RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7340
(440 letters)
>d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 109 bits (273), Expect = 1e-29
Identities = 41/90 (45%), Positives = 61/90 (67%)
Query: 9 ASGEQQKAAQERQEQIKDMKNSILSQVLDQSARARLNTIMLCKPEKAQQIENMICQMAQT 68
A QE + + +M+NSIL+QVLDQSARARL+ + L KPEK + +EN + QMA+
Sbjct: 13 HGDPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARY 72
Query: 69 GQIMNKLGENELIGLLEQISNREEKKSSVK 98
GQ+ K+ E LI +L+++S + EK ++VK
Sbjct: 73 GQLSEKVSEQGLIEILKKVSQQTEKTTTVK 102
Score = 109 bits (273), Expect = 1e-29
Identities = 41/90 (45%), Positives = 61/90 (67%)
Query: 215 ASGEQQKAAQERQEQIKDMKNSILSQVLDQSARARLNTIMLCKPEKAQQIENMICQMAQT 274
A QE + + +M+NSIL+QVLDQSARARL+ + L KPEK + +EN + QMA+
Sbjct: 13 HGDPGDAAQQEAKHREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARY 72
Query: 275 GQIMNKLGENELIGLLEQISNREEKKSSVK 304
GQ+ K+ E LI +L+++S + EK ++VK
Sbjct: 73 GQLSEKVSEQGLIEILKKVSQQTEKTTTVK 102
>d1eija_ a.5.6.1 (A:) Hypothetical protein MTH1615 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 72
Score = 92.1 bits (229), Expect = 7e-24
Identities = 22/71 (30%), Positives = 47/71 (66%)
Query: 21 QEQIKDMKNSILSQVLDQSARARLNTIMLCKPEKAQQIENMICQMAQTGQIMNKLGENEL 80
++Q++ K I+ Q+L AR+RL + L +P+ +QIE + Q+AQ G++ +K+ + +L
Sbjct: 2 RQQLEMQKKQIMMQILTPEARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKITDEQL 61
Query: 81 IGLLEQISNRE 91
LL++++ ++
Sbjct: 62 KELLKRVAGKK 72
Score = 92.1 bits (229), Expect = 7e-24
Identities = 22/71 (30%), Positives = 47/71 (66%)
Query: 227 QEQIKDMKNSILSQVLDQSARARLNTIMLCKPEKAQQIENMICQMAQTGQIMNKLGENEL 286
++Q++ K I+ Q+L AR+RL + L +P+ +QIE + Q+AQ G++ +K+ + +L
Sbjct: 2 RQQLEMQKKQIMMQILTPEARSRLANLRLTRPDFVEQIELQLIQLAQMGRVRSKITDEQL 61
Query: 287 IGLLEQISNRE 297
LL++++ ++
Sbjct: 62 KELLKRVAGKK 72
>d1h8la1 b.3.2.1 (A:305-383) Carboxypeptidase D C-terminal domain
{Crested duck (Lophonetta specularioides) [TaxId: 8836]}
Length = 79
Score = 55.2 bits (132), Expect = 1e-10
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 316 GVQGFVTD-DLGNPVEKASLKIKGRDVGFQTTKYGEFWRILLPGIYKLEVYADGYVPREI 374
G+ GFV D G + A++ + + T K G++WR+L+ G YK+ A GY P
Sbjct: 1 GIWGFVLDATDGRGILNATISVADINHPVTTYKDGDYWRLLVQGTYKVTASARGYDPVTK 60
Query: 375 DFMVVEQHPTLLNVTLHTS 393
V + +N TL +
Sbjct: 61 TVEVDSKGGVQVNFTLSRT 79
>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 50.6 bits (120), Expect = 1e-08
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 316 GVQGFVTDDLGNPVEKASLKIKGRDVG-FQTTKYGEFWRIL-LPGIYKLEVYADGYVPRE 373
GV+G V D GNP+ ++++ R T + +L LPG Y + V G+ P
Sbjct: 1 GVKGQVFDQNGNPLPNVIVEVQDRKHICPYRTNKYGEYYLLLLPGSYIINVTVPGHDPHI 60
Query: 374 IDFMVVEQHPTLLNVTL 390
++ E+ +
Sbjct: 61 TKVIIPEKSQNFSALKK 77
>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle
domain {Aspergillus aculeatus [TaxId: 5053]}
Length = 87
Score = 37.4 bits (86), Expect = 3e-04
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 2/84 (2%)
Query: 309 FLAEAHRG-VQGFVTDDLGNPVEKASLKIKGRDVGFQTTKYGEF-WRILLPGIYKLEVYA 366
++A + RG V G + + T+ G F + PG Y + Y
Sbjct: 1 YVAASGRGKVAGTASGADSSMDWVVHWYNDAAQYWTYTSSSGSFTSPAMKPGTYTMVYYQ 60
Query: 367 DGYVPREIDFMVVEQHPTLLNVTL 390
Y V T N++
Sbjct: 61 GEYAVATSSVTVSAGSTTTKNISG 84
>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit
10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}
Length = 223
Score = 33.0 bits (74), Expect = 0.041
Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 7/130 (5%)
Query: 61 MICQMAQTGQIMNKLGENELIGLLEQISNREEKKSSVKTPKFWGQGGSYVSIFPIRWAIR 120
M+C +A +G++ +L E+ +L S +T W + I +
Sbjct: 6 MVCNLAYSGKL-EELKES----ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 60
Query: 121 HSTPYRPSCRDAFLFIICEFILYQIHKTLFRLGIFYSTPQGTGSTQEHQKDSNPGLSEEV 180
+ + L I +I K L G + G T H S E+
Sbjct: 61 VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKN--RHEI 118
Query: 181 ADEVVESGGD 190
A ++E G +
Sbjct: 119 AVMLLEGGAN 128
>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1
[TaxId: 1911]}
Length = 223
Score = 28.5 bits (62), Expect = 1.3
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 405 VGGSSPTLGFFPYKVALDH--GEALVNEE 431
VGG+ G FP+ V L G AL ++
Sbjct: 2 VGGTRAAQGEFPFMVRLSMGCGGALYAQD 30
>d2jf2a1 b.81.1.1 (A:1-262) UDP N-acetylglucosamine acyltransferase
{Escherichia coli, gene lpxA [TaxId: 562]}
Length = 262
Score = 28.3 bits (62), Expect = 1.9
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 247 RARLNTIMLCKPEKAQQIENMICQMAQTGQIMNKLGENELIGLLEQISNREEKKSSVKSL 306
A + + ++ I + +++ + G+ L + +I+ E VK+
Sbjct: 191 HATPFGVNIEGLKRRGFSREAITAIRNAYKLIYRSGKT-LDEVKPEIAELAETYPEVKAF 249
Query: 307 VKFLAEAHRGV 317
F A + RG+
Sbjct: 250 TDFFARSTRGL 260
>d1gmua1 b.107.1.1 (A:1-70) Urease metallochaperone UreE, N-terminal
domain {Klebsiella aerogenes [TaxId: 28451]}
Length = 70
Score = 25.5 bits (56), Expect = 3.0
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 414 FFPYKVALDHGEALVNEEGCVLVQ 437
P + L G+ L NEEG VQ
Sbjct: 43 LLPRGLLLRGGDVLSNEEGTEFVQ 66
>d2oeza1 e.68.1.1 (A:1-245) Uncharacterized protein VP2528 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 245
Score = 26.7 bits (59), Expect = 5.8
Identities = 11/91 (12%), Positives = 28/91 (30%), Gaps = 19/91 (20%)
Query: 12 EQQKAAQERQEQIKDMKNSILSQVLDQSARARLNTIMLCKPEKAQQIENMICQMAQTGQI 71
E+Q+ + ++ + L+ +L++ I+ + Q+ +
Sbjct: 67 EKQRLSYRHWLNVEGVDQEALNSLLNE-------------------IDVVHSQLMGAERF 107
Query: 72 MNKLGENELIGLLEQISNREEKKSSVKTPKF 102
L E+ + + Q N P
Sbjct: 108 GQALKEDRFLSSIRQRFNLPGGSCCFDLPAL 138
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.385
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,525,603
Number of extensions: 69081
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 17
Length of query: 440
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 352
Effective length of database: 1,199,356
Effective search space: 422173312
Effective search space used: 422173312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.8 bits)