RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7340
(440 letters)
>gnl|CDD|216828 pfam01984, dsDNA_bind, Double-stranded DNA-binding domain. This
domain is believed to bind double-stranded DNA of 20
bases length.
Length = 105
Score = 111 bits (279), Expect = 1e-29
Identities = 37/91 (40%), Positives = 61/91 (67%)
Query: 8 GASGEQQKAAQERQEQIKDMKNSILSQVLDQSARARLNTIMLCKPEKAQQIENMICQMAQ 67
E+Q+ +E+Q+Q + K +IL Q+L AR RL+ I L KPE+A+ +EN + Q+AQ
Sbjct: 13 QGGLEEQQQQEEQQQQEEAQKQAILRQILTPEARERLSRIRLVKPERAEAVENQLIQLAQ 72
Query: 68 TGQIMNKLGENELIGLLEQISNREEKKSSVK 98
+G+I K+ E +L +LEQI+ ++ KK+ +K
Sbjct: 73 SGRIRGKITEEQLKEILEQIAPQKRKKTKIK 103
Score = 111 bits (279), Expect = 1e-29
Identities = 37/91 (40%), Positives = 61/91 (67%)
Query: 214 GASGEQQKAAQERQEQIKDMKNSILSQVLDQSARARLNTIMLCKPEKAQQIENMICQMAQ 273
E+Q+ +E+Q+Q + K +IL Q+L AR RL+ I L KPE+A+ +EN + Q+AQ
Sbjct: 13 QGGLEEQQQQEEQQQQEEAQKQAILRQILTPEARERLSRIRLVKPERAEAVENQLIQLAQ 72
Query: 274 TGQIMNKLGENELIGLLEQISNREEKKSSVK 304
+G+I K+ E +L +LEQI+ ++ KK+ +K
Sbjct: 73 SGRIRGKITEEQLKEILEQIAPQKRKKTKIK 103
>gnl|CDD|200604 cd11308, Peptidase_M14NE-CP-C_like, Peptidase associated domain:
C-terminal domain of M14 N/E carboxypeptidase; putative
folding, regulation, or interaction domain. This domain
is found C-terminal to the M14 carboxypeptidase (CP) N/E
subfamily containing zinc-binding enzymes that hydrolyze
single C-terminal amino acids from polypeptide chains,
and have a recognition site for the free C-terminal
carboxyl group, which is a key determinant of
specificity. The N/E subfamily includes enzymatically
active members (carboxypeptidase N, E, M, D, and Z), as
well as non-active members (carboxypeptidase-like
protein 1, -2, aortic CP-like protein, and adipocyte
enhancer binding protein-1) which lack the critical
active site and substrate-binding residues considered
necessary for activity. The active N/E enzymes fulfill a
variety of cellular functions, including prohormone
processing, regulation of peptide hormone activity,
alteration of protein-protein or protein-cell
interactions and transcriptional regulation. For M14
CPs, it has been suggested that this domain may assist
in folding of the CP domain, regulate enzyme activity,
or be involved in interactions with other proteins or
with membranes; for carboxypeptidase M, it may interact
with the bradykinin 1 receptor at the cell surface. This
domain may also be found in other peptidase families.
Length = 76
Score = 85.7 bits (213), Expect = 8e-21
Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 316 GVQGFVTDDLGNPVEKASLKIKGRDVGFQTTKYGEFWRILLPGIYKLEVYADGYVPREID 375
G++GFVTD GNP+ A++ ++G + T K G++WR+LLPG Y + A GY P
Sbjct: 1 GIKGFVTDATGNPIANATISVEGINHDVTTAKDGDYWRLLLPGTYNVTASAPGYQPVTKT 60
Query: 376 FMVVEQ-HPTLLNVTL 390
V T++N TL
Sbjct: 61 VTVPNNFSATVVNFTL 76
>gnl|CDD|225029 COG2118, COG2118, DNA-binding protein [General function prediction
only].
Length = 116
Score = 76.2 bits (188), Expect = 5e-17
Identities = 29/91 (31%), Positives = 56/91 (61%)
Query: 8 GASGEQQKAAQERQEQIKDMKNSILSQVLDQSARARLNTIMLCKPEKAQQIENMICQMAQ 67
+++ ++ +++ + K +IL Q+L AR RL + L +PE A+ +EN + Q+AQ
Sbjct: 22 KLEEQREAQEEQARQEEEAQKQAILRQILTPEARERLARVRLVRPELAEAVENQLIQLAQ 81
Query: 68 TGQIMNKLGENELIGLLEQISNREEKKSSVK 98
TG+I +K+ E EL +LE+IS + ++ ++
Sbjct: 82 TGRITHKIDEEELKEILERISPQTRREFKIR 112
Score = 76.2 bits (188), Expect = 5e-17
Identities = 29/91 (31%), Positives = 56/91 (61%)
Query: 214 GASGEQQKAAQERQEQIKDMKNSILSQVLDQSARARLNTIMLCKPEKAQQIENMICQMAQ 273
+++ ++ +++ + K +IL Q+L AR RL + L +PE A+ +EN + Q+AQ
Sbjct: 22 KLEEQREAQEEQARQEEEAQKQAILRQILTPEARERLARVRLVRPELAEAVENQLIQLAQ 81
Query: 274 TGQIMNKLGENELIGLLEQISNREEKKSSVK 304
TG+I +K+ E EL +LE+IS + ++ ++
Sbjct: 82 TGRITHKIDEEELKEILERISPQTRREFKIR 112
>gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional.
Length = 110
Score = 75.7 bits (187), Expect = 6e-17
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 8 GASGEQQKAAQERQEQIKDMKNSILSQVLDQSARARLNTIMLCKPEKAQQIENMICQMAQ 67
+ Q+ +E Q Q + K +IL Q+L AR RLN I L KPE A+Q+E + Q+AQ
Sbjct: 19 QEQQQAQEEQEEAQAQAEAQKQAILRQILTPEARERLNRIKLVKPEFAEQVEQQLIQLAQ 78
Query: 68 TGQIMNKLGENELIGLLEQISNR 90
+G+I + + +L +LEQ++ +
Sbjct: 79 SGRIQGPIDDEQLKEILEQLTPQ 101
Score = 75.7 bits (187), Expect = 6e-17
Identities = 31/83 (37%), Positives = 50/83 (60%)
Query: 214 GASGEQQKAAQERQEQIKDMKNSILSQVLDQSARARLNTIMLCKPEKAQQIENMICQMAQ 273
+ Q+ +E Q Q + K +IL Q+L AR RLN I L KPE A+Q+E + Q+AQ
Sbjct: 19 QEQQQAQEEQEEAQAQAEAQKQAILRQILTPEARERLNRIKLVKPEFAEQVEQQLIQLAQ 78
Query: 274 TGQIMNKLGENELIGLLEQISNR 296
+G+I + + +L +LEQ++ +
Sbjct: 79 SGRIQGPIDDEQLKEILEQLTPQ 101
>gnl|CDD|222268 pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like
domain.
Length = 81
Score = 57.3 bits (139), Expect = 1e-10
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 316 GVQGFVTDDLGNPVEKASLKIK----GRDVGFQTTKYGEFW-RILLPGIYKLEVYADGYV 370
+ G VTD G P+ A++ + G G T G F L PG Y L V A GY
Sbjct: 1 TISGTVTDASGAPIPGATVTLTNADTGTVRGTTTDADGRFSLTGLPPGTYTLTVSAPGYK 60
Query: 371 PREI-DFMVVEQHPTLLNVTL 390
+ + D V T L++TL
Sbjct: 61 SQTVKDVTVTAGQTTTLDITL 81
>gnl|CDD|222338 pfam13715, Cna_B_2, Cna protein B-type domain. This domain is
found in Staphylococcus aureus collagen-binding surface
protein. However, this region does not mediate collagen
binding, the pfam05737 region carries out that function.
The structure of the repetitive B-region has been solved
and forms a beta sandwich structure. It is thought that
this region forms a stalk in Staphylococcus aureus
collagen-binding protein that presents the ligand
binding domain away from the bacterial cell surface.
Length = 86
Score = 41.9 bits (99), Expect = 3e-05
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 317 VQGFVTD-DLGNPVEKASLKIKGRDVGFQTTKYGEFWRI-LLPGIYKLEVYADGYVPREI 374
++G V D D G P+ A++ +KG +VG T G F I + G Y L + GY + I
Sbjct: 2 IKGKVVDSDTGEPLPGATIFVKGSNVGTVTDADGNF-TIKVKEGDYTLVISYVGYKTKTI 60
Query: 375 DFMVVEQHPTLLNVTLHTS 393
+ + + L + L
Sbjct: 61 KVTLNKGNV--LTIVLEPD 77
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialised organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is
part of complex B but is not, however, required for the
core subunits to stay associated. This protein is known
as Huntington-interacting protein-1 in humans.
Length = 355
Score = 36.6 bits (85), Expect = 0.018
Identities = 37/170 (21%), Positives = 61/170 (35%), Gaps = 20/170 (11%)
Query: 137 ICEFILYQI-HKTLFRLGIFYSTPQGTGSTQE---HQKDSNPGLSEEVADEVVESGGDGG 192
I ++L + L + G + P+ E +D + EEV +EV D
Sbjct: 101 IVCYVLDDLADAALKKKGFSFKRPKYPNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDD 160
Query: 193 ENTSTRGRGGGLRGHVMRGGGGASGEQQKAAQERQEQIKDMK---NSILSQVLDQSARAR 249
E T G + Q K E + K +L Q L + +
Sbjct: 161 EGTQETKYK---------RGDTSLTPQAKDVLESLIDAAEWKLEVERVLPQ-LKVTIKTD 210
Query: 250 LNTIMLCKPEKAQQIENMIC-QMAQTGQIMNKLGENELIGLLEQISNREE 298
E+ Q++ I + +T Q + KL +L LE+IS+RE+
Sbjct: 211 -AKDWRSHLEQMHQLKKAISKSLPETKQYLKKLS-QDLSKALEKISSREK 258
>gnl|CDD|219430 pfam07495, Y_Y_Y, Y_Y_Y domain. This domain is mostly found at the
end of the beta propellers (pfam07494) in a family of
two component regulators. However they are also found
tandemly repeated in Clostridium tetani CTC_02402
without other signal conduction domains being present.
It's named after the conserved tyrosines found in the
alignment. The exact function is not known.
Length = 64
Score = 29.6 bits (67), Expect = 0.39
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Query: 344 QTTKYGEF-WRILLPGIYKLEVYA------DGYVPREIDFMV 378
+ Y E + L PG Y L+V A Y ++F +
Sbjct: 22 ELGDYSEASYTNLPPGKYTLKVKAKDNDGNWSYDDASLNFTI 63
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein;
Provisional.
Length = 182
Score = 30.9 bits (70), Expect = 0.89
Identities = 14/49 (28%), Positives = 15/49 (30%), Gaps = 5/49 (10%)
Query: 186 ESGGDGGENTSTRGRGGGLRGHVMRGGGGAS-----GEQQKAAQERQEQ 229
G +GG G GGG G GGGG G R
Sbjct: 119 GGGDEGGYGGGGGGGGGGYGGESRSGGGGGRASGGGGGGAGGGASRPSA 167
Score = 29.0 bits (65), Expect = 3.6
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 187 SGGDGGENTSTRGRGGGLRGHVMRGGGGASGEQQKAAQERQEQIKDMKNSI 237
GG G S G GGG GGGGA G + + +M + I
Sbjct: 132 GGGGGYGGESRSGGGGGRASG--GGGGGAGGGASRPSAPAGGGFDEMDDDI 180
>gnl|CDD|234450 TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein,
SusC/RagA family. This model describes a distinctive
clade among the TonB-linked outer membrane proteins
(OMP). Members of this family are restricted to the
Bacteriodetes lineage (except for Gemmatimonas
aurantiaca T-27 from the novel phylum Gemmatimonadetes)
and occur in high copy numbers, with over 100 members
from Bacteroides thetaiotaomicron VPI-5482 alone.
Published descriptions of members of this family are
available for RagA from Porphyromonas gingivalis, SusC
from Bacteroides thetaiotaomicron, and OmpW from
Bacteroides caccae. Members form pairs with members of
the SusD/RagB family (pfam07980). Transporter complexes
including these outer membrane proteins are likely to
import large degradation products of proteins (e.g.
RagA) or carbohydrates (e.g. SusC) as nutrients, rather
than siderophores [Transport and binding proteins,
Unknown substrate].
Length = 982
Score = 31.8 bits (73), Expect = 0.92
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 317 VQGFVTDDLGNPVEKASLKIKGRDVGFQTTKYGEFWRILLPGIYKLEVYADGYVPREIDF 376
V G V D+ G P+ AS+ +KG G T G F + +P L GY +E+
Sbjct: 3 VTGVVVDETGEPLIGASVVVKGTTNGTITDIDGNF-SLKVPPGAVLVFSYIGYKTQEVK- 60
Query: 377 MVVEQHPTLLNVTL 390
V Q LN+TL
Sbjct: 61 -VKGQ--KNLNITL 71
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 31.8 bits (72), Expect = 1.0
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 3 GVGGGGASGEQQKAAQERQEQIKDMKNSILSQVLDQSARARLNTIMLCKPEKAQQIENMI 62
GG S E ++ A++ Q K M + L+ L AR RL +A+ IE M+
Sbjct: 945 YADAGGLSPETRRLAEDALRQAKAMAAAKLTDELSPEARERLR-------ARARAIEAML 997
Score = 30.7 bits (69), Expect = 1.8
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 212 GGGASGEQQKAAQERQEQIKDMKNSILSQVLDQSARARLNTIMLCKPEKAQQIENMI 268
GG S E ++ A++ Q K M + L+ L AR RL +A+ IE M+
Sbjct: 948 AGGLSPETRRLAEDALRQAKAMAAAKLTDELSPEARERLR-------ARARAIEAML 997
>gnl|CDD|227571 COG5246, PRP11, Splicing factor 3a, subunit 2 [RNA processing and
modification].
Length = 222
Score = 30.4 bits (68), Expect = 1.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 205 RGHVMRGGGGASGEQQKAAQERQEQIK 231
RG GGGG + E +K + R Q+
Sbjct: 6 RGGSKTGGGGTASEIKKNKKRRSRQLL 32
Score = 28.1 bits (62), Expect = 7.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 5 GGGGASGEQQKAAQERQEQIK 25
GGGG + E +K + R Q+
Sbjct: 12 GGGGTASEIKKNKKRRSRQLL 32
>gnl|CDD|223342 COG0264, Tsf, Translation elongation factor Ts [Translation,
ribosomal structure and biogenesis].
Length = 296
Score = 30.3 bits (69), Expect = 1.8
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 27/107 (25%)
Query: 227 QEQIKDMKNSILSQVLDQSARARLNTIMLCKPEKAQQIENMICQMAQTGQIMNK-LGENE 285
E ++ + L+Q+ + KPE +E ++ G MNK L E
Sbjct: 202 AEVVEKEREIFLAQLKAEG-----------KPENI--VEKIV-----EG-RMNKFLAEVC 242
Query: 286 LIGLLEQISNREEKKSSVKSLVKFLAEAHRGVQGFVTDDLGNPVEKA 332
L LEQ ++ KK+ V+ + L EA+ V FV ++G +EK
Sbjct: 243 L---LEQPFVKDPKKT-VE---QLLKEANAKVTEFVRFEVGEGIEKK 282
>gnl|CDD|147119 pfam04802, SMK-1, Component of IIS longevity pathway SMK-1. SMK-1
is a component of the IIs longevity pathway which
regulates aging in C.elegans. Specifically, SMK-1
influences DAF-16-dependant regulation of the aging
process by regulating the transcriptional specificity of
DAF-16 activity. SMK-1 plays a role in longevity by
modulating the transcriptional specificity of DAF-16.
Length = 193
Score = 28.7 bits (65), Expect = 4.0
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 17/84 (20%)
Query: 230 IKDMKNSILSQVLDQSARARLNTIMLCKPEKAQQIENMICQMAQTGQIMNKLGENELIGL 289
+KD+ +L +VLD + + LN+ + Q+E I + Q E L L
Sbjct: 108 LKDV---VLPRVLDDNTFSTLNSFIFF-----NQVE--IVTLLQD-------DEKFLEEL 150
Query: 290 LEQISNREEKKSSVKSLVKFLAEA 313
+++ + LV FL E
Sbjct: 151 FALLTDSSTSDERRRDLVLFLHEF 174
>gnl|CDD|236335 PRK08724, fliD, flagellar capping protein; Validated.
Length = 673
Score = 29.5 bits (66), Expect = 4.5
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 7/106 (6%)
Query: 171 DSNPGLSEEVADEVVESGGD--GGENTSTRGRGGGLRGHVMRGGGGASGEQQKAAQERQE 228
DS P EE+ + + D G NT++ G L + + +QK AQE+ +
Sbjct: 323 DSYPEPEEELDEAAIAKAPDVPGWSNTAS----GTLTDSYVTPKEAQAEIEQKLAQEKAQ 378
Query: 229 -QIKDMKNSILSQVLDQSARARLNTIMLCKPEKAQQIENMICQMAQ 273
K + + Q ARA+L + EK + + + Q
Sbjct: 379 LDAAVEKGELTPEQAKQIARAKLEPEERERLEKIDKAQAALKQAQS 424
>gnl|CDD|185262 PRK15364, PRK15364, pathogenicity island 2 effector protein SseB;
Provisional.
Length = 196
Score = 28.9 bits (64), Expect = 4.6
Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 10/115 (8%)
Query: 291 EQISNREEKKSSVKSLVKFLAEAHRGVQGFVTDDLGNPVEKASLKIKGRDVGFQTTKYGE 350
E+ N +EK + + ++ A+ + V +D+ + + I G + KYG+
Sbjct: 69 ERARNTQEKSNEMDEVIAKAAKGDAKTKEEVPEDVIKYMRDNGILIDGMTIDDYMAKYGD 128
Query: 351 FWRILLPGIYKLEVYADGYVPREIDFM-----VVEQHPTLLNVTLHT-----SKW 395
++ G+ ++ D R D M +++ LN L SKW
Sbjct: 129 HGKLDKGGLQAIKAALDNDANRNTDLMSQGQITIQKMSQELNAVLTQLTGLISKW 183
>gnl|CDD|221018 pfam11186, DUF2972, Protein of unknown function (DUF2972). Some
members in this family of proteins with unknown function
are annotated as sugar transferase proteins, however
this cannot be confirmed.
Length = 197
Score = 28.4 bits (64), Expect = 6.5
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 224 QERQEQIKDMKNSILSQVLDQSARARLNTIMLCKPEKAQQIENMICQMAQTGQIMNKLGE 283
E +E D+ + ++ N I+ K E + ++ + + + K
Sbjct: 74 LEIKENYIDITKELFNKNDILD-----NIIICIKKEDFEILKQDEKLFKKIKKYLKKF-- 126
Query: 284 NELIGLLEQISNREEKKSSVKSLVKFLAE 312
+ L +Q+ E KK K ++++L E
Sbjct: 127 --IEALEKQVKIEESKKLKEKDVLEYLKE 153
>gnl|CDD|216091 pfam00740, Parvo_coat, Parvovirus coat protein VP2. This protein,
together with VP1 forms a capsomer. Both of these
proteins are formed from the same transcript using
alternative splicing. As a result, VP1 and VP2 differ
only in the N-terminal region of VP1. VP2 is involved in
packaging the viral DNA.
Length = 505
Score = 28.8 bits (65), Expect = 6.7
Identities = 11/56 (19%), Positives = 18/56 (32%)
Query: 154 IFYSTPQGTGSTQEHQKDSNPGLSEEVADEVVESGGDGGENTSTRGRGGGLRGHVM 209
F + P+ G T + + SEE + D T +GG +
Sbjct: 329 TFDAKPEEAGRTTQQDFNQRLPTSEEEILQTNGVNVDNYGLLPTNPQGGKTDQNYT 384
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 28.6 bits (63), Expect = 8.5
Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 14/121 (11%)
Query: 218 EQQKAAQERQEQIKDMKNSILSQVLDQSARARLNTIM-LCKPEKAQQIENMICQMAQTGQ 276
E++KA + ++ + ++ ++ AR+ +M L + EK + E
Sbjct: 1562 EKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA--------- 1612
Query: 277 IMNKLGENELIGLLEQISNREEKKSSVKSLVKFLAEAHRGVQGFVTDDLGNPVEKASLKI 336
K E I E++ EE+K V+ L K AE + + + N ++ A
Sbjct: 1613 ---KKAEEAKIKA-EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAK 1668
Query: 337 K 337
K
Sbjct: 1669 K 1669
>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated.
Length = 328
Score = 28.4 bits (63), Expect = 8.9
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 323 DDLGNPVEKASLKIKGRDVGFQTTKYGEFWRILLPGIY 360
D+L +K +LK V ++TT+ G+ W +L+ G+Y
Sbjct: 259 DNLNGWAKKENLK---NYVVYETTRNGQPWYVLVSGVY 293
>gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only].
Length = 411
Score = 28.4 bits (64), Expect = 9.1
Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 12/61 (19%)
Query: 191 GGENTSTRGRGGGLRGHVMRGGGGASGEQQKAAQER--QEQIKDMKNSILSQVLDQSARA 248
G + S G G G RG GE Q R + +I +K L V
Sbjct: 134 SGSHLSRLGGGIGFRG---------PGETQLETDRRRIRRRIAKLKRE-LENVEKAREPR 183
Query: 249 R 249
R
Sbjct: 184 R 184
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.385
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,956,060
Number of extensions: 2116307
Number of successful extensions: 2435
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2411
Number of HSP's successfully gapped: 53
Length of query: 440
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 340
Effective length of database: 6,502,202
Effective search space: 2210748680
Effective search space used: 2210748680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)