BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7342
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O8Q|A Chain A, The Active Site Of The Molybdenum Cofactor Biosenthetic
Protein Domain Cnx1g
pdb|1O8Q|B Chain B, The Active Site Of The Molybdenum Cofactor Biosenthetic
Protein Domain Cnx1g
pdb|1O8Q|C Chain C, The Active Site Of The Molybdenum Cofactor Biosenthetic
Protein Domain Cnx1g
pdb|1O8Q|D Chain D, The Active Site Of The Molybdenum Cofactor Biosenthetic
Protein Domain Cnx1g
pdb|1O8Q|E Chain E, The Active Site Of The Molybdenum Cofactor Biosenthetic
Protein Domain Cnx1g
pdb|1O8Q|F Chain F, The Active Site Of The Molybdenum Cofactor Biosenthetic
Protein Domain Cnx1g
pdb|1O8Q|G Chain G, The Active Site Of The Molybdenum Cofactor Biosenthetic
Protein Domain Cnx1g
pdb|1O8Q|H Chain H, The Active Site Of The Molybdenum Cofactor Biosenthetic
Protein Domain Cnx1g
Length = 167
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 67/111 (60%), Gaps = 4/111 (3%)
Query: 206 VSDRCFNKESEDKSGPLLAQLL---QEDFQHAHILKTCV-PDEMEEIKDKLKYWVDQSKV 261
VSD D+SGP ++ E A ++ T V PDE+E IKD L+ W D ++
Sbjct: 13 VSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEM 72
Query: 262 DLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR 312
DLI T GGTG +PRDVTPEA +I+++ P + ++ E LK+TP AMLSR
Sbjct: 73 DLILTLGGTGFTPRDVTPEATKKVIERETPGLLFVMMQEALKITPFAMLSR 123
>pdb|1UUX|A Chain A, Structure Of A Molybdopterin-Bound Cnx1g Domain Links
Molybdenum And Copper Metabolism
Length = 163
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 67/111 (60%), Gaps = 4/111 (3%)
Query: 206 VSDRCFNKESEDKSGPLLAQLL---QEDFQHAHILKTCV-PDEMEEIKDKLKYWVDQSKV 261
VSD D+SGP ++ E A ++ T V PDE+E IKD L+ W D ++
Sbjct: 13 VSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEM 72
Query: 262 DLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR 312
DLI T GGTG +PRDVTPEA +I+++ P + ++ E LK+TP AMLSR
Sbjct: 73 DLILTLGGTGFTPRDVTPEATKKVIERETPGLLFVMMQESLKITPFAMLSR 123
>pdb|1JLJ|A Chain A, 1.6 Angstrom Crystal Structure Of The Human Neuroreceptor
Anchoring And Molybdenum Cofactor Biosynthesis Protein
Gephyrin
pdb|1JLJ|B Chain B, 1.6 Angstrom Crystal Structure Of The Human Neuroreceptor
Anchoring And Molybdenum Cofactor Biosynthesis Protein
Gephyrin
pdb|1JLJ|C Chain C, 1.6 Angstrom Crystal Structure Of The Human Neuroreceptor
Anchoring And Molybdenum Cofactor Biosynthesis Protein
Gephyrin
Length = 189
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 206 VSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKT--CVPDEMEEIKDKLKYWVDQSKVDL 263
VSD CF +ED+SG L L+Q+ + VPDE+EEIK+ L W D+ +++L
Sbjct: 22 VSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNL 81
Query: 264 IFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR 312
I T+GGTG +PRDVTPEA +I+++ P + + L VTPL MLSR
Sbjct: 82 ILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSLNVTPLGMLSR 130
>pdb|1UUY|A Chain A, Structure Of A Molybdopterin-Bound Cnx1g Domain Links
Molybdenum And Copper Metabolism
Length = 167
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 67/111 (60%), Gaps = 4/111 (3%)
Query: 206 VSDRCFNKESEDKSGPLLAQLL---QEDFQHAHILKTCV-PDEMEEIKDKLKYWVDQSKV 261
VSD D+SGP ++ E A ++ T V PDE+E IKD L+ W D ++
Sbjct: 13 VSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEM 72
Query: 262 DLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR 312
DLI T GGTG +PRDVTPEA +I+++ P + ++ E LK+TP AML+R
Sbjct: 73 DLILTLGGTGFTPRDVTPEATKKVIERETPGLLFVMMQESLKITPFAMLAR 123
>pdb|1IHC|A Chain A, X-Ray Structure Of Gephyrin N-Terminal Domain
Length = 188
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 206 VSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKT--CVPDEMEEIKDKLKYWVDQSKVDL 263
VSD CF +ED+SG L L+Q+ + VPDE+EEIK+ L W D+ +++L
Sbjct: 22 VSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNL 81
Query: 264 IFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR 312
I T+GGTG +PRDVTPEA +I+++ P + + L VTPL MLSR
Sbjct: 82 ILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSLNVTPLGMLSR 130
>pdb|1O8N|A Chain A, The Active Site Of The Molybdenum Cofactor Biosynthetic
Protein Domain Cnx1g
pdb|1O8N|B Chain B, The Active Site Of The Molybdenum Cofactor Biosynthetic
Protein Domain Cnx1g
pdb|1O8N|C Chain C, The Active Site Of The Molybdenum Cofactor Biosynthetic
Protein Domain Cnx1g
Length = 167
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Query: 206 VSDRCFNKESEDKSGPLLAQLL---QEDFQHAHILKTCV-PDEMEEIKDKLKYWVDQSKV 261
VSD D+SGP ++ E A ++ T V PDE+E IKD L+ W D ++
Sbjct: 13 VSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEM 72
Query: 262 DLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR 312
DLI T GG G +PRDVTPEA +I+++ P + ++ E LK+TP AMLSR
Sbjct: 73 DLILTLGGAGFTPRDVTPEATKKVIERETPGLLFVMMQESLKITPFAMLSR 123
>pdb|1O8O|A Chain A, The Active Site Of The Molybdenum Cofactor Biosynthetic
Protein Domain Cnx1g
pdb|1O8O|B Chain B, The Active Site Of The Molybdenum Cofactor Biosynthetic
Protein Domain Cnx1g
pdb|1O8O|C Chain C, The Active Site Of The Molybdenum Cofactor Biosynthetic
Protein Domain Cnx1g
Length = 167
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Query: 206 VSDRCFNKESEDKSGPLLAQLL---QEDFQHAHILKTCV-PDEMEEIKDKLKYWVDQSKV 261
VSD D+SGP ++ E A ++ T V PDE+E IKD L+ W D ++
Sbjct: 13 VSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEM 72
Query: 262 DLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR 312
DLI T GG G +PRDVTPEA +I+++ P + ++ E LK+TP AMLSR
Sbjct: 73 DLILTLGGDGFTPRDVTPEATKKVIERETPGLLFVMMQESLKITPFAMLSR 123
>pdb|1EAV|A Chain A, Crystal Structures Of Human Gephyrin And Plant Cnx1 G
Domains - Comparative Analysis And Functional
Implications
pdb|1EAV|B Chain B, Crystal Structures Of Human Gephyrin And Plant Cnx1 G
Domains - Comparative Analysis And Functional
Implications
pdb|1EAV|C Chain C, Crystal Structures Of Human Gephyrin And Plant Cnx1 G
Domains - Comparative Analysis And Functional
Implications
pdb|1EAV|D Chain D, Crystal Structures Of Human Gephyrin And Plant Cnx1 G
Domains - Comparative Analysis And Functional
Implications
pdb|1EAV|E Chain E, Crystal Structures Of Human Gephyrin And Plant Cnx1 G
Domains - Comparative Analysis And Functional
Implications
pdb|1EAV|F Chain F, Crystal Structures Of Human Gephyrin And Plant Cnx1 G
Domains - Comparative Analysis And Functional
Implications
pdb|1EAV|G Chain G, Crystal Structures Of Human Gephyrin And Plant Cnx1 G
Domains - Comparative Analysis And Functional
Implications
pdb|1EAV|H Chain H, Crystal Structures Of Human Gephyrin And Plant Cnx1 G
Domains - Comparative Analysis And Functional
Implications
Length = 162
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Query: 206 VSDRCFNKESEDKSGPLLAQLL---QEDFQHAHILKTCV-PDEMEEIKDKLKYWVDQSKV 261
VSD D+SGP ++ E A ++ T V PDE+E IKD L+ W D +
Sbjct: 13 VSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEX 72
Query: 262 DLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR 312
DLI T GGTG +PRDVTPEA +I+++ P + + E LK+TP A LSR
Sbjct: 73 DLILTLGGTGFTPRDVTPEATKKVIERETPGLLFVXXQESLKITPFAXLSR 123
>pdb|2IS8|A Chain A, Crystal Structure Of The Molybdopterin Biosynthesis Enzyme
Moab (Ttha0341) From Thermus Theromophilus Hb8
pdb|2IS8|B Chain B, Crystal Structure Of The Molybdopterin Biosynthesis Enzyme
Moab (Ttha0341) From Thermus Theromophilus Hb8
pdb|2IS8|C Chain C, Crystal Structure Of The Molybdopterin Biosynthesis Enzyme
Moab (Ttha0341) From Thermus Theromophilus Hb8
pdb|3MCH|A Chain A, Crystal Structure Of The Molybdopterin Biosynthesis Enzyme
Moab (Ttha0341) From Thermus Theromophilus Hb8
pdb|3MCH|B Chain B, Crystal Structure Of The Molybdopterin Biosynthesis Enzyme
Moab (Ttha0341) From Thermus Theromophilus Hb8
pdb|3MCH|C Chain C, Crystal Structure Of The Molybdopterin Biosynthesis Enzyme
Moab (Ttha0341) From Thermus Theromophilus Hb8
Length = 164
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 67/108 (62%), Gaps = 3/108 (2%)
Query: 206 VSDRCFNKESEDKSGPLLAQLLQED-FQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLI 264
VSD+ F E +D + + ++L F+ A VPDE IK L+ W D+ +DLI
Sbjct: 9 VSDKGFRGERQDTTHLAIREVLAGGPFEVAAY--ELVPDEPPMIKKVLRLWADREGLDLI 66
Query: 265 FTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR 312
T+GGTG++PRD TPEA L+D++VP + +++ GL+ TP+A LSR
Sbjct: 67 LTNGGTGLAPRDRTPEATRELLDREVPGLAELMRLVGLRKTPMAALSR 114
>pdb|2PBQ|A Chain A, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) From Aquifex Aeolicus Vf5
pdb|2PBQ|B Chain B, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) From Aquifex Aeolicus Vf5
pdb|2PBQ|C Chain C, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) From Aquifex Aeolicus Vf5
pdb|2QQ1|A Chain A, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) Other Form From Aquifex Aeolicus Vf5
pdb|2QQ1|B Chain B, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) Other Form From Aquifex Aeolicus Vf5
pdb|2QQ1|C Chain C, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) Other Form From Aquifex Aeolicus Vf5
pdb|2QQ1|D Chain D, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) Other Form From Aquifex Aeolicus Vf5
pdb|2QQ1|E Chain E, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) Other Form From Aquifex Aeolicus Vf5
pdb|2QQ1|F Chain F, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) Other Form From Aquifex Aeolicus Vf5
pdb|3MCI|A Chain A, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) From Aquifex Aeolicus Vf5
pdb|3MCI|B Chain B, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) From Aquifex Aeolicus Vf5
pdb|3MCI|C Chain C, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) From Aquifex Aeolicus Vf5
pdb|3MCJ|A Chain A, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) Other Form From Aquifex Aeolicus Vf5
pdb|3MCJ|B Chain B, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) Other Form From Aquifex Aeolicus Vf5
pdb|3MCJ|C Chain C, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) Other Form From Aquifex Aeolicus Vf5
pdb|3MCJ|D Chain D, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) Other Form From Aquifex Aeolicus Vf5
pdb|3MCJ|E Chain E, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) Other Form From Aquifex Aeolicus Vf5
pdb|3MCJ|F Chain F, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) Other Form From Aquifex Aeolicus Vf5
Length = 178
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 5/117 (4%)
Query: 206 VSDRCFNKESEDKSGPLLAQLLQE-DFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLI 264
+SDR ED SG + L++ + +PDE + I+ L D+ LI
Sbjct: 13 ISDRASKGIYEDISGKAIIDYLKDVIITPFEVEYRVIPDERDLIEKTLIELADEKGCSLI 72
Query: 265 FTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR----FKGNC 317
T+GGTG +PRDVTPEA + +K +P +++ LK P A+LSR +G+C
Sbjct: 73 LTTGGTGPAPRDVTPEATEAVCEKMLPGFGELMRQVSLKQVPTAILSRQTAGIRGSC 129
>pdb|3RFQ|A Chain A, Crystal Structure Of Pterin-4-Alpha-Carbinolamine
Dehydratase Moab2 From Mycobacterium Marinum
pdb|3RFQ|B Chain B, Crystal Structure Of Pterin-4-Alpha-Carbinolamine
Dehydratase Moab2 From Mycobacterium Marinum
pdb|3RFQ|C Chain C, Crystal Structure Of Pterin-4-Alpha-Carbinolamine
Dehydratase Moab2 From Mycobacterium Marinum
Length = 185
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 8/108 (7%)
Query: 208 DRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEE--IKDKLKYWVDQSKVDLIF 265
DR + + ED SGPL+ +LL E ++ V E +E I++ L V VDL+
Sbjct: 40 DRTAHGD-EDHSGPLVTELLTE---AGFVVDGVVAVEADEVDIRNALNTAV-IGGVDLVV 94
Query: 266 TSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPL-AMLSR 312
+ GGTG++PRDVTPE+ ++D+++ I I+ GL + A LSR
Sbjct: 95 SVGGTGVTPRDVTPESTREILDREILGIAEAIRASGLSAGIIDAGLSR 142
>pdb|3OI9|A Chain A, Crystal Structure Of Molybdenum Cofactor Synthesis Domain
From Mycobacterium Avium
Length = 164
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Query: 205 LVSDRCFNKESEDKSGPLLAQ-LLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDL 263
+ S R + E ED+ GP++ + L Q+ F A V D + + L+ +D VD+
Sbjct: 14 IASTRASSGEYEDRCGPIITEWLAQQGFSSAQ--PEVVADG-SPVGEALRKAIDD-DVDV 69
Query: 264 IFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSRFKGNCPKKWVK 323
I TSGGTG++P D TP+ ++D +P + I+ GL P ++LSR G C
Sbjct: 70 ILTSGGTGIAPTDSTPDQTVAVVDYLIPGLAEAIRQSGLPKVPTSVLSR--GVCGVAGQT 127
Query: 324 LI 325
LI
Sbjct: 128 LI 129
>pdb|3PZY|A Chain A, Crystal Structure Of Molybdopterin Biosynthesis Mog
Protein From Mycobacterium Paratuberculosis
Length = 164
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Query: 205 LVSDRCFNKESEDKSGPLLAQ-LLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDL 263
+ S R + E ED+ GP++ + L Q+ F A V D + + L+ +D VD+
Sbjct: 14 IASTRASSGEYEDRCGPIITEWLAQQGFSSAQ--PEVVADG-SPVGEALRKAIDD-DVDV 69
Query: 264 IFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSRFKGNCPKKWVK 323
I TSGGTG++P D TP+ ++D +P + I+ GL P ++LSR G C
Sbjct: 70 ILTSGGTGIAPTDSTPDQTVAVVDYLIPGLAEAIRRSGLPKVPTSVLSR--GVCGVAGQT 127
Query: 324 LI 325
LI
Sbjct: 128 LI 129
>pdb|3K6A|A Chain A, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|3K6A|B Chain B, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|3K6A|C Chain C, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|3K6A|D Chain D, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|3K6A|E Chain E, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|3K6A|F Chain F, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
Length = 180
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 203 LALVSDRCFNKESEDKSGPLLAQLLQEDFQHA-HILKTCVPDEMEEIKDKLKYWVDQSKV 261
+ VSDR ED SG + L + + +PDE + I+ L D+
Sbjct: 11 IVTVSDRASAGIYEDISGKAIIDTLNDYLTSEWEPIYQVIPDEQDVIETTLIKXADEQDC 70
Query: 262 DLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR 312
LI T+GGTG + RDVTPEA + D+ P + + E LK P A+LSR
Sbjct: 71 CLIVTTGGTGPAKRDVTPEATEAVCDRXXPGFGELXRAESLKFVPTAILSR 121
>pdb|2F7W|A Chain A, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|2F7W|B Chain B, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|2F7W|C Chain C, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|2F7Y|A Chain A, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|2F7Y|B Chain B, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
pdb|2F7Y|C Chain C, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein Mog From Shewanella Oneidensis
Length = 177
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 203 LALVSDRCFNKESEDKSGPLLAQLLQEDFQHA-HILKTCVPDEMEEIKDKLKYWVDQSKV 261
+ VSDR ED SG + L + + +PDE + I+ L D+
Sbjct: 8 IVTVSDRASAGIYEDISGKAIIDTLNDYLTSEWEPIYQVIPDEQDVIETTLIKXADEQDC 67
Query: 262 DLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR 312
LI T+GGTG + RDVTPEA + D+ P + + E LK P A+LSR
Sbjct: 68 CLIVTTGGTGPAKRDVTPEATEAVCDRXXPGFGELXRAESLKFVPTAILSR 118
>pdb|1DI6|A Chain A, 1.45 A Crystal Structure Of The Molybdenumm Cofactor
Biosynthesis Protein Moga From Escherichia Coli
pdb|1DI7|A Chain A, 1.60 Angstrom Crystal Structure Of The Molybdenum Cofactor
Biosynthesis Protein Moga From Escherichia Coli
Length = 195
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 9/130 (6%)
Query: 203 LALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKT-CVPDEMEEIKDKLKYWVDQSKV 261
L +SDR + +DK P L + L L+T +PDE I+ L VD+
Sbjct: 8 LVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSC 67
Query: 262 DLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSRFKGNCPKKW 321
L+ T+GGTG + RDVTP+A + D+++P ++ L P A+LSR
Sbjct: 68 HLVLTTGGTGPARRDVTPDATLAVADREMPGFGEQMRQISLHFVPTAILSR--------Q 119
Query: 322 VKLIRRQNVI 331
V +IR+Q +I
Sbjct: 120 VGVIRKQALI 129
>pdb|2G4R|A Chain A, Anomalous Substructure Of Moga
pdb|2G4R|B Chain B, Anomalous Substructure Of Moga
pdb|2G4R|C Chain C, Anomalous Substructure Of Moga
Length = 160
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 203 LALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEE---IKDKLKYWVDQS 259
+ +VS R D GP++A L++ H + P + + + + L V+ +
Sbjct: 8 IVVVSSRAAAGVYTDDCGPIIAGWLEQ-----HGFSSVQPQVVADGNPVGEALHDAVN-A 61
Query: 260 KVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSRFKGNCPK 319
VD+I TSGGTG+SP D TPE ++D +P + I+ GL P ++LSR G C
Sbjct: 62 GVDVIITSGGTGISPTDTTPEHTVAVLDYVIPGLADAIRRSGLPKVPTSVLSR--GVCGV 119
Query: 320 KWVKLI 325
LI
Sbjct: 120 AGRTLI 125
>pdb|1Y5E|A Chain A, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein B
pdb|1Y5E|B Chain B, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein B
pdb|1Y5E|C Chain C, Crystal Structure Of Molybdenum Cofactor Biosynthesis
Protein B
Length = 169
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 17/149 (11%)
Query: 200 CHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQS 259
C ++ + R E DKSG LL +LL+E H V D+ E I+ + +
Sbjct: 16 CKIVTISDTRT---EETDKSGQLLHELLKEA-GHKVTSYEIVKDDKESIQQAVLAGYHKE 71
Query: 260 KVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGL--KVTPLAMLSRFKGNC 317
VD++ T+GGTG++ RDVT EA++ L+DK++ + + + A LSR G
Sbjct: 72 DVDVVLTNGGTGITKRDVTIEAVSALLDKEIVGFGELFRXISYLEDIGSSAXLSRAIGGT 131
Query: 318 PKK-----------WVKLIRRQNVIPWLG 335
+ V+L + ++P LG
Sbjct: 132 IGRKVVFSXPGSSGAVRLAXNKLILPELG 160
>pdb|2G2C|A Chain A, Putative Molybdenum Cofactor Biosynthesis Protein From
Corynebacterium Diphtheriae
Length = 167
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 203 LALVSDRCFNKESEDKSGPLLAQLLQ---EDFQHAHILKTCVPDEMEEIKDKLKYWVDQS 259
+ +VSDR E+K+ PLL +L +D+ + I + VP+ + + + + + Q
Sbjct: 10 IIVVSDRISTGTRENKALPLLQRLXSDELQDYSYELISEVVVPEGYDTVVEAIATALKQG 69
Query: 260 KVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR 312
I T+GGTG+ ++ TPEA I + +E I G T LA LSR
Sbjct: 70 A-RFIITAGGTGIRAKNQTPEATASFIHTRCEGLEQQILIHGSTHTHLAGLSR 121
>pdb|3IWT|A Chain A, Structure Of Hypothetical Molybdenum Cofactor Biosynthesis
Protein B From Sulfolobus Tokodaii
pdb|3IWT|B Chain B, Structure Of Hypothetical Molybdenum Cofactor Biosynthesis
Protein B From Sulfolobus Tokodaii
pdb|3IWT|C Chain C, Structure Of Hypothetical Molybdenum Cofactor Biosynthesis
Protein B From Sulfolobus Tokodaii
Length = 178
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Query: 182 HAQRCSTSMKYWELVRSTCHLLALVSDRCFNKES-EDKSGPLLAQLLQEDFQHAHILKTC 240
H + S+ ++ + ST ++ KE D+SG ++ QLL E+ H I +
Sbjct: 8 HKENAPKSLNFYVITISTSRY-----EKLLKKEPIVDESGDIIKQLLIEN-GHKIIGYSL 61
Query: 241 VPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLIDKKV 290
VPD+ +I + +VD+I ++GGTG SP D+T E + L D+++
Sbjct: 62 VPDDKIKILKAFTDALSIDEVDVIISTGGTGYSPTDITVETIRKLFDREI 111
>pdb|3TCR|A Chain A, Crystal Structure Of A Molybdopterin Biosynthesis Protein
From Mycobacterium Abscessus
pdb|3TCR|B Chain B, Crystal Structure Of A Molybdopterin Biosynthesis Protein
From Mycobacterium Abscessus
Length = 199
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 189 SMKYWELVRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEI 248
SM E L+ +V+DR + + +D SGPL+ +LL E V +++ EI
Sbjct: 34 SMAELEAGPVGRSLVVIVNDRTAHGD-QDTSGPLVTELLAE-AGFVVDGVVVVENDLSEI 91
Query: 249 KDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLK 303
++ + V VDL+ T GGTG++PRDV PEA L+D+++ I I++ GL
Sbjct: 92 QNAVNTAV-IGGVDLVVTVGGTGVTPRDVAPEATQPLLDRELLGIAEAIRSSGLA 145
>pdb|1MKZ|A Chain A, Crystal Structure Of Moab Protein At 1.6 A Resolution.
pdb|1MKZ|B Chain B, Crystal Structure Of Moab Protein At 1.6 A Resolution
Length = 172
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 206 VSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIF 265
VS+R E +D SG L QE H + K V + I+ ++ W+ V ++
Sbjct: 18 VSNR--RGEEDDTSGHYLRDSAQEAGHHV-VDKAIVKENRYAIRAQVSAWIASDDVQVVL 74
Query: 266 TSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQ 298
+GGTG++ D PEA+ L D++V + +
Sbjct: 75 ITGGTGLTEGDQAPEALLPLFDREVEGFGEVFR 107
>pdb|1R2K|B Chain B, Crystal Structure Of Moab From Escherichia Coli
pdb|1R2K|A Chain A, Crystal Structure Of Moab From Escherichia Coli
Length = 169
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 206 VSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIF 265
VS+R E +D SG L QE H + K V + I+ ++ W+ V ++
Sbjct: 17 VSNR--RGEEDDTSGHYLRDSAQEAGHHV-VDKAIVKENRYAIRAQVSAWIASDDVQVVL 73
Query: 266 TSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQ 298
+GGTG++ D PEA+ L D++V + +
Sbjct: 74 ITGGTGLTEGDQAPEALLPLFDREVEGFGEVFR 106
>pdb|1T5J|A Chain A, Crystal Structure Of Ribosylglycohydrolase Mj1187 From
Methanococcus Jannaschii
Length = 313
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 228 QEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAM----- 282
++DF + D EE KL + + +D I+ GTG+ +V P A+
Sbjct: 179 RKDFSLLDECYNYIKDIDEEFAKKLLEIKNFNNLDYIYDYFGTGVKTDEVVPSAIATYLL 238
Query: 283 -NHLIDKKVPCIEHIIQTEGLKVTPLAMLSRFKG--NCPKKWVKLIRRQNVI 331
++ + + CI T+ L AM + G N PK+W+ ++ + VI
Sbjct: 239 TDNFKEGMLKCINAGGDTDSLASMYGAMAGAYYGFKNIPKEWIDGLKNKEVI 290
>pdb|3BBN|F Chain F, Homology Model For The Spinach Chloroplast 30s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 168
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 160 KPEWTEKSQQYSTTQVIRPDTNHAQRCSTSMKYWELVRSTCHLLALVSDR 209
+P+ +QY T V+RPD +R + + KY EL+ + + V +R
Sbjct: 55 EPQCPPGLRQYETMAVLRPDMTEDERLTLTQKYEELLVAGGAMYVEVFNR 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,549,426
Number of Sequences: 62578
Number of extensions: 439186
Number of successful extensions: 1077
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1046
Number of HSP's gapped (non-prelim): 30
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)