 1
DICTYBASE|DDB_G0268614 - symbol:msh6 "mutS homolog" speci... 200 1.4e-14 1
UNIPROTKB|F1LXQ9 - symbol:Msh3 "Protein Msh3" species:101... 186 1.4e-14 1
UNIPROTKB|E1C1F8 - symbol:MSH3 "Uncharacterized protein" ... 195 1.6e-14 1
RGD|2322311 - symbol:Msh6 "mutS homolog 6 (E. coli)" spec... 199 2.0e-14 1
RGD|1359427 - symbol:Eci2 "enoyl-CoA delta isomerase 2" s... 190 2.2e-14 1
UNIPROTKB|P61667 - symbol:mutS "DNA mismatch repair prote... 196 2.3e-14 1
TIGR_CMR|GSU_1822 - symbol:GSU_1822 "DNA mismatch repair ... 196 2.3e-14 1
UNIPROTKB|F1LQM8 - symbol:Msh3 "Protein Msh3" species:101... 197 2.5e-14 1
UNIPROTKB|O75521 - symbol:ECI2 "Enoyl-CoA delta isomerase... 189 2.8e-14 1
UNIPROTKB|O13396 - symbol:msh-2 "DNA mismatch repair prot... 195 3.2e-14 1
UNIPROTKB|P20585 - symbol:MSH3 "DNA mismatch repair prote... 196 3.3e-14 1
POMBASE|SPBC19G7.01c - symbol:msh2 "MutS protein homolog ... 195 3.4e-14 1
UNIPROTKB|P49849 - symbol:mutS "DNA mismatch repair prote... 194 3.6e-14 1
FB|FBgn0035169 - symbol:CG13890 species:7227 "Drosophila ... 182 3.8e-14 1
UNIPROTKB|Q8F496 - symbol:mutS "DNA mismatch repair prote... 192 5.9e-14 1
UNIPROTKB|Q8A334 - symbol:mutS "DNA mismatch repair prote... 192 6.0e-14 1
UNIPROTKB|A6V1G8 - symbol:mutS "DNA mismatch repair prote... 191 7.6e-14 1
UNIPROTKB|E1BYJ2 - symbol:MSH6 "Uncharacterized protein" ... 193 8.4e-14 1
UNIPROTKB|E1BWV7 - symbol:MSH6 "Uncharacterized protein" ... 193 8.6e-14 1
MGI|MGI:1343961 - symbol:Msh6 "mutS homolog 6 (E. coli)" ... 193 8.6e-14 1
UNIPROTKB|F5H2F9 - symbol:MSH6 "DNA mismatch repair prote... 191 1.0e-13 1
MGI|MGI:109519 - symbol:Msh3 "mutS homolog 3 (E. coli)" s... 191 1.1e-13 1
CGD|CAL0005874 - symbol:orf19.496 species:5476 "Candida a... 190 1.1e-13 1
TIGR_CMR|NSE_0335 - symbol:NSE_0335 "DNA mismatch repair ... 189 1.2e-13 1
CGD|CAL0006305 - symbol:MSH6 species:5476 "Candida albica... 191 1.2e-13 1
UNIPROTKB|B4DF41 - symbol:MSH6 "DNA mismatch repair prote... 191 1.2e-13 1
CGD|CAL0000288 - symbol:orf19.3608 species:5476 "Candida ... 190 1.3e-13 1
UNIPROTKB|E1B9Q4 - symbol:MSH6 "Uncharacterized protein" ... 191 1.4e-13 1
UNIPROTKB|P52701 - symbol:MSH6 "DNA mismatch repair prote... 191 1.4e-13 1
TIGR_CMR|CHY_1397 - symbol:CHY_1397 "DNA mismatch repair ... 188 1.6e-13 1
UNIPROTKB|F1PM27 - symbol:MSH6 "Uncharacterized protein" ... 190 1.6e-13 1
UNIPROTKB|J9P5H1 - symbol:MSH6 "Uncharacterized protein" ... 190 1.7e-13 1
UNIPROTKB|I3LHZ9 - symbol:LOC100739477 "Uncharacterized p... 190 1.7e-13 1
UNIPROTKB|Q7SD11 - symbol:msh-3 "DNA mismatch repair prot... 189 1.8e-13 1
SGD|S000000688 - symbol:MSH3 "Mismatch repair protein" sp... 188 2.0e-13 1
TIGR_CMR|VC_0535 - symbol:VC_0535 "DNA mismatch repair pr... 187 2.1e-13 1
SGD|S000001891 - symbol:MSH4 "Protein involved in meiotic... 187 2.1e-13 1
TIGR_CMR|BA_3905 - symbol:BA_3905 "DNA mismatch repair pr... 187 2.2e-13 1
DICTYBASE|DDB_G0275809 - symbol:msh2 "mutS homolog" speci... 186 3.0e-13 1
UNIPROTKB|Q5VR41 - symbol:OJ1174_D05.15 "Os01g0180600 pro... 187 3.3e-13 1
UNIPROTKB|H0YF11 - symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD... 173 3.4e-13 1
UNIPROTKB|Q9UFG2 - symbol:DKFZp434C1615 "Putative unchara... 173 3.4e-13 1
UNIPROTKB|E9PGY4 - symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD... 173 3.7e-13 1
UNIPROTKB|F1N8B7 - symbol:F1N8B7 "Uncharacterized protein... 184 3.8e-13 1
UNIPROTKB|F1SQH4 - symbol:LOC100739713 "Uncharacterized p... 180 3.8e-13 1
DICTYBASE|DDB_G0281683 - symbol:msh3 "mutS homolog" speci... 187 4.0e-13 1
UNIPROTKB|P74926 - symbol:mutS "DNA mismatch repair prote... 183 4.9e-13 1
UNIPROTKB|Q752H0 - symbol:AFR603C "AFR603Cp" species:2848... 184 5.0e-13 1
UNIPROTKB|Q5BDA1 - symbol:AN1479.2 "DNA-binding protein o... 183 6.1e-13 1
ZFIN|ZDB-GENE-060526-307 - symbol:msh3 "mutS homolog 3 (E... 183 6.3e-13 1
UNIPROTKB|F1SQH6 - symbol:LOC100739713 "Uncharacterized p... 180 6.3e-13 1
SGD|S000005450 - symbol:MSH2 "Protein that forms heterodi... 183 6.4e-13 1
UNIPROTKB|P23909 - symbol:mutS species:83333 "Escherichia... 182 6.9e-13 1
UNIPROTKB|F1P4E7 - symbol:CDYL "Uncharacterized protein" ... 179 7.0e-13 1
UNIPROTKB|F1NN91 - symbol:CDYL2 "Uncharacterized protein"... 178 7.9e-13 1
UNIPROTKB|F1LZV2 - symbol:F1LZV2 "Uncharacterized protein... 176 8.8e-13 1
UNIPROTKB|F1NV33 - symbol:MSH2 "Uncharacterized protein" ... 181 9.0e-13 1
UNIPROTKB|F1NFH4 - symbol:MSH2 "Uncharacterized protein" ... 181 9.1e-13 1
UNIPROTKB|E9PHA6 - symbol:MSH2 "DNA mismatch repair prote... 181 9.9e-13 1
RGD|620786 - symbol:Msh2 "mutS homolog 2 (E. coli)" speci... 181 1.0e-12 1
UNIPROTKB|F1PM37 - symbol:MSH2 "Uncharacterized protein" ... 181 1.0e-12 1
WARNING: Descriptions of 103 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|F1P4E2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983
"mismatched DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0001541 "ovarian follicle development" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0007292 "female gamete generation" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:AADN02012381 IPI:IPI00596754 Ensembl:ENSGALT00000018582
Uniprot:F1P4E2
Length = 846
Score = 260 (96.6 bits), Expect = 3.1e-21, P = 3.1e-21
Identities = 52/81 (64%), Positives = 62/81 (76%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
MSGKS YIKQ+AL QIMAQ+G YVPA FR+A+ I+TRIG +D IE NASTF EMKE
Sbjct: 596 MSGKSTYIKQIALCQIMAQIGSYVPAEYCSFRIAEQIFTRIGMDDDIETNASTFMKEMKE 655
Query: 61 IAHIIQFLTPRSLILVDELCR 81
I +IIQ +SLI++DEL R
Sbjct: 656 ITYIIQNANDKSLIIIDELGR 676
>UNIPROTKB|I3L5Z8 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110 SUPFAM:SSF48334
SUPFAM:SSF53150 EMBL:CU929611 EMBL:FP312934
Ensembl:ENSSSCT00000023892 Uniprot:I3L5Z8
Length = 902
Score = 247 (92.0 bits), Expect = 8.4e-20, P = 8.4e-20
Identities = 49/81 (60%), Positives = 62/81 (76%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
MSGKS Y+KQ+AL QIMAQ+G YVPA + FR+A+ I+TRI +D IE N+STF EMKE
Sbjct: 649 MSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKE 708
Query: 61 IAHIIQFLTPRSLILVDELCR 81
IA+I+ +SLIL+DEL R
Sbjct: 709 IAYILHNANDKSLILIDELGR 729
>UNIPROTKB|F1P6X2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:AAEX03004895 EMBL:AAEX03004896
Ensembl:ENSCAFT00000032471 Uniprot:F1P6X2
Length = 798
Score = 246 (91.7 bits), Expect = 8.8e-20, P = 8.8e-20
Identities = 49/81 (60%), Positives = 62/81 (76%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
MSGKS Y+KQ+AL QIMAQ+G YVPA + FR+A+ I+TRI +D IE N+STF EMKE
Sbjct: 545 MSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKE 604
Query: 61 IAHIIQFLTPRSLILVDELCR 81
IA+I+ +SLIL+DEL R
Sbjct: 605 IAYILHNANNKSLILIDELGR 625
>UNIPROTKB|F1S9R2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0001541 "ovarian follicle development"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:CU929611
EMBL:FP312934 Ensembl:ENSSSCT00000004176 Uniprot:F1S9R2
Length = 934
Score = 247 (92.0 bits), Expect = 8.9e-20, P = 8.9e-20
Identities = 49/81 (60%), Positives = 62/81 (76%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
MSGKS Y+KQ+AL QIMAQ+G YVPA + FR+A+ I+TRI +D IE N+STF EMKE
Sbjct: 681 MSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKE 740
Query: 61 IAHIIQFLTPRSLILVDELCR 81
IA+I+ +SLIL+DEL R
Sbjct: 741 IAYILHNANDKSLILIDELGR 761
>UNIPROTKB|E1BK76 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0001541 "ovarian follicle development"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:DAAA02008282 EMBL:DAAA02008283 EMBL:DAAA02008284
IPI:IPI00710010 Ensembl:ENSBTAT00000024552 Uniprot:E1BK76
Length = 855
Score = 246 (91.7 bits), Expect = 9.9e-20, P = 9.9e-20
Identities = 48/81 (59%), Positives = 62/81 (76%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
MSGKS Y+KQ+AL QIMAQ+G YVPA + FR+A+ I+TRI +D IE N+STF EMKE
Sbjct: 602 MSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKE 661
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+A+I+ +SLIL+DEL R
Sbjct: 662 VAYILHNANDKSLILIDELGR 682
>UNIPROTKB|E2RJA9 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:AAEX03004895 EMBL:AAEX03004896 Ensembl:ENSCAFT00000037908
Uniprot:E2RJA9
Length = 930
Score = 246 (91.7 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 49/81 (60%), Positives = 62/81 (76%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
MSGKS Y+KQ+AL QIMAQ+G YVPA + FR+A+ I+TRI +D IE N+STF EMKE
Sbjct: 677 MSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKE 736
Query: 61 IAHIIQFLTPRSLILVDELCR 81
IA+I+ +SLIL+DEL R
Sbjct: 737 IAYILHNANNKSLILIDELGR 757
>MGI|MGI:1860077 [details] [associations]
symbol:Msh4 "mutS homolog 4 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0000795
"synaptonemal complex" evidence=ISS;IDA] [GO:0001541 "ovarian
follicle development" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0007126 "meiosis" evidence=IDA;IMP] [GO:0007129 "synapsis"
evidence=IMP] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0007292 "female gamete generation" evidence=IMP] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0030983
"mismatched DNA binding" evidence=IBA] [GO:0045143 "homologous
chromosome segregation" evidence=IBA] [GO:0051026 "chiasma
assembly" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 MGI:MGI:1860077 GO:GO:0005524 GO:GO:0005654
GO:GO:0007283 GO:GO:0006298 Reactome:REACT_120463 GO:GO:0001541
GO:GO:0030983 GO:GO:0007292 GO:GO:0007131 Reactome:REACT_27235
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 GeneTree:ENSGT00550000074897 KO:K08740 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 CTD:4438
HOGENOM:HOG000290656 HOVERGEN:HBG036910 OrthoDB:EOG4DR9BS
EMBL:AF298655 EMBL:AF178957 IPI:IPI00118045 RefSeq:NP_114076.1
UniGene:Mm.272226 ProteinModelPortal:Q99MT2 SMR:Q99MT2
STRING:Q99MT2 PhosphoSite:Q99MT2 PRIDE:Q99MT2
Ensembl:ENSMUST00000005630 GeneID:55993 KEGG:mmu:55993
InParanoid:Q99MT2 ChiTaRS:MSH4 NextBio:311726 Bgee:Q99MT2
CleanEx:MM_MSH4 Genevestigator:Q99MT2 GermOnline:ENSMUSG00000005493
Uniprot:Q99MT2
Length = 958
Score = 246 (91.7 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 50/81 (61%), Positives = 61/81 (75%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
MSGKS Y+KQ+AL QIMAQ+G YVPA A FR+A I+TRI +D IE N+STF EMKE
Sbjct: 705 MSGKSTYLKQIALCQIMAQIGSYVPAEYASFRIAAQIFTRISTDDDIETNSSTFMKEMKE 764
Query: 61 IAHIIQFLTPRSLILVDELCR 81
IA+I+ +SLIL+DEL R
Sbjct: 765 IAYILHNANDKSLILIDELGR 785
>UNIPROTKB|O15457 [details] [associations]
symbol:MSH4 "MutS protein homolog 4" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0001541
"ovarian follicle development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007292 "female gamete
generation" evidence=IEA] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IRD] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0030983
"mismatched DNA binding" evidence=IBA] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0045143 "homologous chromosome
segregation" evidence=IBA] [GO:0051026 "chiasma assembly"
evidence=IBA] [GO:0003677 "DNA binding" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:CH471059 GO:GO:0007283
GO:GO:0006298 EMBL:AL357314 Reactome:REACT_111183 GO:GO:0001541
GO:GO:0030983 EMBL:AL445464 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 KO:K08740 OMA:GFFIQMT Gene3D:3.30.420.110
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:U89293 EMBL:AF104243
EMBL:AY268350 EMBL:BC033030 IPI:IPI00289914 RefSeq:NP_002431.2
UniGene:Hs.216639 ProteinModelPortal:O15457 SMR:O15457
IntAct:O15457 STRING:O15457 PhosphoSite:O15457 PRIDE:O15457
DNASU:4438 Ensembl:ENST00000263187 GeneID:4438 KEGG:hsa:4438
UCSC:uc001dhd.2 CTD:4438 GeneCards:GC01P076262 HGNC:HGNC:7327
HPA:HPA028117 MIM:602105 neXtProt:NX_O15457 PharmGKB:PA31135
HOGENOM:HOG000290656 HOVERGEN:HBG036910 InParanoid:O15457
OrthoDB:EOG4DR9BS PhylomeDB:O15457 GenomeRNAi:4438 NextBio:17297
ArrayExpress:O15457 Bgee:O15457 CleanEx:HS_MSH4
Genevestigator:O15457 GermOnline:ENSG00000057468 Uniprot:O15457
Length = 936
Score = 244 (91.0 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 49/81 (60%), Positives = 61/81 (75%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
MSGKS Y+KQ+AL QIMAQ+G YVPA + FR+A I+TRI +D IE N+STF EMKE
Sbjct: 683 MSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAKQIFTRISTDDDIETNSSTFMKEMKE 742
Query: 61 IAHIIQFLTPRSLILVDELCR 81
IA+I+ +SLIL+DEL R
Sbjct: 743 IAYILHNANDKSLILIDELGR 763
>TAIR|locus:2130913 [details] [associations]
symbol:MSH4 "AT4G17380" species:3702 "Arabidopsis
thaliana" [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200
"ATP catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000794 "condensed nuclear chromosome" evidence=IDA]
[GO:0007129 "synapsis" evidence=RCA;IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0006312 "mitotic recombination" evidence=RCA]
[GO:0007059 "chromosome segregation" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007067 "mitosis"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0010332
"response to gamma radiation" evidence=RCA] [GO:0010564 "regulation
of cell cycle process" evidence=RCA] [GO:0032204 "regulation of
telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0043247 "telomere
maintenance in response to DNA damage" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 SMART:SM00533 SMART:SM00534 GO:GO:0009506
GO:GO:0005524 EMBL:CP002687 GO:GO:0003684 EMBL:Z97343 GO:GO:0030983
GO:GO:0008094 GO:GO:0051026 EMBL:AL161546 GO:GO:0045143
GO:GO:0043073 GO:GO:0000795 GO:GO:0007128 KO:K08740 OMA:GFFIQMT
SUPFAM:SSF48334 GO:GO:0032300 EMBL:AY646927 IPI:IPI00525244
IPI:IPI00538174 PIR:B71443 RefSeq:NP_193469.2 UniGene:At.24376
UniGene:At.71316 ProteinModelPortal:F4JP48 SMR:F4JP48 IntAct:F4JP48
EnsemblPlants:AT4G17380.1 GeneID:827450 KEGG:ath:AT4G17380
TAIR:At4g17380 GO:GO:0010777 Uniprot:F4JP48
Length = 792
Score = 238 (88.8 bits), Expect = 6.2e-19, P = 6.2e-19
Identities = 47/82 (57%), Positives = 63/82 (76%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
MSGKS Y++QV L+ I+AQ+GCYVPA A R+ D I+TR+G D++E N+STF EM+E
Sbjct: 556 MSGKSTYLQQVCLVVILAQIGCYVPARFATIRVVDRIFTRMGTMDNLESNSSTFMTEMRE 615
Query: 61 IAHIIQFLTPRSLILVDELCRA 82
A I+Q +T RSLI++DEL RA
Sbjct: 616 TAFIMQNVTNRSLIVMDELGRA 637
>RGD|1309190 [details] [associations]
symbol:Msh4 "mutS homolog 4 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000793 "condensed chromosome" evidence=ISO] [GO:0000794
"condensed nuclear chromosome" evidence=ISO] [GO:0000795
"synaptonemal complex" evidence=ISO;IBA] [GO:0001541 "ovarian
follicle development" evidence=IEA;ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0007126 "meiosis" evidence=ISO] [GO:0007129
"synapsis" evidence=ISO] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0007283 "spermatogenesis"
evidence=IEA;ISO] [GO:0007292 "female gamete generation"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008150 "biological_process" evidence=ND]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0045143 "homologous
chromosome segregation" evidence=IBA] [GO:0051026 "chiasma
assembly" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 RGD:1309190 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110 SUPFAM:SSF48334
SUPFAM:SSF53150 IPI:IPI00870836 Ensembl:ENSRNOT00000014106
Uniprot:F1M9U4
Length = 958
Score = 238 (88.8 bits), Expect = 8.5e-19, P = 8.5e-19
Identities = 48/81 (59%), Positives = 61/81 (75%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
MSGKS ++KQ+AL QIMAQ+G +VPA A FR+A I+TRI +D IE N+STF EMKE
Sbjct: 705 MSGKSTFLKQIALCQIMAQIGSFVPAQYASFRIAAQIFTRISTDDDIETNSSTFMKEMKE 764
Query: 61 IAHIIQFLTPRSLILVDELCR 81
IA+I+ +SLIL+DEL R
Sbjct: 765 IAYILHNANDKSLILIDELGR 785
>UNIPROTKB|F1RWZ4 [details] [associations]
symbol:ECI2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0009062 "fatty acid catabolic process" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005102 "receptor
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0000062 "fatty-acyl-CoA binding" evidence=IEA]
InterPro:IPR000582 InterPro:IPR001753 Pfam:PF00378 Pfam:PF00887
PRINTS:PR00689 PROSITE:PS51228 GO:GO:0005739 GO:GO:0003824
Gene3D:1.20.80.10 InterPro:IPR014352 GO:GO:0000062 SUPFAM:SSF47027
GO:GO:0009062 GeneTree:ENSGT00670000097595 OMA:RWLSDEC
EMBL:CU607065 Ensembl:ENSSSCT00000001092 ArrayExpress:F1RWZ4
Uniprot:F1RWZ4
Length = 394
Score = 219 (82.2 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 41/89 (46%), Positives = 61/89 (68%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+ATFHTPF+ G +PEGCSS +FP++ G S A+E+L G+KL A+EAL G V+ VF +
Sbjct: 265 RATFHTPFSHLGQSPEGCSSYIFPKMMGPSKAAEMLIFGKKLTAREALAQGLVTAVFPDD 324
Query: 180 EIERDLWPRIHAWAKLSSCIVSLLAHLMR 208
++++W R+ A+AKL + + LMR
Sbjct: 325 TFQKEVWARLKAYAKLPPNAMRIAKRLMR 353
>ZFIN|ZDB-GENE-040718-392 [details] [associations]
symbol:zgc:92030 "zgc:92030" species:7955 "Danio
rerio" [GO:0008152 "metabolic process" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0000062 "fatty-acyl-CoA
binding" evidence=IEA] InterPro:IPR000582 InterPro:IPR001753
Pfam:PF00378 Pfam:PF00887 PRINTS:PR00689 PROSITE:PS51228
ZFIN:ZDB-GENE-040718-392 Gene3D:1.20.80.10 InterPro:IPR014352
InterPro:IPR022408 SUPFAM:SSF47027 PROSITE:PS00880
GeneTree:ENSGT00670000097595 EMBL:BX897669 EMBL:FP236475
Ensembl:ENSDART00000151966 Uniprot:K7DY20
Length = 392
Score = 215 (80.7 bits), Expect = 3.6e-17, P = 3.6e-17
Identities = 43/98 (43%), Positives = 65/98 (66%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+ATFHTPF+ G +PEGCSS LFP++ G + ASE+L +KL+A +A + G VS VF
Sbjct: 263 KATFHTPFSQLGQSPEGCSSYLFPKMMGAAKASEVLLFNKKLSATQACELGLVSEVFPES 322
Query: 180 EIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDG-HA 216
+ ++W R+ A+AKL ++L L+RG+ ++ HA
Sbjct: 323 SFQSEVWSRLKAYAKLPKNSLALSKQLIRGLEKEKLHA 360
>UNIPROTKB|Q759V4 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:284811 "Ashbya gossypii ATCC 10895" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0005737 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 EMBL:AE016817 GenomeReviews:AE016817_GR
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 HSSP:Q56215
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
RefSeq:NP_984265.1 ProteinModelPortal:Q759V4 STRING:Q759V4
EnsemblFungi:AAS52089 GeneID:4620427 KEGG:ago:AGOS_ADR168C
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M PhylomeDB:Q759V4
Uniprot:Q759V4
Length = 1032
Score = 222 (83.2 bits), Expect = 4.8e-17, P = 4.8e-17
Identities = 46/81 (56%), Positives = 59/81 (72%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+QVALL IMAQ+GCYVPA AEF + D I+TRIG D++ N STF +EM E
Sbjct: 799 MGGKSSYIRQVALLVIMAQIGCYVPAQEAEFSIFDQIFTRIGAYDNLLRNDSTFKIEMTE 858
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+ I++ T SL+L+DE+ R
Sbjct: 859 MVQILRSSTENSLLLLDEVGR 879
>DICTYBASE|DDB_G0284747 [details] [associations]
symbol:msh5 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0007131 "reciprocal
meiotic recombination" evidence=ISS;IBA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0003684 "damaged DNA
binding" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 Pfam:PF00488 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0284747
GO:GO:0005524 GenomeReviews:CM000153_GR EMBL:AAFI02000071
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 GO:GO:0008094
GO:GO:0051026 GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249
SUPFAM:SSF48334 SUPFAM:SSF53150 KO:K08741 RefSeq:XP_638383.1
EnsemblProtists:DDB0231220 GeneID:8624752 KEGG:ddi:DDB_G0284747
InParanoid:Q54P75 OMA:FAAELDC ProtClustDB:CLSZ2728934
Uniprot:Q54P75
Length = 880
Score = 202 (76.2 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 41/85 (48%), Positives = 57/85 (67%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
SGKS+YIKQVAL+ + Q+G YVPA A L DHIYTRI +S + S+F ++ K+I
Sbjct: 600 SGKSIYIKQVALIVFLGQIGSYVPAKSATISLFDHIYTRISSRESNAISESSFMIDCKQI 659
Query: 62 AHIIQFLTPRSLILVDELCRAGIEP 86
A + +F T RSL+++DE + G P
Sbjct: 660 AQMTRFATSRSLLIIDEYGK-GTNP 683
Score = 39 (18.8 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 100 ARTTEQVKNRVLLNHPVFVLQ 120
+ +T+ + N+VL N FV++
Sbjct: 721 SNSTDSIFNKVLFNTMEFVIE 741
>TAIR|locus:2131829 [details] [associations]
symbol:MSH3 "AT4G25540" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IBA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006200 "ATP catabolic process" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030983 "mismatched
DNA binding" evidence=IDA] [GO:0007126 "meiosis" evidence=RCA]
[GO:0007129 "synapsis" evidence=RCA] [GO:0009410 "response to
xenobiotic stimulus" evidence=RCA] [GO:0048522 "positive regulation
of cellular process" evidence=RCA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003684 EMBL:AL022197 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032300 GO:GO:0000404
EMBL:AJ007791 IPI:IPI00524241 PIR:T05793 PIR:T51613
RefSeq:NP_194284.2 UniGene:At.506 ProteinModelPortal:O65607
SMR:O65607 STRING:O65607 PaxDb:O65607 PRIDE:O65607
EnsemblPlants:AT4G25540.1 GeneID:828659 KEGG:ath:AT4G25540
TAIR:At4g25540 HOGENOM:HOG000029776 InParanoid:O65607 KO:K08736
OMA:KRTKSIY PhylomeDB:O65607 ProtClustDB:CLSN2680081
Genevestigator:O65607 GermOnline:AT4G25540 Uniprot:O65607
Length = 1081
Score = 216 (81.1 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 43/81 (53%), Positives = 60/81 (74%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+QVAL+ IMAQVG +VPAS A+ + D ++TR+G +DSI+ STF E+ E
Sbjct: 820 MGGKSCYIRQVALISIMAQVGSFVPASFAKLHVLDGVFTRMGASDSIQHGRSTFLEELSE 879
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+HII+ + RSL+++DEL R
Sbjct: 880 ASHIIRTCSSRSLVILDELGR 900
>UNIPROTKB|Q7NLT8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:251221 "Gloeobacter violaceus PCC 7421" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000045 GenomeReviews:BA000045_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_923979.1 ProteinModelPortal:Q7NLT8
GeneID:2599151 KEGG:gvi:gvip140 PATRIC:22041477
BioCyc:GVIO251221:GH9A-1085-MONOMER Uniprot:Q7NLT8
Length = 890
Score = 213 (80.0 bits), Expect = 3.6e-16, P = 3.6e-16
Identities = 43/81 (53%), Positives = 59/81 (72%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
MSGKS +I+QVAL+Q++AQVG +VPA A +AD I+TR+G D + STF +EM E
Sbjct: 688 MSGKSSFIRQVALIQLLAQVGAFVPARGAVLGVADRIFTRVGAVDDLATGQSTFMVEMTE 747
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A+I+ TPRSL+L+DE+ R
Sbjct: 748 TANILNHATPRSLVLLDEIGR 768
>UNIPROTKB|E1BW06 [details] [associations]
symbol:ECI2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000062 "fatty-acyl-CoA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005102
"receptor binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0009062 "fatty acid catabolic process"
evidence=IEA] InterPro:IPR000582 InterPro:IPR001753 Pfam:PF00378
Pfam:PF00887 PRINTS:PR00689 PROSITE:PS51228 GO:GO:0005739
GO:GO:0003824 Gene3D:1.20.80.10 InterPro:IPR014352 GO:GO:0000062
InterPro:IPR022408 SUPFAM:SSF47027 PROSITE:PS00880 GO:GO:0009062
GeneTree:ENSGT00670000097595 CTD:10455 KO:K13239 OMA:RWLSDEC
EMBL:AADN02036550 IPI:IPI00581571 RefSeq:XP_418965.1
UniGene:Gga.11390 ProteinModelPortal:E1BW06
Ensembl:ENSGALT00000020897 GeneID:420878 KEGG:gga:420878
NextBio:20823732 Uniprot:E1BW06
Length = 397
Score = 206 (77.6 bits), Expect = 3.8e-16, P = 3.8e-16
Identities = 41/98 (41%), Positives = 63/98 (64%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+ATFHTPF+ G +PEGCSS LFP+I G++ A+E+L +KL A EA G V+ VF
Sbjct: 268 RATFHTPFSQLGQSPEGCSSYLFPKIMGSAKANEILLFNKKLTAAEACALGLVNEVFPDS 327
Query: 180 EIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDG-HA 216
++++W R+ A+A L +++ L+R I ++ HA
Sbjct: 328 TFQKEVWARLKAYASLPKNSLAVSKQLLRNIEKEKLHA 365
>DICTYBASE|DDB_G0283957 [details] [associations]
symbol:msh4 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=ISS;IBA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0000228
"nuclear chromosome" evidence=ISS] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0283957 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
EMBL:AAFI02000058 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 KO:K08740 SUPFAM:SSF48334
SUPFAM:SSF53150 OMA:MSGKSVY RefSeq:XP_638826.1
ProteinModelPortal:Q54QB8 EnsemblProtists:DDB0229912 GeneID:8624350
KEGG:ddi:DDB_G0283957 InParanoid:Q54QB8 ProtClustDB:CLSZ2728957
Uniprot:Q54QB8
Length = 1041
Score = 213 (80.0 bits), Expect = 4.5e-16, P = 4.5e-16
Identities = 42/81 (51%), Positives = 60/81 (74%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
MSGKS YI+QVALL I+A +G ++PA A + D I +R+G +D+I+ NASTF EMKE
Sbjct: 799 MSGKSTYIQQVALLTIVAHIGYFLPAEFATVPIVDQIISRLGTSDNIQSNASTFMTEMKE 858
Query: 61 IAHIIQFLTPRSLILVDELCR 81
I++I++ T SL+++DEL R
Sbjct: 859 ISYILENTTESSLVIIDELGR 879
>UNIPROTKB|F1PMM1 [details] [associations]
symbol:ECI2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0000062 "fatty-acyl-CoA binding" evidence=IEA]
InterPro:IPR000582 InterPro:IPR001753 Pfam:PF00378 Pfam:PF00887
PRINTS:PR00689 PROSITE:PS51228 GO:GO:0003824 Gene3D:1.20.80.10
InterPro:IPR014352 GO:GO:0000062 SUPFAM:SSF47027
GeneTree:ENSGT00670000097595 CTD:10455 KO:K13239 EMBL:AAEX03017489
RefSeq:XP_535873.3 Ensembl:ENSCAFT00000014971 GeneID:478706
KEGG:cfa:478706 Uniprot:F1PMM1
Length = 370
Score = 203 (76.5 bits), Expect = 6.4e-16, P = 6.4e-16
Identities = 40/98 (40%), Positives = 62/98 (63%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+ATFHTPFT G +PEGCSS FP+I G + A+E+L G+KL A+EA G V+ VF
Sbjct: 241 RATFHTPFTHLGQSPEGCSSYTFPKIMGQAKAAEMLMFGKKLTAREACAQGLVTEVFPDS 300
Query: 180 EIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDG-HA 216
++++W R+ A++KL + + +R + ++ HA
Sbjct: 301 TFQKEVWTRLKAYSKLPRNTLHISKQSIRNLEKEKLHA 338
>UNIPROTKB|F1PML6 [details] [associations]
symbol:ECI2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0000062 "fatty-acyl-CoA binding" evidence=IEA]
InterPro:IPR000582 InterPro:IPR001753 Pfam:PF00378 Pfam:PF00887
PRINTS:PR00689 PROSITE:PS51228 GO:GO:0003824 Gene3D:1.20.80.10
InterPro:IPR014352 GO:GO:0000062 SUPFAM:SSF47027
GeneTree:ENSGT00670000097595 OMA:RWLSDEC EMBL:AAEX03017489
Ensembl:ENSCAFT00000014975 Uniprot:F1PML6
Length = 393
Score = 203 (76.5 bits), Expect = 8.0e-16, P = 8.0e-16
Identities = 40/98 (40%), Positives = 62/98 (63%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+ATFHTPFT G +PEGCSS FP+I G + A+E+L G+KL A+EA G V+ VF
Sbjct: 264 RATFHTPFTHLGQSPEGCSSYTFPKIMGQAKAAEMLMFGKKLTAREACAQGLVTEVFPDS 323
Query: 180 EIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDG-HA 216
++++W R+ A++KL + + +R + ++ HA
Sbjct: 324 TFQKEVWTRLKAYSKLPRNTLHISKQSIRNLEKEKLHA 361
>RGD|1563954 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003684 "damaged DNA
binding" evidence=ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair" evidence=ISO]
[GO:0008150 "biological_process" evidence=ND] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0019237 "centromeric DNA binding" evidence=ISO] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0032302 "MutSbeta complex"
evidence=ISO] [GO:0043570 "maintenance of DNA repeat elements"
evidence=ISO] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO] [GO:0051096 "positive regulation of
helicase activity" evidence=ISO] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=ISO] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0032357 "oxidized
purine DNA binding" evidence=ISO] [GO:0003697 "single-stranded DNA
binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0032139 "dinucleotide insertion or deletion
binding" evidence=ISO] [GO:0032142 "single guanine insertion
binding" evidence=ISO] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=ISO] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 RGD:1563954 GO:GO:0005524
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 GO:GO:0000710
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOGENOM:HOG000029776
GO:GO:0016447 IPI:IPI00196502 UniGene:Rn.162551 EMBL:BC091283
ProteinModelPortal:Q5BJY1 STRING:Q5BJY1 UCSC:RGD:1563954
HOVERGEN:HBG071048 InParanoid:Q5BJY1 ArrayExpress:Q5BJY1
Genevestigator:Q5BJY1 Uniprot:Q5BJY1
Length = 265
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 50/123 (40%), Positives = 68/123 (55%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YIKQVAL+ IMAQ+G YVPA A + D I+TR G D+I STF E+ +
Sbjct: 17 MGGKSSYIKQVALVVIMAQIGSYVPAEEATIGIVDGIFTRRGAADNIYKGRSTFMEELTD 76
Query: 61 IAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFVLQ 120
A IIQ T RSL+++DEL R + L+++ R + + V PV L+
Sbjct: 77 TAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELE 136
Query: 121 ATF 123
+
Sbjct: 137 KRY 139
>UNIPROTKB|F1MLH1 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019237 "centromeric
DNA binding" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0019237 GO:GO:0003697 GO:GO:0043570
GO:GO:0045910 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032302
GO:GO:0032181 GO:GO:0032357 GO:GO:0032142 GO:GO:0051096 OMA:KRTKSIY
GO:GO:0016447 GeneTree:ENSGT00550000074949 EMBL:DAAA02021015
EMBL:DAAA02021016 EMBL:DAAA02021017 EMBL:DAAA02021018
IPI:IPI00867495 Ensembl:ENSBTAT00000010107 Uniprot:F1MLH1
Length = 1120
Score = 210 (79.0 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 49/123 (39%), Positives = 71/123 (57%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YIKQVAL+ +MAQ+G YVPA A + D I+TR+G D+I STF E+ +
Sbjct: 887 MGGKSSYIKQVALITVMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELTD 946
Query: 61 IAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFVLQ 120
A II+ TP+SL+++DEL R + L+H+ R + + V PV L+
Sbjct: 947 TAEIIRKATPQSLVILDELGRGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHYPPVCELE 1006
Query: 121 ATF 123
++
Sbjct: 1007 KSY 1009
>UNIPROTKB|A9WFZ9 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:324602 "Chloroflexus aurantiacus J-10-fl" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:CP000909 GenomeReviews:CP000909_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:YP_001636542.1 ProteinModelPortal:A9WFZ9
STRING:A9WFZ9 GeneID:5827426 KEGG:cau:Caur_2954 PATRIC:21417221
ProtClustDB:CLSK2477234 BioCyc:CAUR324602:GIXU-3001-MONOMER
Uniprot:A9WFZ9
Length = 966
Score = 209 (78.6 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 42/81 (51%), Positives = 57/81 (70%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS +++QVAL+ +MAQ+G +VPA AE L D I+TRIG D I STF +EM E
Sbjct: 712 MAGKSTFLRQVALITLMAQIGSFVPADEAEIGLVDRIFTRIGAQDDIATGQSTFMVEMTE 771
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A ++ TPRSLI++DE+ R
Sbjct: 772 TAALLMQSTPRSLIILDEVGR 792
>UNIPROTKB|F1MWY9 [details] [associations]
symbol:ECI2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0009062 "fatty acid catabolic process" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005102 "receptor
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0000062 "fatty-acyl-CoA binding" evidence=IEA]
InterPro:IPR000582 InterPro:IPR001753 Pfam:PF00378 Pfam:PF00887
PRINTS:PR00689 PROSITE:PS51228 GO:GO:0005739 GO:GO:0003824
Gene3D:1.20.80.10 InterPro:IPR014352 GO:GO:0000062
InterPro:IPR022408 SUPFAM:SSF47027 PROSITE:PS00880 GO:GO:0009062
GeneTree:ENSGT00670000097595 OMA:RWLSDEC EMBL:DAAA02055879
IPI:IPI00842951 Ensembl:ENSBTAT00000020196 ArrayExpress:F1MWY9
Uniprot:F1MWY9
Length = 374
Score = 201 (75.8 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 38/89 (42%), Positives = 59/89 (66%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A+FHTPF+ G +PEGCSS FP+I G+S A+E+L G+KL AQEA G V+ VF
Sbjct: 245 RASFHTPFSHLGQSPEGCSSYTFPKIMGSSKAAEMLLFGKKLTAQEACAQGLVTEVFPDG 304
Query: 180 EIERDLWPRIHAWAKLSSCIVSLLAHLMR 208
++++W R+ A++KL + + ++R
Sbjct: 305 TFQKEVWARLKAYSKLPPNAMRISKQIIR 333
>UNIPROTKB|Q8TTB4 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:188937 "Methanosarcina acetivorans C2A" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE010299 GenomeReviews:AE010299_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_615487.1 ProteinModelPortal:Q8TTB4
GeneID:1472415 KEGG:mac:MA0523 BioCyc:MACE188937:GI2O-590-MONOMER
Uniprot:Q8TTB4
Length = 900
Score = 205 (77.2 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 40/81 (49%), Positives = 58/81 (71%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS Y++Q AL+ IMAQVG +VPAS A + D ++TRIG D + STF +EM E
Sbjct: 640 MAGKSTYMRQTALIAIMAQVGSFVPASYASVGIIDQVFTRIGAFDDLASGQSTFMVEMVE 699
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+A+I+ +P+SL+L+DE+ R
Sbjct: 700 LANILNNASPKSLVLLDEIGR 720
>UNIPROTKB|Q7S0U7 [details] [associations]
symbol:NCU07407 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0043504 "mitochondrial DNA repair" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IRD] [GO:0000404 "loop DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0007131 "reciprocal meiotic recombination" evidence=IRD]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0008094 GO:GO:0043504 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150
GO:GO:0032300 GO:GO:0032139 OMA:RVGGFYE EMBL:AABX02000038
RefSeq:XP_958182.2 UniGene:Ncr.21352 EnsemblFungi:EFNCRT00000007377
GeneID:3874329 KEGG:ncr:NCU07407 Uniprot:Q7S0U7
Length = 1184
Score = 206 (77.6 bits), Expect = 3.0e-15, P = 3.0e-15
Identities = 40/86 (46%), Positives = 61/86 (70%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS +++Q AL+ I+AQ+GCYVPA AE + D I++R+G D++ + STF +EM E
Sbjct: 986 MAGKSTFLRQNALITILAQMGCYVPADYAELGIVDAIFSRVGSADNLYADQSTFMVEMME 1045
Query: 61 IAHIIQFLTPRSLILVDELCRAGIEP 86
A I++ TPRS +++DE+ R G P
Sbjct: 1046 TAAILRQATPRSFVIMDEIGR-GTTP 1070
>WB|WBGene00001872 [details] [associations]
symbol:him-14 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0045143 "homologous
chromosome segregation" evidence=IMP] [GO:0051026 "chiasma
assembly" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 Pfam:PF00488 Pfam:PF05188 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
EMBL:FO081697 GO:GO:0000239 GO:GO:0008094 GO:GO:0051026
GO:GO:0000712 GO:GO:0045143 GO:GO:0000795 EMBL:AF178755 PIR:E88197
RefSeq:NP_495451.1 UniGene:Cel.22695 ProteinModelPortal:Q23405
SMR:Q23405 STRING:Q23405 PaxDb:Q23405 EnsemblMetazoa:ZK1127.11
GeneID:174157 KEGG:cel:CELE_ZK1127.11 UCSC:ZK1127.11 CTD:174157
WormBase:ZK1127.11 eggNOG:COG0249 GeneTree:ENSGT00550000074897
HOGENOM:HOG000015880 InParanoid:Q23405 KO:K08740 OMA:GFFIQMT
NextBio:882779 GermOnline:ZK1127.11 Gene3D:3.30.420.110
SUPFAM:SSF48334 Uniprot:Q23405
Length = 842
Score = 204 (76.9 bits), Expect = 3.0e-15, P = 3.0e-15
Identities = 38/82 (46%), Positives = 57/82 (69%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS Y+KQ A L IMAQ+GC++PA+ A + + I++R+G ND + N S FA EM +
Sbjct: 591 MAGKSTYLKQTAQLAIMAQIGCFIPANYASLPIFNRIFSRMGHNDELIRNKSAFASEMSD 650
Query: 61 IAHIIQFLTPRSLILVDELCRA 82
A I+Q+ SL+++DEL R+
Sbjct: 651 AAAIVQYADKNSLVVLDELARS 672
>UNIPROTKB|Q23405 [details] [associations]
symbol:him-14 "MutS protein homolog him-14" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IMP] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IMP]
[GO:0000239 "pachytene" evidence=IMP] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 Pfam:PF00488 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009792 GO:GO:0051729 GO:GO:0006298
GO:GO:0030983 EMBL:FO081697 GO:GO:0000239 GO:GO:0008094
GO:GO:0051026 GO:GO:0000712 GO:GO:0045143 GO:GO:0000795
EMBL:AF178755 PIR:E88197 RefSeq:NP_495451.1 UniGene:Cel.22695
ProteinModelPortal:Q23405 SMR:Q23405 STRING:Q23405 PaxDb:Q23405
EnsemblMetazoa:ZK1127.11 GeneID:174157 KEGG:cel:CELE_ZK1127.11
UCSC:ZK1127.11 CTD:174157 WormBase:ZK1127.11 eggNOG:COG0249
GeneTree:ENSGT00550000074897 HOGENOM:HOG000015880 InParanoid:Q23405
KO:K08740 OMA:GFFIQMT NextBio:882779 GermOnline:ZK1127.11
Gene3D:3.30.420.110 SUPFAM:SSF48334 Uniprot:Q23405
Length = 842
Score = 204 (76.9 bits), Expect = 3.0e-15, P = 3.0e-15
Identities = 38/82 (46%), Positives = 57/82 (69%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS Y+KQ A L IMAQ+GC++PA+ A + + I++R+G ND + N S FA EM +
Sbjct: 591 MAGKSTYLKQTAQLAIMAQIGCFIPANYASLPIFNRIFSRMGHNDELIRNKSAFASEMSD 650
Query: 61 IAHIIQFLTPRSLILVDELCRA 82
A I+Q+ SL+++DEL R+
Sbjct: 651 AAAIVQYADKNSLVVLDELARS 672
>UNIPROTKB|A4R0R0 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0005634
GO:GO:0006298 EMBL:CM001231 GO:GO:0030983 eggNOG:COG0249
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08736
OrthoDB:EOG42NN7M RefSeq:XP_003709956.1 STRING:A4R0R0
EnsemblFungi:MGG_09306T0 GeneID:2680221 KEGG:mgr:MGG_09306
Uniprot:A4R0R0
Length = 1151
Score = 205 (77.2 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 44/103 (42%), Positives = 64/103 (62%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS +++ +ALL ++AQVG +VPA L+D IYTR+G +D++ STF +E+ E
Sbjct: 916 MGGKSSFVRALALLVLLAQVGSFVPADSLRLTLSDAIYTRMGASDNLFAGESTFMVEVGE 975
Query: 61 IAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTT 103
A I++ TPRSL+L+DEL R + + LDH R T
Sbjct: 976 TAAILRTATPRSLVLLDELGRGTSTHDGAAIAHAVLDHVVRNT 1018
>TIGR_CMR|DET_1219 [details] [associations]
symbol:DET_1219 "DNA mismatch repair protein MutS"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_181932.1 ProteinModelPortal:Q3Z767
STRING:Q3Z767 GeneID:3229472 KEGG:det:DET1219 PATRIC:21609473
OMA:HIHAKTL BioCyc:DETH243164:GJNF-1220-MONOMER Uniprot:Q3Z767
Length = 858
Score = 203 (76.5 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 40/81 (49%), Positives = 55/81 (67%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS Y+KQ AL+ +MAQ+G YVPA AE L D I++RIG + + STF +EM E
Sbjct: 616 MAGKSTYLKQTALIVLMAQIGSYVPAETAELCLTDRIFSRIGAREDLSAGQSTFMVEMVE 675
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I+ T RSL+++DE+ R
Sbjct: 676 TASILNTATSRSLLILDEIGR 696
>UNIPROTKB|Q3KKQ0 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:315277 "Chlamydia trachomatis A/HAR-13" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:CP000051 GenomeReviews:CP000051_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_328620.1
ProteinModelPortal:Q3KKQ0 STRING:Q3KKQ0 GeneID:3687872
KEGG:cta:CTA_0862 PATRIC:32023672
BioCyc:CTRA315277:GI4C-873-MONOMER Uniprot:Q3KKQ0
Length = 820
Score = 202 (76.2 bits), Expect = 4.7e-15, P = 4.7e-15
Identities = 40/81 (49%), Positives = 57/81 (70%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS YI+Q+ALL IMAQ+G ++PA A + D I+TRIG D++ STF +EM E
Sbjct: 621 MAGKSTYIRQIALLVIMAQMGSFIPARSAHIGIVDKIFTRIGAGDNLSKGMSTFMVEMAE 680
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A+I+ T RSL+++DE+ R
Sbjct: 681 TANILHNATDRSLVILDEIGR 701
>UNIPROTKB|F1P9S9 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:KRTKSIY
GeneTree:ENSGT00550000074949 EMBL:AAEX03002106
Ensembl:ENSCAFT00000013983 Uniprot:F1P9S9
Length = 1058
Score = 203 (76.5 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 49/123 (39%), Positives = 70/123 (56%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YIKQVAL+ IMAQ+G YVPA A + D I+TR+G D+I STF E+ +
Sbjct: 822 MGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELMD 881
Query: 61 IAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFVLQ 120
A II+ T +SL+++DEL R + L+H+ R + + V PV L+
Sbjct: 882 TAEIIRQATSQSLVILDELGRGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHYPPVCELE 941
Query: 121 ATF 123
++
Sbjct: 942 KSY 944
>RGD|1310224 [details] [associations]
symbol:Eci3 "enoyl-Coenzyme A delta isomerase 3" species:10116
"Rattus norvegicus" [GO:0003824 "catalytic activity" evidence=IEA]
InterPro:IPR001753 Pfam:PF00378 RGD:1310224 GO:GO:0003824
eggNOG:COG1024 HOVERGEN:HBG006723 GeneTree:ENSGT00670000097595
OrthoDB:EOG49P9ZK HOGENOM:HOG000027944 EMBL:BC088178
IPI:IPI00362963 RefSeq:NP_001009275.1 UniGene:Rn.3194 SMR:Q5M884
Ensembl:ENSRNOT00000048923 GeneID:291076 KEGG:rno:291076
UCSC:RGD:1310224 CTD:69123 InParanoid:Q5M884 OMA:HEAYIAG
NextBio:632075 Genevestigator:Q5M884 Uniprot:Q5M884
Length = 303
Score = 191 (72.3 bits), Expect = 5.6e-15, P = 5.6e-15
Identities = 38/89 (42%), Positives = 55/89 (61%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+ATFHTPF G PE CSS FP++ G++ A+E+L G+KL A+EA G V+ VF
Sbjct: 174 RATFHTPFIHLGQNPEACSSYTFPKMMGSAKAAEMLLFGKKLTAREAWAQGLVTEVFPES 233
Query: 180 EIERDLWPRIHAWAKLSSCIVSLLAHLMR 208
E ++W R+ +AKLS + + L+R
Sbjct: 234 TFETEVWTRLKTYAKLSPNGMRVFKELIR 262
>CGD|CAL0002525 [details] [associations]
symbol:orf19.2579 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0002525 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AACQ01000044 EMBL:AACQ01000043 KO:K08740
SUPFAM:SSF48334 SUPFAM:SSF53150 RefSeq:XP_718245.1
RefSeq:XP_718341.1 ProteinModelPortal:Q5A989 STRING:Q5A989
GeneID:3639992 GeneID:3640161 KEGG:cal:CaO19.10111
KEGG:cal:CaO19.2579 Uniprot:Q5A989
Length = 803
Score = 201 (75.8 bits), Expect = 5.9e-15, P = 5.9e-15
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
MSGKSVY++Q+A L IMAQ+GC+VPA A R+ + +Y+RI +D+++ NAS+F+ EM E
Sbjct: 560 MSGKSVYLRQIAYLVIMAQMGCFVPAEYARMRIFNSLYSRIS-SDNVDINASSFSKEMSE 618
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I+ SLIL+DEL R
Sbjct: 619 TAVILNDSDGDSLILIDELGR 639
>UNIPROTKB|C9J000 [details] [associations]
symbol:ECI2 "Enoyl-CoA delta isomerase 2, mitochondrial"
species:9606 "Homo sapiens" [GO:0003824 "catalytic activity"
evidence=IEA] InterPro:IPR001753 Pfam:PF00378 GO:GO:0003824
EMBL:AL033383 HGNC:HGNC:14601 HOGENOM:HOG000027944 IPI:IPI01012390
ProteinModelPortal:C9J000 SMR:C9J000 STRING:C9J000
Ensembl:ENST00000413766 ArrayExpress:C9J000 Bgee:C9J000
Uniprot:C9J000
Length = 227
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 36/76 (47%), Positives = 51/76 (67%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+ATFHTPF+ G +PEGCSS FP+I + A+E+L G+KL A EA G V+ VF
Sbjct: 98 RATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDS 157
Query: 180 EIERDLWPRIHAWAKL 195
++++W R+ A+AKL
Sbjct: 158 TFQKEVWTRLKAFAKL 173
>ASPGD|ASPL0000012704 [details] [associations]
symbol:AN3749 species:162425 "Emericella nidulans"
[GO:0061500 "gene conversion at mating-type locus, termination of
copy-synthesis" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 201 (75.8 bits), Expect = 9.2e-15, P = 9.2e-15
Identities = 39/81 (48%), Positives = 57/81 (70%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y++QVAL+ IM Q+G YVPA A+ + D ++TR+G D++ STF +E+ E
Sbjct: 880 MGGKSSYVRQVALIAIMGQIGSYVPAQAAKLGMLDAVFTRMGAFDNMLAGESTFMVELSE 939
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I++ TPRSL+++DEL R
Sbjct: 940 TADILKQATPRSLVILDELGR 960
>UNIPROTKB|Q5B6T1 [details] [associations]
symbol:msh3 "DNA mismatch repair protein msh3"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
EMBL:BN001302 EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 201 (75.8 bits), Expect = 9.2e-15, P = 9.2e-15
Identities = 39/81 (48%), Positives = 57/81 (70%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y++QVAL+ IM Q+G YVPA A+ + D ++TR+G D++ STF +E+ E
Sbjct: 880 MGGKSSYVRQVALIAIMGQIGSYVPAQAAKLGMLDAVFTRMGAFDNMLAGESTFMVELSE 939
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I++ TPRSL+++DEL R
Sbjct: 940 TADILKQATPRSLVILDELGR 960
>MGI|MGI:1346064 [details] [associations]
symbol:Eci2 "enoyl-Coenzyme A delta isomerase 2"
species:10090 "Mus musculus" [GO:0000062 "fatty-acyl-CoA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0004165 "dodecenoyl-CoA delta-isomerase activity"
evidence=ISO;ISS] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=ISO;IDA] [GO:0005777
"peroxisome" evidence=ISO;IDA] [GO:0005782 "peroxisomal matrix"
evidence=ISO;ISS] [GO:0006635 "fatty acid beta-oxidation"
evidence=ISO] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0009062 "fatty acid catabolic process" evidence=ISO;ISS]
[GO:0016853 "isomerase activity" evidence=IEA] [GO:0016863
"intramolecular oxidoreductase activity, transposing C=C bonds"
evidence=ISO] InterPro:IPR000582 InterPro:IPR001753 Pfam:PF00378
Pfam:PF00887 PRINTS:PR00689 PROSITE:PS51228 MGI:MGI:1346064
GO:GO:0005739 GO:GO:0005777 Gene3D:1.20.80.10 InterPro:IPR014352
GO:GO:0006635 GO:GO:0005782 GO:GO:0000062 eggNOG:COG4281
InterPro:IPR022408 SUPFAM:SSF47027 PROSITE:PS00880 GO:GO:0004165
GO:GO:0009062 HOVERGEN:HBG006723 GeneTree:ENSGT00670000097595
CTD:10455 KO:K13239 OMA:RWLSDEC OrthoDB:EOG49P9ZK EMBL:AF153613
EMBL:AK009478 EMBL:BC001983 IPI:IPI00322931 IPI:IPI00877214
RefSeq:NP_001103801.1 RefSeq:NP_001103802.1 RefSeq:NP_035998.2
UniGene:Mm.28883 ProteinModelPortal:Q9WUR2 SMR:Q9WUR2 IntAct:Q9WUR2
STRING:Q9WUR2 PhosphoSite:Q9WUR2 PaxDb:Q9WUR2 PRIDE:Q9WUR2
Ensembl:ENSMUST00000021854 Ensembl:ENSMUST00000171229
Ensembl:ENSMUST00000178421 GeneID:23986 KEGG:mmu:23986
UCSC:uc007qbx.2 UCSC:uc007qbz.2 InParanoid:Q9D785 NextBio:303881
Bgee:Q9WUR2 Genevestigator:Q9WUR2 GermOnline:ENSMUSG00000021417
Uniprot:Q9WUR2
Length = 391
Score = 192 (72.6 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 37/89 (41%), Positives = 56/89 (62%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+ATFHTPF+ G +PE CSS FP++ G++ A+E+L G+KL A+EA G V+ VF
Sbjct: 262 RATFHTPFSQLGQSPEACSSYTFPKMMGSAKAAEMLLFGKKLTAREAWAQGLVTEVFPES 321
Query: 180 EIERDLWPRIHAWAKLSSCIVSLLAHLMR 208
E ++W R+ +AKL + + L+R
Sbjct: 322 TFETEVWTRLKTYAKLPPNAMRISKELIR 350
>TIGR_CMR|SO_3431 [details] [associations]
symbol:SO_3431 "DNA mismatch repair protein MutS"
species:211586 "Shewanella oneidensis MR-1" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_718984.1
ProteinModelPortal:Q8EBR9 SMR:Q8EBR9 GeneID:1171106
KEGG:son:SO_3431 PATRIC:23526550 Uniprot:Q8EBR9
Length = 856
Score = 198 (74.8 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 39/81 (48%), Positives = 55/81 (67%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y++QVAL+ +MA +GC+VPA A D I+TRIG +D + STF +EM E
Sbjct: 621 MGGKSTYMRQVALITLMAHIGCFVPAERATIGPIDRIFTRIGASDDLASGRSTFMVEMTE 680
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A+I+ T +SL+L+DE+ R
Sbjct: 681 TANILHNATAQSLVLMDEIGR 701
>DICTYBASE|DDB_G0268614 [details] [associations]
symbol:msh6 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0032301 "MutSalpha
complex" evidence=ISS;IBA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0268614
GO:GO:0005524 GO:GO:0009411 GenomeReviews:CM000150_GR GO:GO:0003684
EMBL:AAFI02000003 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 RefSeq:XP_647085.1 STRING:Q55GU9 PRIDE:Q55GU9
EnsemblProtists:DDB0229918 GeneID:8615889 KEGG:ddi:DDB_G0268614
ProtClustDB:CLSZ2497299 Uniprot:Q55GU9
Length = 1260
Score = 200 (75.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 38/81 (46%), Positives = 56/81 (69%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS ++Q +L IMAQ+GCYV AS E + D I+TR+G ND+I STF +E+ E
Sbjct: 1030 MGGKSTLLRQSCILVIMAQMGCYVSASSCEMSIVDRIFTRLGANDNILAGQSTFMVELAE 1089
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+ ++++ T RSL+++DEL R
Sbjct: 1090 TSAVLKYATKRSLVILDELGR 1110
>UNIPROTKB|F1LXQ9 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 RGD:1563954 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 IPI:IPI00950406
Ensembl:ENSRNOT00000067613 ArrayExpress:F1LXQ9 Uniprot:F1LXQ9
Length = 266
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 50/125 (40%), Positives = 68/125 (54%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRI--GFNDSIECNASTFALEM 58
M GKS YIKQVAL+ IMAQ+G YVPA A + D I+TR G D+I STF E+
Sbjct: 16 MGGKSSYIKQVALVVIMAQIGSYVPAEEATIGIVDGIFTRQRRGAADNIYKGRSTFMEEL 75
Query: 59 KEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFV 118
+ A IIQ T RSL+++DEL R + L+++ R + + V PV
Sbjct: 76 TDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE 135
Query: 119 LQATF 123
L+ +
Sbjct: 136 LEKRY 140
>UNIPROTKB|E1C1F8 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074949 EMBL:AADN02047884 EMBL:AADN02047885
EMBL:AADN02047886 EMBL:AADN02047887 EMBL:AADN02047888
EMBL:AADN02047889 IPI:IPI00586936 Ensembl:ENSGALT00000025135
OMA:LLLDCQR Uniprot:E1C1F8
Length = 598
Score = 195 (73.7 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 44/106 (41%), Positives = 62/106 (58%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YIKQVAL+ +MAQ+G YVPA + + D I+TR+G D+I STF E+ +
Sbjct: 359 MGGKSSYIKQVALITVMAQIGSYVPAEESTVGIVDGIFTRMGAADNIYKGRSTFMEELTD 418
Query: 61 IAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQV 106
A II+ T RSL+++DEL R + L+H+ E +
Sbjct: 419 TAEIIRRATSRSLVILDELGRGTSTHDGIAIAYATLEHFITDVESL 464
>RGD|2322311 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0003684 "damaged DNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0008340 "determination of adult lifespan"
evidence=ISO] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISO] [GO:0009411 "response to UV"
evidence=ISO] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISO] [GO:0030983 "mismatched
DNA binding" evidence=IEA;ISO] [GO:0032137 "guanine/thymine mispair
binding" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=ISO] [GO:0045190 "isotype switching" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] [GO:0097193 "intrinsic apoptotic signaling
pathway" evidence=ISO] [GO:0042803 "protein homodimerization
activity" evidence=ISO] [GO:0043570 "maintenance of DNA repeat
elements" evidence=ISO] [GO:0000287 "magnesium ion binding"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0032142 "single guanine insertion binding" evidence=ISO]
[GO:0032143 "single thymine insertion binding" evidence=ISO]
[GO:0032357 "oxidized purine DNA binding" evidence=ISO] [GO:0032405
"MutLalpha complex binding" evidence=ISO] [GO:0043531 "ADP binding"
evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 RGD:2322311 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0000287 GO:GO:0043531
GO:GO:0003682 GO:GO:0016887 GO:GO:0006298 GO:GO:0000790
GO:GO:0045190 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 EMBL:CH473947 GO:GO:0016446 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 OrthoDB:EOG4CG07F IPI:IPI00369351
RefSeq:XP_002726765.1 RefSeq:XP_002729643.2
Ensembl:ENSRNOT00000021923 GeneID:100360342 KEGG:rno:100360342
UCSC:RGD:2322311 Uniprot:D4A0U9
Length = 1361
Score = 199 (75.1 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 40/81 (49%), Positives = 52/81 (64%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS I+Q LL +MAQ+GCYVPA L D ++TR+G +D I STF +E+ E
Sbjct: 1138 MGGKSTLIRQAGLLAVMAQMGCYVPAELCRLTPVDRVFTRLGASDRIMSGESTFFVELSE 1197
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I++ T SL+LVDEL R
Sbjct: 1198 TASILRHATAHSLVLVDELGR 1218
>RGD|1359427 [details] [associations]
symbol:Eci2 "enoyl-CoA delta isomerase 2" species:10116 "Rattus
norvegicus" [GO:0000062 "fatty-acyl-CoA binding" evidence=IEA]
[GO:0004165 "dodecenoyl-CoA delta-isomerase activity"
evidence=IEA;ISO] [GO:0005102 "receptor binding" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=ISO;IDA] [GO:0005777
"peroxisome" evidence=ISO;IDA] [GO:0005782 "peroxisomal matrix"
evidence=IEA;ISO] [GO:0006635 "fatty acid beta-oxidation"
evidence=IDA] [GO:0009062 "fatty acid catabolic process"
evidence=ISO] [GO:0016863 "intramolecular oxidoreductase activity,
transposing C=C bonds" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] InterPro:IPR000582
InterPro:IPR001753 Pfam:PF00378 Pfam:PF00887 PRINTS:PR00689
PROSITE:PS51228 RGD:1359427 GO:GO:0005739 GO:GO:0005777
Gene3D:1.20.80.10 InterPro:IPR014352 GO:GO:0006635 GO:GO:0005782
GO:GO:0000062 eggNOG:COG4281 InterPro:IPR022408 SUPFAM:SSF47027
PROSITE:PS00880 HSSP:O75521 GO:GO:0004165
GeneTree:ENSGT00670000097595 CTD:10455 KO:K13239 OMA:RWLSDEC
OrthoDB:EOG49P9ZK EMBL:BC083764 IPI:IPI00208203
RefSeq:NP_001006967.1 UniGene:Rn.108029 ProteinModelPortal:Q5XIC0
SMR:Q5XIC0 PhosphoSite:Q5XIC0 PRIDE:Q5XIC0
Ensembl:ENSRNOT00000022022 GeneID:291075 KEGG:rno:291075
UCSC:RGD:1359427 InParanoid:Q5XIC0 SABIO-RK:Q5XIC0 NextBio:632071
Genevestigator:Q5XIC0 GO:GO:0016863 Uniprot:Q5XIC0
Length = 391
Score = 190 (71.9 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 37/89 (41%), Positives = 56/89 (62%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+ATFHTPF+ G +PE CSS FP++ G++ A+E+L G+KL A+EA G V+ VF
Sbjct: 262 RATFHTPFSHLGQSPEACSSYTFPKMMGSAKAAEMLLFGKKLTAREAWAQGLVTEVFPES 321
Query: 180 EIERDLWPRIHAWAKLSSCIVSLLAHLMR 208
E ++W R+ +AKL + + L+R
Sbjct: 322 TFETEVWTRLKTYAKLPPNSMRISKELIR 350
>UNIPROTKB|P61667 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000014 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00091 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 196 (74.1 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 38/81 (46%), Positives = 58/81 (71%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS +++QVAL+ +MAQ G +VPA A + D I+TR+G +D++ STF +EM E
Sbjct: 624 MAGKSTFMRQVALIVLMAQTGSFVPADEASIGVVDRIFTRVGASDNLARGQSTFMVEMME 683
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I++ TPRSL+++DE+ R
Sbjct: 684 TAAILRNATPRSLVVLDEIGR 704
>TIGR_CMR|GSU_1822 [details] [associations]
symbol:GSU_1822 "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000014 InterPro:IPR000432
InterPro:IPR005748 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00091 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0003684 GO:GO:0006298 GO:GO:0004871
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 196 (74.1 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 38/81 (46%), Positives = 58/81 (71%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS +++QVAL+ +MAQ G +VPA A + D I+TR+G +D++ STF +EM E
Sbjct: 624 MAGKSTFMRQVALIVLMAQTGSFVPADEASIGVVDRIFTRVGASDNLARGQSTFMVEMME 683
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I++ TPRSL+++DE+ R
Sbjct: 684 TAAILRNATPRSLVVLDEIGR 704
>UNIPROTKB|F1LQM8 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0003697 "single-stranded DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 RGD:1563954 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08736 CTD:4437
GeneTree:ENSGT00550000074949 IPI:IPI00196502 RefSeq:NP_001178886.1
UniGene:Rn.162551 Ensembl:ENSRNOT00000018449 GeneID:499505
KEGG:rno:499505 NextBio:703076 ArrayExpress:F1LQM8 Uniprot:F1LQM8
Length = 1105
Score = 197 (74.4 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 50/123 (40%), Positives = 68/123 (55%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YIKQVAL+ IMAQ+G YVPA A + D I+TR G D+I STF E+ +
Sbjct: 857 MGGKSSYIKQVALVVIMAQIGSYVPAEEATIGIVDGIFTRRGAADNIYKGRSTFMEELTD 916
Query: 61 IAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFVLQ 120
A IIQ T RSL+++DEL R + L+++ R + + V PV L+
Sbjct: 917 TAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELE 976
Query: 121 ATF 123
+
Sbjct: 977 KRY 979
>UNIPROTKB|O75521 [details] [associations]
symbol:ECI2 "Enoyl-CoA delta isomerase 2, mitochondrial"
species:9606 "Homo sapiens" [GO:0000062 "fatty-acyl-CoA binding"
evidence=IEA] [GO:0004165 "dodecenoyl-CoA delta-isomerase activity"
evidence=IEA;IDA] [GO:0005782 "peroxisomal matrix"
evidence=IEA;IDA] [GO:0009062 "fatty acid catabolic process"
evidence=IDA] [GO:0005102 "receptor binding" evidence=IPI]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR000582 InterPro:IPR001753 Pfam:PF00378 Pfam:PF00887
PRINTS:PR00689 PROSITE:PS51228 GO:GO:0005739 Gene3D:1.20.80.10
InterPro:IPR014352 GO:GO:0005782 GO:GO:0000062 eggNOG:COG4281
InterPro:IPR022408 SUPFAM:SSF47027 PROSITE:PS00880 GO:GO:0004165
GO:GO:0009062 HOVERGEN:HBG006723 EMBL:AF069301 EMBL:AL136642
EMBL:AK075108 EMBL:AL033383 EMBL:BC002668 EMBL:BC016781
EMBL:BC017474 EMBL:BC033841 EMBL:BC034702 EMBL:AF153612
EMBL:AF244138 IPI:IPI00419263 IPI:IPI00639841 RefSeq:NP_001159482.1
RefSeq:NP_006108.2 RefSeq:NP_996667.2 UniGene:Hs.15250 PDB:2CQU
PDB:2F6Q PDBsum:2CQU PDBsum:2F6Q ProteinModelPortal:O75521
SMR:O75521 IntAct:O75521 STRING:O75521 PhosphoSite:O75521
REPRODUCTION-2DPAGE:IPI00419263 UCD-2DPAGE:O75521 PaxDb:O75521
PRIDE:O75521 DNASU:10455 Ensembl:ENST00000361538
Ensembl:ENST00000380118 Ensembl:ENST00000380125
Ensembl:ENST00000465828 GeneID:10455 KEGG:hsa:10455 UCSC:uc003mwc.3
CTD:10455 GeneCards:GC06M004115 H-InvDB:HIX0025043 HGNC:HGNC:14601
HPA:HPA022130 MIM:608024 neXtProt:NX_O75521 PharmGKB:PA33168
InParanoid:O75521 KO:K13239 OMA:RWLSDEC OrthoDB:EOG49P9ZK
EvolutionaryTrace:O75521 GenomeRNAi:10455 NextBio:39633
ArrayExpress:O75521 Bgee:O75521 Genevestigator:O75521
GermOnline:ENSG00000198721 Uniprot:O75521
Length = 394
Score = 189 (71.6 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 36/76 (47%), Positives = 51/76 (67%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+ATFHTPF+ G +PEGCSS FP+I + A+E+L G+KL A EA G V+ VF
Sbjct: 265 RATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDS 324
Query: 180 EIERDLWPRIHAWAKL 195
++++W R+ A+AKL
Sbjct: 325 TFQKEVWTRLKAFAKL 340
>UNIPROTKB|O13396 [details] [associations]
symbol:msh-2 "DNA mismatch repair protein msh-2"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:AF030634 EMBL:AABX02000010
RefSeq:XP_959643.1 UniGene:Ncr.25288 ProteinModelPortal:O13396
STRING:O13396 EnsemblFungi:EFNCRT00000003090 GeneID:3875790
KEGG:ncr:NCU02230 OrthoDB:EOG4S7NZ5 GO:GO:0000735 Uniprot:O13396
Length = 937
Score = 195 (73.7 bits), Expect = 3.2e-14, P = 3.2e-14
Identities = 39/81 (48%), Positives = 54/81 (66%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+Q+ ++ +MAQ+GC+VP S AE + D I R+G +DS STF EM E
Sbjct: 662 MGGKSTYIRQIGVIALMAQIGCFVPCSSAELTIFDSILARVGASDSQLKGVSTFMAEMLE 721
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A+I++ T SLI++DEL R
Sbjct: 722 TANILKSATAESLIIIDELGR 742
>UNIPROTKB|P20585 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein Msh3" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0016447 "somatic recombination of immunoglobulin gene segments"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0019899 "enzyme binding" evidence=IPI] [GO:0032302 "MutSbeta
complex" evidence=IDA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IMP] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0019237 EMBL:AC008434 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0045910 MIM:608089
GO:GO:0008094 UniGene:Hs.648635 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0051096 PDB:3THW PDB:3THX PDB:3THY PDB:3THZ PDBsum:3THW
PDBsum:3THX PDBsum:3THY PDBsum:3THZ HOGENOM:HOG000029776 KO:K08736
EMBL:J04810 EMBL:U61981 EMBL:D61419 EMBL:AY275681 EMBL:AC010270
EMBL:AC022493 EMBL:BC011817 EMBL:BC130436 IPI:IPI00329605
PIR:A33507 RefSeq:NP_002430.3 UniGene:Hs.280987
ProteinModelPortal:P20585 SMR:P20585 DIP:DIP-35127N IntAct:P20585
MINT:MINT-192778 STRING:P20585 PhosphoSite:P20585 DMDM:229462953
PaxDb:P20585 PRIDE:P20585 Ensembl:ENST00000265081 GeneID:4437
KEGG:hsa:4437 UCSC:uc003kgz.3 CTD:4437 GeneCards:GC05P079986
H-InvDB:HIX0032037 HGNC:HGNC:7326 HPA:HPA036080 HPA:HPA036081
MIM:600887 neXtProt:NX_P20585 PharmGKB:PA31134 HOVERGEN:HBG006400
InParanoid:P20585 OMA:HYFELTV OrthoDB:EOG434W57 GenomeRNAi:4437
NextBio:17293 ArrayExpress:P20585 Bgee:P20585 CleanEx:HS_MSH3
Genevestigator:P20585 GermOnline:ENSG00000113318 GO:GO:0016447
Uniprot:P20585
Length = 1137
Score = 196 (74.1 bits), Expect = 3.3e-14, P = 3.3e-14
Identities = 48/123 (39%), Positives = 69/123 (56%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YIKQVAL+ IMAQ+G YVPA A + D I+TR+G D+I STF E+ +
Sbjct: 899 MGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQSTFMEELTD 958
Query: 61 IAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFVLQ 120
A II+ T +SL+++DEL R + L+++ R + + V PV L+
Sbjct: 959 TAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELE 1018
Query: 121 ATF 123
+
Sbjct: 1019 KNY 1021
>POMBASE|SPBC19G7.01c [details] [associations]
symbol:msh2 "MutS protein homolog 2" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0000403 "Y-form DNA binding" evidence=ISO]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IGI;IMP] [GO:0007534 "gene
conversion at mating-type locus" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IMP] [GO:0000404
"loop DNA binding" evidence=ISO] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO] [GO:0032138 "single base insertion
or deletion binding" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPBC19G7.01c
GO:GO:0005829 GO:GO:0005524 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0016887 GO:GO:0006298 GO:GO:0030983 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032301 HOGENOM:HOG000196498 KO:K08735
GO:GO:0032302 GO:GO:0000406 OrthoDB:EOG4S7NZ5 EMBL:AJ006948
PIR:T43699 RefSeq:XP_001713136.1 ProteinModelPortal:O74773
STRING:O74773 EnsemblFungi:SPBC19G7.01c.1 GeneID:2540695
KEGG:spo:SPBC19G7.01c OMA:HINERLD NextBio:20801818 GO:GO:0007534
Uniprot:O74773
Length = 982
Score = 195 (73.7 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 40/81 (49%), Positives = 54/81 (66%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+QV ++ +MAQ+GC VP +A+ + D I R+G +DS STF EM E
Sbjct: 724 MGGKSTYIRQVGVITVMAQIGCPVPCEVADLDIIDAILARVGASDSQLKGISTFMAEMLE 783
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I++ TPRSLI++DEL R
Sbjct: 784 TATILRAATPRSLIIIDELGR 804
>UNIPROTKB|P49849 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0030983
GO:GO:0008094 EMBL:U27343 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
GO:GO:0032300 KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 PIR:C69663
RefSeq:NP_389586.2 ProteinModelPortal:P49849 SMR:P49849
EnsemblBacteria:EBBACT00000003342 GeneID:939501 KEGG:bsu:BSU17040
PATRIC:18975215 GenoList:BSU17040 BioCyc:BSUB:BSU17040-MONOMER
Uniprot:P49849
Length = 858
Score = 194 (73.4 bits), Expect = 3.6e-14, P = 3.6e-14
Identities = 41/81 (50%), Positives = 53/81 (65%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
MSGKS Y++Q+AL+ IMAQ+GC+VPA A + D I+TRIG D + STF +EM E
Sbjct: 605 MSGKSTYMRQIALISIMAQIGCFVPAKKAVLPIFDQIFTRIGAADDLISGQSTFMVEMLE 664
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+ I T SLIL DE+ R
Sbjct: 665 AKNAIVNATKNSLILFDEIGR 685
>FB|FBgn0035169 [details] [associations]
symbol:CG13890 species:7227 "Drosophila melanogaster"
[GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0005811 "lipid
particle" evidence=IDA] InterPro:IPR001753 Pfam:PF00378
GO:GO:0003824 GO:GO:0005811 eggNOG:COG1024 EMBL:AY122107
ProteinModelPortal:Q8MR61 IntAct:Q8MR61 STRING:Q8MR61 PaxDb:Q8MR61
PRIDE:Q8MR61 FlyBase:FBgn0035169 InParanoid:Q8MR61
OrthoDB:EOG41894M ArrayExpress:Q8MR61 Bgee:Q8MR61 Uniprot:Q8MR61
Length = 265
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 39/92 (42%), Positives = 58/92 (63%)
Query: 123 FHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 182
F+TPFT G+ PEG SS + P I G S ASE+L L+AQEA Q+ FVS +F E+E
Sbjct: 137 FYTPFTKLGLVPEGGSSYMLPLILGRSKASEILLLSEPLSAQEAYQFNFVSRIFKASELE 196
Query: 183 RDLWPRIHAWAKLSSCIVSLLAHLMRGILRDG 214
+WP++ +++L + SLL + +++DG
Sbjct: 197 SVIWPKLRQYSELPTN--SLLQG--KRLVKDG 224
>UNIPROTKB|Q8F496 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:189518 "Leptospira interrogans serovar Lai str. 56601"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300 OMA:HYFELTV
EMBL:AE010300 GenomeReviews:AE010300_GR KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:NP_712327.1 ProteinModelPortal:Q8F496
PaxDb:Q8F496 GeneID:1151489 KEGG:lil:LA_2146 PATRIC:22385139
BioCyc:LINT189518:GJBB-1740-MONOMER Uniprot:Q8F496
Length = 848
Score = 192 (72.6 bits), Expect = 5.9e-14, P = 5.9e-14
Identities = 38/81 (46%), Positives = 56/81 (69%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS +++Q+AL QI+ Q+G +VPA A+ + D ++TRIG D++ STF +EMKE
Sbjct: 608 MAGKSTFMRQIALNQILFQIGAFVPAKSAKLPIVDKLFTRIGAGDNLTAGESTFFVEMKE 667
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A+I+ T SLIL DE+ R
Sbjct: 668 TANILNHYTEDSLILFDEVGR 688
>UNIPROTKB|Q8A334 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE015928 GenomeReviews:AE015928_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_812033.1
ProteinModelPortal:Q8A334 GeneID:1075929 KEGG:bth:BT_3121
PATRIC:21061245 BioCyc:BTHE226186:GJXV-3185-MONOMER Uniprot:Q8A334
Length = 862
Score = 192 (72.6 bits), Expect = 6.0e-14, P = 6.0e-14
Identities = 38/81 (46%), Positives = 55/81 (67%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS ++Q AL+ ++AQ+G +VPA A L D I+TR+G +D+I STF +EM E
Sbjct: 611 MAGKSALLRQTALITLLAQIGSFVPAESAHIGLVDKIFTRVGASDNISVGESTFMVEMNE 670
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I+ ++ RSL+L DEL R
Sbjct: 671 AADILNNVSSRSLVLFDELGR 691
>UNIPROTKB|A6V1G8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:381754 "Pseudomonas aeruginosa PA7" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
EMBL:CP000744 GenomeReviews:CP000744_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_001346903.1
ProteinModelPortal:A6V1G8 SMR:A6V1G8 STRING:A6V1G8 GeneID:5355863
KEGG:pap:PSPA7_1519 PATRIC:19824849
BioCyc:PAER381754:GHMY-1583-MONOMER Uniprot:A6V1G8
Length = 855
Score = 191 (72.3 bits), Expect = 7.6e-14, P = 7.6e-14
Identities = 37/81 (45%), Positives = 55/81 (67%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y++Q AL+ ++A +G +VPA+ E L D I+TRIG +D + STF +EM E
Sbjct: 616 MGGKSTYMRQTALIVLLAHIGSFVPAARCELSLVDRIFTRIGSSDDLAGGRSTFMVEMSE 675
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A+I+ T +SL+L+DE+ R
Sbjct: 676 TANILHNATDKSLVLMDEVGR 696
>UNIPROTKB|E1BYJ2 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00822608
Ensembl:ENSGALT00000039625 ArrayExpress:E1BYJ2 Uniprot:E1BYJ2
Length = 1341
Score = 193 (73.0 bits), Expect = 8.4e-14, P = 8.4e-14
Identities = 39/81 (48%), Positives = 52/81 (64%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS ++Q LL IMAQ+GCYVPA + D ++TR+G +D I STF +E+ E
Sbjct: 1118 MGGKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSE 1177
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+ I+Q T SL+LVDEL R
Sbjct: 1178 TSSILQHATEHSLVLVDELGR 1198
>UNIPROTKB|E1BWV7 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0000400 "four-way
junction DNA binding" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0032143 "single thymine insertion binding" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032405 "MutLalpha complex
binding" evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] [GO:0051096
"positive regulation of helicase activity" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0000287
GO:GO:0043531 GO:GO:0003682 GO:GO:0016887 GO:GO:0006298
GO:GO:0000790 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00571940
Ensembl:ENSGALT00000014567 ArrayExpress:E1BWV7 Uniprot:E1BWV7
Length = 1357
Score = 193 (73.0 bits), Expect = 8.6e-14, P = 8.6e-14
Identities = 39/81 (48%), Positives = 52/81 (64%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS ++Q LL IMAQ+GCYVPA + D ++TR+G +D I STF +E+ E
Sbjct: 1134 MGGKSTLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSE 1193
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+ I+Q T SL+LVDEL R
Sbjct: 1194 TSSILQHATEHSLVLVDELGR 1214
>MGI|MGI:1343961 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IGI;IMP] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=IGI;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IMP] [GO:0009411
"response to UV" evidence=IMP] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=ISO;IDA] [GO:0043570 "maintenance of
DNA repeat elements" evidence=IBA] [GO:0045190 "isotype switching"
evidence=IMP] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO;IMP] [GO:0051096 "positive regulation
of helicase activity" evidence=ISO] [GO:0097193 "intrinsic
apoptotic signaling pathway" evidence=IMP] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 MGI:MGI:1343961 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0003684 GO:GO:0043531 GO:GO:0003682
GO:GO:0000790 GO:GO:0045190 GO:GO:0007131 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0043570 GO:GO:0045910 SMART:SM00293
GO:GO:0008094 GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 HOGENOM:HOG000243127
KO:K08737 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 CTD:2956
GeneTree:ENSGT00550000075024 HOVERGEN:HBG000101 OrthoDB:EOG4CG07F
EMBL:U42190 EMBL:AF031087 EMBL:AF031085 EMBL:AF031086 EMBL:BC051160
EMBL:BC051634 EMBL:U61388 EMBL:U61389 IPI:IPI00323790
RefSeq:NP_034960.1 UniGene:Mm.18210 ProteinModelPortal:P54276
SMR:P54276 IntAct:P54276 STRING:P54276 PhosphoSite:P54276
PaxDb:P54276 PRIDE:P54276 Ensembl:ENSMUST00000005503 GeneID:17688
KEGG:mmu:17688 InParanoid:Q6GTK8 ChiTaRS:MSH6 NextBio:292264
Bgee:P54276 CleanEx:MM_MSH6 Genevestigator:P54276
GermOnline:ENSMUSG00000005370 Uniprot:P54276
Length = 1358
Score = 193 (73.0 bits), Expect = 8.6e-14, P = 8.6e-14
Identities = 39/81 (48%), Positives = 51/81 (62%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS I+Q LL +MAQ+GCYVPA D ++TR+G +D I STF +E+ E
Sbjct: 1135 MGGKSTLIRQAGLLAVMAQLGCYVPAEKCRLTPVDRVFTRLGASDRIMSGESTFFVELSE 1194
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I++ T SL+LVDEL R
Sbjct: 1195 TASILRHATAHSLVLVDELGR 1215
>UNIPROTKB|F5H2F9 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0003682
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 GO:GO:0045910
GO:GO:0016446 EMBL:AC006509 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 HGNC:HGNC:7329 IPI:IPI01013073
ProteinModelPortal:F5H2F9 SMR:F5H2F9 Ensembl:ENST00000538136
ArrayExpress:F5H2F9 Bgee:F5H2F9 Uniprot:F5H2F9
Length = 1058
Score = 191 (72.3 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 38/81 (46%), Positives = 51/81 (62%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS ++Q LL +MAQ+GCYVPA + D ++TR+G +D I STF +E+ E
Sbjct: 835 MGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSE 894
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I+ T SL+LVDEL R
Sbjct: 895 TASILMHATAHSLVLVDELGR 915
>MGI|MGI:109519 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003677 "DNA binding" evidence=IGI] [GO:0003684
"damaged DNA binding" evidence=IGI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0019237 "centromeric DNA binding" evidence=IDA] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=ISO;IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=ISO;IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 MGI:MGI:109519 GO:GO:0005524 GO:GO:0003684
GO:GO:0019237 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 KO:K08736
CTD:4437 HOVERGEN:HBG006400 OrthoDB:EOG434W57 GO:GO:0016447
EMBL:M80360 EMBL:L10319 EMBL:L10295 EMBL:L10296 EMBL:L10297
EMBL:L10298 EMBL:L10299 EMBL:L10300 EMBL:L10301 EMBL:L10304
EMBL:L10305 EMBL:L10306 EMBL:L10307 EMBL:L10308 EMBL:L10309
EMBL:L10310 EMBL:L10311 EMBL:L10312 EMBL:L10313 EMBL:L10314
EMBL:L10315 EMBL:L10316 EMBL:L10317 EMBL:L10318 EMBL:M24919
IPI:IPI00896729 PIR:A32495 RefSeq:NP_034959.2 UniGene:Mm.343101
ProteinModelPortal:P13705 SMR:P13705 STRING:P13705
PhosphoSite:P13705 PaxDb:P13705 PRIDE:P13705 GeneID:17686
KEGG:mmu:17686 InParanoid:P13705 ChiTaRS:MSH3 NextBio:292256
CleanEx:MM_MSH3 Genevestigator:P13705 GermOnline:ENSMUSG00000014850
Uniprot:P13705
Length = 1091
Score = 191 (72.3 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 46/123 (37%), Positives = 69/123 (56%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YIKQV L+ IMAQ+G YVPA A + D I+TR+G D+I STF ++ +
Sbjct: 853 MGGKSSYIKQVTLVTIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEQLTD 912
Query: 61 IAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFVLQ 120
A II+ +P+SL+++DEL R + L+++ R + + V PV L+
Sbjct: 913 TAEIIRRASPQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELE 972
Query: 121 ATF 123
+
Sbjct: 973 KCY 975
>CGD|CAL0005874 [details] [associations]
symbol:orf19.496 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032139 "dinucleotide insertion or
deletion binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0043504 "mitochondrial DNA repair" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0005874 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 HOGENOM:HOG000157750 SUPFAM:SSF53150
RefSeq:XP_717359.1 RefSeq:XP_717448.1 STRING:Q5A6Q9 GeneID:3640907
GeneID:3640972 KEGG:cal:CaO19.496 KEGG:cal:CaO19.8126
Uniprot:Q5A6Q9
Length = 923
Score = 190 (71.9 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 39/81 (48%), Positives = 55/81 (67%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y++Q AL+ I+AQ+G +VPA A L D I+TRIG D + + STF +EM E
Sbjct: 736 MGGKSTYLRQNALIVILAQIGSFVPAEKATIGLVDKIFTRIGATDDLFNDLSTFMVEMVE 795
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+++I+ TP SL +VDE+ R
Sbjct: 796 VSNILTNATPSSLAIVDEIGR 816
>TIGR_CMR|NSE_0335 [details] [associations]
symbol:NSE_0335 "DNA mismatch repair protein MutS"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_506224.1 STRING:Q2GE72
GeneID:3931998 KEGG:nse:NSE_0335 PATRIC:22680759
ProtClustDB:CLSK2528033 BioCyc:NSEN222891:GHFU-360-MONOMER
Uniprot:Q2GE72
Length = 815
Score = 189 (71.6 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 37/81 (45%), Positives = 57/81 (70%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS Y++Q AL+ I+AQ+G +VPA A + D +++RIG +D+I STF +EM E
Sbjct: 619 MAGKSTYLRQNALITILAQMGSFVPADSAHIGVVDRVFSRIGASDNIAMGKSTFMVEMME 678
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A+I+ T RSL+++DE+ R
Sbjct: 679 TANIVNNATCRSLVILDEVGR 699
>CGD|CAL0006305 [details] [associations]
symbol:MSH6 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032138 "single base
insertion or deletion binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0006305 GO:GO:0005524 GO:GO:0006298
EMBL:AACQ01000010 EMBL:AACQ01000009 GO:GO:0030983 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
PIRSF:PIRSF037677 RefSeq:XP_722156.1 RefSeq:XP_722270.1
ProteinModelPortal:Q5AL33 STRING:Q5AL33 GeneID:3636059
GeneID:3636161 KEGG:cal:CaO19.12411 KEGG:cal:CaO19.4945
Uniprot:Q5AL33
Length = 1214
Score = 191 (72.3 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 41/99 (41%), Positives = 57/99 (57%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
+GKS ++ AL I++Q+GCY+PA AE D I TR+G ND+I STF +E+ E
Sbjct: 971 AGKSTLMRTTALAIILSQIGCYIPAESAELTPVDRIMTRLGANDNILQGKSTFFVELSET 1030
Query: 62 AHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYA 100
I+ TPRSL+++DEL R G + L H A
Sbjct: 1031 KKILSNATPRSLVILDELGRGGSSSDGFAIAESVLHHLA 1069
>UNIPROTKB|B4DF41 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
EMBL:AC006509 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 UniGene:Hs.445052 HGNC:HGNC:7329
HOVERGEN:HBG000101 EMBL:AK293921 IPI:IPI01014931 SMR:B4DF41
STRING:B4DF41 Ensembl:ENST00000540021 Uniprot:B4DF41
Length = 1230
Score = 191 (72.3 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 38/81 (46%), Positives = 51/81 (62%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS ++Q LL +MAQ+GCYVPA + D ++TR+G +D I STF +E+ E
Sbjct: 1007 MGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSE 1066
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I+ T SL+LVDEL R
Sbjct: 1067 TASILMHATAHSLVLVDELGR 1087
>CGD|CAL0000288 [details] [associations]
symbol:orf19.3608 species:5476 "Candida albicans" [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000735 "removal of nonhomologous ends"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032135 "DNA insertion or deletion binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0000403 "Y-form DNA binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0005634 GO:GO:0006298 GO:GO:0030983
EMBL:AACQ01000103 EMBL:AACQ01000102 eggNOG:COG0249 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HSSP:P23909 KO:K08736
RefSeq:XP_714452.1 RefSeq:XP_714501.1 ProteinModelPortal:Q59Y41
STRING:Q59Y41 GeneID:3643846 GeneID:3643889 KEGG:cal:CaO19.11091
KEGG:cal:CaO19.3608 Uniprot:Q59Y41
Length = 1037
Score = 190 (71.9 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 38/81 (46%), Positives = 54/81 (66%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y+K VALL +M Q+GCY+P A + D I+ R+G ND+I STF +EM +
Sbjct: 803 MGGKSSYVKTVALLTVMTQIGCYLPCQNATMGIFDSIFIRMGANDNILKGYSTFMMEMLQ 862
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+II ++ RSLI++DE+ R
Sbjct: 863 CKNIISMMSNRSLIILDEIGR 883
>UNIPROTKB|E1B9Q4 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0045190 "isotype switching"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0032405
"MutLalpha complex binding" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0000400 "four-way junction DNA
binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0043531 GO:GO:0003682 GO:GO:0016887
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0045910 SMART:SM00293 GO:GO:0016446
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 CTD:2956 GeneTree:ENSGT00550000075024
EMBL:DAAA02030744 IPI:IPI00714742 RefSeq:NP_001179666.1
UniGene:Bt.98842 Ensembl:ENSBTAT00000001867 GeneID:540526
KEGG:bta:540526 NextBio:20878683 Uniprot:E1B9Q4
Length = 1360
Score = 191 (72.3 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 39/81 (48%), Positives = 51/81 (62%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS ++Q LL IMAQ+GCYVPA + D ++TR+G +D I STF +E+ E
Sbjct: 1137 MGGKSTLMRQAGLLAIMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSE 1196
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I+ T SL+LVDEL R
Sbjct: 1197 TASILTHATAHSLVLVDELGR 1217
>UNIPROTKB|P52701 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=ISS;IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISS;IBA] [GO:0009411 "response to
UV" evidence=ISS;IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=ISS;IBA] [GO:0045190 "isotype
switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0032405 "MutLalpha complex binding" evidence=IDA]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IDA;IMP] [GO:0032301
"MutSalpha complex" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032142 "single guanine insertion
binding" evidence=IDA] [GO:0032143 "single thymine insertion
binding" evidence=IDA] [GO:0032357 "oxidized purine DNA binding"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=ISS] [GO:0008340
"determination of adult lifespan" evidence=ISS] [GO:0016447
"somatic recombination of immunoglobulin gene segments"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0045910
"negative regulation of DNA recombination" evidence=IDA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0003684 GO:GO:0003682 GO:GO:0000790 GO:GO:0045190 MIM:276300
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0045910 Orphanet:144 SMART:SM00293 MIM:608089 GO:GO:0008094
GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0051096 PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F
PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E PDBsum:2O8F
HOGENOM:HOG000243127 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
CTD:2956 EMBL:U73737 EMBL:U73732 EMBL:U73733 EMBL:U73734
EMBL:U73736 EMBL:D89645 EMBL:D89646 EMBL:AY082894 EMBL:BC004246
EMBL:U54777 EMBL:U28946 IPI:IPI00106847 IPI:IPI00384456 PIR:JC5839
RefSeq:NP_000170.1 UniGene:Hs.445052 PDB:2GFU PDBsum:2GFU
ProteinModelPortal:P52701 SMR:P52701 DIP:DIP-32972N IntAct:P52701
MINT:MINT-131993 STRING:P52701 PhosphoSite:P52701 DMDM:68067672
PaxDb:P52701 PeptideAtlas:P52701 PRIDE:P52701 DNASU:2956
Ensembl:ENST00000234420 GeneID:2956 KEGG:hsa:2956 UCSC:uc002rwc.2
UCSC:uc002rwd.4 GeneCards:GC02P048010 HGNC:HGNC:7329 HPA:CAB009091
HPA:HPA028376 HPA:HPA028446 MIM:600678 MIM:614350
neXtProt:NX_P52701 PharmGKB:PA184 HOVERGEN:HBG000101
InParanoid:P52701 OrthoDB:EOG4CG07F PhylomeDB:P52701
EvolutionaryTrace:P52701 GenomeRNAi:2956 NextBio:11716
PMAP-CutDB:P52701 ArrayExpress:P52701 Bgee:P52701 CleanEx:HS_MSH6
Genevestigator:P52701 GermOnline:ENSG00000116062 Uniprot:P52701
Length = 1360
Score = 191 (72.3 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 38/81 (46%), Positives = 51/81 (62%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS ++Q LL +MAQ+GCYVPA + D ++TR+G +D I STF +E+ E
Sbjct: 1137 MGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSE 1196
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I+ T SL+LVDEL R
Sbjct: 1197 TASILMHATAHSLVLVDELGR 1217
>TIGR_CMR|CHY_1397 [details] [associations]
symbol:CHY_1397 "DNA mismatch repair protein HexA"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006298 GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
OMA:HYFELTV KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_360229.1 ProteinModelPortal:Q3ACA5
STRING:Q3ACA5 GeneID:3728668 KEGG:chy:CHY_1397 PATRIC:21275925
BioCyc:CHYD246194:GJCN-1396-MONOMER Uniprot:Q3ACA5
Length = 841
Score = 188 (71.2 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 46/113 (40%), Positives = 66/113 (58%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS Y++Q AL+ I+AQ+G +VPA A L D I TRIG D + STF +EM E
Sbjct: 603 MAGKSTYMRQAALIVILAQIGSFVPAEYARVGLVDKILTRIGATDDLAKGQSTFMVEMIE 662
Query: 61 IAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLN 113
+I++ T RSLIL+DE+ R G E + Y + +++K R L +
Sbjct: 663 CNNILRNATSRSLILLDEVGR-GTSTYDGISIAEAIIEYIQ--KKIKARTLFS 712
>UNIPROTKB|F1PM27 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 Pfam:PF00855 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812
SMART:SM00293 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000004197 Uniprot:F1PM27
Length = 1263
Score = 190 (71.9 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 38/81 (46%), Positives = 51/81 (62%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS ++Q LL +MAQ+GCYVPA + D ++TR+G +D I STF +E+ E
Sbjct: 1066 MGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSE 1125
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I+ T SL+LVDEL R
Sbjct: 1126 TASILTHATAHSLVLVDELGR 1146
>UNIPROTKB|J9P5H1 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 SMART:SM00533 SMART:SM00534
Pfam:PF00855 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000043509 Uniprot:J9P5H1
Length = 1279
Score = 190 (71.9 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 38/83 (45%), Positives = 51/83 (61%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS ++Q LL +MAQ+GCYVPA + D ++TR+G +D I STF +E+ E
Sbjct: 1056 MGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSE 1115
Query: 61 IAHIIQFLTPRSLILVDELCRAG 83
A I+ T SL+LVDEL G
Sbjct: 1116 TASILTHATAHSLVLVDELVGRG 1138
>UNIPROTKB|I3LHZ9 [details] [associations]
symbol:LOC100739477 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:FP476043
Ensembl:ENSSSCT00000028757 Uniprot:I3LHZ9
Length = 1334
Score = 190 (71.9 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 38/81 (46%), Positives = 51/81 (62%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS ++Q LL +MAQ+GCYVPA + D ++TR+G +D I STF +E+ E
Sbjct: 1113 MGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSE 1172
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I+ T SL+LVDEL R
Sbjct: 1173 TASILTHATAHSLVLVDELGR 1193
>UNIPROTKB|Q7SD11 [details] [associations]
symbol:msh-3 "DNA mismatch repair protein msh-3"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0008094
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 GO:GO:0000735 HOGENOM:HOG000029776 KO:K08736
OMA:KRTKSIY OrthoDB:EOG42NN7M EMBL:AABX02000089 RefSeq:XP_963874.1
ProteinModelPortal:Q7SD11 STRING:Q7SD11
EnsemblFungi:EFNCRT00000009637 GeneID:3880023 KEGG:ncr:NCU08115
Uniprot:Q7SD11
Length = 1145
Score = 189 (71.6 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 41/101 (40%), Positives = 62/101 (61%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y + VALL ++AQ+G +VPA+ L+D I+TR+G D++ STF +E+ E
Sbjct: 885 MGGKSSYTRAVALLVLLAQIGSFVPATSMSLTLSDAIFTRMGARDNLFKGESTFMVEVSE 944
Query: 61 IAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYAR 101
A I++ TPRSL+++DEL R + G L++ R
Sbjct: 945 TAAILRQATPRSLVVLDELGRGTSTHDGRAIAGAVLEYVVR 985
>SGD|S000000688 [details] [associations]
symbol:MSH3 "Mismatch repair protein" species:4932
"Saccharomyces cerevisiae" [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IEA;IDA] [GO:0000735 "removal of
nonhomologous ends" evidence=IGI;IMP;TAS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0032135 "DNA insertion or deletion
binding" evidence=IDA] [GO:0006310 "DNA recombination"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000000688 GO:GO:0005524 GO:GO:0005737
GO:GO:0003684 EMBL:X59720 EMBL:BK006937 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032135 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M EMBL:X64954 EMBL:M96250
PIR:S19508 RefSeq:NP_010016.2 ProteinModelPortal:P25336 SMR:P25336
DIP:DIP-2422N IntAct:P25336 MINT:MINT-633647 STRING:P25336
PaxDb:P25336 PeptideAtlas:P25336 PRIDE:P25336 EnsemblFungi:YCR092C
GeneID:850454 KEGG:sce:YCR092C CYGD:YCR092c
GeneTree:ENSGT00550000074949 NextBio:966078 Genevestigator:P25336
GermOnline:YCR092C Uniprot:P25336
Length = 1018
Score = 188 (71.2 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 40/81 (49%), Positives = 55/81 (67%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+QVALL IMAQ+G +VPA + +++ TRIG +D I STF +EM +
Sbjct: 794 MGGKSSYIRQVALLTIMAQIGSFVPAEEIRLSIFENVLTRIGAHDDIINGDSTFKVEMLD 853
Query: 61 IAHIIQFLTPRSLILVDELCR 81
I HI++ RSL+L+DE+ R
Sbjct: 854 ILHILKNCNKRSLLLLDEVGR 874
>TIGR_CMR|VC_0535 [details] [associations]
symbol:VC_0535 "DNA mismatch repair protein MutS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD PIR:B82312 RefSeq:NP_230186.1 ProteinModelPortal:Q9KUI6
SMR:Q9KUI6 DNASU:2615204 GeneID:2615204 KEGG:vch:VC0535
PATRIC:20080174 Uniprot:Q9KUI6
Length = 862
Score = 187 (70.9 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 38/81 (46%), Positives = 52/81 (64%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y++Q AL+ +MA +G YVPA A D I+TRIG +D + STF +EM E
Sbjct: 624 MGGKSTYMRQTALIALMAHIGSYVPAESASIGPLDRIFTRIGASDDLASGRSTFMVEMTE 683
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A+I+ T SL+L+DE+ R
Sbjct: 684 TANILHNATRNSLVLMDEIGR 704
>SGD|S000001891 [details] [associations]
symbol:MSH4 "Protein involved in meiotic recombination"
species:4932 "Saccharomyces cerevisiae" [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA;IPI]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983 "mismatched
DNA binding" evidence=IEA;IBA] [GO:0051026 "chiasma assembly"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IRD]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0045143 "homologous chromosome
segregation" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001891 GO:GO:0005524 EMBL:D50617
EMBL:BK006940 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 GeneTree:ENSGT00550000074897 KO:K08740
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:U13999
PIR:A55201 RefSeq:NP_116652.1 ProteinModelPortal:P40965 SMR:P40965
DIP:DIP-2426N IntAct:P40965 MINT:MINT-565232 STRING:P40965
EnsemblFungi:YFL003C GeneID:850545 KEGG:sce:YFL003C
HOGENOM:HOG000094365 OMA:MSGKSVY OrthoDB:EOG4VHPFT NextBio:966313
Genevestigator:P40965 GermOnline:YFL003C Uniprot:P40965
Length = 878
Score = 187 (70.9 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 42/106 (39%), Positives = 62/106 (58%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
MSGKSVY+KQVAL+ IMAQ+G +PA F + ++ R+ NDS+E +S F EMKE
Sbjct: 637 MSGKSVYLKQVALICIMAQMGSGIPALYGSFPVFKRLHARV-CNDSMELTSSNFGFEMKE 695
Query: 61 IAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQV 106
+A+ + + +L+++DEL R C+ +H RT V
Sbjct: 696 MAYFLDDINTETLLILDELGRGSSIADGFCVSLAVTEHLLRTEATV 741
>TIGR_CMR|BA_3905 [details] [associations]
symbol:BA_3905 "DNA mismatch repair protein MutS"
species:198094 "Bacillus anthracis str. Ames" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006298
GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_846152.1
RefSeq:YP_020544.1 RefSeq:YP_029871.1 ProteinModelPortal:Q81WR3
DNASU:1087964 EnsemblBacteria:EBBACT00000010607
EnsemblBacteria:EBBACT00000017303 EnsemblBacteria:EBBACT00000020116
GeneID:1087964 GeneID:2814777 GeneID:2848878 KEGG:ban:BA_3905
KEGG:bar:GBAA_3905 KEGG:bat:BAS3618
BioCyc:BANT260799:GJAJ-3677-MONOMER
BioCyc:BANT261594:GJ7F-3794-MONOMER Uniprot:Q81WR3
Length = 892
Score = 187 (70.9 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 39/81 (48%), Positives = 55/81 (67%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
MSGKS Y++Q+AL+ +M+Q+GC+VPA+ A + D I+TRIG D + STF +EM E
Sbjct: 610 MSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLE 669
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+ I + RSLIL DE+ R
Sbjct: 670 AKNAIANASERSLILFDEIGR 690
>DICTYBASE|DDB_G0275809 [details] [associations]
symbol:msh2 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0032302 "MutSbeta complex"
evidence=IEA;ISS;IBA] [GO:0032301 "MutSalpha complex"
evidence=IEA;ISS;IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0042803 "protein
homodimerization activity" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0006301 "postreplication repair"
evidence=ISS;IBA] [GO:0006281 "DNA repair" evidence=IEA;ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0045128
"negative regulation of reciprocal meiotic recombination"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF05188 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 dictyBase:DDB_G0275809 GO:GO:0005524 GO:GO:0042803
GO:GO:0003684 GenomeReviews:CM000151_GR EMBL:AAFI02000013
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 KO:K08735 OMA:WAISEHI
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 RefSeq:XP_643399.1
HSSP:P23909 ProteinModelPortal:Q553L4 STRING:Q553L4 PRIDE:Q553L4
EnsemblProtists:DDB0229897 GeneID:8619985 KEGG:ddi:DDB_G0275809
ProtClustDB:CLSZ2430933 Uniprot:Q553L4
Length = 937
Score = 186 (70.5 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 38/81 (46%), Positives = 53/81 (65%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS +I+QV L+ +MAQ+GC+VPA A + D I +R+G DS STF EM E
Sbjct: 710 MGGKSTFIRQVGLIVLMAQIGCFVPAQKATIAVVDCILSRVGAGDSQLRGVSTFMAEMLE 769
Query: 61 IAHIIQFLTPRSLILVDELCR 81
++I++ T SLI++DEL R
Sbjct: 770 TSYILKVATKNSLIIIDELGR 790
>UNIPROTKB|Q5VR41 [details] [associations]
symbol:OJ1174_D05.15 "Os01g0180600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 EMBL:AP008207 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR015536 PANTHER:PTHR11361:SF31
HOGENOM:HOG000030287 ProtClustDB:CLSN2680110 EMBL:AP003047
EMBL:AP003118 RefSeq:NP_001042208.1 UniGene:Os.74356 STRING:Q5VR41
EnsemblPlants:LOC_Os01g08540.1 GeneID:4325353 KEGG:osa:4325353
OMA:KFYELYD Uniprot:Q5VR41
Length = 1224
Score = 187 (70.9 bits), Expect = 3.3e-13, P = 3.3e-13
Identities = 65/196 (33%), Positives = 90/196 (45%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS ++ L ++AQ+GCYVP E LAD I+TRIG D I STF +E E
Sbjct: 975 MGGKSTIMRATCLAIVLAQLGCYVPCQSCELTLADAIFTRIGAMDRIMSGESTFLVECTE 1034
Query: 61 IAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDH--YARTTEQVKNRVLLN---HP 115
A I++ T SL+L+DEL R S G + + + E V+ R+L HP
Sbjct: 1035 TASILENATEDSLVLLDELGRG-----TSTFDGYAIAYAVFRHLVEAVRCRLLFATHYHP 1089
Query: 116 VFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGV 175
+ + H TL+ M C +L PR G+ EL + R + YG V
Sbjct: 1090 L-TKEFASHPHVTLQHMA---C--MLKPRNGGDGGEKELTFLYRLTSGACPESYGLQ--V 1141
Query: 176 FTTEEIERDLWPRIHA 191
T + R + R A
Sbjct: 1142 ATMAGLPRSIVERASA 1157
>UNIPROTKB|H0YF11 [details] [associations]
symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD1" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
EMBL:AL662899 EMBL:CR759787 GO:GO:0006298 GO:GO:0030983
EMBL:AL662834 EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR759915
EMBL:CR925765 EMBL:BX248133 HGNC:HGNC:41994 Ensembl:ENST00000469011
Ensembl:ENST00000476578 Ensembl:ENST00000480622
Ensembl:ENST00000482009 Ensembl:ENST00000492776
Ensembl:ENST00000498473 Uniprot:H0YF11
Length = 264
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
SGKS+Y+KQV L+ MA VG +VPA AE D I+TRI +SI STF +++ ++
Sbjct: 121 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 180
Query: 62 AHIIQFLTPRSLILVDE 78
A + T +SL+L+DE
Sbjct: 181 AKAVNNATAQSLVLIDE 197
>UNIPROTKB|Q9UFG2 [details] [associations]
symbol:DKFZp434C1615 "Putative uncharacterized protein
DKFZp434C1615" species:9606 "Homo sapiens" [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 EMBL:BX248244 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 HSSP:Q56215 UniGene:Hs.647011
HGNC:HGNC:7328 ChiTaRS:MSH5 EMBL:BX248133 EMBL:AL122094
IPI:IPI00945579 PIR:T34526 STRING:Q9UFG2 Ensembl:ENST00000554793
HOVERGEN:HBG066397 Uniprot:Q9UFG2
Length = 263
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
SGKS+Y+KQV L+ MA VG +VPA AE D I+TRI +SI STF +++ ++
Sbjct: 120 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 179
Query: 62 AHIIQFLTPRSLILVDE 78
A + T +SL+L+DE
Sbjct: 180 AKAVNNATAQSLVLIDE 196
>UNIPROTKB|E9PGY4 [details] [associations]
symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD1" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR925765 HGNC:HGNC:7328
HGNC:HGNC:41994 IPI:IPI00790547 SMR:E9PGY4 Ensembl:ENST00000548094
Ensembl:ENST00000549604 Ensembl:ENST00000549746 Uniprot:E9PGY4
Length = 271
Score = 173 (66.0 bits), Expect = 3.7e-13, P = 3.7e-13
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
SGKS+Y+KQV L+ MA VG +VPA AE D I+TRI +SI STF +++ ++
Sbjct: 128 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 187
Query: 62 AHIIQFLTPRSLILVDE 78
A + T +SL+L+DE
Sbjct: 188 AKAVNNATAQSLVLIDE 204
>UNIPROTKB|F1N8B7 [details] [associations]
symbol:F1N8B7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0000795 "synaptonemal complex"
evidence=IEA] [GO:0007129 "synapsis" evidence=IEA] [GO:0007292
"female gamete generation" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007129
GO:GO:0000795 SUPFAM:SSF48334 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 EMBL:AADN02049793 IPI:IPI00814446
Ensembl:ENSGALT00000004315 Uniprot:F1N8B7
Length = 791
Score = 184 (69.8 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 36/77 (46%), Positives = 51/77 (66%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
SGKS+Y+KQV L+ MA +G YVPA+ AE D IYTRI +S+ STF +++ ++
Sbjct: 553 SGKSIYLKQVGLIIFMALIGSYVPAAEAEIGAIDGIYTRIHTRESVSVGLSTFMIDLNQV 612
Query: 62 AHIIQFLTPRSLILVDE 78
A + T RSL+L+DE
Sbjct: 613 AKAVNNATERSLVLIDE 629
>UNIPROTKB|F1SQH4 [details] [associations]
symbol:LOC100739713 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
SUPFAM:SSF48334 GeneTree:ENSGT00550000074867 EMBL:CU928288
RefSeq:XP_003481267.1 Ensembl:ENSSSCT00000009231 GeneID:100739713
KEGG:ssc:100739713 ArrayExpress:F1SQH4 Uniprot:F1SQH4
Length = 450
Score = 180 (68.4 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 38/81 (46%), Positives = 50/81 (61%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+Q ++ +MAQ+GC+VP AE + D I R+G DS STF EM E
Sbjct: 188 MGGKSTYIRQTGVVVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLE 247
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I++ T SLI++DEL R
Sbjct: 248 TASILRSATKDSLIIIDELGR 268
>DICTYBASE|DDB_G0281683 [details] [associations]
symbol:msh3 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032302 "MutSbeta
complex" evidence=ISS;IBA] [GO:0032135 "DNA insertion or deletion
binding" evidence=ISS] [GO:0006312 "mitotic recombination"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0000735 "removal of nonhomologous ends" evidence=ISS]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0281683 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0003684 EMBL:AAFI02000042
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 RefSeq:XP_001134558.1
STRING:Q1ZXH0 EnsemblProtists:DDB0232960 GeneID:8623184
KEGG:ddi:DDB_G0281683 OMA:ATRISHI Uniprot:Q1ZXH0
Length = 1428
Score = 187 (70.9 bits), Expect = 4.0e-13, P = 4.0e-13
Identities = 38/81 (46%), Positives = 55/81 (67%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS ++Q AL+ IMAQVGC+VPA+ + D IYTR+G DSI STF +E++E
Sbjct: 1182 MGGKSSLLRQTALIVIMAQVGCFVPATSCSLSVFDAIYTRMGARDSIGTGKSTFFIELEE 1241
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+ I++ T +L+++DEL R
Sbjct: 1242 TSDILKNSTQNTLVILDELGR 1262
>UNIPROTKB|P74926 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243274 "Thermotoga maritima MSB8" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE000512 GenomeReviews:AE000512_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 EMBL:U71155 PIR:C72219 RefSeq:NP_229518.1
ProteinModelPortal:P74926 GeneID:897879 KEGG:tma:TM1719
PATRIC:23938414 Uniprot:P74926
Length = 793
Score = 183 (69.5 bits), Expect = 4.9e-13, P = 4.9e-13
Identities = 38/81 (46%), Positives = 55/81 (67%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
MSGKS +I+QV L+ +MAQ+G +VPA A + D I+TR+G D + STF +EM E
Sbjct: 592 MSGKSTFIRQVGLISLMAQIGSFVPAQKAILPVFDRIFTRMGARDDLAGGRSTFLVEMNE 651
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+A I+ T +SL+L+DE+ R
Sbjct: 652 MALILLKSTNKSLVLLDEVGR 672
>UNIPROTKB|Q752H0 [details] [associations]
symbol:AFR603C "AFR603Cp" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000735 "removal of nonhomologous ends"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0006311
"meiotic gene conversion" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
EMBL:AE016819 GenomeReviews:AE016819_GR SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 OrthoDB:EOG4S7NZ5
GO:GO:0000735 RefSeq:NP_986150.1 ProteinModelPortal:Q752H0
STRING:Q752H0 EnsemblFungi:AAS53974 GeneID:4622435
KEGG:ago:AGOS_AFR603C PhylomeDB:Q752H0 Uniprot:Q752H0
Length = 956
Score = 184 (69.8 bits), Expect = 5.0e-13, P = 5.0e-13
Identities = 38/81 (46%), Positives = 51/81 (62%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+QV ++ ++AQ+GC+VP AE + D I R+G DS STF EM E
Sbjct: 686 MGGKSTYIRQVGVICLLAQIGCFVPCDAAEITIVDAILCRVGAGDSQLKGVSTFMAEMLE 745
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I++ T SLI++DEL R
Sbjct: 746 TASILRNATKNSLIIIDELGR 766
>UNIPROTKB|Q5BDA1 [details] [associations]
symbol:AN1479.2 "DNA-binding protein of the mitochondria
(Eurofung)" species:227321 "Aspergillus nidulans FGSC A4"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0005739
"mitochondrion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032139 "dinucleotide insertion or
deletion binding" evidence=IBA] [GO:0032300 "mismatch repair
complex" evidence=IBA] [GO:0043504 "mitochondrial DNA repair"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IRD]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0007131 "reciprocal meiotic
recombination" evidence=IRD] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IRD] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005739 GO:GO:0005524
GO:GO:0003684 EMBL:BN001307 GO:GO:0006298 GO:GO:0008094
EMBL:AACD01000022 GO:GO:0043504 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150
GO:GO:0032300 GO:GO:0032139 RefSeq:XP_659083.1 STRING:Q5BDA1
EnsemblFungi:CADANIAT00008100 GeneID:2875263 KEGG:ani:AN1479.2
OMA:RVGGFYE Uniprot:Q5BDA1
Length = 924
Score = 183 (69.5 bits), Expect = 6.1e-13, P = 6.1e-13
Identities = 39/86 (45%), Positives = 58/86 (67%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS +++Q AL+ I+AQVG +VPA AE + D I++RIG D + + STF +EM E
Sbjct: 728 MAGKSTFLRQNALITILAQVGSFVPADYAEIGIVDQIFSRIGAADDLFRDQSTFMVEMLE 787
Query: 61 IAHIIQFLTPRSLILVDELCRAGIEP 86
A I++ T RS +++DE+ R G P
Sbjct: 788 TAAILKQATARSFVIMDEVGR-GTTP 812
>ZFIN|ZDB-GENE-060526-307 [details] [associations]
symbol:msh3 "mutS homolog 3 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-060526-307 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GeneTree:ENSGT00550000074949
EMBL:CR381619 IPI:IPI00805026 Ensembl:ENSDART00000092285
Uniprot:F1QCN5
Length = 950
Score = 183 (69.5 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 39/81 (48%), Positives = 54/81 (66%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+QVAL+ IMAQ+G +VPA A + D IY R+G +D+I STF E+ E
Sbjct: 855 MGGKSSYIRQVALVTIMAQLGSFVPAREASVGIVDGIYVRMGASDNISRGRSTFMEELLE 914
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+ ++ T RSL+++DEL R
Sbjct: 915 TSDVLACATSRSLVILDELGR 935
>UNIPROTKB|F1SQH6 [details] [associations]
symbol:LOC100739713 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074867 EMBL:CU928288 EMBL:FP102206
EMBL:FP476038 Ensembl:ENSSSCT00000009229 OMA:KGACDQS
ArrayExpress:F1SQH6 Uniprot:F1SQH6
Length = 584
Score = 180 (68.4 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 38/81 (46%), Positives = 50/81 (61%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+Q ++ +MAQ+GC+VP AE + D I R+G DS STF EM E
Sbjct: 322 MGGKSTYIRQTGVVVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLE 381
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I++ T SLI++DEL R
Sbjct: 382 TASILRSATKDSLIIIDELGR 402
>SGD|S000005450 [details] [associations]
symbol:MSH2 "Protein that forms heterodimers with Msh3p and
Msh6p that bind to DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA;IDA] [GO:0006298 "mismatch
repair" evidence=IEA;IMP] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IPI]
[GO:0032302 "MutSbeta complex" evidence=IEA;IPI] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0000735 "removal of nonhomologous ends"
evidence=IGI;IMP] [GO:0000710 "meiotic mismatch repair"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IGI] [GO:0006311 "meiotic gene conversion" evidence=IMP]
[GO:0032135 "DNA insertion or deletion binding" evidence=IDA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IMP;IDA] [GO:0006310 "DNA recombination" evidence=IMP]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
SGD:S000005450 GO:GO:0005524 EMBL:BK006948 GO:GO:0003684
GO:GO:0030466 EMBL:X83121 GO:GO:0030983 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0006301 GO:GO:0008094 GO:GO:0036297
GO:GO:0006311 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0000710 GO:GO:0032301 HOGENOM:HOG000196498
KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GeneTree:ENSGT00550000074867 OrthoDB:EOG4S7NZ5 GO:GO:0000735
EMBL:M84170 EMBL:Z74832 PIR:S57379 RefSeq:NP_014551.1
ProteinModelPortal:P25847 SMR:P25847 DIP:DIP-2415N IntAct:P25847
MINT:MINT-631153 STRING:P25847 PaxDb:P25847 PeptideAtlas:P25847
EnsemblFungi:YOL090W GeneID:854063 KEGG:sce:YOL090W CYGD:YOL090w
NextBio:975668 Genevestigator:P25847 GermOnline:YOL090W
Uniprot:P25847
Length = 964
Score = 183 (69.5 bits), Expect = 6.4e-13, P = 6.4e-13
Identities = 38/81 (46%), Positives = 52/81 (64%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+QV ++ +MAQ+GC+VP AE + D I R+G DS STF +E+ E
Sbjct: 691 MGGKSTYIRQVGVISLMAQIGCFVPCEEAEIAIVDAILCRVGAGDSQLKGVSTFMVEILE 750
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I++ + SLI+VDEL R
Sbjct: 751 TASILKNASKNSLIIVDELGR 771
>UNIPROTKB|P23909 [details] [associations]
symbol:mutS species:83333 "Escherichia coli K-12"
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IDA] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0032300 "mismatch repair complex"
evidence=IGI] [GO:0032136 "adenine/cytosine mispair binding"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEP] [GO:0043531 "ADP binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0000018 "regulation of DNA recombination"
evidence=IMP] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000166
"nucleotide binding" evidence=IEA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003684
GO:GO:0043531 GO:GO:0008301 GO:GO:0006298 EMBL:U29579 GO:GO:0000018
GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
PDB:2OK2 PDBsum:2OK2 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032300 HOGENOM:HOG000221407 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD EMBL:M64730 EMBL:AF004287 EMBL:AF001987 EMBL:AF001988
EMBL:AF001989 EMBL:AF001990 EMBL:AF001991 EMBL:AF001992
EMBL:AF001993 EMBL:AF001994 EMBL:AF001995 EMBL:AF001996
EMBL:AF001997 EMBL:AF001998 EMBL:AF001999 EMBL:AF002000
EMBL:AF002001 EMBL:AF002002 EMBL:AF002003 EMBL:AF002004
EMBL:AF002005 EMBL:AF002006 EMBL:AF002007 EMBL:AF002008
EMBL:AF002009 EMBL:AF002010 PIR:I54964 RefSeq:NP_417213.1
RefSeq:YP_490942.1 PDB:1E3M PDB:1NG9 PDB:1OH5 PDB:1OH6 PDB:1OH7
PDB:1OH8 PDB:1W7A PDB:1WB9 PDB:1WBB PDB:1WBD PDB:2WTU PDB:3K0S
PDBsum:1E3M PDBsum:1NG9 PDBsum:1OH5 PDBsum:1OH6 PDBsum:1OH7
PDBsum:1OH8 PDBsum:1W7A PDBsum:1WB9 PDBsum:1WBB PDBsum:1WBD
PDBsum:2WTU PDBsum:3K0S ProteinModelPortal:P23909 SMR:P23909
DIP:DIP-10287N IntAct:P23909 MINT:MINT-1264156 SWISS-2DPAGE:P23909
PRIDE:P23909 EnsemblBacteria:EBESCT00000004425
EnsemblBacteria:EBESCT00000016508 GeneID:12932427 GeneID:947206
KEGG:ecj:Y75_p2671 KEGG:eco:b2733 PATRIC:32120868 EchoBASE:EB0620
EcoGene:EG10625 BioCyc:EcoCyc:EG10625-MONOMER
BioCyc:ECOL316407:JW2703-MONOMER BioCyc:MetaCyc:EG10625-MONOMER
EvolutionaryTrace:P23909 Genevestigator:P23909 GO:GO:0032136
Uniprot:P23909
Length = 853
Score = 182 (69.1 bits), Expect = 6.9e-13, P = 6.9e-13
Identities = 37/81 (45%), Positives = 51/81 (62%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y++Q AL+ +MA +G YVPA E D I+TR+G D + STF +EM E
Sbjct: 617 MGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTE 676
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A+I+ T SL+L+DE+ R
Sbjct: 677 TANILHNATEYSLVLMDEIGR 697
>UNIPROTKB|F1P4E7 [details] [associations]
symbol:CDYL "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003824 "catalytic activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000953 InterPro:IPR001753
Pfam:PF00378 PROSITE:PS50013 SMART:SM00298 Pfam:PF00385
GO:GO:0005634 GO:GO:0003824 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598 OMA:LVRCNMK
GeneTree:ENSGT00670000097595 EMBL:AADN02036557 EMBL:AADN02036558
EMBL:AADN02036559 IPI:IPI00586090 Ensembl:ENSGALT00000020896
Uniprot:F1P4E7
Length = 537
Score = 179 (68.1 bits), Expect = 7.0e-13, P = 7.0e-13
Identities = 38/93 (40%), Positives = 57/93 (61%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F TP+T G +P+GCSS+ FPRI G + A+E+L++GRKL AQEA G VS VF
Sbjct: 407 KAWFQTPYTTFGQSPDGCSSLTFPRIMGLASANEMLFSGRKLTAQEACAKGLVSQVFWPG 466
Query: 180 EIERDLWPRIHAWAKLSSCIVSLLAHLMRGILR 212
+++ RI +S ++ L+R I++
Sbjct: 467 TFTQEVMVRIKELVTCNSVVLEESKALVRNIMK 499
>UNIPROTKB|F1NN91 [details] [associations]
symbol:CDYL2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003824 "catalytic activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000953 InterPro:IPR001753
Pfam:PF00378 PROSITE:PS50013 SMART:SM00298 Pfam:PF00385
GO:GO:0005634 GO:GO:0003824 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598 OMA:KRINPPL
GeneTree:ENSGT00670000097595 EMBL:AADN02032300 IPI:IPI00587406
Ensembl:ENSGALT00000021177 Uniprot:F1NN91
Length = 502
Score = 178 (67.7 bits), Expect = 7.9e-13, P = 7.9e-13
Identities = 38/95 (40%), Positives = 55/95 (57%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F TP+ +TP GCSS FP+I G ++A+E+L+ GRKL AQEA G VS VF
Sbjct: 372 KAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQVFWPT 431
Query: 180 EIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDG 214
+++ R+ A S+ ++ LMR L+ G
Sbjct: 432 TFSQEVMLRVKEMASCSAVVLEESKCLMRSFLKSG 466
>UNIPROTKB|F1LZV2 [details] [associations]
symbol:F1LZV2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003824 "catalytic activity" evidence=IEA]
InterPro:IPR001753 Pfam:PF00378 GO:GO:0003824
GeneTree:ENSGT00670000097595 IPI:IPI00372969
Ensembl:ENSRNOT00000049324 Uniprot:F1LZV2
Length = 416
Score = 176 (67.0 bits), Expect = 8.8e-13, P = 8.8e-13
Identities = 39/93 (41%), Positives = 58/93 (62%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F TP+T+ G +P+GCSS FP+I G + A+E+L GRKL AQEA G VS VF +
Sbjct: 287 KAWFQTPYTIFGQSPDGCSSFTFPKIMGEASANEMLLGGRKLTAQEACDKGLVSQVFWPQ 346
Query: 180 EIERDLWPRIHAWAKLSSCIVSLLAHLMRGILR 212
+++ RI +L+SC ++L + +LR
Sbjct: 347 TFNQEVMIRIK---ELASCNTAVLEE-SKALLR 375
>UNIPROTKB|F1NV33 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00821163 Ensembl:ENSGALT00000014573 ArrayExpress:F1NV33
Uniprot:F1NV33
Length = 861
Score = 181 (68.8 bits), Expect = 9.0e-13, P = 9.0e-13
Identities = 37/81 (45%), Positives = 51/81 (62%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+Q ++ +MAQ+GC+VP + AE + D I R+G DS STF EM E
Sbjct: 600 MGGKSTYIRQTGVIVLMAQIGCFVPCNSAEITIVDCILARVGAGDSQLKGVSTFMAEMLE 659
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I++ + SLI++DEL R
Sbjct: 660 TASILRTASENSLIIIDELGR 680
>UNIPROTKB|F1NFH4 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 OMA:WAISEHI GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00601005 Ensembl:ENSGALT00000039639 ArrayExpress:F1NFH4
Uniprot:F1NFH4
Length = 866
Score = 181 (68.8 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 37/81 (45%), Positives = 51/81 (62%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+Q ++ +MAQ+GC+VP + AE + D I R+G DS STF EM E
Sbjct: 605 MGGKSTYIRQTGVIVLMAQIGCFVPCNSAEITIVDCILARVGAGDSQLKGVSTFMAEMLE 664
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I++ + SLI++DEL R
Sbjct: 665 TASILRTASENSLIIIDELGR 685
>UNIPROTKB|E9PHA6 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 EMBL:AC079775
SUPFAM:SSF48334 GO:GO:0032301 GO:GO:0032302 EMBL:AC138655
HGNC:HGNC:7325 ChiTaRS:MSH2 IPI:IPI00893933
ProteinModelPortal:E9PHA6 SMR:E9PHA6 Ensembl:ENST00000406134
UCSC:uc002rvz.3 ArrayExpress:E9PHA6 Bgee:E9PHA6 Uniprot:E9PHA6
Length = 921
Score = 181 (68.8 bits), Expect = 9.9e-13, P = 9.9e-13
Identities = 38/81 (46%), Positives = 50/81 (61%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+Q ++ +MAQ+GC+VP AE + D I R+G DS STF EM E
Sbjct: 672 MGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLE 731
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I++ T SLI++DEL R
Sbjct: 732 TASILRSATKDSLIIIDELGR 752
>RGD|620786 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000287 "magnesium ion binding" evidence=IEA;ISO] [GO:0000400
"four-way junction DNA binding" evidence=IEA;ISO;IBA] [GO:0000403
"Y-form DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0002204 "somatic recombination of
immunoglobulin genes involved in immune response" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO;ISS] [GO:0003684 "damaged
DNA binding" evidence=ISO;IBA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA;ISO] [GO:0005524 "ATP binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006119 "oxidative phosphorylation" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0006301 "postreplication repair"
evidence=ISO;ISS;IBA] [GO:0006302 "double-strand break repair"
evidence=IEA;ISO;IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0006915 "apoptotic process" evidence=IEA;ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0007050 "cell cycle arrest" evidence=IEA;ISO] [GO:0007281 "germ
cell development" evidence=IEA;ISO] [GO:0007283 "spermatogenesis"
evidence=IEP] [GO:0008022 "protein C-terminus binding"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IEA;ISO] [GO:0008584 "male gonad development"
evidence=IEA;ISO] [GO:0010165 "response to X-ray"
evidence=IEA;ISO;IBA] [GO:0010224 "response to UV-B"
evidence=IEA;ISO;IBA] [GO:0014070 "response to organic cyclic
compound" evidence=IEP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IEA;ISO;IBA] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=IEA;ISO] [GO:0019237
"centromeric DNA binding" evidence=IEA;ISO] [GO:0019724 "B cell
mediated immunity" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding"
evidence=IEA;ISO] [GO:0030183 "B cell differentiation"
evidence=IEA;ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IEA;ISO;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA;ISO;IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032142 "single guanine
insertion binding" evidence=IEA;ISO] [GO:0032143 "single thymine
insertion binding" evidence=IEA;ISO] [GO:0032181 "dinucleotide
repeat insertion binding" evidence=IEA;ISO] [GO:0032301 "MutSalpha
complex" evidence=IEA;ISO;IBA] [GO:0032302 "MutSbeta complex"
evidence=IEA;ISO;IBA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA;ISO] [GO:0032405 "MutLalpha complex binding"
evidence=IEA;ISO] [GO:0042493 "response to drug" evidence=IEP]
[GO:0042771 "intrinsic apoptotic signaling pathway in response to
DNA damage by p53 class mediator" evidence=IBA] [GO:0042803
"protein homodimerization activity" evidence=IEA;ISO] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO]
[GO:0043200 "response to amino acid stimulus" evidence=IEP]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA;ISO] [GO:0043531 "ADP binding" evidence=IEA;ISO]
[GO:0043570 "maintenance of DNA repeat elements"
evidence=IEA;ISO;IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IEA;ISO;IBA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA;ISO] [GO:0051096
"positive regulation of helicase activity" evidence=IEA;ISO]
[GO:0003690 "double-stranded DNA binding" evidence=ISO] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
RGD:620786 GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 CTD:4436
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:X93591
IPI:IPI00211849 PIR:JC6184 RefSeq:NP_112320.1 UniGene:Rn.3174
ProteinModelPortal:P54275 SMR:P54275 STRING:P54275
PhosphoSite:P54275 PRIDE:P54275 GeneID:81709 KEGG:rno:81709
UCSC:RGD:620786 InParanoid:P54275 NextBio:615336
ArrayExpress:P54275 Genevestigator:P54275
GermOnline:ENSRNOG00000015796 Uniprot:P54275
Length = 933
Score = 181 (68.8 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 38/81 (46%), Positives = 50/81 (61%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+Q ++ +MAQ+GC+VP AE + D I R+G DS STF EM E
Sbjct: 672 MGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLE 731
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I++ T SLI++DEL R
Sbjct: 732 TASILRSATKDSLIIIDELGR 752
>UNIPROTKB|F1PM37 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0030983
"mismatched DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GO:GO:0032301 KO:K08735 OMA:WAISEHI GO:GO:0032302 CTD:4436
GeneTree:ENSGT00550000074867 EMBL:AAEX03007498 EMBL:AAEX03007499
EMBL:AAEX03007500 RefSeq:XP_538482.2 Ensembl:ENSCAFT00000004191
GeneID:494002 KEGG:cfa:494002 Uniprot:F1PM37
Length = 934
Score = 181 (68.8 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 38/81 (46%), Positives = 50/81 (61%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+Q ++ +MAQ+GC+VP AE + D I R+G DS STF EM E
Sbjct: 672 MGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLE 731
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I++ T SLI++DEL R
Sbjct: 732 TASILRSATKDSLIIIDELGR 752
>UNIPROTKB|P43246 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0019237 "centromeric DNA binding"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=ISS;IBA] [GO:0010224
"response to UV-B" evidence=ISS;IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0042771
"intrinsic apoptotic signaling pathway in response to DNA damage by
p53 class mediator" evidence=IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0019901 "protein kinase binding" evidence=IPI]
[GO:0006298 "mismatch repair" evidence=IDA] [GO:0006301
"postreplication repair" evidence=IDA] [GO:0008022 "protein
C-terminus binding" evidence=IPI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA;IMP] [GO:0032405
"MutLalpha complex binding" evidence=IDA] [GO:0032301 "MutSalpha
complex" evidence=IDA] [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0032302 "MutSbeta complex" evidence=IDA]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032143 "single thymine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA] [GO:0000400
"four-way junction DNA binding" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=ISS] [GO:0008584 "male gonad
development" evidence=ISS] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISS] [GO:0030183 "B cell
differentiation" evidence=ISS] [GO:0043524 "negative regulation of
neuron apoptotic process" evidence=ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=ISS;IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=IDA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0042803 GO:GO:0042771 GO:GO:0042493 GO:GO:0003684
GO:GO:0001701 GO:GO:0043524 GO:GO:0007050 GO:GO:0007283
GO:GO:0006119 GO:GO:0008584 GO:GO:0019237 GO:GO:0014070
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 Orphanet:144
GO:GO:0006301 GO:GO:0031573 MIM:608089 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 EMBL:AC079775 eggNOG:COG0249 SUPFAM:SSF48334
MIM:158320 Orphanet:587 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0051096 EMBL:U03911 EMBL:U04045 EMBL:U41221
EMBL:U41206 EMBL:U41207 EMBL:U41208 EMBL:U41210 EMBL:U41211
EMBL:U41212 EMBL:U41213 EMBL:U41214 EMBL:U41215 EMBL:U41216
EMBL:U41217 EMBL:U41218 EMBL:U41219 EMBL:U41220 EMBL:L47583
EMBL:L47582 EMBL:L47581 EMBL:AY601851 EMBL:AK304496 EMBL:BX649122
EMBL:AC138655 EMBL:BC021566 EMBL:AF066081 IPI:IPI00017303
IPI:IPI01014700 PIR:I64819 RefSeq:NP_000242.1 UniGene:Hs.597656
PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F PDB:3THW PDB:3THX
PDB:3THY PDB:3THZ PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E
PDBsum:2O8F PDBsum:3THW PDBsum:3THX PDBsum:3THY PDBsum:3THZ
ProteinModelPortal:P43246 SMR:P43246 DIP:DIP-35054N IntAct:P43246
MINT:MINT-84789 STRING:P43246 PhosphoSite:P43246 DMDM:1171032
PaxDb:P43246 PeptideAtlas:P43246 PRIDE:P43246 DNASU:4436
Ensembl:ENST00000233146 Ensembl:ENST00000543555 GeneID:4436
KEGG:hsa:4436 UCSC:uc002rvy.1 GeneCards:GC02P047630 HGNC:HGNC:7325
HPA:CAB009572 MIM:120435 MIM:609309 neXtProt:NX_P43246
PharmGKB:PA31133 InParanoid:P43246 PhylomeDB:P43246 ChiTaRS:MSH2
EvolutionaryTrace:P43246 GenomeRNAi:4436 NextBio:17289
ArrayExpress:P43246 Bgee:P43246 CleanEx:HS_MSH2
Genevestigator:P43246 GermOnline:ENSG00000095002 Uniprot:P43246
Length = 934
Score = 181 (68.8 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 38/81 (46%), Positives = 50/81 (61%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+Q ++ +MAQ+GC+VP AE + D I R+G DS STF EM E
Sbjct: 672 MGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLE 731
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I++ T SLI++DEL R
Sbjct: 732 TASILRSATKDSLIIIDELGR 752
>MGI|MGI:101816 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IGI] [GO:0002204 "somatic recombination of immunoglobulin
genes involved in immune response" evidence=IGI] [GO:0003677 "DNA
binding" evidence=ISO;IMP] [GO:0003684 "damaged DNA binding"
evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IC;IDA] [GO:0006119 "oxidative
phosphorylation" evidence=IMP] [GO:0006200 "ATP catabolic process"
evidence=ISO;IMP] [GO:0006281 "DNA repair" evidence=ISO;IMP]
[GO:0006298 "mismatch repair" evidence=IGI;ISO;IDA;IMP] [GO:0006301
"postreplication repair" evidence=ISO;IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006915 "apoptotic process"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0010165 "response to X-ray" evidence=IMP] [GO:0010224 "response
to UV-B" evidence=IMP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IGI;IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IGI;IMP]
[GO:0016887 "ATPase activity" evidence=IMP] [GO:0019237
"centromeric DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=IMP] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0030183 "B cell differentiation" evidence=IMP] [GO:0030983
"mismatched DNA binding" evidence=IMP] [GO:0031573 "intra-S DNA
damage checkpoint" evidence=IGI] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO;IDA] [GO:0032138 "single base
insertion or deletion binding" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=ISO;IDA] [GO:0032302 "MutSbeta complex"
evidence=ISO;IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IMP] [GO:0043570 "maintenance of DNA
repeat elements" evidence=ISO;IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IMP] [GO:0045910 "negative regulation
of DNA recombination" evidence=ISO;IMP] [GO:0051096 "positive
regulation of helicase activity" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 MGI:MGI:101816
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 EMBL:X81143 EMBL:U21011 EMBL:BC047117
IPI:IPI00118158 PIR:S53608 RefSeq:NP_032654.1 UniGene:Mm.4619
ProteinModelPortal:P43247 SMR:P43247 IntAct:P43247 STRING:P43247
PhosphoSite:P43247 PaxDb:P43247 PRIDE:P43247
Ensembl:ENSMUST00000024967 GeneID:17685 KEGG:mmu:17685
InParanoid:P43247 NextBio:292252 Bgee:P43247 CleanEx:MM_MSH2
Genevestigator:P43247 GermOnline:ENSMUSG00000024151 Uniprot:P43247
Length = 935
Score = 181 (68.8 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 38/81 (46%), Positives = 50/81 (61%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+Q ++ +MAQ+GC+VP AE + D I R+G DS STF EM E
Sbjct: 672 MGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLE 731
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I++ T SLI++DEL R
Sbjct: 732 TASILRSATKDSLIIIDELGR 752
>ASPGD|ASPL0000073909 [details] [associations]
symbol:AN10621 species:162425 "Emericella nidulans"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000404 "loop DNA
binding" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0000406 "double-strand/single-strand DNA
junction binding" evidence=IEA] [GO:0032138 "single base insertion
or deletion binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0036297
"interstrand cross-link repair" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006200 GO:GO:0016887 GO:GO:0030466 GO:GO:0006298
EMBL:BN001303 GO:GO:0000228 GO:GO:0000403 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
GO:GO:0032138 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0000735 EnsemblFungi:CADANIAT00005387 Uniprot:C8V8L9
Length = 945
Score = 181 (68.8 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 36/81 (44%), Positives = 53/81 (65%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+ + ++ +MAQ+GC+VP + AE + D I R+G +DS STF EM E
Sbjct: 668 MGGKSTYIRMIGVIALMAQIGCFVPCTEAELTIFDCILARVGASDSQLKGVSTFMAEMLE 727
Query: 61 IAHIIQFLTPRSLILVDELCR 81
++I++ T SLI++DEL R
Sbjct: 728 TSNILKSATSESLIIIDELGR 748
>UNIPROTKB|Q75D87 [details] [associations]
symbol:AGOS_ABR137W "ABR137Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] [GO:0043504
"mitochondrial DNA repair" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000404 "loop DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0007131 "reciprocal meiotic recombination" evidence=IRD]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005739 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AE016815 GenomeReviews:AE016815_GR GO:GO:0008094
GO:GO:0043504 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000157750
OrthoDB:EOG42591V SUPFAM:SSF53150 GO:GO:0032300 GO:GO:0032139
RefSeq:NP_983084.2 STRING:Q75D87 EnsemblFungi:AAS50908
GeneID:4619194 KEGG:ago:AGOS_ABR137W Uniprot:Q75D87
Length = 955
Score = 181 (68.8 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 34/81 (41%), Positives = 55/81 (67%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS +++Q A++ I+AQ+GCYVP + A L D I++R+G D + + STF +EM E
Sbjct: 768 MGGKSTFLRQTAIIVILAQIGCYVPCASAHIGLVDKIFSRVGSADDLYNDMSTFMVEMLE 827
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+ +++ T RSL ++DE+ R
Sbjct: 828 TSFMLKGATKRSLAILDEIGR 848
>POMBASE|SPAC8F11.03 [details] [associations]
symbol:msh3 "MutS protein homolog 3" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0007534 "gene conversion at
mating-type locus" evidence=IMP] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0061500 "gene conversion at
mating-type locus, termination of copy-synthesis" evidence=IMP]
[GO:0006298 "mismatch repair" evidence=TAS] [GO:0000403 "Y-form DNA
binding" evidence=ISO] [GO:0000404 "loop DNA binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPAC8F11.03
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006281
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0032135 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0000406 GO:GO:0007534 OrthoDB:EOG42NN7M EMBL:X61306
PIR:S22569 ProteinModelPortal:P26359 STRING:P26359 PRIDE:P26359
NextBio:20804407 Uniprot:P26359
Length = 993
Score = 181 (68.8 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 36/81 (44%), Positives = 53/81 (65%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS ++KQ+AL IMAQ GC+VPA A + D I R+G +D++ N STF +EM E
Sbjct: 762 MGGKSSFVKQLALSAIMAQSGCFVPAKSALLPIFDSILIRMGSSDNLSVNMSTFMVEMLE 821
Query: 61 IAHIIQFLTPRSLILVDELCR 81
++ T +S++++DEL R
Sbjct: 822 TKEVLSKATEKSMVIIDELGR 842
>UNIPROTKB|Q3MHE4 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9913
"Bos taurus" [GO:0045190 "isotype switching" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0032301 "MutSalpha complex" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] [GO:0010165 "response to X-ray"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0006302 "double-strand break repair" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0051096 "positive regulation of
helicase activity" evidence=IEA] [GO:0043531 "ADP binding"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0032405 "MutLalpha complex binding"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032181 "dinucleotide repeat insertion binding"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0030183 "B cell differentiation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0006119
"oxidative phosphorylation" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0000287
GO:GO:0003684 GO:GO:0001701 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0006119 GO:GO:0008584 GO:GO:0019237
GO:GO:0003697 GO:GO:0007281 GO:GO:0030183 GO:GO:0006302
GO:GO:0045190 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:BC105268 IPI:IPI00904469
RefSeq:NP_001029756.1 UniGene:Bt.635 ProteinModelPortal:Q3MHE4
SMR:Q3MHE4 STRING:Q3MHE4 PRIDE:Q3MHE4 Ensembl:ENSBTAT00000003556
GeneID:533115 KEGG:bta:533115 CTD:4436 GeneTree:ENSGT00550000074867
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 NextBio:20875918 GO:GO:0032181
GO:GO:0032357 GO:GO:0032142 GO:GO:0032143 GO:GO:0051096
Uniprot:Q3MHE4
Length = 934
Score = 180 (68.4 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 38/81 (46%), Positives = 50/81 (61%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+Q ++ +MAQ+GC+VP AE + D I R+G DS STF EM E
Sbjct: 672 MGGKSTYIRQTGVVVLMAQIGCFVPCEWAEVSIVDCILARVGAGDSQLKGVSTFMAEMLE 731
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I++ T SLI++DEL R
Sbjct: 732 TASILRSATKDSLIIIDELGR 752
>UNIPROTKB|Q74ZT2 [details] [associations]
symbol:AGOS_AGR116W "AGR116Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:AE016820 GenomeReviews:AE016820_GR GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261 PIRSF:PIRSF037677
HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5 RefSeq:NP_986782.2
STRING:Q74ZT2 EnsemblFungi:AAS54606 GeneID:4623084
KEGG:ago:AGOS_AGR116W Uniprot:Q74ZT2
Length = 1167
Score = 181 (68.8 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 52/156 (33%), Positives = 73/156 (46%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
+GKS ++ + IMAQ+GCYVP AE D I TR+G ND+I STF +E+ E
Sbjct: 914 AGKSTILRMTCIAVIMAQLGCYVPCEDAELSPMDRIMTRLGANDNIMQGKSTFFVELSET 973
Query: 62 AHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFVLQA 121
I+ T R+LI++DEL R G + E + H+ T Q ++
Sbjct: 974 RKILDMATNRTLIVLDELGRGGSSSDGFAI-AEGVLHHISTHVQSLGFFATHYGTLGQSF 1032
Query: 122 TFHT---PFTLRGMTPEGCSSV--LFPRIFGNSVAS 152
T H P + + EG V L+ I G S S
Sbjct: 1033 THHPMVKPLQMAILVDEGSKKVTFLYKLIEGQSEGS 1068
>DICTYBASE|DDB_G0275999 [details] [associations]
symbol:msh1 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISS;IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IRD] [GO:0007131 "reciprocal meiotic recombination"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0043504 "mitochondrial DNA repair"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0275999
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GenomeReviews:CM000151_GR
EMBL:AAFI02000013 GO:GO:0006298 GO:GO:0008094 GO:GO:0043504
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
GO:GO:0032139 OMA:ITQTVRD RefSeq:XP_643371.1 STRING:Q552L1
EnsemblProtists:DDB0232360 GeneID:8620254 KEGG:ddi:DDB_G0275999
InParanoid:Q552L1 ProtClustDB:CLSZ2729174 Uniprot:Q552L1
Length = 898
Score = 179 (68.1 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 35/81 (43%), Positives = 57/81 (70%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS +++Q AL+ +MAQ+G +VPAS A+ + D I++R+G +D + + STF +EM E
Sbjct: 703 MGGKSTFLRQNALIILMAQMGSFVPASYAKIGIVDAIFSRVGSSDDLSNDKSTFMVEMVE 762
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I++ T RS +++DE+ R
Sbjct: 763 TASILKKATNRSFVIMDEVGR 783
>UNIPROTKB|B3STU9 [details] [associations]
symbol:CDYL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003824 "catalytic activity" evidence=IEA]
InterPro:IPR001753 Pfam:PF00378 GO:GO:0003824 HOVERGEN:HBG006723
GeneTree:ENSGT00670000097595 EMBL:DAAA02055863 EMBL:DAAA02055864
EMBL:DAAA02055865 EMBL:DAAA02055866 IPI:IPI00867081
UniGene:Bt.35764 EMBL:EF690281 Ensembl:ENSBTAT00000065909
InParanoid:B3STU9 Uniprot:B3STU9
Length = 309
Score = 170 (64.9 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 36/79 (45%), Positives = 52/79 (65%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F TP+T G +P+GCS+V+FP+I G + A+E+L +GRKL AQEA G VS VF
Sbjct: 179 KAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPG 238
Query: 180 EIERDLWPRIHAWAKLSSC 198
+++ RI +L+SC
Sbjct: 239 TFTQEVMVRIK---ELASC 254
>UNIPROTKB|F1RX06 [details] [associations]
symbol:CDYL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003824 "catalytic activity" evidence=IEA]
InterPro:IPR001753 Pfam:PF00378 GO:GO:0003824
GeneTree:ENSGT00670000097595 EMBL:CU633487 EMBL:CU694314
Ensembl:ENSSSCT00000001090 OMA:CDIVWAN ArrayExpress:F1RX06
Uniprot:F1RX06
Length = 309
Score = 170 (64.9 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 36/79 (45%), Positives = 52/79 (65%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F TP+T G +P+GCS+V+FP+I G + A+E+L +GRKL AQEA G VS VF
Sbjct: 179 KAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPG 238
Query: 180 EIERDLWPRIHAWAKLSSC 198
+++ RI +L+SC
Sbjct: 239 TFTQEVMVRIK---ELASC 254
>UNIPROTKB|A3KGM9 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00790547
SMR:A3KGM9 Ensembl:ENST00000412975 UCSC:uc011iro.1 Uniprot:A3KGM9
Length = 401
Score = 173 (66.0 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
SGKS+Y+KQV L+ MA VG +VPA AE D I+TRI +SI STF +++ ++
Sbjct: 270 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 329
Query: 62 AHIIQFLTPRSLILVDE 78
A + T +SL+L+DE
Sbjct: 330 AKAVNNATAQSLVLIDE 346
>UNIPROTKB|E1B8D2 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0000795 "synaptonemal
complex" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007292
GO:GO:0007129 GO:GO:0000795 SUPFAM:SSF48334 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 EMBL:DAAA02055381 IPI:IPI00710632
Ensembl:ENSBTAT00000026367 Uniprot:E1B8D2
Length = 831
Score = 178 (67.7 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 37/77 (48%), Positives = 50/77 (64%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
SGKS+Y+KQV L+ MA VG +VPA AE D I+TRI +SI STF +++ ++
Sbjct: 593 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 652
Query: 62 AHIIQFLTPRSLILVDE 78
A + T RSL+LVDE
Sbjct: 653 AKAVNNATERSLVLVDE 669
>UNIPROTKB|B1N4L6 [details] [associations]
symbol:EHI_123830 "DNA mismatch repair protein Msh2,
putative" species:5759 "Entamoeba histolytica" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 EMBL:DS571433 RefSeq:XP_001914132.1
ProteinModelPortal:B1N4L6 STRING:B1N4L6 GeneID:6220147
KEGG:ehi:EHI_123830 EuPathDB:AmoebaDB:EHI_123830 InParanoid:B1N4L6
ProtClustDB:CLSZ2734733 Uniprot:B1N4L6
Length = 630
Score = 176 (67.0 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 37/81 (45%), Positives = 50/81 (61%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y++ + L IMAQ+G ++P S A + D I RIG D+I STF EMK+
Sbjct: 370 MGGKSTYLRMIGLCVIMAQIGMFIPCSEAHISICDKIMCRIGAGDNIVEGMSTFMSEMKD 429
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+ II+ T SL+L+DEL R
Sbjct: 430 TSEIIKKSTKNSLVLIDELGR 450
>UNIPROTKB|Q5B374 [details] [associations]
symbol:AN5006.2 "Putative uncharacterized protein"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007720 InterPro:IPR007860
InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624 Pfam:PF05024
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0016021 GO:GO:0005524
GO:GO:0003684 GO:GO:0030466 GO:GO:0006506 EMBL:AACD01000084
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 GO:GO:0017176
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
OrthoDB:EOG4S7NZ5 GO:GO:0000735 RefSeq:XP_662610.1
ProteinModelPortal:Q5B374 STRING:Q5B374 GeneID:2872806
KEGG:ani:AN5006.2 Uniprot:Q5B374
Length = 1644
Score = 181 (68.8 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 36/81 (44%), Positives = 53/81 (65%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+ + ++ +MAQ+GC+VP + AE + D I R+G +DS STF EM E
Sbjct: 668 MGGKSTYIRMIGVIALMAQIGCFVPCTEAELTIFDCILARVGASDSQLKGVSTFMAEMLE 727
Query: 61 IAHIIQFLTPRSLILVDELCR 81
++I++ T SLI++DEL R
Sbjct: 728 TSNILKSATSESLIIIDELGR 748
>FB|FBgn0015546 [details] [associations]
symbol:spel1 "spellchecker1" species:7227 "Drosophila
melanogaster" [GO:0006298 "mismatch repair" evidence=ISS;NAS;IMP]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
[GO:0006301 "postreplication repair" evidence=IBA;NAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0042771 EMBL:AE014134 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GeneTree:ENSGT00550000074867 EMBL:U17893
RefSeq:NP_001014482.1 RefSeq:NP_001246031.1 RefSeq:NP_523565.2
UniGene:Dm.2676 ProteinModelPortal:P43248 SMR:P43248 DIP:DIP-21499N
IntAct:P43248 MINT:MINT-1547583 STRING:P43248 PaxDb:P43248
EnsemblMetazoa:FBtr0080630 EnsemblMetazoa:FBtr0309281 GeneID:34842
KEGG:dme:Dmel_CG4215 UCSC:CG4215-RA CTD:34842 FlyBase:FBgn0015546
InParanoid:P43248 OrthoDB:EOG4S1RP5 PhylomeDB:P43248
GenomeRNAi:34842 NextBio:790493 Bgee:P43248 GermOnline:CG4215
Uniprot:P43248
Length = 917
Score = 178 (67.7 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 41/105 (39%), Positives = 60/105 (57%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+ V +MA +G +VP SLA + D I R+G +D+I STF +EM E
Sbjct: 670 MGGKSTYIRSVGTAVLMAHIGAFVPCSLATISMVDSILGRVGASDNIIKGLSTFMVEMIE 729
Query: 61 IAHIIQFLTPRSLILVDELCRAGIEPPPSC-LPGERLDHYARTTE 104
+ II+ T +SL+++DEL R G C + +H A+ T+
Sbjct: 730 TSGIIRTATDKSLVIIDELGR-GTSTYEGCGIAWSIAEHLAKETK 773
>ZFIN|ZDB-GENE-040426-2932 [details] [associations]
symbol:msh2 "mutS homolog 2 (E. coli)"
species:7955 "Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA;ISS] [GO:0032302 "MutSbeta complex"
evidence=IEA;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IGI;IDA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0010224 "response to UV-B" evidence=IBA] [GO:0031573 "intra-S
DNA damage checkpoint" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0045190 "isotype switching" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0042771 "intrinsic apoptotic
signaling pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0016446
"somatic hypermutation of immunoglobulin genes" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-040426-2932 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0045190 GO:GO:0010165 GO:GO:0010224
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0031573 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOVERGEN:HBG006399
HSSP:P23909 EMBL:AF412833 IPI:IPI00509799 UniGene:Dr.105564
ProteinModelPortal:Q90XA7 SMR:Q90XA7 STRING:Q90XA7
InParanoid:Q90XA7 ArrayExpress:Q90XA7 Uniprot:Q90XA7
Length = 936
Score = 178 (67.7 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 37/81 (45%), Positives = 51/81 (62%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+QV ++ +MAQ+GC+VP AE + D + R+G DS STF EM E
Sbjct: 672 MGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAGDSQIKGVSTFMAEMLE 731
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I++ + SLI++DEL R
Sbjct: 732 TAAILRSASEDSLIIIDELGR 752
>UNIPROTKB|B0V0L9 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334 EMBL:CR759915
UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5
SMR:B0V0L9 Ensembl:ENST00000458424 Uniprot:B0V0L9
Length = 466
Score = 173 (66.0 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
SGKS+Y+KQV L+ MA VG +VPA AE D I+TRI +SI STF +++ ++
Sbjct: 258 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 317
Query: 62 AHIIQFLTPRSLILVDE 78
A + T +SL+L+DE
Sbjct: 318 AKAVNNATAQSLVLIDE 334
>POMBASE|SPCC285.16c [details] [associations]
symbol:msh6 "MutS protein homolog" species:4896
"Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=ISO]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPCC285.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0006298 GO:GO:0043570
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677 EMBL:AF207839
PIR:T41262 RefSeq:NP_588344.1 ProteinModelPortal:O74502
STRING:O74502 EnsemblFungi:SPCC285.16c.1 GeneID:2539215
KEGG:spo:SPCC285.16c HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
NextBio:20800385 Uniprot:O74502
Length = 1254
Score = 179 (68.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 37/81 (45%), Positives = 51/81 (62%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS ++QV + IMAQ+GC+VPA A IYTR+G ND I STF +E+ E
Sbjct: 1027 MAGKSTLLRQVCIAVIMAQLGCWVPAKRASITPMTSIYTRLGANDDIMSARSTFMVELSE 1086
Query: 61 IAHIIQFLTPRSLILVDELCR 81
I+ P+SL+++DEL R
Sbjct: 1087 TKKILDECGPKSLVILDELGR 1107
>UNIPROTKB|A2BEX4 [details] [associations]
symbol:MSH5-SAPCD1 "MutS protein homolog 5" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
EMBL:CR759915 UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449
ChiTaRS:MSH5 EMBL:BX248133 SMR:A2BEX4 Ensembl:ENST00000414514
Ensembl:ENST00000414810 Ensembl:ENST00000437726
Ensembl:ENST00000454820 Ensembl:ENST00000466318
Ensembl:ENST00000495073 HGNC:HGNC:41994 Uniprot:A2BEX4
Length = 496
Score = 173 (66.0 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
SGKS+Y+KQV L+ MA VG +VPA AE D I+TRI +SI STF +++ ++
Sbjct: 258 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 317
Query: 62 AHIIQFLTPRSLILVDE 78
A + T +SL+L+DE
Sbjct: 318 AKAVNNATAQSLVLIDE 334
>SGD|S000001162 [details] [associations]
symbol:MSH1 "DNA-binding protein involved in repair of
mitochondrial DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0043570
"maintenance of DNA repeat elements" evidence=IRD] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0043504 "mitochondrial DNA
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IDA] [GO:0000002 "mitochondrial genome maintenance"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IMP] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001162 GO:GO:0005739 GO:GO:0005524
GO:GO:0003684 EMBL:BK006934 GO:GO:0006298 EMBL:U00059 GO:GO:0008094
GO:GO:0043504 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150 EMBL:M84169
PIR:S48962 RefSeq:NP_011988.1 ProteinModelPortal:P25846 SMR:P25846
DIP:DIP-6433N IntAct:P25846 MINT:MINT-683422 STRING:P25846
PaxDb:P25846 EnsemblFungi:YHR120W GeneID:856520 KEGG:sce:YHR120W
CYGD:YHR120w OMA:KERLLNP NextBio:982278 Genevestigator:P25846
GermOnline:YHR120W GO:GO:0032300 GO:GO:0032139 Uniprot:P25846
Length = 959
Score = 177 (67.4 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 34/81 (41%), Positives = 54/81 (66%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS +++Q A++ I+AQ+GC+VP S A + D +++R+G D + STF +EM E
Sbjct: 774 MGGKSTFLRQNAIIVILAQIGCFVPCSKARVGIVDKLFSRVGSADDLYNEMSTFMVEMIE 833
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+ I+Q T RSL ++DE+ R
Sbjct: 834 TSFILQGATERSLAILDEIGR 854
>UNIPROTKB|A2ABF0 [details] [associations]
symbol:MSH5 "cDNA FLJ39914 fis, clone SPLEN2018732, highly
similar to MutS protein homolog 5" species:9606 "Homo sapiens"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:AL662899 EMBL:BX248244 EMBL:CR759787 GO:GO:0006298
GO:GO:0030983 EMBL:AL662834 EMBL:CR936239 SUPFAM:SSF48334
EMBL:CR759915 EMBL:CR925765 UniGene:Hs.647011 HGNC:HGNC:7328
HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:BX248133 EMBL:AK097233
IPI:IPI00798222 SMR:A2ABF0 STRING:A2ABF0 Ensembl:ENST00000395853
Ensembl:ENST00000414412 Ensembl:ENST00000430216
Ensembl:ENST00000436004 Ensembl:ENST00000439816
Ensembl:ENST00000448169 HOGENOM:HOG000231215 Uniprot:A2ABF0
Length = 508
Score = 173 (66.0 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
SGKS+Y+KQV L+ MA VG +VPA AE D I+TRI +SI STF +++ ++
Sbjct: 270 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 329
Query: 62 AHIIQFLTPRSLILVDE 78
A + T +SL+L+DE
Sbjct: 330 AKAVNNATAQSLVLIDE 346
>MGI|MGI:1339956 [details] [associations]
symbol:Cdyl "chromodomain protein, Y chromosome-like"
species:10090 "Mus musculus" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004402 "histone acetyltransferase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016746 "transferase
activity, transferring acyl groups" evidence=IEA] [GO:0035064
"methylated histone residue binding" evidence=ISO]
InterPro:IPR000953 InterPro:IPR001753 Pfam:PF00378 PROSITE:PS50013
SMART:SM00298 MGI:MGI:1339956 Pfam:PF00385 GO:GO:0005634
GO:GO:0006355 GO:GO:0016573 GO:GO:0006351 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG1024 GO:GO:0004402 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOGENOM:HOG000111507
HOVERGEN:HBG006723 CTD:9425 OMA:LVRCNMK OrthoDB:EOG4KPT9K
EMBL:AF081260 EMBL:AF081261 EMBL:AK156509 EMBL:BC055103
EMBL:BC062123 IPI:IPI00466664 IPI:IPI00849838 RefSeq:NP_001116858.1
RefSeq:NP_034011.1 UniGene:Mm.29002 ProteinModelPortal:Q9WTK2
SMR:Q9WTK2 STRING:Q9WTK2 PhosphoSite:Q9WTK2 PaxDb:Q9WTK2
PRIDE:Q9WTK2 Ensembl:ENSMUST00000075220 Ensembl:ENSMUST00000163595
GeneID:12593 KEGG:mmu:12593 UCSC:uc007qce.2 UCSC:uc007qcf.2
GeneTree:ENSGT00670000097595 InParanoid:Q9WTK2 NextBio:281746
Bgee:Q9WTK2 CleanEx:MM_CDYL Genevestigator:Q9WTK2
GermOnline:ENSMUSG00000059288 Uniprot:Q9WTK2
Length = 593
Score = 174 (66.3 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 36/79 (45%), Positives = 53/79 (67%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F TP+T G +P+GCS+V+FP+I G + A+E+L++GRKL AQEA G VS VF
Sbjct: 463 KAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLFSGRKLTAQEACGKGLVSQVFWPG 522
Query: 180 EIERDLWPRIHAWAKLSSC 198
+++ RI +L+SC
Sbjct: 523 TFTQEVMVRIK---ELASC 538
>UNIPROTKB|B4DZX3 [details] [associations]
symbol:MSH5 "cDNA FLJ54211, highly similar to MutS protein
homolog 5" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AL662899
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR925765 UniGene:Hs.647011
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:AK303129
IPI:IPI01015677 SMR:B4DZX3 STRING:B4DZX3 Ensembl:ENST00000431848
Ensembl:ENST00000547775 Ensembl:ENST00000549618
Ensembl:ENST00000551879 Uniprot:B4DZX3
Length = 533
Score = 173 (66.0 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
SGKS+Y+KQV L+ MA VG +VPA AE D I+TRI +SI STF +++ ++
Sbjct: 295 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 354
Query: 62 AHIIQFLTPRSLILVDE 78
A + T +SL+L+DE
Sbjct: 355 AKAVNNATAQSLVLIDE 371
>POMBASE|SPAC13F5.01c [details] [associations]
symbol:msh1 "mitochondrial MutS protein Msh1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005524
"ATP binding" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISS;IDA] [GO:0006298 "mismatch repair" evidence=ISM]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0030983 "mismatched DNA binding" evidence=ISM] [GO:0043504
"mitochondrial DNA repair" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 PomBase:SPAC13F5.01c GO:GO:0005739
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 GO:GO:0043504 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 EMBL:AB027833 PIR:T38256 RefSeq:NP_593649.2
ProteinModelPortal:O13921 STRING:O13921 PRIDE:O13921
EnsemblFungi:SPAC13F5.01c.1 GeneID:2542833 KEGG:spo:SPAC13F5.01c
HOGENOM:HOG000157750 OMA:LAMQCGD OrthoDB:EOG42591V NextBio:20803875
SUPFAM:SSF53150 Uniprot:O13921
Length = 941
Score = 176 (67.0 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 34/81 (41%), Positives = 56/81 (69%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS +++Q A++ I+AQ+G +VPAS A + D I++RIG D++ STF +EM E
Sbjct: 750 MAGKSTFLRQNAIISILAQIGSFVPASNARIGIVDQIFSRIGSADNLYQQKSTFMVEMME 809
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+ I++ T RS +++DE+ R
Sbjct: 810 TSFILKNATRRSFVIMDEIGR 830
>FB|FBgn0036486 [details] [associations]
symbol:Msh6 "Msh6" species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006301 "postreplication
repair" evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 EMBL:AE014296 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:BT050543 RefSeq:NP_648755.1 UniGene:Dm.966
ProteinModelPortal:Q9VUM0 SMR:Q9VUM0 DIP:DIP-23712N
MINT:MINT-323400 STRING:Q9VUM0 PaxDb:Q9VUM0
EnsemblMetazoa:FBtr0075646 GeneID:39654 KEGG:dme:Dmel_CG7003
UCSC:CG7003-RA CTD:2956 FlyBase:FBgn0036486
GeneTree:ENSGT00550000075024 InParanoid:Q9VUM0 OrthoDB:EOG4PNVXR
PhylomeDB:Q9VUM0 GenomeRNAi:39654 NextBio:814711 Bgee:Q9VUM0
GermOnline:CG7003 Uniprot:Q9VUM0
Length = 1190
Score = 177 (67.4 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 36/81 (44%), Positives = 52/81 (64%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS +++V LL IMAQ+G ++PA+ L D I+TR+G D I STF +E+ E
Sbjct: 961 MGGKSTLMREVGLLVIMAQIGAHIPAASCRLSLVDRIFTRLGAQDDILAGHSTFLVELNE 1020
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+ I++ T SL+L+DEL R
Sbjct: 1021 TSLILKHATCHSLVLLDELGR 1041
>UNIPROTKB|B3STU8 [details] [associations]
symbol:CDYL "Chromodomain protein Y-like variant 2"
species:9913 "Bos taurus" [GO:0003824 "catalytic activity"
evidence=IEA] InterPro:IPR001753 Pfam:PF00378 GO:GO:0003824
HOVERGEN:HBG006723 GeneTree:ENSGT00670000097595 EMBL:DAAA02055863
EMBL:DAAA02055864 EMBL:DAAA02055865 EMBL:DAAA02055866
IPI:IPI00867081 UniGene:Bt.35764 EMBL:EF690280
Ensembl:ENSBTAT00000063952 InParanoid:B3STU8 Uniprot:B3STU8
Length = 412
Score = 170 (64.9 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 36/79 (45%), Positives = 52/79 (65%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F TP+T G +P+GCS+V+FP+I G + A+E+L +GRKL AQEA G VS VF
Sbjct: 282 KAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPG 341
Query: 180 EIERDLWPRIHAWAKLSSC 198
+++ RI +L+SC
Sbjct: 342 TFTQEVMVRIK---ELASC 357
>UNIPROTKB|F1MER1 [details] [associations]
symbol:CDYL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] InterPro:IPR000953 InterPro:IPR001753
Pfam:PF00378 PROSITE:PS50013 SMART:SM00298 Pfam:PF00385
GO:GO:0005634 GO:GO:0003824 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598 OMA:KRINPPL
GeneTree:ENSGT00670000097595 EMBL:DAAA02046094 IPI:IPI00944413
Ensembl:ENSBTAT00000022750 Uniprot:F1MER1
Length = 498
Score = 171 (65.3 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 37/93 (39%), Positives = 54/93 (58%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F TP+ +TP GCSS FP+I G ++A+E+L+ GRKL AQEA G VS VF
Sbjct: 368 KAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQVFWPT 427
Query: 180 EIERDLWPRIHAWAKLSSCIVSLLAHLMRGILR 212
+++ R+ A S+ ++ L+R LR
Sbjct: 428 TFSQEVMLRVKEMASCSAVVLEESKCLVRSFLR 460
>SGD|S000002504 [details] [associations]
symbol:MSH6 "Protein required for mismatch repair in mitosis
and meiosis, forms a" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000710 "meiotic
mismatch repair" evidence=IMP] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032138 "single base insertion or
deletion binding" evidence=IMP;IDA] [GO:0000400 "four-way junction
DNA binding" evidence=IDA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002504
GO:GO:0005524 KO:K06630 GO:GO:0009411 GO:GO:0003684 EMBL:BK006938
GO:GO:0030983 EMBL:Z47746 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 RefSeq:NP_010384.3 GeneID:851676 KEGG:sce:YDR099W
GO:GO:0008094 GO:GO:0036297 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0000710 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
PIR:S51246 RefSeq:NP_010382.3 ProteinModelPortal:Q03834 SMR:Q03834
DIP:DIP-2423N IntAct:Q03834 MINT:MINT-618151 STRING:Q03834
PaxDb:Q03834 PeptideAtlas:Q03834 EnsemblFungi:YDR097C GeneID:851671
KEGG:sce:YDR097C CYGD:YDR097c NextBio:969292 Genevestigator:Q03834
GermOnline:YDR097C Uniprot:Q03834
Length = 1242
Score = 176 (67.0 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 40/99 (40%), Positives = 53/99 (53%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
+GKS ++ + IMAQ+GCYVP A D I TR+G ND+I STF +E+ E
Sbjct: 986 AGKSTILRMACIAVIMAQMGCYVPCESAVLTPIDRIMTRLGANDNIMQGKSTFFVELAET 1045
Query: 62 AHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYA 100
I+ T RSL++VDEL R G + L H A
Sbjct: 1046 KKILDMATNRSLLVVDELGRGGSSSDGFAIAESVLHHVA 1084
>TIGR_CMR|CBU_1056 [details] [associations]
symbol:CBU_1056 "DNA mismatch repair protein MutS"
species:227377 "Coxiella burnetii RSA 493" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_820057.2
ProteinModelPortal:Q83CQ2 SMR:Q83CQ2 PRIDE:Q83CQ2 GeneID:1208957
KEGG:cbu:CBU_1056 PATRIC:17930837
BioCyc:CBUR227377:GJ7S-1048-MONOMER Uniprot:Q83CQ2
Length = 859
Score = 174 (66.3 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y++Q AL+ ++A +G +VPA A+ D I+TRIG D + STF +EM E
Sbjct: 625 MGGKSTYMRQTALITLLAYIGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTE 684
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I+ T SL+L+DE+ R
Sbjct: 685 TAAILHNATEESLVLMDEVGR 705
>UNIPROTKB|J9NUN0 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074977 EMBL:AAEX03008217 EMBL:AAEX03008216
Ensembl:ENSCAFT00000043640 Uniprot:J9NUN0
Length = 725
Score = 173 (66.0 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
SGKS+Y+KQV L+ MA VG +VPA AE D I+TRI +SI STF +++ ++
Sbjct: 487 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 546
Query: 62 AHIIQFLTPRSLILVDE 78
A + T +SL+L+DE
Sbjct: 547 AKAVNNATKQSLVLIDE 563
>UNIPROTKB|A3KGM4 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00645968
SMR:A3KGM4 Ensembl:ENST00000427968 Ensembl:ENST00000458058
Uniprot:A3KGM4
Length = 727
Score = 173 (66.0 bits), Expect = 5.1e-12, P = 5.1e-12
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
SGKS+Y+KQV L+ MA VG +VPA AE D I+TRI +SI STF +++ ++
Sbjct: 596 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 655
Query: 62 AHIIQFLTPRSLILVDE 78
A + T +SL+L+DE
Sbjct: 656 AKAVNNATAQSLVLIDE 672
>UNIPROTKB|Q5SSQ8 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL662834 EMBL:CR936239
SUPFAM:SSF48334 EMBL:CR925765 UniGene:Hs.647011 HGNC:HGNC:7328
HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00797508 SMR:Q5SSQ8
Ensembl:ENST00000436559 Ensembl:ENST00000458144 UCSC:uc011iri.2
Uniprot:Q5SSQ8
Length = 821
Score = 173 (66.0 bits), Expect = 6.0e-12, P = 6.0e-12
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
SGKS+Y+KQV L+ MA VG +VPA AE D I+TRI +SI STF +++ ++
Sbjct: 613 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 672
Query: 62 AHIIQFLTPRSLILVDE 78
A + T +SL+L+DE
Sbjct: 673 AKAVNNATAQSLVLIDE 689
>RGD|1303008 [details] [associations]
symbol:Msh5 "mutS homolog 5 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=ISO;IBA] [GO:0003674
"molecular_function" evidence=ND] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0007127 "meiosis I"
evidence=ISO] [GO:0007129 "synapsis" evidence=ISO] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0007292
"female gamete generation" evidence=IEA;ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0008150
"biological_process" evidence=ND] [GO:0030983 "mismatched DNA
binding" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IRD] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 RGD:1303008 GO:GO:0005524 EMBL:BX883045
GO:GO:0006298 GO:GO:0030983 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 SUPFAM:SSF48334 KO:K08741 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 CTD:4439 HOVERGEN:HBG001449
OrthoDB:EOG4WSW8Z HOGENOM:HOG000006649 EMBL:BC083904
IPI:IPI00421996 RefSeq:NP_997701.2 UniGene:Rn.44043
ProteinModelPortal:Q6MG62 STRING:Q6MG62 PRIDE:Q6MG62
Ensembl:ENSRNOT00000060762 GeneID:294252 KEGG:rno:294252
UCSC:RGD:1303008 InParanoid:Q6MG62 NextBio:637830
Genevestigator:Q6MG62 GermOnline:ENSRNOG00000000857 Uniprot:Q6MG62
Length = 831
Score = 173 (66.0 bits), Expect = 6.1e-12, P = 6.1e-12
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
SGKS+Y+KQV L+ MA VG +VPA AE + D I+TRI +SI STF +++ ++
Sbjct: 593 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGVIDAIFTRIHSCESISLGLSTFMIDLNQV 652
Query: 62 AHIIQFLTPRSLILVDE 78
A + T SL+L+DE
Sbjct: 653 AKAVNNATEHSLVLIDE 669
>MGI|MGI:1329021 [details] [associations]
symbol:Msh5 "mutS homolog 5 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000795 "synaptonemal complex" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0007127 "meiosis I" evidence=IMP] [GO:0007129
"synapsis" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0007292 "female gamete generation"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
MGI:MGI:1329021 GO:GO:0005524 GO:GO:0005654 EMBL:AF109905
GO:GO:0006298 Reactome:REACT_120463 GO:GO:0030983 GO:GO:0007292
GO:GO:0007131 Reactome:REACT_27235 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
EMBL:AF397035 EMBL:AF397036 KO:K08741 GeneTree:ENSGT00550000074977
CTD:4439 HOVERGEN:HBG001449 OrthoDB:EOG4WSW8Z EMBL:AF146227
EMBL:AF107352 IPI:IPI00323518 RefSeq:NP_001139687.1
RefSeq:NP_038628.2 UniGene:Mm.24192 ProteinModelPortal:Q9QUM7
SMR:Q9QUM7 STRING:Q9QUM7 PhosphoSite:Q9QUM7 PRIDE:Q9QUM7
Ensembl:ENSMUST00000007250 Ensembl:ENSMUST00000097338 GeneID:17687
KEGG:mmu:17687 UCSC:uc008cfc.2 HOGENOM:HOG000006649
InParanoid:Q9QUM7 NextBio:292260 Bgee:Q9QUM7 CleanEx:MM_MSH5
Genevestigator:Q9QUM7 GermOnline:ENSMUSG00000007035 Uniprot:Q9QUM7
Length = 833
Score = 173 (66.0 bits), Expect = 6.2e-12, P = 6.2e-12
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
SGKS+Y+KQV L+ MA VG +VPA AE + D I+TRI +SI STF +++ ++
Sbjct: 595 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGVIDAIFTRIHSCESISLGLSTFMIDLNQV 654
Query: 62 AHIIQFLTPRSLILVDE 78
A + T SL+L+DE
Sbjct: 655 AKAVNNATEHSLVLIDE 671
>UNIPROTKB|O43196 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IRD] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0051026
"chiasma assembly" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007136 "meiotic prophase II" evidence=TAS]
[GO:0007126 "meiosis" evidence=TAS] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 EMBL:BA000025 EMBL:CH471081 EMBL:AF129756
EMBL:AL662899 EMBL:CR759787 GO:GO:0006298 Reactome:REACT_111183
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
EMBL:AL662834 GO:GO:0045143 EMBL:AF134726 EMBL:CR936239
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 EMBL:CR925765
KO:K08741 OMA:NDLVFFY EMBL:AF048986 EMBL:AF048991 EMBL:AF048988
EMBL:AF048989 EMBL:AF048990 EMBL:AF034759 EMBL:AF070071
EMBL:AF070079 EMBL:AF070072 EMBL:AF070073 EMBL:AF070074
EMBL:AF070075 EMBL:AF070076 EMBL:AF070077 EMBL:AF070078
EMBL:BT007200 EMBL:AY943816 EMBL:BC001358 EMBL:BC002498
EMBL:BC041031 IPI:IPI00172593 IPI:IPI00219362 IPI:IPI00297780
IPI:IPI00647584 RefSeq:NP_002432.1 RefSeq:NP_079535.4
RefSeq:NP_751897.1 RefSeq:NP_751898.1 UniGene:Hs.647011
ProteinModelPortal:O43196 SMR:O43196 IntAct:O43196 STRING:O43196
PhosphoSite:O43196 PRIDE:O43196 DNASU:4439 Ensembl:ENST00000375703
Ensembl:ENST00000375740 Ensembl:ENST00000375742
Ensembl:ENST00000375750 Ensembl:ENST00000375755
Ensembl:ENST00000416549 Ensembl:ENST00000419269
Ensembl:ENST00000427735 Ensembl:ENST00000435700
Ensembl:ENST00000436192 Ensembl:ENST00000441395
Ensembl:ENST00000441401 Ensembl:ENST00000448617
Ensembl:ENST00000456839 Ensembl:ENST00000457742
Ensembl:ENST00000497157 Ensembl:ENST00000534153
Ensembl:ENST00000578225 GeneID:4439 KEGG:hsa:4439 UCSC:uc003nwu.2
UCSC:uc003nwv.2 UCSC:uc003nwx.2 CTD:4439 GeneCards:GC06P031707
H-InvDB:HIX0165917 H-InvDB:HIX0166738 H-InvDB:HIX0167237
H-InvDB:HIX0167372 HGNC:HGNC:7328 MIM:603382 neXtProt:NX_O43196
PharmGKB:PA31136 HOVERGEN:HBG001449 OrthoDB:EOG4WSW8Z
PhylomeDB:O43196 ChiTaRS:MSH5 GenomeRNAi:4439 NextBio:17301
ArrayExpress:O43196 Bgee:O43196 CleanEx:HS_MSH5
Genevestigator:O43196 GermOnline:ENSG00000204410 GO:GO:0007136
Uniprot:O43196
Length = 834
Score = 173 (66.0 bits), Expect = 6.2e-12, P = 6.2e-12
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
SGKS+Y+KQV L+ MA VG +VPA AE D I+TRI +SI STF +++ ++
Sbjct: 596 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 655
Query: 62 AHIIQFLTPRSLILVDE 78
A + T +SL+L+DE
Sbjct: 656 AKAVNNATAQSLVLIDE 672
>UNIPROTKB|G4NEZ2 [details] [associations]
symbol:MGG_00704 "DNA mismatch repair protein msh6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CM001235
GO:GO:0006298 GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR017261 PIRSF:PIRSF037677 RefSeq:XP_003718302.1
ProteinModelPortal:G4NEZ2 EnsemblFungi:MGG_00704T0 GeneID:2675105
KEGG:mgr:MGG_00704 Uniprot:G4NEZ2
Length = 1218
Score = 175 (66.7 bits), Expect = 6.2e-12, P = 6.2e-12
Identities = 36/80 (45%), Positives = 50/80 (62%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
+GKS ++ + IMAQ+GCYVPA A D I +R+G ND+I STF +E+ E
Sbjct: 982 AGKSTVLRMSCIAVIMAQIGCYVPAVSARLTPVDRIMSRLGANDNIFAAQSTFFVELSET 1041
Query: 62 AHIIQFLTPRSLILVDELCR 81
I+ TPRSL+++DEL R
Sbjct: 1042 KKILSEATPRSLVILDELGR 1061
>UNIPROTKB|Q7S4J6 [details] [associations]
symbol:NCU08135 "DNA mismatch repair protein msh6"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
PIRSF:PIRSF037677 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
EMBL:AABX02000052 RefSeq:XP_959678.2 UniGene:Ncr.20761
ProteinModelPortal:Q7S4J6 STRING:Q7S4J6
EnsemblFungi:EFNCRT00000008326 GeneID:3875816 KEGG:ncr:NCU08135
Uniprot:Q7S4J6
Length = 1237
Score = 175 (66.7 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 36/80 (45%), Positives = 50/80 (62%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
+GKS ++ + IMAQ+GCYVPA A D I +R+G ND+I STF +E+ E
Sbjct: 1001 AGKSTILRMSCIAVIMAQIGCYVPAVSARLTPVDRIMSRLGANDNIFAAQSTFFVELSET 1060
Query: 62 AHIIQFLTPRSLILVDELCR 81
I+ TPRSL+++DEL R
Sbjct: 1061 KKILSEATPRSLVILDELGR 1080
>UNIPROTKB|F1PBG8 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
OMA:NDLVFFY GeneTree:ENSGT00550000074977 EMBL:AAEX03008217
EMBL:AAEX03008216 Ensembl:ENSCAFT00000000966 Uniprot:F1PBG8
Length = 857
Score = 173 (66.0 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 35/77 (45%), Positives = 50/77 (64%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
SGKS+Y+KQV L+ MA VG +VPA AE D I+TRI +SI STF +++ ++
Sbjct: 619 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 678
Query: 62 AHIIQFLTPRSLILVDE 78
A + T +SL+L+DE
Sbjct: 679 AKAVNNATKQSLVLIDE 695
>UNIPROTKB|A7MBK0 [details] [associations]
symbol:CDYL "CDYL protein" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] InterPro:IPR000953 InterPro:IPR001753
Pfam:PF00378 PROSITE:PS50013 SMART:SM00298 Pfam:PF00385
GO:GO:0005634 GO:GO:0003824 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG1024 InterPro:IPR017984 InterPro:IPR023780
InterPro:IPR023779 PRINTS:PR00504 PROSITE:PS00598
HOVERGEN:HBG006723 CTD:9425 OrthoDB:EOG4KPT9K
GeneTree:ENSGT00670000097595 EMBL:DAAA02055863 EMBL:DAAA02055864
EMBL:DAAA02055865 EMBL:DAAA02055866 EMBL:BC151603 IPI:IPI00867081
RefSeq:NP_001095693.1 UniGene:Bt.35764 SMR:A7MBK0
Ensembl:ENSBTAT00000021803 GeneID:539013 KEGG:bta:539013
InParanoid:A7MBK0 NextBio:20877725 Uniprot:A7MBK0
Length = 544
Score = 170 (64.9 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 36/79 (45%), Positives = 52/79 (65%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F TP+T G +P+GCS+V+FP+I G + A+E+L +GRKL AQEA G VS VF
Sbjct: 414 KAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPG 473
Query: 180 EIERDLWPRIHAWAKLSSC 198
+++ RI +L+SC
Sbjct: 474 TFTQEVMVRIK---ELASC 489
>ZFIN|ZDB-GENE-020905-3 [details] [associations]
symbol:msh6 "mutS homolog 6 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0045190 "isotype switching" evidence=IBA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 ZFIN:ZDB-GENE-020905-3 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0045190
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 GO:GO:0016446
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 HSSP:P23909 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
HOVERGEN:HBG000101 EMBL:AF412834 IPI:IPI00513357 UniGene:Dr.4108
ProteinModelPortal:Q90XA6 SMR:Q90XA6 STRING:Q90XA6
InParanoid:Q90XA6 ArrayExpress:Q90XA6 Uniprot:Q90XA6
Length = 1369
Score = 175 (66.7 bits), Expect = 7.1e-12, P = 7.1e-12
Identities = 36/81 (44%), Positives = 50/81 (61%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS ++Q L+ I+AQ+GCYVPA D ++TR+G +D I STF +E+ E
Sbjct: 1146 MGGKSTLMRQCGLVVILAQLGCYVPAESLRLTPVDRVFTRLGASDRIMSGESTFFVELSE 1205
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I+ T SL+L+DEL R
Sbjct: 1206 TASILLHATNHSLVLLDELGR 1226
>UNIPROTKB|B2XBK5 [details] [associations]
symbol:CDYL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] InterPro:IPR000953 InterPro:IPR001753
Pfam:PF00378 PROSITE:PS50013 SMART:SM00298 Pfam:PF00385
GO:GO:0005634 GO:GO:0003824 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOGENOM:HOG000111507 HOVERGEN:HBG006723 OMA:LVRCNMK
GeneTree:ENSGT00670000097595 EMBL:DAAA02055863 EMBL:DAAA02055864
EMBL:DAAA02055865 EMBL:DAAA02055866 IPI:IPI00867081
UniGene:Bt.35764 EMBL:EF687906 Ensembl:ENSBTAT00000063533
InParanoid:B2XBK5 Uniprot:B2XBK5
Length = 567
Score = 170 (64.9 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 36/79 (45%), Positives = 52/79 (65%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F TP+T G +P+GCS+V+FP+I G + A+E+L +GRKL AQEA G VS VF
Sbjct: 437 KAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPG 496
Query: 180 EIERDLWPRIHAWAKLSSC 198
+++ RI +L+SC
Sbjct: 497 TFTQEVMVRIK---ELASC 512
>UNIPROTKB|F1PML5 [details] [associations]
symbol:CDYL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] InterPro:IPR000953
InterPro:IPR001753 Pfam:PF00378 PROSITE:PS50013 SMART:SM00298
Pfam:PF00385 GO:GO:0005634 GO:GO:0003824 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 OMA:LVRCNMK GeneTree:ENSGT00670000097595
EMBL:AAEX03017491 EMBL:AAEX03017492 EMBL:AAEX03017493
Ensembl:ENSCAFT00000014981 Uniprot:F1PML5
Length = 567
Score = 170 (64.9 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 36/79 (45%), Positives = 52/79 (65%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F TP+T G +P+GCS+V+FP+I G + A+E+L +GRKL AQEA G VS VF
Sbjct: 437 KAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPG 496
Query: 180 EIERDLWPRIHAWAKLSSC 198
+++ RI +L+SC
Sbjct: 497 TFTQEVMVRIK---ELASC 512
>WB|WBGene00003422 [details] [associations]
symbol:msh-6 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0032301 "MutSalpha complex" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 174 (66.3 bits), Expect = 7.7e-12, P = 7.7e-12
Identities = 38/81 (46%), Positives = 50/81 (61%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS ++Q A+L I+A +G VPA D I+TRIG ND I C STF +E+KE
Sbjct: 965 MGGKSTLMRQTAVLAILAHIGSMVPAFSMRLTPIDRIFTRIGANDRIMCGESTFFIELKE 1024
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+++ T SL+LVDEL R
Sbjct: 1025 TDIMLKNATKHSLLLVDELGR 1045
>UNIPROTKB|Q9N3T8 [details] [associations]
symbol:msh-6 "Protein MSH-6" species:6239 "Caenorhabditis
elegans" [GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 174 (66.3 bits), Expect = 7.7e-12, P = 7.7e-12
Identities = 38/81 (46%), Positives = 50/81 (61%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS ++Q A+L I+A +G VPA D I+TRIG ND I C STF +E+KE
Sbjct: 965 MGGKSTLMRQTAVLAILAHIGSMVPAFSMRLTPIDRIFTRIGANDRIMCGESTFFIELKE 1024
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+++ T SL+LVDEL R
Sbjct: 1025 TDIMLKNATKHSLLLVDELGR 1045
>RGD|1549745 [details] [associations]
symbol:Cdyl "chromodomain protein, Y-like" species:10116 "Rattus
norvegicus" [GO:0004402 "histone acetyltransferase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=ISO]
InterPro:IPR000953 InterPro:IPR001753 Pfam:PF00378 PROSITE:PS50013
SMART:SM00298 Pfam:PF00385 RGD:1549745 GO:GO:0005634 GO:GO:0006355
GO:GO:0016573 GO:GO:0006351 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG1024 GO:GO:0004402 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 HOGENOM:HOG000111507 HOVERGEN:HBG006723 CTD:9425
OrthoDB:EOG4KPT9K GeneTree:ENSGT00670000097595 EMBL:BC079003
IPI:IPI00464737 RefSeq:NP_001014167.1 UniGene:Rn.146844 HSSP:Q9Y232
ProteinModelPortal:Q6AYK9 SMR:Q6AYK9 PhosphoSite:Q6AYK9
PRIDE:Q6AYK9 Ensembl:ENSRNOT00000048757 GeneID:361237
KEGG:rno:361237 UCSC:RGD:1549745 InParanoid:Q6AYK9 NextBio:675654
Genevestigator:Q6AYK9 Uniprot:Q6AYK9
Length = 589
Score = 170 (64.9 bits), Expect = 7.7e-12, P = 7.7e-12
Identities = 36/79 (45%), Positives = 52/79 (65%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F TP+T G +P+GCS+V+FP+I G + A+E+L +GRKL AQEA G VS VF
Sbjct: 459 KAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPG 518
Query: 180 EIERDLWPRIHAWAKLSSC 198
+++ RI +L+SC
Sbjct: 519 TFTQEVMVRIK---ELASC 534
>TIGR_CMR|APH_0857 [details] [associations]
symbol:APH_0857 "DNA mismatch repair protein MutS"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
RefSeq:YP_505434.1 STRING:Q2GJL7 GeneID:3930413 KEGG:aph:APH_0857
PATRIC:20950410 HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
BioCyc:APHA212042:GHPM-871-MONOMER PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 Uniprot:Q2GJL7
Length = 820
Score = 172 (65.6 bits), Expect = 7.7e-12, P = 7.7e-12
Identities = 33/81 (40%), Positives = 55/81 (67%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS +++Q AL+ ++A +G +VPA A + D I++R+G +D+I STF +EM E
Sbjct: 618 MAGKSTFLRQNALIAVLAHIGSFVPAEHAHIGVIDKIFSRVGASDNIALGHSTFMVEMVE 677
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I+ T +SL+++DE+ R
Sbjct: 678 TAAILNQATSKSLVILDEIGR 698
>UNIPROTKB|Q9Y232 [details] [associations]
symbol:CDYL "Chromodomain Y-like protein" species:9606
"Homo sapiens" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0004402 "histone acetyltransferase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0035064 "methylated histone residue binding" evidence=IDA]
[GO:0007283 "spermatogenesis" evidence=TAS] InterPro:IPR000953
InterPro:IPR001753 Pfam:PF00378 PROSITE:PS50013 SMART:SM00298
Pfam:PF00385 GO:GO:0005634 GO:GO:0006355 GO:GO:0016573
GO:GO:0007283 GO:GO:0006351 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG1024 GO:GO:0004402 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 HOVERGEN:HBG006723 EMBL:AF081258 EMBL:AF081259
EMBL:AK291601 EMBL:AK296985 EMBL:AL356747 EMBL:AL022725
EMBL:AL359643 EMBL:BC061516 EMBL:BC108725 EMBL:BC119682
EMBL:AL050164 IPI:IPI00293963 IPI:IPI00334502 IPI:IPI00655922
IPI:IPI00942198 PIR:T08789 RefSeq:NP_001137442.1
RefSeq:NP_001137443.1 RefSeq:NP_004815.3 UniGene:Hs.269092 PDB:2DNT
PDB:2GTR PDBsum:2DNT PDBsum:2GTR ProteinModelPortal:Q9Y232
SMR:Q9Y232 IntAct:Q9Y232 MINT:MINT-2829840 STRING:Q9Y232
PhosphoSite:Q9Y232 DMDM:150421527 PaxDb:Q9Y232 PRIDE:Q9Y232
Ensembl:ENST00000328908 Ensembl:ENST00000343762
Ensembl:ENST00000397588 Ensembl:ENST00000449732 GeneID:9425
KEGG:hsa:9425 UCSC:uc003mwi.3 UCSC:uc003mwj.3 CTD:9425
GeneCards:GC06P004706 HGNC:HGNC:1811 HPA:CAB012249 MIM:603778
neXtProt:NX_Q9Y232 PharmGKB:PA26356 OMA:LVRCNMK OrthoDB:EOG4KPT9K
PhylomeDB:Q9Y232 ChiTaRS:CDYL EvolutionaryTrace:Q9Y232
GenomeRNAi:9425 NextBio:35306 ArrayExpress:Q9Y232 Bgee:Q9Y232
CleanEx:HS_CDYL Genevestigator:Q9Y232 GermOnline:ENSG00000153046
Uniprot:Q9Y232
Length = 598
Score = 170 (64.9 bits), Expect = 7.9e-12, P = 7.9e-12
Identities = 36/79 (45%), Positives = 52/79 (65%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F TP+T G +P+GCS+V+FP+I G + A+E+L +GRKL AQEA G VS VF
Sbjct: 468 KAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPG 527
Query: 180 EIERDLWPRIHAWAKLSSC 198
+++ RI +L+SC
Sbjct: 528 TFTQEVMVRIK---ELASC 543
>UNIPROTKB|O66652 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224324 "Aquifex aeolicus VF5" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE000657 GenomeReviews:AE000657_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 PIR:H70327 RefSeq:NP_213212.1
ProteinModelPortal:O66652 GeneID:1192886 KEGG:aae:aq_308
PATRIC:20958222 HOGENOM:HOG000221406 OMA:ITQTVRD
BioCyc:AAEO224324:GJBH-228-MONOMER Uniprot:O66652
Length = 859
Score = 172 (65.6 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 32/81 (39%), Positives = 55/81 (67%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS YI+QV +L +++ +G ++PA A+ + D ++TRIG D + STF EM E
Sbjct: 610 MAGKSSYIRQVGVLTLLSHIGSFIPARRAKIPVVDALFTRIGSGDVLALGVSTFMNEMLE 669
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+++I+ T +SL+++DE+ R
Sbjct: 670 VSNILNNATEKSLVILDEVGR 690
>TAIR|locus:1005716529 [details] [associations]
symbol:MSH7 "AT3G24495" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP
catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000911 "cytokinesis by cell plate formation" evidence=RCA]
[GO:0006260 "DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0007067 "mitosis" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010389
"regulation of G2/M transition of mitotic cell cycle" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0016458 "gene silencing" evidence=RCA] [GO:0034968 "histone
lysine methylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009411 GO:GO:0003684 EMBL:AB020746
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR015536 PANTHER:PTHR11361:SF31 EMBL:AJ007792
EMBL:AF193018 EMBL:AF009657 IPI:IPI00538811 RefSeq:NP_850630.1
UniGene:At.6244 ProteinModelPortal:Q9SMV7 SMR:Q9SMV7 STRING:Q9SMV7
PaxDb:Q9SMV7 PRIDE:Q9SMV7 EnsemblPlants:AT3G24495.1 GeneID:822040
KEGG:ath:AT3G24495 GeneFarm:5083 TAIR:At3g24495
HOGENOM:HOG000030287 InParanoid:Q9SMV7 OMA:ELDEWRM PhylomeDB:Q9SMV7
ProtClustDB:CLSN2680110 Genevestigator:Q9SMV7 GermOnline:AT3G24495
Uniprot:Q9SMV7
Length = 1109
Score = 173 (66.0 bits), Expect = 9.0e-12, P = 9.0e-12
Identities = 36/81 (44%), Positives = 48/81 (59%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS ++ L I AQ+GCYVP E L D I+TR+G +D I STF +E E
Sbjct: 856 MGGKSTLLRATCLAVIFAQLGCYVPCESCEISLVDTIFTRLGASDRIMTGESTFLVECTE 915
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A ++Q T SL+++DEL R
Sbjct: 916 TASVLQNATQDSLVILDELGR 936
>UNIPROTKB|Q8N8U2 [details] [associations]
symbol:CDYL2 "Chromodomain Y-like protein 2" species:9606
"Homo sapiens" [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000953 InterPro:IPR001753 Pfam:PF00378
PROSITE:PS50013 SMART:SM00298 Pfam:PF00385 GO:GO:0005634
GO:GO:0003824 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG1024
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOGENOM:HOG000111507 HOVERGEN:HBG006723 EMBL:AY273798 EMBL:AK096185
EMBL:AC092332 EMBL:BC069440 EMBL:BC100803 EMBL:BC100804
EMBL:BC100805 EMBL:BC100806 IPI:IPI00178475 RefSeq:NP_689555.2
UniGene:Hs.373908 PDB:4HAE PDBsum:4HAE ProteinModelPortal:Q8N8U2
SMR:Q8N8U2 STRING:Q8N8U2 PhosphoSite:Q8N8U2 DMDM:229462825
PRIDE:Q8N8U2 DNASU:124359 Ensembl:ENST00000299564 GeneID:124359
KEGG:hsa:124359 UCSC:uc002ffs.3 CTD:124359 GeneCards:GC16M080637
H-InvDB:HIX0013264 HGNC:HGNC:23030 HPA:HPA041016 neXtProt:NX_Q8N8U2
PharmGKB:PA134903387 InParanoid:Q8N8U2 OMA:KRINPPL
OrthoDB:EOG437RDT PhylomeDB:Q8N8U2 ChiTaRS:CDYL2 GenomeRNAi:124359
NextBio:81257 Bgee:Q8N8U2 CleanEx:HS_CDYL2 Genevestigator:Q8N8U2
GermOnline:ENSG00000166446 Uniprot:Q8N8U2
Length = 506
Score = 168 (64.2 bits), Expect = 9.7e-12, P = 9.7e-12
Identities = 36/93 (38%), Positives = 54/93 (58%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F TP+ +TP GCSS FP+I G ++A+E+L+ GRKL AQEA G VS VF
Sbjct: 376 KAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQVFWPT 435
Query: 180 EIERDLWPRIHAWAKLSSCIVSLLAHLMRGILR 212
+++ R+ A S+ ++ L+R L+
Sbjct: 436 TFSQEVMLRVKEMASCSAVVLEESKCLVRSFLK 468
>UNIPROTKB|Q23K54 [details] [associations]
symbol:TTHERM_00194810 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
EMBL:GG662673 ProtClustDB:CLSZ2445539 RefSeq:XP_001017234.1
UniGene:Tth.3690 ProteinModelPortal:Q23K54 EnsemblProtists:EAR96989
GeneID:7830572 KEGG:tet:TTHERM_00194810 Uniprot:Q23K54
Length = 1232
Score = 173 (66.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 34/81 (41%), Positives = 52/81 (64%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS ++ ++ I+AQ+GCYVPA L D I+TRIG +D + STF +EM+E
Sbjct: 1006 MGGKSTTLRMACVMAILAQIGCYVPAKSLRMTLVDRIFTRIGASDKLMDGKSTFFIEMEE 1065
Query: 61 IAHIIQFLTPRSLILVDELCR 81
++ ++ + SLI++DEL R
Sbjct: 1066 TSNAVKQGSKHSLIIMDELGR 1086
>UNIPROTKB|A8J8E2 [details] [associations]
symbol:CHLREDRAFT_120228 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 InterPro:IPR015536
PANTHER:PTHR11361:SF31 EMBL:DS496143 RefSeq:XP_001697747.1
EnsemblPlants:EDO99899 GeneID:5723369 KEGG:cre:CHLREDRAFT_120228
ProtClustDB:CLSN2703491 Uniprot:A8J8E2
Length = 86
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 34/81 (41%), Positives = 48/81 (59%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS ++Q L I+AQVG +VPA D ++ R+G DSI STF +E+ E
Sbjct: 5 MGGKSTLLRQTCLAAILAQVGAWVPAESLTLSPVDSLFVRMGARDSIMTGQSTFFIELAE 64
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A ++ TP SL+++DEL R
Sbjct: 65 TAAMLARATPDSLVVLDELGR 85
>UNIPROTKB|F1PCA4 [details] [associations]
symbol:CDYL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] InterPro:IPR000953
InterPro:IPR001753 Pfam:PF00378 PROSITE:PS50013 SMART:SM00298
Pfam:PF00385 GO:GO:0005634 GO:GO:0003824 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 OMA:KRINPPL GeneTree:ENSGT00670000097595
EMBL:AAEX03004043 Ensembl:ENSCAFT00000031862 Uniprot:F1PCA4
Length = 533
Score = 168 (64.2 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 36/93 (38%), Positives = 54/93 (58%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F TP+ +TP GCSS FP+I G ++A+E+L+ GRKL AQEA G VS VF
Sbjct: 403 KAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQVFWPT 462
Query: 180 EIERDLWPRIHAWAKLSSCIVSLLAHLMRGILR 212
+++ R+ A S+ ++ L+R L+
Sbjct: 463 TFSQEVMLRVKEMASCSAVVLEESKCLVRSFLK 495
>TIGR_CMR|ECH_0824 [details] [associations]
symbol:ECH_0824 "DNA mismatch repair protein MutS"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_507620.1
ProteinModelPortal:Q2GG13 STRING:Q2GG13 GeneID:3926941
KEGG:ech:ECH_0824 PATRIC:20577070
BioCyc:ECHA205920:GJNR-827-MONOMER Uniprot:Q2GG13
Length = 804
Score = 170 (64.9 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS +++Q AL+ I+A +G +VPA A + D +++R+G +D+I STF +EM E
Sbjct: 617 MAGKSTFLRQNALIGILAHIGSFVPAQHAHIGVIDKVFSRVGASDNIASGHSTFMVEMTE 676
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A II T +S +++DE+ R
Sbjct: 677 TAAIINQATDKSFVILDEIGR 697
>UNIPROTKB|Q7SCW0 [details] [associations]
symbol:NCU09384 "Predicted protein" species:367110
"Neurospora crassa OR74A" [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 HSSP:Q56215 KO:K08741
OrthoDB:EOG4W6S4H EMBL:AABX02000082 RefSeq:XP_963830.1
ProteinModelPortal:Q7SCW0 STRING:Q7SCW0
EnsemblFungi:EFNCRT00000009472 GeneID:3879979 KEGG:ncr:NCU09384
OMA:INVICER Uniprot:Q7SCW0
Length = 506
Score = 167 (63.8 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 34/77 (44%), Positives = 49/77 (63%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
SGKS+Y+KQVAL+ +A +G YVP + A + D I+TR+ ++ + S F ++K+
Sbjct: 244 SGKSIYMKQVALIIYLAHIGSYVPVTRATIGVTDRIFTRVATRETAMDDESAFMTDLKQA 303
Query: 62 AHIIQFLTPRSLILVDE 78
A I F T RSLIL DE
Sbjct: 304 AFSINFATRRSLILADE 320
>ASPGD|ASPL0000041666 [details] [associations]
symbol:mshA species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 171 (65.3 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 35/80 (43%), Positives = 49/80 (61%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
+GKS ++ + IMAQVGCY+P A D I +R+G ND+I STF +E+ E
Sbjct: 946 AGKSTLLRMTCVAVIMAQVGCYLPCRSARLTPVDRIMSRLGANDNIFAAQSTFFVELSET 1005
Query: 62 AHIIQFLTPRSLILVDELCR 81
I+ TPRSL+++DEL R
Sbjct: 1006 KKILSEATPRSLVILDELGR 1025
>UNIPROTKB|Q5BCM2 [details] [associations]
symbol:AN1708.2 "Protein required for mismatch repair in
mitosis and meiosis (Eurofung)" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 171 (65.3 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 35/80 (43%), Positives = 49/80 (61%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
+GKS ++ + IMAQVGCY+P A D I +R+G ND+I STF +E+ E
Sbjct: 946 AGKSTLLRMTCVAVIMAQVGCYLPCRSARLTPVDRIMSRLGANDNIFAAQSTFFVELSET 1005
Query: 62 AHIIQFLTPRSLILVDELCR 81
I+ TPRSL+++DEL R
Sbjct: 1006 KKILSEATPRSLVILDELGR 1025
>UNIPROTKB|A2BEX3 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:BX248133
SMR:A2BEX3 Ensembl:ENST00000444225 Uniprot:A2BEX3
Length = 467
Score = 165 (63.1 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEM-KE 60
SGKS+Y+KQV L+ MA VG +VPA AE D I+TRI +SI STF +++ ++
Sbjct: 258 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQQ 317
Query: 61 IAHIIQFLTPRSLILVDE 78
+A + T +SL+L+DE
Sbjct: 318 VAKAVNNATAQSLVLIDE 335
>UNIPROTKB|Q9Y6F7 [details] [associations]
symbol:CDY2A "Testis-specific chromodomain protein Y 2"
species:9606 "Homo sapiens" [GO:0004402 "histone acetyltransferase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=TAS] InterPro:IPR000953
InterPro:IPR001753 Pfam:PF00378 PROSITE:PS50013 SMART:SM00298
Pfam:PF00385 GO:GO:0005634 GO:GO:0016573 GO:GO:0007283
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG1024 GO:GO:0004402
InterPro:IPR017984 InterPro:IPR023780 InterPro:IPR023779
PRINTS:PR00504 PROSITE:PS00598 HOGENOM:HOG000111507
HOVERGEN:HBG006723 KO:K00653 EMBL:AF080598 EMBL:AK292233
EMBL:BC069087 IPI:IPI00181285 RefSeq:NP_001001722.1
RefSeq:NP_004816.1 UniGene:Hs.251375 UniGene:Hs.532657 PDB:2FW2
PDBsum:2FW2 ProteinModelPortal:Q9Y6F7 SMR:Q9Y6F7 STRING:Q9Y6F7
PhosphoSite:Q9Y6F7 PaxDb:Q9Y6F7 PRIDE:Q9Y6F7 DNASU:203611
DNASU:9426 Ensembl:ENST00000250838 Ensembl:ENST00000382867
GeneID:203611 GeneID:9426 KEGG:hsa:203611 KEGG:hsa:9426
UCSC:uc004ftl.1 CTD:203611 CTD:9426 GeneCards:GC0YM019990
GeneCards:GC0YP020137 HGNC:HGNC:1810 HGNC:HGNC:23921 MIM:400018
neXtProt:NX_Q9Y6F7 PharmGKB:PA26355 InParanoid:Q9Y6F7
OrthoDB:EOG4640BP PhylomeDB:Q9Y6F7 EvolutionaryTrace:Q9Y6F7
NextBio:90458 ArrayExpress:Q9Y6F7 Bgee:Q9Y6F7 CleanEx:HS_CDY2A
CleanEx:HS_CDY2B Genevestigator:Q9Y6F7 GermOnline:ENSG00000129873
GermOnline:ENSG00000182415 Uniprot:Q9Y6F7
Length = 541
Score = 166 (63.5 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 34/89 (38%), Positives = 54/89 (60%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F TP+T G +P+GCSS+ FP++ G + A+E+L GRKL A+EA G VS VF T
Sbjct: 411 KAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTG 470
Query: 180 EIERDLWPRIHAWAKLSSCIVSLLAHLMR 208
+++ +I A ++ ++ L+R
Sbjct: 471 TFTQEVMIQIKELASYNAIVLEECKALVR 499
>UNIPROTKB|C9JMH9 [details] [associations]
symbol:CDY2A "Testis-specific chromodomain protein Y 2"
species:9606 "Homo sapiens" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000953 InterPro:IPR001753 Pfam:PF00378 PROSITE:PS50013
SMART:SM00298 Pfam:PF00385 GO:GO:0005634 GO:GO:0003824
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR017984
InterPro:IPR023780 InterPro:IPR023779 PRINTS:PR00504
PROSITE:PS00598 HOGENOM:HOG000111507 HGNC:HGNC:1810 HGNC:HGNC:23921
OrthoDB:EOG4640BP EMBL:AC009976 IPI:IPI00943174 SMR:C9JMH9
STRING:C9JMH9 Ensembl:ENST00000426790 Ensembl:ENST00000544303
Uniprot:C9JMH9
Length = 555
Score = 166 (63.5 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 34/89 (38%), Positives = 54/89 (60%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F TP+T G +P+GCSS+ FP++ G + A+E+L GRKL A+EA G VS VF T
Sbjct: 411 KAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTG 470
Query: 180 EIERDLWPRIHAWAKLSSCIVSLLAHLMR 208
+++ +I A ++ ++ L+R
Sbjct: 471 TFTQEVMIQIKELASYNAIVLEECKALVR 499
>UNIPROTKB|A2BEX2 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
EMBL:CR759915 UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449
ChiTaRS:MSH5 EMBL:BX248133 SMR:A2BEX2 Ensembl:ENST00000426512
Ensembl:ENST00000442688 Uniprot:A2BEX2
Length = 497
Score = 165 (63.1 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEM-KE 60
SGKS+Y+KQV L+ MA VG +VPA AE D I+TRI +SI STF +++ ++
Sbjct: 258 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQQ 317
Query: 61 IAHIIQFLTPRSLILVDE 78
+A + T +SL+L+DE
Sbjct: 318 VAKAVNNATAQSLVLIDE 335
>UNIPROTKB|Q9Y6F8 [details] [associations]
symbol:CDY1 "Testis-specific chromodomain protein Y 1"
species:9606 "Homo sapiens" [GO:0004402 "histone acetyltransferase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=TAS] InterPro:IPR000953
InterPro:IPR001753 Pfam:PF00378 PROSITE:PS50013 SMART:SM00298
Pfam:PF00385 GO:GO:0005634 GO:GO:0016573 GO:GO:0007283
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG1024 GO:GO:0004402
InterPro:IPR017984 InterPro:IPR023780 InterPro:IPR023779
PRINTS:PR00504 PROSITE:PS00598 EMBL:AF000981 EMBL:AF080597
EMBL:BC132929 EMBL:BC132955 IPI:IPI00069208 IPI:IPI00218948
RefSeq:NP_001003894.1 RefSeq:NP_001003895.1 RefSeq:NP_004671.1
RefSeq:NP_733841.1 UniGene:Hs.159281 UniGene:Hs.562095 PDB:2FBM
PDBsum:2FBM ProteinModelPortal:Q9Y6F8 SMR:Q9Y6F8 STRING:Q9Y6F8
PhosphoSite:Q9Y6F8 PaxDb:Q9Y6F8 PRIDE:Q9Y6F8
Ensembl:ENST00000306609 Ensembl:ENST00000306882
Ensembl:ENST00000361963 Ensembl:ENST00000382407 GeneID:253175
GeneID:9085 KEGG:hsa:253175 KEGG:hsa:9085 UCSC:uc004fvz.3
UCSC:uc004fwa.3 CTD:253175 CTD:9085 GeneCards:GC0YM026191
GeneCards:GC0YP027768 HGNC:HGNC:1809 HGNC:HGNC:23920 MIM:400016
neXtProt:NX_Q9Y6F8 PharmGKB:PA26354 HOGENOM:HOG000111507
HOVERGEN:HBG006723 KO:K00653 OMA:NERECEM PhylomeDB:Q9Y6F8
EvolutionaryTrace:Q9Y6F8 NextBio:92071 Bgee:Q9Y6F8 CleanEx:HS_CDY1
CleanEx:HS_CDY1B Genevestigator:Q9Y6F8 GermOnline:ENSG00000172288
GermOnline:ENSG00000172352 Uniprot:Q9Y6F8
Length = 540
Score = 164 (62.8 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 34/89 (38%), Positives = 53/89 (59%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F TP+T G +P+GCSS+ FP++ G + A+E+L GRKL A+EA G VS VF T
Sbjct: 410 KAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTG 469
Query: 180 EIERDLWPRIHAWAKLSSCIVSLLAHLMR 208
+++ +I A + ++ L+R
Sbjct: 470 TFTQEVMIQIKELASYNPIVLEECKALVR 498
>UNIPROTKB|A3KGM6 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 HOGENOM:HOG000006649
IPI:IPI00978527 SMR:A3KGM6 Ensembl:ENST00000416819 Uniprot:A3KGM6
Length = 728
Score = 165 (63.1 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEM-KE 60
SGKS+Y+KQV L+ MA VG +VPA AE D I+TRI +SI STF +++ ++
Sbjct: 596 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQQ 655
Query: 61 IAHIIQFLTPRSLILVDE 78
+A + T +SL+L+DE
Sbjct: 656 VAKAVNNATAQSLVLIDE 673
>CGD|CAL0001526 [details] [associations]
symbol:MSH2 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0032302 "MutSbeta complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032138 "single base insertion or deletion
binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 CGD:CAL0001526 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AACQ01000086 EMBL:AACQ01000085
eggNOG:COG0249 SUPFAM:SSF48334 KO:K08735 RefSeq:XP_715402.1
RefSeq:XP_715472.1 ProteinModelPortal:Q5A102 STRING:Q5A102
GeneID:3642853 GeneID:3642939 KEGG:cal:CaO19.10605
KEGG:cal:CaO19.3093 Uniprot:Q5A102
Length = 873
Score = 166 (63.5 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 37/82 (45%), Positives = 52/82 (63%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASL-AEFRLADHIYTRIGFNDSIECNASTFALEMK 59
M GKS YI+Q+ + +MAQVG ++PA+ AE + D I +R+G DS STF +EM
Sbjct: 638 MGGKSTYIRQIGTIALMAQVGSFIPANDGAELPIFDAILSRVGAGDSQLKGLSTFMIEML 697
Query: 60 EIAHIIQFLTPRSLILVDELCR 81
E + I+ T SLI++DEL R
Sbjct: 698 ETSSILATATANSLIIIDELGR 719
>UNIPROTKB|A3KGM5 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 HOGENOM:HOG000006649
IPI:IPI00893328 SMR:A3KGM5 Ensembl:ENST00000457917 Uniprot:A3KGM5
Length = 745
Score = 165 (63.1 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEM-KE 60
SGKS+Y+KQV L+ MA VG +VPA AE D I+TRI +SI STF +++ ++
Sbjct: 613 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQQ 672
Query: 61 IAHIIQFLTPRSLILVDE 78
+A + T +SL+L+DE
Sbjct: 673 VAKAVNNATAQSLVLIDE 690
>UNIPROTKB|A8JBH4 [details] [associations]
symbol:CHLREDRAFT_106717 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
EMBL:DS496153 RefSeq:XP_001699298.1 EnsemblPlants:EDO98728
GeneID:5724848 KEGG:cre:CHLREDRAFT_106717 Uniprot:A8JBH4
Length = 111
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 39/92 (42%), Positives = 54/92 (58%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPAS---LAEFR-LADHIYTRIGFN-------DSIEC 49
MSGKS Y++QV LL ++AQ GC VPA+ L F L + T +G D +E
Sbjct: 7 MSGKSTYLQQVGLLVVLAQAGCPVPAAHCCLPPFTALLGRLGTAMGGGAGAGGGADDLES 66
Query: 50 NASTFALEMKEIAHIIQFLTPRSLILVDELCR 81
S+F EM++ AH++ PRSL+L+DEL R
Sbjct: 67 GRSSFLTEMQDAAHVLSAAGPRSLVLLDELGR 98
>TIGR_CMR|SPO_0011 [details] [associations]
symbol:SPO_0011 "DNA mismatch repair protein MutS"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0005524 "ATP binding"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_165284.1
ProteinModelPortal:Q5LWH0 PRIDE:Q5LWH0 GeneID:3194479
KEGG:sil:SPO0011 PATRIC:23373251 Uniprot:Q5LWH0
Length = 877
Score = 164 (62.8 bits), Expect = 6.0e-11, P = 6.0e-11
Identities = 31/81 (38%), Positives = 52/81 (64%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS Y++Q AL+ ++AQ+G YVPA A + +++R+G +D + STF +EM E
Sbjct: 633 MAGKSTYLRQNALITLLAQIGSYVPADSAHIGVVSQLFSRVGASDDLARGRSTFMVEMVE 692
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I+ +L+++DE+ R
Sbjct: 693 TAAILNQADDHALVILDEIGR 713
>SGD|S000002313 [details] [associations]
symbol:MSH5 "Protein of the MutS family" species:4932
"Saccharomyces cerevisiae" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IEA;IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] [GO:0032300 "mismatch
repair complex" evidence=IRD] [GO:0003674 "molecular_function"
evidence=ND] [GO:0006298 "mismatch repair" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002313
GO:GO:0005524 EMBL:BK006938 GO:GO:0006298 GO:GO:0030983 EMBL:X97751
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 KO:K08741
GeneTree:ENSGT00550000074977 EMBL:L42517 EMBL:Z74202 PIR:S67702
RefSeq:NP_010127.1 ProteinModelPortal:Q12175 DIP:DIP-1457N
IntAct:Q12175 MINT:MINT-388063 STRING:Q12175 PRIDE:Q12175
EnsemblFungi:YDL154W GeneID:851401 KEGG:sce:YDL154W CYGD:YDL154w
HOGENOM:HOG000113662 OMA:SAFMIDL OrthoDB:EOG4W6S4H NextBio:968570
Genevestigator:Q12175 GermOnline:YDL154W Uniprot:Q12175
Length = 901
Score = 164 (62.8 bits), Expect = 6.3e-11, P = 6.3e-11
Identities = 33/77 (42%), Positives = 50/77 (64%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
SGKSVY+ Q L+ +AQ+GC+VPA A +AD I TRI +++ S+F L+ +++
Sbjct: 647 SGKSVYLTQNGLIVYLAQIGCFVPAERARIGIADKILTRIRTQETVYKTQSSFLLDSQQM 706
Query: 62 AHIIQFLTPRSLILVDE 78
A + T +SLIL+DE
Sbjct: 707 AKSLSLATEKSLILIDE 723
>UNIPROTKB|Q89VX1 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224911 "Bradyrhizobium japonicum USDA 110" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000040 GenomeReviews:BA000040_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:NP_767564.1
ProteinModelPortal:Q89VX1 GeneID:1049823 KEGG:bja:bll0924
PATRIC:21185344 BioCyc:BJAP224911:GJEJ-933-MONOMER Uniprot:Q89VX1
Length = 912
Score = 164 (62.8 bits), Expect = 6.4e-11, P = 6.4e-11
Identities = 31/81 (38%), Positives = 54/81 (66%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS +++Q AL+ ++AQ+G +VPA+ A + D +++R+G D + STF +EM E
Sbjct: 664 MAGKSTFLRQNALIALLAQIGSFVPATRARIGIIDRLFSRVGAADDLARGRSTFMVEMVE 723
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I+ R+L+++DE+ R
Sbjct: 724 TAAILNQAGERALVILDEIGR 744
>TAIR|locus:2095097 [details] [associations]
symbol:MSH2 "AT3G18524" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=ISS;IDA] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP catabolic
process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS;IMP] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0032302 "MutSbeta complex" evidence=IEA;IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IMP] [GO:0006290 "pyrimidine dimer repair"
evidence=IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016570 "histone modification" evidence=RCA] [GO:0031047 "gene
silencing by RNA" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0031507 "heterochromatin assembly"
evidence=RCA] [GO:0045787 "positive regulation of cell cycle"
evidence=RCA] [GO:0048449 "floral organ formation" evidence=RCA]
[GO:0048451 "petal formation" evidence=RCA] [GO:0048453 "sepal
formation" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] [GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005886 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003684 EMBL:AB026658 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 EMBL:AP001303
GO:GO:0008094 GO:GO:0006290 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 EMBL:AF026549 EMBL:AF109243
EMBL:AF002706 EMBL:AF003005 EMBL:U87911 IPI:IPI00526204
RefSeq:NP_566804.3 UniGene:At.10475 ProteinModelPortal:O24617
SMR:O24617 STRING:O24617 PaxDb:O24617 PRIDE:O24617
EnsemblPlants:AT3G18524.1 GeneID:821383 KEGG:ath:AT3G18524
TAIR:At3g18524 HOGENOM:HOG000196498 InParanoid:O24617 KO:K08735
OMA:WAISEHI PhylomeDB:O24617 ProtClustDB:CLSN2680872
Genevestigator:O24617 GermOnline:AT3G18524 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 Uniprot:O24617
Length = 937
Score = 164 (62.8 bits), Expect = 6.6e-11, P = 6.6e-11
Identities = 35/81 (43%), Positives = 50/81 (61%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS +I+QV ++ +MAQVG +VP A + D I+ R+G D STF EM E
Sbjct: 669 MGGKSTFIRQVGVIVLMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGVSTFMQEMLE 728
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I++ + +SLI++DEL R
Sbjct: 729 TASILKGASDKSLIIIDELGR 749
>UNIPROTKB|Q7RKG5 [details] [associations]
symbol:PY02936 "G/T mismatch binding protein-related"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
KO:K08737 InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 EMBL:AABL01000828
RefSeq:XP_730891.1 ProteinModelPortal:Q7RKG5 STRING:Q7RKG5
GeneID:3830116 KEGG:pyo:PY02936 EuPathDB:PlasmoDB:PY02936
Uniprot:Q7RKG5
Length = 1261
Score = 165 (63.1 bits), Expect = 7.5e-11, P = 7.5e-11
Identities = 31/81 (38%), Positives = 56/81 (69%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS ++Q A+ I+AQ+G +VP++ E + D I+TR+G +D++ STF +E+++
Sbjct: 1017 MGGKSTLLRQTAISVILAQIGAFVPSTYCELTIVDKIFTRLGSSDNLFEGKSTFLVELED 1076
Query: 61 IAHIIQFLTPRSLILVDELCR 81
I+++++ T SL ++DEL R
Sbjct: 1077 ISNLLKQSTKYSLAILDELGR 1097
>TAIR|locus:2092404 [details] [associations]
symbol:MSH5 "AT3G20475" species:3702 "Arabidopsis
thaliana" [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200
"ATP catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IMP] [GO:0051026 "chiasma assembly" evidence=IMP]
[GO:0006302 "double-strand break repair" evidence=RCA] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0007059 "chromosome
segregation" evidence=RCA] [GO:0007062 "sister chromatid cohesion"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0009691
"cytokinin biosynthetic process" evidence=RCA] [GO:0010332
"response to gamma radiation" evidence=RCA] [GO:0032204 "regulation
of telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0043247 "telomere
maintenance in response to DNA damage" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GO:GO:0003684 GO:GO:0030983 GO:GO:0008094 GO:GO:0051026
EMBL:AB024036 GO:GO:0045143 GO:GO:0043073 GO:GO:0000795
SUPFAM:SSF48334 GO:GO:0032300 GO:GO:0010777 EMBL:EF471448
EMBL:AK221687 EMBL:AK230222 EMBL:BT012280 IPI:IPI00532145
RefSeq:NP_188683.3 UniGene:At.50208 ProteinModelPortal:F4JEP5
SMR:F4JEP5 EnsemblPlants:AT3G20475.1 GeneID:821593
KEGG:ath:AT3G20475 TAIR:At3g20475 KO:K08741 OMA:NDLVFFY
Uniprot:F4JEP5
Length = 807
Score = 163 (62.4 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 48/170 (28%), Positives = 85/170 (50%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
SGKS+Y+KQVAL+ ++ +G +VPA A L D I+ +G + + STF +++ ++
Sbjct: 573 SGKSIYVKQVALIVFLSHIGSFVPADAATVGLTDRIFCAMG-SKFMTAEQSTFMIDLHQV 631
Query: 62 AHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLNHPVFVL-Q 120
+++ T RSL L+DE + + L G + H+A E + V+ H +L +
Sbjct: 632 GMMLRQATSRSLCLLDEFGKGTLTEDGIGLLGGTISHFATCAEPPRV-VVCTHLTELLNE 690
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYG 170
+ ++ T SVL P ++ E+++ R + Q L YG
Sbjct: 691 SCLPVSEKIKFYT----MSVLRPDTESANM-EEIVFLYRLIPGQTLLSYG 735
>ZFIN|ZDB-GENE-070912-561 [details] [associations]
symbol:cdyl "chromodomain protein, Y-like"
species:7955 "Danio rerio" [GO:0005634 "nucleus" evidence=IEA]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] InterPro:IPR000953
InterPro:IPR001753 Pfam:PF00378 PROSITE:PS50013 SMART:SM00298
Pfam:PF00385 ZFIN:ZDB-GENE-070912-561 GO:GO:0005634 GO:GO:0003824
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 GeneTree:ENSGT00670000097595
EMBL:BX649335 EMBL:BX677666 IPI:IPI00631148
Ensembl:ENSDART00000079131 Bgee:E7F6P0 Uniprot:E7F6P0
Length = 581
Score = 161 (61.7 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 38/93 (40%), Positives = 52/93 (55%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F TP+T G TP+ CSSV FP I G + A+E+L +GRKL AQEA G VS V
Sbjct: 451 KAWFQTPYTTFGQTPDACSSVTFPLIMGVASANEMLLSGRKLTAQEACAKGLVSQVLWPG 510
Query: 180 EIERDLWPRIHAWAKLSSCIVSLLAHLMRGILR 212
+++ RI +S ++ L+R I R
Sbjct: 511 TFTQEVMVRIKELVSCNSVVLRESKALVRNINR 543
>WB|WBGene00003418 [details] [associations]
symbol:msh-2 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0032301
"MutSalpha complex" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0032302 "MutSbeta complex" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IMP]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 KO:K08735 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 GeneTree:ENSGT00550000074867
OMA:HINERLD EMBL:FO080998 PIR:C87740 RefSeq:NP_491202.1
ProteinModelPortal:Q9TXR4 SMR:Q9TXR4 IntAct:Q9TXR4 MINT:MINT-227660
STRING:Q9TXR4 PaxDb:Q9TXR4 EnsemblMetazoa:H26D21.2.1
EnsemblMetazoa:H26D21.2.2 EnsemblMetazoa:H26D21.2.3 GeneID:171938
KEGG:cel:CELE_H26D21.2 UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2
InParanoid:Q9TXR4 NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 162 (62.1 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y++ AL ++AQ+G +VP S A + D I+TR+G +D STF EM +
Sbjct: 642 MGGKSTYLRSAALSILLAQIGSFVPCSSATISVVDGIFTRVGASDKQSQGISTFMAEMLD 701
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+ I+Q T S +++DEL R
Sbjct: 702 CSAILQRATKNSFVVIDELGR 722
>UNIPROTKB|Q9TXR4 [details] [associations]
symbol:msh-2 "Protein MSH-2" species:6239 "Caenorhabditis
elegans" [GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IBA] [GO:0010224 "response to UV-B" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006302 "double-strand break
repair" evidence=IBA] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0042771 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GeneTree:ENSGT00550000074867 OMA:HINERLD EMBL:FO080998 PIR:C87740
RefSeq:NP_491202.1 ProteinModelPortal:Q9TXR4 SMR:Q9TXR4
IntAct:Q9TXR4 MINT:MINT-227660 STRING:Q9TXR4 PaxDb:Q9TXR4
EnsemblMetazoa:H26D21.2.1 EnsemblMetazoa:H26D21.2.2
EnsemblMetazoa:H26D21.2.3 GeneID:171938 KEGG:cel:CELE_H26D21.2
UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2 InParanoid:Q9TXR4
NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 162 (62.1 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y++ AL ++AQ+G +VP S A + D I+TR+G +D STF EM +
Sbjct: 642 MGGKSTYLRSAALSILLAQIGSFVPCSSATISVVDGIFTRVGASDKQSQGISTFMAEMLD 701
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+ I+Q T S +++DEL R
Sbjct: 702 CSAILQRATKNSFVVIDELGR 722
>UNIPROTKB|Q7RQK0 [details] [associations]
symbol:PY01096 "MutS homolog 2-related" species:73239
"Plasmodium yoelii yoelii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 EMBL:AABL01000289 RefSeq:XP_728672.1
ProteinModelPortal:Q7RQK0 STRING:Q7RQK0 GeneID:3801212
KEGG:pyo:PY01096 EuPathDB:PlasmoDB:PY01096 Uniprot:Q7RQK0
Length = 853
Score = 162 (62.1 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 33/81 (40%), Positives = 52/81 (64%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+Q+A++ +MA +GC+VP++ A+ + I RIG +D STF EM E
Sbjct: 598 MGGKSTYIRQIAIISLMAHIGCFVPSTYAKIPIFSQIMCRIGSSDIQLKGISTFFSEMIE 657
Query: 61 IAHIIQFLTPRSLILVDELCR 81
++ II+ +L+++DEL R
Sbjct: 658 VSAIIKNADSDTLVIIDELGR 678
>UNIPROTKB|Q6L4V0 [details] [associations]
symbol:P0010D04.9 "Putative uncharacterized protein
P0010D04.9" species:39947 "Oryza sativa Japonica Group" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:AP008211 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
KO:K08741 EMBL:AC130605 RefSeq:NP_001055948.1 UniGene:Os.53982
GeneID:4339215 KEGG:osa:4339215 ProtClustDB:CLSN2695708
Uniprot:Q6L4V0
Length = 809
Score = 161 (61.7 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 39/112 (34%), Positives = 63/112 (56%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
SGKS+YIKQVAL+ +A +G +VPA A L D I+ +G + S+ STF +++ ++
Sbjct: 576 SGKSIYIKQVALVVFLAHIGSFVPADSAIVGLTDRIFCAMG-SKSMTSEQSTFMIDLHQV 634
Query: 62 AHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNRVLLN 113
+++ T RSL L+DE + + L G + H+ T +VLL+
Sbjct: 635 GTMLRHATSRSLCLLDEFGKGTLTEDGIGLLGGTISHF--TDYDCPPKVLLS 684
>UNIPROTKB|Q7R8N0 [details] [associations]
symbol:PY07191 "DNA mismatch repair protein msh2"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 EMBL:AABL01002579 RefSeq:XP_727998.1
ProteinModelPortal:Q7R8N0 STRING:Q7R8N0 GeneID:3800207
KEGG:pyo:PY07191 EuPathDB:PlasmoDB:PY07191 Uniprot:Q7R8N0
Length = 593
Score = 153 (58.9 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 35/81 (43%), Positives = 48/81 (59%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+Q+A++ I+AQ+G +VP E + I R+G +D STF EM E
Sbjct: 345 MGGKSTYIRQIAIICILAQIGMFVPCDFCEIPIFTQIMCRVGASDFQLKGISTFLSEMIE 404
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+ II+ SLI+VDEL R
Sbjct: 405 ASAIIKNADNNSLIIVDELGR 425
>WB|WBGene00001153 [details] [associations]
symbol:ech-4 species:6239 "Caenorhabditis elegans"
[GO:0000062 "fatty-acyl-CoA binding" evidence=IEA] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0019915 "lipid storage" evidence=IMP] [GO:0006635
"fatty acid beta-oxidation" evidence=IMP] InterPro:IPR000582
InterPro:IPR001753 Pfam:PF00378 Pfam:PF00887 PRINTS:PR00689
PROSITE:PS51228 GO:GO:0003824 Gene3D:1.20.80.10 InterPro:IPR014352
GO:GO:0000062 eggNOG:COG4281 SUPFAM:SSF47027 HSSP:P07107
GeneTree:ENSGT00670000097595 KO:K13239 OMA:RWLSDEC EMBL:Z46794
HOGENOM:HOG000027944 PIR:T23980 RefSeq:NP_496330.1
ProteinModelPortal:Q09603 SMR:Q09603 PaxDb:Q09603
EnsemblMetazoa:R06F6.9.1 EnsemblMetazoa:R06F6.9.2 GeneID:174665
KEGG:cel:CELE_R06F6.9 UCSC:R06F6.9 CTD:174665 WormBase:R06F6.9
InParanoid:Q09603 NextBio:884980 Uniprot:Q09603
Length = 385
Score = 149 (57.5 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 33/94 (35%), Positives = 53/94 (56%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A+FHTPF G +PEG SS FP I G+ ASE+L +K++AQ A YG V+ V
Sbjct: 256 KASFHTPFAPLGQSPEGVSSYTFPLIMGSLRASEMLLVCKKISAQTAKDYGLVNEVVPDA 315
Query: 180 EIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRD 213
E + + A+++L + + L+R + ++
Sbjct: 316 EFQSHAQKTVEAFSQLPPETLRINKKLLRSLHKE 349
>UNIPROTKB|Q0DJI9 [details] [associations]
symbol:Os05g0274200 "Os05g0274200 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005886 GO:GO:0005524
GO:GO:0003684 EMBL:AP008211 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0008094
GO:GO:0006311 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 KO:K08735 ProtClustDB:CLSN2680872
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 RefSeq:NP_001055070.2
UniGene:Os.18121 STRING:Q0DJI9 EnsemblPlants:LOC_Os05g19270.1
GeneID:4338271 KEGG:osa:4338271 Gramene:Q0DJI9 Uniprot:Q0DJI9
Length = 113
Score = 129 (50.5 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 10 QVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLT 69
QV + +MAQVG +VP A + D I+ R+G D STF EM E A I++ +
Sbjct: 15 QVGVNVLMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGAS 74
Query: 70 PRSLILVDELCR 81
+SLI++DEL R
Sbjct: 75 DKSLIIIDELGR 86
>TAIR|locus:2132233 [details] [associations]
symbol:MSH6 "AT4G02070" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006290 "pyrimidine dimer repair" evidence=IMP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 InterPro:IPR002999
GO:GO:0005524 GO:GO:0009411 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003684 EMBL:AL161493 SMART:SM00333 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
GO:GO:0006290 EMBL:AF001308 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
EMBL:AF001535 EMBL:AJ245967 IPI:IPI00528681 PIR:T01508
RefSeq:NP_192116.1 UniGene:At.34340 ProteinModelPortal:O04716
SMR:O04716 STRING:O04716 PaxDb:O04716 PRIDE:O04716
EnsemblPlants:AT4G02070.1 GeneID:828147 KEGG:ath:AT4G02070
TAIR:At4g02070 HOGENOM:HOG000243127 InParanoid:O04716 KO:K08737
OMA:YHMDAVI PhylomeDB:O04716 ProtClustDB:CLSN2685718
ArrayExpress:O04716 Genevestigator:O04716 GermOnline:AT4G02070
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 Uniprot:O04716
Length = 1324
Score = 151 (58.2 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 36/99 (36%), Positives = 50/99 (50%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS ++QV L I+AQ+G VPA E D I R+G D I STF E+ E
Sbjct: 1086 MGGKSTLLRQVCLAVILAQIGADVPAETFEVSPVDKICVRMGAKDHIMAGQSTFLTELSE 1145
Query: 61 IAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHY 99
A ++ T SL+++DEL R + L+H+
Sbjct: 1146 TAVMLTSATRNSLVVLDELGRGTATSDGQAIAESVLEHF 1184
>UNIPROTKB|A7UVX1 [details] [associations]
symbol:NCU10895 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 EMBL:AABX02000002
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
SUPFAM:SSF48334 OrthoDB:EOG4VHPFT RefSeq:XP_001728471.1
ProteinModelPortal:A7UVX1 EnsemblFungi:EFNCRT00000000709
GeneID:5847835 KEGG:ncr:NCU10895 Uniprot:A7UVX1
Length = 625
Score = 146 (56.5 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 28/61 (45%), Positives = 41/61 (67%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
MSGKS +I+ VAL+QIMAQ+G +VPA A + D ++ R+ +D+ E N TFA + +
Sbjct: 370 MSGKSTFIRSVALIQIMAQMGSFVPAQFASISICDRVFARVSTDDAPENNLGTFAQLLNK 429
Query: 61 I 61
I
Sbjct: 430 I 430
>WB|WBGene00007130 [details] [associations]
symbol:B0272.4 species:6239 "Caenorhabditis elegans"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0008152
"metabolic process" evidence=IEA] InterPro:IPR001753 Pfam:PF00378
GO:GO:0005777 GO:GO:0016853 eggNOG:COG1024
GeneTree:ENSGT00670000097595 EMBL:Z46240 PIR:T18687
RefSeq:NP_509583.1 UniGene:Cel.11537 ProteinModelPortal:P41942
SMR:P41942 DIP:DIP-24719N IntAct:P41942 MINT:MINT-1129094
STRING:P41942 PaxDb:P41942 EnsemblMetazoa:B0272.4 GeneID:181892
KEGG:cel:CELE_B0272.4 UCSC:B0272.4 CTD:181892 WormBase:B0272.4
HOGENOM:HOG000027944 InParanoid:P41942 OMA:QAGYVDD NextBio:915700
Uniprot:P41942
Length = 255
Score = 138 (53.6 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 33/88 (37%), Positives = 44/88 (50%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
ATF TPF G+ PE CSS PRI G+ A+ L+ K A EA G V+ +
Sbjct: 126 ATFATPFADIGVCPEACSSYTLPRIMGHQKAAALMMFSEKFTAHEAHIAGLVTQILPAAT 185
Query: 181 IERDLWPRIHAWAKLSSCIVSLLAHLMR 208
E+D I ++KLS + + LMR
Sbjct: 186 FEKDAKKIIDRYSKLSPITMKVAKELMR 213
>UNIPROTKB|A8JDD7 [details] [associations]
symbol:CHLREDRAFT_121781 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IRD]
InterPro:IPR000432 Pfam:PF00488 PROSITE:PS00486 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 EMBL:DS496161 RefSeq:XP_001700459.1 STRING:A8JDD7
EnsemblPlants:EDO98148 GeneID:5726009 KEGG:cre:CHLREDRAFT_121781
Uniprot:A8JDD7
Length = 96
Score = 122 (48.0 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
SGKS Y + VAL+ +A +G YVPA A LAD I R + TF ++ ++
Sbjct: 1 SGKSCYARAVALIAYLAHLGSYVPAQAATIGLADRIAARCA-TPPLGAATVTFMADLTQV 59
Query: 62 AHIIQFLTPRSLILVDE 78
+ +++ T R+L+++DE
Sbjct: 60 SAMLRTATERTLLVLDE 76
>UNIPROTKB|Q23AD6 [details] [associations]
symbol:TTHERM_00426230 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009411 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:GG662724 RefSeq:XP_001013801.1
UniGene:Tth.12031 ProteinModelPortal:Q23AD6
EnsemblProtists:EAR93556 GeneID:7834338 KEGG:tet:TTHERM_00426230
ProtClustDB:CLSZ2445539 Uniprot:Q23AD6
Length = 1139
Score = 145 (56.1 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 31/78 (39%), Positives = 46/78 (58%)
Query: 6 VYIKQVALLQIMAQV--GCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIAH 63
+Y + +++ Q+ GCYVPA EF L D I+TRIG D + STF +EM+E+ +
Sbjct: 927 IYFRNYQNFKLILQLKQGCYVPAEQCEFSLVDRIFTRIGAGDKLIEGKSTFYIEMEEVKN 986
Query: 64 IIQFLTPRSLILVDELCR 81
I + T S+ + DEL R
Sbjct: 987 SIMYGTYNSIAIFDELGR 1004
>UNIPROTKB|Q76DY7 [details] [associations]
symbol:mutS2 "MutS2 protein" species:274 "Thermus
thermophilus" [GO:0000400 "four-way junction DNA binding"
evidence=IDA] [GO:0004519 "endonuclease activity" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IMP] [GO:0030983 "mismatched DNA
binding" evidence=IDA] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR003593 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003684 GO:GO:0016887 GO:GO:0006298
GO:GO:0004519 GO:GO:0045910 SMART:SM00463 PROSITE:PS50828
GO:GO:0045005 SUPFAM:SSF48334 GO:GO:0000400 KO:K07456
PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069 EMBL:AB107662
RefSeq:YP_144911.1 ProteinModelPortal:Q76DY7 GeneID:3169358
KEGG:ttj:TTHA1645 Uniprot:Q76DY7
Length = 744
Score = 140 (54.3 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GK+ +K + L +MAQ G +V A A D +Y IG S++ N STFA ++
Sbjct: 318 MGGKTALLKTLGLAVLMAQSGLFVAAEKALLAWPDRVYADIGDEQSLQENLSTFAGHLRR 377
Query: 61 IAHIIQFLTPRSLILVDELCRAGIEP 86
+ +++ T SL+L+DEL +G +P
Sbjct: 378 LREMLEEATSHSLVLIDEL-GSGTDP 402
>WB|WBGene00003421 [details] [associations]
symbol:msh-5 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0051026
"chiasma assembly" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0045143 "homologous chromosome
segregation" evidence=IMP] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
KO:K08741 EMBL:AF271389 EMBL:Z73896 EMBL:AF070070 PIR:T20659
PIR:T20660 PIR:T43201 RefSeq:NP_502531.1 UniGene:Cel.19456
ProteinModelPortal:Q19272 STRING:Q19272 EnsemblMetazoa:F09E8.3
GeneID:178268 KEGG:cel:CELE_F09E8.3 UCSC:F09E8.3 CTD:178268
WormBase:F09E8.3 GeneTree:ENSGT00550000074977 HOGENOM:HOG000016447
InParanoid:Q19272 OMA:GRACRIY NextBio:900436 GermOnline:F09E8.3
Uniprot:Q19272
Length = 1369
Score = 140 (54.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 27/76 (35%), Positives = 49/76 (64%)
Query: 3 GKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIA 62
GKSVY+K + ++ ++ +G +VPA A+ + D I TR+ DS+ STFA +++++A
Sbjct: 644 GKSVYMKSIGIMVFLSHIGSFVPARHAKIGIVDRIVTRMFTVDSVLDGMSTFAKDVEQVA 703
Query: 63 HIIQFLTPRSLILVDE 78
++ T SL+++DE
Sbjct: 704 LALRKATGNSLVIIDE 719
>UNIPROTKB|Q19272 [details] [associations]
symbol:msh-5 "MutS protein homolog 5" species:6239
"Caenorhabditis elegans" [GO:0005634 "nucleus" evidence=IMP]
[GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0032300 "mismatch
repair complex" evidence=IRD] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 GO:GO:0008094
GO:GO:0051026 GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249
SUPFAM:SSF48334 KO:K08741 EMBL:AF271389 EMBL:Z73896 EMBL:AF070070
PIR:T20659 PIR:T20660 PIR:T43201 RefSeq:NP_502531.1
UniGene:Cel.19456 ProteinModelPortal:Q19272 STRING:Q19272
EnsemblMetazoa:F09E8.3 GeneID:178268 KEGG:cel:CELE_F09E8.3
UCSC:F09E8.3 CTD:178268 WormBase:F09E8.3
GeneTree:ENSGT00550000074977 HOGENOM:HOG000016447 InParanoid:Q19272
OMA:GRACRIY NextBio:900436 GermOnline:F09E8.3 Uniprot:Q19272
Length = 1369
Score = 140 (54.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 27/76 (35%), Positives = 49/76 (64%)
Query: 3 GKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIA 62
GKSVY+K + ++ ++ +G +VPA A+ + D I TR+ DS+ STFA +++++A
Sbjct: 644 GKSVYMKSIGIMVFLSHIGSFVPARHAKIGIVDRIVTRMFTVDSVLDGMSTFAKDVEQVA 703
Query: 63 HIIQFLTPRSLILVDE 78
++ T SL+++DE
Sbjct: 704 LALRKATGNSLVIIDE 719
>UNIPROTKB|Q720J7 [details] [associations]
symbol:mutS2 "MutS2 protein" species:265669 "Listeria
monocytogenes serotype 4b str. F2365" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR005747 InterPro:IPR007696 Pfam:PF00488
PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
Pfam:PF01713 INTERPRO:IPR002625 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AE017262 GenomeReviews:AE017262_GR GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456 OMA:HDQSSTG
ProtClustDB:PRK00409 PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_013840.1 ProteinModelPortal:Q720J7 STRING:Q720J7
GeneID:2799326 KEGG:lmf:LMOf2365_1241 PATRIC:20323712
Uniprot:Q720J7
Length = 785
Score = 137 (53.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 33/85 (38%), Positives = 50/85 (58%)
Query: 3 GKSVYIKQVALLQIMAQVGCYVPASL-AEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
GK++ +K + LL +MAQ G +PA + + +H++ IG SIE + STF+ M I
Sbjct: 340 GKTITLKTLGLLTLMAQSGLQIPAQEDSTIAVFEHVFADIGDEQSIEQSLSTFSSHMTNI 399
Query: 62 AHIIQFLTPRSLILVDELCRAGIEP 86
I+ + +SLIL DEL AG +P
Sbjct: 400 VSILGNVNQKSLILYDEL-GAGTDP 423
>UNIPROTKB|Q23YW9 [details] [associations]
symbol:TTHERM_00857890 "MutS domain II family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 Pfam:PF00488 Pfam:PF05192 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:GG662557 RefSeq:XP_001021931.1
ProteinModelPortal:Q23YW9 EnsemblProtists:EAS01686 GeneID:7832209
KEGG:tet:TTHERM_00857890 Uniprot:Q23YW9
Length = 1537
Score = 138 (53.6 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 3 GKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIA 62
GKS+ IK +A++QIMAQVGCYVPA L + I ++ DSIE S+F E++++
Sbjct: 1252 GKSILIKSIAIIQIMAQVGCYVPAKNGVISLKNLILSKFYTTDSIEEKQSSFTSELQQLD 1311
Query: 63 HIIQ 66
II+
Sbjct: 1312 FIIK 1315
Score = 36 (17.7 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
Identities = 5/10 (50%), Positives = 9/10 (90%)
Query: 71 RSLILVDELC 80
+++IL+DE C
Sbjct: 1341 KTIILIDEFC 1350
>UNIPROTKB|Q0JBW2 [details] [associations]
symbol:Os04g0507000 "Os04g0507000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 PROSITE:PS00486
SMART:SM00534 InterPro:IPR000305 Pfam:PF01541 GO:GO:0005739
GO:GO:0005524 GO:GO:0009507 GO:GO:0009411 GO:GO:0003684
EMBL:AP008210 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 SUPFAM:SSF82771 GO:GO:0000400
GO:GO:0032042 GO:GO:0032137 GO:GO:0000710 OMA:RGTETAK GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
RefSeq:NP_001053261.1 UniGene:Os.74427 STRING:Q0JBW2 PRIDE:Q0JBW2
EnsemblPlants:LOC_Os04g42784.1 GeneID:4336345 KEGG:osa:4336345
Gramene:Q0JBW2 ProtClustDB:CLSN2694915 Uniprot:Q0JBW2
Length = 1132
Score = 131 (51.2 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 41/133 (30%), Positives = 61/133 (45%)
Query: 3 GKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIA 62
GKS ++ V ++ G VPA+ A D I + DS S+F +EM EI
Sbjct: 770 GKSSMLRSVCAAALLGICGLMVPAASAVIPHFDSIMLHMKAYDSPADGKSSFQIEMSEIR 829
Query: 63 HIIQFLTPRSLILVDELCRAGIEPPPSCLPG---ERLDHYARTTEQVKNRVLLNHPVFVL 119
++ T RSL+L+DE+CR +C+ G ERLD+ + + H +F L
Sbjct: 830 SLVCRATARSLVLIDEICRGTETAKGTCIAGSIIERLDNVG-CIGIISTHL---HGIFDL 885
Query: 120 QATFH-TPFTLRG 131
+ H T F G
Sbjct: 886 PLSLHNTDFKAMG 898
>TIGR_CMR|GSU_0547 [details] [associations]
symbol:GSU_0547 "MutS2 family protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003684 GO:GO:0006298 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0030983 SMART:SM00463
PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334 HOGENOM:HOG000135096
KO:K07456 OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:NP_951605.1 ProteinModelPortal:Q74FQ9 GeneID:2685958
KEGG:gsu:GSU0547 PATRIC:22023851 ProtClustDB:CLSK827917
BioCyc:GSUL243231:GH27-531-MONOMER Uniprot:Q74FQ9
Length = 792
Score = 129 (50.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 33/85 (38%), Positives = 48/85 (56%)
Query: 3 GKSVYIKQVALLQIMAQVGCYVPA-SLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
GK++ +K LL +MA G VPA S + F L + IG SIE + STF+ + I
Sbjct: 353 GKTISLKTTGLLHLMALAGIPVPAASTSSFPLISDLLVDIGDEQSIEQSLSTFSAHVSNI 412
Query: 62 AHIIQFLTPRSLILVDELCRAGIEP 86
A I++ R+++L+DEL G EP
Sbjct: 413 AGILERADRRTVVLLDEL-GTGTEP 436
>ASPGD|ASPL0000060597 [details] [associations]
symbol:AN1078 species:162425 "Emericella nidulans"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0008152
"metabolic process" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001753 Pfam:PF00378 GO:GO:0003824
EMBL:AACD01000016 EMBL:BN001308 eggNOG:COG1024 HOGENOM:HOG000027948
OrthoDB:EOG4NPBCC RefSeq:XP_658682.1 ProteinModelPortal:Q5BEF2
EnsemblFungi:CADANIAT00001559 GeneID:2876851 KEGG:ani:AN1078.2
OMA:WILMSSE Uniprot:Q5BEF2
Length = 267
Score = 116 (45.9 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 29/69 (42%), Positives = 37/69 (53%)
Query: 111 LLNHPVFVL---QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEAL 167
L++H F+ A TPFT G+ EG SSV F + G A+E L GRK+ E
Sbjct: 121 LISHSDFIYAVSNAYLMTPFTSLGLVAEGGSSVAFVQRMGQGKANEALLLGRKIPVSELA 180
Query: 168 QYGFVSGVF 176
Q GFV+ VF
Sbjct: 181 QVGFVNKVF 189
>UNIPROTKB|Q3ABU1 [details] [associations]
symbol:mutS2 "MutS2 protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR003593
InterPro:IPR005747 InterPro:IPR007696 Pfam:PF00488
PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382 SMART:SM00533
SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625 GO:GO:0005524
GO:GO:0003824 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003684
GO:GO:0006281 GO:GO:0006298 GO:GO:0017111 GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
HSSP:P23909 eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456
OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_360393.1 ProteinModelPortal:Q3ABU1 STRING:Q3ABU1
GeneID:3727187 KEGG:chy:CHY_1564 PATRIC:21276253
BioCyc:CHYD246194:GJCN-1563-MONOMER Uniprot:Q3ABU1
Length = 777
Score = 122 (48.0 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 30/85 (35%), Positives = 47/85 (55%)
Query: 3 GKSVYIKQVALLQIMAQVGCYVPASL-AEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
GK+V +K + +L IMA+ G ++PAS E L +Y IG SI + STF+ + +
Sbjct: 333 GKTVTLKTIGILTIMARAGLFIPASPETEIGLFGEVYVDIGDEQSIVQSLSTFSSHLLNL 392
Query: 62 AHIIQFLTPRSLILVDELCRAGIEP 86
I++ L+L+DEL G +P
Sbjct: 393 KFILENAREGDLVLLDEL-GTGTDP 416
>TIGR_CMR|CHY_1564 [details] [associations]
symbol:CHY_1564 "DNA mismatch repair protein MutS"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR003593 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003824 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003684 GO:GO:0006281 GO:GO:0006298 GO:GO:0017111
GO:GO:0030983 SMART:SM00463 PROSITE:PS50828 GO:GO:0045005
SUPFAM:SSF48334 HSSP:P23909 eggNOG:COG1193 HOGENOM:HOG000135096
KO:K07456 OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_360393.1 ProteinModelPortal:Q3ABU1 STRING:Q3ABU1
GeneID:3727187 KEGG:chy:CHY_1564 PATRIC:21276253
BioCyc:CHYD246194:GJCN-1563-MONOMER Uniprot:Q3ABU1
Length = 777
Score = 122 (48.0 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 30/85 (35%), Positives = 47/85 (55%)
Query: 3 GKSVYIKQVALLQIMAQVGCYVPASL-AEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
GK+V +K + +L IMA+ G ++PAS E L +Y IG SI + STF+ + +
Sbjct: 333 GKTVTLKTIGILTIMARAGLFIPASPETEIGLFGEVYVDIGDEQSIVQSLSTFSSHLLNL 392
Query: 62 AHIIQFLTPRSLILVDELCRAGIEP 86
I++ L+L+DEL G +P
Sbjct: 393 KFILENAREGDLVLLDEL-GTGTDP 416
>TIGR_CMR|BA_4794 [details] [associations]
symbol:BA_4794 "MutS2 family protein" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF01713
INTERPRO:IPR002625 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003684 GO:GO:0006298 GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
HSSP:Q56215 RefSeq:NP_846997.1 RefSeq:YP_021440.1
RefSeq:YP_030694.1 ProteinModelPortal:Q81L40 IntAct:Q81L40
EnsemblBacteria:EBBACT00000011403 EnsemblBacteria:EBBACT00000013814
EnsemblBacteria:EBBACT00000023448 GeneID:1083920 GeneID:2815890
GeneID:2851606 KEGG:ban:BA_4794 KEGG:bar:GBAA_4794 KEGG:bat:BAS4447
eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456 OMA:HDQSSTG
ProtClustDB:PRK00409 BioCyc:BANT260799:GJAJ-4504-MONOMER
BioCyc:BANT261594:GJ7F-4656-MONOMER PANTHER:PTHR11361:SF14
TIGRFAMs:TIGR01069 Uniprot:Q81L40
Length = 786
Score = 121 (47.7 bits), Expect = 0.00012, P = 0.00012
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 3 GKSVYIKQVALLQIMAQVGCYVPA-SLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
GK+V +K V + +MAQ G ++P +E + +I+ IG SIE + STF+ M I
Sbjct: 340 GKTVTLKTVGICVLMAQSGLHIPVMDESEICVFKNIFADIGDEQSIEQSLSTFSSHMVNI 399
Query: 62 AHIIQFLTPRSLILVDELCRAGIEP 86
I++ SL+L DEL AG +P
Sbjct: 400 VDILEKADFESLVLFDEL-GAGTDP 423
>TAIR|locus:2087193 [details] [associations]
symbol:MSH1 "AT3G24320" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006298 "mismatch repair" evidence=ISS] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032042 "mitochondrial DNA metabolic process"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0000002 "mitochondrial genome
maintenance" evidence=IGI;IMP] [GO:0009408 "response to heat"
evidence=IGI] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016568 "chromatin modification" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0031047 "gene silencing
by RNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] [GO:0051726 "regulation of cell
cycle" evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 PROSITE:PS00486
SMART:SM00534 InterPro:IPR000305 Pfam:PF01541 GO:GO:0005739
GO:GO:0005524 GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0009411 GO:GO:0003684 GO:GO:0009408 EMBL:AP000382
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF82771 eggNOG:COG0249 GO:GO:0000400
GO:GO:0032042 GO:GO:0032137 GO:GO:0000710 EMBL:AY191303
IPI:IPI00526404 RefSeq:NP_189075.2 UniGene:At.43463 HSSP:Q56215
ProteinModelPortal:Q84LK0 SMR:Q84LK0 STRING:Q84LK0 PaxDb:Q84LK0
PRIDE:Q84LK0 EnsemblPlants:AT3G24320.1 GeneID:822021
KEGG:ath:AT3G24320 GeneFarm:4139 TAIR:At3g24320
HOGENOM:HOG000264796 InParanoid:Q84LK0 OMA:RGTETAK PhylomeDB:Q84LK0
ProtClustDB:CLSN2680862 Genevestigator:Q84LK0 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 Uniprot:Q84LK0
Length = 1118
Score = 121 (47.7 bits), Expect = 0.00018, P = 0.00018
Identities = 33/98 (33%), Positives = 47/98 (47%)
Query: 3 GKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEIA 62
GKS ++ + ++ G VPA A D I + DS S+F +EM EI
Sbjct: 773 GKSSLLRSICAAALLGISGLMVPAESACIPHFDSIMLHMKSYDSPVDGKSSFQVEMSEIR 832
Query: 63 HIIQFLTPRSLILVDELCRAGIEPPPSCLPG---ERLD 97
I+ T RSL+L+DE+CR +C+ G E LD
Sbjct: 833 SIVSQATSRSLVLIDEICRGTETAKGTCIAGSVVESLD 870
>RGD|1309548 [details] [associations]
symbol:Cdyl2 "chromodomain protein, Y-like 2" species:10116
"Rattus norvegicus" [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0035064 "methylated histone
residue binding" evidence=ISO] InterPro:IPR001753 Pfam:PF00378
RGD:1309548 GO:GO:0003824 GeneTree:ENSGT00670000097595
IPI:IPI00869666 Ensembl:ENSRNOT00000068440 Uniprot:F1LT42
Length = 110
Score = 94 (38.1 bits), Expect = 0.00023, P = 0.00023
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 141 LFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIV 200
L P +F A+E+L+ GRKL AQEA G VS VF +++ R+ A S+ ++
Sbjct: 4 LLPLLFQ---ANEMLFCGRKLTAQEACSRGLVSQVFWPTTFSQEVMLRVKEMASCSAVVL 60
Query: 201 SLLAHLMRGILR 212
L+R L+
Sbjct: 61 EDSKCLVRSFLK 72
>UNIPROTKB|Q81YJ6 [details] [associations]
symbol:BAS3289 "Putative MutS family protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000432 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0045005 SUPFAM:SSF48334
PANTHER:PTHR11361:SF14 RefSeq:NP_845823.1 RefSeq:YP_020182.1
RefSeq:YP_029546.1 ProteinModelPortal:Q81YJ6 DNASU:1084555
EnsemblBacteria:EBBACT00000012461 EnsemblBacteria:EBBACT00000013528
EnsemblBacteria:EBBACT00000020130 GeneID:1084555 GeneID:2814989
GeneID:2849196 KEGG:ban:BA_3547 KEGG:bar:GBAA_3547 KEGG:bat:BAS3289
HOGENOM:HOG000094825 OMA:KMNVREH ProtClustDB:CLSK865470
BioCyc:BANT260799:GJAJ-3351-MONOMER
BioCyc:BANT261594:GJ7F-3461-MONOMER Uniprot:Q81YJ6
Length = 633
Score = 117 (46.2 bits), Expect = 0.00027, P = 0.00027
Identities = 26/85 (30%), Positives = 47/85 (55%)
Query: 3 GKSVYIKQVALLQIMAQVGCYVPASL-AEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
GK++ +K + LL + G ++ E + ++++ IG N SIE STF+ MK +
Sbjct: 335 GKTIVLKTIGLLTLATMSGLHIAGDKETEIAIFENVFVDIGDNQSIENALSTFSSHMKNL 394
Query: 62 AHIIQFLTPRSLILVDELCRAGIEP 86
+ I++ +L+L DE+ +G EP
Sbjct: 395 SEIMRMSNNNTLLLFDEI-GSGTEP 418
>TIGR_CMR|BA_3547 [details] [associations]
symbol:BA_3547 "MutS family protein, putative"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0006259 "DNA metabolic
process" evidence=ISS] InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0045005 SUPFAM:SSF48334
PANTHER:PTHR11361:SF14 RefSeq:NP_845823.1 RefSeq:YP_020182.1
RefSeq:YP_029546.1 ProteinModelPortal:Q81YJ6 DNASU:1084555
EnsemblBacteria:EBBACT00000012461 EnsemblBacteria:EBBACT00000013528
EnsemblBacteria:EBBACT00000020130 GeneID:1084555 GeneID:2814989
GeneID:2849196 KEGG:ban:BA_3547 KEGG:bar:GBAA_3547 KEGG:bat:BAS3289
HOGENOM:HOG000094825 OMA:KMNVREH ProtClustDB:CLSK865470
BioCyc:BANT260799:GJAJ-3351-MONOMER
BioCyc:BANT261594:GJ7F-3461-MONOMER Uniprot:Q81YJ6
Length = 633
Score = 117 (46.2 bits), Expect = 0.00027, P = 0.00027
Identities = 26/85 (30%), Positives = 47/85 (55%)
Query: 3 GKSVYIKQVALLQIMAQVGCYVPASL-AEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
GK++ +K + LL + G ++ E + ++++ IG N SIE STF+ MK +
Sbjct: 335 GKTIVLKTIGLLTLATMSGLHIAGDKETEIAIFENVFVDIGDNQSIENALSTFSSHMKNL 394
Query: 62 AHIIQFLTPRSLILVDELCRAGIEP 86
+ I++ +L+L DE+ +G EP
Sbjct: 395 SEIMRMSNNNTLLLFDEI-GSGTEP 418
>TIGR_CMR|CHY_1601 [details] [associations]
symbol:CHY_1601 "3-hydroxybutyryl-CoA dehydratase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003859 "3-hydroxybutyryl-CoA dehydratase activity"
evidence=ISS] [GO:0019626 "short-chain fatty acid catabolic
process" evidence=ISS] InterPro:IPR001753 InterPro:IPR018376
Pfam:PF00378 PROSITE:PS00166 EMBL:CP000141
GenomeReviews:CP000141_GR eggNOG:COG1024 HOGENOM:HOG000027939
RefSeq:YP_360429.1 ProteinModelPortal:Q3ABQ5 STRING:Q3ABQ5
GeneID:3728032 KEGG:chy:CHY_1601 PATRIC:21276327 KO:K01715
OMA:GLNMDTE ProtClustDB:CLSK941304
BioCyc:CHYD246194:GJCN-1600-MONOMER GO:GO:0003859 Uniprot:Q3ABQ5
Length = 260
Score = 110 (43.8 bits), Expect = 0.00039, P = 0.00039
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F P G+T + PR+ G +A+ELLYTG ++AQEAL+ G V+ V E
Sbjct: 127 KAKFGQPEVGLGVTAGFGGTQRLPRLVGKGMAAELLYTGEMIDAQEALRIGLVNRVVEPE 186
Query: 180 EI---ERDLWPRIHAWAKLS 196
E+ ++ +I A AKL+
Sbjct: 187 ELMPTALEIAQKIAAKAKLA 206
>WB|WBGene00003420 [details] [associations]
symbol:msh-4 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] InterPro:IPR000432
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 GeneTree:ENSGT00550000074897
EMBL:FO081112 HSSP:Q56215 PIR:T16784 RefSeq:NP_495458.1
UniGene:Cel.32838 ProteinModelPortal:Q22103 SMR:Q22103
STRING:Q22103 EnsemblMetazoa:T02G5.6 GeneID:191708
KEGG:cel:CELE_T02G5.6 UCSC:T02G5.6 CTD:191708 WormBase:T02G5.6
InParanoid:Q22103 OMA:ESAHILR NextBio:950048 Uniprot:Q22103
Length = 107
Score = 90 (36.7 bits), Expect = 0.00065, P = 0.00065
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 41 IGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRA 82
+G ND + N S FA EM + A I+Q+ SL+++DEL R+
Sbjct: 1 MGHNDELIRNKSAFASEMSDAAAIVQYADKNSLVVLDELARS 42
>UNIPROTKB|Q22103 [details] [associations]
symbol:msh-4 "Protein MSH-4" species:6239 "Caenorhabditis
elegans" [GO:0051026 "chiasma assembly" evidence=IBA] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0030983 "mismatched DNA
binding" evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 GeneTree:ENSGT00550000074897
EMBL:FO081112 HSSP:Q56215 PIR:T16784 RefSeq:NP_495458.1
UniGene:Cel.32838 ProteinModelPortal:Q22103 SMR:Q22103
STRING:Q22103 EnsemblMetazoa:T02G5.6 GeneID:191708
KEGG:cel:CELE_T02G5.6 UCSC:T02G5.6 CTD:191708 WormBase:T02G5.6
InParanoid:Q22103 OMA:ESAHILR NextBio:950048 Uniprot:Q22103
Length = 107
Score = 90 (36.7 bits), Expect = 0.00065, P = 0.00065
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 41 IGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRA 82
+G ND + N S FA EM + A I+Q+ SL+++DEL R+
Sbjct: 1 MGHNDELIRNKSAFASEMSDAAAIVQYADKNSLVVLDELARS 42
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.137 0.415 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 223 223 0.00098 112 3 11 22 0.46 32
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 203
No. of states in DFA: 603 (64 KB)
Total size of DFA: 172 KB (2100 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.11u 0.09s 19.20t Elapsed: 00:00:10
Total cpu time: 19.13u 0.09s 19.22t Elapsed: 00:00:10
Start: Thu Aug 15 15:02:51 2013 End: Thu Aug 15 15:03:01 2013
WARNINGS ISSUED: 1