RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7339
(223 letters)
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B*
3thy_B* 3thz_B*
Length = 918
Score = 117 bits (296), Expect = 1e-30
Identities = 42/81 (51%), Positives = 55/81 (67%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YIKQVAL+ IMAQ+G YVPA A + D I+TR+G D+I STF E+ +
Sbjct: 683 MGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTD 742
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A II+ T +SL+++DEL R
Sbjct: 743 TAEIIRKATSQSLVILDELGR 763
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic
hypermutat protein-DNA complex, DNA mispair, cancer;
HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B*
2o8e_B* 2o8f_B*
Length = 1022
Score = 117 bits (294), Expect = 2e-30
Identities = 38/81 (46%), Positives = 51/81 (62%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS ++Q LL +MAQ+GCYVPA + D ++TR+G +D I STF +E+ E
Sbjct: 799 MGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSE 858
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I+ T SL+LVDEL R
Sbjct: 859 TASILMHATAHSLVLVDELGR 879
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A*
2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Length = 934
Score = 117 bits (294), Expect = 2e-30
Identities = 38/81 (46%), Positives = 50/81 (61%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS YI+Q ++ +MAQ+GC+VP AE + D I R+G DS STF EM E
Sbjct: 672 MGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLE 731
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A I++ T SLI++DEL R
Sbjct: 732 TASILRSATKDSLIIIDELGR 752
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein,
mostly mixed alpha-beta structures, one domain is
entirely helical; HET: DNA; 2.20A {Thermus aquaticus}
SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A*
1fw6_A* 1ewr_A*
Length = 765
Score = 111 bits (279), Expect = 2e-28
Identities = 39/81 (48%), Positives = 57/81 (70%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M+GKS +++Q AL+ ++AQVG +VPA A L D IYTRIG +D + STF +EM+E
Sbjct: 586 MAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEE 645
Query: 61 IAHIIQFLTPRSLILVDELCR 81
+A I++ T SL+L+DE+ R
Sbjct: 646 VALILKEATENSLVLLDEVGR 666
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA
binding, DNA repair, mismatch recognition; HET: DNA ADP;
2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12
c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A*
1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Length = 800
Score = 110 bits (277), Expect = 5e-28
Identities = 37/81 (45%), Positives = 51/81 (62%)
Query: 1 MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
M GKS Y++Q AL+ +MA +G YVPA E D I+TR+G D + STF +EM E
Sbjct: 617 MGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTE 676
Query: 61 IAHIIQFLTPRSLILVDELCR 81
A+I+ T SL+L+DE+ R
Sbjct: 677 TANILHNATEYSLVLMDEIGR 697
>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid
metabolism, STR genomics, structural genomics
consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3
Length = 280
Score = 89.2 bits (222), Expect = 1e-21
Identities = 38/93 (40%), Positives = 57/93 (61%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
ATFHTPF+ G +PEGCSS FP+I + A+E+L G+KL A EA G V+ VF
Sbjct: 152 ATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDST 211
Query: 181 IERDLWPRIHAWAKLSSCIVSLLAHLMRGILRD 213
++++W R+ A+AKL + + ++R R+
Sbjct: 212 FQKEVWTRLKAFAKLPPNALRISKEVIRKRERE 244
>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold,
inter-trimer contacts; 2.10A {Saccharomyces cerevisiae}
SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A
Length = 280
Score = 86.6 bits (215), Expect = 1e-20
Identities = 15/64 (23%), Positives = 23/64 (35%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
PF G+ EG ++V P FG + E L + + GF+S F
Sbjct: 144 VYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPS 203
Query: 181 IERD 184
+
Sbjct: 204 SNAE 207
>2fbm_A Y chromosome chromodomain protein 1, telomeric IS;
acetyltransferase, structural genomics, structural
genomics consortium, SGC, unknown function; 2.28A {Homo
sapiens} SCOP: c.14.1.3
Length = 291
Score = 82.3 bits (204), Expect = 5e-19
Identities = 34/88 (38%), Positives = 52/88 (59%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F TP+T G +P+GCSS+ FP++ G + A+E+L GRKL A+EA G VS VF T
Sbjct: 150 AWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGT 209
Query: 181 IERDLWPRIHAWAKLSSCIVSLLAHLMR 208
+++ +I A + ++ L+R
Sbjct: 210 FTQEVMIQIKELASYNPIVLEECKALVR 237
>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics,
structural genomics consortium, SGC, unknown function;
1.90A {Homo sapiens} PDB: 2fw2_A
Length = 261
Score = 78.0 bits (193), Expect = 1e-17
Identities = 36/88 (40%), Positives = 53/88 (60%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F TP+T G +P+GCS+V+FP+I G + A+E+L +GRKL AQEA G VS VF
Sbjct: 132 AWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGT 191
Query: 181 IERDLWPRIHAWAKLSSCIVSLLAHLMR 208
+++ RI A + ++ L+R
Sbjct: 192 FTQEVMVRIKELASCNPVVLEESKALVR 219
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Length = 298
Score = 71.9 bits (177), Expect = 3e-15
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F F RG+ E S + PR+ +VA +LL +GR A+EA Q G V V T E+
Sbjct: 161 AKFAAVFARRGLIAEFGISWILPRLTSWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQ 220
Query: 181 IERDLWPRIHAWAK 194
L PR +A+
Sbjct: 221 ----LMPRALEYAE 230
>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus}
Length = 265
Score = 66.8 bits (164), Expect = 1e-13
Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
+ P G+ P+ + PR+ G +VA+ELL TG +AQ A++ G + +
Sbjct: 129 GRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLANRCLPAGK 188
Query: 181 IERDLWPRIHAWAK 194
+ A
Sbjct: 189 ----VLGAALRMAH 198
>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
marinum}
Length = 256
Score = 65.3 bits (160), Expect = 5e-13
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A PFT G+ PE SS L P++ G A+ LL + ++A+EAL+ G V + + EE
Sbjct: 130 ARLKCPFTSLGVAPEAASSYLLPQLVGRQNAAWLLMSSEWIDAEEALRMGLVWRICSPEE 189
Query: 181 IERDLWPRIHAWAK 194
L P A+
Sbjct: 190 ----LLPEARRHAE 199
>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2;
2.00A {Acinetobacter baumannii}
Length = 266
Score = 64.9 bits (159), Expect = 7e-13
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVF 176
A F PF G++PEG +S L + G A+ELL+T +K NA+ ALQ G V+ +
Sbjct: 130 ALFQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKKFNAETALQAGLVNEIV 185
>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural
genomics, PSI-2, protein ST initiative; 2.05A
{Streptomyces coelicolor A3}
Length = 279
Score = 60.3 bits (147), Expect = 3e-11
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 121 ATFHTPFTLRGMTPEGC-SSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
F FT G++ ++ L PR+ G A+ LL G + A EA + G +S +
Sbjct: 144 TRFAFLFTRVGLSGGDMGAAYLLPRVVGLGHATRLLMLGDTVRAPEAERIGLISELTEEG 203
Query: 180 EIERDLWPRIHAWAK 194
A+
Sbjct: 204 R----ADEAARTLAR 214
>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 1.60A {Mycobacterium
marinum M} PDB: 3q1t_A
Length = 272
Score = 60.3 bits (147), Expect = 3e-11
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 4/74 (5%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A T G+ +++ +P + G + A L T L+ +EA + G VS +E
Sbjct: 138 AKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVSTCVDDDE 197
Query: 181 IERDLWPRIHAWAK 194
+ P A+
Sbjct: 198 ----VLPTATRLAE 207
>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A
2q2x_A
Length = 243
Score = 58.7 bits (143), Expect = 8e-11
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
+ + T F G TP G +S++ G+ +A E++YTG +E + G V + ++
Sbjct: 121 SVYATNFMKYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFPVVSRQD 180
Query: 181 IERDLWPRIHAWAK 194
+ +
Sbjct: 181 ----VLNYAQQLGQ 190
>3gow_A PAAG, probable enoyl-COA hydratase; the spiral fold, the crotonase
superfamily, lyase; 1.85A {Thermus thermophilus HB8}
PDB: 3hrx_A
Length = 254
Score = 58.7 bits (143), Expect = 9e-11
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A+F T F G+ P+ S L PR+ G + A ELL +L+A+EAL G V V E+
Sbjct: 122 ASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELLLLSPRLSAEEALALGLVHRVVPAEK 181
Query: 181 IERDLWPRIHAWAK 194
L + AK
Sbjct: 182 ----LMEEALSLAK 191
>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics,
PSI-2, protein structure initiative; 1.70A {Bacillus
halodurans}
Length = 263
Score = 58.7 bits (143), Expect = 1e-10
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F F G++P+ +S PRI G LL G+ ++EAL+ G + + ++
Sbjct: 132 AKFLENFHKMGISPDLGASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEICENKQ 191
Query: 181 IERDLWPRIHAWAK 194
+L R+ + K
Sbjct: 192 ---ELQERVKNYLK 202
>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.35A {Mycobacterium abscessus}
Length = 290
Score = 58.4 bits (142), Expect = 2e-10
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 121 ATFHTPFTLRGMTP-EGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
A F G+T E S L PR G S AS+++ TGR ++A EA + G VS +E
Sbjct: 154 AYFRAAGINNGLTASELGLSYLLPRAIGTSRASDIMLTGRDVDADEAERIGLVSRKVASE 213
Query: 180 EIERDLWPRIHAWAK 194
L +A +
Sbjct: 214 S----LLEECYAIGE 224
>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center
for infectious disease, S coenzyme A, tuberculosis;
2.05A {Mycobacterium avium}
Length = 255
Score = 58.0 bits (141), Expect = 2e-10
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
+ F FT G+ P+G +S L P + G + S + T K++A A ++G +S + + +E
Sbjct: 123 SYFQLAFTRVGLMPDGGASALLPLLIGRARTSRMAMTAEKISAATAFEWGMISHITSADE 182
Query: 181 IERDLWPRIHAWAK 194
+ +
Sbjct: 183 ----YESVLTDVLR 192
>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium smegmatis} PDB:
3njb_A
Length = 333
Score = 57.9 bits (140), Expect = 3e-10
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A P P ++ L+ G+ A LL+TG + +A ++G +
Sbjct: 188 AKIGYPPMRVWGVP---AAGLWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPAD 244
Query: 181 IERDLWPRIHAWAK 194
++ R +
Sbjct: 245 LD----ARTERLVE 254
>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET:
BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A*
1nzy_B*
Length = 269
Score = 57.2 bits (139), Expect = 3e-10
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F + G+ + +S RI G A EL+ T R L +EA +G VS V+ +E
Sbjct: 131 AKFVCAWHTIGIGNDTATSYSLARIVGMRRAMELMLTNRTLYPEEAKDWGLVSRVYPKDE 190
Query: 181 IERDLWPRIHAWAK 194
A+
Sbjct: 191 ----FREVAWKVAR 200
>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A
{Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A
Length = 257
Score = 56.5 bits (137), Expect = 5e-10
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 121 ATF-HTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
ATF P G+ P + V++P + G++ L TG++L+A+ AL YG V+ V + +
Sbjct: 138 ATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNEVLSEQ 197
Query: 180 EIERDLWPRIHAWAK 194
E L PR A+
Sbjct: 198 E----LLPRAWELAR 208
>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038,
NPPSFA, national project on prote structural and
functional analyses; 2.00A {Geobacillus kaustophilus}
Length = 257
Score = 56.4 bits (137), Expect = 7e-10
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A+F F G+ P+ PR+ G + A EL G K+ A+EA G + V +
Sbjct: 125 ASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALELAVLGEKVTAEEAAALGLATKVIPLSD 184
Query: 181 IERDLWPRIHAWAK 194
+ +A+
Sbjct: 185 ----WEEEVKQFAE 194
>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura
genomics, seattle structural genomics center for
infectious lyase; 1.75A {Mycobacterium marinum M}
Length = 233
Score = 56.1 bits (136), Expect = 7e-10
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 4/74 (5%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
GMT + + S + + + AL GF+ + E
Sbjct: 126 YNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGLAKTFFGETALAAGFIDEISLPEV 185
Query: 181 IERDLWPRIHAWAK 194
+ R A+
Sbjct: 186 ----VLSRAEEAAR 195
>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase,
lyase, crotonase, biocatalysis, beta-diketone; 1.46A
{Anabaena SP} PDB: 2j5s_A* 2j5g_D
Length = 263
Score = 54.9 bits (133), Expect = 2e-09
Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 121 ATFH-TPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTE 179
F P G+ P +L+P G L+T KL AQ+A + V V
Sbjct: 147 TVFQDMPHLNAGIVPGDGVHILWPLALGLYRGRYFLFTQEKLTAQQAYELNVVHEVLPQS 206
Query: 180 EIERDLWPRIHAWAK 194
+ L R A+
Sbjct: 207 K----LMERAWEIAR 217
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.10A {Mycobacterium abscessus}
Length = 265
Score = 54.8 bits (133), Expect = 2e-09
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
ATF RG+ P G +++ FPR G A + T +A EA + G V + E
Sbjct: 133 ATFAQLEVNRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGIVQEIVPVGE 192
>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural
genomics, riken S genomics/proteomics initiative, RSGI;
1.80A {Thermus thermophilus} SCOP: c.14.1.3
Length = 264
Score = 54.1 bits (131), Expect = 4e-09
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
G+ + +L+P + G + A L L +EA + G V+ E+
Sbjct: 135 TRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVALAVEDEK 194
Query: 181 IERDLWPRIHAWAK 194
++ + A+
Sbjct: 195 ----VYEKALEVAE 204
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase
superfamily, dimer of trimers, PSI-2, NYSGXRC,
structural genomics; 2.32A {Ruegeria pomeroyi}
Length = 263
Score = 54.2 bits (131), Expect = 4e-09
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 5/74 (6%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F P G +V R+ G +E+ TG +A AL G ++ +
Sbjct: 135 ARFCLPGVQNGGFC-TTPAVAVSRVIGRRAVTEMALTGATYDADWALAAGLINRILPEAA 193
Query: 181 IERDLWPRIHAWAK 194
L + A
Sbjct: 194 ----LATHVADLAG 203
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics,
seattle structur genomics center for infectious disease,
ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB:
3p85_A* 3qyr_A
Length = 256
Score = 54.1 bits (131), Expect = 4e-09
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F G+ P SV P+ G +A + TG L+AQ+AL+ G V+ V ++
Sbjct: 123 AKFADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTEVVAHDD 182
>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2,
protein structure initiative, EN hydratase; 1.76A
{Bordetella parapertussis}
Length = 254
Score = 53.7 bits (130), Expect = 5e-09
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F P G+ + F I G A +L + R +A EA + GFV +
Sbjct: 129 AGFRMPGLKFGLVL---GTRRFRDIVGADQALSILGSARAFDADEARRIGFVRDCAAQAQ 185
Query: 181 IERDLWPRIHAWAK 194
I A A+
Sbjct: 186 ----WPALIDAAAE 195
>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A
{Streptomyces toyocaensis} PDB: 2pg8_A*
Length = 440
Score = 54.1 bits (130), Expect = 6e-09
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F P G+ P G +++ R G V+ +++ GR++ A+E V V +E
Sbjct: 315 AYFSLPAAKEGIIP-GAANLRLGRFAGPRVSRQVILEGRRIWAKEPEARLLVDEVVEPDE 373
Query: 181 IERDLWPRIHAWAK 194
L I
Sbjct: 374 ----LDAAIERSLT 383
>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A
1rjm_A* 1rjn_A* 1q52_A 1q51_A
Length = 334
Score = 53.7 bits (129), Expect = 7e-09
Identities = 18/62 (29%), Positives = 24/62 (38%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F G G S R G A E+ + GR A++ Q G V+ V E
Sbjct: 199 ARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAE 258
Query: 181 IE 182
+E
Sbjct: 259 LE 260
>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding
protein,enoyl-COA hydratase, riken structural
genomics/proteomics initiative, RSGI; 2.20A {Homo
sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A
Length = 272
Score = 53.3 bits (129), Expect = 8e-09
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 194
PR G S+A EL+++ R L+ +EA G +S V + + + A+
Sbjct: 158 PRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAR 209
>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism,
lyase, structural genomics; HET: PGE; 2.30A
{Mycobacterium tuberculosis}
Length = 264
Score = 52.6 bits (127), Expect = 1e-08
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F P + G+ + S + G+ A +L + KL A+ AL G + + T +
Sbjct: 138 AFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEKLTAEIALHTGMANRIGTLAD 197
>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
PSI-2, protein structure initiative; 2.50A {Pseudomonas
syringae PV}
Length = 232
Score = 51.8 bits (125), Expect = 2e-08
Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 4/74 (5%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
+ GMT L S + + + + A+ GF+ V + EE
Sbjct: 126 FSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVINAEMFDPEGAMAAGFLDKVVSVEE 185
Query: 181 IERDLWPRIHAWAK 194
L A A
Sbjct: 186 ----LQGAALAVAA 195
>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP:
c.14.1.3 PDB: 2vre_A
Length = 275
Score = 51.8 bits (125), Expect = 3e-08
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 143 PRIFGN-SVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
P++ GN S+ +EL +T RK+ A EAL G VS VF ++
Sbjct: 160 PKVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKD 198
>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle
ST genomics center for infectious disease, lyase; 1.80A
{Mycobacterium thermoresistibile} PDB: 3ome_A
Length = 279
Score = 51.9 bits (125), Expect = 3e-08
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F P L + G A E+L+TGR + A+E Q G V+ V +
Sbjct: 148 ALFSDPVVLMDIGGVE--YHGHTWELGPRKAKEILFTGRAMTAEEVAQTGMVNRVVPRDR 205
Query: 181 IERDLWPRIHAWAK 194
++ A A
Sbjct: 206 LD----AETRALAG 215
>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.85A {Thermus thermophilus} SCOP:
c.14.1.3
Length = 253
Score = 51.4 bits (124), Expect = 4e-08
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A G SV+ R G A +LL TGR + A+EA G V+ + +
Sbjct: 125 ARLGYTEVKIGFVAAL-VSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRIAPPGK 183
>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein;
2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB:
2a81_A*
Length = 250
Score = 51.0 bits (123), Expect = 4e-08
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F P G+ +++L G S E++Y + L+A + Y V+ V +
Sbjct: 125 ANFVMPELKHGIGCSVGAAIL-GFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSA 183
Query: 181 IERDLWPRIHAWAK 194
L A
Sbjct: 184 ----LLDAAITQAH 193
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics
center for infectious DI niaid; 1.75A {Mycobacterium
marinum}
Length = 278
Score = 50.6 bits (122), Expect = 7e-08
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F + P G S+V R +VA +LL TGR + A EA + G V V +
Sbjct: 146 AKFGISEAKWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMGLVGHVVPDGQ 205
>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A
Length = 258
Score = 49.8 bits (120), Expect = 1e-07
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
++ G A E L+TG +++A+EA Q G V+ V + E
Sbjct: 148 TKLIGPKRALEWLWTGARMSAKEAEQLGIVNRVVSPEL 185
>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC;
2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A*
1dub_A* 1ey3_A* 2hw5_A*
Length = 260
Score = 49.8 bits (120), Expect = 1e-07
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
R G S+A E++ TG +++AQ+A Q G VS +F E
Sbjct: 150 TRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVET 187
>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase,
PSI-2, protein structure initiative; 1.50A {Streptomyces
avermitilis}
Length = 289
Score = 49.9 bits (120), Expect = 1e-07
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 194
R+ G A E + T +A A +YG+V+ E L + A
Sbjct: 157 TRLLGRGRALEAVLTSSDFDADLAERYGWVNRAVPDAE----LDEFVAGIAA 204
>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.45A {Mycobacterium avium subsp}
Length = 276
Score = 49.9 bits (120), Expect = 1e-07
Identities = 13/56 (23%), Positives = 23/56 (41%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVF 176
A P G+ + +P +A E TG +++AQ A++ G + V
Sbjct: 153 AYLADPHVQVGLVAADGGPLTWPLHISLLLAKEYALTGTRISAQRAVELGLANHVA 208
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural
genomics, PSI-2, protein structure initiative; HET: MSE;
2.40A {Pseudomonas aeruginosa}
Length = 258
Score = 49.5 bits (119), Expect = 1e-07
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
F LRG+ P G S+V FPR G + A + TG + +A EAL+ ++ V E
Sbjct: 136 TRFAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILTGDEFDADEALRMRLLTEVVEPGE 195
>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS,
fatty acid metaboli metabolism, lyase, structural
genomics; 1.80A {Mycobacterium tuberculosis} PDB:
3q0j_A* 3pzk_A 3q0g_A*
Length = 278
Score = 49.5 bits (119), Expect = 2e-07
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 194
R G + A +L+ TGR ++A EA + G VS V ++ L A A
Sbjct: 168 TRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADD----LLTEARATAT 215
>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics
center for infectious DI enoyl COA, actinobacteria,
lyase; 1.50A {Mycobacterium smegmatis}
Length = 263
Score = 49.4 bits (119), Expect = 2e-07
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 194
R G + A +L TGR L A+EA + G VS + + L A A+
Sbjct: 153 TRAVGKAKAMDLCLTGRSLTAEEAERVGLVSRIVPAAD----LLDEALAVAQ 200
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural
genomic for structural genomics of infectious diseases,
csgid; HET: MSE; 1.80A {Bacillus anthracis}
Length = 265
Score = 49.4 bits (119), Expect = 2e-07
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 194
PR+ G A EL+YTGR+++AQEA +YG V V L + A+
Sbjct: 155 PRLIGVGRAKELIYTGRRISAQEAKEYGLVEFVVPVHL----LEEKAIEIAE 202
>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.80A
{Streptomyces avermitilis}
Length = 287
Score = 49.5 bits (119), Expect = 2e-07
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 194
G + A E++ T +A+ A YG+++ +E L + A+
Sbjct: 160 RGRVGRNRALEVVLTADLFDAETAASYGWINRALPADE----LDEYVDRVAR 207
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: FLC PG4; 1.82A {Bacillus anthracis}
Length = 261
Score = 49.4 bits (119), Expect = 2e-07
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
PR G + A E++ T + EAL++G V+GVF E
Sbjct: 151 PRYVGKAKACEMMLTSTPITGAEALKWGLVNGVFAEET 188
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Length = 277
Score = 49.1 bits (118), Expect = 2e-07
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 194
R+ G+S A EL+++GR +A+EAL G + + ++ ++ AWA+
Sbjct: 168 TRVVGSSRAKELVFSGRFFDAEEALALGLIDDMVAPDD----VYDSAVAWAR 215
>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase,
crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens}
PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E*
2vsu_F* 2vsu_E* 2vsu_C*
Length = 276
Score = 49.1 bits (118), Expect = 2e-07
Identities = 9/52 (17%), Positives = 18/52 (34%), Gaps = 4/52 (7%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 194
G+ + + TG+ Q+A + G V+ + L A+
Sbjct: 159 ADTVGHRQSLMYIMTGKTFGGQKAAEMGLVNESVPLAQ----LREVTIELAR 206
>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, otholog; 2.15A {Mycobacterium avium subsp}
Length = 274
Score = 49.1 bits (118), Expect = 2e-07
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRK--LNAQEALQYGFVSGVFTT 178
ATF P G+ V R+ S+A + G+ ++AQ A + G +S +
Sbjct: 141 ATFFDPHVSIGLVAGR-ELVRVSRVLPRSIALRMALMGKHERMSAQRAYELGLISEIVEH 199
Query: 179 EEIERDLWPRIHAWAK 194
+ L R H A
Sbjct: 200 DR----LLERAHEIAD 211
>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics,
protein structure INI NEW YORK structural genomix
research consortium; 2.00A {Rhodopseudomonas palustris}
Length = 275
Score = 49.1 bits (118), Expect = 2e-07
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
PR+ G + ++++ TGR +A E + +GF +
Sbjct: 159 PRLIGVARMADMMLTGRVYSAAEGVVHGFSQYLIENGS 196
>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase,
structural genomics, NPPSFA; 2.16A {Geobacillus
kaustophilus}
Length = 265
Score = 49.0 bits (118), Expect = 2e-07
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 194
R+ G S A ++ TG + QEAL+ G V+ VF E R +A+
Sbjct: 155 ARLIGYSRALDMNITGETITPQEALEIGLVNRVFPQAE----TRERTREYAR 202
>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli}
SCOP: c.14.1.3 PDB: 1ef9_A*
Length = 261
Score = 49.1 bits (118), Expect = 3e-07
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
R G + EL++T + AQ AL G ++ V EE
Sbjct: 149 TRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEE 186
>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A
{Mycobacterium abscessus} PDB: 3qka_A
Length = 262
Score = 48.7 bits (117), Expect = 3e-07
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A G+ ++ PR+ G+S A +L+ TGR ++A EAL G V+ V +
Sbjct: 132 AVLGVFCRRWGVPLIDGGTIRLPRLIGHSRAMDLILTGRPVHANEALDIGLVNRVVARGQ 191
>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 2.09A {Mycobacterium abscessus}
Length = 256
Score = 48.3 bits (116), Expect = 4e-07
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F P RG+ + P VA EL TG A++A +YGF++ + +
Sbjct: 124 AKFGIPEVKRGLVAGAGGLLRLPNRIPYQVAMELALTGESFTAEDAAKYGFINRLVDDGQ 183
>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious
DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium
avium subsp} PDB: 3r9s_A 3r0o_A
Length = 267
Score = 48.3 bits (116), Expect = 4e-07
Identities = 16/60 (26%), Positives = 21/60 (35%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F P RG+ VA LL TG L+A A +G ++ V
Sbjct: 132 AQFGLPEVKRGLIAAAGGVFRIAEQLPRKVAMRLLLTGEPLSAAAARDWGLINEVVEAGS 191
>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 2.20A {Mycobacterium marinum}
Length = 265
Score = 47.9 bits (115), Expect = 5e-07
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
+ F P RG+ G + P ++A EL TG L+A+ A G V+ +
Sbjct: 133 SAFGIPEVKRGLVAGGGGLLRLPERIPYAIAMELALTGDNLSAERAHALGMVNVLAEPGA 192
>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Mycobacterium abscessus}
Length = 265
Score = 47.9 bits (115), Expect = 6e-07
Identities = 21/60 (35%), Positives = 26/60 (43%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
ATF P RG+ P S V R + A E++ TG L A EA +G V V
Sbjct: 133 ATFGLPEVQRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGT 192
>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET:
CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A
Length = 260
Score = 47.9 bits (115), Expect = 6e-07
Identities = 12/38 (31%), Positives = 14/38 (36%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
G+ A L G EALQ G V V E+
Sbjct: 152 ENTIGHRAAERALQLGLLFPPAEALQVGIVDQVVPEEQ 189
>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for
infectious disease, S non-pathogenic mycobacterium
species, ortholog; 1.50A {Mycobacterium avium}
Length = 267
Score = 46.8 bits (112), Expect = 1e-06
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
++F G+ P S L P++ A+ TG K +A+ A + G ++
Sbjct: 139 SSFALTEARIGVAPAIISLTLLPKL-SARAAARYYLTGEKFDARRAEEIGLIT------M 191
Query: 181 IERDLWPRIHAWAK 194
DL I
Sbjct: 192 AAEDLDAAIDQLVT 205
>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas
campestris PV} PDB: 3m6m_A
Length = 305
Score = 46.7 bits (111), Expect = 2e-06
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSS 197
+ +A +++ G +A++ L G V V + + + S
Sbjct: 193 CQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQ----GVAAVEQVIRESK 243
>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural
genomics center for infectious lyase; 1.55A
{Mycobacterium smegmatis}
Length = 286
Score = 46.5 bits (111), Expect = 2e-06
Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F G+ V R G A E+L TG ++A +A G V+ V +
Sbjct: 150 ARFAVSGINVGLFC-STPGVALSRNVGRKAAFEMLVTGEFVSADDAKGLGLVNRVVAPKA 208
Query: 181 IERDLWPRIHAWAK 194
L I A
Sbjct: 209 ----LDDEIEAMVS 218
>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH;
polyketide synthase, enoyl COA hydratase,isomerase;
2.32A {Bacillus subtilis}
Length = 267
Score = 46.1 bits (110), Expect = 3e-06
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A+F L G+ P C R G A + + ++ QEA ++G + +
Sbjct: 131 ASFSLSELLFGLYP-ACVLPFLIRRIGRQKAHYMTLMTKPISVQEASEWGLIDAFDAESD 189
>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase;
2.04A {Synechocystis SP}
Length = 275
Score = 45.3 bits (108), Expect = 4e-06
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 131 GMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 182
G G S RI G A E+ Y R+ +AQEA + G V+ V + +E
Sbjct: 150 GSFDGGFGSSYLARIVGQKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRLE 201
>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA;
2.9A {Staphylococcus aureus}
Length = 273
Score = 45.3 bits (108), Expect = 4e-06
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 182
RI G+ A E+ Y R+ NAQEAL G V+ V E++E
Sbjct: 160 ARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEKVE 199
>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily,
lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A
2iex_A
Length = 289
Score = 45.3 bits (108), Expect = 5e-06
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 182
RI G A E+ + R+ +A++AL G V+ V ++E
Sbjct: 176 ARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLE 215
>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty
acid metabolism, transit peptide, lipid Met crontonase,
mitochondrion, CAsp; 2.3A {Homo sapiens}
Length = 287
Score = 44.9 bits (107), Expect = 6e-06
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
++F TP G+ V R VA E+L+TG ++AQEAL +G +S V E
Sbjct: 157 SSFATPGVNVGLFC-STPGVALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAE 215
Query: 181 IE 182
++
Sbjct: 216 LQ 217
>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving,
burkholderia xenovorans LB400 crotonase; 1.50A
{Burkholderia xenovorans}
Length = 556
Score = 44.6 bits (105), Expect = 1e-05
Identities = 10/59 (16%), Positives = 16/59 (27%), Gaps = 4/59 (6%)
Query: 136 GCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAK 194
G + V R + A + + A + V V + I A A
Sbjct: 180 GLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQ----FDQAIQARAL 234
>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics;
1.58A {Legionella pneumophila subsp}
Length = 268
Score = 43.7 bits (104), Expect = 1e-05
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
A F G+ P S + R G A L + +A A V +
Sbjct: 130 ARFCFSEVKLGLIPAVISPYV-VRAIGERAAKMLFMSAEVFDATRAYSLNLVQHCVPDDT 188
Query: 181 IE 182
+
Sbjct: 189 LL 190
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 4e-05
Identities = 40/260 (15%), Positives = 74/260 (28%), Gaps = 66/260 (25%)
Query: 1 M--SGKSVYIKQVA----LLQIMA------QVG-CYVPASLAEFRLADHIYTRIGFNDSI 47
+ SGK+ V + M + C P ++ E L + +I N +
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE-MLQK-LLYQIDPNWTS 215
Query: 48 ECNAS-TFALEMKEIAHIIQFLT-----PRSLILVDELCRAGIEPPPSCLPGERLDHYAR 101
+ S L + I ++ L L+++ + A + +
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW--------NAFNLSCK 267
Query: 102 ---TT--EQVKNRVLLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLY 156
TT +QV + + + T E S L + +L
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLT----PDEVKS--LLLKYLDCRP-QDL-- 318
Query: 157 TGRKLNAQEALQYG--FVS--GVFTTEEIER-DLWPRIHAWAKLSSCIVSLLAHL----M 207
+E L +S + + D W ++ KL++ I S L L
Sbjct: 319 ------PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD-KLTTIIESSLNVLEPAEY 371
Query: 208 R------GILRDG-HATTQT 220
R + H T
Sbjct: 372 RKMFDRLSVFPPSAHIPTIL 391
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 4e-05
Identities = 39/246 (15%), Positives = 74/246 (30%), Gaps = 81/246 (32%)
Query: 2 SGKSVYIKQVALLQIMAQVGC-----YVPASLAEFRLADHIYTRIGF------------- 43
S +S ++ + ++ +G Y SL L D + G
Sbjct: 288 SWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 44 --NDSIE-CNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYA 100
D + N+ L + I ++L++ +G PP L G L+
Sbjct: 348 QVQDYVNKTNSH---LPAGKQVEISLVNGAKNLVV------SG---PPQSLYG--LNLTL 393
Query: 101 R------TTEQVKNRVLLN--HPVFVLQ-----ATFHTPFTLRGMTPEGCSSVLFPRIFG 147
R +Q +R+ + F + + FH+ + P I
Sbjct: 394 RKAKAPSGLDQ--SRIPFSERKLKFSNRFLPVASPFHSHL----LVP------ASDLINK 441
Query: 148 NSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLM 207
+ V + + + + + V+ T + DL R LS I +
Sbjct: 442 DLVKNNVSFNAKDIQIP----------VYDTFD-GSDL--R-----VLSGSISERIVDC- 482
Query: 208 RGILRD 213
I+R
Sbjct: 483 --IIRL 486
Score = 40.4 bits (94), Expect = 3e-04
Identities = 39/206 (18%), Positives = 67/206 (32%), Gaps = 41/206 (19%)
Query: 22 CYVPASLAEFRLADHIYTRIGFNDSIECNASTFAL------------EMKEI----AHII 65
Y+ A + R D F E NA A+ E++++ ++
Sbjct: 125 NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV 184
Query: 66 QFLTPRSLILVDELCRAGIEPPPSCLPGERLDHYARTTEQVKNR-VLLNHPV-----FVL 119
L S + EL R ++ G + + ++ LL+ P+ V+
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI 244
Query: 120 QATFHTPFTLR--GMTPEGCSSVLFPRIFGNSVASELLYTGRKL-----------NAQEA 166
Q H T + G TP L + G + S+ L T + + ++A
Sbjct: 245 QLA-HYVVTAKLLGFTPG----ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKA 299
Query: 167 LQYGFVSGVFTTEEI-ERDLWPRIHA 191
+ F GV E L P I
Sbjct: 300 ITVLFFIGVRCYEAYPNTSLPPSILE 325
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway,
oxidoreductase, lipid metabolism, LY isomerase,
peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A
{Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A*
2x58_A*
Length = 742
Score = 34.9 bits (81), Expect = 0.017
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 182
PR+ G VA +L+ +G+ L+A EAL+ G + V ++ +E
Sbjct: 159 PRVVGVPVALDLITSGKYLSADEALRLGILDAVVKSDPVE 198
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric
complex, lyase, oxidoreductase/transferase complex,
lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP:
a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A*
1wdm_A* 2d3t_A*
Length = 715
Score = 34.9 bits (81), Expect = 0.019
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 182
PR+ G A E + +G++ A++AL+ V V T +++
Sbjct: 156 PRLIGVDNAVEWIASGKENRAEDALKVSAVDAVVTADKLG 195
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase,
peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A
{Arabidopsis thaliana}
Length = 725
Score = 34.2 bits (79), Expect = 0.026
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 143 PRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEEIE 182
PR+ G + A E++ T + + A+E G + V E+
Sbjct: 155 PRLVGLTKALEMILTSKPVKAEEGHSLGLIDAVVPPAELV 194
>1pov_0 Poliovirus native empty capsid (type 1); picornavirus, icosahedral
virus; HET: MYR SPH; 2.80A {Human poliovirus 1} SCOP:
b.121.4.1
Length = 340
Score = 28.0 bits (62), Expect = 2.3
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 36 HIYTRIGFNDSIECNASTF 54
H R G+ ++CNAS F
Sbjct: 167 HYLGRSGYTVHVQCNASKF 185
>1qox_A Beta-glucosidase; hydrolase, cellulose degradation; 2.7A {Bacillus
circulans} SCOP: c.1.8.4
Length = 449
Score = 27.4 bits (62), Expect = 4.0
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 75 LVDELCRAGIEP 86
LVDEL GIEP
Sbjct: 103 LVDELLANGIEP 114
>1e4i_A Beta-glucosidase; hydrolase, family 1 glycosyl hydrolase, covalent
enzyme-GLYC intermediate, alpha/beta barrel; HET: G2F
NFG; 2.00A {Bacillus polymyxa} SCOP: c.1.8.4 PDB: 1tr1_A
1bgg_A* 1bga_A 1uyq_A*
Length = 447
Score = 27.5 bits (62), Expect = 4.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 75 LVDELCRAGIEP 86
+VD L GIEP
Sbjct: 103 VVDLLNDNGIEP 114
>1hxs_2 Genome polyprotein, coat protein VP2; picornavirus, AB initio phase
DETE icosahedral virus; HET: MYR PLM; 2.20A {Human
poliovirus 1} PDB: 1ar6_2* 1ar8_2* 1asj_2* 1al2_2*
1nn8_2 1po1_2* 1po2_2* 1vbd_2* 2plv_2* 1ar7_2* 1ar9_2*
3epc_2* 1dgi_2* 3iyb_4 3iyc_4 1eah_2* 1xyr_2 3epf_2*
1pvc_2* 1piv_2* ...
Length = 272
Score = 27.2 bits (60), Expect = 4.1
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 36 HIYTRIGFNDSIECNASTF 54
H R G+ ++CNAS F
Sbjct: 99 HYLGRSGYTVHVQCNASKF 117
>1gnx_A Beta-glucosidase; hydrolase, glycosyltransferase, family 1 of
glycosyl hydrolase; HET: SUC; 1.68A {Streptomyces SP}
SCOP: c.1.8.4 PDB: 1gon_A
Length = 479
Score = 27.5 bits (62), Expect = 4.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 75 LVDELCRAGIEP 86
L DEL GI+P
Sbjct: 116 LADELLAKGIQP 127
>3ta9_A Glycoside hydrolase family 1; TIM barrel, glucosidase; 3.00A
{Halothermothrix orenii}
Length = 458
Score = 27.5 bits (62), Expect = 4.3
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 75 LVDELCRAGIEP 86
LVD L +A I P
Sbjct: 111 LVDNLLKANIRP 122
>2o9p_A Beta-glucosidase B; family 1 glycoside hydrolase; 2.10A
{Paenibacillus polymyxa} PDB: 2o9t_A* 2z1s_A* 2jie_A*
2o9r_A*
Length = 454
Score = 27.5 bits (62), Expect = 4.3
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 75 LVDELCRAGIEP 86
L+DE+ AG+ P
Sbjct: 111 LLDEIELAGLIP 122
>3ahx_A Beta-glucosidase A; cellulases, glycosyl hydrolase, manganese
enhancement, hydro; HET: 7PE; 1.90A {Clostridium
cellulovorans}
Length = 453
Score = 27.5 bits (62), Expect = 4.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 75 LVDELCRAGIEP 86
L+DEL + IEP
Sbjct: 104 LIDELIKNDIEP 115
>3fj0_A Beta-glucosidase; BGLB,BGL, hydrolase, glycosidase; HET: BGC; 1.15A
{Uncultured bacterium} PDB: 3cmj_A 3fiz_A* 3fiy_A*
Length = 465
Score = 27.5 bits (62), Expect = 4.5
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 75 LVDELCRAGIEP 86
LV+ L + I P
Sbjct: 124 LVEGLHKRDILP 135
>2j78_A Beta-glucosidase A; family 1, hydrolase, inhibitor, glycosidase,
polysaccharide degradation, transition state mimic,
carbohydrate metabolism; HET: GOX; 1.65A {Thermotoga
maritima} SCOP: c.1.8.4 PDB: 1oif_A* 1oim_A* 1oin_A*
1od0_A* 1w3j_A* 1uz1_A* 2cbv_A* 2ces_A* 2cet_A* 2j75_A*
2j77_A* 2cbu_A* 2j79_A* 2j7b_A* 2j7c_A* 2j7d_A* 2j7e_A*
2j7f_A* 2j7g_A* 2j7h_A* ...
Length = 468
Score = 27.1 bits (61), Expect = 4.7
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 75 LVDELCRAGIEP 86
++D L GI P
Sbjct: 126 IIDTLLEKGITP 137
>3f5l_A Beta-glucosidase; beta-alpha-barrels, glycosidase, hydrolase; HET:
LB2 MES; 1.37A {Oryza sativa japonica group} PDB:
3aht_A* 3ahv_A* 3f5i_A* 3f5j_A* 3f5k_A* 3f4v_A* 2rgm_A*
2rgl_A* 3scu_A* 3scn_A* 3sco_A* 3sct_A* 3scv_A* 3scw_A*
Length = 481
Score = 27.1 bits (61), Expect = 4.9
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 75 LVDELCRAGIEP 86
L++ L + GI P
Sbjct: 118 LINYLLQKGITP 129
>1ug6_A Beta-glycosidase; glucosidase, atomic resolution, riken structural
genomics/PR initiative, RSGI, structural genomics,
hydrolase; 0.99A {Thermus thermophilus} SCOP: c.1.8.4
PDB: 1np2_A
Length = 431
Score = 27.1 bits (61), Expect = 5.0
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 75 LVDELCRAGIEP 86
LVD L +GI P
Sbjct: 102 LVDRLLASGITP 113
>2jf7_A Strictosidine-O-beta-D-glucosidase; alkaloid, hydrolase; 2.48A
{Rauvolfia serpentina} PDB: 2jf6_A
Length = 532
Score = 27.2 bits (61), Expect = 5.1
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 75 LVDELCRAGIEP 86
+DEL GI+P
Sbjct: 144 FIDELLANGIKP 155
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA
binding protein, structural genomics, NPPSFA; 1.80A
{Pyrococcus horikoshii} PDB: 1s04_A
Length = 109
Score = 25.9 bits (57), Expect = 5.2
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 11/64 (17%)
Query: 30 EFRLADHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLILVDELCRAGIEPPPS 89
E RL D +I D I +++K I + + + ++ E +
Sbjct: 23 EGRLYDEKRRQIKPGDIIIFEGGKLKVKVKGIRV---YSSFKEML--------EKEGIEN 71
Query: 90 CLPG 93
LPG
Sbjct: 72 VLPG 75
>3gnp_A OS03G0212800 protein; beta-alpha barrel, glycosidase, hydrolase;
HET: SOG; 1.80A {Oryza sativa subsp} PDB: 3gno_A*
3gnr_A*
Length = 488
Score = 27.1 bits (61), Expect = 5.3
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 75 LVDELCRAGIEP 86
L+D L GI+P
Sbjct: 115 LIDALLAKGIQP 126
>2e3z_A Beta-glucosidase; TIM barrel, glycoside hydrolase family 1, CLAN
GH-A, structural genomics, NPPSFA; 1.50A {Phanerochaete
chrysosporium} PDB: 2e40_A*
Length = 465
Score = 27.1 bits (61), Expect = 6.0
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 75 LVDELCRAGIEP 86
L++EL + GI P
Sbjct: 109 LIEELVKEGITP 120
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex,
alpha / beta motif, protease, membr protein stomatin,
hydrolase-protein binding complex; 2.25A {Pyrococcus
horikoshii} PDB: 3bpp_A 2deo_A
Length = 230
Score = 26.5 bits (58), Expect = 6.1
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 158 GRKLNAQEALQYGFVSGVFTTEE 180
L +EAL+YG + V
Sbjct: 154 DLSLTPEEALKYGVIEVVARDIN 176
>1cbg_A Cyanogenic beta-glucosidase; hydrolase (O-glycosyl); 2.15A
{Trifolium repens} SCOP: c.1.8.4
Length = 490
Score = 26.7 bits (60), Expect = 6.2
Identities = 4/12 (33%), Positives = 9/12 (75%)
Query: 75 LVDELCRAGIEP 86
L++E+ G++P
Sbjct: 120 LINEVLANGMQP 131
>1wcg_A Thioglucosidase, myrosinase; aphid, beta-glucosidase, insect,
beta-barrel, hydrolase, glycosidase; 1.10A {Brevicoryne
brassicae} SCOP: c.1.8.4
Length = 464
Score = 26.7 bits (60), Expect = 6.9
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 75 LVDELCRAGIEP 86
L++EL + I P
Sbjct: 105 LINELIKNDIIP 116
>1v02_A Dhurrinase, dhurrinase-1; beta-glucosidase, dhurrin hydrolysis,
PEST defense, family GH1, hydrolase; 1.9A {Sorghum
bicolor} SCOP: c.1.8.4 PDB: 1v02_E 1v03_A*
Length = 565
Score = 26.8 bits (60), Expect = 7.1
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 75 LVDELCRAGIEP 86
L+D L GIEP
Sbjct: 177 LIDLLLENGIEP 188
>1v08_A Beta-glucosidase; glycoside hydrolase, dimboa-glucoside, inhibitor,
PEST defense, family GH1, hydrolase, chloroplast,
transit peptide, 3D-structure; HET: NTZ; 1.9A {Zea mays}
SCOP: c.1.8.4 PDB: 1e4l_A* 1e4n_A* 1e56_A* 1e55_A*
1e1e_A 1e1f_A* 1h49_A* 1hxj_A
Length = 512
Score = 26.8 bits (60), Expect = 7.1
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 75 LVDELCRAGIEP 86
L++ L GIEP
Sbjct: 125 LINLLLENGIEP 136
>1vff_A Beta-glucosidase; glycosyl hydrolase, membrane-bound enzyme,
thermostability, TIM barrel, alkylglucosides; 2.50A
{Pyrococcus horikoshii} SCOP: c.1.8.4
Length = 423
Score = 26.7 bits (60), Expect = 7.4
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 75 LVDELCRAGIEP 86
++D L GI P
Sbjct: 94 IIDLLLTRGITP 105
>3ptm_A Beta-glucosidase OS4BGlu12; beta-alpha barrel, glycosidase,
hydrolase; HET: G2F; 2.40A {Oryza sativa} PDB: 3ptk_A*
3ptq_A*
Length = 505
Score = 26.8 bits (60), Expect = 7.6
Identities = 5/12 (41%), Positives = 9/12 (75%)
Query: 75 LVDELCRAGIEP 86
L++EL G++P
Sbjct: 135 LINELLSKGVQP 146
>2dga_A Beta-glucosidase; alpha/beta barrel, hydrolase; 1.80A {Triticum
aestivum} PDB: 3aiq_A* 3air_A* 3ais_A* 3aiu_A 3aiv_A*
3aiw_A*
Length = 565
Score = 26.5 bits (59), Expect = 7.7
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 75 LVDELCRAGIEP 86
L++ L I P
Sbjct: 173 LINSLIDNDIVP 184
>4a3y_A Raucaffricine-O-beta-D-glucosidase; hydrolase, alkaloid; 2.15A
{Rauvolfia serpentina} PDB: 3u5u_A 3u57_A 3u5y_A*
Length = 540
Score = 26.5 bits (59), Expect = 7.8
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 75 LVDELCRAGIEP 86
L+D L GI+P
Sbjct: 123 LIDGLLANGIKP 134
>3vii_A Beta-glucosidase; cellulases, glycosyl hydrolase, hydrolase; HET:
BTB; 0.97A {Neotermes koshunensis} PDB: 3ahz_A* 3vif_A*
3vih_A 3vig_A* 3vim_A* 3ai0_A* 3vin_A* 3vio_A* 3vip_A*
3vij_A* 3vik_A* 3vil_A*
Length = 487
Score = 26.4 bits (59), Expect = 8.2
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 75 LVDELCRAGIEP 86
L++EL GIEP
Sbjct: 112 LINELLANGIEP 123
>1e4m_M Myrosinase MA1; hydrolase, family 1 glycosyl hydrolase,
glucosinolate, TIM B; HET: NAG FUC BMA MAN; 1.2A
{Sinapis alba} SCOP: c.1.8.4 PDB: 1e6q_M* 1e6s_M*
1e6x_M* 1e70_M* 1e71_M* 1e72_M* 1e73_M* 1w9b_M* 1w9d_M*
2wxd_M* 1dwa_M* 1dwf_M* 1dwg_M* 1dwh_M* 1dwi_M* 1dwj_M*
1myr_A*
Length = 501
Score = 26.4 bits (59), Expect = 8.8
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 75 LVDELCRAGIEP 86
L+ L + GI P
Sbjct: 124 LISGLIKKGITP 135
>3apg_A Beta-glucosidase; TIM barrel, hydrolase, sugar binding, hydrolysis;
2.35A {Pyrococcus furiosus}
Length = 473
Score = 26.1 bits (58), Expect = 9.6
Identities = 1/12 (8%), Positives = 3/12 (25%)
Query: 75 LVDELCRAGIEP 86
+ + G
Sbjct: 134 IYSDWKERGKTF 145
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics,
protein structure initiative, center for eukaryot
structural genomics, CESG; 2.10A {Arabidopsis thaliana}
SCOP: c.55.3.5 PDB: 2q3s_A
Length = 206
Score = 26.1 bits (57), Expect = 9.7
Identities = 6/45 (13%), Positives = 13/45 (28%), Gaps = 11/45 (24%)
Query: 10 QVALLQIMAQVGC----------YVPASLAEFRLADHIYTRIGFN 44
++ +++ + C L F A T +G
Sbjct: 72 SLSSVKLSTRNLCLFLRLPKPFHDNLKDLYRF-FASKFVTFVGVQ 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.137 0.415
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,423,416
Number of extensions: 198598
Number of successful extensions: 551
Number of sequences better than 10.0: 1
Number of HSP's gapped: 543
Number of HSP's successfully gapped: 114
Length of query: 223
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 133
Effective length of database: 4,188,903
Effective search space: 557124099
Effective search space used: 557124099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (24.8 bits)