RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7339
         (223 letters)



>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the
           C-terminal domain {Thermus aquaticus [TaxId: 271]}
          Length = 224

 Score = 64.1 bits (155), Expect = 4e-13
 Identities = 39/83 (46%), Positives = 57/83 (68%)

Query: 1   MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
           M+GKS +++Q AL+ ++AQVG +VPA  A   L D IYTRIG +D +    STF +EM+E
Sbjct: 45  MAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEE 104

Query: 61  IAHIIQFLTPRSLILVDELCRAG 83
           +A I++  T  SL+L+DE+ R  
Sbjct: 105 VALILKEATENSLVLLDEVGRGT 127


>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the
           C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 234

 Score = 62.9 bits (152), Expect = 9e-13
 Identities = 37/83 (44%), Positives = 51/83 (61%)

Query: 1   MSGKSVYIKQVALLQIMAQVGCYVPASLAEFRLADHIYTRIGFNDSIECNASTFALEMKE 60
           M GKS Y++Q AL+ +MA +G YVPA   E    D I+TR+G  D +    STF +EM E
Sbjct: 51  MGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTE 110

Query: 61  IAHIIQFLTPRSLILVDELCRAG 83
            A+I+   T  SL+L+DE+ R  
Sbjct: 111 TANILHNATEYSLVLMDEIGRGT 133


>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 260

 Score = 56.3 bits (135), Expect = 2e-10
 Identities = 26/97 (26%), Positives = 40/97 (41%)

Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
           A F  P  L G  P    +    R  G S+A E++ TG +++AQ+A Q G VS +F  E 
Sbjct: 128 AQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVET 187

Query: 181 IERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGHAT 217
           +  +        A  S  IV++    +          
Sbjct: 188 LVEEAIQCAEKIANNSKIIVAMAKESVNAAFEMTLTE 224


>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 266

 Score = 34.7 bits (78), Expect = 0.006
 Identities = 20/98 (20%), Positives = 37/98 (37%)

Query: 121 ATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQYGFVSGVFTTEE 180
           A      T   + P G  +   PR  G S+A EL+++ R L+ +EA   G +S V    +
Sbjct: 130 AKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQ 189

Query: 181 IERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGHATT 218
                + +    A+       +   + +  +  G    
Sbjct: 190 EGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVD 227


>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus
           thermophilus [TaxId: 274]}
          Length = 253

 Score = 32.0 bits (71), Expect = 0.047
 Identities = 22/108 (20%), Positives = 38/108 (35%)

Query: 110 VLLNHPVFVLQATFHTPFTLRGMTPEGCSSVLFPRIFGNSVASELLYTGRKLNAQEALQY 169
            L    V + +        ++        SV+  R  G   A +LL TGR + A+EA   
Sbjct: 113 ALACDLVVMDEEARLGYTEVKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKAL 172

Query: 170 GFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILRDGHAT 217
           G V+ +    +   +        AK +   + L   L+  +   G   
Sbjct: 173 GLVNRIAPPGKALEEAKALAEEVAKNAPTSLRLTKELLLALPGMGLED 220


>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase
           (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 266

 Score = 30.0 bits (66), Expect = 0.18
 Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 1/58 (1%)

Query: 155 LYTGRKLNAQEALQYGFVSGVFTTEEIERDLWPRIHAWAKLSSCIVSLLAHLMRGILR 212
           L   +        + GF+S  F       + +       +L   +  L      G+ +
Sbjct: 174 LMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNA-KVLEELREKVKGLYLPSCLGMKK 230


>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium
           falciparum [TaxId: 5833]}
          Length = 190

 Score = 27.8 bits (61), Expect = 0.88
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 161 LNAQEALQYGFVSGVFTT 178
           +NA EA QYG +  V  T
Sbjct: 165 MNALEAKQYGIIDEVIET 182


>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 179

 Score = 26.9 bits (59), Expect = 1.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 161 LNAQEALQYGFVSGVFT 177
             A EAL+YGFV  + T
Sbjct: 161 FTAAEALEYGFVDHIIT 177


>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia
           coli [TaxId: 562]}
          Length = 183

 Score = 26.8 bits (59), Expect = 1.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 161 LNAQEALQYGFVSGVFT 177
           L+A EA++YG V  + T
Sbjct: 164 LSAPEAVEYGLVDSILT 180


>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo
           sapiens), mitochondrial [TaxId: 9606]}
          Length = 193

 Score = 26.5 bits (58), Expect = 2.1
 Identities = 4/17 (23%), Positives = 9/17 (52%)

Query: 161 LNAQEALQYGFVSGVFT 177
           ++  EA ++G +  V  
Sbjct: 174 MSPMEAQEFGILDKVLV 190


>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 192

 Score = 26.2 bits (57), Expect = 2.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query: 161 LNAQEALQYGFVSGVFT 177
           ++AQE L+YGF+  +  
Sbjct: 174 MSAQETLEYGFIDEIMA 190


>d1s04a_ b.122.1.6 (A:) Hypothetical protein PF0455 {Pyrococcus
          furiosus [TaxId: 2261]}
          Length = 110

 Score = 24.6 bits (54), Expect = 4.9
 Identities = 9/34 (26%), Positives = 12/34 (35%)

Query: 30 EFRLADHIYTRIGFNDSIECNASTFALEMKEIAH 63
          E RL D    +I   D I        + +K I  
Sbjct: 23 EGRLYDEKRRQIKPGDVISFEGGKLKVRVKAIRV 56


>d1s58a_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid
          protein {Human parvovirus B19 [TaxId: 10798]}
          Length = 536

 Score = 25.6 bits (56), Expect = 5.9
 Identities = 10/40 (25%), Positives = 16/40 (40%)

Query: 35 DHIYTRIGFNDSIECNASTFALEMKEIAHIIQFLTPRSLI 74
          +H Y       S   NAS    ++  I  I+ + TP   +
Sbjct: 33 EHHYKVFSPAASSCHNASGKEAKVCTITPIMGYSTPWRYL 72


>g1pvc.1 b.121.4.1 (4:,2:) Poliovirus coat proteins {Poliovirus type
           3, strain Sabin [TaxId: 12086]}
          Length = 334

 Score = 24.8 bits (54), Expect = 9.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 36  HIYTRIGFNDSIECNASTF 54
           H   R G+   ++CNAS F
Sbjct: 162 HYLGRSGYTVHVQCNASKF 180


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 820,538
Number of extensions: 36104
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 14
Length of query: 223
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 141
Effective length of database: 1,281,736
Effective search space: 180724776
Effective search space used: 180724776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.6 bits)