BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7340
(440 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CRU|A Chain A, Solution Structure Of Programmed Cell Death 5
Length = 118
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 56/73 (76%)
Query: 26 DMKNSILSQVLDQSARARLNTIMLCKPEKAQQIENMICQMAQTGQIMNKLGENELIGLLE 85
+M+NSIL+QVLDQSARARL+ + L KPEK + +EN + QMA+ GQ+ K+ E LI +L+
Sbjct: 37 EMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILK 96
Query: 86 QISNREEKKSSVK 98
++S + EK ++VK
Sbjct: 97 KVSQQTEKTTTVK 109
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 51/67 (76%)
Query: 232 DMKNSILSQVLDQSARARLNTIMLCKPEKAQQIENMICQMAQTGQIMNKLGENELIGLLE 291
+M+NSIL+QVLDQSARARL+ + L KPEK + +EN + QMA+ GQ+ K+ E LI +L+
Sbjct: 37 EMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILK 96
Query: 292 QISNREE 298
++S + E
Sbjct: 97 KVSQQTE 103
>pdb|2K6B|A Chain A, Solution Structure Of 1-112 Fragment Of Human Programmed
Cell Death 5 Protein
Length = 113
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 56/73 (76%)
Query: 26 DMKNSILSQVLDQSARARLNTIMLCKPEKAQQIENMICQMAQTGQIMNKLGENELIGLLE 85
+M+NSIL+QVLDQSARARL+ + L KPEK + +EN + QMA+ GQ+ K+ E LI +L+
Sbjct: 39 EMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILK 98
Query: 86 QISNREEKKSSVK 98
++S + EK ++VK
Sbjct: 99 KVSQQTEKTTTVK 111
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 51/67 (76%)
Query: 232 DMKNSILSQVLDQSARARLNTIMLCKPEKAQQIENMICQMAQTGQIMNKLGENELIGLLE 291
+M+NSIL+QVLDQSARARL+ + L KPEK + +EN + QMA+ GQ+ K+ E LI +L+
Sbjct: 39 EMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILK 98
Query: 292 QISNREE 298
++S + E
Sbjct: 99 KVSQQTE 105
>pdb|2NSM|A Chain A, Crystal Structure Of The Human Carboxypeptidase N
(kininase I) Catalytic Domain
Length = 439
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 309 FLAEAHRGVQGFVTDDLGNPVEKASLKIKGRDVGFQTTKYGEFWRILLPGIYKLEVYADG 368
FL + H+G++G V D N + A + + G + + +G+++R+LLPGIY + A G
Sbjct: 315 FLEQVHQGIKGMVLDQNYNNLANAVISVSGINHDVTSGDHGDYFRLLLPGIYTVSATAPG 374
Query: 369 YVPREIDFMVVEQHPTLLNVTLHTS 393
Y P + V PTL+N L S
Sbjct: 375 YDPETVTVTVGPAEPTLVNFHLKRS 399
>pdb|3MN8|A Chain A, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|B Chain B, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|C Chain C, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
pdb|3MN8|D Chain D, Structure Of Drosophila Melanogaster Carboxypeptidase D
Isoform 1b Short
Length = 435
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 309 FLAEAHRGVQGFVTDDLGNPVEKASLKIKG-RDVGFQTTKYGEFWRILLPGIYKLEVYAD 367
L +AH G++G VTD G P+ A++ + G + +T+K GE+WR+L PG+Y + A
Sbjct: 331 LLRQAHIGIKGLVTDASGFPIADANVYVAGLEEKPMRTSKRGEYWRLLTPGLYSVHASAF 390
Query: 368 GY 369
GY
Sbjct: 391 GY 392
>pdb|1UWY|A Chain A, Crystal Structure Of Human Carboxypeptidase M
Length = 426
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 309 FLAEAHRGVQGFVTDDLGNPVEKASLKIKGRD--VGFQTTKYGEFWRILLPGIYKLEVYA 366
++ + H GV+G V D GNP+ ++++ R ++T KYGE++ +LLPG Y + V
Sbjct: 290 YIKQVHLGVKGQVFDQNGNPLPNVIVEVQDRKHICPYRTNKYGEYYLLLLPGSYIINVTV 349
Query: 367 DGYVPREIDFMVVEQ 381
G+ P ++ E+
Sbjct: 350 PGHDPHITKVIIPEK 364
>pdb|1QMU|A Chain A, Duck Carboxypeptidase D Domain Ii
pdb|1H8L|A Chain A, Duck Carboxypeptidase D Domain Ii In Complex With Gemsa
Length = 380
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 309 FLAEAHRGVQGFVTDDL-GNPVEKASLKIKGRDVGFQTTKYGEFWRILLPGIYKLEVYAD 367
F+ + HRG+ GFV D G + A++ + + T K G++WR+L+ G YK+ A
Sbjct: 295 FIKQVHRGIWGFVLDATDGRGILNATISVADINHPVTTYKDGDYWRLLVQGTYKVTASAR 354
Query: 368 GYVP 371
GY P
Sbjct: 355 GYDP 358
>pdb|1EIJ|A Chain A, Nmr Ensemble Of Methanobacterium Thermoautotrophicum
Protein 1615
Length = 80
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 28 KNSILSQVLDQSARARLNTIMLCKPEKAQQIENMICQMAQTGQIMNKLGENELIGLLEQI 87
K I+ Q+L AR+RL + L +P+ +QIE + Q+AQ G++ +K+ + +L LL+++
Sbjct: 9 KKQIMMQILTPEARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKITDEQLKELLKRV 68
Query: 88 SNREEKKSSVKTPK 101
+ KK +K +
Sbjct: 69 AG---KKREIKISR 79
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 42/64 (65%)
Query: 234 KNSILSQVLDQSARARLNTIMLCKPEKAQQIENMICQMAQTGQIMNKLGENELIGLLEQI 293
K I+ Q+L AR+RL + L +P+ +QIE + Q+AQ G++ +K+ + +L LL+++
Sbjct: 9 KKQIMMQILTPEARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKITDEQLKELLKRV 68
Query: 294 SNRE 297
+ ++
Sbjct: 69 AGKK 72
>pdb|1K1X|A Chain A, Crystal Structure Of 4-Alpha-Glucanotransferase From
Thermococcus Litoralis
pdb|1K1X|B Chain B, Crystal Structure Of 4-Alpha-Glucanotransferase From
Thermococcus Litoralis
pdb|1K1Y|A Chain A, Crystal Structure Of Thermococcus Litoralis
4-Alpha-Glucanotransferase Complexed With Acarbose
pdb|1K1Y|B Chain B, Crystal Structure Of Thermococcus Litoralis
4-Alpha-Glucanotransferase Complexed With Acarbose
Length = 659
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 94 KSSVKTPKFWGQGGSYVSIFPIRWAIRHSTPYRP 127
K + P + GG +++FPI +R+ P+RP
Sbjct: 156 KEELFWPYYTEDGGEVITVFPIDEKLRYLIPFRP 189
>pdb|1K1W|A Chain A, Crystal Structure Of 4-Alpha-Glucanotransferase From
Thermococcus Litoralis
Length = 659
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 94 KSSVKTPKFWGQGGSYVSIFPIRWAIRHSTPYRP 127
K + P + GG +++FPI +R+ P+RP
Sbjct: 156 KEELFWPYYTEDGGEVITVFPIDEKLRYLIPFRP 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,180,091
Number of Sequences: 62578
Number of extensions: 387430
Number of successful extensions: 724
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 707
Number of HSP's gapped (non-prelim): 14
length of query: 440
length of database: 14,973,337
effective HSP length: 102
effective length of query: 338
effective length of database: 8,590,381
effective search space: 2903548778
effective search space used: 2903548778
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)