RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7339
(223 letters)
>gnl|CDD|215944 pfam00488, MutS_V, MutS domain V. This domain is found in proteins
of the MutS family (DNA mismatch repair proteins) and is
found associated with pfam01624, pfam05188, pfam05192
and pfam05190. The mutS family of proteins is named
after the Salmonella typhimurium MutS protein involved
in mismatch repair; other members of the family included
the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have
various roles in DNA repair and recombination. Human MSH
has been implicated in non-polyposis colorectal
carcinoma (HNPCC) and is a mismatch binding protein. The
aligned region corresponds with domain V of Thermus
aquaticus MutS as characterized in, which contains a
Walker A motif, and is structurally similar to the
ATPase domain of ABC transporters.
Length = 235
Score = 126 bits (320), Expect = 3e-36
Identities = 40/81 (49%), Positives = 56/81 (69%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y++QVAL+ IMAQ+G +VPA A + D I+TRIG +D + STF +EM E
Sbjct: 53 MGGKSTYLRQVALIVIMAQIGSFVPAESARIGIVDRIFTRIGASDDLASGRSTFMVEMLE 112
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A+I+ T +SL+++DEL R
Sbjct: 113 TANILHNATDKSLVILDELGR 133
>gnl|CDD|197777 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS
family.
Length = 185
Score = 124 bits (314), Expect = 6e-36
Identities = 44/81 (54%), Positives = 59/81 (72%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y++QVAL+ IMAQ+G +VPA AE + D I+TRIG +DS+ STF +EMKE
Sbjct: 9 MGGKSTYLRQVALIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKE 68
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A+I++ T SL+L+DEL R
Sbjct: 69 TANILKNATKNSLVLLDELGR 89
>gnl|CDD|213210 cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS
homologs. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family also possess a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 202
Score = 118 bits (297), Expect = 4e-33
Identities = 40/81 (49%), Positives = 53/81 (65%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y++ + L ++AQ+GC+VPA A L D I+TRIG DSI STF E+ E
Sbjct: 39 MGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLE 98
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+ I+ TPRSL+L+DEL R
Sbjct: 99 LKEILSLATPRSLVLIDELGR 119
>gnl|CDD|213249 cd03282, ABC_MSH4_euk, ATP-binding cassette domain of eukaryotic
MutS4 homolog. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family possess C-terminal domain with a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 204
Score = 114 bits (288), Expect = 7e-32
Identities = 42/81 (51%), Positives = 58/81 (71%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
MSGKS Y+KQ+ALL IMAQ+GC+VPA A + + + +R+ +DS+E N STFA EM E
Sbjct: 39 MSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSE 98
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A+I+ + SL+L+DEL R
Sbjct: 99 TAYILDYADGDSLVLIDELGR 119
>gnl|CDD|223327 COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 843
Score = 118 bits (298), Expect = 1e-30
Identities = 39/81 (48%), Positives = 55/81 (67%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y++QVAL+ I+AQ+G +VPA A + D I+TRIG D + STF +EM E
Sbjct: 617 MGGKSTYLRQVALIVILAQIGSFVPAEKARIGIVDRIFTRIGAADDLASGRSTFMVEMLE 676
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A+I+ T RSL+++DE+ R
Sbjct: 677 TANILDNATERSLVILDEIGR 697
>gnl|CDD|213251 cd03284, ABC_MutS1, ATP-binding cassette domain of MutS1 homolog.
The MutS protein initiates DNA mismatch repair by
recognizing mispaired and unpaired bases embedded in
duplex DNA and activating endo- and exonucleases to
remove the mismatch. Members of the MutS family possess
C-terminal domain with a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 216
Score = 108 bits (273), Expect = 2e-29
Identities = 41/81 (50%), Positives = 59/81 (72%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS Y++QVAL+ ++AQ+G +VPAS AE + D I+TRIG +D + STF +EM E
Sbjct: 40 MAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVE 99
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A+I+ T RSL+L+DE+ R
Sbjct: 100 TANILNNATERSLVLLDEIGR 120
>gnl|CDD|213254 cd03287, ABC_MSH3_euk, ATP-binding cassette domain of eukaryotic
MutS3 homolog. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family possess C-terminal domain with a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 222
Score = 106 bits (265), Expect = 2e-28
Identities = 42/81 (51%), Positives = 58/81 (71%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+QVAL+ IMAQ+G +VPAS A + D + TR+G +DSI+ STF +E+ E
Sbjct: 41 MGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSE 100
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+HI+ T RSL+++DEL R
Sbjct: 101 TSHILSNCTSRSLVILDELGR 121
>gnl|CDD|235444 PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.
Length = 854
Score = 107 bits (269), Expect = 8e-27
Identities = 39/81 (48%), Positives = 57/81 (70%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS Y++QVAL+ ++AQ+G +VPA A + D I+TRIG +D + STF +EM E
Sbjct: 617 MAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDRIFTRIGASDDLASGRSTFMVEMTE 676
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A+I+ T RSL+L+DE+ R
Sbjct: 677 TANILNNATERSLVLLDEIGR 697
>gnl|CDD|213248 cd03281, ABC_MSH5_euk, ATP-binding cassette domain of eukaryotic
MutS5 homolog. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family possess C-terminal domain with a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 213
Score = 101 bits (255), Expect = 9e-27
Identities = 32/77 (41%), Positives = 51/77 (66%)
Query: 2 SGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
SGKSVY+KQVAL+ +A +G +VPA A L D I+TR+ +S+ S F +++ ++
Sbjct: 40 SGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQV 99
Query: 62 AHIIQFLTPRSLILVDE 78
+ ++ T RSL+L+DE
Sbjct: 100 SKALRLATRRSLVLIDE 116
>gnl|CDD|213253 cd03286, ABC_MSH6_euk, ATP-binding cassette domain of eukaryotic
MutS6 homolog. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family possess C-terminal domain with a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 218
Score = 97.5 bits (243), Expect = 5e-25
Identities = 38/81 (46%), Positives = 50/81 (61%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS ++ V L IMAQ+G VPA L D I+TRIG D I STF +E+ E
Sbjct: 40 MGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSE 99
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A+I++ TP SL+++DEL R
Sbjct: 100 TANILRHATPDSLVILDELGR 120
>gnl|CDD|233259 TIGR01070, mutS1, DNA mismatch repair protein MutS. [DNA
metabolism, DNA replication, recombination, and repair].
Length = 840
Score = 97.2 bits (242), Expect = 2e-23
Identities = 39/81 (48%), Positives = 54/81 (66%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y++Q AL+ ++AQ+G +VPA AE L D I+TRIG +D + STF +EM E
Sbjct: 602 MGGKSTYMRQTALIALLAQIGSFVPAESAELPLFDRIFTRIGASDDLASGRSTFMVEMTE 661
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A+I+ T SL+L DE+ R
Sbjct: 662 AANILHNATENSLVLFDEIGR 682
>gnl|CDD|213252 cd03285, ABC_MSH2_euk, ATP-binding cassette domain of eukaryotic
MutS2 homolog. The MutS protein initiates DNA mismatch
repair by recognizing mispaired and unpaired bases
embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the MutS
family possess C-terminal domain with a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 222
Score = 90.9 bits (226), Expect = 1e-22
Identities = 37/81 (45%), Positives = 52/81 (64%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+Q+ ++ +MAQ+GC+VP A+ + D I R+G +DS STF EM E
Sbjct: 40 MGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVGASDSQLKGVSTFMAEMLE 99
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I++ T SLI++DEL R
Sbjct: 100 TAAILKSATENSLIIIDELGR 120
>gnl|CDD|213247 cd03280, ABC_MutS2, ATP-binding cassette domain of MutS2. MutS2
homologs in bacteria and eukaryotes. The MutS protein
initiates DNA mismatch repair by recognizing mispaired
and unpaired bases embedded in duplex DNA and activating
endo- and exonucleases to remove the mismatch. Members
of the MutS family also possess a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified in
most prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 200
Score = 80.0 bits (198), Expect = 1e-18
Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 2/87 (2%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPAS-LAEFRLADHIYTRIGFNDSIECNASTFALEMK 59
GK+V +K + LL +MAQ G +PA+ + + ++I+ IG SIE + STF+ MK
Sbjct: 38 AGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHMK 97
Query: 60 EIAHIIQFLTPRSLILVDELCRAGIEP 86
IA I+Q P SL+L+DEL +G +P
Sbjct: 98 NIARILQHADPDSLVLLDELG-SGTDP 123
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 76.4 bits (188), Expect = 4e-16
Identities = 50/146 (34%), Positives = 68/146 (46%), Gaps = 17/146 (11%)
Query: 3 GKSVYIKQVALLQIMAQVGCYVPASL-AEFRLADHIYTRIGFNDSIECNASTFALEMKEI 61
GK+V +K + LL +M Q G +PA+ +E + I+ IG SIE N STF+ MK I
Sbjct: 334 GKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNI 393
Query: 62 AHIIQFLTPRSLILVDELCRAGIEPPP-SCLPGERLDHYARTTEQVKNRVLLNHPVFVLQ 120
+ I+ T SL+L DEL AG +P S L L++ LL VL
Sbjct: 394 SAILSKTTENSLVLFDELG-AGTDPDEGSALAISILEY------------LLKQNAQVLI 440
Query: 121 ATFHTPFTLRGMTPEGC--SSVLFPR 144
T + EG +SVLF
Sbjct: 441 TTHYKELKALMYNNEGVENASVLFDE 466
>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase
superfamily. This superfamily contains a diverse set of
enzymes including enoyl-CoA hydratase, napthoate
synthase, methylmalonyl-CoA decarboxylase,
3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA
isomerase. Many of these play important roles in fatty
acid metabolism. In addition to a conserved structural
core and the formation of trimers (or dimers of
trimers), a common feature in this superfamily is the
stabilization of an enolate anion intermediate derived
from an acyl-CoA substrate. This is accomplished by two
conserved backbone NH groups in active sites that form
an oxyanion hole.
Length = 195
Score = 70.3 bits (173), Expect = 5e-15
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F P G+ P G + PR+ G + A ELL TGR+++A+EAL+ G V V EE
Sbjct: 124 AKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDEVVPDEE 183
Query: 181 IERDLWPRIHAWAK 194
L A+
Sbjct: 184 ----LLAAALELAR 193
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 68.9 bits (169), Expect = 1e-13
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 23/141 (16%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPA----SLAEFRLADHIYTRIGFNDSIECNASTFAL 56
GK+V +K + LL++MAQ G +PA L F I+ IG SIE + STF+
Sbjct: 327 TGGKTVTLKTLGLLRLMAQSGLPIPALEGSELPVF---VKIFADIGDEQSIEQSLSTFSS 383
Query: 57 EMKEIAHIIQFLTPRSLILVDELCRAGIEP-PPSCLPGERLDHYARTTEQVKNRVLLNHP 115
M I I++ SL+L DEL +G +P + L L+ LL P
Sbjct: 384 HMTNIVEILE--KADSLVLFDELG-SGTDPDEGAALAIAILED------------LLEKP 428
Query: 116 VFVLQATFHTPFTLRGMTPEG 136
++ T + EG
Sbjct: 429 AKIVATTHYRELKALAAEREG 449
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 68.3 bits (168), Expect = 2e-13
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 3 GKSVYIKQVALLQIMAQVGCYVPA----SLAEFRLADHIYTRIGFNDSIECNASTFALEM 58
GK+V +K + L +MA+ G +PA + F I+ IG SIE + STF+ M
Sbjct: 339 GKTVTLKTLGLAALMAKSGLPIPANEPSEIPVF---KEIFADIGDEQSIEQSLSTFSGHM 395
Query: 59 KEIAHIIQFLTPRSLILVDEL 79
I I++ SL+L DEL
Sbjct: 396 TNIVRILEKADKNSLVLFDEL 416
>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family. This family
contains a diverse set of enzymes including: Enoyl-CoA
hydratase. Napthoate synthase. Carnitate racemase.
3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA
delta-isomerase.
Length = 245
Score = 61.9 bits (151), Expect = 1e-11
Identities = 31/94 (32%), Positives = 42/94 (44%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F P G+ P + PRI G S A E+L TGR++ AQEAL+ G V V E+
Sbjct: 121 AKFGLPEVKLGIIPGAGGTQRLPRIIGVSAALEMLLTGRRIRAQEALKMGLVDKVVPEEQ 180
Query: 181 IERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDG 214
+ + A ++ L MR L D
Sbjct: 181 LVEEAIELAQRLADKPPLALAALKAAMRAALEDA 214
>gnl|CDD|213250 cd03283, ABC_MutS-like, ATP-binding cassette domain of MutS-like
homolog. The MutS protein initiates DNA mismatch repair
by recognizing mispaired and unpaired bases embedded in
duplex DNA and activating endo- and exonucleases to
remove the mismatch. Members of the MutS family possess
C-terminal domain with a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 199
Score = 60.4 bits (147), Expect = 2e-11
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
MSGKS +++ + + I+AQ G V AS E I+T I +D + S F E++
Sbjct: 35 MSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVK-IFTSIRVSDDLRDGISYFYAELRR 93
Query: 61 IAHIIQFLTPR--SLILVDELCR 81
+ I++ L L+DE+ +
Sbjct: 94 LKEIVEKAKKGEPVLFLLDEIFK 116
>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid
metabolism].
Length = 257
Score = 60.9 bits (148), Expect = 3e-11
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F P G+ P + PR+ G A ELL TG ++A EAL+ G V V E
Sbjct: 129 AKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDEVVPDAE 188
Query: 181 IERDLWPRIHAWAK 194
+L R A+
Sbjct: 189 ---ELLERALELAR 199
>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 58.7 bits (143), Expect = 2e-10
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
A F PF G+ P+ S L PR+ G + A+E+L G L+A+EAL+ G V+ V
Sbjct: 126 SAKFSLPFAKLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNRVVPAA 185
Query: 180 EIE 182
E++
Sbjct: 186 ELD 188
>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional.
Length = 296
Score = 58.5 bits (142), Expect = 3e-10
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 127 FTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLW 186
F RG+ PE SS PR+ G A E +Y+GR +AQEAL G V V + +L
Sbjct: 150 FGRRGIVPEAASSWFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPD----ELL 205
Query: 187 PRIHAWAK 194
P A A+
Sbjct: 206 PAARALAR 213
>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 53.2 bits (128), Expect = 2e-08
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F T F RG+ E S + PR+ G++ A +LL + R A+EAL+ G V+ V +E
Sbjct: 139 AKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDE 198
Query: 181 IERDLWPRIHAWA 193
L R A+A
Sbjct: 199 ----LMERTLAYA 207
>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional.
Length = 277
Score = 53.0 bits (128), Expect = 2e-08
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 136 GC---SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAW 192
G + L PRI G ASELLYTGR ++A+E ++GF + + EE+ A
Sbjct: 157 GADMGACALLPRIIGQGRASELLYTGRSMSAEEGERWGFFNRLVEPEELL----AEAQAL 212
Query: 193 AK 194
A+
Sbjct: 213 AR 214
>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 52.3 bits (126), Expect = 3e-08
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
A F F G+ P + L PRI G + A+E+ +TG ++A AL++G VS V +
Sbjct: 133 TARFAESFVKLGLIPGDGGAWLLPRIIGMARAAEMAFTGDAIDAATALEWGLVSRVVPAD 192
Query: 180 EIERDLWPRIHAWA 193
+ L P A A
Sbjct: 193 Q----LLPAARALA 202
>gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional.
Length = 251
Score = 48.2 bits (115), Expect = 6e-07
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
++ F TPF + PE SS+L PR+ G+ A LL G +A+ A + G + + E
Sbjct: 127 RSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLALGEGFSAEAAQEAGLIWKIVDEE 186
Query: 180 EIER 183
+E
Sbjct: 187 AVEA 190
>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase.
Length = 251
Score = 46.3 bits (110), Expect = 3e-06
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 172
A F P T + P + PR+ G S A EL++TGR++ A+EA G V
Sbjct: 119 AVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLV 170
>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional.
Length = 261
Score = 46.6 bits (111), Expect = 3e-06
Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A+F P G+ P+ + P+ ++A+E++ TGR+++A+EAL++G V+ V E
Sbjct: 125 ASFALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVNRVVPQAE 184
Query: 181 IERDLWPRIHAWAKL 195
L R A+
Sbjct: 185 ----LMDRARELAQQ 195
>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated.
Length = 260
Score = 46.3 bits (110), Expect = 4e-06
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F P G+TP + RI G A EL+YTG +NA+EAL+ G V+ V E
Sbjct: 127 KAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGLVNKVVEPE 186
Query: 180 EI 181
++
Sbjct: 187 KL 188
>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 45.9 bits (109), Expect = 4e-06
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F F G+ P+G S+ L PR+ G + A EL G KL A+ ALQ+G V+ V E
Sbjct: 134 AYFLQAFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKLPAETALQWGLVNRVVDDAE 193
Query: 181 IERDLWPRIHAWAK 194
L A
Sbjct: 194 ----LMAEAMKLAH 203
>gnl|CDD|236220 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional.
Length = 288
Score = 43.8 bits (104), Expect = 3e-05
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 146 FGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 182
G A ELL+TG +L A EA + G V+ V +E+E
Sbjct: 172 LGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELE 208
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 42.0 bits (99), Expect = 5e-05
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 25/94 (26%)
Query: 1 MSGKSVYIKQVALLQIMA----------QVGCYVPASLAEFRLADHIYTRIGFNDSIECN 50
SGKS + + L A + GC V A AE I+TR+
Sbjct: 31 GSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAEL-----IFTRLQ-------- 77
Query: 51 ASTFALEMKEIAHIIQFLT--PRSLILVDELCRA 82
S E+ +A I+ + PR L ++DE+ R
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRG 111
>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional.
Length = 263
Score = 42.8 bits (101), Expect = 6e-05
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGV 175
A F + P G S+V R +VA +LL TGR + A EA + G + V
Sbjct: 131 AKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEIGLIGHV 185
>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 41.5 bits (98), Expect = 1e-04
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
PRI G+ EL TGR ++A EA + G V+ V+ +
Sbjct: 162 PRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDAD 199
>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 40.5 bits (95), Expect = 3e-04
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 182
PR+ G A EL+YTGR+++AQEA + G V V +E
Sbjct: 150 PRLIGVGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLLE 189
>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 39.0 bits (91), Expect = 9e-04
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+ F F G+ P+ L R G + A+ L TG L A++AL+YGFV V +E
Sbjct: 128 KTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALTAEKALEYGFVYRVAESE 187
Query: 180 EIER 183
++E+
Sbjct: 188 KLEK 191
>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional.
Length = 258
Score = 38.8 bits (91), Expect = 0.001
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 131 GMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIH 190
G+ P SV P+ G A + TG L+A +AL+ G V+ V +E L PR
Sbjct: 135 GILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTEVVPHDE----LLPRAR 190
Query: 191 AWAKLSSCIVSLLAHLMRGIL---RDGHATT 218
+L++ I +R + DG A
Sbjct: 191 ---RLAASIAGNNPAAVRALKASYDDGAAAQ 218
>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional.
Length = 269
Score = 38.5 bits (90), Expect = 0.001
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 144 RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 182
+ G S A +L YT R+ +A EAL+ G V V +++E
Sbjct: 160 DLVGPSAAKDLFYTARRFDAAEALRIGLVHRVTAADDLE 198
>gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 38.1 bits (89), Expect = 0.002
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 130 RGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 172
RG+ G SV PR+ G + ++++ TGR +AQE + G
Sbjct: 132 RGIFVGGGGSVRVPRLIGVARMTDMMLTGRVYDAQEGERLGLA 174
>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional.
Length = 276
Score = 37.9 bits (88), Expect = 0.002
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 139 SVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVS 173
S L PR G+S A E++ TGR ++A+EA + G VS
Sbjct: 159 SYLLPRAIGSSRAFEIMLTGRDVDAEEAERIGLVS 193
>gnl|CDD|236205 PRK08259, PRK08259, enoyl-CoA hydratase; Provisional.
Length = 254
Score = 37.6 bits (88), Expect = 0.002
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 139 SVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGV 175
+V PR+ G+S A +L+ TGR ++A EAL G + V
Sbjct: 142 TVRLPRLIGHSRAMDLILTGRPVDADEALAIGLANRV 178
>gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 37.4 bits (87), Expect = 0.003
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 9/96 (9%)
Query: 120 QATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
+A F P GM P + PR+ G A ELL TG +A+ AL+ G V+ V E
Sbjct: 130 RALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIGLVNAVVPHE 189
Query: 180 EIERDLWPRIHAWAKL-----SSCIVSLLAHLMRGI 210
+L P A A+ + ++L + RG+
Sbjct: 190 ----ELLPAARALARRIIRHSPVAVAAILTAVTRGL 221
>gnl|CDD|236908 PRK11423, PRK11423, methylmalonyl-CoA decarboxylase; Provisional.
Length = 261
Score = 37.3 bits (87), Expect = 0.003
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 142 FPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE---RDLWPRIHAWAKLSSC 198
F G + E+ +T + AQ AL G ++ V EE+E + I A L+
Sbjct: 148 FTNDAGFHIVKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLA-- 205
Query: 199 IVSLLAHLMRGILRDGHATT 218
++++ +R +L + H
Sbjct: 206 -IAVIKEQLR-VLGEAHPMN 223
>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Activities include: enoyl-CoA hydratase (EC 4.2.1.17),
dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8),
3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadB. This model excludes the
FadJ family represented by SP:P77399 [Fatty acid and
phospholipid metabolism, Degradation].
Length = 714
Score = 37.5 bits (87), Expect = 0.004
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 126 PFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 182
P T G+ P +V PR+ G A E + +G++ A++AL+ G V V T +++
Sbjct: 138 PETKLGIMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAVVTADKLG 194
>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA
hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase.
Length = 275
Score = 37.2 bits (86), Expect = 0.004
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 142 FPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
P I G A EL TGR+ + EA + G VS VF ++E
Sbjct: 163 LPSIVGYGNAMELALTGRRFSGSEAKELGLVSRVFGSKE 201
>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 36.9 bits (86), Expect = 0.004
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI 181
PR G + A E++ T + EAL++G V+GVF E +
Sbjct: 147 PRYVGKAKALEMMLTSEPITGAEALKWGLVNGVFPEETL 185
>gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional.
Length = 256
Score = 36.9 bits (86), Expect = 0.005
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Query: 131 GMTPE---GCSSV----LFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGV 175
GM PE G SV L PR+ G + LL TG ++A +AL +G V V
Sbjct: 134 GM-PEVRVGIPSVIHAALLPRLIGWARTRWLLLTGETIDAAQALAWGLVDRV 184
>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 36.5 bits (85), Expect = 0.006
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 131 GMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
G+ P+G + G + A ++++ G+KL+A EAL G + V +
Sbjct: 139 GLIPDGGGHFFLQKRVGENKAKQIIWEGKKLSATEALDLGLIDEVIGGD 187
>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 36.4 bits (85), Expect = 0.007
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 140 VLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGV 175
V + VA EL YT R +A+EAL+ G V+ V
Sbjct: 152 VSLRGLVRKDVARELTYTARVFSAEEALELGLVTHV 187
>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated.
Length = 222
Score = 35.6 bits (82), Expect = 0.011
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 129 LRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 172
L G+ P G R G S A EL+++GR +A+EAL G +
Sbjct: 138 LAGLAPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLI 181
>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme
metabolism].
Length = 282
Score = 35.5 bits (82), Expect = 0.013
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 136 GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERD 184
G S RI G A E+ + R+ +A+EAL G V+ V ++E++
Sbjct: 162 GYGSSYLARIVGQKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKE 210
>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA
hydratase paaB. This family of proteins are found
within apparent operons for the degradation of
phenylacetic acid. These proteins contain the enoyl-CoA
hydratase domain as detected by pfam00378. This activity
is consistent with current hypotheses for the
degradation pathway which involve the ligation of
phenylacetate with coenzyme A (paaF), hydroxylation
(paaGHIJK), ring-opening (paaN) and degradation of the
resulting fatty acid-like compound to a Krebs cycle
intermediate (paaABCDE).
Length = 256
Score = 34.8 bits (80), Expect = 0.019
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F F G+ P+ + PR+ G + A L G KL+A+ A +G + V
Sbjct: 124 ARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGLIWQVVDDAA 183
Query: 181 I 181
+
Sbjct: 184 L 184
>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 34.6 bits (80), Expect = 0.023
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTT-E 179
F RG+ P G +++ FP+ G A L TG + +AQEAL+ G V V E
Sbjct: 123 TRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRYLLTGDEFDAQEALRLGLVQEVVPPGE 182
Query: 180 EIER--DLWPRIHAWAKL 195
++ER +L RI A L
Sbjct: 183 QLERAIELAERIARAAPL 200
>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional.
Length = 255
Score = 34.7 bits (80), Expect = 0.024
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 144 RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE-EIERDL 185
R G S+AS+++ TG + AQ+A Q G VS VF E +ER L
Sbjct: 146 RSVGKSLASQMVLTGESITAQQAQQAGLVSEVFPPELTLERAL 188
>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid
synthetase). This model represents an enzyme,
naphthoate synthase (dihydroxynaphthoic acid
synthetase), which is involved in the fifth step of the
menaquinone biosynthesis pathway. Together with
o-succinylbenzoate-CoA ligase (menE: TIGR01923), this
enzyme takes 2-succinylbenzoate and converts it into
1,4-di-hydroxy-2-naphthoate. Included above the trusted
cutoff are two enzymes from Arabadopsis thaliana and one
from Staphylococcus aureus which are identified as
putative enoyl-CoA hydratase/isomerases. These enzymes
group with the naphthoate synthases when building a tree
and when doing BLAST searches [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 259
Score = 34.1 bits (78), Expect = 0.034
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 136 GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIER 183
G S RI G A E+ + R+ +A++AL G V+ V ++E+
Sbjct: 143 GYGSSYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEK 190
>gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.
Length = 273
Score = 34.1 bits (79), Expect = 0.040
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 144 RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIER 183
RI G A E+ + R+ +AQEAL G V+ V ++E+
Sbjct: 161 RIVGQKKAREIWFLCRQYDAQEALDMGLVNTVVPLADLEK 200
>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 33.9 bits (78), Expect = 0.050
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
ATF P G+ PR G A ++ TGR++ A+E L+ GFV+ V E
Sbjct: 125 ATFALPEPRVGLAALAGGLHRLPRQIGLKRAMGMILTGRRVTAREGLELGFVNEVVPAGE 184
>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ.
Members represent alpha subunit of multifunctional
enzyme complex of the fatty acid degradation cycle.
Plays a minor role in aerobic beta-oxidation of fatty
acids. FadJI complex is necessary for anaerobic growth
on short-chain acids with nitrate as an electron
acceptor. Activities include: enoyl-CoA hydratase (EC
4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35),
3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A
representative is E. coli FadJ (aka YfcX). This model
excludes the FadB of TIGR02437 equivalog model [Fatty
acid and phospholipid metabolism, Degradation].
Length = 699
Score = 33.6 bits (77), Expect = 0.070
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 131 GMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGV 175
G+ P + PR+ G S A +++ TG++L A++AL+ G V V
Sbjct: 139 GLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGLVDDV 183
>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 33.0 bits (76), Expect = 0.072
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 146 FGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIER 183
G + ++L+T R L A+EAL G V+ V ++
Sbjct: 159 LGAARVKDMLFTARLLEAEEALAAGLVNEVVEDAALDA 196
>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase.
Length = 327
Score = 33.2 bits (76), Expect = 0.081
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 136 GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL--WPR 188
G S + R+ G A E+ + R A EAL+ G V+ V +E+E + W R
Sbjct: 207 GYGSSIMARLVGQKKAREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCR 261
>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase. Members
of this protein family are 2-ketocyclohexanecarboxyl-CoA
hydrolase, a ring-opening enzyme that acts in catabolism
of molecules such as benzoyl-CoA and cyclohexane
carboxylate. It converts -ketocyclohexanecarboxyl-CoA to
pimelyl-CoA. It is not sensitive to oxygen.
Length = 256
Score = 32.2 bits (73), Expect = 0.16
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 131 GMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDL 185
G G + L R+ G A E+ Y R+ AQEAL G V+ V ++++ ++
Sbjct: 135 GSVDPGYGTALLARVVGEKKAREIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEV 189
>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional.
Length = 254
Score = 32.3 bits (74), Expect = 0.16
Identities = 18/52 (34%), Positives = 23/52 (44%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 172
A F P RG+ G + PR +A EL TG L A+ A + G V
Sbjct: 122 AKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELGLV 173
>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 31.8 bits (73), Expect = 0.20
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F G+ P S + R G A T + +A EAL+ G V V E
Sbjct: 130 AVFCLSEVRLGLIPATISPYVI-RAMGERAARRYFLTAERFDAAEALRLGLVHEVVPAEA 188
>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA
hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA
hydratase, also called dienoyl-CoA hydratase, acts on
the product of benzoyl-CoA reductase (EC 1.3.99.15).
Benzoyl-CoA is a common intermediate in the degradation
of many aromatic compounds, and this enzyme is part of
an anaerobic pathway for dearomatization and
degradation.
Length = 251
Score = 31.8 bits (72), Expect = 0.23
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 138 SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGV 175
+S L P G A +LLY+GR ++ E + G + V
Sbjct: 136 ASCLLPERMGRVAAEDLLYSGRSIDGAEGARIGLANAV 173
>gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 31.6 bits (72), Expect = 0.25
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F P G+ P S R G + A +L TGR ++A EA + G VS V ++
Sbjct: 125 AKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAMDLCLTGRMMDAAEAERAGLVSRVVPADK 184
Query: 181 I 181
+
Sbjct: 185 L 185
>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional.
Length = 249
Score = 31.1 bits (71), Expect = 0.32
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 144 RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEI 181
R+ + L +T + A E +G V V +++
Sbjct: 145 RLVPQHLMRALFFTAATITAAELHHFGSVEEVVPRDQL 182
>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha
subunit, mitochondrial. Members represent alpha subunit
of mitochondrial multifunctional fatty acid degradation
enzyme complex. Subunit activities include: enoyl-CoA
hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA
dehydrogenase (EC 1.1.1.35). Some characterization in
human , pig , and rat. The beta subunit has activity:
acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Length = 737
Score = 31.3 bits (71), Expect = 0.36
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 125 TPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 172
P + G+ P + P++ G A +++ TG+K+ A A + G V
Sbjct: 145 LPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIRADRAKKMGIV 192
>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 715
Score = 31.0 bits (71), Expect = 0.46
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 139 SVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
+V PR+ G A E + G+ + A++AL+ G V V E+
Sbjct: 151 TVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEK 192
>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional.
Length = 249
Score = 30.5 bits (69), Expect = 0.58
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGV 175
A F F G+ P G ++ + R G VA L G + +A+ A+++G V
Sbjct: 126 ALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLALMV 180
>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional.
Length = 261
Score = 30.4 bits (69), Expect = 0.60
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 144 RIFGNSVASELLYTGRKLNAQEALQYGFVSGV 175
R G A + TG + A EAL G VS V
Sbjct: 152 RAVGKFKAMRMALTGCMVPAPEALAIGLVSEV 183
>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 29.1 bits (66), Expect = 1.8
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFV 172
A+F F G+ P+ + PR+ G + A L G KL+A++A Q+G +
Sbjct: 130 ASFIQAFVKIGLVPDSGGTWFLPRLVGMARALGLALLGEKLSAEQAEQWGLI 181
>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated.
Length = 302
Score = 28.8 bits (65), Expect = 2.0
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 136 GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 182
G S R G A E+ + GR +A+EA G V+ V E+E
Sbjct: 182 GYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELE 228
>gnl|CDD|201316 pfam00574, CLP_protease, Clp protease. The Clp protease has an
active site catalytic triad. In E. coli Clp protease,
ser-111, his-136 and asp-185 form the catalytic triad.
Cyanophora parodoxa clpP-B has lost all of these active
site residues and is therefore inactive. Some members
contain one or two large insertions.
Length = 182
Score = 28.3 bits (64), Expect = 2.3
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 161 LNAQEALQYGFVSGVFTTE 179
++A+EA +YG + V +
Sbjct: 164 MSAEEAKEYGLIDEVIESR 182
>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 708
Score = 29.1 bits (66), Expect = 2.3
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFV 172
PR+ G S A +++ TG++L A++AL+ G V
Sbjct: 156 PRLIGVSTALDMILTGKQLRAKQALKLGLV 185
>gnl|CDD|131673 TIGR02624, rhamnu_1P_ald, rhamnulose-1-phosphate aldolase. Members
of this family are the enzyme RhaD,
rhamnulose-1-phosphate aldolase.
Length = 270
Score = 28.6 bits (64), Expect = 2.6
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 87 PPSCLPGERLDHYARTTEQVKNRVLL-NHPVFVLQATFHTPFTLRGMTP---EGCSS--V 140
P S LP + H AR +NRV++ H ++ TF T + C+ V
Sbjct: 113 PTSELPAHFMSHIARLKVDPENRVIMHCHATNLIAMTFTHELDEAVFTRTLWQMCTECLV 172
Query: 141 LFP 143
+FP
Sbjct: 173 VFP 175
>gnl|CDD|234180 TIGR03356, BGL, beta-galactosidase.
Length = 426
Score = 28.3 bits (64), Expect = 3.2
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 75 LVDELCRAGIEP 86
LVDEL AGIEP
Sbjct: 98 LVDELLEAGIEP 109
>gnl|CDD|237133 PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit;
Reviewed.
Length = 207
Score = 28.0 bits (63), Expect = 3.6
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 161 LNAQEALQYGFVSGVFTTEE 180
L A+EA YG V + T+
Sbjct: 185 LTAEEAKDYGLVDQIITSYR 204
>gnl|CDD|236868 PRK11166, PRK11166, chemotaxis regulator CheZ; Provisional.
Length = 214
Score = 28.0 bits (63), Expect = 3.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 94 ERLDHYARTTEQVKNRVL 111
+RLD+ A+ TEQ RVL
Sbjct: 53 DRLDYVAQMTEQAAERVL 70
>gnl|CDD|146096 pfam03289, Pox_I1, Poxvirus protein I1.
Length = 312
Score = 27.7 bits (62), Expect = 5.0
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 45 DSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLD 97
S E N T+ LE +I +I L I++DE ++ I+ + E LD
Sbjct: 140 SSFEFNGHTYVLENDKIEELINQLVKNGAIILDE--KSSIKDSMYVIDDELLD 190
>gnl|CDD|132929 cd07018, S49_SppA_67K_type, Signal peptide peptidase A (SppA) 67K
type, a serine protease, has catalytic Ser-Lys dyad.
Signal peptide peptidase A (SppA; Peptidase S49;
Protease IV) 67K type: SppA is found in all three
domains of life and is involved in the cleavage of
signal peptides after their removal from the precursor
proteins by signal peptidases. Members in this subfamily
contain an amino-terminal domain in addition to the
carboxyl-terminal protease domain that is conserved in
all the S49 family members (sometimes referred to as 67K
type), similar to E. coli and Arabidopsis thaliana SppA
peptidases. Unlike the eukaryotic functional homologs
that are proposed to be aspartic proteases,
site-directed mutagenesis and sequence analysis have
shown that members in this subfamily, mostly bacterial,
are serine proteases. The predicted active site serine
for members in this family occurs in a transmembrane
domain. Mutagenesis studies also suggest that the
catalytic center comprises a Ser-Lys dyad (both residues
absolutely conserved within bacteria, chloroplast and
mitochondrial signal peptidase family members) and not
the usual Ser-His-Asp catalytic triad found in the
majority of serine proteases. Interestingly, the single
membrane spanning E. coli SppA carries out catalysis
using a Ser-Lys dyad with the serine located in the
conserved carboxy-terminal protease domain and the
lysine in the non-conserved amino-terminal domain.
Length = 222
Score = 27.5 bits (62), Expect = 5.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 161 LNAQEALQYGFVSGVFTTEEIERDL 185
+A+EAL+ G V G+ +E+E L
Sbjct: 196 DSAEEALEAGLVDGLAYRDELEARL 220
>gnl|CDD|233419 TIGR01450, recC, exodeoxyribonuclease V, gamma subunit. This model
describes the gamma subunit of exodeoxyribonuclease V.
Species containing this protein should also have the
alpha (TIGR01447) and beta (TIGR00609) subunits.
Candidates from Borrelia and from the Chlamydias differ
dramatically and score between trusted and noise cutoffs
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 1067
Score = 27.8 bits (62), Expect = 5.5
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 14/62 (22%)
Query: 81 RAGIEPPPSCLPGERLDHYARTT------EQVKNRVLLNHPVFVLQATFHTPFTLRGMTP 134
R E PPS L GE +D+ +T ++ R+ HP+ PF+ + P
Sbjct: 718 RDNSERPPSVLLGELIDYLVQTHYLAGDSARLAARLTEQHPL--------QPFSPQNFQP 769
Query: 135 EG 136
G
Sbjct: 770 GG 771
>gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein.
Length = 239
Score = 27.0 bits (60), Expect = 7.2
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 134 PEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
P+ ++L +I + ++L KL A+EA++ G V + E
Sbjct: 140 PDYFMALLRAKIGSPAARRDVLLRAAKLTAEEAVEMGIVDSAHDSAE 186
>gnl|CDD|223811 COG0740, ClpP, Protease subunit of ATP-dependent Clp proteases
[Posttranslational modification, protein turnover,
chaperones / Intracellular trafficking and secretion].
Length = 200
Score = 26.8 bits (60), Expect = 7.3
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 161 LNAQEALQYGFVSGVFTTEE 180
++A+EA +YG + V + E
Sbjct: 175 MSAEEAKEYGLIDKVIESRE 194
>gnl|CDD|177511 PHA03061, PHA03061, putative DNA-binding virion core protein;
Provisional.
Length = 311
Score = 26.9 bits (60), Expect = 7.9
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 45 DSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLD 97
S E N T+ LE +I +I L I++DE ++ I+ + E LD
Sbjct: 139 SSFEFNGHTYHLENDKIEDLINQLVKNGAIILDE--KSSIKDSMYVISDELLD 189
>gnl|CDD|226030 COG3499, COG3499, Phage protein U [General function prediction
only].
Length = 147
Score = 26.3 bits (58), Expect = 8.5
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 6/51 (11%)
Query: 138 SSVLFPRIFGNSVASELL----YTGRKLNAQEALQYGFVSGVFTTEEIERD 184
S VL+P G + + L TG L + G + G+F E IE
Sbjct: 53 SGVLYPEETGGESSLDALRALAETGTPLPLIDG--DGAIYGMFVIESIEET 101
>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase.
Length = 265
Score = 27.0 bits (60), Expect = 8.5
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 121 ATF---HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFT 177
A F H F G+ P S RI G + A E+ T L A+ A ++G V+ V
Sbjct: 130 AKFIDTHAKF---GIFPSWGLSQKLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVE 186
Query: 178 TEEI 181
E+
Sbjct: 187 ESEL 190
>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 27.0 bits (60), Expect = 9.2
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 12/84 (14%)
Query: 144 RIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRI----HAWAKLSSCI 199
R+FG+S+ ++ TG ++ A E + G + EE L P A S
Sbjct: 148 RLFGHSLTRRMMLTGYRVPAAELYRRGVIEACLPPEE----LMPEAMEIAREIASKSPLA 203
Query: 200 VSLLAHLMRGI----LRDGHATTQ 219
L + I LRDG+ Q
Sbjct: 204 TRLAKDALNTIENMSLRDGYRYEQ 227
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.137 0.415
Gapped
Lambda K H
0.267 0.0803 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,391,959
Number of extensions: 1068546
Number of successful extensions: 1159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1151
Number of HSP's successfully gapped: 96
Length of query: 223
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 130
Effective length of database: 6,812,680
Effective search space: 885648400
Effective search space used: 885648400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.6 bits)