Query psy7342
Match_columns 338
No_of_seqs 226 out of 1849
Neff 5.8
Searched_HMMs 46136
Date Sat Aug 17 00:18:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7342.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7342hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0303 MoeA Molybdopterin bio 100.0 2.6E-52 5.5E-57 415.2 21.4 276 49-338 2-320 (404)
2 PRK14497 putative molybdopteri 100.0 5.1E-49 1.1E-53 403.3 23.7 275 49-337 6-321 (546)
3 PRK10680 molybdopterin biosynt 100.0 1.3E-48 2.8E-53 390.4 21.9 270 54-337 8-319 (411)
4 PRK14690 molybdopterin biosynt 100.0 5.4E-48 1.2E-52 386.6 23.0 271 53-337 22-335 (419)
5 PRK14491 putative bifunctional 100.0 6.2E-48 1.3E-52 400.9 23.9 303 21-337 161-509 (597)
6 cd00887 MoeA MoeA family. Memb 100.0 5.1E-48 1.1E-52 384.1 20.3 265 58-337 3-311 (394)
7 PLN02699 Bifunctional molybdop 100.0 3.1E-45 6.6E-50 384.0 23.0 273 51-337 5-334 (659)
8 PRK14498 putative molybdopteri 100.0 3.6E-45 7.8E-50 382.5 23.3 277 48-337 4-328 (633)
9 KOG2371|consensus 100.0 1.9E-37 4.2E-42 298.7 17.0 282 47-336 6-337 (411)
10 PRK09417 mogA molybdenum cofac 99.9 6.3E-27 1.4E-31 212.7 13.6 123 197-320 2-126 (193)
11 cd00886 MogA_MoaB MogA_MoaB fa 99.9 1.1E-26 2.4E-31 203.0 14.4 137 199-337 1-148 (152)
12 COG0521 MoaB Molybdopterin bio 99.9 1.2E-26 2.7E-31 205.8 13.6 139 196-336 5-155 (169)
13 TIGR02667 moaB_proteo molybden 99.9 1.4E-26 3.1E-31 205.1 12.6 138 196-336 2-151 (163)
14 PF00994 MoCF_biosynth: Probab 99.9 2.4E-26 5.2E-31 198.3 9.3 132 202-336 1-144 (144)
15 cd03522 MoeA_like MoeA_like. T 99.9 1.3E-24 2.8E-29 210.5 15.9 162 163-335 118-294 (312)
16 cd00758 MoCF_BD MoCF_BD: molyb 99.9 4.1E-24 8.9E-29 182.7 13.5 127 200-334 1-133 (133)
17 TIGR00177 molyb_syn molybdenum 99.9 1.3E-23 2.8E-28 182.1 13.3 131 199-332 1-144 (144)
18 PRK03604 moaC bifunctional mol 99.9 2.3E-23 4.9E-28 201.8 14.3 135 199-336 156-301 (312)
19 PRK01215 competence damage-ind 99.9 2.1E-21 4.5E-26 184.4 14.3 138 197-337 2-174 (264)
20 PF03453 MoeA_N: MoeA N-termin 99.8 1.3E-21 2.9E-26 173.1 7.4 131 54-189 2-162 (162)
21 cd00885 cinA Competence-damage 99.8 1.4E-20 3.1E-25 167.9 12.9 96 200-298 1-96 (170)
22 smart00852 MoCF_biosynth Proba 99.8 1.9E-20 4.2E-25 159.8 12.8 118 202-323 1-127 (135)
23 PLN02699 Bifunctional molybdop 99.8 7.2E-19 1.6E-23 185.3 14.5 138 197-335 457-609 (659)
24 TIGR00200 cinA_nterm competenc 99.8 1.3E-18 2.8E-23 174.7 14.1 136 199-337 1-172 (413)
25 PRK00549 competence damage-ind 99.7 1.5E-17 3.3E-22 167.0 14.3 135 199-336 1-170 (414)
26 PRK03673 hypothetical protein; 99.7 2.1E-17 4.6E-22 165.0 13.2 137 198-337 1-172 (396)
27 PRK03670 competence damage-ind 99.7 2.7E-17 6E-22 155.3 12.5 99 199-299 1-99 (252)
28 COG1058 CinA Predicted nucleot 99.7 2.7E-16 5.8E-21 148.4 11.5 98 199-299 2-99 (255)
29 COG2185 Sbm Methylmalonyl-CoA 86.9 1.7 3.7E-05 38.2 5.9 80 197-288 11-90 (143)
30 cd03129 GAT1_Peptidase_E_like 84.6 3.2 6.9E-05 37.8 6.8 63 197-271 28-91 (210)
31 TIGR02069 cyanophycinase cyano 83.3 2.9 6.2E-05 39.7 6.1 66 197-270 27-92 (250)
32 PF07697 7TMR-HDED: 7TM-HD ext 82.9 0.88 1.9E-05 41.1 2.4 29 162-191 191-220 (222)
33 cd01836 FeeA_FeeB_like SGNH_hy 80.6 5.4 0.00012 34.8 6.5 72 199-271 1-78 (191)
34 cd03146 GAT1_Peptidase_E Type 80.5 3.3 7.1E-05 38.0 5.3 60 196-269 29-89 (212)
35 PRK06131 dihydroxy-acid dehydr 79.9 4.9 0.00011 42.8 6.8 88 179-269 20-120 (571)
36 COG3340 PepE Peptidase E [Amin 79.2 6.6 0.00014 36.9 6.8 63 198-270 32-94 (224)
37 TIGR00689 rpiB_lacA_lacB sugar 78.4 5.6 0.00012 35.0 5.8 52 222-274 15-69 (144)
38 PF02502 LacAB_rpiB: Ribose/Ga 77.7 4.9 0.00011 35.1 5.2 53 221-274 15-70 (140)
39 KOG2644|consensus 77.5 0.44 9.5E-06 46.2 -1.5 84 201-287 7-90 (282)
40 TIGR02133 RPI_actino ribose 5- 77.2 6.5 0.00014 34.7 5.8 53 221-274 16-72 (148)
41 cd03145 GAT1_cyanophycinase Ty 77.0 6.1 0.00013 36.4 5.9 66 197-270 28-93 (217)
42 PRK12613 galactose-6-phosphate 76.4 7.8 0.00017 34.0 6.1 52 222-274 17-68 (141)
43 cd06353 PBP1_BmpA_Med_like Per 75.5 11 0.00023 35.5 7.3 45 221-268 21-65 (258)
44 COG0698 RpiB Ribose 5-phosphat 75.5 8.4 0.00018 34.2 6.1 53 221-274 16-72 (151)
45 PRK02261 methylaspartate mutas 74.9 8.6 0.00019 33.2 5.9 79 197-287 2-80 (137)
46 TIGR00640 acid_CoA_mut_C methy 74.6 9.6 0.00021 32.7 6.1 77 197-285 1-77 (132)
47 cd01822 Lysophospholipase_L1_l 74.2 14 0.0003 31.5 7.1 70 202-271 2-75 (177)
48 PRK13016 dihydroxy-acid dehydr 73.0 13 0.00028 39.6 7.8 96 172-269 16-124 (577)
49 PRK13017 dihydroxy-acid dehydr 72.6 13 0.00029 39.7 7.8 89 179-269 28-129 (596)
50 TIGR01120 rpiB ribose 5-phosph 72.6 11 0.00025 33.0 6.2 52 222-274 16-70 (143)
51 PF03575 Peptidase_S51: Peptid 71.5 7.6 0.00016 33.6 4.8 41 223-270 5-45 (154)
52 TIGR01119 lacB galactose-6-pho 71.3 11 0.00024 34.1 5.9 52 222-274 17-71 (171)
53 PRK08622 galactose-6-phosphate 71.1 11 0.00025 34.0 6.0 52 222-274 17-71 (171)
54 PRK05571 ribose-5-phosphate is 70.3 13 0.00029 32.8 6.1 52 222-274 17-72 (148)
55 TIGR00655 PurU formyltetrahydr 70.2 14 0.0003 35.9 6.7 75 197-272 83-172 (280)
56 PRK12615 galactose-6-phosphate 70.2 12 0.00026 33.9 5.9 52 222-274 17-71 (171)
57 PRK09273 hypothetical protein; 67.1 12 0.00026 35.0 5.4 52 222-274 21-77 (211)
58 PF04263 TPK_catalytic: Thiami 66.7 19 0.00041 30.6 6.1 66 216-286 44-109 (123)
59 TIGR02990 ectoine_eutA ectoine 66.1 28 0.0006 32.9 7.8 85 183-286 113-206 (239)
60 PRK05282 (alpha)-aspartyl dipe 66.0 15 0.00032 34.7 5.9 61 197-271 30-90 (233)
61 cd04501 SGNH_hydrolase_like_4 65.9 25 0.00054 30.4 7.0 68 203-271 3-70 (183)
62 PRK13010 purU formyltetrahydro 65.2 19 0.00041 35.1 6.6 76 197-273 92-182 (289)
63 TIGR00566 trpG_papA glutamine 64.9 23 0.0005 31.8 6.8 61 216-285 8-69 (188)
64 PRK08621 galactose-6-phosphate 63.5 22 0.00047 31.3 6.0 52 222-274 17-69 (142)
65 PRK13196 pyrrolidone-carboxyla 63.3 23 0.0005 32.9 6.6 80 202-282 3-82 (211)
66 PRK13193 pyrrolidone-carboxyla 62.0 30 0.00064 32.2 7.0 77 203-281 3-80 (209)
67 PF00117 GATase: Glutamine ami 61.7 11 0.00025 33.2 4.1 68 216-291 6-74 (192)
68 TIGR00888 guaA_Nterm GMP synth 61.6 29 0.00064 30.8 6.8 65 217-291 8-72 (188)
69 PRK13197 pyrrolidone-carboxyla 60.8 26 0.00056 32.6 6.4 79 203-282 4-82 (215)
70 COG2039 Pcp Pyrrolidone-carbox 60.7 38 0.00082 31.5 7.2 80 203-283 3-82 (207)
71 PRK15454 ethanol dehydrogenase 60.4 19 0.0004 36.4 5.8 52 221-274 67-120 (395)
72 TIGR01118 lacA galactose-6-pho 59.8 26 0.00055 30.8 5.8 52 222-274 17-69 (141)
73 PRK13011 formyltetrahydrofolat 59.5 28 0.00062 33.7 6.7 79 197-276 88-181 (286)
74 PRK06027 purU formyltetrahydro 59.3 27 0.00059 33.8 6.6 75 197-272 88-177 (286)
75 PRK12448 dihydroxy-acid dehydr 59.3 31 0.00067 37.1 7.4 89 178-269 15-120 (615)
76 cd01742 GATase1_GMP_Synthase T 58.8 21 0.00046 31.2 5.3 46 217-272 8-53 (181)
77 PF02608 Bmp: Basic membrane p 58.8 22 0.00047 34.3 5.8 68 199-269 2-70 (306)
78 cd00578 L-fuc_L-ara-isomerases 57.8 19 0.00041 36.8 5.4 71 199-271 1-77 (452)
79 PF04392 ABC_sub_bind: ABC tra 57.8 21 0.00046 33.9 5.5 65 200-270 1-69 (294)
80 PRK13194 pyrrolidone-carboxyla 57.0 35 0.00076 31.7 6.6 67 203-270 3-70 (208)
81 PRK00911 dihydroxy-acid dehydr 56.8 33 0.00073 36.5 7.1 89 178-269 13-118 (552)
82 cd08183 Fe-ADH2 Iron-containin 56.3 31 0.00068 34.3 6.6 53 220-274 36-89 (374)
83 cd02067 B12-binding B12 bindin 56.0 33 0.00073 27.9 5.7 51 213-269 9-59 (119)
84 PRK13195 pyrrolidone-carboxyla 55.7 31 0.00068 32.4 6.1 77 203-281 4-81 (222)
85 PF00670 AdoHcyase_NAD: S-aden 55.2 29 0.00062 31.2 5.5 59 219-286 34-101 (162)
86 PTZ00215 ribose 5-phosphate is 53.0 44 0.00096 29.6 6.3 58 217-274 10-75 (151)
87 PRK10528 multifunctional acyl- 52.8 35 0.00075 30.3 5.7 70 201-272 11-83 (191)
88 PF13507 GATase_5: CobB/CobQ-l 52.6 40 0.00086 32.3 6.4 65 198-279 1-65 (259)
89 PRK06895 putative anthranilate 52.5 36 0.00078 30.4 5.8 46 216-272 10-55 (190)
90 cd03522 MoeA_like MoeA_like. T 51.9 12 0.00026 36.8 2.8 29 168-197 19-47 (312)
91 PRK05670 anthranilate synthase 51.4 43 0.00094 29.8 6.1 60 217-285 9-69 (189)
92 TIGR00504 pyro_pdase pyrogluta 51.1 49 0.0011 30.7 6.5 77 203-281 2-78 (212)
93 PRK08007 para-aminobenzoate sy 50.2 51 0.0011 29.6 6.4 66 216-291 8-74 (187)
94 cd01838 Isoamyl_acetate_hydrol 49.9 41 0.00089 28.9 5.6 67 203-271 2-74 (199)
95 COG0129 IlvD Dihydroxyacid deh 49.2 55 0.0012 35.0 7.2 90 178-270 24-130 (575)
96 TIGR01196 edd 6-phosphoglucona 49.0 49 0.0011 35.6 6.9 77 192-269 58-152 (601)
97 cd01835 SGNH_hydrolase_like_3 48.9 62 0.0013 28.1 6.7 70 202-271 3-80 (193)
98 cd01834 SGNH_hydrolase_like_2 48.7 43 0.00094 28.6 5.5 66 202-270 3-71 (191)
99 cd00501 Peptidase_C15 Pyroglut 48.7 60 0.0013 29.2 6.7 68 203-271 3-71 (194)
100 cd01743 GATase1_Anthranilate_S 48.0 72 0.0016 28.1 7.0 66 217-291 8-73 (184)
101 COG0299 PurN Folate-dependent 47.5 1.1E+02 0.0023 28.6 8.0 67 216-288 35-103 (200)
102 PRK02301 putative deoxyhypusin 46.8 1.5E+02 0.0032 29.5 9.4 65 221-293 47-112 (316)
103 TIGR01501 MthylAspMutase methy 46.4 81 0.0018 27.3 6.8 66 213-285 11-76 (134)
104 PRK03359 putative electron tra 46.4 1.8E+02 0.0039 27.8 9.7 102 174-287 32-139 (256)
105 PF04028 DUF374: Domain of unk 46.0 65 0.0014 25.1 5.5 49 218-269 20-68 (74)
106 PF01470 Peptidase_C15: Pyrogl 45.8 31 0.00067 31.6 4.3 74 203-278 3-77 (202)
107 COG1899 DYS1 Deoxyhypusine syn 45.6 45 0.00097 33.1 5.5 63 221-292 45-108 (318)
108 CHL00101 trpG anthranilate syn 45.5 65 0.0014 28.8 6.3 67 216-291 8-74 (190)
109 PRK09860 putative alcohol dehy 45.3 60 0.0013 32.5 6.6 52 221-274 49-102 (383)
110 TIGR00639 PurN phosphoribosylg 45.3 73 0.0016 28.9 6.6 52 222-274 41-93 (190)
111 cd04245 AAK_AKiii-YclM-BS AAK_ 45.0 46 0.001 32.4 5.6 67 218-287 122-211 (288)
112 cd08170 GlyDH Glycerol dehydro 44.9 53 0.0012 32.2 6.1 54 219-274 37-91 (351)
113 PRK10780 periplasmic chaperone 44.9 35 0.00077 30.1 4.4 39 247-285 124-164 (165)
114 PF00731 AIRC: AIR carboxylase 44.9 61 0.0013 28.7 5.8 94 199-305 1-106 (150)
115 PRK07649 para-aminobenzoate/an 44.4 52 0.0011 29.8 5.5 60 216-284 8-68 (195)
116 cd02072 Glm_B12_BD B12 binding 44.1 32 0.00069 29.6 3.8 50 213-268 9-58 (128)
117 PRK06774 para-aminobenzoate sy 44.1 70 0.0015 28.5 6.3 60 216-284 8-68 (191)
118 PRK01372 ddl D-alanine--D-alan 43.7 99 0.0021 29.2 7.6 78 198-285 4-81 (304)
119 cd02070 corrinoid_protein_B12- 42.1 1.1E+02 0.0024 27.6 7.4 64 198-272 82-145 (201)
120 PRK00805 putative deoxyhypusin 41.6 63 0.0014 32.2 6.0 65 220-292 35-100 (329)
121 PRK12342 hypothetical protein; 41.2 2.5E+02 0.0054 26.9 9.8 102 173-287 30-136 (254)
122 PRK01175 phosphoribosylformylg 40.9 69 0.0015 30.7 6.0 60 198-275 3-63 (261)
123 cd06318 PBP1_ABC_sugar_binding 40.4 1.2E+02 0.0026 27.5 7.4 49 217-268 15-63 (282)
124 cd01745 GATase1_2 Subgroup of 40.2 53 0.0012 29.4 4.9 51 216-274 17-67 (189)
125 cd01830 XynE_like SGNH_hydrola 39.7 1.3E+02 0.0028 26.7 7.3 69 203-271 2-85 (204)
126 cd01844 SGNH_hydrolase_like_6 39.7 58 0.0013 28.1 5.0 66 203-271 2-68 (177)
127 cd01832 SGNH_hydrolase_like_1 39.6 81 0.0017 27.0 5.8 68 203-271 2-78 (185)
128 cd01841 NnaC_like NnaC (CMP-Ne 39.5 64 0.0014 27.5 5.2 60 203-271 3-62 (174)
129 cd01833 XynB_like SGNH_hydrola 39.1 30 0.00066 29.0 3.0 12 202-213 2-13 (157)
130 PRK11366 puuD gamma-glutamyl-g 39.0 1.2E+02 0.0026 28.7 7.3 67 197-272 6-74 (254)
131 cd01821 Rhamnogalacturan_acety 38.8 97 0.0021 27.1 6.3 67 203-271 3-76 (198)
132 COG2069 CdhD CO dehydrogenase/ 38.8 91 0.002 31.1 6.4 69 213-286 146-221 (403)
133 PRK07765 para-aminobenzoate sy 38.6 86 0.0019 28.8 6.1 68 217-291 10-78 (214)
134 PF00448 SRP54: SRP54-type pro 38.6 68 0.0015 29.1 5.3 73 197-277 28-101 (196)
135 PRK13566 anthranilate synthase 38.5 1.3E+02 0.0028 33.2 8.3 75 197-291 525-600 (720)
136 cd06371 PBP1_sensory_GC_DEF_li 38.5 1.7E+02 0.0036 28.9 8.5 66 199-270 133-198 (382)
137 COG0512 PabA Anthranilate/para 38.3 64 0.0014 29.8 5.1 62 215-285 9-71 (191)
138 PLN02335 anthranilate synthase 37.9 1.1E+02 0.0023 28.4 6.7 72 197-286 17-89 (222)
139 PRK09423 gldA glycerol dehydro 37.9 71 0.0015 31.7 5.8 54 219-274 44-98 (366)
140 PF13407 Peripla_BP_4: Peripla 37.7 1.2E+02 0.0027 27.1 7.0 65 217-287 14-78 (257)
141 TIGR00321 dhys deoxyhypusine s 37.5 86 0.0019 30.9 6.2 48 221-270 35-83 (301)
142 TIGR00110 ilvD dihydroxy-acid 37.5 89 0.0019 33.3 6.6 80 188-269 2-98 (535)
143 COG4126 Hydantoin racemase [Am 37.3 70 0.0015 30.3 5.2 76 198-287 109-197 (230)
144 cd01829 SGNH_hydrolase_peri2 S 36.9 64 0.0014 28.1 4.8 64 203-271 2-70 (200)
145 cd08182 HEPD Hydroxyethylphosp 36.9 1.2E+02 0.0025 30.1 7.1 52 221-274 38-91 (367)
146 PRK10624 L-1,2-propanediol oxi 36.8 66 0.0014 32.1 5.4 54 219-274 46-101 (382)
147 PRK09054 phosphogluconate dehy 36.8 62 0.0013 34.9 5.4 76 193-269 60-153 (603)
148 COG0205 PfkA 6-phosphofructoki 36.8 1.1E+02 0.0023 30.8 6.8 60 211-271 46-105 (347)
149 PRK02492 deoxyhypusine synthas 36.7 83 0.0018 31.6 6.0 49 221-271 48-97 (347)
150 TIGR02638 lactal_redase lactal 36.6 68 0.0015 32.0 5.5 53 220-274 46-100 (379)
151 COG4002 Predicted phosphotrans 36.4 1.2E+02 0.0026 28.7 6.6 111 139-271 87-202 (256)
152 cd05212 NAD_bind_m-THF_DH_Cycl 36.0 2.1E+02 0.0046 24.7 7.8 71 178-271 12-82 (140)
153 TIGR01815 TrpE-clade3 anthrani 36.0 1.5E+02 0.0033 32.6 8.3 75 197-291 515-590 (717)
154 TIGR03609 S_layer_CsaB polysac 35.0 70 0.0015 30.2 5.1 20 253-274 59-78 (298)
155 cd08181 PPD-like 1,3-propanedi 34.9 70 0.0015 31.6 5.2 52 221-274 44-97 (357)
156 PF06258 Mito_fiss_Elm1: Mitoc 34.2 4.6E+02 0.0099 25.7 10.9 131 130-274 84-221 (311)
157 PF00465 Fe-ADH: Iron-containi 34.2 97 0.0021 30.5 6.1 53 220-274 38-92 (366)
158 cd06346 PBP1_ABC_ligand_bindin 34.0 1.1E+02 0.0025 28.7 6.3 64 199-269 138-201 (312)
159 cd01747 GATase1_Glutamyl_Hydro 34.0 1.7E+02 0.0036 28.1 7.5 50 224-281 26-76 (273)
160 PF10686 DUF2493: Protein of u 33.9 51 0.0011 25.3 3.2 37 243-280 15-51 (71)
161 cd01828 sialate_O-acetylestera 33.7 67 0.0015 27.3 4.3 58 203-271 2-59 (169)
162 PRK05647 purN phosphoribosylgl 33.6 1.2E+02 0.0026 27.7 6.2 48 222-270 42-90 (200)
163 cd01825 SGNH_hydrolase_peri1 S 33.5 91 0.002 26.7 5.2 62 203-271 2-67 (189)
164 PF02310 B12-binding: B12 bind 33.5 74 0.0016 25.5 4.4 50 214-269 11-60 (121)
165 PRK00843 egsA NAD(P)-dependent 33.3 76 0.0017 31.3 5.2 54 217-274 47-101 (350)
166 cd01839 SGNH_arylesterase_like 33.1 88 0.0019 27.7 5.1 68 203-271 2-90 (208)
167 PRK14556 pyrH uridylate kinase 32.8 1.2E+02 0.0025 29.1 6.1 98 166-272 24-147 (249)
168 cd06354 PBP1_BmpA_PnrA_like Pe 32.5 1.5E+02 0.0032 27.3 6.7 65 200-268 1-65 (265)
169 cd06334 PBP1_ABC_ligand_bindin 32.2 1.6E+02 0.0034 28.7 7.1 66 198-270 140-205 (351)
170 PF10087 DUF2325: Uncharacteri 32.2 95 0.0021 24.7 4.7 60 217-280 9-69 (97)
171 PF06506 PrpR_N: Propionate ca 31.8 2.5E+02 0.0054 24.7 7.8 59 196-268 75-133 (176)
172 cd01078 NAD_bind_H4MPT_DH NADP 31.8 96 0.0021 27.5 5.1 13 261-273 98-110 (194)
173 cd08185 Fe-ADH1 Iron-containin 31.6 92 0.002 31.0 5.5 52 221-274 44-97 (380)
174 cd01741 GATase1_1 Subgroup of 31.3 1.2E+02 0.0026 26.6 5.7 44 220-273 13-59 (188)
175 PRK08857 para-aminobenzoate sy 31.2 1.8E+02 0.0038 26.1 6.8 60 216-284 8-68 (193)
176 COG0528 PyrH Uridylate kinase 31.2 64 0.0014 30.8 4.0 103 173-284 22-146 (238)
177 cd08194 Fe-ADH6 Iron-containin 31.1 1.1E+02 0.0024 30.4 5.9 52 221-274 41-94 (375)
178 cd06366 PBP1_GABAb_receptor Li 30.9 2.6E+02 0.0057 26.5 8.4 65 199-270 136-202 (350)
179 cd07766 DHQ_Fe-ADH Dehydroquin 30.8 1.6E+02 0.0035 28.4 7.0 53 219-274 38-92 (332)
180 cd08190 HOT Hydroxyacid-oxoaci 30.7 86 0.0019 31.8 5.1 53 220-274 40-94 (414)
181 cd02071 MM_CoA_mut_B12_BD meth 30.7 79 0.0017 26.2 4.1 53 212-270 8-60 (122)
182 cd01537 PBP1_Repressors_Sugar_ 30.6 2.5E+02 0.0055 24.5 7.7 51 218-271 16-66 (264)
183 COG0788 PurU Formyltetrahydrof 30.5 73 0.0016 31.1 4.3 75 197-272 89-178 (287)
184 PF13607 Succ_CoA_lig: Succiny 30.5 1.9E+02 0.004 25.0 6.5 91 202-300 30-135 (138)
185 cd01748 GATase1_IGP_Synthase T 30.4 1.1E+02 0.0023 27.4 5.2 37 218-269 9-45 (198)
186 cd02069 methionine_synthase_B1 30.3 1.2E+02 0.0025 28.1 5.5 65 197-272 87-151 (213)
187 PF11871 DUF3391: Domain of un 30.1 57 0.0012 26.9 3.2 47 150-197 8-56 (128)
188 TIGR01737 FGAM_synth_I phospho 30.1 1.7E+02 0.0037 27.0 6.7 53 199-274 1-54 (227)
189 cd06298 PBP1_CcpA_like Ligand- 29.6 2.6E+02 0.0057 24.9 7.7 47 220-269 18-64 (268)
190 KOG2598|consensus 29.6 2.5E+02 0.0054 29.5 8.1 79 220-301 81-168 (523)
191 cd08550 GlyDH-like Glycerol_de 29.5 1.5E+02 0.0033 29.1 6.5 54 219-274 37-91 (349)
192 cd06328 PBP1_SBP_like_2 Peripl 29.5 1.7E+02 0.0037 27.9 6.8 63 199-268 137-199 (333)
193 PF03446 NAD_binding_2: NAD bi 29.5 76 0.0016 27.5 4.0 69 199-284 2-77 (163)
194 PRK09065 glutamine amidotransf 29.5 1.3E+02 0.0029 28.0 5.9 64 199-272 2-66 (237)
195 cd08189 Fe-ADH5 Iron-containin 29.4 1E+02 0.0022 30.7 5.3 52 221-274 44-97 (374)
196 cd08178 AAD_C C-terminal alcoh 29.4 86 0.0019 31.5 4.9 54 219-274 37-92 (398)
197 cd01542 PBP1_TreR_like Ligand- 29.1 2.7E+02 0.0058 24.8 7.7 47 220-269 18-64 (259)
198 cd08549 G1PDH_related Glycerol 29.0 1.1E+02 0.0023 30.0 5.4 55 217-274 37-94 (332)
199 cd08179 NADPH_BDH NADPH-depend 28.6 1.1E+02 0.0023 30.5 5.3 52 221-274 42-95 (375)
200 cd06292 PBP1_LacI_like_10 Liga 28.5 2.9E+02 0.0063 24.8 7.9 47 219-268 17-63 (273)
201 PF03938 OmpH: Outer membrane 28.4 51 0.0011 28.3 2.7 39 247-285 117-157 (158)
202 PRK13146 hisH imidazole glycer 28.4 1.5E+02 0.0033 27.0 6.0 49 199-269 2-50 (209)
203 COG1744 Med Uncharacterized AB 28.0 2.8E+02 0.006 27.6 8.1 97 183-285 17-119 (345)
204 cd08186 Fe-ADH8 Iron-containin 27.8 1.1E+02 0.0024 30.6 5.3 52 221-274 45-98 (383)
205 cd08184 Fe-ADH3 Iron-containin 27.7 1.5E+02 0.0032 29.5 6.1 51 222-273 40-94 (347)
206 cd01746 GATase1_CTP_Synthase T 27.7 91 0.002 29.3 4.4 80 206-290 6-85 (235)
207 cd01827 sialate_O-acetylestera 27.7 1.2E+02 0.0026 26.1 4.9 68 201-271 1-78 (188)
208 cd08187 BDH Butanol dehydrogen 27.6 1.2E+02 0.0026 30.2 5.5 52 221-274 47-100 (382)
209 cd08176 LPO Lactadehyde:propan 27.3 1.1E+02 0.0024 30.4 5.2 53 219-273 44-98 (377)
210 cd06338 PBP1_ABC_ligand_bindin 27.2 2.1E+02 0.0046 27.0 6.9 65 198-269 141-205 (345)
211 cd01538 PBP1_ABC_xylose_bindin 27.0 2.8E+02 0.006 25.6 7.6 50 217-269 15-64 (288)
212 cd06349 PBP1_ABC_ligand_bindin 27.0 1.7E+02 0.0038 27.6 6.3 64 199-269 136-199 (340)
213 cd06310 PBP1_ABC_sugar_binding 27.0 2.2E+02 0.0047 25.6 6.8 47 220-268 18-65 (273)
214 PF09198 T4-Gluco-transf: Bact 26.9 80 0.0017 21.3 2.7 36 199-235 1-37 (38)
215 cd02065 B12-binding_like B12 b 26.9 1.6E+02 0.0035 23.5 5.3 52 213-270 9-60 (125)
216 PRK05337 beta-hexosaminidase; 26.6 1.2E+02 0.0025 30.2 5.1 60 217-285 226-293 (337)
217 KOG0025|consensus 26.5 1.3E+02 0.0029 30.0 5.3 107 152-267 99-216 (354)
218 PLN02834 3-dehydroquinate synt 26.4 1.7E+02 0.0036 30.1 6.4 56 217-274 113-177 (433)
219 PRK05637 anthranilate synthase 26.3 1.6E+02 0.0034 27.0 5.7 48 216-273 10-57 (208)
220 cd06331 PBP1_AmiC_like Type I 26.0 1.9E+02 0.0042 27.3 6.4 63 199-268 133-195 (333)
221 PRK11914 diacylglycerol kinase 25.9 2.2E+02 0.0048 27.2 6.9 47 222-272 30-76 (306)
222 TIGR02706 P_butyryltrans phosp 25.7 1.6E+02 0.0035 28.5 5.9 60 221-285 48-109 (294)
223 cd08551 Fe-ADH iron-containing 25.6 1.8E+02 0.004 28.6 6.4 54 219-274 39-94 (370)
224 cd08171 GlyDH-like2 Glycerol d 25.6 1.9E+02 0.0042 28.3 6.5 53 220-274 38-92 (345)
225 PRK05723 flavodoxin; Provision 25.4 65 0.0014 28.1 2.8 60 196-257 82-143 (151)
226 PRK10355 xylF D-xylose transpo 25.3 2.6E+02 0.0056 26.9 7.3 67 197-269 24-90 (330)
227 cd07025 Peptidase_S66 LD-Carbo 25.3 1.9E+02 0.0042 27.6 6.3 73 201-279 1-80 (282)
228 cd06316 PBP1_ABC_sugar_binding 25.3 2.6E+02 0.0057 25.7 7.1 44 223-268 21-64 (294)
229 KOG2371|consensus 25.2 48 0.001 33.6 2.1 42 229-272 6-47 (411)
230 PF06897 DUF1269: Protein of u 25.2 75 0.0016 26.2 3.0 39 215-254 63-101 (102)
231 cd06358 PBP1_NHase Type I peri 25.1 2.2E+02 0.0048 27.0 6.7 65 199-270 133-197 (333)
232 PRK13057 putative lipid kinase 24.9 2.1E+02 0.0045 27.1 6.4 58 219-286 14-71 (287)
233 cd01744 GATase1_CPSase Small c 24.8 2.3E+02 0.0049 24.9 6.2 61 221-291 10-71 (178)
234 cd03334 Fab1_TCP TCP-1 like do 24.8 2.2E+02 0.0047 27.0 6.5 67 196-284 84-150 (261)
235 PRK13846 putative glycerol-3-p 24.7 98 0.0021 30.7 4.1 84 168-268 141-230 (316)
236 COG1731 Archaeal riboflavin sy 24.6 3.2E+02 0.007 24.1 6.8 65 217-285 15-81 (154)
237 cd06305 PBP1_methylthioribose_ 24.6 1.9E+02 0.0041 26.0 5.8 47 221-270 19-65 (273)
238 cd04506 SGNH_hydrolase_YpmR_li 24.6 1.1E+02 0.0024 26.8 4.2 68 203-270 2-78 (204)
239 PRK05665 amidotransferase; Pro 24.5 1.4E+02 0.003 28.1 5.0 62 199-271 3-68 (240)
240 PLN02347 GMP synthetase 24.3 2.6E+02 0.0055 29.7 7.4 53 199-272 11-65 (536)
241 COG2121 Uncharacterized protei 24.2 1.8E+02 0.0039 27.4 5.5 51 217-270 77-127 (214)
242 cd02064 FAD_synthetase_N FAD s 24.2 2.7E+02 0.0058 24.7 6.6 58 183-241 63-139 (180)
243 PRK13527 glutamine amidotransf 24.1 2E+02 0.0044 25.8 5.9 54 200-272 2-55 (200)
244 cd08173 Gro1PDH Sn-glycerol-1- 24.1 1.8E+02 0.0039 28.4 5.9 52 219-274 40-92 (339)
245 TIGR03446 mycothiol_Mca mycoth 24.0 1.5E+02 0.0033 28.7 5.3 41 244-284 105-148 (283)
246 COG0518 GuaA GMP synthase - Gl 24.0 1.3E+02 0.0028 27.6 4.6 75 199-291 2-78 (198)
247 COG1992 Uncharacterized conser 23.9 1.4E+02 0.0031 27.3 4.7 53 221-274 99-157 (181)
248 PRK03971 putative deoxyhypusin 23.9 64 0.0014 32.2 2.7 26 245-270 79-104 (334)
249 cd06312 PBP1_ABC_sugar_binding 23.8 3.1E+02 0.0067 24.8 7.2 47 220-269 19-66 (271)
250 cd06301 PBP1_rhizopine_binding 23.7 3.1E+02 0.0068 24.6 7.1 45 224-270 22-66 (272)
251 COG1454 EutG Alcohol dehydroge 23.5 1.4E+02 0.0031 30.3 5.2 52 221-274 47-100 (377)
252 COG1419 FlhF Flagellar GTP-bin 23.3 83 0.0018 32.3 3.5 67 196-277 231-297 (407)
253 PF05582 Peptidase_U57: YabG p 23.2 2.8E+02 0.0061 27.2 6.9 63 212-277 105-173 (287)
254 cd08193 HVD 5-hydroxyvalerate 23.1 1.8E+02 0.004 28.8 5.9 53 220-274 43-97 (376)
255 PRK01221 putative deoxyhypusin 23.1 81 0.0018 31.2 3.3 60 221-289 45-105 (312)
256 PRK14571 D-alanyl-alanine synt 23.0 3.2E+02 0.0068 25.9 7.3 84 200-293 2-85 (299)
257 PRK03619 phosphoribosylformylg 22.9 2.9E+02 0.0062 25.4 6.7 53 199-274 1-55 (219)
258 cd08191 HHD 6-hydroxyhexanoate 22.9 1.6E+02 0.0036 29.3 5.5 54 219-274 38-93 (386)
259 PF00763 THF_DHG_CYH: Tetrahyd 22.8 4.1E+02 0.0088 22.0 7.0 63 197-266 28-93 (117)
260 cd08192 Fe-ADH7 Iron-containin 22.7 1.8E+02 0.004 28.7 5.8 53 220-274 41-95 (370)
261 cd06300 PBP1_ABC_sugar_binding 22.7 3.7E+02 0.0079 24.2 7.4 47 221-269 19-69 (272)
262 cd04234 AAK_AK AAK_AK: Amino A 22.6 1.5E+02 0.0033 27.3 4.8 67 218-286 60-149 (227)
263 cd08175 G1PDH Glycerol-1-phosp 22.5 2.1E+02 0.0047 27.9 6.2 55 217-274 36-94 (348)
264 TIGR01319 glmL_fam conserved h 22.5 2.3E+02 0.0049 29.7 6.4 67 212-284 78-144 (463)
265 cd06268 PBP1_ABC_transporter_L 22.4 2.8E+02 0.006 24.7 6.5 64 199-269 136-199 (298)
266 cd01820 PAF_acetylesterase_lik 22.3 1.6E+02 0.0035 26.3 4.9 67 201-271 33-100 (214)
267 cd06345 PBP1_ABC_ligand_bindin 22.1 2.6E+02 0.0057 26.5 6.6 65 198-269 144-208 (344)
268 cd08188 Fe-ADH4 Iron-containin 22.0 1.6E+02 0.0036 29.2 5.3 53 220-274 45-99 (377)
269 PF09002 DUF1887: Domain of un 21.8 1.8E+02 0.0038 29.3 5.5 68 197-272 26-97 (381)
270 cd06363 PBP1_Taste_receptor Li 21.8 3.1E+02 0.0068 27.1 7.2 67 197-270 175-244 (410)
271 PF02601 Exonuc_VII_L: Exonucl 21.8 4.2E+02 0.0092 25.5 8.0 71 197-274 13-90 (319)
272 PF04577 DUF563: Protein of un 21.6 3.9E+02 0.0084 23.2 7.1 82 184-280 91-172 (206)
273 COG1090 Predicted nucleoside-d 21.6 3.4E+02 0.0075 26.8 7.1 99 220-320 11-117 (297)
274 PRK14558 pyrH uridylate kinase 21.6 3E+02 0.0066 25.3 6.6 65 219-286 76-145 (231)
275 PF13433 Peripla_BP_5: Peripla 21.5 2.2E+02 0.0049 28.8 6.1 48 219-268 150-197 (363)
276 PRK05297 phosphoribosylformylg 21.3 5.2E+02 0.011 30.6 9.7 111 197-335 1034-1148(1290)
277 COG1663 LpxK Tetraacyldisaccha 21.2 4.4E+02 0.0096 26.5 8.0 52 220-278 245-296 (336)
278 PRK00074 guaA GMP synthase; Re 21.2 3.5E+02 0.0076 28.4 7.7 54 199-271 4-57 (511)
279 COG0416 PlsX Fatty acid/phosph 21.2 1.1E+02 0.0024 30.6 3.8 89 167-271 140-233 (338)
280 KOG3349|consensus 21.2 1.5E+02 0.0033 26.8 4.2 71 199-272 3-92 (170)
281 COG2086 FixA Electron transfer 21.1 6.9E+02 0.015 24.1 9.1 101 174-286 33-137 (260)
282 TIGR02586 cas_devS CRISPR-asso 21.0 74 0.0016 29.2 2.3 64 218-284 87-151 (188)
283 cd08172 GlyDH-like1 Glycerol d 20.9 2E+02 0.0044 28.2 5.6 52 220-274 39-90 (347)
284 KOG4435|consensus 20.8 1.9E+02 0.0041 30.1 5.3 84 185-273 46-129 (535)
285 PRK13143 hisH imidazole glycer 20.6 3.6E+02 0.0078 24.2 6.8 47 200-270 2-48 (200)
286 cd06361 PBP1_GPC6A_like Ligand 20.6 2.9E+02 0.0064 27.5 6.8 65 199-269 173-243 (403)
287 cd06379 PBP1_iGluR_NMDA_NR1 N- 20.6 4.2E+02 0.0091 25.7 7.8 66 197-269 153-222 (377)
288 cd06308 PBP1_sensor_kinase_lik 20.5 3.8E+02 0.0083 24.1 7.1 46 221-269 19-65 (270)
289 TIGR01754 flav_RNR ribonucleot 20.5 2.1E+02 0.0046 24.0 5.0 64 183-254 72-138 (140)
290 cd06342 PBP1_ABC_LIVBP_like Ty 20.4 2.9E+02 0.0063 25.7 6.4 63 199-268 136-198 (334)
291 PF00456 Transketolase_N: Tran 20.4 2.6E+02 0.0055 27.8 6.2 61 212-274 187-250 (332)
292 cd06313 PBP1_ABC_sugar_binding 20.3 3.3E+02 0.0072 24.8 6.6 46 220-268 18-63 (272)
293 cd04244 AAK_AK-LysC-like AAK_A 20.1 3.5E+02 0.0076 26.3 7.0 67 218-287 128-221 (298)
294 TIGR01857 FGAM-synthase phosph 20.1 1.9E+02 0.0041 34.0 5.7 66 197-275 976-1046(1239)
No 1
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=100.00 E-value=2.6e-52 Score=415.23 Aligned_cols=276 Identities=18% Similarity=0.169 Sum_probs=250.3
Q ss_pred CcccchhhhHHHHHhhhhhcccCCCCCCCCCCccccchhhhhhhhcCCCCC--CCccc------ccccCCc--ceeEeee
Q psy7342 49 NFTQNAACIDERKELDNKCEIAHAPNKIMPNTSEKADTEKLNEKLNEGIND--HDRHT------KSIDFNG--INTSLGK 118 (338)
Q Consensus 49 ~f~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ad~~~l~~~l~~~~~~--~~~~~------~s~d~~g--~~~vig~ 118 (338)
.|+...+++|+++.+.+...+ .. .++.+.+..+.||.||+++.++.+. |++++ |+.|+++ ..+++|+
T Consensus 2 ~~~~l~~veeA~~~l~~~~~~-~~--~~e~v~l~~a~GrvLAedi~A~~d~P~fd~samDGyAvr~~D~~~~~~l~V~g~ 78 (404)
T COG0303 2 EFKGLLPVEEALEILLAHASP-LG--ETETVPLEEALGRVLAEDVVAPLDVPPFDRSAMDGYAVRAEDTDGAATLRVVGE 78 (404)
T ss_pred CcccCCCHHHHHHHHHhcccC-CC--CceEEEHHHcCCCeeehhhccCCCCCCCcccccceeEEchhccCCceeEEEEEE
Confidence 588899999999999998877 22 3789999999999999999999884 77774 9999998 6899999
Q ss_pred ccCCC---CCCCCCcEEEe-eCCCCCCCCcEEE-------------EcCCCCCCCCccccc--ccCCCcccCCCceeChh
Q psy7342 119 SGSSY---GSDGCTSAFEV-GGEPWPKKKKFVV-------------KHSVLPPHINLAKPE--WTEKSQQYSTTQVIRPD 179 (338)
Q Consensus 119 ~~~~~---~~~~~g~av~I-TGa~lP~gaDaVV-------------i~~~~~~g~nVr~~G--i~~Ge~ll~~G~~l~p~ 179 (338)
..+|+ ....+|+|+|| ||||||+|||||| |..++.+|+|||++| +++|++|+++|++|+|.
T Consensus 79 i~aG~~~~~~v~~geavrI~TGA~lP~gaDaVV~~E~~~~~~~~v~i~~~~~~g~nv~~~Gedi~~G~vil~~G~~L~p~ 158 (404)
T COG0303 79 IAAGEVPDLEVGPGEAVRIMTGAPLPEGADAVVMVEDTREEGDDVRILRAVKPGQNVRRAGEDVAKGDVILRAGTRLTPA 158 (404)
T ss_pred ecCCCCCCcccCCCeEEEEeCCCCCCCCCCEEEEEEEEEecCCcEEEeccCCCCcccccccccccCCCEeecCCCCcCHH
Confidence 99984 35678999999 9999999999999 678899999999999 99999999999999999
Q ss_pred cHHHHHhhCCCceeEeecCceEEEEecCCCcc-------CCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHH
Q psy7342 180 TNHAQRCSTSMKYWELVRSTCHLLALVSDRCF-------NKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKL 252 (338)
Q Consensus 180 ~i~~lLas~Gi~~v~V~~~prVaIIstGdEl~-------~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL 252 (338)
++ ++|||.|+.+|+||++|||+||+|||||. +|||+|+|+++|.++|++ +|+++..+++++||+++++++|
T Consensus 159 ~i-~llas~Gi~~V~V~rkprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~-~G~e~~~~giv~Dd~~~l~~~i 236 (404)
T COG0303 159 EI-ALLASLGIAEVKVYRKPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLER-AGGEVVDLGIVPDDPEALREAI 236 (404)
T ss_pred HH-HHHHhCCCceEEEecCCEEEEEecCccccCCCCCCCCCeEEecCHHHHHHHHHH-cCCceeeccccCCCHHHHHHHH
Confidence 99 99999999999999999999999999997 589999999999999999 9999999999999999999999
Q ss_pred HHHHhCCCCcEEEEeCCccCCCCCChHHHHH-hccccccCChHHHHHHhcCCCC-Cc--ccccee-EEEecCchHH--HH
Q psy7342 253 KYWVDQSKVDLIFTSGGTGMSPRDVTPEAMN-HLIDKKVPCIEHIIQTEGLKVT-PL--AMLSRF-KGNCPKKWVK--LI 325 (338)
Q Consensus 253 ~~a~~~~~~DlVITTGGts~G~~D~t~eal~-~l~~~~lpG~~e~~~~~s~~~~-p~--A~lsR~-vaGi~g~~v~--~a 325 (338)
++++++ ||+||||||+|+|++|+++++++ ++++..+||+. ++++ |. +.+... ++|+|||+++ ++
T Consensus 237 ~~a~~~--~DviItsGG~SvG~~D~v~~~l~~~lG~v~~~gia-------~kPGkP~~~g~~~~~~v~gLPGnPvSalv~ 307 (404)
T COG0303 237 EKALSE--ADVIITSGGVSVGDADYVKAALERELGEVLFHGVA-------MKPGKPTGLGRLGGKPVFGLPGNPVSALVN 307 (404)
T ss_pred HHhhhc--CCEEEEeCCccCcchHhHHHHHHhcCCcEEEEeee-------ecCCCceEEEEECCcEEEECCCCHHHHHHH
Confidence 999987 89999999999999999999999 59988888866 6775 33 334455 9999999885 78
Q ss_pred HHHhhhccccccC
Q psy7342 326 RRQNVIPWLGLWS 338 (338)
Q Consensus 326 ~~~~IlP~l~~~~ 338 (338)
|+.++.|.|..|+
T Consensus 308 f~~~v~p~l~~~~ 320 (404)
T COG0303 308 FELFVRPLLRKLL 320 (404)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998774
No 2
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=100.00 E-value=5.1e-49 Score=403.34 Aligned_cols=275 Identities=17% Similarity=0.091 Sum_probs=243.9
Q ss_pred CcccchhhhHHHHHhhhhhcccCCCCCCCCCCccccchhhhhhhhcCCCCC--CCccc------ccccCCcceeEeeecc
Q psy7342 49 NFTQNAACIDERKELDNKCEIAHAPNKIMPNTSEKADTEKLNEKLNEGIND--HDRHT------KSIDFNGINTSLGKSG 120 (338)
Q Consensus 49 ~f~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ad~~~l~~~l~~~~~~--~~~~~------~s~d~~g~~~vig~~~ 120 (338)
.|.+..+++||++.+.+...+ ...++.+++.+|.||+||+++.+..+. |++++ ++.|+.+..+++|+..
T Consensus 6 ~~~~l~s~eEAl~~ll~~~~~---~~~~E~V~l~eAlGRVLAedI~A~~d~P~f~~SAMDGYAVrs~dtp~~L~v~g~i~ 82 (546)
T PRK14497 6 GDESLYSIDEAIKVFLSSLNF---KPKIVKVEVKDSFGYVSAEDLMSPIDYPPFSRSTVDGYALKSSCTPGEFKVIDKIG 82 (546)
T ss_pred CcCCCCCHHHHHHHHHhcCCC---CCCeEEEEHHHhCCCcccceEEcCCCCCCCCCccccEEEEEecccCCceEEeeEEc
Confidence 466777888998888775554 113688899999999999999998884 77774 8889888889999988
Q ss_pred CCCC---CCCCCcEEEe-eCCCCCCCCcEEE--------------EcCCCCCCCCccccc--ccCCCcccCCCceeChhc
Q psy7342 121 SSYG---SDGCTSAFEV-GGEPWPKKKKFVV--------------KHSVLPPHINLAKPE--WTEKSQQYSTTQVIRPDT 180 (338)
Q Consensus 121 ~~~~---~~~~g~av~I-TGa~lP~gaDaVV--------------i~~~~~~g~nVr~~G--i~~Ge~ll~~G~~l~p~~ 180 (338)
+|.. ...+|+|++| ||++||+|||||| |.+++.||+|||++| +++||+|+++|++|+|.+
T Consensus 83 AG~~~~~~l~~GeAv~I~TGaplP~GaDAVV~vE~t~~~~~~~I~I~~~v~pg~nIr~~GeDi~~Gelll~~G~~L~p~~ 162 (546)
T PRK14497 83 IGEFKEIHIKECEAVEVDTGSMIPMGADAVIKVENTKVINGNFIKIDKKINFGQNIGWIGSDIPKGSIILRKGEVISHEK 162 (546)
T ss_pred CCCCCCcccCCCceEEeccCCCCCCCCCEEEEhhheEecCCCEEEECCCCCCCCCccccccccCCCCEEECCCCCCCHHH
Confidence 8753 4567999999 9999999999999 556789999999999 999999999999999999
Q ss_pred HHHHHhhCCCceeEeecCceEEEEecCCCcc-------CCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHH
Q psy7342 181 NHAQRCSTSMKYWELVRSTCHLLALVSDRCF-------NKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLK 253 (338)
Q Consensus 181 i~~lLas~Gi~~v~V~~~prVaIIstGdEl~-------~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~ 253 (338)
| ++|+++|+.+|+||++|||+||+|||||+ +|+++|+|+++|+++|++ +|+++..+++++||++.|+++|+
T Consensus 163 I-glLas~Gi~~V~V~~rprV~IisTGdELv~pg~~l~~G~I~dsNs~~L~a~l~~-~G~~v~~~~iv~Dd~e~i~~~l~ 240 (546)
T PRK14497 163 I-GLLASLGISSVKVYEKPKIYLIATGDELVEPGNSLSPGKIYESNLHYLYSKLKS-EGYKIVGLSLLSDDKESIKNEIK 240 (546)
T ss_pred H-HHHHhCCCCEEeeccCCEEEEEEcCCcccCCCCCCCCCcEEEhHHHHHHHHHHH-CCCEEEEEEEeCCCHHHHHHHHH
Confidence 9 99999999999999999999999999997 599999999999999999 99999999999999999999999
Q ss_pred HHHhCCCCcEEEEeCCccCCCCCChHHHHHhccccccCChHHHHHHhcCCCCCcccc----ceeEEEecCchHH--HHHH
Q psy7342 254 YWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAML----SRFKGNCPKKWVK--LIRR 327 (338)
Q Consensus 254 ~a~~~~~~DlVITTGGts~G~~D~t~eal~~l~~~~lpG~~e~~~~~s~~~~p~A~l----sR~vaGi~g~~v~--~a~~ 327 (338)
+++++ +|+||||||+|+|++|+++++++++++..+||+. +++++..++ .++++|+|||++. ++|+
T Consensus 241 ~al~~--~DlVIttGGtS~G~~D~~~~al~~lG~v~f~GV~-------ikPGKP~~~g~~~gkpV~gLPG~P~Sa~v~f~ 311 (546)
T PRK14497 241 RAISV--ADVLILTGGTSAGEKDFVHQAIRELGNIIVHGLK-------IKPGKPTILGIVDGKPVIGLPGNIVSTMVVLN 311 (546)
T ss_pred Hhhhc--CCEEEEcCCccCCCCccHHHHHhhcCcEEEccee-------ecCCCcEEEEEECCEEEEEcCCCHHHHHHHHH
Confidence 99876 8999999999999999999999999988888875 666533222 5899999999886 5788
Q ss_pred Hhhhcccccc
Q psy7342 328 QNVIPWLGLW 337 (338)
Q Consensus 328 ~~IlP~l~~~ 337 (338)
.++.|.|+.|
T Consensus 312 ~fV~P~L~~l 321 (546)
T PRK14497 312 MVILEYLKSL 321 (546)
T ss_pred HHHHHHHHHh
Confidence 9999999776
No 3
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=100.00 E-value=1.3e-48 Score=390.39 Aligned_cols=270 Identities=14% Similarity=0.094 Sum_probs=230.3
Q ss_pred hhhhHHHHHhhhhhcccCCCCCCCCCCccccchhhhhhhhcCCCCC--CCccc------ccccCCc--ceeEeeeccCCC
Q psy7342 54 AACIDERKELDNKCEIAHAPNKIMPNTSEKADTEKLNEKLNEGIND--HDRHT------KSIDFNG--INTSLGKSGSSY 123 (338)
Q Consensus 54 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ad~~~l~~~l~~~~~~--~~~~~------~s~d~~g--~~~vig~~~~~~ 123 (338)
.++.||++.+.+.+.+ ...++.+++.+|.||+||+++.++.+. ||+.+ ++.|+.+ ...++|+..+|.
T Consensus 8 is~~eAl~~i~~~~~~---~~~~e~v~l~~a~grvlAedv~A~~~~P~f~~SamDGyAv~~~d~~~~~~l~v~g~i~aG~ 84 (411)
T PRK10680 8 MSLETALTEMLSRVTP---LTATETLPLVQCFGRITASDIVSPLDVPGFDNSAMDGYAVRLADLASGQPLPVAGKAFAGQ 84 (411)
T ss_pred ccHHHHHHHHHhhCCC---CCCcEEEEHHHhCCChhheeeecCCCCCCCcccccccEEEeehhcCCCceeeEEEEEcCCC
Confidence 4566777777665554 112577888888999999998888773 66663 6777643 467888888875
Q ss_pred C---CCCCCcEEEe-eCCCCCCCCcEEE-------------EcCCCCCCCCccccc--ccCCCcccCCCceeChhcHHHH
Q psy7342 124 G---SDGCTSAFEV-GGEPWPKKKKFVV-------------KHSVLPPHINLAKPE--WTEKSQQYSTTQVIRPDTNHAQ 184 (338)
Q Consensus 124 ~---~~~~g~av~I-TGa~lP~gaDaVV-------------i~~~~~~g~nVr~~G--i~~Ge~ll~~G~~l~p~~i~~l 184 (338)
. +..+|+|++| ||++||+|||||| |..++++|+|||++| +++||+|+++|++|+|.+| ++
T Consensus 85 ~~~~~~~~g~av~I~TGa~vP~gaDaVv~~E~~~~~~~~i~i~~~~~~g~nIr~~Ged~~~G~~ll~~G~~l~p~~i-~l 163 (411)
T PRK10680 85 PFHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQTDDGVRFTAEVRSGQNIRRRGEDISQGAVVFPAGTRLTTAEL-PV 163 (411)
T ss_pred CCCcccCCCeEEEEecCCcCCCCCCEEEEEEEEEEcCCEEEECCCCCCCCCccccccccCCCCEEECCcCCCCHHHH-HH
Confidence 3 4578999999 9999999999999 567789999999999 9999999999999999999 99
Q ss_pred HhhCCCceeEeecCceEEEEecCCCcc-------CCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHh
Q psy7342 185 RCSTSMKYWELVRSTCHLLALVSDRCF-------NKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVD 257 (338)
Q Consensus 185 Las~Gi~~v~V~~~prVaIIstGdEl~-------~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~ 257 (338)
|+++|+.+|+||++|||+||+||||+. +|+++|+|+++|.++|++ +|+++..+.+++||+++|+++|+++.+
T Consensus 164 Las~G~~~V~V~~~prV~iistGdEl~~~~~~~~~g~i~dsn~~~l~a~l~~-~G~~~~~~~~v~Dd~~~i~~~l~~a~~ 242 (411)
T PRK10680 164 LASLGIAEVPVVRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQ-LGCEVINLGIIRDDPHALRAAFIEADS 242 (411)
T ss_pred HHhCCCCeEEecCCCEEEEEccCCeEeCCCCCCCCCEEEEhHHHHHHHHHHH-CCCEEEEEEEeCCCHHHHHHHHHHhcc
Confidence 999999999999999999999999996 699999999999999999 999999999999999999999999865
Q ss_pred CCCCcEEEEeCCccCCCCCChHHHHHhccccccCChHHHHHHhcCCCC-Cccc---cceeEEEecCchHH--HHHHHhhh
Q psy7342 258 QSKVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVT-PLAM---LSRFKGNCPKKWVK--LIRRQNVI 331 (338)
Q Consensus 258 ~~~~DlVITTGGts~G~~D~t~eal~~l~~~~lpG~~e~~~~~s~~~~-p~A~---lsR~vaGi~g~~v~--~a~~~~Il 331 (338)
+ +|+||||||+|+|++|+++++++++++..++| +.++++ |+.+ -.++++|+|||++. ++++.+++
T Consensus 243 ~--~DlvIttGG~S~G~~D~~~~al~~lG~~~f~~-------v~~kPGkp~~~g~~~~~~v~gLPGnP~sa~~~~~~~v~ 313 (411)
T PRK10680 243 Q--ADVVISSGGVSVGEADYTKTILEELGEIAFWK-------LAIKPGKPFAFGKLSNSWFCGLPGNPVSAALTFYQLVQ 313 (411)
T ss_pred C--CCEEEEcCCCCCCCcchHHHHHHhcCcEEEEE-------EEEecCcceEEEEECCeEEEECCCCHHHHHHHHHHHHH
Confidence 5 89999999999999999999999997444444 457765 4332 25799999999775 78899999
Q ss_pred cccccc
Q psy7342 332 PWLGLW 337 (338)
Q Consensus 332 P~l~~~ 337 (338)
|+|+.|
T Consensus 314 P~l~~l 319 (411)
T PRK10680 314 PLLAKL 319 (411)
T ss_pred HHHHHH
Confidence 999765
No 4
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=100.00 E-value=5.4e-48 Score=386.63 Aligned_cols=271 Identities=16% Similarity=0.096 Sum_probs=224.6
Q ss_pred chhhhHHHHHhhhhhcccCCCCCCCCCCccccchhhhhhhhcCCCCC--CCccc------ccccCCc--ceeEe-eeccC
Q psy7342 53 NAACIDERKELDNKCEIAHAPNKIMPNTSEKADTEKLNEKLNEGIND--HDRHT------KSIDFNG--INTSL-GKSGS 121 (338)
Q Consensus 53 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ad~~~l~~~l~~~~~~--~~~~~------~s~d~~g--~~~vi-g~~~~ 121 (338)
-.+++||++.+.+.+.+ ...++.+++.+|.||+||+++.+..+. |++.+ ++.|+.+ .+.++ |+..+
T Consensus 22 ~~s~~eA~~~i~~~~~~---~~~~e~v~l~~A~grvlAedv~a~~d~P~f~~SamDGyAv~~~d~~~~~~l~v~~g~i~A 98 (419)
T PRK14690 22 WTPVDTALDLLRARLGP---VTDIKELDLSDALGHVLAHDAVALRSNPPQANSAVDGYGFAGAAPEGAQVLPLIEGRAAA 98 (419)
T ss_pred cCCHHHHHHHHHhcCCC---CCCeEEEEHHHhCCCceeeeeecCCCCCCCccccccceEEecccccCCceeEeeeeEECC
Confidence 44566666666555443 112566777777777777777777663 55553 5556543 34555 88777
Q ss_pred CCC---CCCCCcEEEe-eCCCCCCCCcEEE-------------EcCCCCCCCCccccc--ccCCCcccCCCceeChhcHH
Q psy7342 122 SYG---SDGCTSAFEV-GGEPWPKKKKFVV-------------KHSVLPPHINLAKPE--WTEKSQQYSTTQVIRPDTNH 182 (338)
Q Consensus 122 ~~~---~~~~g~av~I-TGa~lP~gaDaVV-------------i~~~~~~g~nVr~~G--i~~Ge~ll~~G~~l~p~~i~ 182 (338)
|.. +..+|+|++| ||++||+|||||| |..++++|+|||++| +++||+|+++|++|+|.+|
T Consensus 99 G~~~~~~~~~G~av~I~TGa~lP~gaDaVV~~E~~~~~~~~i~i~~~~~~g~nIr~~Ged~~~G~~ll~~G~~l~p~~i- 177 (419)
T PRK14690 99 GVPFSGRVPEGMALRILTGAALPEGVDTVVLEEDVAGDGHRIAFHGPLKMGANTRKAGEDVIAGDVALPAGRRLTPADL- 177 (419)
T ss_pred CCCCCcccCCCcEEEEcCCCCCCCCCCEEEEEEEEEeCCCEEEECCCCCCCCCccccccccCCCCEEECCCCCCCHHHH-
Confidence 742 4577999999 9999999999999 567789999999999 9999999999999999999
Q ss_pred HHHhhCCCceeEeecCceEEEEecCCCcc-------CCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHH
Q psy7342 183 AQRCSTSMKYWELVRSTCHLLALVSDRCF-------NKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYW 255 (338)
Q Consensus 183 ~lLas~Gi~~v~V~~~prVaIIstGdEl~-------~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a 255 (338)
++||++|+.+|+||++|||+||+||||+. .|+++|+|+++|.++|++ +|+++..+.+++||++.|+++|+++
T Consensus 178 ~~Las~G~~~V~V~~~prV~IisTGdEl~~~g~~~~~g~i~dsN~~~L~a~l~~-~G~~v~~~~~v~Dd~~~i~~~l~~a 256 (419)
T PRK14690 178 ALLSAVGLTRVSVRRPLRVAVLSTGDELVEPGALAEVGQIYDANRPMLLALARR-WGHAPVDLGRVGDDRAALAARLDRA 256 (419)
T ss_pred HHHHhCCCCeeEeecCCEEEEEEccccccCCCCCCCCCeEEeCHHHHHHHHHHH-CCCEEEEEeeeCCCHHHHHHHHHHh
Confidence 99999999999999999999999999997 599999999999999999 9999999999999999999999999
Q ss_pred HhCCCCcEEEEeCCccCCCCCChHHHHHhccccccCChHHHHHHhcCCCC-Ccc---ccceeEEEecCchHH--HHHHHh
Q psy7342 256 VDQSKVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVT-PLA---MLSRFKGNCPKKWVK--LIRRQN 329 (338)
Q Consensus 256 ~~~~~~DlVITTGGts~G~~D~t~eal~~l~~~~lpG~~e~~~~~s~~~~-p~A---~lsR~vaGi~g~~v~--~a~~~~ 329 (338)
+++ +|+||||||+|+|++|+++++++++++..++| +.++++ |.. .-.++++|+|||++. ++|+.|
T Consensus 257 ~~~--~DlIItTGG~S~G~~D~v~~~l~~~G~~~~~~-------v~mkPGkp~~~~~~~~~pv~gLPGnP~aa~~~~~~~ 327 (419)
T PRK14690 257 AAE--ADVILTSGGASAGDEDHVSALLREAGAMQSWR-------IALKPGRPLALGLWQGVPVFGLPGNPVAALVCTLVF 327 (419)
T ss_pred Ccc--CCEEEEcCCccCCCcchHHHHHHhcCCEEEcc-------eeecCCCceEEEEECCeEEEECCCCHHHHHHHHHHH
Confidence 866 89999999999999999999999997544444 346665 332 225899999999875 788999
Q ss_pred hhcccccc
Q psy7342 330 VIPWLGLW 337 (338)
Q Consensus 330 IlP~l~~~ 337 (338)
+.|.|+.+
T Consensus 328 v~P~l~~l 335 (419)
T PRK14690 328 ARPAMSLL 335 (419)
T ss_pred HHHHHHHh
Confidence 99999765
No 5
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=100.00 E-value=6.2e-48 Score=400.94 Aligned_cols=303 Identities=14% Similarity=0.062 Sum_probs=260.6
Q ss_pred hhhhhhhHHHHHHHhhhhhhhhhhhhhcCcc-----cchhhhHHHHHhhhhhcccCCCCCCCCCCccccchhhhhhhhcC
Q psy7342 21 GILQYTCKIEQHLVSVTQDVVDHQLNESNFT-----QNAACIDERKELDNKCEIAHAPNKIMPNTSEKADTEKLNEKLNE 95 (338)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ad~~~l~~~l~~ 95 (338)
-+-.+...|++++...+|-++|..++-..|- +-.+++||++.+.+.+.+ . ..++.+++.+|.||+||+++.+
T Consensus 161 d~~~ia~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~eAl~~i~~~~~~-~--~~~e~V~l~~A~GRVlAedI~A 237 (597)
T PRK14491 161 DVAAIADFVLEYAQNWQAPAQDLPLAPACCCDLLSPAFLSVSQGLDKILSLVTP-V--TETEDVALDELDGRVLAQDVIS 237 (597)
T ss_pred CHHHHHHHHHHHHHhhccccCCCCCCCccccccCCCCCCCHHHHHHHHHhcCCC-C--CCeEEEEHHHhCCCeeeeeeec
Confidence 3455677889999999999999998888876 455889999888876655 1 1367889999999999999999
Q ss_pred CCCC--CCccc------ccccCCc-ceeEeeeccCCCC---CCCCCcEEEe-eCCCCCCCCcEEE-------------Ec
Q psy7342 96 GIND--HDRHT------KSIDFNG-INTSLGKSGSSYG---SDGCTSAFEV-GGEPWPKKKKFVV-------------KH 149 (338)
Q Consensus 96 ~~~~--~~~~~------~s~d~~g-~~~vig~~~~~~~---~~~~g~av~I-TGa~lP~gaDaVV-------------i~ 149 (338)
+.+. |++.+ ++.|+.+ .+.++|+..+|.. +..+|+|++| ||++||+|||||| +.
T Consensus 238 ~~d~P~f~~SamDGYAv~~~d~~~~~l~v~g~i~AG~~~~~~l~~G~avrI~TGa~iP~gaDaVV~~E~~~~~~~~i~i~ 317 (597)
T PRK14491 238 PVNVPQHTNSAMDGYAFRSDDLEPESYTLVGEVLAGHQYDGTLQAGEAVRIMTGAPVPAGADTVVMRELATQDGDKVSFD 317 (597)
T ss_pred CCCCCCCcccccceEEEeecccCCCeEEeeeEEcCCCCCCcccCCCcEEEeCcCCCCCCCCCEEEEEEEEEecCCEEEEC
Confidence 9884 66663 7777654 4778888888743 4577999999 9999999999999 56
Q ss_pred CCCCCCCCccccc--ccCCCcccCCCceeChhcHHHHHhhCCCceeEeecCceEEEEecCCCcc-------CCeeecCcH
Q psy7342 150 SVLPPHINLAKPE--WTEKSQQYSTTQVIRPDTNHAQRCSTSMKYWELVRSTCHLLALVSDRCF-------NKESEDKSG 220 (338)
Q Consensus 150 ~~~~~g~nVr~~G--i~~Ge~ll~~G~~l~p~~i~~lLas~Gi~~v~V~~~prVaIIstGdEl~-------~G~i~DsN~ 220 (338)
.++++|+|||++| +++||+|+++|++|+|.++ ++|||+|+.+|+||++|||+||+||||++ +|+++|+|+
T Consensus 318 ~~~~~g~nIr~~GeD~~~Ge~ll~~G~~i~p~~i-~lLAs~Gi~~V~V~~~prV~IistGdEl~~~g~~~~~g~i~dsn~ 396 (597)
T PRK14491 318 GGIKAGQNVRLAGEDLAQGQVALAAGTRLSAPEQ-GLLASLGFAEVPVFRRPKVAVFSTGDEVQAPGETLKPNCIYDSNR 396 (597)
T ss_pred CCCCCCCCccccccccCCCCEeECCcCCCCHHHH-HHHHHCCCCeEEeccCCEEEEEecCCeeccCCCcCCCCcEEeCCH
Confidence 7789999999999 9999999999999999999 99999999999999999999999999997 489999999
Q ss_pred HHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhccccccCChHHHHHHh
Q psy7342 221 PLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTE 300 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l~~~~lpG~~e~~~~~ 300 (338)
++|.++|++ +|+++..+++++||++.|+++|++++++ +|+||||||+|+|++|+++++++++++.. |+.+
T Consensus 397 ~~L~~~l~~-~G~~v~~~~~v~Dd~~~i~~~l~~a~~~--~DlIIttGG~s~G~~D~~~~al~~lG~i~-------f~~v 466 (597)
T PRK14491 397 FTIKAMAKK-LGCEVIDLGIIEDSEAALEATLEQAAAQ--ADVVISSGGVSVGDADYIKTALAKLGQID-------FWRI 466 (597)
T ss_pred HHHHHHHHH-CCCEEEEEEEeCCCHHHHHHHHHHhhhc--CCEEEEcCCccCCCcccHHHHHHhcCcEE-------EEEE
Confidence 999999999 9999999999999999999999999876 89999999999999999999999987433 3344
Q ss_pred cCCCC-Ccc---ccceeEEEecCchH--HHHHHHhhhcccccc
Q psy7342 301 GLKVT-PLA---MLSRFKGNCPKKWV--KLIRRQNVIPWLGLW 337 (338)
Q Consensus 301 s~~~~-p~A---~lsR~vaGi~g~~v--~~a~~~~IlP~l~~~ 337 (338)
.++++ |.. .-.+.++|+|||++ .++++.++.|.|+.+
T Consensus 467 ~~kPGkp~~~g~~~~~~v~~LPGnP~aa~~~~~~~v~P~l~~l 509 (597)
T PRK14491 467 NMRPGRPLAFGQIGDSPFFGLPGNPVAVMVSFLQFVEPALRKL 509 (597)
T ss_pred EeecCCcEEEEEECCEEEEEccCCcHHHHHHHHHHHHHHHHHH
Confidence 46665 322 12579999999977 477889999999765
No 6
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=100.00 E-value=5.1e-48 Score=384.08 Aligned_cols=265 Identities=19% Similarity=0.179 Sum_probs=225.5
Q ss_pred HHHHHhhhhhcccCCCCCCCCCCccccchhhhhhhhcCCCC--CCCccc------ccccCCc---ceeEeeeccCCCC--
Q psy7342 58 DERKELDNKCEIAHAPNKIMPNTSEKADTEKLNEKLNEGIN--DHDRHT------KSIDFNG---INTSLGKSGSSYG-- 124 (338)
Q Consensus 58 ~~~~~l~~~~~~~~~~~~~~~~~~~~ad~~~l~~~l~~~~~--~~~~~~------~s~d~~g---~~~vig~~~~~~~-- 124 (338)
++++.+.+...+ ..++.+++.++.||+||+++.+..+ .|++.+ ++.|+.+ .+.+.|+..+|..
T Consensus 3 ~a~~~~~~~~~~----~~~e~v~l~~a~GrvlAedI~A~~~~P~f~~SamDGyAv~~~d~~~~~~~l~v~g~i~AG~~~~ 78 (394)
T cd00887 3 AARELLLALAPP----LGTETVPLLEALGRVLAEDVVAPIDLPPFDNSAMDGYAVRAADTAGASVTLRVVGEIPAGEPPD 78 (394)
T ss_pred HHHHHHHhcCCC----CCeEEEEHHHhCCCeeeeeeecCCCCCCCCCccccceEEeeccccCCCeEEEEeeEECCCCCCC
Confidence 445544444322 2367778888888888888877766 366653 7777765 4678888888753
Q ss_pred -CCCCCcEEEe-eCCCCCCCCcEEE-------------EcCCCCCCCCccccc--ccCCCcccCCCceeChhcHHHHHhh
Q psy7342 125 -SDGCTSAFEV-GGEPWPKKKKFVV-------------KHSVLPPHINLAKPE--WTEKSQQYSTTQVIRPDTNHAQRCS 187 (338)
Q Consensus 125 -~~~~g~av~I-TGa~lP~gaDaVV-------------i~~~~~~g~nVr~~G--i~~Ge~ll~~G~~l~p~~i~~lLas 187 (338)
+..+|+|++| ||++||+|||||| |.+++++|+|||++| +++||+|+++|++|+|.++ ++|||
T Consensus 79 ~~~~~g~av~I~TGa~lP~gaDaVV~~E~~~~~~~~i~i~~~~~~g~nIr~~Gedi~~G~~ll~~G~~l~p~~i-~~Las 157 (394)
T cd00887 79 GPLGPGEAVRIMTGAPLPEGADAVVMVEDTEEEGGRVTITKPVKPGQNIRRAGEDIKAGDVLLPAGTRLTPADI-GLLAS 157 (394)
T ss_pred cccCCCeEEEEcCCCCCCCCCCEEEEEEeEEECCCEEEECCCCCCCCCCCcccCccCCCCEEECCCCCCCHHHH-HHHHh
Confidence 4567999999 9999999999999 677899999999999 9999999999999999999 99999
Q ss_pred CCCceeEeecCceEEEEecCCCcc-------CCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCC
Q psy7342 188 TSMKYWELVRSTCHLLALVSDRCF-------NKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSK 260 (338)
Q Consensus 188 ~Gi~~v~V~~~prVaIIstGdEl~-------~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~ 260 (338)
+|+.+|+||++|||+||+||||++ +|+++|+|+++|.++|++ +|+++..+.+++||++.|+++|++++++
T Consensus 158 ~Gi~~v~V~~~~rv~ii~tGdEl~~~g~~~~~g~i~dsn~~~l~~~l~~-~G~~~~~~~~v~Dd~~~i~~~l~~a~~~-- 234 (394)
T cd00887 158 LGIAEVPVYRRPRVAIISTGDELVEPGEPLAPGQIYDSNSYMLAALLRE-LGAEVVDLGIVPDDPEALREALEEALEE-- 234 (394)
T ss_pred CCCCEEEEecCCEEEEEeCCCcccCCCCCCCCCEEEEChHHHHHHHHHH-CCCEEEEeceeCCCHHHHHHHHHHHhhC--
Confidence 999999999999999999999998 799999999999999999 9999999999999999999999999876
Q ss_pred CcEEEEeCCccCCCCCChHHHHHhc-cccccCChHHHHHHhcCCCC-Cccc---cceeEEEecCchHH--HHHHHhhhcc
Q psy7342 261 VDLIFTSGGTGMSPRDVTPEAMNHL-IDKKVPCIEHIIQTEGLKVT-PLAM---LSRFKGNCPKKWVK--LIRRQNVIPW 333 (338)
Q Consensus 261 ~DlVITTGGts~G~~D~t~eal~~l-~~~~lpG~~e~~~~~s~~~~-p~A~---lsR~vaGi~g~~v~--~a~~~~IlP~ 333 (338)
+|+||||||+|+|++|+|+++++++ ++..++|+. ++++ |..+ -.+.++|+|||++. .+++.++.|+
T Consensus 235 ~DliittGG~s~g~~D~~~~al~~~g~~~~f~gv~-------~kPG~p~~~g~~~~~~v~~LPG~P~sa~~~~~~~v~p~ 307 (394)
T cd00887 235 ADVVITSGGVSVGDYDFVKEVLEELGGEVLFHGVA-------MKPGKPLAFGRLGGKPVFGLPGNPVSALVTFELFVRPA 307 (394)
T ss_pred CCEEEEeCCCCCCcchhHHHHHHhCCCeEEEEEEE-------EecCCCEEEEEECCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999 355555554 5554 3222 25899999999775 7788999999
Q ss_pred cccc
Q psy7342 334 LGLW 337 (338)
Q Consensus 334 l~~~ 337 (338)
|+.+
T Consensus 308 l~~l 311 (394)
T cd00887 308 LRKL 311 (394)
T ss_pred HHHH
Confidence 9875
No 7
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=100.00 E-value=3.1e-45 Score=384.00 Aligned_cols=273 Identities=14% Similarity=0.062 Sum_probs=231.3
Q ss_pred ccchhhhHHHHHhhhhhcccCCCCCCCCCCccccchhhhhhhhcCCCCC--CCccc------ccccCCcceeEeeeccCC
Q psy7342 51 TQNAACIDERKELDNKCEIAHAPNKIMPNTSEKADTEKLNEKLNEGIND--HDRHT------KSIDFNGINTSLGKSGSS 122 (338)
Q Consensus 51 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ad~~~l~~~l~~~~~~--~~~~~------~s~d~~g~~~vig~~~~~ 122 (338)
.+-.++.||++.+.+.+.+ . .++.+++.+|.||+||+++.+..+. |++.+ ++.|..+.+.++|+..+|
T Consensus 5 ~~mis~~eA~~~i~~~~~~-~---~~e~V~l~~A~GRVLAedv~A~~d~P~fd~SamDGYAv~~~d~~~~l~v~g~i~AG 80 (659)
T PLN02699 5 TEMISVEEALSIVLSVAAR-L---SPVIVPLHEALGKVLAEDIRAPDPLPPYPASVKDGYAVVASDGPGEYPVITESRAG 80 (659)
T ss_pred CCCCCHHHHHHHHHhcCCC-C---CcEEEEHHHcCCCceeeeeecCCCCCCCcccccceeEEecccCCCcceeeeeEcCC
Confidence 3446788888888776655 1 2678888899999999999998874 66653 777877778899998888
Q ss_pred CC----CCCCCcEEEe-eCCCCCCCCcEEE-------------------EcCCCCCCCCccccc--ccCCCcccCCCcee
Q psy7342 123 YG----SDGCTSAFEV-GGEPWPKKKKFVV-------------------KHSVLPPHINLAKPE--WTEKSQQYSTTQVI 176 (338)
Q Consensus 123 ~~----~~~~g~av~I-TGa~lP~gaDaVV-------------------i~~~~~~g~nVr~~G--i~~Ge~ll~~G~~l 176 (338)
.. +..+|+|++| ||++||+|||||| +..++++|+|||++| +++||+|+++|++|
T Consensus 81 ~~~~~~~l~~G~avrI~TGa~iP~GaDaVI~~E~~~~~~~~~~~~~~I~i~~~v~~g~nIr~~Ged~~~G~~ll~~G~~l 160 (659)
T PLN02699 81 NDGLGVTLTPGTVAYVTTGGPIPDGADAVVQVEDTEVVEDPLDGSKRVRILSQASKGQDIRPVGCDIEKDAKVLKAGERL 160 (659)
T ss_pred CCCCCcccCCCcEEEEccCCCCCCCCCEEEEEEEEEecCCCcCccceEEECCCCCCCCCccccccccCCCCEEECCcCCC
Confidence 53 3577999999 9999999999999 123478999999999 99999999999999
Q ss_pred ChhcHHHHHhhCCCceeEeecCceEEEEecCCCcc--------CCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHH
Q psy7342 177 RPDTNHAQRCSTSMKYWELVRSTCHLLALVSDRCF--------NKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEI 248 (338)
Q Consensus 177 ~p~~i~~lLas~Gi~~v~V~~~prVaIIstGdEl~--------~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I 248 (338)
+|.+| ++||++|+.+|+||++|||+||+|||||+ +|+++|+|+++|.++|++ +|+++..+.+++||++.|
T Consensus 161 ~p~~i-~lLas~Gi~~V~V~~kprV~visTGdELv~~g~~~~~~g~i~dsN~~~L~a~l~~-~G~~v~~~~iv~Dd~~~i 238 (659)
T PLN02699 161 GASEI-GLLATVGVTMVKVYPRPTVAILSTGDELVEPTTGTLGRGQIRDSNRAMLLAAAIQ-QQCKVVDLGIARDDEEEL 238 (659)
T ss_pred CHHHH-HHHHHCCCCeEEeecCCeEEEEeCCcccccCCCCCCCCCcEEeChHHHHHHHHHH-CCCEEEEEEEeCCCHHHH
Confidence 99999 99999999999999999999999999996 599999999999999999 999999999999999999
Q ss_pred HHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhccccccCChHHHHHHhcCCCC-Ccc---ccc---------eeEE
Q psy7342 249 KDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVT-PLA---MLS---------RFKG 315 (338)
Q Consensus 249 ~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l~~~~lpG~~e~~~~~s~~~~-p~A---~ls---------R~va 315 (338)
+++|++++++ ++|+||||||+|+|++|+++++++++++..++| +.++++ |+. +.+ +.++
T Consensus 239 ~~~l~~a~~~-~~DlvItTGGts~G~~D~v~~~l~~~G~i~f~g-------v~~kPGkp~~~a~~~~~~~~g~~~~~~v~ 310 (659)
T PLN02699 239 ERILDEAISS-GVDILLTSGGVSMGDRDFVKPLLEKRGTVYFSK-------VLMKPGKPLTFAEIDAKSAPSNSKKMLAF 310 (659)
T ss_pred HHHHHHhhcC-CCCEEEECCCCCCCCCccHHHHHHhcCcceEEE-------EEecCCCceeeEEecccccccccCCEEEE
Confidence 9999998863 389999999999999999999998876433333 334443 221 112 3699
Q ss_pred EecCchHH--HHHHHhhhcccccc
Q psy7342 316 NCPKKWVK--LIRRQNVIPWLGLW 337 (338)
Q Consensus 316 Gi~g~~v~--~a~~~~IlP~l~~~ 337 (338)
|+|||++. ++|+.|+.|.|+.+
T Consensus 311 gLPGnP~sa~~~f~~~v~P~l~~l 334 (659)
T PLN02699 311 GLPGNPVSCLVCFNLFVVPAIRYL 334 (659)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999774 78899999999865
No 8
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=100.00 E-value=3.6e-45 Score=382.45 Aligned_cols=277 Identities=19% Similarity=0.133 Sum_probs=233.8
Q ss_pred cCcccchhhhHHHHHhhhhhcccCCCCCCCCCCccccchhhhhhhhcCCCCC--CCccc------ccccCCc-------c
Q psy7342 48 SNFTQNAACIDERKELDNKCEIAHAPNKIMPNTSEKADTEKLNEKLNEGIND--HDRHT------KSIDFNG-------I 112 (338)
Q Consensus 48 ~~f~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ad~~~l~~~l~~~~~~--~~~~~------~s~d~~g-------~ 112 (338)
..|..-.++.||++.+.+...+.. -.++.+++.+|.||+||+++.+..+. |++.+ ++.|+.+ .
T Consensus 4 ~~~~~~~s~~eA~~~i~~~~~~~~--~~~e~v~l~~a~grvlAedi~a~~~~P~f~~SamDGyAv~~~d~~~~~~~~p~~ 81 (633)
T PRK14498 4 KIFLTLVSLEEAREILESLLSELP--LGTEEVPLEEALGRVLAEDVYAPIDVPPFDRSAMDGYAVRAADTFGASEANPVR 81 (633)
T ss_pred hhhccCCCHHHHHHHHHhhCCCCC--CCcEEEEHHHhCCCceeceeecCCCCCCCcccccceEEEeehhccccccCCCeE
Confidence 344446788888888777665511 02677888889999999999888773 66653 6777642 3
Q ss_pred eeEeeeccCCCC---CCCCCcEEEe-eCCCCCCCCcEEE--------------EcCCCCCCCCccccc--ccCCCcccCC
Q psy7342 113 NTSLGKSGSSYG---SDGCTSAFEV-GGEPWPKKKKFVV--------------KHSVLPPHINLAKPE--WTEKSQQYST 172 (338)
Q Consensus 113 ~~vig~~~~~~~---~~~~g~av~I-TGa~lP~gaDaVV--------------i~~~~~~g~nVr~~G--i~~Ge~ll~~ 172 (338)
++++|+..+|.. +..+|+|++| ||++||+|||||| +..++++|+|||++| +++||+|+++
T Consensus 82 l~v~~~i~AG~~~~~~~~~g~av~I~TGa~vP~gad~Vi~~E~~~~~~~~~i~i~~~~~~g~~ir~~G~d~~~G~~l~~~ 161 (633)
T PRK14498 82 LKLGGEVHAGEAPDVEVEPGEAVEIATGAPIPRGADAVVMVEDTEEVDDDTVEIYRPVAPGENVRPAGEDIVAGELILPK 161 (633)
T ss_pred EEEeeEEcCCCCCCcccCCCeEEEECCCCCCCCCCCEEEEEEEEEcCCCCEEEECCCCCCCCCcccCcCccCCCCEEECC
Confidence 678888888753 3467999999 9999999999999 445688999999999 9999999999
Q ss_pred CceeChhcHHHHHhhCCCceeEeecCceEEEEecCCCcc-------CCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCH
Q psy7342 173 TQVIRPDTNHAQRCSTSMKYWELVRSTCHLLALVSDRCF-------NKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEM 245 (338)
Q Consensus 173 G~~l~p~~i~~lLas~Gi~~v~V~~~prVaIIstGdEl~-------~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~ 245 (338)
|++|+|.++ ++||++|+.+|+||++|||+||+||||++ +|+++|+|+++|.++|++ +|+++..+.+++||+
T Consensus 162 g~~i~p~~i-~~las~g~~~v~v~~~prv~vi~tG~El~~~~~~~~~g~i~dsn~~~l~~~l~~-~g~~~~~~~~v~Dd~ 239 (633)
T PRK14498 162 GTRLTPRDI-GALAAGGVAEVPVYKKPRVGIISTGDELVEPGEPLKPGKIYDVNSYTLAAAVEE-AGGEPVRYGIVPDDE 239 (633)
T ss_pred CCCCCHHHH-HHHHHCCCCEEEEecCcEEEEEecCccccCCCCCCCCCEEEEChHHHHHHHHHH-CCCEEEEEEEeCCCH
Confidence 999999999 99999999999999999999999999987 599999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhccccccCChHHHHHHhcCCCCCccc----cceeEEEecCch
Q psy7342 246 EEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAM----LSRFKGNCPKKW 321 (338)
Q Consensus 246 e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l~~~~lpG~~e~~~~~s~~~~p~A~----lsR~vaGi~g~~ 321 (338)
+.|+++|++++++ +|+||||||+|+|++|+++++++++++..++|++ ++++...+ -.+.++|+|||+
T Consensus 240 ~~i~~~l~~~~~~--~D~iIttGG~s~g~~D~~~~~l~~~g~~~~~~v~-------~~PG~~~~~g~~~~~~v~~LPG~p 310 (633)
T PRK14498 240 EELEAALRKALKE--CDLVLLSGGTSAGAGDVTYRVIEELGEVLVHGVA-------IKPGKPTILGVIGGKPVVGLPGYP 310 (633)
T ss_pred HHHHHHHHHHHhc--CCEEEECCCCcCCCcccHHHHHHhcCCEEEeeEe-------ecCCCCEEEEEECCEEEEECCCCH
Confidence 9999999999875 8999999999999999999999999866666655 44442222 247899999996
Q ss_pred H--HHHHHHhhhcccccc
Q psy7342 322 V--KLIRRQNVIPWLGLW 337 (338)
Q Consensus 322 v--~~a~~~~IlP~l~~~ 337 (338)
. ..+++.++.|.|+.+
T Consensus 311 ~aa~~~~~~~v~P~l~~l 328 (633)
T PRK14498 311 VSALTIFEEFVAPLLRKL 328 (633)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 6 477889999999765
No 9
>KOG2371|consensus
Probab=100.00 E-value=1.9e-37 Score=298.67 Aligned_cols=282 Identities=22% Similarity=0.221 Sum_probs=226.1
Q ss_pred hcCcccch--hhhHHHHHhhhhhcccCCCCCCCCCCccccchhhhhhhhcCCCCC------CC-cccccccCCcceeEee
Q psy7342 47 ESNFTQNA--ACIDERKELDNKCEIAHAPNKIMPNTSEKADTEKLNEKLNEGIND------HD-RHTKSIDFNGINTSLG 117 (338)
Q Consensus 47 ~~~f~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ad~~~l~~~l~~~~~~------~~-~~~~s~d~~g~~~vig 117 (338)
.|..|..- ...|.++.|-..|....-+-.+--.+.... ++++++.....++- .+ -|+++.|+.|.+..+|
T Consensus 6 q~~~kvLp~~~~rd~~~~lek~~~e~~s~~~~~i~ts~~v-~~~il~e~~s~vdipP~tSikdGyAv~a~~~~g~rrivg 84 (411)
T KOG2371|consen 6 QSPSKVLPPATARDVFQKLEKLCKEAPSRIVTVIQTSLKV-GRKILEEIKSEVDIPPLTSIKDGYAVIANDGPGKRRIVG 84 (411)
T ss_pred cCCCCCCChhhhhhhhhHHHHHHHhhcccceeeEeccccc-chhhHHhhcCcccCCCcceeccceEEEecCCCcceEEEe
Confidence 34444433 344555666666654322211112222222 22444444444432 22 3458889999999999
Q ss_pred eccCCCC---CCCCCcEEEe-eCCCCCCCCcEEE--------------------EcCCCCCCCCccccc--ccCCCcccC
Q psy7342 118 KSGSSYG---SDGCTSAFEV-GGEPWPKKKKFVV--------------------KHSVLPPHINLAKPE--WTEKSQQYS 171 (338)
Q Consensus 118 ~~~~~~~---~~~~g~av~I-TGa~lP~gaDaVV--------------------i~~~~~~g~nVr~~G--i~~Ge~ll~ 171 (338)
.+.++.- +...++|||| ||+|+|.|||||| +...+++|+|||+.| ++ ||.+++
T Consensus 85 ~s~ag~~p~~~~~~~~cvrittG~pip~gadtvvqve~t~L~~~~n~~eEl~i~~lv~~~~g~~ir~vgsDi~-~e~i~k 163 (411)
T KOG2371|consen 85 LSTAGTPPNAPLISGECVRITTGGPIPDGADTVVQVEDTELLREDNGLEELEIEILVKPQEGDNIRPVGSDIK-GEIILK 163 (411)
T ss_pred eeccCCCCccccccCceEEecCCCcccccccceEEehhHHHHhhhccccccceEEEeecCCCCcccccccccc-ceeecc
Confidence 9998753 4567999999 9999999999999 556788999999999 88 999999
Q ss_pred CCceeChhcHHHHHhhCCCceeEeecCceEEEEecCCCcc------CCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCH
Q psy7342 172 TTQVIRPDTNHAQRCSTSMKYWELVRSTCHLLALVSDRCF------NKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEM 245 (338)
Q Consensus 172 ~G~~l~p~~i~~lLas~Gi~~v~V~~~prVaIIstGdEl~------~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~ 245 (338)
+|+.++|..| ++|...|+.++++|++|+|+|++||+|+. +|.+.|+|+.++..++++ .|+.+++.++++||.
T Consensus 164 ~~~~l~p~si-~~l~~~gi~~v~iykkpvVtV~sTgSel~~~d~~~pg~v~~~n~s~l~~l~~~-~Gf~~i~~gvv~D~~ 241 (411)
T KOG2371|consen 164 KGHHLDPSSI-GLLHALGIVQVEIYKKPVVTVSSTGSELNSPDRSGPGMVRDSNRSQLLELFQE-HGFTAIDAGVVPDDV 241 (411)
T ss_pred ccccCCcccc-eehhhccccccceecccEEEEeeccccccCccccCCceeeecchHHHHHHHHH-hCccccccccccCcH
Confidence 9999999999 99999999999999999999999999985 689999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhccccccCChHHHHHHhcCCCCCccccce-------eEEEec
Q psy7342 246 EEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR-------FKGNCP 318 (338)
Q Consensus 246 e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l~~~~lpG~~e~~~~~s~~~~p~A~lsR-------~vaGi~ 318 (338)
+.|+++|.++.+. +|+|||+||+|||++|++++++. .++.++| +.-.+..-+++-+++|.++| .++++|
T Consensus 242 ~~i~e~L~e~~~~--aDvIlTtGGvsm~~~D~~~~a~~-~l~f~i~-~g~V~mkpgl~~TsfA~l~~~gir~~k~i~~lP 317 (411)
T KOG2371|consen 242 TRIKEKLREASSF--ADVILTTGGVSMGPRDVTKEALK-VLEFEIH-LGRVDMKPGLPITSFATLSRAGIRGPKLIFNLP 317 (411)
T ss_pred HHHHHHHHHhhhh--ccEEEecCCccccchhhhhhHhh-hhheeee-cceeeccCCCcccceeeeeccccccceEEEECC
Confidence 9999999999987 89999999999999999999999 7777777 55555666666678899884 788899
Q ss_pred CchHH--HHHHHhhhccccc
Q psy7342 319 KKWVK--LIRRQNVIPWLGL 336 (338)
Q Consensus 319 g~~v~--~a~~~~IlP~l~~ 336 (338)
||+++ .+...+++|.|++
T Consensus 318 GnpvsAvv~c~lf~~PaLr~ 337 (411)
T KOG2371|consen 318 GNPVSAVVECNLFLLPALRH 337 (411)
T ss_pred CCcchhhhhhHHHHHHHHHH
Confidence 99776 4557899999876
No 10
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=99.94 E-value=6.3e-27 Score=212.75 Aligned_cols=123 Identities=34% Similarity=0.414 Sum_probs=113.8
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCE--EEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHA--HILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~--v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
.+++++||++||++.+|+++|+|+++|.++|++ +|++ ...+.++|||++.|+++|++++++.++|+||||||+|+|+
T Consensus 2 ~~~~~aIItvSd~~~~G~i~D~ng~~L~~~L~~-~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~g~ 80 (193)
T PRK09417 2 DTLKIGLVSISDRASSGVYEDKGIPALEEWLAS-ALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGPAR 80 (193)
T ss_pred CCcEEEEEEEcCcCCCCceeechHHHHHHHHHH-cCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCCCC
Confidence 468999999999999999999999999999999 9754 2355999999999999999998743599999999999999
Q ss_pred CCChHHHHHhccccccCChHHHHHHhcCCCCCccccceeEEEecCc
Q psy7342 275 RDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSRFKGNCPKK 320 (338)
Q Consensus 275 ~D~t~eal~~l~~~~lpG~~e~~~~~s~~~~p~A~lsR~vaGi~g~ 320 (338)
+|+|++++++++++++|||+++|++++++.+|.++|||+++|+.++
T Consensus 81 rDvTpeAv~~l~~keipG~~e~~r~~s~~~~~~a~LSRa~agv~~~ 126 (193)
T PRK09417 81 RDVTPEATLAVADKEMPGFGEQMRQISLKFVPTAILSRQVAVIRGQ 126 (193)
T ss_pred CCcHHHHHHHHhCCcCCcHHHHHHHHhcccccHHHhhcceeEEeCC
Confidence 9999999999999999999999999999999999999999998775
No 11
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=99.94 E-value=1.1e-26 Score=203.01 Aligned_cols=137 Identities=38% Similarity=0.531 Sum_probs=125.0
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCCh
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVT 278 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t 278 (338)
.+++||++|||+.+|+++|+|+++|+++|++ +|+++..+.+++||+++|+++|++++++..+|+||||||+|+|++|+|
T Consensus 1 ~~~~ii~~~~e~~~g~i~d~n~~~l~~~l~~-~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t 79 (152)
T cd00886 1 LRAAVLTVSDTRSAGEAEDRSGPALVELLEE-AGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLAPRDVT 79 (152)
T ss_pred CEEEEEEEcCcccCCCCccchHHHHHHHHHH-cCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcCc
Confidence 4799999999999999999999999999999 999999999999999999999999988223899999999999999999
Q ss_pred HHHHHhccccccCChHHHHHHhcCCCCCcccc---------ceeEEEecCchHH--HHHHHhhhcccccc
Q psy7342 279 PEAMNHLIDKKVPCIEHIIQTEGLKVTPLAML---------SRFKGNCPKKWVK--LIRRQNVIPWLGLW 337 (338)
Q Consensus 279 ~eal~~l~~~~lpG~~e~~~~~s~~~~p~A~l---------sR~vaGi~g~~v~--~a~~~~IlP~l~~~ 337 (338)
++++++++++.+||+++.|+..+++++|.+++ .+.++|+||++.. .+++. ++|.|+.|
T Consensus 80 ~~al~~~~~~~l~g~~~~~~~~~~~pg~~~~~~~~~~g~~~~~~v~~LPG~P~aa~~~~~~-v~P~l~~~ 148 (152)
T cd00886 80 PEATRPLLDKELPGFGEAFRALSLEETGTAMLSRAVAGIRGGTLIFNLPGSPKAVREALEV-ILPELPHL 148 (152)
T ss_pred HHHHHHHhCCcCccHHHHHHHhhcccCCcEEEechhheEECCEEEEECCCCHHHHHHHHHH-HHHHHHHH
Confidence 99999999999999999999999999875543 4689999999774 56667 99999765
No 12
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=99.94 E-value=1.2e-26 Score=205.82 Aligned_cols=139 Identities=38% Similarity=0.539 Sum_probs=130.9
Q ss_pred ecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCC
Q psy7342 196 VRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPR 275 (338)
Q Consensus 196 ~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~ 275 (338)
..+.+++||+++|..+.|...|.+|+.|.++|++ .|+++..+.+||||.+.|++++.+++++. +|+||||||||+++|
T Consensus 5 ~~~~~~~VvTVSd~r~~~~~~D~sG~~l~~~L~~-ag~~~~~~~iV~D~~~~I~~~l~~~~~~~-~DvvlttGGTG~t~R 82 (169)
T COG0521 5 PKPLRIAVVTVSDRRSTGEYEDKSGPLLVELLEE-AGHNVAAYTIVPDDKEQIRATLIALIDED-VDVVLTTGGTGITPR 82 (169)
T ss_pred ccceeEEEEEEecccccCCccccchhHHHHHHHH-cCCccceEEEeCCCHHHHHHHHHHHhcCC-CCEEEEcCCccCCCC
Confidence 3457899999999998898889999999999999 99999999999999999999999999886 999999999999999
Q ss_pred CChHHHHHhccccccCChHHHHHHhcCCC-CCccccceeEEEecC-----------chHHHHHHHhhhccccc
Q psy7342 276 DVTPEAMNHLIDKKVPCIEHIIQTEGLKV-TPLAMLSRFKGNCPK-----------KWVKLIRRQNVIPWLGL 336 (338)
Q Consensus 276 D~t~eal~~l~~~~lpG~~e~~~~~s~~~-~p~A~lsR~vaGi~g-----------~~v~~a~~~~IlP~l~~ 336 (338)
|+|+||+.++++|++|||.|.||++|++. +|.|+|||+++|+.+ |+++.+++++|+|.+..
T Consensus 83 DvTpEA~~~~~dKeipGFgE~fR~~S~~~~g~~AiLSRa~aGv~~~tlIf~LPGSp~Avr~~l~~iI~p~l~~ 155 (169)
T COG0521 83 DVTPEATRPLFDKEIPGFGELFRRLSLEEIGPTAILSRAVAGVRNGTLIFNLPGSPGAVRDALEGIILPELDY 155 (169)
T ss_pred cCCHHHHHHHHhccCCcHHHHHHHhhhhcCCCcEEEeeeeeEEeCCeEEEEcCCChhhHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999 999999999999987 36788888899999874
No 13
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=99.94 E-value=1.4e-26 Score=205.12 Aligned_cols=138 Identities=25% Similarity=0.356 Sum_probs=123.1
Q ss_pred ecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCC
Q psy7342 196 VRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPR 275 (338)
Q Consensus 196 ~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~ 275 (338)
++++|++||+||||+ ++++|+|+++|+++|++ +|+++..+.+++||++.|+++|+++++..++|+||||||+|+|++
T Consensus 2 ~~~~rv~vit~~d~~--~~~~d~n~~~l~~~L~~-~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~ 78 (163)
T TIGR02667 2 FIPLRIAILTVSDTR--TEEDDTSGQYLVERLTE-AGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGR 78 (163)
T ss_pred CCccEEEEEEEeCcC--CccCCCcHHHHHHHHHH-CCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCC
Confidence 578999999999996 56799999999999999 999999999999999999999999975334999999999999999
Q ss_pred CChHHHHHhccccccCChHHHHHHhcCCC-CCcccc---------ceeEEEecCchH--HHHHHHhhhccccc
Q psy7342 276 DVTPEAMNHLIDKKVPCIEHIIQTEGLKV-TPLAML---------SRFKGNCPKKWV--KLIRRQNVIPWLGL 336 (338)
Q Consensus 276 D~t~eal~~l~~~~lpG~~e~~~~~s~~~-~p~A~l---------sR~vaGi~g~~v--~~a~~~~IlP~l~~ 336 (338)
|+|++++++++++.+||+++.|+.+++++ ++..++ .+.++++|||+. ..+++.++.|.|.+
T Consensus 79 D~t~eal~~l~~~~l~G~~~~~~~i~~~p~G~~~~lsr~~~g~~~~~~v~~LPG~P~aa~~~~~~~v~P~l~~ 151 (163)
T TIGR02667 79 DVTPEALEPLFDKTVEGFGELFRQLSYEEIGTSTIQSRALAGLANGTFVFCLPGSTGACRTAWDKIIAAQLDA 151 (163)
T ss_pred CCcHHHHHHHHCCcCCcHHHHHHHHhhcccCHHHHHhhhhheeeCCeEEEECCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 544443 346777888866 57889999999876
No 14
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=99.93 E-value=2.4e-26 Score=198.31 Aligned_cols=132 Identities=33% Similarity=0.463 Sum_probs=119.1
Q ss_pred EEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHH
Q psy7342 202 LLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEA 281 (338)
Q Consensus 202 aIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~ea 281 (338)
|||+||||+++|+++|+|+++|+++|++ +|+++..+.++|||+++|+++|++++++ +|+||||||+|+|++|+|+++
T Consensus 1 aIi~~GdEl~~g~~~d~n~~~l~~~l~~-~G~~v~~~~~v~Dd~~~i~~~l~~~~~~--~D~VittGG~g~~~~D~t~~a 77 (144)
T PF00994_consen 1 AIISTGDELLSGQIRDSNGPFLAALLEE-LGIEVIRYGIVPDDPDAIKEALRRALDR--ADLVITTGGTGPGPDDVTPEA 77 (144)
T ss_dssp EEEEECHHHHTTSSEBHHHHHHHHHHHH-TTEEEEEEEEEESSHHHHHHHHHHHHHT--TSEEEEESSSSSSTTCHHHHH
T ss_pred CEEEECccCcCCceEEhHHHHHHHHHHH-cCCeeeEEEEECCCHHHHHHHHHhhhcc--CCEEEEcCCcCcccCCcccHH
Confidence 6999999999999999999999999999 9999999999999999999999999988 799999999999999999999
Q ss_pred HHhccccccCChHHHHHHhcCCCCC------ccccce----eEEEecCchH--HHHHHHhhhccccc
Q psy7342 282 MNHLIDKKVPCIEHIIQTEGLKVTP------LAMLSR----FKGNCPKKWV--KLIRRQNVIPWLGL 336 (338)
Q Consensus 282 l~~l~~~~lpG~~e~~~~~s~~~~p------~A~lsR----~vaGi~g~~v--~~a~~~~IlP~l~~ 336 (338)
+++++++.+||+++.|+.+++++++ .+++++ .++++||++. ..+++.+++|+|++
T Consensus 78 ~~~~~~~~l~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~v~~LPG~P~~~~~~~~~~v~P~L~~ 144 (144)
T PF00994_consen 78 LAEAGGRELPGFEELFRGVSMRPGKPTGLAPGAYLSRKGGKPVFGLPGNPVAAKVMLEVLVLPLLRH 144 (144)
T ss_dssp HHHHSSEE-HHHHHHHHHHHHHSTTTCETEGGGGGTSSETTEEEEE-SSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcccccChHHHHHHHHHhhcccceeeEEEeeCCCCcEEEEcCCCHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999988743 233454 6999999966 57788899999874
No 15
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=99.92 E-value=1.3e-24 Score=210.54 Aligned_cols=162 Identities=19% Similarity=0.147 Sum_probs=136.6
Q ss_pred ccCCCcccCCCceeChhcH--------HHHHhhCCCceeEeecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCE
Q psy7342 163 WTEKSQQYSTTQVIRPDTN--------HAQRCSTSMKYWELVRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHA 234 (338)
Q Consensus 163 i~~Ge~ll~~G~~l~p~~i--------~~lLas~Gi~~v~V~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~ 234 (338)
+++|+.| +++++-|..+ .+++++.|+.+|.||++|||+||+||||+.+|+++|+|+++|.++|++ +|++
T Consensus 118 v~~g~~v--A~~riiPl~v~~~~~~~a~~~~~~~gi~~V~v~r~~rv~II~TG~Ev~~G~i~D~~~~~l~~~L~~-~G~~ 194 (312)
T cd03522 118 VEAGQMV--ATVKIIPLAVPEALVERAEALARDGPLLRVAPFRPLRVGLIVTGSEVYGGRIEDKFGPVLRARLAA-LGVE 194 (312)
T ss_pred eCCCCEE--EEEEEeeeecCHHHHHHHHHHHHhCCCcEEEecCCCEEEEEEcCCcCCCCcEEEhHHHHHHHHHHH-CCCE
Confidence 5666777 6788878653 267888999999999999999999999999999999999999999999 9999
Q ss_pred EEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhccc-cccCChHHHHHHhcCCCCCccc----
Q psy7342 235 HILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLID-KKVPCIEHIIQTEGLKVTPLAM---- 309 (338)
Q Consensus 235 v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l~~-~~lpG~~e~~~~~s~~~~p~A~---- 309 (338)
+..+.++|||++.|+++|++++++ ++|+||||||+|++++|+||+++++++. ...+|.+ ++++.+.+
T Consensus 195 v~~~~iv~Dd~~~I~~ai~~~~~~-g~DlIItTGGtsvg~~D~tp~Ai~~~G~ei~~~Gv~-------v~PG~~l~~g~~ 266 (312)
T cd03522 195 LVEQVIVPHDEAAIAAAIAEALEA-GAELLILTGGASVDPDDVTPAAIRAAGGEVIRYGMP-------VDPGNLLLLGYL 266 (312)
T ss_pred EEEEEEcCCCHHHHHHHHHHHhcC-CCCEEEEeCCcccCCcchHHHHHHhcCceEEEeeec-------ccCCceEEEEEE
Confidence 999999999999999999999875 5899999999999999999999999974 3334433 33332211
Q ss_pred cceeEEEecCchHH--HHHHHhhhcccc
Q psy7342 310 LSRFKGNCPKKWVK--LIRRQNVIPWLG 335 (338)
Q Consensus 310 lsR~vaGi~g~~v~--~a~~~~IlP~l~ 335 (338)
-.++++|+||++.. .+..++|+|++-
T Consensus 267 ~~~pVigLPG~p~s~~~t~~d~VLprll 294 (312)
T cd03522 267 GGVPVIGLPGCARSPKLNGFDLVLPRLL 294 (312)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 24799999999775 467899999874
No 16
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=99.91 E-value=4.1e-24 Score=182.69 Aligned_cols=127 Identities=29% Similarity=0.350 Sum_probs=111.3
Q ss_pred eEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChH
Q psy7342 200 CHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTP 279 (338)
Q Consensus 200 rVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~ 279 (338)
|++||+||||+.+|+++|+|+++++++|++ +|+++....+++||+++|+++|++++++ +|+||||||+|+|++|+|+
T Consensus 1 ~v~ii~~G~El~~g~i~d~n~~~l~~~l~~-~G~~v~~~~~v~Dd~~~i~~~i~~~~~~--~DlvittGG~g~g~~D~t~ 77 (133)
T cd00758 1 RVAIVTVSDELSQGQIEDTNGPALEALLED-LGCEVIYAGVVPDDADSIRAALIEASRE--ADLVLTTGGTGVGRRDVTP 77 (133)
T ss_pred CEEEEEeCccccCCceEEchHHHHHHHHHH-CCCEEEEeeecCCCHHHHHHHHHHHHhc--CCEEEECCCCCCCCCcchH
Confidence 689999999999999999999999999999 9999999999999999999999999987 8999999999999999999
Q ss_pred HHHHhccccccCChHHHHHHhcCCCCCccc----cceeEEEecCchH--HHHHHHhhhccc
Q psy7342 280 EAMNHLIDKKVPCIEHIIQTEGLKVTPLAM----LSRFKGNCPKKWV--KLIRRQNVIPWL 334 (338)
Q Consensus 280 eal~~l~~~~lpG~~e~~~~~s~~~~p~A~----lsR~vaGi~g~~v--~~a~~~~IlP~l 334 (338)
+++++++++.+|| ....++++...+ -.+.++++||++. ..+++.+++|.|
T Consensus 78 ~ai~~~g~~~~~g-----~~~~~~pg~~~~~~~~~~~~i~~LPG~p~a~~~~~~~~v~p~l 133 (133)
T cd00758 78 EALAELGEREAHG-----KGVALAPGSRTAFGIIGKVLIINLPGSPKSALTTFEALVLPAL 133 (133)
T ss_pred HHHHHhcCEEecc-----CcccccCCCceEEEEECCEEEEECCCCHHHHHHHHHHhheecC
Confidence 9999999999995 222344432221 2589999999966 578889999975
No 17
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=99.91 E-value=1.3e-23 Score=182.12 Aligned_cols=131 Identities=31% Similarity=0.393 Sum_probs=115.3
Q ss_pred ceEEEEecCCCccC-------CeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 199 TCHLLALVSDRCFN-------KESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 199 prVaIIstGdEl~~-------G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
||++|++||||++. |+++|+|+++|+++|++ +|+++..+.+++||+++|+++|++++++ +|+||||||+|
T Consensus 1 prv~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~-~G~~v~~~~~v~Dd~~~i~~~l~~~~~~--~DliIttGG~g 77 (144)
T TIGR00177 1 PRVAVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEE-AGFNVSRLGIVPDDPEEIREILRKAVDE--ADVVLTTGGTG 77 (144)
T ss_pred CEEEEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHH-CCCeEEEEeecCCCHHHHHHHHHHHHhC--CCEEEECCCCC
Confidence 79999999999994 99999999999999999 9999999999999999999999999876 89999999999
Q ss_pred CCCCCChHHHHHhccccccCChHHHHHHhcCCCCCccc----cceeEEEecCchH--HHHHHHhhhc
Q psy7342 272 MSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAM----LSRFKGNCPKKWV--KLIRRQNVIP 332 (338)
Q Consensus 272 ~G~~D~t~eal~~l~~~~lpG~~e~~~~~s~~~~p~A~----lsR~vaGi~g~~v--~~a~~~~IlP 332 (338)
+|++|+|+++++++++..++|+.++.....++++..+. -.+.++|+||++. ..+++.++.|
T Consensus 78 ~g~~D~t~~ai~~~g~~~~~gv~~~~~~~~~~PG~~~~~~~~~~~~v~~LPG~P~aa~~~~~~~v~p 144 (144)
T TIGR00177 78 VGPRDVTPEALEELGEKEIPGFGEYFTAVLSRPGKPATAGVRGGTLIFGLPGNPVSALVTFEVLVLP 144 (144)
T ss_pred CCCCccHHHHHHHhCcEEEeeeccccchhhCCCCCceEEEEECCEEEEECCCCHHHHHHHHHHHccC
Confidence 99999999999999999999997664445556543222 3589999999966 5778888876
No 18
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=99.90 E-value=2.3e-23 Score=201.77 Aligned_cols=135 Identities=33% Similarity=0.455 Sum_probs=120.3
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCCh
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVT 278 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t 278 (338)
.+++||++|||+.+|+++|+|+++|.++|++ +|+++..+.++|||++.|+++|++++.+ ++|+||||||+|+|++|+|
T Consensus 156 ~~~aIltvsde~~~G~i~Dsn~~~L~~~L~~-~G~~v~~~~iVpDD~~~I~~al~~a~~~-~~DlIITTGGtg~g~~D~t 233 (312)
T PRK03604 156 TSAAVLVLSDSIAAGTKEDRSGKLIVEGLEE-AGFEVSHYTIIPDEPAEIAAAVAAWIAE-GYALIITTGGTGLGPRDVT 233 (312)
T ss_pred cEEEEEEECCcCCCCcEEEhHHHHHHHHHHH-CCCEEEEEEEcCCCHHHHHHHHHHhhhC-CCCEEEECCCCCCCCCccH
Confidence 3788999999999999999999999999999 9999999999999999999999999643 3899999999999999999
Q ss_pred HHHHHhccccccCChHHHHHHhcCCCCCccccc---------eeEEEecCchHH--HHHHHhhhccccc
Q psy7342 279 PEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLS---------RFKGNCPKKWVK--LIRRQNVIPWLGL 336 (338)
Q Consensus 279 ~eal~~l~~~~lpG~~e~~~~~s~~~~p~A~ls---------R~vaGi~g~~v~--~a~~~~IlP~l~~ 336 (338)
+|++++++++.+||+.+.|+..+++..|.++++ +.++++|||+.. .+ .++++|.|.+
T Consensus 234 peAl~~lg~~~~~Gvae~ir~~g~~~~Pga~lsr~~~G~~~~tlI~~LPG~P~aa~~~-~~~llp~l~h 301 (312)
T PRK03604 234 PEALAPLLERRLPGIAEALRSWGQGRTPTAMLSRLVAGMIGNSLVVALPGSPGGASDA-LAVLLPALFH 301 (312)
T ss_pred HHHHHHhcCccccchHHHHHhcccCCCCCcccCcceEEEECCEEEEECCCCHHHHHHH-HHHHHHHHHH
Confidence 999999999999999999999988777777665 456778888774 33 4678998765
No 19
>PRK01215 competence damage-inducible protein A; Provisional
Probab=99.86 E-value=2.1e-21 Score=184.41 Aligned_cols=138 Identities=17% Similarity=0.179 Sum_probs=119.8
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRD 276 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D 276 (338)
.+|+++||+||||++.|+++|+|+++|++.|++ +|+++....+++||++.|+++|++++++ +|+||||||+|++++|
T Consensus 2 ~~~~v~Ii~~GdEll~G~i~dtn~~~l~~~L~~-~G~~v~~~~~v~Dd~~~I~~~l~~a~~~--~DlVIttGG~g~t~dD 78 (264)
T PRK01215 2 DKWFAWIITIGNELLIGRTVNTNASWIARRLTY-LGYTVRRITVVMDDIEEIVSAFREAIDR--ADVVVSTGGLGPTYDD 78 (264)
T ss_pred CCCEEEEEEEChhccCCeEEEhhHHHHHHHHHH-CCCeEEEEEEeCCCHHHHHHHHHHHhcC--CCEEEEeCCCcCChhh
Confidence 479999999999999999999999999999999 9999999999999999999999999986 7999999999999999
Q ss_pred ChHHHHHhccccccCChHHHHHHhc-------CCC----CCccccc----------------------eeEEEecCchH-
Q psy7342 277 VTPEAMNHLIDKKVPCIEHIIQTEG-------LKV----TPLAMLS----------------------RFKGNCPKKWV- 322 (338)
Q Consensus 277 ~t~eal~~l~~~~lpG~~e~~~~~s-------~~~----~p~A~ls----------------------R~vaGi~g~~v- 322 (338)
+|++++.+++++.++++++.++++. ... .++|+++ +.++.+||.|.
T Consensus 79 ~t~eaia~~~g~~l~~~~e~~~~l~~~~~~~~~~~~~~~~k~A~~P~ga~~l~N~~Gtapg~~~~~~~~~i~~LPG~P~e 158 (264)
T PRK01215 79 KTNEGFAKALGVELELNEDALRMILEKYEKRGIPLTPERKKMAMMPPGAVPLENPVGTAPGILIEHGGKDIVALPGVPRE 158 (264)
T ss_pred hHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCCCChhHHheeeCCCCCEecCCCCCcCCeEEEEECCEEEEEeCCChHH
Confidence 9999999999999999999888652 110 1233333 25778888865
Q ss_pred -HHHHHHhhhcccccc
Q psy7342 323 -KLIRRQNVIPWLGLW 337 (338)
Q Consensus 323 -~~a~~~~IlP~l~~~ 337 (338)
+.+++.+++|+|+.+
T Consensus 159 ~~~m~~~~v~p~l~~~ 174 (264)
T PRK01215 159 MEAIFENFVEPLLKNR 174 (264)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 578899999998753
No 20
>PF03453 MoeA_N: MoeA N-terminal region (domain I and II); InterPro: IPR005110 This entry represents the N-terminal and linker domains of the MoeA protein. Proteins in this family contain two structural domains, one of which contains the conserved DGXA motif. These two domains are found in proteins involved in biosynthesis of molybdopterin cofactor however the exact molecular function of this region is uncertain. The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) [].; GO: 0032324 molybdopterin cofactor biosynthetic process; PDB: 1UZ5_A 1T3E_B 2FTS_A 2FU3_A 1XI8_A 1WU2_A 2NRS_A 2NRP_B 2NRO_A 2NQV_A ....
Probab=99.85 E-value=1.3e-21 Score=173.08 Aligned_cols=131 Identities=15% Similarity=0.085 Sum_probs=95.5
Q ss_pred hhhhHHHHHhhhhhcccCCCCCCCCCCccccchhhhhhhhcCCCCC--CCccc------ccccCCc---ceeEeeeccCC
Q psy7342 54 AACIDERKELDNKCEIAHAPNKIMPNTSEKADTEKLNEKLNEGIND--HDRHT------KSIDFNG---INTSLGKSGSS 122 (338)
Q Consensus 54 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ad~~~l~~~l~~~~~~--~~~~~------~s~d~~g---~~~vig~~~~~ 122 (338)
++++||++.|++.+.+ .. ++.+++.+|.||+||+++.+..+. |++.+ ++.|+.+ .++++|+..+|
T Consensus 2 is~~eA~~~i~~~~~~---~~-~e~v~l~~a~grvlAedi~a~~~~P~~~~SamDGyAv~~~d~~~~~~~l~v~~~i~aG 77 (162)
T PF03453_consen 2 ISVEEALEIILSHIKP---LP-TETVPLDDALGRVLAEDIYAPRDVPPFDRSAMDGYAVRSEDTSGASPELRVVGEIAAG 77 (162)
T ss_dssp BEHHHHHHHHHHHS--------EEEEEGGGGTT-BBSS-EE-SS-BSSS-EESSSEEEE-GGGGTTCCTEEEEEEEEBTT
T ss_pred CCHHHHHHHHHhhCCC---CC-cEEEEHHHhCCCeeeeeeecCCCCCCCcchhhhccEEecccccCCCcceeeeeeeecc
Confidence 4678899988888887 22 688999999999999999888773 77663 7778877 47889998887
Q ss_pred CC---CCCCCcEEEe-eCCCCCCCCcEEE-------------EcCCCCCCCCccccc--ccCCCcccCCCceeChhcHHH
Q psy7342 123 YG---SDGCTSAFEV-GGEPWPKKKKFVV-------------KHSVLPPHINLAKPE--WTEKSQQYSTTQVIRPDTNHA 183 (338)
Q Consensus 123 ~~---~~~~g~av~I-TGa~lP~gaDaVV-------------i~~~~~~g~nVr~~G--i~~Ge~ll~~G~~l~p~~i~~ 183 (338)
.. +..+|+|+|| ||++||+|+|||| +..++++|+|||++| +++||+|+++|++|+|.+| +
T Consensus 78 ~~~~~~l~~g~av~I~TGa~vP~g~DaVV~~E~~~~~~~~i~i~~~~~~g~nIr~~G~di~~G~~ll~~G~~l~p~~i-~ 156 (162)
T PF03453_consen 78 DPPPIPLQPGEAVRIMTGAPVPEGADAVVPIEDTEVEGDEIRILKPVKPGQNIRPKGEDIKKGEVLLKKGTRLTPAHI-G 156 (162)
T ss_dssp C--SSB--TTEEEEE-TTSB--TT-SEEEEGGGCEEETTEEEESS--STTTTEE-TTSSB-TTSEEE-TTBB--HHHH-H
T ss_pred ccccccCCCCeEEEEeCCCccCCCCCEEEEehheeecccEEEEeeccCCCCcEEeCCccccCCCEEECCCCCCCHHHH-H
Confidence 43 4678999999 9999999999999 678999999999999 9999999999999999999 9
Q ss_pred HHhhCC
Q psy7342 184 QRCSTS 189 (338)
Q Consensus 184 lLas~G 189 (338)
+|+++|
T Consensus 157 lLas~G 162 (162)
T PF03453_consen 157 LLASAG 162 (162)
T ss_dssp HHHHTT
T ss_pred HHHhCC
Confidence 999988
No 21
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=99.84 E-value=1.4e-20 Score=167.89 Aligned_cols=96 Identities=23% Similarity=0.326 Sum_probs=92.6
Q ss_pred eEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChH
Q psy7342 200 CHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTP 279 (338)
Q Consensus 200 rVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~ 279 (338)
+++||+||||+..|+++|+|+++|+++|++ +|+++....+++||++.|+++|++++++ +|+||||||+|++++|+|+
T Consensus 1 ~v~Ii~~GdEl~~G~i~d~n~~~l~~~L~~-~G~~v~~~~~v~Dd~~~I~~~l~~~~~~--~dlVIttGG~G~t~~D~t~ 77 (170)
T cd00885 1 TAEIIAIGDELLSGQIVDTNAAFLAKELAE-LGIEVYRVTVVGDDEDRIAEALRRASER--ADLVITTGGLGPTHDDLTR 77 (170)
T ss_pred CEEEEEECccccCCeEEEhHHHHHHHHHHH-CCCEEEEEEEeCCCHHHHHHHHHHHHhC--CCEEEECCCCCCCCCChHH
Confidence 589999999999999999999999999999 9999999999999999999999999976 8999999999999999999
Q ss_pred HHHHhccccccCChHHHHH
Q psy7342 280 EAMNHLIDKKVPCIEHIIQ 298 (338)
Q Consensus 280 eal~~l~~~~lpG~~e~~~ 298 (338)
+++.+++++.+++++++++
T Consensus 78 ea~~~~~~~~l~~~~e~~~ 96 (170)
T cd00885 78 EAVAKAFGRPLVLDEEALE 96 (170)
T ss_pred HHHHHHhCCCcccCHHHHH
Confidence 9999999999999999954
No 22
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=99.84 E-value=1.9e-20 Score=159.83 Aligned_cols=118 Identities=31% Similarity=0.462 Sum_probs=101.5
Q ss_pred EEEecCCCccCC-eeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHH
Q psy7342 202 LLALVSDRCFNK-ESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPE 280 (338)
Q Consensus 202 aIIstGdEl~~G-~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~e 280 (338)
+|++||||++.+ +++|+|+++|.++|++ +|+++..+.+++||++.|+++|++++++ +|+||||||+|+|++|+|++
T Consensus 1 ~vi~~GdEi~~~~~~~d~~~~~l~~~l~~-~G~~~~~~~~v~Dd~~~I~~~l~~~~~~--~dliittGG~g~g~~D~t~~ 77 (135)
T smart00852 1 AIISTGDELLSGGQIYDSNGPALAELLTE-LGIEVTRYVIVPDDKEAIKEALREALER--ADLVITTGGTGPGPDDVTPE 77 (135)
T ss_pred CEEEEechhhcCCCcccCcHHHHHHHHHH-CCCeEEEEEEeCCCHHHHHHHHHHHHhC--CCEEEEcCCCCCCCCcCcHH
Confidence 489999999977 8899999999999999 9999999999999999999999999976 89999999999999999999
Q ss_pred HHHhccccccCChHHHHHHhcCCCCCc----cc----cceeEEEecCchHH
Q psy7342 281 AMNHLIDKKVPCIEHIIQTEGLKVTPL----AM----LSRFKGNCPKKWVK 323 (338)
Q Consensus 281 al~~l~~~~lpG~~e~~~~~s~~~~p~----A~----lsR~vaGi~g~~v~ 323 (338)
++++++++.++++.+.|+.-+.. ... +. -.+.++++||++..
T Consensus 78 ~l~~~~~~~~~~~~~~~~Pg~~~-~~~~~~~~~~~g~~~~~i~~LPG~P~~ 127 (135)
T smart00852 78 AVAEALGKELPGFGEAMRPGGAP-TVLANLSGTAPGFRGKLVFGLPGSPVA 127 (135)
T ss_pred HHHHHhCCcCCChhhhhcccCCc-cccccccCcCCeEeCcEEEECCCCHHH
Confidence 99999888888888877643321 111 11 13589999999664
No 23
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=99.79 E-value=7.2e-19 Score=185.34 Aligned_cols=138 Identities=36% Similarity=0.554 Sum_probs=117.6
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcc---c-CCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQED---F-QHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGM 272 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~---~-G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~ 272 (338)
.+++|+||+||||++.+...|.+++.+.++++++ + |+++..+.+++||++.|+++|+++++..++|+||||||+|+
T Consensus 457 ~~~rvaIIt~sde~~~~~~~D~sg~~~~~il~~n~~~l~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVItTGGts~ 536 (659)
T PLN02699 457 PEVKVAILTVSDTVSSGAGPDRSGPRAVSVVNSSSEKLGGAKVVATAVVPDDVEKIKDVLQKWSDIDRMDLILTLGGTGF 536 (659)
T ss_pred CCcEEEEEEECCcccCCCcccccchHHHHHHHhhhhhcCCcEEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCccC
Confidence 4799999999999999999999999888877652 4 99999999999999999999999874334899999999999
Q ss_pred CCCCChHHHHHhccccccCChHHHHHHhcCCCCCccccceeEEEe---------cCchH--HHHHHHhhhcccc
Q psy7342 273 SPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSRFKGNC---------PKKWV--KLIRRQNVIPWLG 335 (338)
Q Consensus 273 G~~D~t~eal~~l~~~~lpG~~e~~~~~s~~~~p~A~lsR~vaGi---------~g~~v--~~a~~~~IlP~l~ 335 (338)
|++|+|++++++++++.+||+++.|+..+++..|.+++||+++|+ |||+. ..+++ +|+|.|.
T Consensus 537 g~~D~tpeal~~l~~k~~PG~~~~~~~~~~~~~Pg~~lSR~~~g~~~~~lv~~LPG~P~aa~~~~~-~i~p~l~ 609 (659)
T PLN02699 537 TPRDVTPEATKEVIQKETPGLLYVMMQESLKVTPFAMLSRSAAGIRGSTLIINMPGNPNAVAECME-ALLPALK 609 (659)
T ss_pred CCCcchHHHHHHHHhccCCcHHHHHHHhhhcccCCceeeeeEEEEECCEEEEECCCCHHHHHHHHH-HHHHhHH
Confidence 999999999999999999999999998888888888888877765 55554 45554 4555443
No 24
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=99.78 E-value=1.3e-18 Score=174.65 Aligned_cols=136 Identities=17% Similarity=0.174 Sum_probs=111.0
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCCh
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVT 278 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t 278 (338)
++++||+||||+..|+++|+|+++|+++|++ +|+++..+.+++||++.|+++|++++++ +|+||||||+|++++|+|
T Consensus 1 m~v~Ii~tGdEll~G~i~dtN~~~l~~~L~~-~G~~v~~~~~v~Dd~~~i~~~l~~a~~~--~DlVIttGGlgpt~dD~t 77 (413)
T TIGR00200 1 LKAEIISVGDELLLGQIVNTNAQWLADFLAH-QGLPLSRRTTVGDNPERLKTIIRIASER--ADVLIFNGGLGPTSDDLT 77 (413)
T ss_pred CEEEEEEECccccCCcEEEchHHHHHHHHHH-CCCeEEEEEEeCCCHHHHHHHHHHHhcC--CCEEEEcCCCCCCCcccH
Confidence 5899999999999999999999999999999 9999999999999999999999999876 899999999999999999
Q ss_pred HHHHHhccccccCChHHHHHHh-------cC------------CCC-----------Ccccc----ceeEEEecCchH--
Q psy7342 279 PEAMNHLIDKKVPCIEHIIQTE-------GL------------KVT-----------PLAML----SRFKGNCPKKWV-- 322 (338)
Q Consensus 279 ~eal~~l~~~~lpG~~e~~~~~-------s~------------~~~-----------p~A~l----sR~vaGi~g~~v-- 322 (338)
++++.+++.+.+--.++.+..+ +. +.+ |-.+. .+.++++||+|.
T Consensus 78 ~eava~~~g~~l~~~~~~~~~i~~~~~~~g~~~~~~n~kqA~~p~ga~~l~N~~G~APG~~~~~~~~~~i~~LPG~P~e~ 157 (413)
T TIGR00200 78 AETIATAKGEPLVLNEAWLKEIERYFHETGRVMAPNNRKQALLPAGAEFLANPVGTAPGMFAVQLNRCLMLFTPGVPSEF 157 (413)
T ss_pred HHHHHHHhCCCcEECHHHHHHHHHHHHhcCCCCChHHHHhcCCCCCCEECCCCCCCCCeeEEEecCCEEEEEeCCCcHHH
Confidence 9999998877664444433321 10 000 11111 246788999977
Q ss_pred HHHHHHhhhcccccc
Q psy7342 323 KLIRRQNVIPWLGLW 337 (338)
Q Consensus 323 ~~a~~~~IlP~l~~~ 337 (338)
+.+++.+++|+|..+
T Consensus 158 ~~m~~~~v~p~l~~~ 172 (413)
T TIGR00200 158 RVMVEHEALPRLRER 172 (413)
T ss_pred HHHHHHHhhHHHHHh
Confidence 477888999998753
No 25
>PRK00549 competence damage-inducible protein A; Provisional
Probab=99.74 E-value=1.5e-17 Score=167.02 Aligned_cols=135 Identities=21% Similarity=0.256 Sum_probs=112.9
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCCh
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVT 278 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t 278 (338)
++++||+||||+..|+++|+|+++|+++|++ +|+++....+|+||++.|+++|+++.++ +|+||||||+|++++|+|
T Consensus 1 m~~~ii~~G~Ell~G~i~DtN~~~L~~~L~~-~G~~v~~~~~v~Dd~~~I~~~l~~a~~~--~DlVItTGGlGpt~dD~t 77 (414)
T PRK00549 1 MKAEIIAVGTELLLGQIVNTNAQFLSEKLAE-LGIDVYHQTVVGDNPERLLSALEIAEER--SDLIITTGGLGPTKDDLT 77 (414)
T ss_pred CEEEEEEecccccCCceeEhhHHHHHHHHHH-CCCeEEEEEEeCCCHHHHHHHHHHhccC--CCEEEECCCCCCCCCccH
Confidence 5799999999999999999999999999999 9999999999999999999999988765 899999999999999999
Q ss_pred HHHHHhccccccCChHHHHHHh-------cCCCC----Cccc-------------------c---ceeEEEecCchH--H
Q psy7342 279 PEAMNHLIDKKVPCIEHIIQTE-------GLKVT----PLAM-------------------L---SRFKGNCPKKWV--K 323 (338)
Q Consensus 279 ~eal~~l~~~~lpG~~e~~~~~-------s~~~~----p~A~-------------------l---sR~vaGi~g~~v--~ 323 (338)
++++.+++++.++..++.+..+ +...+ .+|+ + .+.++-+||-|. +
T Consensus 78 ~ea~a~~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~n~kqA~~P~ga~~l~N~~GtApG~~~~~~~~~i~~lPGvP~Em~ 157 (414)
T PRK00549 78 KETVAKFLGRELVLDEEALAKIEDYFAKRGREMTENNRKQALIPEGATVLPNPVGTAPGMIIEVDGKTYIVLPGPPSELK 157 (414)
T ss_pred HHHHHHHhCCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhcCCCCCEECcCCCCcCCeEEEEECCEEEEEeCCCcHHHH
Confidence 9999999999999988887632 11000 0111 1 124667788755 5
Q ss_pred HHHHHhhhccccc
Q psy7342 324 LIRRQNVIPWLGL 336 (338)
Q Consensus 324 ~a~~~~IlP~l~~ 336 (338)
.+++++++|+|+.
T Consensus 158 ~m~~~~v~p~l~~ 170 (414)
T PRK00549 158 PMFEEYVVPYLSS 170 (414)
T ss_pred HHHHHHhHHHHHh
Confidence 7788899999874
No 26
>PRK03673 hypothetical protein; Provisional
Probab=99.73 E-value=2.1e-17 Score=164.99 Aligned_cols=137 Identities=16% Similarity=0.166 Sum_probs=110.6
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCC
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDV 277 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~ 277 (338)
.|++.||+||||+..|+++|+|+++|+++|.+ .|+++....+++||++.|.++|++++++ +|+||||||+|+|++|+
T Consensus 1 ~~~v~Iis~GdEll~G~i~dtN~~~la~~L~~-~G~~v~~~~~v~D~~~~i~~~l~~a~~~--~DlVI~tGGlGpt~dD~ 77 (396)
T PRK03673 1 MLRVEMLSTGDEVLHGQIVDTNAAWLADFFFH-QGLPLSRRNTVGDNLDALVAILRERSQH--ADVLIVNGGLGPTSDDL 77 (396)
T ss_pred CCEEEEEEecccCCCCeEEEhHHHHHHHHHHH-CCCEEEEEEEcCCCHHHHHHHHHHHhcc--CCEEEEcCCCCCCCccc
Confidence 37999999999999999999999999999999 9999999999999999999999999887 89999999999999999
Q ss_pred hHHHHHhccccccCChHHHHHHh-------c--CCC--CCcccc----------------------ceeEEEecCchH--
Q psy7342 278 TPEAMNHLIDKKVPCIEHIIQTE-------G--LKV--TPLAML----------------------SRFKGNCPKKWV-- 322 (338)
Q Consensus 278 t~eal~~l~~~~lpG~~e~~~~~-------s--~~~--~p~A~l----------------------sR~vaGi~g~~v-- 322 (338)
|++++.+.+.+.+--.++.+..+ + +.+ -++|++ .+.++-+||-|.
T Consensus 78 t~~avA~a~g~~L~~d~e~~~~i~~~f~~~~~~m~~~n~kQA~~P~ga~~l~N~~GtApG~~~~~~~~~i~~LPGvP~Em 157 (396)
T PRK03673 78 SALAAATAAGEGLVLHEEWLAEMERFFAERGRVMAPSNRKQAELPASAEMIDNPVGTACGFALQLNRCLMFFTPGVPSEF 157 (396)
T ss_pred HHHHHHHHcCCCceeCHHHHHHHHHHHHhcCCCCChhHHhhccCCCCCeeccCCCccCCcEEEEECCEEEEEECCChHHH
Confidence 99999999887665555554321 1 100 011211 123555677544
Q ss_pred HHHHHHhhhcccccc
Q psy7342 323 KLIRRQNVIPWLGLW 337 (338)
Q Consensus 323 ~~a~~~~IlP~l~~~ 337 (338)
+-++++.++|+|+.+
T Consensus 158 k~M~~~~v~p~L~~~ 172 (396)
T PRK03673 158 KVMVEQEILPRLRER 172 (396)
T ss_pred HHHHHHHHHHHHHhh
Confidence 577888999999753
No 27
>PRK03670 competence damage-inducible protein A; Provisional
Probab=99.73 E-value=2.7e-17 Score=155.32 Aligned_cols=99 Identities=24% Similarity=0.269 Sum_probs=92.1
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCCh
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVT 278 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t 278 (338)
++++||++|||+..|++.|+|+++|+++|.+ +|+++....+|+||++.|+++|++++.+ .+|+||||||+|++++|+|
T Consensus 1 m~a~Ii~iGdEll~G~i~dtN~~~la~~L~~-~G~~v~~~~iV~Dd~~~I~~~l~~a~~~-~~DlVIttGGlGpt~dD~T 78 (252)
T PRK03670 1 MFAEIITVGDELLTGNTVDSNSAFIAQKLTE-KGYWVRRITTVGDDVEEIKSVVLEILSR-KPEVLVISGGLGPTHDDVT 78 (252)
T ss_pred CEEEEEEeCCcCcCCeEEehhHHHHHHHHHH-CCCEEEEEEEcCCCHHHHHHHHHHHhhC-CCCEEEECCCccCCCCCch
Confidence 5789999999999999999999999999999 9999999999999999999999998764 3799999999999999999
Q ss_pred HHHHHhccccccCChHHHHHH
Q psy7342 279 PEAMNHLIDKKVPCIEHIIQT 299 (338)
Q Consensus 279 ~eal~~l~~~~lpG~~e~~~~ 299 (338)
++++++.+++.+...++++.+
T Consensus 79 ~eava~a~g~~l~~~~e~~~~ 99 (252)
T PRK03670 79 MLAVAEALGRELVLCEDCLER 99 (252)
T ss_pred HHHHHHHhCCCCcCCHHHHHH
Confidence 999999999988888776543
No 28
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=99.67 E-value=2.7e-16 Score=148.40 Aligned_cols=98 Identities=22% Similarity=0.281 Sum_probs=92.8
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCCh
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVT 278 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t 278 (338)
.+++||++||||+.|++.|+|+.+|++.|.+ .|+++.+..+|+||+++|.++|+.+.++ +|+||+|||.|++++|+|
T Consensus 2 ~~a~iI~vG~ElL~G~ivdtNa~~la~~L~~-~G~~v~~~~~VgD~~~~I~~~l~~a~~r--~D~vI~tGGLGPT~DDiT 78 (255)
T COG1058 2 MKAEIIAVGDELLSGRIVDTNAAFLADELTE-LGVDLARITTVGDNPDRIVEALREASER--ADVVITTGGLGPTHDDLT 78 (255)
T ss_pred ceEEEEEEccceecCceecchHHHHHHHHHh-cCceEEEEEecCCCHHHHHHHHHHHHhC--CCEEEECCCcCCCccHhH
Confidence 5799999999999999999999999999999 9999999999999999999999999988 899999999999999999
Q ss_pred HHHHHhccccccCChHHHHHH
Q psy7342 279 PEAMNHLIDKKVPCIEHIIQT 299 (338)
Q Consensus 279 ~eal~~l~~~~lpG~~e~~~~ 299 (338)
.+++++.+.+.+.=.++++.+
T Consensus 79 ~e~vAka~g~~lv~~~~al~~ 99 (255)
T COG1058 79 AEAVAKALGRPLVLDEEALAM 99 (255)
T ss_pred HHHHHHHhCCCcccCHHHHHH
Confidence 999999999888766777654
No 29
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=86.89 E-value=1.7 Score=38.22 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=58.2
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRD 276 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D 276 (338)
++|||-+...|- .| .|.-...++.+|+. .||+|++.+...--.|.+.++ +++ ++|+|..|+ .+-+..+
T Consensus 11 ~rprvlvak~Gl---Dg--Hd~gakvia~~l~d-~GfeVi~~g~~~tp~e~v~aA----~~~-dv~vIgvSs-l~g~h~~ 78 (143)
T COG2185 11 ARPRVLVAKLGL---DG--HDRGAKVIARALAD-AGFEVINLGLFQTPEEAVRAA----VEE-DVDVIGVSS-LDGGHLT 78 (143)
T ss_pred CCceEEEeccCc---cc--cccchHHHHHHHHh-CCceEEecCCcCCHHHHHHHH----Hhc-CCCEEEEEe-ccchHHH
Confidence 689999999983 23 56778899999999 999999998866544444444 333 489999886 4556667
Q ss_pred ChHHHHHhcccc
Q psy7342 277 VTPEAMNHLIDK 288 (338)
Q Consensus 277 ~t~eal~~l~~~ 288 (338)
+.++.++.+-++
T Consensus 79 l~~~lve~lre~ 90 (143)
T COG2185 79 LVPGLVEALREA 90 (143)
T ss_pred HHHHHHHHHHHh
Confidence 777777666443
No 30
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=84.56 E-value=3.2 Score=37.78 Aligned_cols=63 Identities=14% Similarity=0.172 Sum_probs=46.4
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCC-CHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPD-EMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~D-d~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
..+++.+|+|...- ++.........+++ +|+++..+..+.+ +.+++.+.| .+ +|+|+.+||--
T Consensus 28 ~~~~i~~iptA~~~-----~~~~~~~~~~~~~~-lG~~~~~~~~~~~~~~~~~~~~l----~~--ad~I~~~GG~~ 91 (210)
T cd03129 28 AGARVLFIPTASGD-----RDEYGEEYRAAFER-LGVEVVHLLLIDTANDPDVVARL----LE--ADGIFVGGGNQ 91 (210)
T ss_pred CCCeEEEEeCCCCC-----hHHHHHHHHHHHHH-cCCceEEEeccCCCCCHHHHHHH----hh--CCEEEEcCCcH
Confidence 57999999998752 55667888899999 9999888877653 223333443 33 79999999863
No 31
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=83.28 E-value=2.9 Score=39.73 Aligned_cols=66 Identities=9% Similarity=0.142 Sum_probs=41.3
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
+.+||++|+|.+. .++.........+++ +|++.+..-.+.+-.++-...+.+.+.+ +|.|+.+||-
T Consensus 27 ~~~rI~~iptAS~-----~~~~~~~~~~~~~~~-lG~~~v~~l~i~~r~~a~~~~~~~~l~~--ad~I~~~GGn 92 (250)
T TIGR02069 27 EDAIIVIITSASE-----EPREVGERYITIFSR-LGVKEVKILDVREREDASDENAIALLSN--ATGIFFTGGD 92 (250)
T ss_pred CCceEEEEeCCCC-----ChHHHHHHHHHHHHH-cCCceeEEEecCChHHccCHHHHHHHhh--CCEEEEeCCC
Confidence 4589999999764 233345567778889 9996444444433222222233344544 7999999986
No 32
>PF07697 7TMR-HDED: 7TM-HD extracellular; InterPro: IPR011624 This entry represents the extracellular domain of the 7TM-HD (7TM Receptors with HD hydrolase) protein family []. These proteins are known or predicted, to posses metal-dependent phospohydrolase activity.
Probab=82.88 E-value=0.88 Score=41.09 Aligned_cols=29 Identities=3% Similarity=-0.019 Sum_probs=27.1
Q ss_pred c-ccCCCcccCCCceeChhcHHHHHhhCCCc
Q psy7342 162 E-WTEKSQQYSTTQVIRPDTNHAQRCSTSMK 191 (338)
Q Consensus 162 G-i~~Ge~ll~~G~~l~p~~i~~lLas~Gi~ 191 (338)
| +++|++|+++|++++|.++ ..|.++|.-
T Consensus 191 ~~V~~Ge~IV~kGe~VT~e~~-~~L~~l~~~ 220 (222)
T PF07697_consen 191 GMVKKGEVIVRKGEIVTEEQY-EKLESLGLL 220 (222)
T ss_pred hhccCCCEEecCCcEeCHHHH-HHHHHcCCc
Confidence 5 9999999999999999999 999999864
No 33
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=80.57 E-value=5.4 Score=34.83 Aligned_cols=72 Identities=14% Similarity=0.030 Sum_probs=51.1
Q ss_pred ceEEEEecCCCccCCeeecCc----HHHHHHHHHccc--CCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 199 TCHLLALVSDRCFNKESEDKS----GPLLAQLLQEDF--QHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN----~~~L~~lL~~~~--G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
|.+.|+..||.+..|.-.+.. ...+...|.+.. ++++...++-.+.-..+.+.+.+... ..+|+|+...|+=
T Consensus 1 ~~~~i~~~GDSit~G~g~~~~~~~~~~~l~~~l~~~~~~~~~~~n~g~~G~t~~~~~~~l~~~~~-~~pd~Vii~~G~N 78 (191)
T cd01836 1 PPLRLLVLGDSTAAGVGVETQDQALAGQLARGLAAITGRGVRWRLFAKTGATSADLLRQLAPLPE-TRFDVAVISIGVN 78 (191)
T ss_pred CCeEEEEEeccccccccccchhccHHHHHHHHHHHhhCCceEEEEEecCCcCHHHHHHHHHhccc-CCCCEEEEEeccc
Confidence 445678889999987432221 234666666522 67889999999999888888887333 3589999888774
No 34
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=80.47 E-value=3.3 Score=38.00 Aligned_cols=60 Identities=10% Similarity=0.066 Sum_probs=43.0
Q ss_pred ecCceEEEEecCCCccCCeeecCcHHHHHHHHHccc-CCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 196 VRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDF-QHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 196 ~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~-G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
.+++++++|+|... .++.........+++ . |+++....... .+.+.+.+.+ +|+|+.+||
T Consensus 29 ~~~~~i~~IptAs~-----~~~~~~~~~~~a~~~-l~G~~~~~~~~~~------~~~~~~~l~~--ad~I~l~GG 89 (212)
T cd03146 29 KARPKVLFVPTASG-----DRDEYTARFYAAFES-LRGVEVSHLHLFD------TEDPLDALLE--ADVIYVGGG 89 (212)
T ss_pred cCCCeEEEECCCCC-----CHHHHHHHHHHHHhh-ccCcEEEEEeccC------cccHHHHHhc--CCEEEECCc
Confidence 46799999999876 244556677888999 9 99888776654 2222333334 799999997
No 35
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=79.87 E-value=4.9 Score=42.77 Aligned_cols=88 Identities=5% Similarity=-0.173 Sum_probs=66.8
Q ss_pred hcHHHHHhhCCCceeEeec-CceEEEEecCCCccCCee-ecCcHHHHHHHHHcccCCEEEEEEEcCC-----------CH
Q psy7342 179 DTNHAQRCSTSMKYWELVR-STCHLLALVSDRCFNKES-EDKSGPLLAQLLQEDFQHAHILKTCVPD-----------EM 245 (338)
Q Consensus 179 ~~i~~lLas~Gi~~v~V~~-~prVaIIstGdEl~~G~i-~DsN~~~L~~lL~~~~G~~v~~~~iV~D-----------d~ 245 (338)
.+- ++|.+.|+++-. ++ ||.|+|+.+.+|+.++.. .+.-...++.-+++ .|.....+.++.+ .+
T Consensus 20 ~~r-a~l~a~G~~~ed-~~~kP~IgI~ns~se~~Pch~hl~~l~~~vk~gi~~-aGg~p~ef~ti~v~Dgi~~g~sL~sR 96 (571)
T PRK06131 20 YHR-SFMKNQGYPDEL-FDGRPIIGICNTWSDLNPCNAHFRQLAERVKRGVLE-AGGFPVEFPVISLGESFLRPTAMLYR 96 (571)
T ss_pred HHH-HHHHHcCCChHH-hccCCEEEEecccccCcCchhhHHHHHHHHHHHHHH-cCCEEEecCccCccccccCccccccH
Confidence 344 899999999987 56 999999999999998744 45556677777777 8876655554432 47
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 246 EEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 246 e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
|.|...++..+..+.+|-+|..||
T Consensus 97 elIAdsiE~~~~a~~~Dg~v~i~~ 120 (571)
T PRK06131 97 NLAAMDVEEMIRGYPIDGVVLLGG 120 (571)
T ss_pred HHHHHHHHHHHhcCCcceEEEEee
Confidence 888888888887766787776665
No 36
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=79.20 E-value=6.6 Score=36.93 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=50.1
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
+++|+.|+|.+-... .|---......|++ .|+.+....+..++.+.|++.|.+ .|+|...||-
T Consensus 32 ~~~i~FIPtAs~~~~---~~~Yv~k~~~~l~~-lg~~v~~L~l~~~~~~~Ie~~l~~------~d~IyVgGGN 94 (224)
T COG3340 32 RKTIAFIPTASVDSE---DDFYVEKVRNALAK-LGLEVSELHLSKPPLAAIENKLMK------ADIIYVGGGN 94 (224)
T ss_pred CceEEEEecCccccc---hHHHHHHHHHHHHH-cCCeeeeeeccCCCHHHHHHhhhh------ccEEEECCch
Confidence 679999998764321 12233455678999 999999999999999999998876 5999999994
No 37
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=78.44 E-value=5.6 Score=34.96 Aligned_cols=52 Identities=17% Similarity=0.068 Sum_probs=43.2
Q ss_pred HHHHHHHcccCCEEEEEEE---cCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 222 LLAQLLQEDFQHAHILKTC---VPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 222 ~L~~lL~~~~G~~v~~~~i---V~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
.|...|++ .|+++.+++. -+.|.-.+...+.+.+.++.+|.-|..-|||+|-
T Consensus 15 ~l~~~L~~-~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~ 69 (144)
T TIGR00689 15 EIIEHLKQ-KGHEVIDCGTLYDERVDYPDYAKLVADKVVAGEVSLGILICGTGIGM 69 (144)
T ss_pred HHHHHHHH-CCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCcHHH
Confidence 45667888 9999999987 3457888888888888777799999999999885
No 38
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=77.72 E-value=4.9 Score=35.09 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=43.4
Q ss_pred HHHHHHHHcccCCEEEEEEEcC---CCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 221 PLLAQLLQEDFQHAHILKTCVP---DEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~iV~---Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
..|.+.|++ .|+++.+++.-. .|.-.+...+.+.+.+..+|.-|+.-|||+|-
T Consensus 15 ~~i~~~L~~-~g~eV~D~G~~~~~~~dy~~~a~~va~~V~~~~~d~GIliCgtGiG~ 70 (140)
T PF02502_consen 15 EAIKEYLEE-KGYEVIDFGTYSEDSVDYPDFAEKVAEAVASGEADRGILICGTGIGM 70 (140)
T ss_dssp HHHHHHHHH-TTEEEEEESESSTST--HHHHHHHHHHHHHTTSSSEEEEEESSSHHH
T ss_pred HHHHHHHHH-CCCEEEEeCCCCCCCCCHHHHHHHHHHHHHcccCCeEEEEcCCChhh
Confidence 356678888 999999999877 67788888888888877799999999999874
No 39
>KOG2644|consensus
Probab=77.48 E-value=0.44 Score=46.17 Aligned_cols=84 Identities=21% Similarity=0.266 Sum_probs=72.5
Q ss_pred EEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHH
Q psy7342 201 HLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPE 280 (338)
Q Consensus 201 VaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~e 280 (338)
-++..++..+..|.+.|+|.......+.. .|.++....+++||..++.+...++..+ .+.|+++||.+....|++.|
T Consensus 7 s~~~li~~~~~~~~~~~t~~sf~~~~~~~-~~~~~~s~~~~~~d~~q~~~~~~~l~~~--~e~i~~a~~i~~~~~~i~~E 83 (282)
T KOG2644|consen 7 SAIFLINRFLANGSTEDTNSSFKGLHLST-SGVQLKSINIVDDDAAQILDEVLRLTRQ--LEFILKAGGIGPTHDDITQE 83 (282)
T ss_pred hHHHHHHhhhcccceeeeeeecccccccc-ccccceeeecccchHHHHHHHHHHHHHH--HHHHHHhhccCCccchhhHH
Confidence 34445666777888999999999999999 9999999999999999988888888876 69999999999999999988
Q ss_pred HHHhccc
Q psy7342 281 AMNHLID 287 (338)
Q Consensus 281 al~~l~~ 287 (338)
.+..-+.
T Consensus 84 ~~a~SFn 90 (282)
T KOG2644|consen 84 EMALSFN 90 (282)
T ss_pred HHHHhhC
Confidence 8887654
No 40
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=77.18 E-value=6.5 Score=34.69 Aligned_cols=53 Identities=17% Similarity=0.008 Sum_probs=43.9
Q ss_pred HHHHHHHHcccCCEEEEEEE----cCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 221 PLLAQLLQEDFQHAHILKTC----VPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~i----V~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
..|...|++ .|+++..++. -+||+-.+...+.+.+.++.+|.-|..-|||+|-
T Consensus 16 ~~l~~~L~~-~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~ 72 (148)
T TIGR02133 16 EALWLDLAA-HEPEVCDVGVYDADDDDDYPCFCIAAAEAVARDAADLGIVIGGSGNGE 72 (148)
T ss_pred HHHHHHHHH-CCCEEEECCCCCCCCCCCchHHHHHHHHHHhcCCCceEEEEcCCChhh
Confidence 345667888 9999999996 2467888999999988777799999999999986
No 41
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=76.97 E-value=6.1 Score=36.44 Aligned_cols=66 Identities=9% Similarity=0.123 Sum_probs=42.4
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
+.++|.+|+|...- .+.........+++ +|+.....-.+.+..+.=...+.+.+.+ +|+|+.+||-
T Consensus 28 ~~~~i~~iptA~~~-----~~~~~~~~~~~~~~-lG~~~v~~~~~~~~~~a~~~~~~~~l~~--ad~I~~~GG~ 93 (217)
T cd03145 28 AGARIVVIPAASEE-----PAEVGEEYRDVFER-LGAREVEVLVIDSREAANDPEVVARLRD--ADGIFFTGGD 93 (217)
T ss_pred CCCcEEEEeCCCcC-----hhHHHHHHHHHHHH-cCCceeEEeccCChHHcCCHHHHHHHHh--CCEEEEeCCc
Confidence 56999999998642 35556778888899 9987555555543111111222333444 7999999985
No 42
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=76.38 E-value=7.8 Score=34.01 Aligned_cols=52 Identities=19% Similarity=0.130 Sum_probs=43.9
Q ss_pred HHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 222 LLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 222 ~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
.|...|++ .|+++.+++.-+.|.-.+...+.+.+.+..+|.=|..-|||+|-
T Consensus 17 ~l~~~L~~-~g~eV~D~G~~~~dypd~a~~va~~V~~~e~~~GIliCGtGiG~ 68 (141)
T PRK12613 17 LIKSFLQE-EGYDIIDVTDINSDFIDNTLAVAKAVNEAEGRLGIMVDAYGAGP 68 (141)
T ss_pred HHHHHHHH-CCCEEEEcCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCCHhH
Confidence 45567888 99999999976678888999999988777799999999999885
No 43
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=75.46 E-value=11 Score=35.49 Aligned_cols=45 Identities=20% Similarity=0.142 Sum_probs=34.5
Q ss_pred HHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 221 PLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
.-+...-++ .|.++....-++ +.+...+.|+++.++ ++|+||++|
T Consensus 21 ~G~~~~~~~-~gv~~~~~e~~~-~~~~~~~~i~~~~~~-g~dlIi~~g 65 (258)
T cd06353 21 EGRKAAEKA-LGVEVTYVENVP-EGADAERVLRELAAQ-GYDLIFGTS 65 (258)
T ss_pred HHHHHHHHh-cCCeEEEEecCC-chHhHHHHHHHHHHc-CCCEEEECc
Confidence 344455566 888888877665 678899999998886 599999955
No 44
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=75.45 E-value=8.4 Score=34.23 Aligned_cols=53 Identities=17% Similarity=0.081 Sum_probs=41.3
Q ss_pred HHHHHHHHcccCCEEEEEEEc----CCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 221 PLLAQLLQEDFQHAHILKTCV----PDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~iV----~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
..+...|++ .|+++..++.. +.|.-.+...+...+....+|+.|+..|||.|.
T Consensus 16 ~~I~~~Lk~-~g~~v~D~G~~~~~~~~dyp~~a~~va~~v~~~~~d~GIliCGTGiG~ 72 (151)
T COG0698 16 EIIIDHLKS-KGYEVIDFGTYTDEGSVDYPDYAKKVAEAVLNGEADLGILICGTGIGM 72 (151)
T ss_pred HHHHHHHHH-CCCEEEeccccCCCCCcchHHHHHHHHHHHHcCCCCeeEEEecCChhH
Confidence 355677888 99999997654 456677777777777554589999999999996
No 45
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=74.88 E-value=8.6 Score=33.18 Aligned_cols=79 Identities=16% Similarity=0.126 Sum_probs=51.3
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRD 276 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D 276 (338)
++++|-+.+.+.| ..|-...+++.+|+. .|+++++.+.--- ++++.+++.+ .++|+|..|--.+. ...
T Consensus 2 ~~~~vl~~~~~gD-----~H~lG~~iv~~~lr~-~G~eVi~LG~~vp-~e~i~~~a~~----~~~d~V~lS~~~~~-~~~ 69 (137)
T PRK02261 2 KKKTVVLGVIGAD-----CHAVGNKILDRALTE-AGFEVINLGVMTS-QEEFIDAAIE----TDADAILVSSLYGH-GEI 69 (137)
T ss_pred CCCEEEEEeCCCC-----hhHHHHHHHHHHHHH-CCCEEEECCCCCC-HHHHHHHHHH----cCCCEEEEcCcccc-CHH
Confidence 5677777776655 467777888999999 9999999986222 3444444433 35899998765552 223
Q ss_pred ChHHHHHhccc
Q psy7342 277 VTPEAMNHLID 287 (338)
Q Consensus 277 ~t~eal~~l~~ 287 (338)
.+++.++.+-+
T Consensus 70 ~~~~~~~~L~~ 80 (137)
T PRK02261 70 DCRGLREKCIE 80 (137)
T ss_pred HHHHHHHHHHh
Confidence 34555544433
No 46
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=74.62 E-value=9.6 Score=32.70 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=51.1
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRD 276 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D 276 (338)
++||+-+-++|. ...|.-..++..+|+. .||+|++.+.-. .++++.++.. ++ ++|+|..|+=.+ +..+
T Consensus 1 ~~~~v~~a~~g~-----D~Hd~g~~iv~~~l~~-~GfeVi~lg~~~-s~e~~v~aa~---e~-~adii~iSsl~~-~~~~ 68 (132)
T TIGR00640 1 RRPRILVAKMGQ-----DGHDRGAKVIATAYAD-LGFDVDVGPLFQ-TPEEIARQAV---EA-DVHVVGVSSLAG-GHLT 68 (132)
T ss_pred CCCEEEEEeeCC-----CccHHHHHHHHHHHHh-CCcEEEECCCCC-CHHHHHHHHH---Hc-CCCEEEEcCchh-hhHH
Confidence 468888888775 4577788899999999 999999998753 3444433333 33 589999877332 1223
Q ss_pred ChHHHHHhc
Q psy7342 277 VTPEAMNHL 285 (338)
Q Consensus 277 ~t~eal~~l 285 (338)
.+++.++.+
T Consensus 69 ~~~~~~~~L 77 (132)
T TIGR00640 69 LVPALRKEL 77 (132)
T ss_pred HHHHHHHHH
Confidence 345555444
No 47
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=74.21 E-value=14 Score=31.53 Aligned_cols=70 Identities=17% Similarity=0.087 Sum_probs=49.0
Q ss_pred EEEecCCCccCCeee---cCcHHHHHHHHHcc-cCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 202 LLALVSDRCFNKESE---DKSGPLLAQLLQED-FQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 202 aIIstGdEl~~G~i~---DsN~~~L~~lL~~~-~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
.|+..||.+..|.-. ++-...+++.|++. .++++...++-.+....+.+.+.+.+...++|+|+...|+=
T Consensus 2 ~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~pd~v~i~~G~N 75 (177)
T cd01822 2 TILALGDSLTAGYGLPPEEGWPALLQKRLDARGIDVTVINAGVSGDTTAGGLARLPALLAQHKPDLVILELGGN 75 (177)
T ss_pred eEEEEccccccCcCCCCCCchHHHHHHHHHHhCCCeEEEecCcCCcccHHHHHHHHHHHHhcCCCEEEEeccCc
Confidence 467789999877432 22234566666541 46788999998888777777777776655689999888764
No 48
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=73.01 E-value=13 Score=39.63 Aligned_cols=96 Identities=5% Similarity=-0.081 Sum_probs=66.8
Q ss_pred CCceeCh-hcHHHHHhhCCCceeEeecCceEEEEecCCCccCCee-ecCcHHHHHHHHHcccCCEEEEEEEcC--C----
Q psy7342 172 TTQVIRP-DTNHAQRCSTSMKYWELVRSTCHLLALVSDRCFNKES-EDKSGPLLAQLLQEDFQHAHILKTCVP--D---- 243 (338)
Q Consensus 172 ~G~~l~p-~~i~~lLas~Gi~~v~V~~~prVaIIstGdEl~~G~i-~DsN~~~L~~lL~~~~G~~v~~~~iV~--D---- 243 (338)
.|....+ .+- ++|.+.|+++-..-.||.|+|+.+-+|+.++.. .+.-...++.-+++ .|.....+.++. |
T Consensus 16 ~g~~~~~~~~r-a~l~a~G~~~~d~~~KP~IgI~ns~se~~Pch~hL~~la~~Vk~gv~~-aGG~P~ef~ti~v~Dgi~~ 93 (577)
T PRK13016 16 GPDDLRSFGHR-SRMMQMGYAPEDFDGKPVIAILNTWSDANPCHGHFRERVEDVKRGVLQ-AGGFPLELPALSLSENFVK 93 (577)
T ss_pred CCccccchHHH-HHHHHcCCCHHHHhcCCEEEEEecccCCcCchhhHHHHHHHHHHHHHH-cCCeeEecccccCcccccC
Confidence 3444432 445 899999999887327999999999999988743 34455566666777 776655443322 1
Q ss_pred -----CHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 244 -----EMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 244 -----d~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
.+|.|...++..+..+.+|-+|..+|
T Consensus 94 g~sl~~RelIAdsiE~~~~a~~~Dg~V~l~~ 124 (577)
T PRK13016 94 PTTMLYRNLLAMETEELIRSHPVDGAVLMGG 124 (577)
T ss_pred CcccccHHHHHHHHHHHHhcCCccceEEecc
Confidence 36778888888877666787777765
No 49
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=72.58 E-value=13 Score=39.68 Aligned_cols=89 Identities=8% Similarity=-0.122 Sum_probs=64.5
Q ss_pred hcHHHHHhhCCCceeEee-cCceEEEEecCCCccCCee-ecCcHHHHHHHHHcccCCEEEEEEEcC-----------CCH
Q psy7342 179 DTNHAQRCSTSMKYWELV-RSTCHLLALVSDRCFNKES-EDKSGPLLAQLLQEDFQHAHILKTCVP-----------DEM 245 (338)
Q Consensus 179 ~~i~~lLas~Gi~~v~V~-~~prVaIIstGdEl~~G~i-~DsN~~~L~~lL~~~~G~~v~~~~iV~-----------Dd~ 245 (338)
.+- +++.+.|+++=... .+|.|+|+.+.+|+.++.. .+.-+..++.-+.+ .|.....+.++. -.+
T Consensus 28 ~~r-a~~~a~G~~~ed~~~~KP~IgI~ns~se~~Pch~hl~~la~~vk~gI~~-aGG~p~ef~ti~v~d~~~~~~~l~sR 105 (596)
T PRK13017 28 LYL-ERYMNYGLTREELQSGKPIIGIAQTGSDLSPCNRHHLELAERVKEGIRD-AGGIPMEFPVHPIQETGKRPTAALDR 105 (596)
T ss_pred HHH-HHHHHcCCChHHhccCCCEEEEEecccCCcCchhhHHHHHHHHHHHHHH-cCCeeEecccccccccCCCcccccCH
Confidence 566 89999999988743 7999999999999998743 34445566666777 776555444332 246
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 246 EEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 246 e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
|.|...++..+..+.+|-+|..||
T Consensus 106 elIAd~iE~~~~a~~~Dg~V~i~g 129 (596)
T PRK13017 106 NLAYLGLVEILYGYPLDGVVLTTG 129 (596)
T ss_pred HHHHHHHHHHHhcCCcceEEEecc
Confidence 778888888887666787766664
No 50
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=72.55 E-value=11 Score=33.00 Aligned_cols=52 Identities=19% Similarity=0.086 Sum_probs=41.0
Q ss_pred HHHHHHHcccCCEEEEEEEc---CCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 222 LLAQLLQEDFQHAHILKTCV---PDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 222 ~L~~lL~~~~G~~v~~~~iV---~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
.|.+.|++ .|+++.+++.. +-|.-.+...+.+.+.++.+|.-|..-|||+|-
T Consensus 16 ~l~~~L~~-~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~ 70 (143)
T TIGR01120 16 EIKAFLVE-RGVKVIDKGTWSSERTDYPHYAKQVALAVAGGEVDGGILICGTGIGM 70 (143)
T ss_pred HHHHHHHH-CCCEEEEeCCCCCCCCCHHHHHHHHHHHHHCCCCceEEEEcCCcHHH
Confidence 44556788 99999999863 235777888888888776799999999999985
No 51
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=71.46 E-value=7.6 Score=33.63 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=30.0
Q ss_pred HHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 223 LAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 223 L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
..+.+++ +|+++....+...+.+.+.+.|++ +|+|..+||-
T Consensus 5 ~~~~f~~-~g~~v~~l~~~~~~~~~~~~~i~~------ad~I~~~GG~ 45 (154)
T PF03575_consen 5 FRKAFRK-LGFEVDQLDLSDRNDADILEAIRE------ADAIFLGGGD 45 (154)
T ss_dssp HHHHHHH-CT-EEEECCCTSCGHHHHHHHHHH------SSEEEE--S-
T ss_pred HHHHHHH-CCCEEEEEeccCCChHHHHHHHHh------CCEEEECCCC
Confidence 5678899 999988888888777766666654 6999999984
No 52
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=71.27 E-value=11 Score=34.11 Aligned_cols=52 Identities=15% Similarity=0.047 Sum_probs=42.0
Q ss_pred HHHHHHHcccCCEEEEEEEc---CCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 222 LLAQLLQEDFQHAHILKTCV---PDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 222 ~L~~lL~~~~G~~v~~~~iV---~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
.|...|++ .|+++..++.- +.|.-.+...+.+++.++.+|.-|..-|||+|-
T Consensus 17 ~l~~~L~~-~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGTGiG~ 71 (171)
T TIGR01119 17 EVSEFLKS-KGYEVLDVGTYDFTRTHYPIFGKKVGEAVVSGEADLGVCICGTGVGI 71 (171)
T ss_pred HHHHHHHH-CCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCCcHHH
Confidence 44567788 99999999862 346778888888888776799999999999885
No 53
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=71.07 E-value=11 Score=34.03 Aligned_cols=52 Identities=19% Similarity=0.116 Sum_probs=42.4
Q ss_pred HHHHHHHcccCCEEEEEEEc---CCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 222 LLAQLLQEDFQHAHILKTCV---PDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 222 ~L~~lL~~~~G~~v~~~~iV---~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
.|.+.|++ .|++|..++.- +.|.-.+...+.+++.+..+|.-|..-|||+|-
T Consensus 17 ~l~~~L~~-~G~eV~D~G~~~~e~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~ 71 (171)
T PRK08622 17 AVSDYLKS-KGHEVIDVGTYDFTRTHYPIFGKKVGEAVASGEADLGVCICGTGVGI 71 (171)
T ss_pred HHHHHHHH-CCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCcEEEEEcCCcHHH
Confidence 45567777 89999999973 446778888888888776799999999999885
No 54
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=70.28 E-value=13 Score=32.75 Aligned_cols=52 Identities=19% Similarity=0.105 Sum_probs=42.3
Q ss_pred HHHHHHHcccCCEEEEEEEc----CCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 222 LLAQLLQEDFQHAHILKTCV----PDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 222 ~L~~lL~~~~G~~v~~~~iV----~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
.|...|++ .|+++.+++.- +.|.-.+...+.+.+.++.+|.=|..-|||+|-
T Consensus 17 ~l~~~L~~-~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~ 72 (148)
T PRK05571 17 EIIEHLEE-LGHEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILICGTGIGM 72 (148)
T ss_pred HHHHHHHH-CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHH
Confidence 44567788 89999999862 457778888888888777799999999999885
No 55
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=70.19 E-value=14 Score=35.85 Aligned_cols=75 Identities=13% Similarity=0.074 Sum_probs=50.4
Q ss_pred cCceEEEEecCCCcc---------CCee------ecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCC
Q psy7342 197 RSTCHLLALVSDRCF---------NKES------EDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKV 261 (338)
Q Consensus 197 ~~prVaIIstGdEl~---------~G~i------~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~ 261 (338)
+++|++|+.+|.-=. .|+. .=+|.+-+..+.++ +|+.+.....-.+++++..+.+.+++.+.++
T Consensus 83 ~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~visn~~~~~~~A~~-~gIp~~~~~~~~~~~~~~e~~~~~~l~~~~~ 161 (280)
T TIGR00655 83 KLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVISNHEDLRSLVER-FGIPFHYIPATKDNRVEHEKRQLELLKQYQV 161 (280)
T ss_pred CCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHH-hCCCEEEcCCCCcchhhhHHHHHHHHHHhCC
Confidence 468999999986521 2322 22566677778888 9998766554344556666666666666679
Q ss_pred cEEEEeCCccC
Q psy7342 262 DLIFTSGGTGM 272 (338)
Q Consensus 262 DlVITTGGts~ 272 (338)
|+|+..|=.-.
T Consensus 162 Dlivlagym~i 172 (280)
T TIGR00655 162 DLVVLAKYMQI 172 (280)
T ss_pred CEEEEeCchhh
Confidence 99999984444
No 56
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=70.18 E-value=12 Score=33.89 Aligned_cols=52 Identities=17% Similarity=0.056 Sum_probs=42.2
Q ss_pred HHHHHHHcccCCEEEEEEEc---CCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 222 LLAQLLQEDFQHAHILKTCV---PDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 222 ~L~~lL~~~~G~~v~~~~iV---~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
.|...|++ .|+++..++.- +.|.-.+...+.+++.++.+|.-|...|||+|-
T Consensus 17 ~l~~~L~~-~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~ 71 (171)
T PRK12615 17 AVSDFLKS-KGYDVIDCGTYDHTRTHYPIFGKKVGEAVVNGQADLGVCICGTGVGI 71 (171)
T ss_pred HHHHHHHH-CCCEEEEcCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCCcHHH
Confidence 45667888 99999998863 446777888888888776799999999999885
No 57
>PRK09273 hypothetical protein; Provisional
Probab=67.08 E-value=12 Score=34.99 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=41.9
Q ss_pred HHHHHHHcccCCEEEEEEEcC-----CCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 222 LLAQLLQEDFQHAHILKTCVP-----DEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 222 ~L~~lL~~~~G~~v~~~~iV~-----Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
.|...|++ .|+++.+++.-. -|.-.+...+...+.+..+|..|+.-|||.|-
T Consensus 21 ~L~~~L~~-~G~eV~D~G~~~~~~~s~dYpd~a~~vA~~V~~g~~d~GIliCGTGiG~ 77 (211)
T PRK09273 21 ALKKVADP-KGHEVFNYGMYDEEDHQLTYVQNGIMASILLNSKAVDFVVTGCGTGQGA 77 (211)
T ss_pred HHHHHHHH-CCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCcHHHH
Confidence 45566788 999999999743 25667788888888776799999999999985
No 58
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=66.68 E-value=19 Score=30.59 Aligned_cols=66 Identities=21% Similarity=0.249 Sum_probs=49.1
Q ss_pred ecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhcc
Q psy7342 216 EDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLI 286 (338)
Q Consensus 216 ~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l~ 286 (338)
.||-.+-...++++ .|..+.... ..|.-.++.+|+.+.+. +++-|+..|++| |.-|++--.+.-+.
T Consensus 44 fDSi~~~~~~~~~~-~~~~~~~~p--~kD~TD~e~Al~~~~~~-~~~~i~v~Ga~G-gR~DH~lanl~~l~ 109 (123)
T PF04263_consen 44 FDSISPEVLEFYKS-KGVEIIHFP--EKDYTDLEKALEYAIEQ-GPDEIIVLGALG-GRFDHTLANLNLLY 109 (123)
T ss_dssp SSSS-HHHHHHHHH-CTTEEEEE---STTS-HHHHHHHHHHHT-TTSEEEEES-SS-SSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHh-hccceeccc--ccccCHHHHHHHHHHHC-CCCEEEEEecCC-CcHHHHHHHHHHHH
Confidence 48999999999999 999988776 44455677788877665 589999999999 79998876665543
No 59
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=66.10 E-value=28 Score=32.93 Aligned_cols=85 Identities=12% Similarity=0.018 Sum_probs=61.9
Q ss_pred HHHhhCCCceeEeecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEE---------EcCCCHHHHHHHHH
Q psy7342 183 AQRCSTSMKYWELVRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKT---------CVPDEMEEIKDKLK 253 (338)
Q Consensus 183 ~lLas~Gi~~v~V~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~---------iV~Dd~e~I~~aL~ 253 (338)
..|...|+++|. |++ .+.+.-...+.+.+++ .|+++.... +-.=+++.+.+.+.
T Consensus 113 ~AL~alg~~RIa--------lvT--------PY~~~v~~~~~~~l~~-~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~ 175 (239)
T TIGR02990 113 DGLAALGVRRIS--------LLT--------PYTPETSRPMAQYFAV-RGFEIVNFTCLGLTDDREMARISPDCIVEAAL 175 (239)
T ss_pred HHHHHcCCCEEE--------EEC--------CCcHHHHHHHHHHHHh-CCcEEeeeeccCCCCCceeeecCHHHHHHHHH
Confidence 667777777664 444 2455666778889999 999998773 33346888998888
Q ss_pred HHHhCCCCcEEEEeCCccCCCCCChHHHHHhcc
Q psy7342 254 YWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLI 286 (338)
Q Consensus 254 ~a~~~~~~DlVITTGGts~G~~D~t~eal~~l~ 286 (338)
+... .++|.|+.+ +|.+---|++++.=++++
T Consensus 176 ~~~~-~~aDAifis-CTnLrt~~vi~~lE~~lG 206 (239)
T TIGR02990 176 AAFD-PDADALFLS-CTALRAATCAQRIEQAIG 206 (239)
T ss_pred HhcC-CCCCEEEEe-CCCchhHHHHHHHHHHHC
Confidence 7744 469999999 899988888777655543
No 60
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=65.99 E-value=15 Score=34.69 Aligned_cols=61 Identities=15% Similarity=0.091 Sum_probs=39.6
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
+.++|++|+|.... .-++.-.......+++ .|+++...... + ... +.+.+ +|+|+.+||-.
T Consensus 30 ~~~~v~fIPtAs~~---~~~~~y~~~~~~af~~-lG~~v~~l~~~-~---d~~----~~l~~--ad~I~v~GGnt 90 (233)
T PRK05282 30 GRRKAVFIPYAGVT---QSWDDYTAKVAEALAP-LGIEVTGIHRV-A---DPV----AAIEN--AEAIFVGGGNT 90 (233)
T ss_pred CCCeEEEECCCCCC---CCHHHHHHHHHHHHHH-CCCEEEEeccc-h---hhH----HHHhc--CCEEEECCccH
Confidence 67999999997632 1112222457788888 99997765432 2 222 34444 79999999954
No 61
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=65.94 E-value=25 Score=30.35 Aligned_cols=68 Identities=13% Similarity=0.058 Sum_probs=45.7
Q ss_pred EEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 203 LALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 203 IIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
|+..||.+..|--......+...+-.. .+..++..++-.+....+.+.+++.+...++|+|+...|+=
T Consensus 3 i~~~GDSi~~g~~~~~~~~~~~~l~~~-~~~~v~n~g~~G~~~~~~l~~l~~~~~~~~~d~v~i~~G~N 70 (183)
T cd04501 3 VVCLGDSITYGYPVGPEASWVNLLAEF-LGKEVINRGINGDTTSQMLVRFYEDVIALKPAVVIIMGGTN 70 (183)
T ss_pred EEEEccccccCcCCCCcchHHHHHHhh-cCCeEEecCcCCccHHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 677899998764332222233333334 77889999998888777777777655444689998887653
No 62
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=65.19 E-value=19 Score=35.07 Aligned_cols=76 Identities=9% Similarity=0.037 Sum_probs=50.5
Q ss_pred cCceEEEEecCCCcc---------CC----ee--ecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCC
Q psy7342 197 RSTCHLLALVSDRCF---------NK----ES--EDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKV 261 (338)
Q Consensus 197 ~~prVaIIstGdEl~---------~G----~i--~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~ 261 (338)
+++|++|+.+|+-=. .| ++ .=||.+-+..+.++ +|+.+.....-+++.++..+.+.+++.+.++
T Consensus 92 ~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~~~~~~~A~~-~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (289)
T PRK13010 92 QRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHPDLQPLAVQ-HDIPFHHLPVTPDTKAQQEAQILDLIETSGA 170 (289)
T ss_pred CCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECChhHHHHHHH-cCCCEEEeCCCcccccchHHHHHHHHHHhCC
Confidence 578999999986310 22 22 22455556788888 9998776655556666556666666665679
Q ss_pred cEEEEeCCccCC
Q psy7342 262 DLIFTSGGTGMS 273 (338)
Q Consensus 262 DlVITTGGts~G 273 (338)
|+|+..|=.-.=
T Consensus 171 Dlivlagym~il 182 (289)
T PRK13010 171 ELVVLARYMQVL 182 (289)
T ss_pred CEEEEehhhhhC
Confidence 999999844443
No 63
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=64.94 E-value=23 Score=31.77 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=38.1
Q ss_pred ecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc-CCCCCChHHHHHhc
Q psy7342 216 EDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG-MSPRDVTPEAMNHL 285 (338)
Q Consensus 216 ~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts-~G~~D~t~eal~~l 285 (338)
+||-...+..+|++ .|+++. +++.+...+ +.+.+ .++|.||.+||-| +.+.....+.++.+
T Consensus 8 ~dsft~~~~~~l~~-~g~~v~---v~~~~~~~~-~~~~~----~~~d~iilsgGpg~p~~~~~~~~~i~~~ 69 (188)
T TIGR00566 8 YDSFTYNLVQYFCE-LGAEVV---VKRNDSLTL-QEIEA----LLPLLIVISPGPCTPNEAGISLEAIRHF 69 (188)
T ss_pred CcCHHHHHHHHHHH-cCCceE---EEECCCCCH-HHHHh----cCCCEEEEcCCCCChhhcchhHHHHHHh
Confidence 58889999999999 998875 445332112 12222 1379888899984 44333444555554
No 64
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=63.48 E-value=22 Score=31.29 Aligned_cols=52 Identities=12% Similarity=0.074 Sum_probs=40.6
Q ss_pred HHHHHHHcccCCEEEEEEE-cCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 222 LLAQLLQEDFQHAHILKTC-VPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 222 ~L~~lL~~~~G~~v~~~~i-V~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
.|.+.|++ .|+++.+++. -+.|.-.+...+.+.+.++.+|.=|..-|||+|-
T Consensus 17 ~l~~~L~~-~G~eV~D~G~~~~~dYpd~a~~va~~V~~~~~~~GIliCGTGiG~ 69 (142)
T PRK08621 17 VVKDYLED-NKYEVVDVTEEGAEDFVDSTLAVAKEVNKSEDNLGIVIDAYGAGS 69 (142)
T ss_pred HHHHHHHH-CCCEEEECCCCCCCCcHHHHHHHHHHHHcCCCceEEEEcCCChhh
Confidence 45567888 9999999987 2236777888888888766689888889999885
No 65
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=63.35 E-value=23 Score=32.87 Aligned_cols=80 Identities=18% Similarity=0.150 Sum_probs=56.7
Q ss_pred EEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHH
Q psy7342 202 LLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEA 281 (338)
Q Consensus 202 aIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~ea 281 (338)
.|+.||=+-+.|...|.+...+..+-.+..+..-+...++|=+.+...+.+.+++++...|+||..|=.+ |.+.++.|-
T Consensus 3 ~ILvTGF~PF~~~~~NPS~~~~~~L~~~~~~~~~v~~~~LPV~~~~~~~~l~~~~~~~~Pd~vi~~G~a~-gr~~i~lEr 81 (211)
T PRK13196 3 TLLLTGFEPFHTHPVNPSAQAAQALNGEQAGALRVHSALLPVEPRAAMAALSRLLDELQPSAVLLTGLAA-GRPQVTLER 81 (211)
T ss_pred EEEEEeecCCCCCCCCcHHHHHHhcccccCCCcEEEEEEeCCChhHHHHHHHHHHHHhCCCEEEEecccC-CcCcEEEEE
Confidence 3678898888787777766666655433112222556688999999999999999877789999987554 667777655
Q ss_pred H
Q psy7342 282 M 282 (338)
Q Consensus 282 l 282 (338)
+
T Consensus 82 ~ 82 (211)
T PRK13196 82 V 82 (211)
T ss_pred E
Confidence 4
No 66
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=62.01 E-value=30 Score=32.16 Aligned_cols=77 Identities=21% Similarity=0.202 Sum_probs=54.6
Q ss_pred EEecCCCccCCeeecCcHHHHHHHHHcc-cCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHH
Q psy7342 203 LALVSDRCFNKESEDKSGPLLAQLLQED-FQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEA 281 (338)
Q Consensus 203 IIstGdEl~~G~i~DsN~~~L~~lL~~~-~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~ea 281 (338)
|+.||=|-+.|...|.+...+..+-... .|.++ ...++|=+.+...+.+.+++++.++|+||-.|=.+ |.+.++.|-
T Consensus 3 vLiTGF~PF~g~~~NPS~~~v~~L~~~~~~~~~v-~~~~LPv~~~~~~~~l~~~~~~~~Pd~vl~~G~a~-~r~~i~lEr 80 (209)
T PRK13193 3 VLLFGFEPFLEYKENPSQLIVEALNGSTILKEEV-KGVILPVEYEKIEDLIVTKIREMKPILTLGIGVAP-GRAKITPEK 80 (209)
T ss_pred EEEEeeCCCCCCCCCcHHHHHHHhhccccCCceE-EEEEeCCcHHHHHHHHHHHHHHHCCCEEEEecccC-CcCceEEEE
Confidence 7889988887776666665555554321 34454 44689999999999999988876799999887554 555555443
No 67
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=61.66 E-value=11 Score=33.19 Aligned_cols=68 Identities=24% Similarity=0.254 Sum_probs=42.2
Q ss_pred ecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCC-CChHHHHHhccccccC
Q psy7342 216 EDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPR-DVTPEAMNHLIDKKVP 291 (338)
Q Consensus 216 ~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~-D~t~eal~~l~~~~lp 291 (338)
+|++...|...+++ .|.++....+- .+.+.+.+ .+.+ +|.||.+||.+--.+ +...+.++.+.+...|
T Consensus 6 ~~~~~~~l~~~l~~-~~~~~~v~~~~-~~~~~~~~----~~~~--~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~P 74 (192)
T PF00117_consen 6 GDSFTHSLVRALRE-LGIDVEVVRVD-SDFEEPLE----DLDD--YDGIIISGGPGSPYDIEGLIELIREARERKIP 74 (192)
T ss_dssp SHTTHHHHHHHHHH-TTEEEEEEETT-GGHHHHHH----HTTT--SSEEEEECESSSTTSHHHHHHHHHHHHHTTSE
T ss_pred CHHHHHHHHHHHHH-CCCeEEEEECC-Cchhhhhh----hhcC--CCEEEECCcCCccccccccccccccccccceE
Confidence 57899999999999 99665544332 23333322 2333 899999999877443 3344444555444443
No 68
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=61.64 E-value=29 Score=30.79 Aligned_cols=65 Identities=25% Similarity=0.314 Sum_probs=40.8
Q ss_pred cCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhccccccC
Q psy7342 217 DKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVP 291 (338)
Q Consensus 217 DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l~~~~lp 291 (338)
++|...+...|++ .|.++.....- .+++.+.+ . ++|-||.+||-+....+-..+.++...+...|
T Consensus 8 ~~~~~~l~~~l~~-~g~~~~~~~~~-~~~~~~~~-----~---~~~glii~Gg~~~~~~~~~~~~i~~~~~~~~P 72 (188)
T TIGR00888 8 SQYTQLIARRLRE-LGVYSELVPNT-TPLEEIRE-----K---NPKGIILSGGPSSVYAENAPRADEKIFELGVP 72 (188)
T ss_pred chHHHHHHHHHHH-cCCEEEEEeCC-CCHHHHhh-----c---CCCEEEECCCCCCcCcCCchHHHHHHHhCCCC
Confidence 5789999999999 99876533321 23444421 1 25789999987654444445666665554444
No 69
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=60.75 E-value=26 Score=32.57 Aligned_cols=79 Identities=23% Similarity=0.314 Sum_probs=53.6
Q ss_pred EEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHH
Q psy7342 203 LALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAM 282 (338)
Q Consensus 203 IIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal 282 (338)
|+.||=+-+.|...|.+...+..+-....+..-+...++|=+.+...+.+.+++++.++|+||..|=.+ +.+.++.|-.
T Consensus 4 ILvTGF~PF~~~~~NPS~~~~~~L~~~~~~~~~i~~~~lPV~y~~~~~~l~~~l~~~~Pd~vih~G~a~-~~~~i~lEr~ 82 (215)
T PRK13197 4 ILVTGFDPFGGEKINPSWEAVKQLPGKEIGGAEIIKRQLPTVFGKSAEVLKEAIEEVQPDAVICIGQAG-GRTDITPERV 82 (215)
T ss_pred EEEeeccCCCCCCCCcHHHHHHHccccccCCcEEEEEEECCChHHHHHHHHHHHHHhCCCEEEEeccCC-CCCcEEeEee
Confidence 888998888777666666555555333112123455688988888888888888766699999998554 6666655443
No 70
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=60.68 E-value=38 Score=31.49 Aligned_cols=80 Identities=18% Similarity=0.180 Sum_probs=57.9
Q ss_pred EEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHH
Q psy7342 203 LALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAM 282 (338)
Q Consensus 203 IIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal 282 (338)
|+.||=|-+.|+..|-+-..++.+=.+..|..-+...++|-.+.+..++|.+.+++.+.|+||..|=. .|..++|+|=+
T Consensus 3 vLvTGFePF~~~~~NPs~e~vk~L~~~~i~g~~V~~~~lP~~f~~s~~~l~~~i~~~qPd~vl~iG~A-~GR~~iT~ERV 81 (207)
T COG2039 3 VLVTGFEPFGGEPINPSWEAVKELNGRIIGGAEVKGRILPVVFKKSIDALVQAIAEVQPDLVLAIGQA-GGRTKITPERV 81 (207)
T ss_pred EEEEeccCCCCCCCChHHHHHHhcCcccccCceEEEEEcCccHHHHHHHHHHHHHhhCCCeEEEeccc-CCCCcCChhhe
Confidence 67888887777666655444444433312444466668999999999999999988889999998754 47888888765
Q ss_pred H
Q psy7342 283 N 283 (338)
Q Consensus 283 ~ 283 (338)
.
T Consensus 82 A 82 (207)
T COG2039 82 A 82 (207)
T ss_pred e
Confidence 3
No 71
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=60.40 E-value=19 Score=36.39 Aligned_cols=52 Identities=17% Similarity=0.131 Sum_probs=37.0
Q ss_pred HHHHHHHHcccCCEEEEEEEcCCCH--HHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 221 PLLAQLLQEDFQHAHILKTCVPDEM--EEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~iV~Dd~--e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
..+...|++ .|.++..+.-+..|+ +.+.+.++.+.+. ++|+||-.||-|+=+
T Consensus 67 ~~v~~~L~~-~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~-~~D~IiavGGGS~iD 120 (395)
T PRK15454 67 AGLTRSLAV-KGIAMTLWPCPVGEPCITDVCAAVAQLRES-GCDGVIAFGGGSVLD 120 (395)
T ss_pred HHHHHHHHH-cCCeEEEECCCCCCcCHHHHHHHHHHHHhc-CcCEEEEeCChHHHH
Confidence 457788888 899887665444443 5677776665554 699999999987543
No 72
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=59.77 E-value=26 Score=30.80 Aligned_cols=52 Identities=12% Similarity=0.076 Sum_probs=40.3
Q ss_pred HHHHHHHcccCCEEEEEEE-cCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 222 LLAQLLQEDFQHAHILKTC-VPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 222 ~L~~lL~~~~G~~v~~~~i-V~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
.|.+.|++ .|+++.+++. -+.|...+...+.+.+.++.+|.=|..-|||+|-
T Consensus 17 ~i~~~L~~-~G~eV~D~G~~~~~dYpd~a~~va~~V~~~e~~~GIliCGtGiG~ 69 (141)
T TIGR01118 17 VIKNFLVD-NGFEVIDVTEGDGQDFVDVTLAVASEVQKDEQNLGIVIDAYGAGS 69 (141)
T ss_pred HHHHHHHH-CCCEEEEcCCCCCCCcHHHHHHHHHHHHcCCCceEEEEcCCCHhH
Confidence 45567888 9999999986 2246677888888888766789888888998885
No 73
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=59.46 E-value=28 Score=33.73 Aligned_cols=79 Identities=11% Similarity=0.019 Sum_probs=50.1
Q ss_pred cCceEEEEecCCCc-----c----CC----eee--cCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCC
Q psy7342 197 RSTCHLLALVSDRC-----F----NK----ESE--DKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKV 261 (338)
Q Consensus 197 ~~prVaIIstGdEl-----~----~G----~i~--DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~ 261 (338)
+++|++|+.+|.-= . .| ++. =+|.+-+..+.++ +|+.+.....-+++.+...+.+.+++.+.++
T Consensus 88 ~~~ri~vl~Sg~g~nl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~-~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~ 166 (286)
T PRK13011 88 ARPKVLIMVSKFDHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAW-HGIPFHHFPITPDTKPQQEAQVLDVVEESGA 166 (286)
T ss_pred cCceEEEEEcCCcccHHHHHHHHHcCCCCcEEEEEEECCccHHHHHHH-hCCCEEEeCCCcCchhhhHHHHHHHHHHhCc
Confidence 57899999998531 1 12 221 1455567777888 9998766544345555555555665655569
Q ss_pred cEEEEeCCccCCCCC
Q psy7342 262 DLIFTSGGTGMSPRD 276 (338)
Q Consensus 262 DlVITTGGts~G~~D 276 (338)
|+|++.|=...=+.+
T Consensus 167 Dlivlagy~~il~~~ 181 (286)
T PRK13011 167 ELVVLARYMQVLSPE 181 (286)
T ss_pred CEEEEeChhhhCCHH
Confidence 999999865554433
No 74
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=59.31 E-value=27 Score=33.79 Aligned_cols=75 Identities=12% Similarity=0.099 Sum_probs=47.2
Q ss_pred cCceEEEEecCCCcc---------CC----ee--ecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCC
Q psy7342 197 RSTCHLLALVSDRCF---------NK----ES--EDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKV 261 (338)
Q Consensus 197 ~~prVaIIstGdEl~---------~G----~i--~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~ 261 (338)
+++|++|+.+|+-=. .| ++ .=+|.+-+..+.++ +|+.+.....-+++.++....+.+++.+.++
T Consensus 88 ~~~ri~vl~Sg~gsnl~al~~~~~~~~~~~~i~~visn~~~~~~lA~~-~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~ 166 (286)
T PRK06027 88 ERKRVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHDDLRSLVER-FGIPFHHVPVTKETKAEAEARLLELIDEYQP 166 (286)
T ss_pred cCcEEEEEEcCCCCCHHHHHHHHHcCCCCcEEEEEEEcChhHHHHHHH-hCCCEEEeccCccccchhHHHHHHHHHHhCC
Confidence 678999999987411 22 21 11455667777888 9988766544334444445555555554569
Q ss_pred cEEEEeCCccC
Q psy7342 262 DLIFTSGGTGM 272 (338)
Q Consensus 262 DlVITTGGts~ 272 (338)
|+|++.|=.-.
T Consensus 167 Dlivlagy~~i 177 (286)
T PRK06027 167 DLVVLARYMQI 177 (286)
T ss_pred CEEEEecchhh
Confidence 99999984433
No 75
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=59.30 E-value=31 Score=37.14 Aligned_cols=89 Identities=17% Similarity=0.099 Sum_probs=64.0
Q ss_pred hhcHHHHHhhCCCceeEeecCceEEEEecCCCccCCee-ecCcHHHHHHHHHcccCCEEEEEEE--cCC-----------
Q psy7342 178 PDTNHAQRCSTSMKYWELVRSTCHLLALVSDRCFNKES-EDKSGPLLAQLLQEDFQHAHILKTC--VPD----------- 243 (338)
Q Consensus 178 p~~i~~lLas~Gi~~v~V~~~prVaIIstGdEl~~G~i-~DsN~~~L~~lL~~~~G~~v~~~~i--V~D----------- 243 (338)
+.+- ++|.+.|+++-. +.+|.|+|+.+-+|+.++.. .+.-...++.-+++ .|.....+.+ +.|
T Consensus 15 a~~r-a~l~a~G~~ded-~~kP~IgI~ns~~e~~pch~hl~~la~~vk~gi~~-aGG~p~ef~ti~v~Dgit~g~~GM~y 91 (615)
T PRK12448 15 AGAR-ALWRATGMKDED-FGKPIIAVVNSFTQFVPGHVHLKDLGQLVAREIEA-AGGVAKEFNTIAVDDGIAMGHGGMLY 91 (615)
T ss_pred HHHH-HHHHHcCCChHH-hCCCEEEEEeccccCcCchhhHHHHHHHHHHHHHH-cCCeeeEeccCcccCCcCcCCcccee
Confidence 4555 899999998876 68999999999999988743 34456666677777 7765544432 122
Q ss_pred ---CHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 244 ---EMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 244 ---d~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
++|.|...++..+..+.+|-+|..||
T Consensus 92 SL~SRelIAdsiE~~~~a~~~Dg~V~i~~ 120 (615)
T PRK12448 92 SLPSRELIADSVEYMVNAHCADAMVCISN 120 (615)
T ss_pred chhhHHHHHHHHHHHhhCCCcceEEEecc
Confidence 36788888888887666787766654
No 76
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=58.83 E-value=21 Score=31.24 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=30.2
Q ss_pred cCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccC
Q psy7342 217 DKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGM 272 (338)
Q Consensus 217 DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~ 272 (338)
++|...+...|++ .|+.+... +.+.. .. ...+++ +|.||.+||.+.
T Consensus 8 ~~~~~~~~~~l~~-~G~~~~~~---~~~~~-~~---~~~~~~--~dgvIl~Gg~~~ 53 (181)
T cd01742 8 SQYTHLIARRVRE-LGVYSEIL---PNTTP-LE---EIKLKN--PKGIILSGGPSS 53 (181)
T ss_pred CchHHHHHHHHHh-cCceEEEe---cCCCC-hh---hhcccC--CCEEEECCCccc
Confidence 5788889999999 99866533 33221 00 112333 899999999664
No 77
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=58.76 E-value=22 Score=34.32 Aligned_cols=68 Identities=19% Similarity=0.124 Sum_probs=42.0
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHccc-CCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDF-QHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~-G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
.+++++..|.-- ..-.-++.-.-+..+-++ + |+++....-++++.+...+.++++.++ ++|+||++|.
T Consensus 2 ~~v~~~~~g~~~-D~g~n~~~~~G~~~~~~~-~~~i~~~~~e~~~~~~~~~~~~~~~~~~~-g~dlIi~~g~ 70 (306)
T PF02608_consen 2 KKVALLDPGGIN-DKGFNQSAYEGLKRAEKE-LDGIEIIYVENVPETDADYEEAIRQLADQ-GYDLIIGHGF 70 (306)
T ss_dssp EEEEEESSS-CC-CSSHHHHHHHHHHHHHHH-CTTEEEEEEES-S-TCHHHHHHHHHHHHT-T-SEEEEESG
T ss_pred eEEEEEECCCCC-CccHHHHHHHHHHHHHHH-cCCceEEEEecCCccHHHHHHHHHHHHHc-CCCEEEEccH
Confidence 356676655421 111112223345556666 8 899988888886677888888888776 6999999884
No 78
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=57.83 E-value=19 Score=36.77 Aligned_cols=71 Identities=15% Similarity=0.118 Sum_probs=52.2
Q ss_pred ceEEEEecCCCcc---CCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEE---eCCcc
Q psy7342 199 TCHLLALVSDRCF---NKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFT---SGGTG 271 (338)
Q Consensus 199 prVaIIstGdEl~---~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVIT---TGGts 271 (338)
++++++++++.++ ...........+.+.|++ .|++++....+.-+.++++++.+.+..+ ++|.||+ |+|.+
T Consensus 1 ~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~vv~~~~~~~~~~~~~~~~~~~~~~-~~d~ii~~~~tf~~~ 77 (452)
T cd00578 1 PKIGFVTGSQHLYGEELLEQVEEYAREVADLLNE-LPVEVVDKPEVTGTPDEARKAAEEFNEA-NCDGLIVWMHTFGPA 77 (452)
T ss_pred CEEEEEEecccccChhHHHHHHHHHHHHHHHHhc-CCceEEecCcccCCHHHHHHHHHHHhhc-CCcEEEEcccccccH
Confidence 5899999999852 222334456677778888 8999999886655888999888877765 6999886 45444
No 79
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=57.78 E-value=21 Score=33.89 Aligned_cols=65 Identities=17% Similarity=0.076 Sum_probs=40.6
Q ss_pred eEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEE----EEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 200 CHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAH----ILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 200 rVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v----~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
+|+|+...+- ...|.--.-+.+.|++ .|+.. ..+.-...|++.+.+.+++.... ++|+|||+|..
T Consensus 1 ~v~i~~~~~~----~~~~~~~~gf~~~L~~-~g~~~~~~~~~~~~a~~d~~~~~~~~~~l~~~-~~DlIi~~gt~ 69 (294)
T PF04392_consen 1 KVGILQFISH----PALDDIVRGFKDGLKE-LGYDEKNVEIEYKNAEGDPEKLRQIARKLKAQ-KPDLIIAIGTP 69 (294)
T ss_dssp EEEEEESS------HHHHHHHHHHHHHHHH-TT--CCCEEEEEEE-TT-HHHHHHHHHHHCCT-S-SEEEEESHH
T ss_pred CeEEEEEecc----HHHHHHHHHHHHHHHH-cCCccccEEEEEecCCCCHHHHHHHHHHHhcC-CCCEEEEeCcH
Confidence 5677776543 3344455667778888 88764 33455677888888888876554 69999999843
No 80
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=56.97 E-value=35 Score=31.65 Aligned_cols=67 Identities=13% Similarity=0.269 Sum_probs=48.0
Q ss_pred EEecCCCccCCeeecCcHHHHHHHHHcc-cCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 203 LALVSDRCFNKESEDKSGPLLAQLLQED-FQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 203 IIstGdEl~~G~i~DsN~~~L~~lL~~~-~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
|+.||=+-+.|.-.|.+...+.. |..+ .+..-+...++|=+.+...+.+.+++++.+.|+||-.|=.
T Consensus 3 ILvTGF~PF~~~~~NPS~~~~~~-L~~~~~~~~~v~~~~LPV~~~~~~~~l~~~l~~~~Pd~vlhlG~a 70 (208)
T PRK13194 3 VLVTGFEPFGGDKKNPTMDIVKA-LDGKKIGDAKVFGRVLPVSFKRAREELEKVLDEIKPDITINLGLA 70 (208)
T ss_pred EEEEeeCCCCCCCCCcHHHHHHh-ccccccCCcEEEEEEeCCchHhHHHHHHHHHHHhCCCEEEEeecc
Confidence 78899888877766655555544 4441 2333455668999999999999998876568999988733
No 81
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=56.85 E-value=33 Score=36.47 Aligned_cols=89 Identities=10% Similarity=-0.043 Sum_probs=64.3
Q ss_pred hhcHHHHHhhCCCceeEeecCceEEEEecCCCccCCee-ecCcHHHHHHHHHcccCCEEEEEEE-cC-C-----------
Q psy7342 178 PDTNHAQRCSTSMKYWELVRSTCHLLALVSDRCFNKES-EDKSGPLLAQLLQEDFQHAHILKTC-VP-D----------- 243 (338)
Q Consensus 178 p~~i~~lLas~Gi~~v~V~~~prVaIIstGdEl~~G~i-~DsN~~~L~~lL~~~~G~~v~~~~i-V~-D----------- 243 (338)
+.+- ++|.+.|++.-. +.||.|+|+.|.+|+.++.. .+.-...++.-+.+ .|.....+.+ .. |
T Consensus 13 a~~r-a~~~a~G~~~ed-l~kP~IgI~ns~se~~Pch~hl~~la~~Vk~gi~~-aGg~p~ef~ti~~~Dgi~~g~~GM~y 89 (552)
T PRK00911 13 APHR-SMLRATGLTDED-FDKPFIGIANSWNEITPCNIHLNELADAVKEGVRA-AGGVPFEFNTIGVSDGIAMGHEGMKY 89 (552)
T ss_pred HHHH-HHHHHcCCChHH-hcCCEEEEeccccccccchhhHHHHHHHHHHHHHH-cCCEeEEeCCCccccccccCccccee
Confidence 4556 899999998877 58999999999999988743 34445566666777 7765554433 22 2
Q ss_pred ---CHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 244 ---EMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 244 ---d~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
.+|.|...++..+..+.+|-+|..+|
T Consensus 90 sL~sReliA~~iE~~~~a~~~Dg~V~l~~ 118 (552)
T PRK00911 90 SLVSREVIADSIETVVNAHWFDGLVAIPG 118 (552)
T ss_pred hhhhHHHHHHHHHHHhhCCCcceEEEecc
Confidence 36788888888887666787776665
No 82
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=56.28 E-value=31 Score=34.27 Aligned_cols=53 Identities=11% Similarity=0.119 Sum_probs=36.8
Q ss_pred HHHHHHHHHcccCCEEEEEEEcCCC-HHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 220 GPLLAQLLQEDFQHAHILKTCVPDE-MEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 220 ~~~L~~lL~~~~G~~v~~~~iV~Dd-~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
..-+...|++ .|+++..+.+.++- .+.+.+.++.+.+. ++|+||-.||-|+-+
T Consensus 36 ~~~v~~~L~~-~g~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~D~IIaiGGGS~~D 89 (374)
T cd08183 36 AAWLIEALRA-AGIEVTHVVVAGEPSVELVDAAVAEARNA-GCDVVIAIGGGSVID 89 (374)
T ss_pred HHHHHHHHHH-cCCeEEEecCCCCcCHHHHHHHHHHHHhc-CCCEEEEecCchHHH
Confidence 3456677888 89887766654432 45566666655443 699999999987755
No 83
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=56.00 E-value=33 Score=27.94 Aligned_cols=51 Identities=24% Similarity=0.140 Sum_probs=37.0
Q ss_pred CeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 213 KESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 213 G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
|+..+-...+++.+|++ .|+++++.+. .-..+++.+++.+ .++|+|..|.-
T Consensus 9 ~e~H~lG~~~~~~~l~~-~G~~V~~lg~-~~~~~~l~~~~~~----~~pdvV~iS~~ 59 (119)
T cd02067 9 GDGHDIGKNIVARALRD-AGFEVIDLGV-DVPPEEIVEAAKE----EDADAIGLSGL 59 (119)
T ss_pred CchhhHHHHHHHHHHHH-CCCEEEECCC-CCCHHHHHHHHHH----cCCCEEEEecc
Confidence 45566677899999999 9999988872 3345566665554 24899998765
No 84
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=55.73 E-value=31 Score=32.44 Aligned_cols=77 Identities=12% Similarity=0.042 Sum_probs=52.2
Q ss_pred EEecCCCccCCeeecCcHHHHHHHHHcc-cCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHH
Q psy7342 203 LALVSDRCFNKESEDKSGPLLAQLLQED-FQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEA 281 (338)
Q Consensus 203 IIstGdEl~~G~i~DsN~~~L~~lL~~~-~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~ea 281 (338)
|+.||=|-+.|...|.+...+..+-... .|.++. ..++|=+.+...+.+.+++++.+.|+||-.|=.| |.+.++.|-
T Consensus 4 ILvTGF~PFgg~~~NPS~~~v~~L~~~~~~~~~v~-~~~lPv~f~~~~~~l~~~i~~~~Pd~Vi~~G~a~-gr~~itlEr 81 (222)
T PRK13195 4 VLVTGFGPYGVTPVNPAQLTAEELDGRTIAGATVI-SRIVPNTFFESIAAAQQAIAEIEPALVIMLGEYP-GRSMITVER 81 (222)
T ss_pred EEEeeecCCCCCCcCchHHHHHhccccccCCeEEE-EEEeCeEehHHHHHHHHHHHHHCCCEEEEeCccC-CcCceEeEE
Confidence 7889999888877777765555543221 233433 3477888877777777777776799999998554 666666543
No 85
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=55.21 E-value=29 Score=31.15 Aligned_cols=59 Identities=17% Similarity=0.299 Sum_probs=34.2
Q ss_pred cHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHH--------HHHHHhCCCCcEEEE-eCCccCCCCCChHHHHHhcc
Q psy7342 219 SGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDK--------LKYWVDQSKVDLIFT-SGGTGMSPRDVTPEAMNHLI 286 (338)
Q Consensus 219 N~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~a--------L~~a~~~~~~DlVIT-TGGts~G~~D~t~eal~~l~ 286 (338)
-|.-++..|+. +|..++-..+ |-...++.. +++++.+ +|++|| ||..++ ++.+-++.+-
T Consensus 34 vG~g~A~~lr~-~Ga~V~V~e~--DPi~alqA~~dGf~v~~~~~a~~~--adi~vtaTG~~~v----i~~e~~~~mk 101 (162)
T PF00670_consen 34 VGKGIARALRG-LGARVTVTEI--DPIRALQAAMDGFEVMTLEEALRD--ADIFVTATGNKDV----ITGEHFRQMK 101 (162)
T ss_dssp HHHHHHHHHHH-TT-EEEEE-S--SHHHHHHHHHTT-EEE-HHHHTTT---SEEEE-SSSSSS----B-HHHHHHS-
T ss_pred ccHHHHHHHhh-CCCEEEEEEC--ChHHHHHhhhcCcEecCHHHHHhh--CCEEEECCCCccc----cCHHHHHHhc
Confidence 47788999999 9988875554 323344444 4566665 899998 444332 3455555543
No 86
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=53.00 E-value=44 Score=29.60 Aligned_cols=58 Identities=14% Similarity=0.050 Sum_probs=43.0
Q ss_pred cCcHHHHHHH----HHcc-cCCEEEEEEE---cCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 217 DKSGPLLAQL----LQED-FQHAHILKTC---VPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 217 DsN~~~L~~l----L~~~-~G~~v~~~~i---V~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
|..|.-|+.. |+++ .|+++++++. -+.|+-.+...+.+.+.++.+|.-|..-|||+|.
T Consensus 10 DhaG~~lK~~l~~~L~~~~~g~eV~D~G~~~~~~~dYp~~a~~va~~V~~~~~~~GIliCGtGiG~ 75 (151)
T PTZ00215 10 DHAGFDLKNEIIDYIKNKGKEYKIEDMGTYTAESVDYPDFAEKVCEEVLKGEADTGILVCGSGIGI 75 (151)
T ss_pred CCchHHHHHHHHHHHHhccCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhcCCCcEEEEEcCCcHHH
Confidence 5566655554 4432 5889999886 3457888888888888776799999999999885
No 87
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=52.78 E-value=35 Score=30.30 Aligned_cols=70 Identities=13% Similarity=0.079 Sum_probs=48.8
Q ss_pred EEEEecCCCccCCeeecC-c--HHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccC
Q psy7342 201 HLLALVSDRCFNKESEDK-S--GPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGM 272 (338)
Q Consensus 201 VaIIstGdEl~~G~i~Ds-N--~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~ 272 (338)
-.|+-.||.+..|.-.+. + ...+.+.+.. ...+...++-.|.-....+.+.+.+....+|+||...|+==
T Consensus 11 ~~iv~~GDSit~G~~~~~~~~w~~~l~~~l~~--~~~v~N~Gi~G~tt~~~~~rl~~~l~~~~pd~Vii~~GtND 83 (191)
T PRK10528 11 DTLLILGDSLSAGYRMPASAAWPALLNDKWQS--KTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGND 83 (191)
T ss_pred CEEEEEeCchhhcCCCCccCchHHHHHHHHhh--CCCEEecCcCcccHHHHHHHHHHHHHhcCCCEEEEEeccCc
Confidence 357788999987743322 2 2345555544 24589999999998888888888775445899998888753
No 88
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=52.57 E-value=40 Score=32.33 Aligned_cols=65 Identities=9% Similarity=-0.018 Sum_probs=35.3
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCC
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDV 277 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~ 277 (338)
||||+|+.. +|.--| .-+...++. .|+++....+ .| .+.+. ..+++ +|+|+..||.|.|++--
T Consensus 1 kpkV~Vl~~-----pGtNce---~e~~~A~~~-aG~~~~~v~~-~d---l~~~~--~~l~~--~~~lvipGGFS~gD~l~ 63 (259)
T PF13507_consen 1 KPKVAVLRF-----PGTNCE---RETAAAFEN-AGFEPEIVHI-ND---LLSGE--SDLDD--FDGLVIPGGFSYGDYLR 63 (259)
T ss_dssp --EEEEEE------TTEEEH---HHHHHHHHC-TT-EEEEEEC-CH---HHTTS----GCC---SEEEE-EE-GGGGTTS
T ss_pred CCEEEEEEC-----CCCCCH---HHHHHHHHH-cCCCceEEEE-Ee---ccccc--Cchhh--CcEEEECCccCccccch
Confidence 588998873 453333 345667788 9999877432 22 11110 14444 89999999999998764
Q ss_pred hH
Q psy7342 278 TP 279 (338)
Q Consensus 278 t~ 279 (338)
.-
T Consensus 64 sg 65 (259)
T PF13507_consen 64 SG 65 (259)
T ss_dssp TT
T ss_pred HH
Confidence 33
No 89
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=52.54 E-value=36 Score=30.42 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=30.7
Q ss_pred ecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccC
Q psy7342 216 EDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGM 272 (338)
Q Consensus 216 ~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~ 272 (338)
+|+-++.+..+|++ .|.++..+..-..+++. +++ +|.||.+||.+.
T Consensus 10 ~dsf~~~i~~~l~~-~g~~~~v~~~~~~~~~~--------l~~--~d~iIi~gGp~~ 55 (190)
T PRK06895 10 HDSFTFNLVDLIRK-LGVPMQVVNVEDLDLDE--------VEN--FSHILISPGPDV 55 (190)
T ss_pred CCchHHHHHHHHHH-cCCcEEEEECCccChhH--------hcc--CCEEEECCCCCC
Confidence 35667779999999 99876654331112221 233 799999999873
No 90
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=51.85 E-value=12 Score=36.82 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=26.3
Q ss_pred cccCCCceeChhcHHHHHhhCCCceeEeec
Q psy7342 168 QQYSTTQVIRPDTNHAQRCSTSMKYWELVR 197 (338)
Q Consensus 168 ~ll~~G~~l~p~~i~~lLas~Gi~~v~V~~ 197 (338)
..++||++|++.|| ..|.+.|..+|.|.+
T Consensus 19 ~~~~kG~vi~~~di-~~L~~~G~~~v~v~~ 47 (312)
T cd03522 19 RAFKKGHVLTAEDI-AALLAAGKEHVYVAR 47 (312)
T ss_pred ceecCCCCCCHHHH-HHHHhCCCcEEEEEE
Confidence 67889999999999 999999999997764
No 91
>PRK05670 anthranilate synthase component II; Provisional
Probab=51.40 E-value=43 Score=29.82 Aligned_cols=60 Identities=22% Similarity=0.190 Sum_probs=38.2
Q ss_pred cCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc-cCCCCCChHHHHHhc
Q psy7342 217 DKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT-GMSPRDVTPEAMNHL 285 (338)
Q Consensus 217 DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt-s~G~~D~t~eal~~l 285 (338)
|+-...+..+|++ .|+++.....-..+.+.+ +. + ++|.||.+||- ++.+.+...+.++.+
T Consensus 9 d~f~~~i~~~l~~-~g~~~~v~~~~~~~~~~~----~~-~---~~dglIlsgGpg~~~d~~~~~~~l~~~ 69 (189)
T PRK05670 9 DSFTYNLVQYLGE-LGAEVVVYRNDEITLEEI----EA-L---NPDAIVLSPGPGTPAEAGISLELIREF 69 (189)
T ss_pred CchHHHHHHHHHH-CCCcEEEEECCCCCHHHH----Hh-C---CCCEEEEcCCCCChHHcchHHHHHHHh
Confidence 6678889999999 998876554432233333 21 1 27999999887 444444566666554
No 92
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I. Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.
Probab=51.06 E-value=49 Score=30.73 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=53.3
Q ss_pred EEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHH
Q psy7342 203 LALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEA 281 (338)
Q Consensus 203 IIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~ea 281 (338)
|+.||=+-+.|...|.+...+..+-....|.+ +...++|=+.+...+.+.+++++...|+||..|=.| |..-++.|-
T Consensus 2 ILvTGF~PF~~~~~NPS~~~v~~L~~~~~g~~-i~~~~lPV~~~~~~~~l~~~l~~~~Pd~vi~~G~a~-g~~~i~lEr 78 (212)
T TIGR00504 2 VLLTGFEPFGVDPVNPSWEAAEELDGRTIGAT-VVAEILPNTFFEAIEALQQAIDEIEPDIVIMLGLAP-GRSMITVER 78 (212)
T ss_pred EEEEeccCCCCCCCCcHHHHHHhcccCcCCcE-EEEEEeCCChHHHHHHHHHHHHHHCCCEEEEeccCC-CcCceeeEE
Confidence 78889888877766666666555533312444 444568888888888888888766689999998655 555555443
No 93
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=50.22 E-value=51 Score=29.56 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=39.8
Q ss_pred ecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCC-ChHHHHHhccccccC
Q psy7342 216 EDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRD-VTPEAMNHLIDKKVP 291 (338)
Q Consensus 216 ~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D-~t~eal~~l~~~~lp 291 (338)
+||-.+.|..+|++ .|+++.- ++.|...+ +.+.. .++|.||.+||=|--.++ ...+.++. ....+|
T Consensus 8 ~Dsft~nl~~~l~~-~g~~v~v---~~~~~~~~-~~~~~----~~~d~iils~GPg~p~~~~~~~~~~~~-~~~~~P 74 (187)
T PRK08007 8 YDSFTWNLYQYFCE-LGADVLV---KRNDALTL-ADIDA----LKPQKIVISPGPCTPDEAGISLDVIRH-YAGRLP 74 (187)
T ss_pred CCccHHHHHHHHHH-CCCcEEE---EeCCCCCH-HHHHh----cCCCEEEEcCCCCChHHCCccHHHHHH-hcCCCC
Confidence 68999999999999 9987654 34442112 11221 137999999998644333 34444444 333444
No 94
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=49.87 E-value=41 Score=28.91 Aligned_cols=67 Identities=15% Similarity=0.054 Sum_probs=45.5
Q ss_pred EEecCCCccCCeeecC---cHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCC---CCcEEEEeCCcc
Q psy7342 203 LALVSDRCFNKESEDK---SGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQS---KVDLIFTSGGTG 271 (338)
Q Consensus 203 IIstGdEl~~G~i~Ds---N~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~---~~DlVITTGGts 271 (338)
|+..||.+..|.-... -...|+..+.. ++.+...++-.+.-..+.+.+++.+... .+|+||..-|+=
T Consensus 2 i~~~GDSit~g~~~~~~~~~~~~l~~~~~~--~~~v~N~g~~G~t~~~~~~~~~~~~~~~~~~~pd~vii~~G~N 74 (199)
T cd01838 2 IVLFGDSITQFSFDQGEFGFGAALADVYSR--KLDVINRGFSGYNTRWALKVLPKIFLEEKLAQPDLVTIFFGAN 74 (199)
T ss_pred EEEecCcccccccCCCCCcHHHHHHHHhcc--hhheeccCCCcccHHHHHHHHHHhcCccccCCceEEEEEecCc
Confidence 6778999987753322 12233333322 3678889998898888888888877644 489999887764
No 95
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=49.21 E-value=55 Score=35.03 Aligned_cols=90 Identities=11% Similarity=0.001 Sum_probs=69.9
Q ss_pred hhcHHHHHhhCCCceeEeecCceEEEEecCCCccCCee-ecCcHHHHHHHHHcccCCEEEEEE-EcCC------------
Q psy7342 178 PDTNHAQRCSTSMKYWELVRSTCHLLALVSDRCFNKES-EDKSGPLLAQLLQEDFQHAHILKT-CVPD------------ 243 (338)
Q Consensus 178 p~~i~~lLas~Gi~~v~V~~~prVaIIstGdEl~~G~i-~DsN~~~L~~lL~~~~G~~v~~~~-iV~D------------ 243 (338)
.... +++...|+++=+ +.+|-|+|+++.+++.++.. .+.-...++.-+++ .|.-...+. +--+
T Consensus 24 ~~~r-~l~~a~G~~~~~-~~kP~IgI~~s~~d~~p~h~hl~~l~~~vk~~i~~-aGg~p~ef~t~~v~DGiamG~~GM~~ 100 (575)
T COG0129 24 AGHR-SLLRATGLTDED-FGKPIIGIANSYNDMVPGHQHLKDLAQLVKEGIRE-AGGVPVEFGTIAVCDGIAMGHDGMPY 100 (575)
T ss_pred cchH-HHHHHhCCChHH-cCCCeEEEEeccccCcCchhhHHHHHHHHHHHHHH-cCCceeEeCCCCccCccccCCCCccc
Confidence 5556 889999998875 68999999999999998743 45667778888888 775444444 3334
Q ss_pred ---CHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 244 ---EMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 244 ---d~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
++|.|...++..+..+.+|-+|..||-
T Consensus 101 SL~SRelIAds~e~~~~~~~~Da~V~i~~C 130 (575)
T COG0129 101 SLPSRELIADSVEEVLSAHPFDGVVLIGGC 130 (575)
T ss_pred ccccHHHHHHHHHHHHhccCcceEEEecCC
Confidence 489999999999987778998888763
No 96
>TIGR01196 edd 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous.
Probab=48.95 E-value=49 Score=35.58 Aligned_cols=77 Identities=13% Similarity=0.055 Sum_probs=59.1
Q ss_pred eeEeecCceEEEEecCCCccCCe-eecCcHHHHHHHHHcccCCEEEEEEEcC---C--------------CHHHHHHHHH
Q psy7342 192 YWELVRSTCHLLALVSDRCFNKE-SEDKSGPLLAQLLQEDFQHAHILKTCVP---D--------------EMEEIKDKLK 253 (338)
Q Consensus 192 ~v~V~~~prVaIIstGdEl~~G~-i~DsN~~~L~~lL~~~~G~~v~~~~iV~---D--------------d~e~I~~aL~ 253 (338)
.+....+|.|+|+++.+|+.++. -++.-...++.-+++ .|.....++-+| | ++|.|...++
T Consensus 58 ~~~~~~kP~IgIvns~~d~~p~h~hl~~~~~~vk~~i~~-aGg~~~~~Gg~~a~cDGit~G~~GM~~SL~SRdlIA~sie 136 (601)
T TIGR01196 58 PLGSMKRPNLAIITAYNDMLSAHQPFKNYPDLIKKALQE-ANAVAQVAGGVPAMCDGVTQGYDGMELSLFSRDVIAMSTA 136 (601)
T ss_pred HHhccCCCEEEEEeccccCccccccHHHHHHHHHHHHHH-CCCEeEEeCCcCccCCCccCCCcccchhhhcHHHHHHHHH
Confidence 34556899999999999998864 366677788888888 888776663222 2 5788888888
Q ss_pred HHHhCCCCcEEEEeCC
Q psy7342 254 YWVDQSKVDLIFTSGG 269 (338)
Q Consensus 254 ~a~~~~~~DlVITTGG 269 (338)
..+..+.+|-+|..||
T Consensus 137 ~~l~~~~fDg~v~l~~ 152 (601)
T TIGR01196 137 IGLSHNMFDGALFLGV 152 (601)
T ss_pred HHhcCCCcceeEEecc
Confidence 8887767898888876
No 97
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=48.92 E-value=62 Score=28.14 Aligned_cols=70 Identities=11% Similarity=-0.062 Sum_probs=43.0
Q ss_pred EEEecCCCccCCeeec-Cc--HHHHHHHHH-cccCCEEEEEEEcCCCHHHHHHHHHHHHh----CCCCcEEEEeCCcc
Q psy7342 202 LLALVSDRCFNKESED-KS--GPLLAQLLQ-EDFQHAHILKTCVPDEMEEIKDKLKYWVD----QSKVDLIFTSGGTG 271 (338)
Q Consensus 202 aIIstGdEl~~G~i~D-sN--~~~L~~lL~-~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~----~~~~DlVITTGGts 271 (338)
.|+..||.+..|.-.. .+ ...+...+. ...++++...++-.+....+.+.+.+.+. ..++|+|+..-|+=
T Consensus 3 ~i~~lGDSit~G~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gi~G~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~N 80 (193)
T cd01835 3 RLIVVGDSLVYGWGDPEGGGWVGRLRARWMNLGDDPVLYNLGVRGDGSEDVAARWRAEWSRRGELNVPNRLVLSVGLN 80 (193)
T ss_pred EEEEEcCccccCCCCCCCCChHHHHHHHhhccCCCeeEEeecCCCCCHHHHHHHHHHHHHhhcccCCCCEEEEEecCc
Confidence 4566799998764321 12 222232222 21467888999999998888776655432 12489888887764
No 98
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=48.75 E-value=43 Score=28.56 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=44.1
Q ss_pred EEEecCCCccCCeeecCcHHHHHHHHHcc---cCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 202 LLALVSDRCFNKESEDKSGPLLAQLLQED---FQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 202 aIIstGdEl~~G~i~DsN~~~L~~lL~~~---~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
.|+..||.+..|.- -...+...|.+. .++.+...++-.+....+...+...+....+|+|+...|+
T Consensus 3 ~v~~~GDSit~g~~---~~~~~~~~l~~~~~~~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~~d~v~l~~G~ 71 (191)
T cd01834 3 RIVFIGNSITDRGG---YVGYVETYLAARYPELKLTFRNLGWSGDTVSDLAARRDRDVLPAKPDVVSIMFGI 71 (191)
T ss_pred EEEEeCCChhhccc---cHHHHHHHHHHhCCCCCcEEEEcccCccchhhhhhhhhcccccCCCCEEEEEeec
Confidence 46788999987752 223444455441 2578888999888877777555555444458999886655
No 99
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=48.68 E-value=60 Score=29.25 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=47.3
Q ss_pred EEecCCCccCCeeecCcHHHHHHHHHccc-CCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 203 LALVSDRCFNKESEDKSGPLLAQLLQEDF-QHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 203 IIstGdEl~~G~i~DsN~~~L~~lL~~~~-G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
|+.||=+-+.|...|.+...+..+-+... +.+ +....+|=+.+...+.+.+.+++...|+||..|=.+
T Consensus 3 vLvTGF~PF~~~~~NpS~~~v~~L~~~~~~~~~-i~~~~lpv~y~~~~~~~~~~~~~~~pd~vlhlG~~~ 71 (194)
T cd00501 3 VLVTGFGPFGGEPVNPSWEAVKELPKLILGGAE-VVGLELPVVFQKAVEVLPELIEEHKPDLVIHVGLAG 71 (194)
T ss_pred EEEEecCCCCCCCCChHHHHHHhccccccCCcE-EEEEEcCccHHHHHHHHHHHHHHhCCCEEEEecccC
Confidence 78889888777766766666655543311 333 444467888888888888888766799999987443
No 100
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=47.98 E-value=72 Score=28.11 Aligned_cols=66 Identities=21% Similarity=0.101 Sum_probs=37.7
Q ss_pred cCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhccccccC
Q psy7342 217 DKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVP 291 (338)
Q Consensus 217 DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l~~~~lp 291 (338)
|+-..++..+|++ .|.++..+..-.+ .+.+ .+ +.+ +|-||.+||-+.-.+|-..+.+.+.....+|
T Consensus 8 ~~~~~~~~~~l~~-~G~~~~~~~~~~~-~~~~----~~-~~~--~dgvil~gG~~~~~~~~~~~~i~~~~~~~~P 73 (184)
T cd01743 8 DSFTYNLVQYLRE-LGAEVVVVRNDEI-TLEE----LE-LLN--PDAIVISPGPGHPEDAGISLEIIRALAGKVP 73 (184)
T ss_pred CccHHHHHHHHHH-cCCceEEEeCCCC-CHHH----Hh-hcC--CCEEEECCCCCCcccchhHHHHHHHHhcCCC
Confidence 4556788999999 9988775555222 2222 12 233 8999988887754444333333333333344
No 101
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=47.49 E-value=1.1e+02 Score=28.60 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=44.2
Q ss_pred ecC-cHHHHHHHHHcccCCEEEEEE-EcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhcccc
Q psy7342 216 EDK-SGPLLAQLLQEDFQHAHILKT-CVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLIDK 288 (338)
Q Consensus 216 ~Ds-N~~~L~~lL~~~~G~~v~~~~-iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l~~~ 288 (338)
.|. +.+.+.. .++ +|+...... ---++++++.++|.+.+++.++|+|+..|=+.. +.++.++++-.+
T Consensus 35 sd~~~A~~ler-A~~-~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~~dlvvLAGyMrI----L~~~fl~~~~gr 103 (200)
T COG0299 35 SDKADAYALER-AAK-AGIPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVLAGYMRI----LGPEFLSRFEGR 103 (200)
T ss_pred eCCCCCHHHHH-HHH-cCCCEEEeccccCCCHHHHHHHHHHHHHhcCCCEEEEcchHHH----cCHHHHHHhhcc
Confidence 454 5666654 445 677643322 223468889999999999888999999996655 345555555443
No 102
>PRK02301 putative deoxyhypusine synthase; Provisional
Probab=46.77 E-value=1.5e+02 Score=29.49 Aligned_cols=65 Identities=8% Similarity=0.160 Sum_probs=42.3
Q ss_pred HHHHHHHHcccCCEEEEEEEcCC-CHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhccccccCCh
Q psy7342 221 PLLAQLLQEDFQHAHILKTCVPD-EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCI 293 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~iV~D-d~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l~~~~lpG~ 293 (338)
..+..+++. .++.+ ..+.... -+..+++.|..++++.-.|+||||||. +..+.++.++.....|.
T Consensus 47 ~i~~~ml~~-~~~~i-fL~~tg~mvsaGlr~ii~~Li~~~~VD~iVtTgan------iehD~~~~lg~~~y~G~ 112 (316)
T PRK02301 47 DIYEEMLAD-DDVTK-FFGLAGAMVPAGMRGIVSDLIRDGHIDVLVTTGAN------LTHDVIEAIGGHHHHGT 112 (316)
T ss_pred HHHHHHHhC-CCCeE-EEEcccchhHHHHHHHHHHHHHcCCeeEEEcCCCc------hHHHHHHHcCCCeeccC
Confidence 445556655 56655 3333222 356789999999988779999999987 44455666664444444
No 103
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=46.42 E-value=81 Score=27.30 Aligned_cols=66 Identities=12% Similarity=0.037 Sum_probs=42.1
Q ss_pred CeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhc
Q psy7342 213 KESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHL 285 (338)
Q Consensus 213 G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l 285 (338)
|.+.|.....+..+|+. .||++++.++--- ++++.++..+ +++|+|-.|.=.+ ......++.++.+
T Consensus 11 ~D~HdiGk~iv~~~l~~-~GfeVi~LG~~v~-~e~~v~aa~~----~~adiVglS~l~~-~~~~~~~~~~~~l 76 (134)
T TIGR01501 11 SDCHAVGNKILDHAFTN-AGFNVVNLGVLSP-QEEFIKAAIE----TKADAILVSSLYG-HGEIDCKGLRQKC 76 (134)
T ss_pred CChhhHhHHHHHHHHHH-CCCEEEECCCCCC-HHHHHHHHHH----cCCCEEEEecccc-cCHHHHHHHHHHH
Confidence 45677888899999999 9999999997332 3444433332 2589998877443 2222344444443
No 104
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=46.36 E-value=1.8e+02 Score=27.84 Aligned_cols=102 Identities=12% Similarity=0.077 Sum_probs=71.2
Q ss_pred ceeChhcHHHHHhhCCCceeEeecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCC------CHHH
Q psy7342 174 QVIRPDTNHAQRCSTSMKYWELVRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPD------EMEE 247 (338)
Q Consensus 174 ~~l~p~~i~~lLas~Gi~~v~V~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~D------d~e~ 247 (338)
..++|.|.+++-+++.+++- +.--.|.+++.|.+-. .....|...|. +|.+-.. ++.| |.-.
T Consensus 32 ~~iN~~D~~AlE~Alrlke~--~~g~~Vtvvs~Gp~~a------~~~~~lr~aLA--mGaD~av--li~d~~~~g~D~~~ 99 (256)
T PRK03359 32 AKISQYDLNAIEAACQLKQQ--AAEAQVTALSVGGKAL------TNAKGRKDVLS--RGPDELI--VVIDDQFEQALPQQ 99 (256)
T ss_pred cccChhhHHHHHHHHHHhhh--cCCCEEEEEEECCcch------hhHHHHHHHHH--cCCCEEE--EEecCcccCcCHHH
Confidence 35899999888888888873 2124899999997611 12356777776 4764211 2233 5667
Q ss_pred HHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhccc
Q psy7342 248 IKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLID 287 (338)
Q Consensus 248 I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l~~ 287 (338)
....|..++++.++|+|++-=.++=+..-.++..+.++++
T Consensus 100 tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg 139 (256)
T PRK03359 100 TASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILN 139 (256)
T ss_pred HHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhC
Confidence 7777777777667999999877777888889888887654
No 105
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=46.03 E-value=65 Score=25.05 Aligned_cols=49 Identities=18% Similarity=0.367 Sum_probs=40.8
Q ss_pred CcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 218 KSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 218 sN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
..|.+++..++. +|+.++.-..-..-..++++.++.+- + +.++.||--|
T Consensus 20 ~DGe~ia~~~~~-~G~~~iRGSs~rgg~~Alr~~~~~lk-~-G~~~~itpDG 68 (74)
T PF04028_consen 20 RDGELIARVLER-FGFRTIRGSSSRGGARALREMLRALK-E-GYSIAITPDG 68 (74)
T ss_pred cCHHHHHHHHHH-cCCCeEEeCCCCcHHHHHHHHHHHHH-C-CCeEEEeCCC
Confidence 468999999999 99999999877778889999888765 3 4899998654
No 106
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=45.76 E-value=31 Score=31.65 Aligned_cols=74 Identities=16% Similarity=0.202 Sum_probs=42.6
Q ss_pred EEecCCCccCCeeecCcHHHHHHHHHc-ccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCCh
Q psy7342 203 LALVSDRCFNKESEDKSGPLLAQLLQE-DFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVT 278 (338)
Q Consensus 203 IIstGdEl~~G~i~DsN~~~L~~lL~~-~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t 278 (338)
|+.||=+-+.|...|.+...+ ..|.+ ..+-.-+...++|=+.+...+.+.+++++.+.|+||-.|=.+ +.+-+.
T Consensus 3 ILvTGFgpF~~~~~NpS~~~v-~~L~~~~~~~~~v~~~~lPV~~~~~~~~l~~~l~~~~PdlVIhlGva~-~~~~i~ 77 (202)
T PF01470_consen 3 ILVTGFGPFGGVPVNPSWELV-KRLPGELIGGAEVHTRELPVSYEKAFEALEELLEEHQPDLVIHLGVAG-GRKSIR 77 (202)
T ss_dssp EEEEEE-S-TT-SS-HHHHHH-HHHTTSEETTEEEEEEEE-SSHHHHHHHHHHHHHHH--SEEEEEEE-T-T-SSEE
T ss_pred EEEecccCCCCCCCChHHHHH-HHcCCCcCCCceEEEEEecCchHhHHHHHHHHHHhcCCcEEEEEeecC-Ccchhh
Confidence 677887777666555554444 44543 123233557788999999989999888766699999876443 444443
No 107
>COG1899 DYS1 Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=45.62 E-value=45 Score=33.06 Aligned_cols=63 Identities=11% Similarity=0.238 Sum_probs=42.1
Q ss_pred HHHHHHHHcccCCEEEEEEEcCCC-HHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhccccccCC
Q psy7342 221 PLLAQLLQEDFQHAHILKTCVPDE-MEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVPC 292 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~iV~Dd-~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l~~~~lpG 292 (338)
..+..+++. . ..++.+...+= +.-+++.|..++++.-.|+||||||. +..+.++.++.....|
T Consensus 45 ~I~~~m~~~-~--~tvfl~~tg~~vssGlR~iia~LIr~~~idvvVTTgg~------l~hDi~~~lg~~~~~G 108 (318)
T COG1899 45 EILREMLES-R--VTVFLGLTGNLVSSGLREIIADLIRNGLIDVVVTTGGN------LDHDIIKALGGPHYCG 108 (318)
T ss_pred HHHHHHHhh-c--CEEEEeccccccchhHHHHHHHHHHcCCeEEEEecCCc------hhHHHHHHcCCCeecc
Confidence 445555655 3 33444443332 45688999999988779999999997 5666677776555544
No 108
>CHL00101 trpG anthranilate synthase component 2
Probab=45.48 E-value=65 Score=28.84 Aligned_cols=67 Identities=16% Similarity=0.140 Sum_probs=38.6
Q ss_pred ecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhccccccC
Q psy7342 216 EDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVP 291 (338)
Q Consensus 216 ~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l~~~~lp 291 (338)
+|+-.+.|..+|++ .|.++. +++.+...+.+ +.. . .+|.||.+||-|--.++-....+.+......|
T Consensus 8 ~dsft~~l~~~l~~-~g~~~~---v~~~~~~~~~~-~~~--~--~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~P 74 (190)
T CHL00101 8 YDSFTYNLVQSLGE-LNSDVL---VCRNDEIDLSK-IKN--L--NIRHIIISPGPGHPRDSGISLDVISSYAPYIP 74 (190)
T ss_pred CCchHHHHHHHHHh-cCCCEE---EEECCCCCHHH-Hhh--C--CCCEEEECCCCCChHHCcchHHHHHHhcCCCc
Confidence 36778889999999 997764 44533211111 111 1 38999999999754333333333333444444
No 109
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=45.29 E-value=60 Score=32.55 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=35.6
Q ss_pred HHHHHHHHcccCCEEEEEE-EcCC-CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 221 PLLAQLLQEDFQHAHILKT-CVPD-EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~-iV~D-d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
..+...|++ .|..+..+. +.|+ +.+.+.+.++.+.+. ++|.||-.||-|+=+
T Consensus 49 ~~v~~~L~~-~~i~~~~f~~v~~np~~~~v~~~~~~~~~~-~~D~IiaiGGGS~iD 102 (383)
T PRK09860 49 GDVQKALEE-RNIFSVIYDGTQPNPTTENVAAGLKLLKEN-NCDSVISLGGGSPHD 102 (383)
T ss_pred HHHHHHHHH-cCCeEEEeCCCCCCcCHHHHHHHHHHHHHc-CCCEEEEeCCchHHH
Confidence 357888888 898776554 4433 346677776665554 699999999876543
No 110
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=45.26 E-value=73 Score=28.94 Aligned_cols=52 Identities=10% Similarity=0.003 Sum_probs=29.6
Q ss_pred HHHHHHHcccCCEEEEEEEcC-CCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 222 LLAQLLQEDFQHAHILKTCVP-DEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 222 ~L~~lL~~~~G~~v~~~~iV~-Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
...++.++ .|+.+....... ++.+...+.+.+++.+.++|++|+.|=.-.=+
T Consensus 41 ~~~~~A~~-~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~~~~il~ 93 (190)
T TIGR00639 41 YGLERAAQ-AGIPTFVLSLKDFPSREAFDQAIIEELRAHEVDLVVLAGFMRILG 93 (190)
T ss_pred hHHHHHHH-cCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEeCcchhCC
Confidence 33567777 888766432211 12334444455555444699999988554433
No 111
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=44.96 E-value=46 Score=32.36 Aligned_cols=67 Identities=18% Similarity=0.110 Sum_probs=47.0
Q ss_pred CcHHHHHHHHHcccCCEEEEEE-----EcCCC-H------HHHHHHHHHHHhCCCCcEEEEeCCccC-----------CC
Q psy7342 218 KSGPLLAQLLQEDFQHAHILKT-----CVPDE-M------EEIKDKLKYWVDQSKVDLIFTSGGTGM-----------SP 274 (338)
Q Consensus 218 sN~~~L~~lL~~~~G~~v~~~~-----iV~Dd-~------e~I~~aL~~a~~~~~~DlVITTGGts~-----------G~ 274 (338)
-|+.+++..|++ .|.+..... ++.|+ + ....+.+.+++.+ .+++|++|..|. |-
T Consensus 122 lSa~ll~~~L~~-~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~--~~v~Vv~Gf~g~~~~G~~ttLgRgg 198 (288)
T cd04245 122 LNAQLMAAYLNY-QGIDARYVIPKDAGLVVTDEPGNAQILPESYQKIKKLRDS--DEKLVIPGFYGYSKNGDIKTFSRGG 198 (288)
T ss_pred HHHHHHHHHHHH-CCCCeEEEcHHHCceeecCCccccccchhhHHHHHHHHhC--CCEEEEeCccccCCCCCEEEcCCCc
Confidence 477889999999 998766554 44333 2 1244556666665 589999999854 57
Q ss_pred CCChHHHHHhccc
Q psy7342 275 RDVTPEAMNHLID 287 (338)
Q Consensus 275 ~D~t~eal~~l~~ 287 (338)
.|++.-.+....+
T Consensus 199 SD~tAal~A~~l~ 211 (288)
T cd04245 199 SDITGAILARGFQ 211 (288)
T ss_pred hHHHHHHHHHHcC
Confidence 8999888877543
No 112
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=44.92 E-value=53 Score=32.20 Aligned_cols=54 Identities=15% Similarity=0.104 Sum_probs=35.4
Q ss_pred cHHHHHHHHHcccCCEEEEEEEcCCC-HHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 219 SGPLLAQLLQEDFQHAHILKTCVPDE-MEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 219 N~~~L~~lL~~~~G~~v~~~~iV~Dd-~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
-...+...|++ .|.++.+..+.++- .+.+.+.++.+.+ .++|+||-.||-|+-+
T Consensus 37 ~~~~v~~~L~~-~~i~~~~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIavGGGS~iD 91 (351)
T cd08170 37 VGAKIEESLAA-AGIDARFEVFGGECTRAEIERLAEIARD-NGADVVIGIGGGKTLD 91 (351)
T ss_pred HHHHHHHHHHh-CCCeEEEEEeCCcCCHHHHHHHHHHHhh-cCCCEEEEecCchhhH
Confidence 34456677787 88877644454433 3456666555544 3699999999987755
No 113
>PRK10780 periplasmic chaperone; Provisional
Probab=44.90 E-value=35 Score=30.06 Aligned_cols=39 Identities=18% Similarity=0.396 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhCCCCcEEEEeCCccC--CCCCChHHHHHhc
Q psy7342 247 EIKDKLKYWVDQSKVDLIFTSGGTGM--SPRDVTPEAMNHL 285 (338)
Q Consensus 247 ~I~~aL~~a~~~~~~DlVITTGGts~--G~~D~t~eal~~l 285 (338)
.|.++|.......++|+|+..+++=. ...|+|.++++.+
T Consensus 124 ki~~ai~~vak~~gy~~Vld~~~v~Y~~~~~DIT~~Vik~l 164 (165)
T PRK10780 124 RIQTAVKSVANKQGYDLVVDANAVAYNSSDKDITADVLKQV 164 (165)
T ss_pred HHHHHHHHHHHHcCCeEEEeCCceeeeCCCCCchHHHHHhh
Confidence 34444444445567999998766544 4479999998764
No 114
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=44.88 E-value=61 Score=28.71 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=54.7
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcC--CCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVP--DEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRD 276 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~--Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D 276 (338)
|+|+||.-|+.= -.-..-....|++ +|..+. ..+.. -.++.+.+.++++-.+ ++|++|+..|.+ -
T Consensus 1 p~V~Ii~gs~SD------~~~~~~a~~~L~~-~gi~~~-~~V~saHR~p~~l~~~~~~~~~~-~~~viIa~AG~~----a 67 (150)
T PF00731_consen 1 PKVAIIMGSTSD------LPIAEEAAKTLEE-FGIPYE-VRVASAHRTPERLLEFVKEYEAR-GADVIIAVAGMS----A 67 (150)
T ss_dssp -EEEEEESSGGG------HHHHHHHHHHHHH-TT-EEE-EEE--TTTSHHHHHHHHHHTTTT-TESEEEEEEESS-----
T ss_pred CeEEEEeCCHHH------HHHHHHHHHHHHH-cCCCEE-EEEEeccCCHHHHHHHHHHhccC-CCEEEEEECCCc----c
Confidence 678888755420 1123455678888 997653 33433 5788898888887553 489999887764 3
Q ss_pred ChHHHHHhcccccc----------CChHHHHHHhcCCCC
Q psy7342 277 VTPEAMNHLIDKKV----------PCIEHIIQTEGLKVT 305 (338)
Q Consensus 277 ~t~eal~~l~~~~l----------pG~~e~~~~~s~~~~ 305 (338)
..+-++..+-.+.+ .|+.-.+..+.|..+
T Consensus 68 ~Lpgvva~~t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g 106 (150)
T PF00731_consen 68 ALPGVVASLTTLPVIGVPVSSGYLGGLDSLLSIVQMPSG 106 (150)
T ss_dssp -HHHHHHHHSSS-EEEEEE-STTTTTHHHHHHHHT--TT
T ss_pred cchhhheeccCCCEEEeecCcccccCcccHHHHHhccCC
Confidence 56888877655433 344445555655543
No 115
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=44.38 E-value=52 Score=29.85 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=37.3
Q ss_pred ecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc-CCCCCChHHHHHh
Q psy7342 216 EDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG-MSPRDVTPEAMNH 284 (338)
Q Consensus 216 ~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts-~G~~D~t~eal~~ 284 (338)
+||-.+.|..+|++ .|+++.....-..+.+.+ .+ ..+|.||.+||=+ +.+.+...+.++.
T Consensus 8 ~dsft~nl~~~l~~-~g~~v~v~~~~~~~~~~~----~~----~~~d~iIlsgGP~~p~~~~~~~~~i~~ 68 (195)
T PRK07649 8 YDSFTFNLVQFLGE-LGQELVVKRNDEVTISDI----EN----MKPDFLMISPGPCSPNEAGISMEVIRY 68 (195)
T ss_pred CCccHHHHHHHHHH-CCCcEEEEeCCCCCHHHH----hh----CCCCEEEECCCCCChHhCCCchHHHHH
Confidence 58889999999999 998775444222223332 21 1379999999974 3333344455544
No 116
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=44.06 E-value=32 Score=29.63 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=35.4
Q ss_pred CeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 213 KESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 213 G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
|.+.|-...++..+|+. .||++++.++--. ++++.++.. + +++|+|-.|.
T Consensus 9 gD~HdiGkniv~~~L~~-~GfeVidLG~~v~-~e~~v~aa~---~-~~adiVglS~ 58 (128)
T cd02072 9 SDCHAVGNKILDHAFTE-AGFNVVNLGVLSP-QEEFIDAAI---E-TDADAILVSS 58 (128)
T ss_pred CchhHHHHHHHHHHHHH-CCCEEEECCCCCC-HHHHHHHHH---H-cCCCEEEEec
Confidence 55677778899999999 9999999997333 333333332 2 2489998877
No 117
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=44.05 E-value=70 Score=28.53 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=37.5
Q ss_pred ecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc-CCCCCChHHHHHh
Q psy7342 216 EDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG-MSPRDVTPEAMNH 284 (338)
Q Consensus 216 ~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts-~G~~D~t~eal~~ 284 (338)
+||-.+.|..+|++ .|+++. +++.+...+.+ +++. ++|.||.+||=+ +.+.....+.++.
T Consensus 8 ~dsf~~nl~~~l~~-~~~~~~---v~~~~~~~~~~-~~~~----~~~~iilsgGP~~~~~~~~~~~~i~~ 68 (191)
T PRK06774 8 YDSFTYNLYQYFCE-LGTEVM---VKRNDELQLTD-IEQL----APSHLVISPGPCTPNEAGISLAVIRH 68 (191)
T ss_pred CCchHHHHHHHHHH-CCCcEE---EEeCCCCCHHH-HHhc----CCCeEEEcCCCCChHhCCCchHHHHH
Confidence 58899999999999 998775 44533212211 2221 379999999985 3444444444443
No 118
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=43.71 E-value=99 Score=29.22 Aligned_cols=78 Identities=13% Similarity=0.009 Sum_probs=44.1
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCC
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDV 277 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~ 277 (338)
+.+|+|+.-|+.. ...+.=.++..+...|++ .|+++.....-.+..+ .+ ...++|+|+..-+...+....
T Consensus 4 ~~~v~~~~g~~~~-~~~~~~~s~~~i~~al~~-~g~~v~~i~~~~~~~~----~~----~~~~~D~v~~~~~g~~~~~~~ 73 (304)
T PRK01372 4 FGKVAVLMGGTSA-EREVSLNSGAAVLAALRE-AGYDAHPIDPGEDIAA----QL----KELGFDRVFNALHGRGGEDGT 73 (304)
T ss_pred CcEEEEEeCCCCC-CceEeHHhHHHHHHHHHH-CCCEEEEEecCcchHH----Hh----ccCCCCEEEEecCCCCCCccH
Confidence 4589988866432 111211256888889999 9999876654333222 22 222489999763322344445
Q ss_pred hHHHHHhc
Q psy7342 278 TPEAMNHL 285 (338)
Q Consensus 278 t~eal~~l 285 (338)
.+..++.+
T Consensus 74 ~~~~le~~ 81 (304)
T PRK01372 74 IQGLLELL 81 (304)
T ss_pred HHHHHHHc
Confidence 55555444
No 119
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=42.12 E-value=1.1e+02 Score=27.60 Aligned_cols=64 Identities=19% Similarity=0.071 Sum_probs=45.1
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccC
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGM 272 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~ 272 (338)
+++|-+.+.. |+..|--..+++.+|++ .|+++++.+ ..=..+.|.+++.+. ++|+|-.|.-...
T Consensus 82 ~~~vl~~~~~-----gd~H~lG~~~v~~~l~~-~G~~vi~lG-~~~p~~~l~~~~~~~----~~d~v~lS~~~~~ 145 (201)
T cd02070 82 KGKVVIGTVE-----GDIHDIGKNLVATMLEA-NGFEVIDLG-RDVPPEEFVEAVKEH----KPDILGLSALMTT 145 (201)
T ss_pred CCeEEEEecC-----CccchHHHHHHHHHHHH-CCCEEEECC-CCCCHHHHHHHHHHc----CCCEEEEeccccc
Confidence 4666555543 55677778899999999 999999888 223456777776652 4899988764443
No 120
>PRK00805 putative deoxyhypusine synthase; Provisional
Probab=41.55 E-value=63 Score=32.23 Aligned_cols=65 Identities=11% Similarity=0.156 Sum_probs=41.1
Q ss_pred HHHHHHHHHcccCCEEEEEEEcCC-CHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhccccccCC
Q psy7342 220 GPLLAQLLQEDFQHAHILKTCVPD-EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVPC 292 (338)
Q Consensus 220 ~~~L~~lL~~~~G~~v~~~~iV~D-d~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l~~~~lpG 292 (338)
...+.++++. .++.+ ..+.... -+..+++.|..++++.-+|+||||||. +..+.++.++.....|
T Consensus 35 ~~i~~~Ml~d-~~~~i-fL~~tg~mvsaGlr~~i~~Li~~g~VD~iVTTgan------i~hD~~~~lg~~~y~g 100 (329)
T PRK00805 35 VRVWTEMLKD-PDNTI-FMGLSGAMVPAGMRKIIKWLIRNRYVDVLVSTGAN------IFHDIHEALGFKHYKG 100 (329)
T ss_pred HHHHHHHHhC-CCCeE-EEEeccchHHHHHHHHHHHHHHcCCeeEEEeCCCc------hHHHHHHHcCCCeecc
Confidence 3455566655 56665 3333222 356789999999988779999999987 3444555555343333
No 121
>PRK12342 hypothetical protein; Provisional
Probab=41.24 E-value=2.5e+02 Score=26.87 Aligned_cols=102 Identities=10% Similarity=0.002 Sum_probs=69.1
Q ss_pred CceeChhcHHHHHhhCCCceeEeecCceEEEEecCCCccCCeeecCcHH-HHHHHHHcccCCEEEEE----EEcCCCHHH
Q psy7342 173 TQVIRPDTNHAQRCSTSMKYWELVRSTCHLLALVSDRCFNKESEDKSGP-LLAQLLQEDFQHAHILK----TCVPDEMEE 247 (338)
Q Consensus 173 G~~l~p~~i~~lLas~Gi~~v~V~~~prVaIIstGdEl~~G~i~DsN~~-~L~~lL~~~~G~~v~~~----~iV~Dd~e~ 247 (338)
...++|.|.+++-+++-+++ + .-+|.+++.|.. +.... .+...|. +|.+-... ..-..|.-.
T Consensus 30 ~~~iNp~D~~AlE~AlrLk~---~-g~~Vtvls~Gp~-------~a~~~~l~r~ala--mGaD~avli~d~~~~g~D~~a 96 (254)
T PRK12342 30 EAKISQFDLNAIEAASQLAT---D-GDEIAALTVGGS-------LLQNSKVRKDVLS--RGPHSLYLVQDAQLEHALPLD 96 (254)
T ss_pred CccCChhhHHHHHHHHHHhh---c-CCEEEEEEeCCC-------hHhHHHHHHHHHH--cCCCEEEEEecCccCCCCHHH
Confidence 34689999988888888773 2 358899999975 11122 3354554 46542111 112246666
Q ss_pred HHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhccc
Q psy7342 248 IKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLID 287 (338)
Q Consensus 248 I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l~~ 287 (338)
...+|..++++.++|+|++-=.++-+..-.++..+.++++
T Consensus 97 ta~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg 136 (254)
T PRK12342 97 TAKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQ 136 (254)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhC
Confidence 6777777777656999999888888888999999987654
No 122
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=40.88 E-value=69 Score=30.69 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=37.2
Q ss_pred CceEEEEec-CCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCC
Q psy7342 198 STCHLLALV-SDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPR 275 (338)
Q Consensus 198 ~prVaIIst-GdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~ 275 (338)
++||+||.. |.+. | .-+...+++ .|+++....+ .|..+ ....+++ +|.||..||.|.++.
T Consensus 3 ~~kvaVl~~pG~n~------d---~e~~~Al~~-aG~~v~~v~~-~~~~~-----~~~~l~~--~DgLvipGGfs~gD~ 63 (261)
T PRK01175 3 SIRVAVLRMEGTNC------E---DETVKAFRR-LGVEPEYVHI-NDLAA-----ERKSVSD--YDCLVIPGGFSAGDY 63 (261)
T ss_pred CCEEEEEeCCCCCC------H---HHHHHHHHH-CCCcEEEEee-ccccc-----cccchhh--CCEEEECCCCCcccc
Confidence 578999986 4431 1 233678888 9998765543 22110 1112344 899999999877663
No 123
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.44 E-value=1.2e+02 Score=27.49 Aligned_cols=49 Identities=4% Similarity=0.034 Sum_probs=34.8
Q ss_pred cCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 217 DKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 217 DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
..-...+...+++ .|+++..... .++++.-.+.|+.+... ++|.||.++
T Consensus 15 ~~~~~~i~~~~~~-~g~~v~~~~~-~~~~~~~~~~i~~~~~~-~~Dgiii~~ 63 (282)
T cd06318 15 AALTEAAKAHAKA-LGYELISTDA-QGDLTKQIADVEDLLTR-GVNVLIINP 63 (282)
T ss_pred HHHHHHHHHHHHH-cCCEEEEEcC-CCCHHHHHHHHHHHHHc-CCCEEEEec
Confidence 3344456677788 9998876543 45777777788888776 599999865
No 124
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=40.20 E-value=53 Score=29.38 Aligned_cols=51 Identities=16% Similarity=0.318 Sum_probs=33.5
Q ss_pred ecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 216 EDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 216 ~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
+|+-...+...|++ .|+.+....... +.+.+ .+.++. +|.||.+||-+..+
T Consensus 17 ~~~~~~~~~~~l~~-~G~~~~iv~~~~-~~~~~----~~~l~~--~dglvl~GG~~~~~ 67 (189)
T cd01745 17 RDYLNQYYVDAVRK-AGGLPVLLPPVD-DEEDL----EQYLEL--LDGLLLTGGGDVDP 67 (189)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEeCCCC-ChHHH----HHHHhh--CCEEEECCCCCCCh
Confidence 67777788889999 998765443322 22233 333444 79999999987653
No 125
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=39.74 E-value=1.3e+02 Score=26.66 Aligned_cols=69 Identities=13% Similarity=0.086 Sum_probs=42.9
Q ss_pred EEecCCCccCCeeecC---c--HHHHHHHHHcc---cCCEEEEEEEcCCCH------HHHHHHHH-HHHhCCCCcEEEEe
Q psy7342 203 LALVSDRCFNKESEDK---S--GPLLAQLLQED---FQHAHILKTCVPDEM------EEIKDKLK-YWVDQSKVDLIFTS 267 (338)
Q Consensus 203 IIstGdEl~~G~i~Ds---N--~~~L~~lL~~~---~G~~v~~~~iV~Dd~------e~I~~aL~-~a~~~~~~DlVITT 267 (338)
|+..||.+..|.-... + ...++..|.+. .++++...++-.|.- ..+.+.+. ..+...++|+|+..
T Consensus 2 iv~~GDSiT~G~~~~~~~~~~w~~~l~~~l~~~~~~~~~~v~N~Gi~G~t~~~~~~~~~~l~r~~~~v~~~~~p~~vii~ 81 (204)
T cd01830 2 VVALGDSITDGRGSTPDANNRWPDLLAARLAARAGTRGIAVLNAGIGGNRLLADGLGPSALARFDRDVLSQPGVRTVIIL 81 (204)
T ss_pred EEEEecccccCCCCCCCCCCcCHHHHHHHHHhccCCCCcEEEECCccCcccccCCCChHHHHHHHHHHhcCCCCCEEEEe
Confidence 6778999987654322 2 44555555441 368899999988864 24444444 34443347888888
Q ss_pred CCcc
Q psy7342 268 GGTG 271 (338)
Q Consensus 268 GGts 271 (338)
.|+=
T Consensus 82 ~G~N 85 (204)
T cd01830 82 EGVN 85 (204)
T ss_pred cccc
Confidence 8763
No 126
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=39.65 E-value=58 Score=28.14 Aligned_cols=66 Identities=11% Similarity=0.033 Sum_probs=40.5
Q ss_pred EEecCCCccCCeeecCc-HHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 203 LALVSDRCFNKESEDKS-GPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 203 IIstGdEl~~G~i~DsN-~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
|+-.||.+..|.-..+. .-+...+.+. ++.++...++-.|..-. ..+.+.+...++|+||...|+=
T Consensus 2 iv~~GDSit~G~g~~~~~~~~~~~~~~~-~~~~v~N~g~~G~~~~~--~~~~~~~~~~~pd~vii~~G~N 68 (177)
T cd01844 2 WVFYGTSISQGACASRPGMAWTAILARR-LGLEVINLGFSGNARLE--PEVAELLRDVPADLYIIDCGPN 68 (177)
T ss_pred EEEEeCchhcCcCCCCCCCcHHHHHHHH-hCCCeEEeeecccccch--HHHHHHHHhcCCCEEEEEeccC
Confidence 56789999877544322 2333334445 78899999998875321 1233333333589999877765
No 127
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=39.61 E-value=81 Score=27.03 Aligned_cols=68 Identities=12% Similarity=0.045 Sum_probs=42.7
Q ss_pred EEecCCCccCCeeec---Cc----HHHHHHHHHcc-cCCEEEEEEEcCCCHHH-HHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 203 LALVSDRCFNKESED---KS----GPLLAQLLQED-FQHAHILKTCVPDEMEE-IKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 203 IIstGdEl~~G~i~D---sN----~~~L~~lL~~~-~G~~v~~~~iV~Dd~e~-I~~aL~~a~~~~~~DlVITTGGts 271 (338)
|+..||.+..|.-.+ .. ...+...|.+. .++.+...++-.+.... +...+...+.. ++|+||..-|+=
T Consensus 2 i~~~GDSit~G~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~N~g~~G~~~~~~~~~~~~~~~~~-~~d~vii~~G~N 78 (185)
T cd01832 2 YVALGDSITEGVGDPVPDGGYRGWADRLAAALAAADPGIEYANLAVRGRRTAQILAEQLPAALAL-RPDLVTLLAGGN 78 (185)
T ss_pred eeEecchhhcccCCCCCCCccccHHHHHHHHhcccCCCceEeeccCCcchHHHHHHHHHHHHHhc-CCCEEEEecccc
Confidence 677899888665432 22 23333333320 26788889888887664 44556665554 589999887763
No 128
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=39.49 E-value=64 Score=27.47 Aligned_cols=60 Identities=10% Similarity=-0.035 Sum_probs=42.2
Q ss_pred EEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 203 LALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 203 IIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
|+-.||.+..|--. .+ .. . .+.++...++-.+....+.+.++..+...++|+|+...|+=
T Consensus 3 iv~~GdS~t~~~~~-~~------~~-~-~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~pd~v~i~~G~N 62 (174)
T cd01841 3 IVFIGDSLFEGWPL-YE------AE-G-KGKTVNNLGIAGISSRQYLEHIEPQLIQKNPSKVFLFLGTN 62 (174)
T ss_pred EEEEcchhhhcCch-hh------hc-c-CCCeEEecccccccHHHHHHHHHHHHHhcCCCEEEEEeccc
Confidence 56678887755321 11 11 4 67889999999999888888885555444689999888774
No 129
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=39.06 E-value=30 Score=28.98 Aligned_cols=12 Identities=8% Similarity=-0.100 Sum_probs=9.4
Q ss_pred EEEecCCCccCC
Q psy7342 202 LLALVSDRCFNK 213 (338)
Q Consensus 202 aIIstGdEl~~G 213 (338)
.|+..||.+..|
T Consensus 2 ~~~~~Gds~~~g 13 (157)
T cd01833 2 RIMPLGDSITWG 13 (157)
T ss_pred ceeecCCceeec
Confidence 467789988877
No 130
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=38.98 E-value=1.2e+02 Score=28.68 Aligned_cols=67 Identities=10% Similarity=0.133 Sum_probs=35.1
Q ss_pred cCceEEEEecCCCccCCeeec-CcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC-ccC
Q psy7342 197 RSTCHLLALVSDRCFNKESED-KSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG-TGM 272 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~D-sN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG-ts~ 272 (338)
.||.|+|..-... ..+...+ .+..++ ..+.+ .|+..+......++.+.+.+. ++. +|-||.+|| .++
T Consensus 6 ~~P~Igi~~~~~~-~~~~~~~~~~~~y~-~~i~~-aGg~pv~lp~~~~~~~~~~~~----l~~--~DGlil~GG~~dv 74 (254)
T PRK11366 6 NNPVIGVVMCRNR-LKGHATQTLQEKYL-NAIIH-AGGLPIALPHALAEPSLLEQL----LPK--LDGIYLPGSPSNV 74 (254)
T ss_pred CCCEEEEeCCCcc-cCcchHHHHHHHHH-HHHHH-CCCEEEEecCCCCCHHHHHHH----HHh--CCEEEeCCCCCCc
Confidence 5799999652222 1221122 122333 34555 677655444332344444433 344 799999998 566
No 131
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=38.85 E-value=97 Score=27.14 Aligned_cols=67 Identities=13% Similarity=0.101 Sum_probs=42.8
Q ss_pred EEecCCCccCCeee----cCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHH--HHHHHHhCC-CCcEEEEeCCcc
Q psy7342 203 LALVSDRCFNKESE----DKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKD--KLKYWVDQS-KVDLIFTSGGTG 271 (338)
Q Consensus 203 IIstGdEl~~G~i~----DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~--aL~~a~~~~-~~DlVITTGGts 271 (338)
|+..||.+..|.-. +.-...|...+.+ ++.+...++-.+.-..+.. .+...+... ++|+||...|+=
T Consensus 3 i~~~GDS~t~G~~~~~~~~~w~~~l~~~~~~--~~~v~N~gi~G~ts~~~~~~~~~~~~l~~~~~pdlVii~~G~N 76 (198)
T cd01821 3 IFLAGDSTVADYDPGAPQAGWGQALPQYLDT--GITVVNHAKGGRSSRSFRDEGRWDAILKLIKPGDYVLIQFGHN 76 (198)
T ss_pred EEEEecCCcccCCCCCCCCChHHHHHHHhCC--CCEEEeCCCCCccHHHHHhCCcHHHHHhhCCCCCEEEEECCCC
Confidence 55669999887654 3334445555432 6889999998887665432 333333321 379999998864
No 132
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=38.79 E-value=91 Score=31.06 Aligned_cols=69 Identities=17% Similarity=0.346 Sum_probs=53.8
Q ss_pred CeeecCcHHHHHHHHHcccCCEEEEEEEcCCC-------HHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhc
Q psy7342 213 KESEDKSGPLLAQLLQEDFQHAHILKTCVPDE-------MEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHL 285 (338)
Q Consensus 213 G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd-------~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l 285 (338)
+.+.|.-+.+-....++ +|.+.+....+.-| +.+-.+.+++.++. +|+=|..||+|--.+| |+++++.
T Consensus 146 ~dVmedP~eWArk~Vk~-fgadmvTiHlIsTdPki~D~p~~EAak~lEdvLqA--VdvPiiiGGSGnpeKD--peVleka 220 (403)
T COG2069 146 DDVMEDPGEWARKCVKK-FGADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQA--VDVPIIIGGSGNPEKD--PEVLEKA 220 (403)
T ss_pred HHHhhCHHHHHHHHHHH-hCCceEEEEeecCCccccCCCHHHHHHHHHHHHHh--cCcCEEecCCCCCccC--HHHHHHH
Confidence 56678889999999999 99986666554432 45677788888877 8999999999999999 5666654
Q ss_pred c
Q psy7342 286 I 286 (338)
Q Consensus 286 ~ 286 (338)
.
T Consensus 221 A 221 (403)
T COG2069 221 A 221 (403)
T ss_pred H
Confidence 3
No 133
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=38.61 E-value=86 Score=28.82 Aligned_cols=68 Identities=16% Similarity=0.077 Sum_probs=37.8
Q ss_pred cCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCC-hHHHHHhccccccC
Q psy7342 217 DKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDV-TPEAMNHLIDKKVP 291 (338)
Q Consensus 217 DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~-t~eal~~l~~~~lp 291 (338)
|+-...+..+|++ .|+.+.....-.++.+. +.+.++. +|-||.+||-+--.+|- ..+.++.+.+..+|
T Consensus 10 ~~~~~~~~~~l~~-~G~~~~~~~~~~~~~~~----~~~~~~~--~dgliisGGp~~~~~~~~~~~~i~~~~~~~~P 78 (214)
T PRK07765 10 DSFVFNLVQYLGQ-LGVEAEVWRNDDPRLAD----EAAVAAQ--FDGVLLSPGPGTPERAGASIDMVRACAAAGTP 78 (214)
T ss_pred CcHHHHHHHHHHH-cCCcEEEEECCCcCHHH----HHHhhcC--CCEEEECCCCCChhhcchHHHHHHHHHhCCCC
Confidence 3444567889999 99887665443332222 2223344 89999999976432222 22344444444444
No 134
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=38.58 E-value=68 Score=29.14 Aligned_cols=73 Identities=11% Similarity=0.115 Sum_probs=45.9
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEE-EeCCccCCCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIF-TSGGTGMSPR 275 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVI-TTGGts~G~~ 275 (338)
+..+|+++++..- +-.....|+.+.+. .|..+.......|..+.+++++++.-++ ++|+|+ =|-|-+..+.
T Consensus 28 ~~~~v~lis~D~~------R~ga~eQL~~~a~~-l~vp~~~~~~~~~~~~~~~~~l~~~~~~-~~D~vlIDT~Gr~~~d~ 99 (196)
T PF00448_consen 28 KGKKVALISADTY------RIGAVEQLKTYAEI-LGVPFYVARTESDPAEIAREALEKFRKK-GYDLVLIDTAGRSPRDE 99 (196)
T ss_dssp TT--EEEEEESTS------STHHHHHHHHHHHH-HTEEEEESSTTSCHHHHHHHHHHHHHHT-TSSEEEEEE-SSSSTHH
T ss_pred ccccceeecCCCC------CccHHHHHHHHHHH-hccccchhhcchhhHHHHHHHHHHHhhc-CCCEEEEecCCcchhhH
Confidence 3678999996432 23345667778888 8877666555556677788888887654 478776 4555555443
Q ss_pred CC
Q psy7342 276 DV 277 (338)
Q Consensus 276 D~ 277 (338)
+.
T Consensus 100 ~~ 101 (196)
T PF00448_consen 100 EL 101 (196)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 135
>PRK13566 anthranilate synthase; Provisional
Probab=38.53 E-value=1.3e+02 Score=33.18 Aligned_cols=75 Identities=19% Similarity=0.165 Sum_probs=46.7
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRD 276 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D 276 (338)
+.++|.||--+ |++...+..+|++ .|+++..+..-.+ .+.+ .. . .+|.||.+||-|. +.|
T Consensus 525 ~g~~IlvID~~---------dsf~~~l~~~Lr~-~G~~v~vv~~~~~-~~~~----~~--~--~~DgVVLsgGpgs-p~d 584 (720)
T PRK13566 525 EGKRVLLVDHE---------DSFVHTLANYFRQ-TGAEVTTVRYGFA-EEML----DR--V--NPDLVVLSPGPGR-PSD 584 (720)
T ss_pred CCCEEEEEECC---------CchHHHHHHHHHH-CCCEEEEEECCCC-hhHh----hh--c--CCCEEEECCCCCC-hhh
Confidence 44567666644 4678899999999 9998765544322 2222 11 1 3899999999865 333
Q ss_pred -ChHHHHHhccccccC
Q psy7342 277 -VTPEAMNHLIDKKVP 291 (338)
Q Consensus 277 -~t~eal~~l~~~~lp 291 (338)
-..+.++.+.+..+|
T Consensus 585 ~~~~~lI~~a~~~~iP 600 (720)
T PRK13566 585 FDCKATIDAALARNLP 600 (720)
T ss_pred CCcHHHHHHHHHCCCc
Confidence 245555655554444
No 136
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=38.51 E-value=1.7e+02 Score=28.87 Aligned_cols=66 Identities=12% Similarity=0.092 Sum_probs=47.6
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
-+|+||...++.. ......+...+++ .|.++.....++.+...+...|.++.....+|+||..+-.
T Consensus 133 ~~vaii~~~~~~~-----~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~d~~~~L~~lk~~~~~~viv~~~~~ 198 (382)
T cd06371 133 AHVAIVSSPQDIW-----VETAQKLASALRA-HGLPVGLVTSMGPDEKGAREALKKVRSADRVRVVIMCMHS 198 (382)
T ss_pred eEEEEEEecccch-----HHHHHHHHHHHHH-CCCcEEEEEEecCCHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 4677887665522 2346678888888 9998887666776777888999988765336999987654
No 137
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=38.33 E-value=64 Score=29.79 Aligned_cols=62 Identities=21% Similarity=0.233 Sum_probs=43.1
Q ss_pred eecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCC-CCCChHHHHHhc
Q psy7342 215 SEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMS-PRDVTPEAMNHL 285 (338)
Q Consensus 215 i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G-~~D~t~eal~~l 285 (338)
-+||-.+.|..++++ .|.++. ++++|.-.+. .++ ..++|.||.|=|=|.- +.....++++++
T Consensus 9 NyDSFtyNLv~yl~~-lg~~v~---V~rnd~~~~~-~~~----~~~pd~iviSPGPG~P~d~G~~~~~i~~~ 71 (191)
T COG0512 9 NYDSFTYNLVQYLRE-LGAEVT---VVRNDDISLE-LIE----ALKPDAIVISPGPGTPKDAGISLELIRRF 71 (191)
T ss_pred CccchHHHHHHHHHH-cCCceE---EEECCccCHH-HHh----hcCCCEEEEcCCCCChHHcchHHHHHHHh
Confidence 379999999999999 996554 5555522222 222 2237999988877764 555689999887
No 138
>PLN02335 anthranilate synthase
Probab=37.93 E-value=1.1e+02 Score=28.39 Aligned_cols=72 Identities=14% Similarity=0.088 Sum_probs=43.7
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc-CCCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG-MSPR 275 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts-~G~~ 275 (338)
+.++|.||-- +|+-.+.|..+|++ .|+++..+ +.|.-.+.+ +.. .++|.||.+||=| +.+.
T Consensus 17 ~~~~ilviD~---------~dsft~~i~~~L~~-~g~~~~v~---~~~~~~~~~-~~~----~~~d~iVisgGPg~p~d~ 78 (222)
T PLN02335 17 QNGPIIVIDN---------YDSFTYNLCQYMGE-LGCHFEVY---RNDELTVEE-LKR----KNPRGVLISPGPGTPQDS 78 (222)
T ss_pred ccCcEEEEEC---------CCCHHHHHHHHHHH-CCCcEEEE---ECCCCCHHH-HHh----cCCCEEEEcCCCCChhhc
Confidence 4456666643 35788999999999 99876644 332111111 111 1378899888876 5544
Q ss_pred CChHHHHHhcc
Q psy7342 276 DVTPEAMNHLI 286 (338)
Q Consensus 276 D~t~eal~~l~ 286 (338)
|...+.+.++.
T Consensus 79 ~~~~~~~~~~~ 89 (222)
T PLN02335 79 GISLQTVLELG 89 (222)
T ss_pred cchHHHHHHhC
Confidence 55666665553
No 139
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=37.93 E-value=71 Score=31.66 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=35.4
Q ss_pred cHHHHHHHHHcccCCEEEEEEEcCCC-HHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 219 SGPLLAQLLQEDFQHAHILKTCVPDE-MEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 219 N~~~L~~lL~~~~G~~v~~~~iV~Dd-~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
....+...|++ .|.++....+-++- .+.+.+.++.+.+ .++|+||-.||-|+.+
T Consensus 44 ~~~~v~~~l~~-~~~~~~~~~~~~ep~~~~v~~~~~~~~~-~~~d~IIavGGGsv~D 98 (366)
T PRK09423 44 VGDRVEASLKE-AGLTVVFEVFNGECSDNEIDRLVAIAEE-NGCDVVIGIGGGKTLD 98 (366)
T ss_pred HHHHHHHHHHh-CCCeEEEEEeCCCCCHHHHHHHHHHHHh-cCCCEEEEecChHHHH
Confidence 45667777888 88877544443333 3455555555444 3699999999988765
No 140
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=37.74 E-value=1.2e+02 Score=27.15 Aligned_cols=65 Identities=12% Similarity=-0.030 Sum_probs=46.3
Q ss_pred cCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhccc
Q psy7342 217 DKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLID 287 (338)
Q Consensus 217 DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l~~ 287 (338)
......+.+.+++ +|+++.....-..|.+.-.+.+++++.+ ++|.||++.-.+- -+.+.++++.+
T Consensus 14 ~~~~~g~~~~a~~-~g~~~~~~~~~~~d~~~q~~~i~~~i~~-~~d~Iiv~~~~~~----~~~~~l~~~~~ 78 (257)
T PF13407_consen 14 QQVIKGAKAAAKE-LGYEVEIVFDAQNDPEEQIEQIEQAISQ-GVDGIIVSPVDPD----SLAPFLEKAKA 78 (257)
T ss_dssp HHHHHHHHHHHHH-HTCEEEEEEESTTTHHHHHHHHHHHHHT-TESEEEEESSSTT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCEEEEeCCCCCCHHHHHHHHHHHHHh-cCCEEEecCCCHH----HHHHHHHHHhh
Confidence 3345567788888 9999887666677778888999999987 5999997765543 34444554433
No 141
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=37.54 E-value=86 Score=30.89 Aligned_cols=48 Identities=8% Similarity=0.235 Sum_probs=32.3
Q ss_pred HHHHHHHHcccCCEEEEEEEcCC-CHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 221 PLLAQLLQEDFQHAHILKTCVPD-EMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~iV~D-d~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
..+..+++. -++.+ ..+.... -+..+++.|..++++.-.|+||||||.
T Consensus 35 ~i~~~m~~~-~~~~i-fLt~tg~mvsaGlr~ii~~Li~~g~Vd~ivtTgan 83 (301)
T TIGR00321 35 KIWKEMCFD-EEITI-FMGYAGNLVPSGMREIIAYLIQHGMIDALVTTGAN 83 (301)
T ss_pred HHHHHHHhC-CCCeE-EEEeccccchhhHHHHHHHHHHcCCeeEEEeCCCc
Confidence 344555544 44554 3333222 356789999999988779999999986
No 142
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=37.48 E-value=89 Score=33.27 Aligned_cols=80 Identities=10% Similarity=-0.024 Sum_probs=56.6
Q ss_pred CCCceeEeecCceEEEEecCCCccCCee-ecCcHHHHHHHHHcccCCEEEEEEEc--CC--------------CHHHHHH
Q psy7342 188 TSMKYWELVRSTCHLLALVSDRCFNKES-EDKSGPLLAQLLQEDFQHAHILKTCV--PD--------------EMEEIKD 250 (338)
Q Consensus 188 ~Gi~~v~V~~~prVaIIstGdEl~~G~i-~DsN~~~L~~lL~~~~G~~v~~~~iV--~D--------------d~e~I~~ 250 (338)
.|++.-. ++||.|+|+++-+|+.++.. .+.-...+++-+++ .|.....+.++ .| .+|.|..
T Consensus 2 ~G~~~ed-~~kP~IgI~ns~~e~~pch~hl~~l~~~vk~gv~~-aGg~p~ef~ti~v~Dgi~~g~~GM~ySL~SRelIAd 79 (535)
T TIGR00110 2 TGFTDED-FGKPFIGVANSYTTIVPGHMHLRDLAQAVKEGIEA-AGGVAFEFNTIAVCDGIAMGHEGMKYSLPSREIIAD 79 (535)
T ss_pred CCCChHH-hCCCEEEEEeccccCcCchhhHHHHHHHHHHHHHH-cCCeeEEecCCcCccccccCCcccchhhhhHHHHHH
Confidence 4555444 57999999999999998743 45556677777777 77765555432 22 3778888
Q ss_pred HHHHHHhCCCCcEEEEeCC
Q psy7342 251 KLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 251 aL~~a~~~~~~DlVITTGG 269 (338)
.++..+..+.+|-+|..||
T Consensus 80 siE~~~~~~~~Dg~v~l~~ 98 (535)
T TIGR00110 80 SVETMVNAHRFDGLVCIPS 98 (535)
T ss_pred HHHHHHhcCCcceEEEecc
Confidence 8888887666787777665
No 143
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=37.27 E-value=70 Score=30.32 Aligned_cols=76 Identities=14% Similarity=0.222 Sum_probs=49.6
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEE-------EEcCCC--H----HHHHHHHHHHHhCCCCcEE
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILK-------TCVPDE--M----EEIKDKLKYWVDQSKVDLI 264 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~-------~iV~Dd--~----e~I~~aL~~a~~~~~~DlV 264 (338)
..|++|++|-.+ ..+.|..+++. +|..-... .++.++ + ..+...+++++++.++|+|
T Consensus 109 grrfsViTtt~r---------s~~il~~lv~~-~g~s~~~~~vrstdl~vL~l~~~~~~~~~~l~~~~~~a~~edgAeaI 178 (230)
T COG4126 109 GRRFSVITTTER---------SRPILEELVRS-YGLSRHCRSVRSTDLPVLALEGPPEEAEALLVIEAAEALKEDGAEAI 178 (230)
T ss_pred cceEEEEecCcc---------cHHHHHHHHHh-cCccccccceeeCCCCcccccCChHHHHHHHHHHHHHHhhhcCCCEE
Confidence 368888887654 56888899998 88653333 223322 2 3455666677777678877
Q ss_pred EEeCCccCCCCCChHHHHHhccc
Q psy7342 265 FTSGGTGMSPRDVTPEAMNHLID 287 (338)
Q Consensus 265 ITTGGts~G~~D~t~eal~~l~~ 287 (338)
+ -|+.||+. ..+.|++.++
T Consensus 179 i-LGCAGms~---la~~Lq~~~g 197 (230)
T COG4126 179 I-LGCAGMSD---LADQLQKAFG 197 (230)
T ss_pred E-EcCccHHH---HHHHHHHHhC
Confidence 5 58888887 3566666554
No 144
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=36.95 E-value=64 Score=28.13 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=36.1
Q ss_pred EEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEE-----cCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 203 LALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTC-----VPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 203 IIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~i-----V~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
|+..||.+..|.. +.+...+.+..++++...++ ...+.....+.+.+.+.+..+|+||.+.|+-
T Consensus 2 il~iGDS~~~g~~-----~~l~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~pd~vii~~G~N 70 (200)
T cd01829 2 VLVIGDSLAQGLA-----PGLLRALADNPGIRVINRSKGSSGLVRPDFFDWPEKLKELIAEEKPDVVVVFLGAN 70 (200)
T ss_pred EEEEechHHHHHH-----HHHHHHhccCCCcEEEECccccccccCCCcCCHHHHHHHHHhcCCCCEEEEEecCC
Confidence 4566998876632 23444444325666666544 2223333444455555444699999997763
No 145
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=36.86 E-value=1.2e+02 Score=30.08 Aligned_cols=52 Identities=13% Similarity=0.316 Sum_probs=35.1
Q ss_pred HHHHHHHHcccCCEEEEEE-EcCC-CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 221 PLLAQLLQEDFQHAHILKT-CVPD-EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~-iV~D-d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
..+...|++ .|.++..+. +.++ +.+.+.+.++.+.+. ++|.||-.||-|+-+
T Consensus 38 ~~~~~~l~~-~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~D~IIavGGGs~~D 91 (367)
T cd08182 38 SGLTDILKP-LGTLVVVFDDVQPNPDLEDLAAGIRLLREF-GPDAVLAVGGGSVLD 91 (367)
T ss_pred HHHHHHHHH-cCCeEEEEcCcCCCcCHHHHHHHHHHHHhc-CcCEEEEeCCcHHHH
Confidence 346677888 888776554 4343 355666666655543 699999999977654
No 146
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=36.79 E-value=66 Score=32.11 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=37.1
Q ss_pred cHHHHHHHHHcccCCEEEEEE-EcCC-CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 219 SGPLLAQLLQEDFQHAHILKT-CVPD-EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 219 N~~~L~~lL~~~~G~~v~~~~-iV~D-d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
-...+...|++ .|.++..+. +.++ +.+.+.+.++.+.+. ++|+||-.||-|+-+
T Consensus 46 ~~~~v~~~L~~-~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~-~~D~IIaiGGGS~iD 101 (382)
T PRK10624 46 VVAKVTDVLDA-AGLAYEIYDGVKPNPTIEVVKEGVEVFKAS-GADYLIAIGGGSPQD 101 (382)
T ss_pred chHHHHHHHHH-CCCeEEEeCCCCCCcCHHHHHHHHHHHHhc-CCCEEEEeCChHHHH
Confidence 34567888998 898876664 4333 246677776665554 699999999876543
No 147
>PRK09054 phosphogluconate dehydratase; Validated
Probab=36.75 E-value=62 Score=34.87 Aligned_cols=76 Identities=9% Similarity=0.050 Sum_probs=57.2
Q ss_pred eEeecCceEEEEecCCCccCCe-eecCcHHHHHHHHHcccCCEEEEEEEcC---C--------------CHHHHHHHHHH
Q psy7342 193 WELVRSTCHLLALVSDRCFNKE-SEDKSGPLLAQLLQEDFQHAHILKTCVP---D--------------EMEEIKDKLKY 254 (338)
Q Consensus 193 v~V~~~prVaIIstGdEl~~G~-i~DsN~~~L~~lL~~~~G~~v~~~~iV~---D--------------d~e~I~~aL~~ 254 (338)
+.-..+|.|+|+++-+|+.++. -++.-...+++.+++ .|......+-+| | ++|.|...++.
T Consensus 60 ~~~~~kP~IgIvns~nd~~p~h~~l~~~~~~vk~~v~~-aGg~~~~~Gg~pa~cDGit~G~~GM~~SL~SRdlIA~sie~ 138 (603)
T PRK09054 60 LKAMTRPNIGIVTAYNDMLSAHQPYEHYPDIIKEAARE-AGAVAQVAGGVPAMCDGVTQGQPGMELSLFSRDVIAMSTAV 138 (603)
T ss_pred HHhcCCCEEEEEeccccCcCccccHHHHHHHHHHHHHH-cCCccceeCCCCccCCCccCCCcchhhhhhhHHHHHHHHHH
Confidence 3345799999999999998864 366777888888888 887665552222 2 57888888888
Q ss_pred HHhCCCCcEEEEeCC
Q psy7342 255 WVDQSKVDLIFTSGG 269 (338)
Q Consensus 255 a~~~~~~DlVITTGG 269 (338)
.+..+.+|-+|..||
T Consensus 139 ~l~~~~fDg~v~lg~ 153 (603)
T PRK09054 139 ALSHNMFDAALLLGV 153 (603)
T ss_pred HhhcCCcceEEEecc
Confidence 887767888888775
No 148
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=36.75 E-value=1.1e+02 Score=30.84 Aligned_cols=60 Identities=12% Similarity=0.041 Sum_probs=39.8
Q ss_pred cCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 211 FNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 211 ~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
++|.+.+.+...+..++.+ =|.........+...++.++...+-+.+.+.|.+|+.||=|
T Consensus 46 ~~~~i~~l~~~~v~~~~~~-GGT~lgssR~~~~~~~e~~~~~~~~l~~~gId~LvvIGGDg 105 (347)
T COG0205 46 LEGDIKPLTREDVDDLINR-GGTFLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGDG 105 (347)
T ss_pred cCCcceeccccchhHHHhc-CCeEEeeCCCCCcccHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 3677888888888777776 44444444444455555555555555555799999999865
No 149
>PRK02492 deoxyhypusine synthase-like protein; Provisional
Probab=36.74 E-value=83 Score=31.63 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=33.4
Q ss_pred HHHHHHHHcccCCEEEEEEEcCC-CHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 221 PLLAQLLQEDFQHAHILKTCVPD-EMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~iV~D-d~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
..+.+++++ .++.+ ..+.... -+..+++.|..++++.-+|+||||||..
T Consensus 48 ~i~~~Ml~~-~~~~i-fL~~tgamvsaGlr~~i~~Li~~~~VD~iVTTganl 97 (347)
T PRK02492 48 DIYDMMLQD-KECAV-ILTLAGSLSSAGCMQVYIDLVRNNMVDAIVATGANI 97 (347)
T ss_pred HHHHHHHhC-CCCeE-EEEeccchHHHHHHHHHHHHHHcCCeeEEEECCCCc
Confidence 345555655 55654 3333222 3567899999999887799999999964
No 150
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=36.61 E-value=68 Score=31.98 Aligned_cols=53 Identities=19% Similarity=0.169 Sum_probs=37.2
Q ss_pred HHHHHHHHHcccCCEEEEEEEcCCC--HHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 220 GPLLAQLLQEDFQHAHILKTCVPDE--MEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 220 ~~~L~~lL~~~~G~~v~~~~iV~Dd--~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
...+...|++ .|.++..+.-+..+ .+.+.+.++.+.+. ++|.||-.||-|+-+
T Consensus 46 ~~~v~~~L~~-~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~-~~D~IiaiGGGSviD 100 (379)
T TIGR02638 46 ADKVTDLLDE-AGIAYELFDEVKPNPTITVVKAGVAAFKAS-GADYLIAIGGGSPID 100 (379)
T ss_pred hHHHHHHHHH-CCCeEEEECCCCCCcCHHHHHHHHHHHHhc-CCCEEEEeCChHHHH
Confidence 4567788888 89887666434333 46677776665554 699999999987654
No 151
>COG4002 Predicted phosphotransacetylase [General function prediction only]
Probab=36.37 E-value=1.2e+02 Score=28.68 Aligned_cols=111 Identities=8% Similarity=-0.057 Sum_probs=66.0
Q ss_pred CCCCCcEEEEcCCCCCCCCcccccccCCCcccCCCceeChhcHHHHHhhCCCceeEeecCceEEEEecCCC--ccCCeee
Q psy7342 139 WPKKKKFVVKHSVLPPHINLAKPEWTEKSQQYSTTQVIRPDTNHAQRCSTSMKYWELVRSTCHLLALVSDR--CFNKESE 216 (338)
Q Consensus 139 lP~gaDaVVi~~~~~~g~nVr~~Gi~~Ge~ll~~G~~l~p~~i~~lLas~Gi~~v~V~~~prVaIIstGdE--l~~G~i~ 216 (338)
||-.|-+-++..+...|=-..|.|+-+|-.|-.+ -.| ..|||-=+.+. -..|+|+++|-|-- +-+.+..
T Consensus 87 m~~~~Ras~le~~~~~~flLaPVGIDEg~ti~dk------~ri-~~laaeflrr~--~~ep~VaVlSgGRlgDlGR~~~V 157 (256)
T COG4002 87 MKFYCRASILENPFTNGFLLAPVGIDEGKTIKDK------IRI-IELAAEFLRRT--GIEPKVAVLSGGRLGDLGRNKEV 157 (256)
T ss_pred CCceeeeeeeecCCcCceEEeccccCCCccHHHH------HHH-HHHHHHHHHHh--CCCcceEEecCCcchhccCcchh
Confidence 4555444444333333333566777766655433 233 44443333332 35699999997632 2222233
Q ss_pred cC---cHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 217 DK---SGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 217 Ds---N~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
|. .+.++.+.++. .|.++..++|+ |++++.+ -|+||---|.+
T Consensus 158 DrtladgEfva~~~k~-~g~~v~H~~IL----------IEealkd--gnvIia~dGIt 202 (256)
T COG4002 158 DRTLADGEFVAEHFKG-NGVDVIHYGIL----------IEEALKD--GNVIIAVDGIT 202 (256)
T ss_pred hhhhhchHHHHHHHhc-cCceeEEeeeE----------HHHHhhc--CCEEEEecCcc
Confidence 32 47899999999 99999999995 3444544 38998776653
No 152
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=36.03 E-value=2.1e+02 Score=24.74 Aligned_cols=71 Identities=13% Similarity=0.026 Sum_probs=45.5
Q ss_pred hhcHHHHHhhCCCceeEeecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHh
Q psy7342 178 PDTNHAQRCSTSMKYWELVRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVD 257 (338)
Q Consensus 178 p~~i~~lLas~Gi~~v~V~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~ 257 (338)
|.-+..+|...|++ ++..+|.|+--+. ..+.-++.+|.+ .|.+++-...-.. .+ ++.+.
T Consensus 12 ~~a~~~ll~~~~~~----~~gk~v~VvGrs~---------~vG~pla~lL~~-~gatV~~~~~~t~---~l----~~~v~ 70 (140)
T cd05212 12 AKAVKELLNKEGVR----LDGKKVLVVGRSG---------IVGAPLQCLLQR-DGATVYSCDWKTI---QL----QSKVH 70 (140)
T ss_pred HHHHHHHHHHcCCC----CCCCEEEEECCCc---------hHHHHHHHHHHH-CCCEEEEeCCCCc---CH----HHHHh
Confidence 33343677776663 4667777765443 467888999999 8988876643221 23 33444
Q ss_pred CCCCcEEEEeCCcc
Q psy7342 258 QSKVDLIFTSGGTG 271 (338)
Q Consensus 258 ~~~~DlVITTGGts 271 (338)
+ +|+||+.-|.-
T Consensus 71 ~--ADIVvsAtg~~ 82 (140)
T cd05212 71 D--ADVVVVGSPKP 82 (140)
T ss_pred h--CCEEEEecCCC
Confidence 4 79999876654
No 153
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=36.01 E-value=1.5e+02 Score=32.63 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=44.9
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCC-HHHHHHHHHHHHhCCCCcEEEEeCCccCCCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDE-MEEIKDKLKYWVDQSKVDLIFTSGGTGMSPR 275 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd-~e~I~~aL~~a~~~~~~DlVITTGGts~G~~ 275 (338)
...+|.||--| |++...+..+|++ .|+++. +++.+ .+.+ +.. . .+|.||.+||-|--.+
T Consensus 515 ~~~~IlVID~g---------ds~~~~l~~~L~~-~G~~v~---vv~~~~~~~~---~~~--~--~~DgLILsgGPGsp~d 574 (717)
T TIGR01815 515 EGRRILLVDHE---------DSFVHTLANYLRQ-TGASVT---TLRHSHAEAA---FDE--R--RPDLVVLSPGPGRPAD 574 (717)
T ss_pred CCCEEEEEECC---------ChhHHHHHHHHHH-CCCeEE---EEECCCChhh---hhh--c--CCCEEEEcCCCCCchh
Confidence 34567777544 5688899999999 998774 33322 1111 111 2 3899999999875322
Q ss_pred CChHHHHHhccccccC
Q psy7342 276 DVTPEAMNHLIDKKVP 291 (338)
Q Consensus 276 D~t~eal~~l~~~~lp 291 (338)
.-..+.+.+..+..+|
T Consensus 575 ~~~~~~I~~~~~~~iP 590 (717)
T TIGR01815 575 FDVAGTIDAALARGLP 590 (717)
T ss_pred cccHHHHHHHHHCCCC
Confidence 2234555555544444
No 154
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=35.01 E-value=70 Score=30.24 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=14.2
Q ss_pred HHHHhCCCCcEEEEeCCccCCC
Q psy7342 253 KYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 253 ~~a~~~~~~DlVITTGGts~G~ 274 (338)
.+++.+ +|+||..||.-+.+
T Consensus 59 ~~~l~~--~D~vI~gGG~l~~d 78 (298)
T TIGR03609 59 LRALRR--ADVVIWGGGSLLQD 78 (298)
T ss_pred HHHHHH--CCEEEECCcccccC
Confidence 344555 79999988877763
No 155
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=34.87 E-value=70 Score=31.64 Aligned_cols=52 Identities=13% Similarity=0.149 Sum_probs=36.3
Q ss_pred HHHHHHHHcccCCEEEEEE-EcCC-CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 221 PLLAQLLQEDFQHAHILKT-CVPD-EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~-iV~D-d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
.-+...|++ .|.++..+. +.++ +.+.+.+.++.+.+. ++|+||-.||-|+-+
T Consensus 44 ~~v~~~L~~-~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~-~~D~IIavGGGSviD 97 (357)
T cd08181 44 DDVTKALEE-LGIEYEIFDEVEENPSLETIMEAVEIAKKF-NADFVIGIGGGSPLD 97 (357)
T ss_pred HHHHHHHHH-cCCeEEEeCCCCCCcCHHHHHHHHHHHHhc-CCCEEEEeCCchHHH
Confidence 557788888 888876654 4333 345566666665554 699999999987654
No 156
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=34.21 E-value=4.6e+02 Score=25.68 Aligned_cols=131 Identities=16% Similarity=0.173 Sum_probs=76.4
Q ss_pred cEEEe-eCCCCCCCCcEEEE--cCCCCCCCCcc-cccccCCCcccCCCceeChhcHHHHHhhCCCceeEeecCceEEEEe
Q psy7342 130 SAFEV-GGEPWPKKKKFVVK--HSVLPPHINLA-KPEWTEKSQQYSTTQVIRPDTNHAQRCSTSMKYWELVRSTCHLLAL 205 (338)
Q Consensus 130 ~av~I-TGa~lP~gaDaVVi--~~~~~~g~nVr-~~Gi~~Ge~ll~~G~~l~p~~i~~lLas~Gi~~v~V~~~prVaIIs 205 (338)
-.|.| +=...|..+|.||+ +..+++|.||- -.| +=..++|..+ .-.+..=-.+..-..+|+++|+.
T Consensus 84 ~~V~i~~P~~~~~~FDlvi~p~HD~~~~~~Nvl~t~g---------a~~~i~~~~l-~~a~~~~~~~~~~l~~p~~avLI 153 (311)
T PF06258_consen 84 KTVQIMDPRLPPRPFDLVIVPEHDRLPRGPNVLPTLG---------APNRITPERL-AEAAAAWAPRLAALPRPRVAVLI 153 (311)
T ss_pred eEEEEcCCCCCccccCEEEECcccCcCCCCceEeccc---------CCCcCCHHHH-HHHHHhhhhhhccCCCCeEEEEE
Confidence 36666 43334899999995 56677888884 444 2245666655 33221111222224689999999
Q ss_pred cCCCccCCee---ecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 206 VSDRCFNKES---EDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 206 tGdEl~~G~i---~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
=|+.-...-- ...-...|.+++++ .|.. .....-+-.+.++.++|.+.++.. ..+.+- .+.+.++
T Consensus 154 GG~s~~~~~~~~~~~~l~~~l~~~~~~-~~~~-~~vttSRRTp~~~~~~L~~~~~~~-~~~~~~-~~~~~nP 221 (311)
T PF06258_consen 154 GGDSKHYRWDEEDAERLLDQLAALAAA-YGGS-LLVTTSRRTPPEAEAALRELLKDN-PGVYIW-DGTGENP 221 (311)
T ss_pred CcCCCCcccCHHHHHHHHHHHHHHHHh-CCCe-EEEEcCCCCcHHHHHHHHHhhcCC-CceEEe-cCCCCCc
Confidence 8886321111 11334566777777 7733 445566777888888888888541 334233 5555443
No 157
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=34.15 E-value=97 Score=30.52 Aligned_cols=53 Identities=15% Similarity=0.097 Sum_probs=38.5
Q ss_pred HHHHHHHHHcccCCEEEEEEEcCC--CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 220 GPLLAQLLQEDFQHAHILKTCVPD--EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 220 ~~~L~~lL~~~~G~~v~~~~iV~D--d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
-..+...|++ .|.++..+.-+.. +.+.+.+.++.+.+. ++|.||-.||-|+=+
T Consensus 38 ~~~v~~~L~~-~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~D~IIaiGGGS~~D 92 (366)
T PF00465_consen 38 VDRVLDALEE-AGIEVQVFDGVGPNPTLEDVDEAAEQARKF-GADCIIAIGGGSVMD 92 (366)
T ss_dssp HHHHHHHHHH-TTCEEEEEEEESSS-BHHHHHHHHHHHHHT-TSSEEEEEESHHHHH
T ss_pred HHHHHHHHhh-CceEEEEEecCCCCCcHHHHHHHHHHHHhc-CCCEEEEcCCCCcCc
Confidence 3566677888 8999877774443 356777777766654 699999999987643
No 158
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=34.03 E-value=1.1e+02 Score=28.70 Aligned_cols=64 Identities=3% Similarity=-0.043 Sum_probs=44.3
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
.++++|...++. | .+....+...+++ .|.+++.....+.....+...+.+..+. ++|+|+..+.
T Consensus 138 ~~vail~~~~~~--g---~~~~~~~~~~~~~-~G~~vv~~~~~~~~~~d~~~~v~~l~~~-~pd~v~~~~~ 201 (312)
T cd06346 138 KSVATTYINNDY--G---VGLADAFTKAFEA-LGGTVTNVVAHEEGKSSYSSEVAAAAAG-GPDALVVIGY 201 (312)
T ss_pred CeEEEEEccCch--h---hHHHHHHHHHHHH-cCCEEEEEEeeCCCCCCHHHHHHHHHhc-CCCEEEEecc
Confidence 578888766542 2 2345667888999 9999887766665555566666666554 5899998754
No 159
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=34.02 E-value=1.7e+02 Score=28.13 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=31.0
Q ss_pred HHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC-ccCCCCCChHHH
Q psy7342 224 AQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG-TGMSPRDVTPEA 281 (338)
Q Consensus 224 ~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG-ts~G~~D~t~ea 281 (338)
...+++ .|..++...+ +.+.+.+ .+.++. +|-||.+|| +.+...++.+.+
T Consensus 26 v~~l~~-aG~~vvpi~~-~~~~~~l----~~~l~~--~dG~l~~Gg~~~~~~~~~~~~~ 76 (273)
T cd01747 26 VKFLES-AGARVVPIWI-NESEEYY----DKLFKS--INGILFPGGAVDIDTSGYARTA 76 (273)
T ss_pred HHHHHH-CCCeEEEEEe-CCcHHHH----HHHHhh--CCEEEECCCCCcCCccccchHH
Confidence 356777 8998766654 3334444 444444 788888887 566656666533
No 160
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=33.91 E-value=51 Score=25.32 Aligned_cols=37 Identities=16% Similarity=0.242 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHH
Q psy7342 243 DEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPE 280 (338)
Q Consensus 243 Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~e 280 (338)
.|.+.|.++|.+...+. .|++|.+||.-.|.+.+..+
T Consensus 15 ~D~~~i~~~Ld~~~~~~-~~~~lvhGga~~GaD~iA~~ 51 (71)
T PF10686_consen 15 TDHELIWAALDKVHARH-PDMVLVHGGAPKGADRIAAR 51 (71)
T ss_pred ccHHHHHHHHHHHHHhC-CCEEEEECCCCCCHHHHHHH
Confidence 47888999999888764 79999999987776554433
No 161
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=33.67 E-value=67 Score=27.27 Aligned_cols=58 Identities=14% Similarity=-0.010 Sum_probs=40.9
Q ss_pred EEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 203 LALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 203 IIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
|+-.||.+..|.... . .. .+..+...++-...-+.+.+.+++.+. ..+|+|+...|+=
T Consensus 2 v~~~GdSi~~~~~~~-------~--~~-~~~~v~n~g~~G~~~~~~~~~l~~~~~-~~pd~vvl~~G~N 59 (169)
T cd01828 2 LVFLGDSLTEGGPWA-------L--LF-PDVKVANRGISGDTTRGLLARLDEDVA-LQPKAIFIMIGIN 59 (169)
T ss_pred EEEecchhhccCcHH-------H--hc-CCCceEecCcccccHHHHHHHHHHHhc-cCCCEEEEEeecc
Confidence 677899988774311 1 22 466778888877777778888887763 3589999888853
No 162
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=33.64 E-value=1.2e+02 Score=27.72 Aligned_cols=48 Identities=13% Similarity=0.007 Sum_probs=27.6
Q ss_pred HHHHHHHcccCCEEEEEEEcC-CCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 222 LLAQLLQEDFQHAHILKTCVP-DEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 222 ~L~~lL~~~~G~~v~~~~iV~-Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
....+.++ .|+.+..+.... .+.+...+.+.+++.+.++|++|+.|=.
T Consensus 42 ~~~~~a~~-~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~iv~~~~~ 90 (200)
T PRK05647 42 YGLERAEA-AGIPTFVLDHKDFPSREAFDAALVEALDAYQPDLVVLAGFM 90 (200)
T ss_pred hHHHHHHH-cCCCEEEECccccCchhHhHHHHHHHHHHhCcCEEEhHHhh
Confidence 35677788 898876644322 1233333444444443458999987633
No 163
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=33.53 E-value=91 Score=26.67 Aligned_cols=62 Identities=15% Similarity=0.082 Sum_probs=35.7
Q ss_pred EEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHH----HHHHHHHhCCCCcEEEEeCCcc
Q psy7342 203 LALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIK----DKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 203 IIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~----~aL~~a~~~~~~DlVITTGGts 271 (338)
|+.+||.+..|. .....|.+.+|..+...++-.+.-..+. +.+...+...++|+||...|+-
T Consensus 2 iv~~GDS~t~g~-------~~~~~l~~~l~~~v~N~g~~G~t~~~~~~~~~~~~~~~l~~~~pd~Vii~~G~N 67 (189)
T cd01825 2 IAQLGDSHIAGD-------FFTDVLRGLLGVIYDNLGVNGASASLLLKWDAEFLQAQLAALPPDLVILSYGTN 67 (189)
T ss_pred eeEecCcccccc-------chhhHHHhhhceEEecCccCchhhhhhhccCHHHHHHHHhhCCCCEEEEECCCc
Confidence 556799988762 1233344424677777777555433332 1222233344589999888764
No 164
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=33.45 E-value=74 Score=25.53 Aligned_cols=50 Identities=20% Similarity=0.088 Sum_probs=33.7
Q ss_pred eeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 214 ESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 214 ~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
..+.-.-.+++++|++ .|+++..++.-. +.+++.+.+.+. ++|+|..|.-
T Consensus 11 ~~~~lGl~~la~~l~~-~G~~v~~~d~~~-~~~~l~~~~~~~----~pd~V~iS~~ 60 (121)
T PF02310_consen 11 EVHPLGLLYLAAYLRK-AGHEVDILDANV-PPEELVEALRAE----RPDVVGISVS 60 (121)
T ss_dssp SSTSHHHHHHHHHHHH-TTBEEEEEESSB--HHHHHHHHHHT----TCSEEEEEES
T ss_pred cchhHHHHHHHHHHHH-CCCeEEEECCCC-CHHHHHHHHhcC----CCcEEEEEcc
Confidence 3445566788999999 999988775432 345565555543 4899888664
No 165
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=33.33 E-value=76 Score=31.31 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=35.5
Q ss_pred cCcHHHHHHHHHcccCCEEEEEEEcCC-CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 217 DKSGPLLAQLLQEDFQHAHILKTCVPD-EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 217 DsN~~~L~~lL~~~~G~~v~~~~iV~D-d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
+..+..+...|++ .| ++..+ +.++ +.+.+.+.++.+.+. ++|+||-.||=++++
T Consensus 47 ~~~~~~l~~~l~~-~~-~~~~~-~~~~~t~~~v~~~~~~~~~~-~~d~IIaiGGGsv~D 101 (350)
T PRK00843 47 KIAGDRVEENLED-AG-DVEVV-IVDEATMEEVEKVEEKAKDV-NAGFLIGVGGGKVID 101 (350)
T ss_pred HHHHHHHHHHHHh-cC-CeeEE-eCCCCCHHHHHHHHHHhhcc-CCCEEEEeCCchHHH
Confidence 3345677778887 77 55444 4443 355566666665544 589999999977665
No 166
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=33.15 E-value=88 Score=27.65 Aligned_cols=68 Identities=16% Similarity=-0.017 Sum_probs=40.8
Q ss_pred EEecCCCccCCeee---------cCcHHHHHHHHHcccC--CEEEEEEEcCCCHHH---------HHHHHHHHHhC-CCC
Q psy7342 203 LALVSDRCFNKESE---------DKSGPLLAQLLQEDFQ--HAHILKTCVPDEMEE---------IKDKLKYWVDQ-SKV 261 (338)
Q Consensus 203 IIstGdEl~~G~i~---------DsN~~~L~~lL~~~~G--~~v~~~~iV~Dd~e~---------I~~aL~~a~~~-~~~ 261 (338)
|+..||.+..|... +.=...|+..|.+ .+ ++++..++-.+.-.. ....+.+.+.. ..+
T Consensus 2 I~~~GDSiT~G~~~~~~~~~~~~~~w~~~L~~~l~~-~~~~~~viN~Gv~G~tt~~~~~~~~~~~~l~~l~~~l~~~~~p 80 (208)
T cd01839 2 ILCFGDSNTWGIIPDTGGRYPFEDRWPGVLEKALGA-NGENVRVIEDGLPGRTTVLDDPFFPGRNGLTYLPQALESHSPL 80 (208)
T ss_pred EEEEecCcccCCCCCCCCcCCcCCCCHHHHHHHHcc-CCCCeEEEecCcCCcceeccCccccCcchHHHHHHHHHhCCCC
Confidence 56779998866432 1223567777876 44 778877776665311 11223333322 348
Q ss_pred cEEEEeCCcc
Q psy7342 262 DLIFTSGGTG 271 (338)
Q Consensus 262 DlVITTGGts 271 (338)
|+||...|+=
T Consensus 81 d~vii~lGtN 90 (208)
T cd01839 81 DLVIIMLGTN 90 (208)
T ss_pred CEEEEecccc
Confidence 9999999883
No 167
>PRK14556 pyrH uridylate kinase; Provisional
Probab=32.85 E-value=1.2e+02 Score=29.12 Aligned_cols=98 Identities=9% Similarity=0.017 Sum_probs=56.4
Q ss_pred CCcccC-CCceeChhcHHHHHhhCCCceeEeec-CceEEEEecCCCccCCeeecC-------------------cHHHHH
Q psy7342 166 KSQQYS-TTQVIRPDTNHAQRCSTSMKYWELVR-STCHLLALVSDRCFNKESEDK-------------------SGPLLA 224 (338)
Q Consensus 166 Ge~ll~-~G~~l~p~~i~~lLas~Gi~~v~V~~-~prVaIIstGdEl~~G~i~Ds-------------------N~~~L~ 224 (338)
||.+.. .+.-+++..+ .-++.. +.++ .+ ..+++|+.=|-.+.+|...+. |+.+|.
T Consensus 24 Ge~l~~~~~~~~d~~~~-~~~a~~-i~~~--~~~g~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT~iNal~l~ 99 (249)
T PRK14556 24 GESLSADQGFGINVESA-QPIINQ-IKTL--TNFGVELALVVGGGNILRGGRANFGNKIRRATADSMGMIATMINALALR 99 (249)
T ss_pred hhhCcCCCCCCcCHHHH-HHHHHH-HHHH--HhCCcEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHHHHHHHHHH
Confidence 444443 2334677555 444322 2222 22 457899998888877643331 677888
Q ss_pred HHHHcccCCEEEEEEEcC-----CCHHHHHHHHHHHHhCCCCcEEEEeCCccC
Q psy7342 225 QLLQEDFQHAHILKTCVP-----DEMEEIKDKLKYWVDQSKVDLIFTSGGTGM 272 (338)
Q Consensus 225 ~lL~~~~G~~v~~~~iV~-----Dd~e~I~~aL~~a~~~~~~DlVITTGGts~ 272 (338)
..|++ .|....-..-++ +-+ ..+.+.+.+++ -++||..||+|.
T Consensus 100 ~~l~~-~~~~~~v~sa~~~~~~~e~~--~~~~~~~~l~~--g~vvi~~gg~G~ 147 (249)
T PRK14556 100 DMLIS-EGVDAEVFSAKGVDGLLKVA--SAHEFNQELAK--GRVLIFAGGTGN 147 (249)
T ss_pred HHHHH-cCCCeEEeeccccCcCCCCC--CHHHHHHHHhC--CCEEEEECCCCC
Confidence 99998 887653333222 222 23333344555 479999999864
No 168
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=32.48 E-value=1.5e+02 Score=27.25 Aligned_cols=65 Identities=15% Similarity=0.037 Sum_probs=38.3
Q ss_pred eEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 200 CHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 200 rVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
+|+++....+.........--..+...+++ .|+++..... ++.+...+.++.+.+. ++|-||.++
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~-~gy~~~i~~~--~~~~~~~~~i~~l~~~-~vdgiI~~~ 65 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKE-LGIEYKYVES--KSDADYEPNLEQLADA-GYDLIVGVG 65 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHH-cCCeEEEEec--CCHHHHHHHHHHHHhC-CCCEEEEcC
Confidence 356666543221122222233455677888 9988776533 2445556777776664 599999875
No 169
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=32.18 E-value=1.6e+02 Score=28.69 Aligned_cols=66 Identities=12% Similarity=0.038 Sum_probs=47.6
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
..||++|...+. .| ......+...+++ .|++++....++.....+...+.++... ++|+|+..+-.
T Consensus 140 ~~kvaiv~~~~~--~g---~~~~~~~~~~~~~-~G~~vv~~~~~~~~~~D~~~~v~~i~~~-~pd~V~~~~~~ 205 (351)
T cd06334 140 GKKIALVYHDSP--FG---KEPIEALKALAEK-LGFEVVLEPVPPPGPNDQKAQWLQIRRS-GPDYVILWGWG 205 (351)
T ss_pred CCeEEEEeCCCc--cc---hhhHHHHHHHHHH-cCCeeeeeccCCCCcccHHHHHHHHHHc-CCCEEEEeccc
Confidence 577888876554 23 2456678888999 9999988888776666667777776654 59999876544
No 170
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.18 E-value=95 Score=24.65 Aligned_cols=60 Identities=10% Similarity=0.079 Sum_probs=37.9
Q ss_pred cCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEE-EeCCccCCCCCChHH
Q psy7342 217 DKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIF-TSGGTGMSPRDVTPE 280 (338)
Q Consensus 217 DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVI-TTGGts~G~~D~t~e 280 (338)
+.+-..+...+++ +|++...+ --++..+.-...|...+.+ +|+|| .|+=+|......+.+
T Consensus 9 ~~~~~~~~~~~~~-~G~~~~~h-g~~~~~~~~~~~l~~~i~~--aD~VIv~t~~vsH~~~~~vk~ 69 (97)
T PF10087_consen 9 EDRERRYKRILEK-YGGKLIHH-GRDGGDEKKASRLPSKIKK--ADLVIVFTDYVSHNAMWKVKK 69 (97)
T ss_pred cccHHHHHHHHHH-cCCEEEEE-ecCCCCccchhHHHHhcCC--CCEEEEEeCCcChHHHHHHHH
Confidence 3566788999999 99998887 2233333344456666655 79887 566555544333333
No 171
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=31.83 E-value=2.5e+02 Score=24.73 Aligned_cols=59 Identities=17% Similarity=0.076 Sum_probs=38.5
Q ss_pred ecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 196 VRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 196 ~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
...++++++.-.+.+. + +..+-+- +|.++..+.+ ++++++...++++..+ ++|+||=.|
T Consensus 75 ~~~~~Iavv~~~~~~~-~---------~~~~~~l-l~~~i~~~~~--~~~~e~~~~i~~~~~~-G~~viVGg~ 133 (176)
T PF06506_consen 75 KYGPKIAVVGYPNIIP-G---------LESIEEL-LGVDIKIYPY--DSEEEIEAAIKQAKAE-GVDVIVGGG 133 (176)
T ss_dssp CCTSEEEEEEESS-SC-C---------HHHHHHH-HT-EEEEEEE--SSHHHHHHHHHHHHHT-T--EEEESH
T ss_pred hcCCcEEEEecccccH-H---------HHHHHHH-hCCceEEEEE--CCHHHHHHHHHHHHHc-CCcEEECCH
Confidence 3568999999776541 1 3333344 5667766665 7799999999999887 599887444
No 172
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=31.81 E-value=96 Score=27.47 Aligned_cols=13 Identities=31% Similarity=0.884 Sum_probs=10.9
Q ss_pred CcEEEEeCCccCC
Q psy7342 261 VDLIFTSGGTGMS 273 (338)
Q Consensus 261 ~DlVITTGGts~G 273 (338)
+|+||+++..++-
T Consensus 98 ~diVi~at~~g~~ 110 (194)
T cd01078 98 ADVVFAAGAAGVE 110 (194)
T ss_pred CCEEEECCCCCce
Confidence 8999999887773
No 173
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=31.61 E-value=92 Score=30.98 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=35.4
Q ss_pred HHHHHHHHcccCCEEEEEE-EcCC-CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 221 PLLAQLLQEDFQHAHILKT-CVPD-EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~-iV~D-d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
..+...|++ .|.++..+. +-++ +.+.+.+.++.+.+. ++|.||-.||-|+-+
T Consensus 44 ~~v~~~L~~-~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~-~~D~IiavGGGS~iD 97 (380)
T cd08185 44 DRVIELLKQ-AGVEVVVFDKVEPNPTTTTVMEGAALAREE-GCDFVVGLGGGSSMD 97 (380)
T ss_pred HHHHHHHHH-cCCeEEEeCCccCCCCHHHHHHHHHHHHHc-CCCEEEEeCCccHHH
Confidence 457788888 898876554 4433 345566666655543 699999999876543
No 174
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=31.34 E-value=1.2e+02 Score=26.60 Aligned_cols=44 Identities=20% Similarity=0.115 Sum_probs=28.8
Q ss_pred HHHHHHHHHcccC---CEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCC
Q psy7342 220 GPLLAQLLQEDFQ---HAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMS 273 (338)
Q Consensus 220 ~~~L~~lL~~~~G---~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G 273 (338)
...+..+|++ .| .++..+....++. ...++. +|.||.+||-+-.
T Consensus 13 ~~~~~~~l~~-~g~~~~~~~~~~~~~~~~-------~~~~~~--~dgvil~Gg~~~~ 59 (188)
T cd01741 13 PGLFEDLLRE-AGAETIEIDVVDVYAGEL-------LPDLDD--YDGLVILGGPMSV 59 (188)
T ss_pred cchHHHHHHh-cCCCCceEEEEecCCCCC-------CCCccc--CCEEEECCCCccC
Confidence 5677888998 88 5666555444332 112333 8999999997644
No 175
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=31.25 E-value=1.8e+02 Score=26.05 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=36.4
Q ss_pred ecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc-cCCCCCChHHHHHh
Q psy7342 216 EDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT-GMSPRDVTPEAMNH 284 (338)
Q Consensus 216 ~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt-s~G~~D~t~eal~~ 284 (338)
+||-.+.+..+|++ .|+.+..+..-..+.+. +.. + ++|.||.+||- ++.+.+...+.++.
T Consensus 8 ~dsft~~~~~~l~~-~g~~~~~~~~~~~~~~~----~~~-~---~~~~iilsgGp~~~~~~~~~~~~i~~ 68 (193)
T PRK08857 8 YDSFTYNLYQYFCE-LGAQVKVVRNDEIDIDG----IEA-L---NPTHLVISPGPCTPNEAGISLQAIEH 68 (193)
T ss_pred CCCcHHHHHHHHHH-CCCcEEEEECCCCCHHH----Hhh-C---CCCEEEEeCCCCChHHCcchHHHHHH
Confidence 58889999999999 99876544321112222 222 1 26899999976 44434344455544
No 176
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=31.20 E-value=64 Score=30.78 Aligned_cols=103 Identities=12% Similarity=0.114 Sum_probs=58.0
Q ss_pred CceeChhcHHHHHhhCCCceeEeecCceEEEEecCCCccCCeee------------------cCcHHHHHHHHHcccCCE
Q psy7342 173 TQVIRPDTNHAQRCSTSMKYWELVRSTCHLLALVSDRCFNKESE------------------DKSGPLLAQLLQEDFQHA 234 (338)
Q Consensus 173 G~~l~p~~i~~lLas~Gi~~v~V~~~prVaIIstGdEl~~G~i~------------------DsN~~~L~~lL~~~~G~~ 234 (338)
|--++|.-+ .-+|. -+.++. ..-..|+|+.=|-.+.+|.+- --|+..|...|++ .|.+
T Consensus 22 ~~gid~~~i-~~~a~-~i~~~~-~~g~eV~iVvGGGni~Rg~~~~~~g~~r~~~D~mGmlaTvmNal~L~~aL~~-~~~~ 97 (238)
T COG0528 22 GFGIDPEVL-DRIAN-EIKELV-DLGVEVAVVVGGGNIARGYIGAAAGMDRVTADYMGMLATVMNALALQDALER-LGVD 97 (238)
T ss_pred CCCCCHHHH-HHHHH-HHHHHH-hcCcEEEEEECCCHHHHhHHHHHcCCchhhhhHHHHHHHHHHHHHHHHHHHh-cCCc
Confidence 334666655 44431 233331 224688888888877654221 1278899999998 8876
Q ss_pred EEEEEE--cC--CCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHh
Q psy7342 235 HILKTC--VP--DEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNH 284 (338)
Q Consensus 235 v~~~~i--V~--Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~ 284 (338)
..-..- .| -++...+++++ .+++ -.+||..||||.-- ||-++...
T Consensus 98 ~~v~sai~~~~~~e~~~~~~A~~-~l~~--grVvIf~gGtg~P~--fTTDt~AA 146 (238)
T COG0528 98 TRVQSAIAMPQVAEPYSRREAIR-HLEK--GRVVIFGGGTGNPG--FTTDTAAA 146 (238)
T ss_pred ceecccccCccccCccCHHHHHH-HHHc--CCEEEEeCCCCCCC--CchHHHHH
Confidence 433322 22 23333444443 3444 49999999997643 44444433
No 177
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=31.10 E-value=1.1e+02 Score=30.43 Aligned_cols=52 Identities=19% Similarity=0.167 Sum_probs=37.3
Q ss_pred HHHHHHHHcccCCEEEEEEEcCCC--HHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 221 PLLAQLLQEDFQHAHILKTCVPDE--MEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~iV~Dd--~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
..+.+.|++ .|.++..+.-+..+ .+.+.+.++.+.+. ++|.||-.||-|+-+
T Consensus 41 ~~v~~~L~~-~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~-~~D~IIaiGGGS~~D 94 (375)
T cd08194 41 DKLTDSLKK-EGIESAIFDDVVSEPTDESVEEGVKLAKEG-GCDVIIALGGGSPID 94 (375)
T ss_pred HHHHHHHHH-CCCeEEEECCCCCCcCHHHHHHHHHHHHhc-CCCEEEEeCCchHHH
Confidence 457888888 89887666544444 55677777666544 699999999977654
No 178
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=30.92 E-value=2.6e+02 Score=26.53 Aligned_cols=65 Identities=18% Similarity=0.136 Sum_probs=46.3
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCC--HHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDE--MEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd--~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
-++++|...++- | ......+...+++ .|.++.....++.. ...+...|.+.... ++|+||..+..
T Consensus 136 ~~v~ii~~~~~~--g---~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~-~~dvvi~~~~~ 202 (350)
T cd06366 136 RRVATIYEDDDY--G---SGGLPDLVDALQE-AGIEISYRAAFPPSANDDDITDALKKLKEK-DSRVIVVHFSP 202 (350)
T ss_pred cEEEEEEEcCcc--c---chhHHHHHHHHHH-cCCEEEEEeccCCCCChhHHHHHHHHHhcC-CCeEEEEECCh
Confidence 467888765542 2 2235677888998 99998887777764 56788888877654 48999987754
No 179
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=30.80 E-value=1.6e+02 Score=28.35 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=36.7
Q ss_pred cHHHHHHHHHcccCCEEEEEEEcCC--CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 219 SGPLLAQLLQEDFQHAHILKTCVPD--EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 219 N~~~L~~lL~~~~G~~v~~~~iV~D--d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
-...+...|++ . .++..+..+.. +.+.+.+.++.+.+. ++|.||-.||-|+.+
T Consensus 38 ~~~~v~~~l~~-~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~d~IIaiGGGs~~D 92 (332)
T cd07766 38 VGEKVADSLKK-L-IAVHIFDGVGPNPTFEEVKEAVERARAA-EVDAVIAVGGGSTLD 92 (332)
T ss_pred HHHHHHHHHHh-c-CcEEEeCCcCCCcCHHHHHHHHHHHHhc-CcCEEEEeCCchHHH
Confidence 34556777777 6 66665554443 566777777776654 599999999987765
No 180
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=30.66 E-value=86 Score=31.77 Aligned_cols=53 Identities=13% Similarity=0.136 Sum_probs=37.2
Q ss_pred HHHHHHHHHcccCCEEEEEE-EcCC-CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 220 GPLLAQLLQEDFQHAHILKT-CVPD-EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 220 ~~~L~~lL~~~~G~~v~~~~-iV~D-d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
...+...|++ .|.++..+. +.++ +.+.+.+.++.+.+. ++|+||-.||-|+-+
T Consensus 40 ~~~v~~~L~~-~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~-~~D~IIaiGGGSviD 94 (414)
T cd08190 40 VKVVLDSLEA-AGINFEVYDDVRVEPTDESFKDAIAFAKKG-QFDAFVAVGGGSVID 94 (414)
T ss_pred HHHHHHHHHH-cCCcEEEeCCCCCCcCHHHHHHHHHHHHhc-CCCEEEEeCCccHHH
Confidence 3567778888 888876553 4433 456677776666554 699999999987754
No 181
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=30.66 E-value=79 Score=26.21 Aligned_cols=53 Identities=21% Similarity=0.197 Sum_probs=37.5
Q ss_pred CCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 212 NKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 212 ~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
+|+..|--..++..+|+. .|+++++.+.-- ..+++.+++.+ .++|+|..|+-.
T Consensus 8 ~gd~H~lG~~~~~~~l~~-~G~~vi~lG~~v-p~e~~~~~a~~----~~~d~V~iS~~~ 60 (122)
T cd02071 8 GLDGHDRGAKVIARALRD-AGFEVIYTGLRQ-TPEEIVEAAIQ----EDVDVIGLSSLS 60 (122)
T ss_pred CCChhHHHHHHHHHHHHH-CCCEEEECCCCC-CHHHHHHHHHH----cCCCEEEEcccc
Confidence 355667777888999999 999999998742 23344444443 258999998754
No 182
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=30.61 E-value=2.5e+02 Score=24.45 Aligned_cols=51 Identities=12% Similarity=0.060 Sum_probs=36.1
Q ss_pred CcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 218 KSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 218 sN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
.-...+...+++ .|+++..... ..+++...+.+++++.+ ++|.||..+...
T Consensus 16 ~~~~g~~~~~~~-~g~~l~~~~~-~~~~~~~~~~~~~~~~~-~~d~ii~~~~~~ 66 (264)
T cd01537 16 QVLKGIEEAAKA-AGYQVLLANS-QNDAEKQLSALENLIAR-GVDGIIIAPSDL 66 (264)
T ss_pred HHHHHHHHHHHH-cCCeEEEEeC-CCCHHHHHHHHHHHHHc-CCCEEEEecCCC
Confidence 344566677888 8988765544 44667788888888775 599999876443
No 183
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=30.52 E-value=73 Score=31.08 Aligned_cols=75 Identities=11% Similarity=0.103 Sum_probs=57.1
Q ss_pred cCceEEEEecCCC------cc---CCe------eecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCC
Q psy7342 197 RSTCHLLALVSDR------CF---NKE------SEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKV 261 (338)
Q Consensus 197 ~~prVaIIstGdE------l~---~G~------i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~ 261 (338)
+++|++|+.+=.. |+ .|+ ..=||-+-+..+..+ +|+......+-++++.+-++.+.+.++++++
T Consensus 89 ~~~ri~i~VSK~~HCL~DLL~r~~~g~L~~eI~~VIsNH~dl~~~v~~-~~IPfhhip~~~~~k~e~E~~~~~ll~~~~~ 167 (287)
T COG0788 89 QRKRIAILVSKEDHCLGDLLYRWRIGELPAEIVAVISNHDDLRPLVER-FDIPFHHIPVTKENKAEAEARLLELLEEYGA 167 (287)
T ss_pred cCceEEEEEechHHHHHHHHHHHhcCCcCCceEEEEcCCHHHHHHHHH-cCCCeeeccCCCCcchHHHHHHHHHHHHhCC
Confidence 5788988887322 22 222 135789999999999 9999888888888888888888888988889
Q ss_pred cEEEEeCCccC
Q psy7342 262 DLIFTSGGTGM 272 (338)
Q Consensus 262 DlVITTGGts~ 272 (338)
|+||..==+=+
T Consensus 168 DlvVLARYMqI 178 (287)
T COG0788 168 DLVVLARYMQI 178 (287)
T ss_pred CEEeehhhHhh
Confidence 99997654433
No 184
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=30.45 E-value=1.9e+02 Score=24.99 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=46.8
Q ss_pred EEEecCCCccCCeeecCcHHHHHHHHHcccCCE--EEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc--------
Q psy7342 202 LLALVSDRCFNKESEDKSGPLLAQLLQEDFQHA--HILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG-------- 271 (338)
Q Consensus 202 aIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~--v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts-------- 271 (338)
.++++||+. |.+-.-+-.++.+.-..+ +.+..-+.| ++.+.++.+++..+ ++=+++-+|.+.
T Consensus 30 ~~vs~Gn~~------dv~~~d~l~~~~~D~~t~~I~ly~E~~~d-~~~f~~~~~~a~~~-KPVv~lk~Grt~~g~~aa~s 101 (138)
T PF13607_consen 30 YVVSVGNEA------DVDFADLLEYLAEDPDTRVIVLYLEGIGD-GRRFLEAARRAARR-KPVVVLKAGRTEAGARAAAS 101 (138)
T ss_dssp EEEE-TT-S------SS-HHHHHHHHCT-SS--EEEEEES--S--HHHHHHHHHHHCCC-S-EEEEE-------------
T ss_pred EEEEeCccc------cCCHHHHHHHHhcCCCCCEEEEEccCCCC-HHHHHHHHHHHhcC-CCEEEEeCCCchhhhhhhhc
Confidence 468899985 444444444444313333 456666666 78888888888765 344444555322
Q ss_pred -----CCCCCChHHHHHhccccccCChHHHHHHh
Q psy7342 272 -----MSPRDVTPEAMNHLIDKKVPCIEHIIQTE 300 (338)
Q Consensus 272 -----~G~~D~t~eal~~l~~~~lpG~~e~~~~~ 300 (338)
.|+++....++++.+-..+..+.+++...
T Consensus 102 HTgslag~~~~~~a~~~~aGv~~v~~~~el~~~~ 135 (138)
T PF13607_consen 102 HTGSLAGDDAVYDAALRQAGVVRVDDLDELLDAA 135 (138)
T ss_dssp --------HHHHHHHHHHCTEEEESSHHHHHHHH
T ss_pred cCCcccCcHHHHHHHHHHcCceEECCHHHHHHHH
Confidence 24555666666777777888888776543
No 185
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=30.40 E-value=1.1e+02 Score=27.42 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=26.2
Q ss_pred CcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 218 KSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 218 sN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
.|-..+..+|++ .|.++... +++.+ +++ +|.||.+||
T Consensus 9 ~~~~~~~~~l~~-~g~~v~v~---~~~~~---------l~~--~d~iiipG~ 45 (198)
T cd01748 9 GNLRSVANALER-LGAEVIIT---SDPEE---------ILS--ADKLILPGV 45 (198)
T ss_pred ChHHHHHHHHHH-CCCeEEEE---cChHH---------hcc--CCEEEECCC
Confidence 477889999999 99876654 33221 334 799999775
No 186
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=30.33 E-value=1.2e+02 Score=28.13 Aligned_cols=65 Identities=23% Similarity=0.098 Sum_probs=45.6
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGM 272 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~ 272 (338)
.+++|.+.+. +|+..|--..+++.+|+. .|+++++.+. .=..+.+.+++.+ .++|+|-.|.-...
T Consensus 87 ~~~~vvl~t~-----~gd~HdiG~~iv~~~l~~-~G~~Vi~LG~-~vp~e~~v~~~~~----~~~~~V~lS~~~~~ 151 (213)
T cd02069 87 SKGKIVLATV-----KGDVHDIGKNLVGVILSN-NGYEVIDLGV-MVPIEKILEAAKE----HKADIIGLSGLLVP 151 (213)
T ss_pred CCCeEEEEeC-----CCchhHHHHHHHHHHHHh-CCCEEEECCC-CCCHHHHHHHHHH----cCCCEEEEccchhc
Confidence 3467655554 455677778899999999 9999999995 2224566666554 34899998765543
No 187
>PF11871 DUF3391: Domain of unknown function (DUF3391); InterPro: IPR021812 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is typically between 122 to 139 amino acids in length. This domain is found associated with PF01966 from PFAM.
Probab=30.09 E-value=57 Score=26.87 Aligned_cols=47 Identities=9% Similarity=0.129 Sum_probs=39.3
Q ss_pred CCCCCCCCccccc--ccCCCcccCCCceeChhcHHHHHhhCCCceeEeec
Q psy7342 150 SVLPPHINLAKPE--WTEKSQQYSTTQVIRPDTNHAQRCSTSMKYWELVR 197 (338)
Q Consensus 150 ~~~~~g~nVr~~G--i~~Ge~ll~~G~~l~p~~i~~lLas~Gi~~v~V~~ 197 (338)
..+++|.+|.... +...-.+.+.|..-+..+| ..|.+.|+.+|.+-.
T Consensus 8 ~~L~~GM~V~~~~~~w~~~pfl~~~f~I~s~~~I-~~L~~~gi~~V~Id~ 56 (128)
T PF11871_consen 8 DQLKPGMYVSRLDRSWLEHPFLFQGFLIKSQADI-EKLRRLGIQEVYIDP 56 (128)
T ss_pred HHCCCCcEEEecCCCccCCCeeeeceeECCHHHH-HHHHHCCCcEEEEEC
Confidence 4578999998877 7777777788888899999 999999999997543
No 188
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=30.05 E-value=1.7e+02 Score=26.99 Aligned_cols=53 Identities=9% Similarity=-0.024 Sum_probs=33.5
Q ss_pred ceEEEEecCCCccCCeeecCcH-HHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSG-PLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~-~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
+||+|+..+- +|. ..+...|++ .|+.+..... .+. + +++ +|.||..||.+.++
T Consensus 1 ~~v~Vl~~~G---------~n~~~~~~~al~~-~G~~~~~i~~-~~~-~---------l~~--~d~lilpGG~~~~d 54 (227)
T TIGR01737 1 MKVAVIRFPG---------TNCDRDTVYALRL-LGVDAEIVWY-EDG-S---------LPD--YDGVVLPGGFSYGD 54 (227)
T ss_pred CeEEEEeCCC---------cCcHHHHHHHHHH-CCCeEEEEec-CCC-C---------CCC--CCEEEECCCCcccc
Confidence 3678887532 232 334678888 9998776533 221 1 334 89999999987554
No 189
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=29.63 E-value=2.6e+02 Score=24.91 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=34.2
Q ss_pred HHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 220 GPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 220 ~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
...+.+.+++ .|+.+... ...+|++...+.++.+.+. ++|-||..+.
T Consensus 18 ~~~~~~~~~~-~g~~~~~~-~~~~~~~~~~~~i~~l~~~-~vdgiii~~~ 64 (268)
T cd06298 18 ARGIDDIATM-YKYNIILS-NSDNDKEKELKVLNNLLAK-QVDGIIFMGG 64 (268)
T ss_pred HHHHHHHHHH-cCCeEEEE-eCCCCHHHHHHHHHHHHHh-cCCEEEEeCC
Confidence 3445667888 89987655 3466788888888887764 5999998753
No 190
>KOG2598|consensus
Probab=29.60 E-value=2.5e+02 Score=29.48 Aligned_cols=79 Identities=15% Similarity=0.261 Sum_probs=58.1
Q ss_pred HHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCC-C----c-EEEEeCCccCCCCCChHHHHHhcc---cccc
Q psy7342 220 GPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSK-V----D-LIFTSGGTGMSPRDVTPEAMNHLI---DKKV 290 (338)
Q Consensus 220 ~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~-~----D-lVITTGGts~G~~D~t~eal~~l~---~~~l 290 (338)
...|.+.|+. ..++|+..+.+++. +|...+.+.++... . | ++++|-|.++-..|++.-.+++++ +...
T Consensus 81 ~qqidacL~D-i~C~VvKTGML~~~--~I~~vi~q~l~~~~~~klVvDPVivatsG~~l~~~divsl~~e~l~P~adilt 157 (523)
T KOG2598|consen 81 SQQIDACLSD-IKCDVVKTGMLPSP--EIVKVIEQSLQKFNIPKLVVDPVIVATSGSSLAGKDIVSLFIEELLPFADILT 157 (523)
T ss_pred HHHHHHHhhc-CcccEEeecCcCch--HHHHHHHHHHHhhcCcceeecceEEeccCCcccCCccHHHHHHHhhhhHHHhC
Confidence 3566777888 99999999999985 44455555444211 2 2 667999999999999988877765 4577
Q ss_pred CChHHHHHHhc
Q psy7342 291 PCIEHIIQTEG 301 (338)
Q Consensus 291 pG~~e~~~~~s 301 (338)
|-++|+|-.+.
T Consensus 158 PNI~Ea~~Ll~ 168 (523)
T KOG2598|consen 158 PNIPEAFILLK 168 (523)
T ss_pred CChHHHHHHHh
Confidence 88998887665
No 191
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=29.51 E-value=1.5e+02 Score=29.07 Aligned_cols=54 Identities=20% Similarity=0.126 Sum_probs=35.8
Q ss_pred cHHHHHHHHHcccCCEEEEEEEcCC-CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 219 SGPLLAQLLQEDFQHAHILKTCVPD-EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 219 N~~~L~~lL~~~~G~~v~~~~iV~D-d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
....+...|++ .|+.+.....-++ +.+.+.+.++.+.+. ++|+||-.||-|+-+
T Consensus 37 ~~~~v~~~l~~-~~i~~~~~~~~~~p~~~~v~~~~~~~~~~-~~d~IIavGGGs~~D 91 (349)
T cd08550 37 SRPRFEAALAK-SIIVVDVIVFGGECSTEEVVKALCGAEEQ-EADVIIGVGGGKTLD 91 (349)
T ss_pred HHHHHHHHHHh-cCCeeEEEEcCCCCCHHHHHHHHHHHHhc-CCCEEEEecCcHHHH
Confidence 45677788888 7865433222233 456677776666554 599999999987654
No 192
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=29.51 E-value=1.7e+02 Score=27.91 Aligned_cols=63 Identities=8% Similarity=0.046 Sum_probs=45.0
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
.+|++|...+.- |+ .....+...+++ .|++++....++.....+...+.++.+. ++|+|+++.
T Consensus 137 ~~v~~i~~~~~~--g~---~~~~~~~~~~~~-~G~~vv~~~~~~~~~~d~~~~v~~l~~~-~pd~V~~~~ 199 (333)
T cd06328 137 KKIATLAQDYAF--GR---DGVAAFKAALEK-LGAAIVTEEYAPTDTTDFTPYAQRLLDA-LKKVLFVIW 199 (333)
T ss_pred CeEEEEecCccc--cH---HHHHHHHHHHHh-CCCEEeeeeeCCCCCcchHHHHHHHHhc-CCCEEEEEe
Confidence 588988766642 21 223566888999 9999988877776666677777777665 599998764
No 193
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=29.49 E-value=76 Score=27.49 Aligned_cols=69 Identities=12% Similarity=0.082 Sum_probs=42.0
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHH-------HHHHHhCCCCcEEEEeCCcc
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDK-------LKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~a-------L~~a~~~~~~DlVITTGGts 271 (338)
.+|++|=.|. -|..++..|.+ .|+++..+..-++..+.+.+. ..++.++ +|+||+.=
T Consensus 2 ~~Ig~IGlG~----------mG~~~a~~L~~-~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~--~dvvi~~v--- 65 (163)
T PF03446_consen 2 MKIGFIGLGN----------MGSAMARNLAK-AGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQ--ADVVILCV--- 65 (163)
T ss_dssp BEEEEE--SH----------HHHHHHHHHHH-TTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHH--BSEEEE-S---
T ss_pred CEEEEEchHH----------HHHHHHHHHHh-cCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhc--ccceEeec---
Confidence 4667776663 35666666677 789888887665555555532 4666666 79999863
Q ss_pred CCCCCChHHHHHh
Q psy7342 272 MSPRDVTPEAMNH 284 (338)
Q Consensus 272 ~G~~D~t~eal~~ 284 (338)
.+.+-+.+++..
T Consensus 66 -~~~~~v~~v~~~ 77 (163)
T PF03446_consen 66 -PDDDAVEAVLFG 77 (163)
T ss_dssp -SSHHHHHHHHHC
T ss_pred -ccchhhhhhhhh
Confidence 344455666555
No 194
>PRK09065 glutamine amidotransferase; Provisional
Probab=29.47 E-value=1.3e+02 Score=27.95 Aligned_cols=64 Identities=9% Similarity=-0.001 Sum_probs=42.3
Q ss_pred ceEEEEecCCCcc-CCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccC
Q psy7342 199 TCHLLALVSDRCF-NKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGM 272 (338)
Q Consensus 199 prVaIIstGdEl~-~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~ 272 (338)
++++|+.+++.-- --..+..-+.++...+.. .|.++..+.+..++. + -+ +++ +|.||.+||-.-
T Consensus 2 ~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~----p~-~~~--~dgvvi~Gg~~~ 66 (237)
T PRK09065 2 KPLLIIQTGTPPPSIRARYGDFPHWIRVALGL-AEQPVVVVRVFAGEP--L----PA-PDD--FAGVIITGSWAM 66 (237)
T ss_pred CcEEEEECCCCChhHHhhcCCHHHHHHHHhcc-CCceEEEEeccCCCC--C----CC-hhh--cCEEEEeCCCcc
Confidence 4589998887421 112345678888889988 898887776665432 1 11 233 799999998754
No 195
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=29.43 E-value=1e+02 Score=30.69 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=36.1
Q ss_pred HHHHHHHHcccCCEEEEEEEc-CC-CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 221 PLLAQLLQEDFQHAHILKTCV-PD-EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~iV-~D-d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
..+...|++ .|.++..+.-+ ++ +.+.+.+.++.+.+. ++|+||-.||-|+-+
T Consensus 44 ~~v~~~L~~-~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~-~~d~IIaiGGGS~~D 97 (374)
T cd08189 44 DKVLEALEG-AGIEYAVYDGVPPDPTIENVEAGLALYREN-GCDAILAVGGGSVID 97 (374)
T ss_pred HHHHHHHHh-cCCeEEEeCCCCCCcCHHHHHHHHHHHHhc-CCCEEEEeCCccHHH
Confidence 457778888 88877666433 33 245577776666554 699999999977654
No 196
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=29.42 E-value=86 Score=31.47 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=36.8
Q ss_pred cHHHHHHHHHcccCCEEEEEE-EcCC-CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 219 SGPLLAQLLQEDFQHAHILKT-CVPD-EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 219 N~~~L~~lL~~~~G~~v~~~~-iV~D-d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
-...+...|++ .|+++..+. +-++ +.+.+.+.++.+.+ .++|+||-.||-|+.+
T Consensus 37 ~~~~v~~~L~~-~gi~~~~f~~v~~~p~~~~v~~~~~~~~~-~~~D~IIaiGGGS~iD 92 (398)
T cd08178 37 YVDKVIDVLKR-RGVETEVFSDVEPDPSLETVRKGLELMNS-FKPDTIIALGGGSPMD 92 (398)
T ss_pred cHHHHHHHHHH-CCCeEEEecCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCCccHHH
Confidence 44567788988 898876554 3333 23556666665554 4699999999977655
No 197
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=29.11 E-value=2.7e+02 Score=24.76 Aligned_cols=47 Identities=21% Similarity=0.076 Sum_probs=34.1
Q ss_pred HHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 220 GPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 220 ~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
...+...+++ .|+.+.... ..+|++...+.++++..+ ++|.||.++.
T Consensus 18 ~~gi~~~~~~-~g~~~~~~~-~~~~~~~~~~~i~~l~~~-~~dgii~~~~ 64 (259)
T cd01542 18 VKGILAALYE-NGYQMLLMN-TNFSIEKEIEALELLARQ-KVDGIILLAT 64 (259)
T ss_pred HHHHHHHHHH-CCCEEEEEe-CCCCHHHHHHHHHHHHhc-CCCEEEEeCC
Confidence 3445566778 899876553 356788888888887765 5999999864
No 198
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=29.04 E-value=1.1e+02 Score=30.04 Aligned_cols=55 Identities=9% Similarity=0.093 Sum_probs=37.5
Q ss_pred cCcHHHHHHHHHcccCCEEEEE--EEcCC-CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 217 DKSGPLLAQLLQEDFQHAHILK--TCVPD-EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 217 DsN~~~L~~lL~~~~G~~v~~~--~iV~D-d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
+..+..+...|++ .|+++..+ ...++ +.+.+.+.++.+.+ ++|+||-.||=++.+
T Consensus 37 ~~~~~~i~~~L~~-~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~--~~d~IIaiGGGsv~D 94 (332)
T cd08549 37 KVAGKEIIERLES-NNFTKEVLERDSLLIPDEYELGEVLIKLDK--DTEFLLGIGSGTIID 94 (332)
T ss_pred HHHHHHHHHHHHH-cCCeEEEEecCCCCCCCHHHHHHHHHHhhc--CCCEEEEECCcHHHH
Confidence 3345778888888 88755322 33343 56777777766655 499999999987765
No 199
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=28.63 E-value=1.1e+02 Score=30.53 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=36.5
Q ss_pred HHHHHHHHcccCCEEEEEE-EcCC-CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 221 PLLAQLLQEDFQHAHILKT-CVPD-EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~-iV~D-d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
..+.+.|++ .|+++..+. +.++ +.+.+.+.++.+.+. ++|.||-.||=|+-+
T Consensus 42 ~~v~~~L~~-~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~-~~D~IIavGGGSviD 95 (375)
T cd08179 42 DKVEAYLKE-AGIEVEVFEGVEPDPSVETVLKGAEAMREF-EPDWIIALGGGSPID 95 (375)
T ss_pred HHHHHHHHH-cCCeEEEeCCCCCCcCHHHHHHHHHHHHhc-CCCEEEEeCCccHHH
Confidence 567788888 898876654 3333 345577766665554 699999999987655
No 200
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.50 E-value=2.9e+02 Score=24.80 Aligned_cols=47 Identities=9% Similarity=-0.030 Sum_probs=33.3
Q ss_pred cHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 219 SGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 219 N~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
--..+...+++ .|+.+... ...+|.+.-.+.++.+... ++|-||..+
T Consensus 17 ~~~gi~~~~~~-~g~~~~~~-~~~~~~~~~~~~i~~l~~~-~vdgiIi~~ 63 (273)
T cd06292 17 FAEAIEAALAQ-YGYTVLLC-NTYRGGVSEADYVEDLLAR-GVRGVVFIS 63 (273)
T ss_pred HHHHHHHHHHH-CCCEEEEE-eCCCChHHHHHHHHHHHHc-CCCEEEEeC
Confidence 34566777888 99987543 3445677777778877775 599888876
No 201
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=28.43 E-value=51 Score=28.28 Aligned_cols=39 Identities=18% Similarity=0.353 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhCCCCcEEEEeCCccCC--CCCChHHHHHhc
Q psy7342 247 EIKDKLKYWVDQSKVDLIFTSGGTGMS--PRDVTPEAMNHL 285 (338)
Q Consensus 247 ~I~~aL~~a~~~~~~DlVITTGGts~G--~~D~t~eal~~l 285 (338)
.|..++.+...+.++|+|+..+++-.+ ..|+|.+++..+
T Consensus 117 ~i~~~v~~~a~~~g~~~Vl~~~~vly~~~~~DIT~~Vi~~L 157 (158)
T PF03938_consen 117 KINKAVEEYAKENGYDLVLDKNAVLYADPAYDITDEVIKAL 157 (158)
T ss_dssp HHHHHHHHHHHHTT-SEEEEGGGEEEE-TTSE-HHHHHHH-
T ss_pred HHHHHHHHHHHHcCCeEEEeCCceEeeCCCCChHHHHHHHh
Confidence 455556666666689999999985544 669999998764
No 202
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=28.40 E-value=1.5e+02 Score=26.99 Aligned_cols=49 Identities=10% Similarity=-0.012 Sum_probs=33.7
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
.||+||-.|. .|-..+...|++ .|+.+ ...++. +++. +++ +|.||..|+
T Consensus 2 ~~~~iid~g~---------gn~~s~~~al~~-~g~~~-~v~~~~-~~~~--------l~~--~d~lIlpG~ 50 (209)
T PRK13146 2 MTVAIIDYGS---------GNLRSAAKALER-AGAGA-DVVVTA-DPDA--------VAA--ADRVVLPGV 50 (209)
T ss_pred CeEEEEECCC---------ChHHHHHHHHHH-cCCCc-cEEEEC-CHHH--------hcC--CCEEEECCC
Confidence 5788888775 366778899999 99854 333343 3333 244 899999885
No 203
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=27.99 E-value=2.8e+02 Score=27.57 Aligned_cols=97 Identities=11% Similarity=0.011 Sum_probs=56.8
Q ss_pred HHHhhCCCc---eeEeecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEE--E-EcCCCHHHHHHHHHHHH
Q psy7342 183 AQRCSTSMK---YWELVRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILK--T-CVPDEMEEIKDKLKYWV 256 (338)
Q Consensus 183 ~lLas~Gi~---~v~V~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~--~-iV~Dd~e~I~~aL~~a~ 256 (338)
.++.+++.. ...--...+++++..|..- .+-.+.....=...+++++|.++... . .-+++.+.+.+.++++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--D~s~n~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~a 94 (345)
T COG1744 17 LLLAACGASLAGAAAAGKKKKVAVIDVGGID--DKSFNQSAYEGLLKAKKELGLKVETYYWEYVQSDSEADYERALRALA 94 (345)
T ss_pred HHHHHhcCCCccccccccceEEEEEecCCCC--ccchhHHHHHHHHHHHHHhCCceEeeeeeecCCcchhHHHHHHHHHH
Confidence 445555542 1211235667777766542 22233333332334444377665542 2 45566888999999888
Q ss_pred hCCCCcEEEEeCCccCCCCCChHHHHHhc
Q psy7342 257 DQSKVDLIFTSGGTGMSPRDVTPEAMNHL 285 (338)
Q Consensus 257 ~~~~~DlVITTGGts~G~~D~t~eal~~l 285 (338)
++ ++|+|+++| .+-.|.+.++..+.
T Consensus 95 ~~-g~~lI~~~g---f~~~d~~~~va~~~ 119 (345)
T COG1744 95 ED-GYDLIFGTG---FAFSDALEKVAAEY 119 (345)
T ss_pred hc-CCCEEEEec---cchhhHHHHHHHHC
Confidence 76 589999776 56677777776664
No 204
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=27.84 E-value=1.1e+02 Score=30.56 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=35.7
Q ss_pred HHHHHHHHcccCCEEEEEE-EcCC-CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 221 PLLAQLLQEDFQHAHILKT-CVPD-EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~-iV~D-d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
..+...|++ .|+++..+. +-++ +.+.+.+.++.+.+. ++|+||-.||-|+.+
T Consensus 45 ~~v~~~L~~-~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~-~~D~IIaiGGGS~iD 98 (383)
T cd08186 45 DKVEPALDE-HGIEYVLYNKVTPNPTVDQVDEAAKLGREF-GAQAVIAIGGGSPID 98 (383)
T ss_pred HHHHHHHHH-cCCeEEEeCCCCCCCCHHHHHHHHHHHHHc-CCCEEEEeCCccHHH
Confidence 467788888 898776664 3333 345566666655543 699999999977655
No 205
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=27.72 E-value=1.5e+02 Score=29.51 Aligned_cols=51 Identities=14% Similarity=-0.007 Sum_probs=31.0
Q ss_pred HHHHHHHcccCCEEEEEE-EcCCC-HHHHHHHHHHHHhC--CCCcEEEEeCCccCC
Q psy7342 222 LLAQLLQEDFQHAHILKT-CVPDE-MEEIKDKLKYWVDQ--SKVDLIFTSGGTGMS 273 (338)
Q Consensus 222 ~L~~lL~~~~G~~v~~~~-iV~Dd-~e~I~~aL~~a~~~--~~~DlVITTGGts~G 273 (338)
.+...|++ .|.++..+. +.++- .+.+.+..+.+.+. .++|.||-.||-|.=
T Consensus 40 ~v~~~L~~-~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGGGS~i 94 (347)
T cd08184 40 DLISRLPV-ESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGGGSTL 94 (347)
T ss_pred HHHHHHHh-cCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCCcHHH
Confidence 45566888 788765553 44433 34455655544432 159999999987653
No 206
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=27.70 E-value=91 Score=29.28 Aligned_cols=80 Identities=14% Similarity=0.037 Sum_probs=42.2
Q ss_pred cCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhc
Q psy7342 206 VSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHL 285 (338)
Q Consensus 206 tGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l 285 (338)
+|+.......|++-...|.....+ ++..+...-+=+++.+.. ...+.++. +|-||.+||-+.-..+-..++++..
T Consensus 6 vg~~~~~~day~s~~~~L~~a~~~-~~~~v~~~~i~~~~~~~~--~~~~~l~~--~dgivl~GG~~~~~~~~~~~~i~~~ 80 (235)
T cd01746 6 VGKYVELPDAYLSVLEALKHAGIA-LGVKLEIKWIDSEDLEEE--NAEEALKG--ADGILVPGGFGIRGVEGKILAIKYA 80 (235)
T ss_pred EECCcCCHHHHHHHHHHHHHHHHH-cCCeeEEEEeChhhcCcc--chhhhhcc--CCEEEECCCCCCcchhhHHHHHHHH
Confidence 455433334455556666666666 666554443333222221 11223444 8999999988765544444555555
Q ss_pred ccccc
Q psy7342 286 IDKKV 290 (338)
Q Consensus 286 ~~~~l 290 (338)
.+..+
T Consensus 81 ~~~~~ 85 (235)
T cd01746 81 RENNI 85 (235)
T ss_pred HHCCc
Confidence 54433
No 207
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=27.65 E-value=1.2e+02 Score=26.10 Aligned_cols=68 Identities=13% Similarity=-0.036 Sum_probs=37.0
Q ss_pred EEEEecCCCccCCeeecCc---HHHHHHHHHcccCCEEEEEEEcCCCH-------HHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 201 HLLALVSDRCFNKESEDKS---GPLLAQLLQEDFQHAHILKTCVPDEM-------EEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 201 VaIIstGdEl~~G~i~DsN---~~~L~~lL~~~~G~~v~~~~iV~Dd~-------e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
|.|+..||.+..|.-.... ...|+..|. .++.+...++-.+.. ....+.+.+.+.. .+|+|+...|+
T Consensus 1 ~~i~~~GDSit~G~~~~~~~~~~~~l~~~l~--~~~~v~N~g~~G~t~~~~~~~~~~~~~~~~~~~~~-~pd~Vii~~G~ 77 (188)
T cd01827 1 IKVACVGNSITEGAGLRAYDSYPSPLAQMLG--DGYEVGNFGKSARTVLNKGDHPYMNEERYKNALAF-NPNIVIIKLGT 77 (188)
T ss_pred CeEEEEecccccccCCCCCCchHHHHHHHhC--CCCeEEeccCCcceeecCCCcCccchHHHHHhhcc-CCCEEEEEccc
Confidence 3578889999877543322 223444442 235666666544421 1112333344443 48999988887
Q ss_pred c
Q psy7342 271 G 271 (338)
Q Consensus 271 s 271 (338)
=
T Consensus 78 N 78 (188)
T cd01827 78 N 78 (188)
T ss_pred C
Confidence 4
No 208
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=27.58 E-value=1.2e+02 Score=30.22 Aligned_cols=52 Identities=19% Similarity=0.333 Sum_probs=37.0
Q ss_pred HHHHHHHHcccCCEEEEE-EEcCCC-HHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 221 PLLAQLLQEDFQHAHILK-TCVPDE-MEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~-~iV~Dd-~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
..+.+.|++ .|+++..+ ++.+|- .+.+.+.++.+.+. ++|.||-.||-|+-+
T Consensus 47 ~~v~~~L~~-~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~-~~D~IIaiGGGS~iD 100 (382)
T cd08187 47 DRVIASLKE-AGIEVVELGGVEPNPRLETVREGIELCKEE-KVDFILAVGGGSVID 100 (382)
T ss_pred HHHHHHHHH-cCCeEEEECCccCCCCHHHHHHHHHHHHHc-CCCEEEEeCChHHHH
Confidence 557788888 89887655 455543 56677777766554 699999999876654
No 209
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=27.35 E-value=1.1e+02 Score=30.45 Aligned_cols=53 Identities=19% Similarity=0.301 Sum_probs=35.8
Q ss_pred cHHHHHHHHHcccCCEEEEEE-EcC-CCHHHHHHHHHHHHhCCCCcEEEEeCCccCC
Q psy7342 219 SGPLLAQLLQEDFQHAHILKT-CVP-DEMEEIKDKLKYWVDQSKVDLIFTSGGTGMS 273 (338)
Q Consensus 219 N~~~L~~lL~~~~G~~v~~~~-iV~-Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G 273 (338)
-...+...|++ .|.++..+. +.+ -+.+.+.+.++.+.+. ++|+||-.||-|+=
T Consensus 44 ~~~~v~~~L~~-~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~-~~D~IIavGGGS~i 98 (377)
T cd08176 44 VVEKVTDVLDE-AGIDYVIYDGVKPNPTITNVKDGLAVFKKE-GCDFIISIGGGSPH 98 (377)
T ss_pred cHHHHHHHHHH-cCCeEEEeCCCCCCCCHHHHHHHHHHHHhc-CCCEEEEeCCcHHH
Confidence 34567888888 888876664 333 2345566666655443 69999999987653
No 210
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=27.20 E-value=2.1e+02 Score=27.02 Aligned_cols=65 Identities=6% Similarity=0.014 Sum_probs=43.1
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
..+++++...++- | ......+...+++ .|+++.....++.....+...+.++.+. ++|+|+..+.
T Consensus 141 ~~~v~~v~~~~~~--g---~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~d~~~~v~~l~~~-~~d~i~~~~~ 205 (345)
T cd06338 141 PKKVAILYADDPF--S---QDVAEGAREKAEA-AGLEVVYDETYPPGTADLSPLISKAKAA-GPDAVVVAGH 205 (345)
T ss_pred CceEEEEecCCcc--c---HHHHHHHHHHHHH-cCCEEEEEeccCCCccchHHHHHHHHhc-CCCEEEECCc
Confidence 3567787654431 2 2345667788888 9999887666665445566666666554 5899987653
No 211
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=26.97 E-value=2.8e+02 Score=25.60 Aligned_cols=50 Identities=12% Similarity=0.209 Sum_probs=36.3
Q ss_pred cCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 217 DKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 217 DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
......+.+.+++ .|+.+..... .++++...+.++.++.. ++|-||..+.
T Consensus 15 ~~~~~gi~~~a~~-~g~~~~~~~~-~~~~~~~~~~i~~~~~~-~vdgiii~~~ 64 (288)
T cd01538 15 IRDRPNFEAALKE-LGAEVIVQNA-NGDPAKQISQIENMIAK-GVDVLVIAPV 64 (288)
T ss_pred HHHHHHHHHHHHH-cCCEEEEECC-CCCHHHHHHHHHHHHHc-CCCEEEEecC
Confidence 3444566777888 9998776544 45677778888888775 5999888763
No 212
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=26.96 E-value=1.7e+02 Score=27.63 Aligned_cols=64 Identities=8% Similarity=0.030 Sum_probs=42.5
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
.+++++...+.. | +.....+...+++ .|.+++.....+.....+...+.++... ++|+|+..|.
T Consensus 136 ~~v~ii~~~~~~--g---~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~d~~~~v~~l~~~-~~d~v~~~~~ 199 (340)
T cd06349 136 KKVAILSVNTDW--G---RTSADIFVKAAEK-LGGQVVAHEEYVPGEKDFRPTITRLRDA-NPDAIILISY 199 (340)
T ss_pred cEEEEEecCChH--h---HHHHHHHHHHHHH-cCCEEEEEEEeCCCCCcHHHHHHHHHhc-CCCEEEEccc
Confidence 467887765541 2 2345678888899 9999887665554444555666665554 5899988763
No 213
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.96 E-value=2.2e+02 Score=25.63 Aligned_cols=47 Identities=9% Similarity=0.005 Sum_probs=33.4
Q ss_pred HHHHHHHHHcccCCEEEEEEEc-CCCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 220 GPLLAQLLQEDFQHAHILKTCV-PDEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 220 ~~~L~~lL~~~~G~~v~~~~iV-~Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
...+...+++ .|+.+.....- ..|++...+.++.++.. ++|-||..+
T Consensus 18 ~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~i~~l~~~-~vdgvii~~ 65 (273)
T cd06310 18 KAGAEAAAKE-LGVKVTFQGPASETDVAGQVNLLENAIAR-GPDAILLAP 65 (273)
T ss_pred HHHHHHHHHH-cCCEEEEecCccCCCHHHHHHHHHHHHHh-CCCEEEEcC
Confidence 3455667888 89987665331 45777888888887765 599888865
No 214
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=26.90 E-value=80 Score=21.29 Aligned_cols=36 Identities=6% Similarity=-0.044 Sum_probs=25.8
Q ss_pred ceEEEEecCCCcc-CCeeecCcHHHHHHHHHcccCCEE
Q psy7342 199 TCHLLALVSDRCF-NKESEDKSGPLLAQLLQEDFQHAH 235 (338)
Q Consensus 199 prVaIIstGdEl~-~G~i~DsN~~~L~~lL~~~~G~~v 235 (338)
.+++|+..|+.+. .-.++.|...+|...+++ .|.++
T Consensus 1 mkiai~n~gnni~~fkt~p~setiyl~~~~~~-mgl~v 37 (38)
T PF09198_consen 1 MKIAIINMGNNIQNFKTTPSSETIYLFKCISD-MGLNV 37 (38)
T ss_dssp -EEEEEESSS--SSSSSHHHHHHHHHHHHHHT-TT-EE
T ss_pred CeEEEEecCCceeceeecCccceEeHHHHHHH-hCCCC
Confidence 4789999999876 345567778889999999 98775
No 215
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=26.89 E-value=1.6e+02 Score=23.54 Aligned_cols=52 Identities=19% Similarity=0.086 Sum_probs=36.8
Q ss_pred CeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 213 KESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 213 G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
+.....+..+++..+++ .|+++...+. ....+.+.+.+.+ .++|+|..|.-+
T Consensus 9 ~~~h~lg~~~~~~~l~~-~G~~v~~l~~-~~~~~~~~~~i~~----~~pdiV~iS~~~ 60 (125)
T cd02065 9 GDVHDIGKNIVAIALRD-NGFEVIDLGV-DVPPEEIVEAAKE----EDADVVGLSALS 60 (125)
T ss_pred CchhhHHHHHHHHHHHH-CCCEEEEcCC-CCCHHHHHHHHHH----cCCCEEEEecch
Confidence 34456677888999999 9999888865 3445666666665 238999887644
No 216
>PRK05337 beta-hexosaminidase; Provisional
Probab=26.61 E-value=1.2e+02 Score=30.24 Aligned_cols=60 Identities=15% Similarity=0.314 Sum_probs=40.0
Q ss_pred cCcHHHHHHHHHcccCCEEEEEEEcCCCHH--------HHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhc
Q psy7342 217 DKSGPLLAQLLQEDFQHAHILKTCVPDEME--------EIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHL 285 (338)
Q Consensus 217 DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e--------~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l 285 (338)
-.|..+|..+|+++|||+= -++.|+.+ ...++...++.. ++|+++.+.+ .|...++++.+
T Consensus 226 ~~S~~~l~~lLR~elGF~G---~ViSD~l~m~a~~~~~~~~~~~~~al~A-G~Dl~l~~~~-----~~~~~~~~~~l 293 (337)
T PRK05337 226 GFSRYWLQDILRQELGFDG---VIFSDDLSMEGAAVAGDYAERAQAALDA-GCDMVLVCNN-----RDGAVSVLDNL 293 (337)
T ss_pred cCCHHHHHHHHHHhcCCCE---EEEecchhhhhhhhcCCHHHHHHHHHHc-CCCEEeeCCC-----HHHHHHHHHHH
Confidence 3466778889998899863 36677753 245566677776 5999988754 24455555544
No 217
>KOG0025|consensus
Probab=26.46 E-value=1.3e+02 Score=29.96 Aligned_cols=107 Identities=16% Similarity=0.080 Sum_probs=62.7
Q ss_pred CCCCCCcccc----c------ccCCCcccCCCceeChhcHHHHHhhCCCceeEeecCce-EEEEecCCCccCCeeecCcH
Q psy7342 152 LPPHINLAKP----E------WTEKSQQYSTTQVIRPDTNHAQRCSTSMKYWELVRSTC-HLLALVSDRCFNKESEDKSG 220 (338)
Q Consensus 152 ~~~g~nVr~~----G------i~~Ge~ll~~G~~l~p~~i~~lLas~Gi~~v~V~~~pr-VaIIstGdEl~~G~i~DsN~ 220 (338)
+++|++|.+- | +..++-+++-...+. + ...|...+.-..-|+.++ .-=+--||.+...---..-|
T Consensus 99 fk~Gd~VIp~~a~lGtW~t~~v~~e~~Li~vd~~~p---l-~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG 174 (354)
T KOG0025|consen 99 FKPGDWVIPLSANLGTWRTEAVFSESDLIKVDKDIP---L-ASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVG 174 (354)
T ss_pred cCCCCeEeecCCCCccceeeEeecccceEEcCCcCC---h-hhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHH
Confidence 5566666542 2 444555555555552 4 445555544333233221 11122266543221222336
Q ss_pred HHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEe
Q psy7342 221 PLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTS 267 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITT 267 (338)
...-++.+. +|+..+..-.=+||.+++++.|+.. ++|-|||-
T Consensus 175 ~~ViQlaka-~GiktinvVRdR~~ieel~~~Lk~l----GA~~ViTe 216 (354)
T KOG0025|consen 175 QAVIQLAKA-LGIKTINVVRDRPNIEELKKQLKSL----GATEVITE 216 (354)
T ss_pred HHHHHHHHH-hCcceEEEeecCccHHHHHHHHHHc----CCceEecH
Confidence 677788888 9999888878888999999999873 47999973
No 218
>PLN02834 3-dehydroquinate synthase
Probab=26.39 E-value=1.7e+02 Score=30.15 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=39.1
Q ss_pred cCcHHHHHHHHHcccCCEEEEE-EEcCC-----CHHHHHHHHHHHHhCCCCc---EEEEeCCccCCC
Q psy7342 217 DKSGPLLAQLLQEDFQHAHILK-TCVPD-----EMEEIKDKLKYWVDQSKVD---LIFTSGGTGMSP 274 (338)
Q Consensus 217 DsN~~~L~~lL~~~~G~~v~~~-~iV~D-----d~e~I~~aL~~a~~~~~~D---lVITTGGts~G~ 274 (338)
+.-...+...|++ .|+++..+ .+++| +.+.+.+.++.+.+. ++| +||-.||-++++
T Consensus 113 ~~~~~~v~~~L~~-~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~-~~dr~~~VIAiGGGsv~D 177 (433)
T PLN02834 113 PLYLEKVVEALTA-KGPELTVESVILPDGEKYKDMETLMKVFDKALES-RLDRRCTFVALGGGVIGD 177 (433)
T ss_pred HHHHHHHHHHHHh-cCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhc-CCCcCcEEEEECChHHHH
Confidence 3455667788888 88865443 34565 677777777776654 466 999999987765
No 219
>PRK05637 anthranilate synthase component II; Provisional
Probab=26.27 E-value=1.6e+02 Score=27.04 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=32.6
Q ss_pred ecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCC
Q psy7342 216 EDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMS 273 (338)
Q Consensus 216 ~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G 273 (338)
+|++.+.+..+|++ .|..+. +++.|.. + +.+. .. .+|.||.+||-|--
T Consensus 10 ~dsf~~nl~~~l~~-~g~~~~---v~~~~~~-~-~~l~---~~-~~~~iIlsgGPg~~ 57 (208)
T PRK05637 10 HDSFVYNLVDAFAV-AGYKCT---VFRNTVP-V-EEIL---AA-NPDLICLSPGPGHP 57 (208)
T ss_pred CcCHHHHHHHHHHH-CCCcEE---EEeCCCC-H-HHHH---hc-CCCEEEEeCCCCCH
Confidence 46899999999999 997654 5555421 1 1122 11 37999999998753
No 220
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=26.02 E-value=1.9e+02 Score=27.31 Aligned_cols=63 Identities=11% Similarity=0.063 Sum_probs=44.1
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
.+|++|...++ .| ......+...+++ .|.+++....++.+...+...+.++... ++|.|+..|
T Consensus 133 ~~v~il~~d~~--~g---~~~~~~~~~~~~~-~G~~vv~~~~~~~~~~d~~~~v~~~~~~-~~d~v~~~~ 195 (333)
T cd06331 133 KRFYLIGSDYV--WP---RESNRIARALLEE-LGGEVVGEEYLPLGTSDFGSVIEKIKAA-GPDVVLSTL 195 (333)
T ss_pred CeEEEECCCch--hH---HHHHHHHHHHHHH-cCCEEEEEEEecCCcccHHHHHHHHHHc-CCCEEEEec
Confidence 56888865443 12 2345777888999 9999987777776666677777776654 589988664
No 221
>PRK11914 diacylglycerol kinase; Reviewed
Probab=25.94 E-value=2.2e+02 Score=27.16 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=30.2
Q ss_pred HHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccC
Q psy7342 222 LLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGM 272 (338)
Q Consensus 222 ~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~ 272 (338)
.+...|++ .|+++..+ .........+..+++.++ ++|+||..||=|.
T Consensus 30 ~~~~~l~~-~g~~~~~~--~t~~~~~~~~~a~~~~~~-~~d~vvv~GGDGT 76 (306)
T PRK11914 30 RAIARLHH-RGVDVVEI--VGTDAHDARHLVAAALAK-GTDALVVVGGDGV 76 (306)
T ss_pred HHHHHHHH-cCCeEEEE--EeCCHHHHHHHHHHHHhc-CCCEEEEECCchH
Confidence 45667888 88876543 233344455555555544 4899999999774
No 222
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=25.72 E-value=1.6e+02 Score=28.51 Aligned_cols=60 Identities=10% Similarity=0.117 Sum_probs=37.9
Q ss_pred HHHHHHHHcccCCEEEEEEE--cCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhc
Q psy7342 221 PLLAQLLQEDFQHAHILKTC--VPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHL 285 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~i--V~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l 285 (338)
..+...+++ +|.....+.+ .+|..+.+..+++ ++.++.+|.++ +||++.+ +++..++.+.
T Consensus 48 ~~I~~~~~~-~~l~~~~ieIi~~~~~~~s~~~a~~-lv~~G~aD~~v-sg~~~T~--a~l~~~l~~~ 109 (294)
T TIGR02706 48 EKINEIAKK-IGMNLDDVEIVNAPSPKKAALLAVR-LVSTGKADMLM-KGLVDTA--TFLRSVLNKE 109 (294)
T ss_pred HHHHHHHHH-cCCCccCcEEECCCCcHHHHHHHHH-HHHCCCCCEEE-eCCcCHH--HHHHHHhhhc
Confidence 456777777 7654333333 3566777777766 45555799998 7886533 6665555543
No 223
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=25.63 E-value=1.8e+02 Score=28.60 Aligned_cols=54 Identities=11% Similarity=0.142 Sum_probs=38.4
Q ss_pred cHHHHHHHHHcccCCEEEEEEEcC--CCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 219 SGPLLAQLLQEDFQHAHILKTCVP--DEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 219 N~~~L~~lL~~~~G~~v~~~~iV~--Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
-...+...|++ .|.++..+.-+. -+.+.+.+.++.+.+. ++|.||-.||-|+-+
T Consensus 39 ~~~~v~~~L~~-~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~d~IiaiGGGs~~D 94 (370)
T cd08551 39 VLDKVIDSLKE-AGIEVVIFDGVEPNPTLSNVDAAVAAYREE-GCDGVIAVGGGSVLD 94 (370)
T ss_pred cHHHHHHHHHH-cCCeEEEECCCCCCCCHHHHHHHHHHHHhc-CCCEEEEeCCchHHH
Confidence 34567788888 888776554333 3567788887776654 599999999977654
No 224
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=25.61 E-value=1.9e+02 Score=28.29 Aligned_cols=53 Identities=15% Similarity=0.063 Sum_probs=36.2
Q ss_pred HHHHHHHHHcccCCEEEEEEEcCC--CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 220 GPLLAQLLQEDFQHAHILKTCVPD--EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 220 ~~~L~~lL~~~~G~~v~~~~iV~D--d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
...+...|++ .|.++..+..+.. +.+.+.+.++.+.+ .++|+||-.||=|+-+
T Consensus 38 ~~~v~~~l~~-~~~~~~~~~~~~~~p~~~~v~~~~~~~~~-~~~d~iiavGGGs~~D 92 (345)
T cd08171 38 KDKIKAALEQ-SGIEITDFIWYGGESTYENVERLKKNPAV-QEADMIFAVGGGKAID 92 (345)
T ss_pred HHHHHHHHHH-CCCeEEEEEecCCCCCHHHHHHHHHHHhh-cCCCEEEEeCCcHHHH
Confidence 5677788888 8888765554433 34556666555444 3699999999877654
No 225
>PRK05723 flavodoxin; Provisional
Probab=25.43 E-value=65 Score=28.10 Aligned_cols=60 Identities=10% Similarity=0.082 Sum_probs=42.9
Q ss_pred ecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEE-EEEEcCCCH-HHHHHHHHHHHh
Q psy7342 196 VRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHI-LKTCVPDEM-EEIKDKLKYWVD 257 (338)
Q Consensus 196 ~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~-~~~iV~Dd~-e~I~~aL~~a~~ 257 (338)
....+++|+-.||. ..+..+...+..|...|++ .|.+-+ ....+-++. ..+.+.+..|++
T Consensus 82 l~~~~~aVfGLGDs-~Y~~~Fc~a~~~ld~~L~~-lGA~rv~~~~~~D~~~~~~~e~~~~~W~~ 143 (151)
T PRK05723 82 WRGLPGAVIALGDS-SYGDTFCGGGEQMRELFAE-LGVREVQPMLRLDASETVTPETDAEPWLA 143 (151)
T ss_pred CCCCEEEEEeEeCC-cchHHHhHHHHHHHHHHHH-CCCcEeeccEEeecCCCCChHHHHHHHHH
Confidence 45678999999999 4456678889999999999 998654 443443332 356666676665
No 226
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=25.31 E-value=2.6e+02 Score=26.93 Aligned_cols=67 Identities=10% Similarity=0.106 Sum_probs=47.6
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
++.+|+++..+-+ ....+.-...+...+++ .|+.+.... ..++.+...+.++.++.+ ++|-||.++.
T Consensus 24 ~~~~Ig~i~~~~~---~~f~~~~~~gi~~~a~~-~g~~l~i~~-~~~~~~~~~~~i~~l~~~-~vDGiIi~~~ 90 (330)
T PRK10355 24 KEVKIGMAIDDLR---LERWQKDRDIFVKKAES-LGAKVFVQS-ANGNEETQMSQIENMINR-GVDVLVIIPY 90 (330)
T ss_pred CCceEEEEecCCC---chHHHHHHHHHHHHHHH-cCCEEEEEC-CCCCHHHHHHHHHHHHHc-CCCEEEEeCC
Confidence 6789999885432 23344445567778888 999887653 356777788888888775 5999998753
No 227
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=25.29 E-value=1.9e+02 Score=27.63 Aligned_cols=73 Identities=14% Similarity=0.103 Sum_probs=44.3
Q ss_pred EEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcC-------CCHHHHHHHHHHHHhCCCCcEEEEeCCccCC
Q psy7342 201 HLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVP-------DEMEEIKDKLKYWVDQSKVDLIFTSGGTGMS 273 (338)
Q Consensus 201 VaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~-------Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G 273 (338)
|+||+-++-+..- .+-....+.|++ +|+++.....+- .+.++=.+.|.+++.+..+|.|+++-| |-|
T Consensus 1 I~iiapSs~~~~~----~~~~~~~~~L~~-~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rG-G~g 74 (282)
T cd07025 1 IGIVAPSSPIDEE----ERLERAIARLES-LGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARG-GYG 74 (282)
T ss_pred CEEEeCCCCCCcH----HHHHHHHHHHHh-CCCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCCEEEEcCC-cCC
Confidence 4566665543211 455666778899 999987666433 334455566677776656899996655 444
Q ss_pred CCCChH
Q psy7342 274 PRDVTP 279 (338)
Q Consensus 274 ~~D~t~ 279 (338)
...+.+
T Consensus 75 a~rlL~ 80 (282)
T cd07025 75 ANRLLP 80 (282)
T ss_pred HHHhhh
Confidence 433333
No 228
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.25 E-value=2.6e+02 Score=25.73 Aligned_cols=44 Identities=11% Similarity=0.063 Sum_probs=30.9
Q ss_pred HHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 223 LAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 223 L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
+...+++ .|+++.....-..+.+...+.++.++.+ ++|-||..+
T Consensus 21 i~~~a~~-~g~~~~~~~~~~~~~~~~~~~l~~~~~~-~~dgiii~~ 64 (294)
T cd06316 21 AKDEFAK-LGIEVVATTDAQFDPAKQVADIETTISQ-KPDIIISIP 64 (294)
T ss_pred HHHHHHH-cCCEEEEecCCCCCHHHHHHHHHHHHHh-CCCEEEEcC
Confidence 4566778 8998875444455777777888887765 489888753
No 229
>KOG2371|consensus
Probab=25.22 E-value=48 Score=33.65 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=37.6
Q ss_pred cccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccC
Q psy7342 229 EDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGM 272 (338)
Q Consensus 229 ~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~ 272 (338)
+ +++.+...+++.|+...|++.+.++..+ ..+++.||++++.
T Consensus 6 q-~~~kvLp~~~~rd~~~~lek~~~e~~s~-~~~~i~ts~~v~~ 47 (411)
T KOG2371|consen 6 Q-SPSKVLPPATARDVFQKLEKLCKEAPSR-IVTVIQTSLKVGR 47 (411)
T ss_pred c-CCCCCCChhhhhhhhhHHHHHHHhhccc-ceeeEecccccch
Confidence 5 7788888889999999999999999887 4899999999995
No 230
>PF06897 DUF1269: Protein of unknown function (DUF1269); InterPro: IPR009200 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain two or more transmembrane segments.
Probab=25.19 E-value=75 Score=26.20 Aligned_cols=39 Identities=10% Similarity=0.243 Sum_probs=33.0
Q ss_pred eecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHH
Q psy7342 215 SEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKY 254 (338)
Q Consensus 215 i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~ 254 (338)
+.+....-+...+++ +|.++.+...-+++.+.|++++.+
T Consensus 63 v~~~~~d~v~~~l~~-~gg~v~~t~ls~~~e~~L~~al~~ 101 (102)
T PF06897_consen 63 VDEATEDKVDAALRK-FGGKVLRTSLSEEDEDELQEALDE 101 (102)
T ss_pred eccCCHHHHHHHHHh-cCCEEEeccCCHHHHHHHHHHHhc
Confidence 455677788889999 999999999989999999988865
No 231
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=25.06 E-value=2.2e+02 Score=26.95 Aligned_cols=65 Identities=11% Similarity=-0.020 Sum_probs=44.2
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
.+|+++.-.+. .|+ .....+.+.+++ .|++++....++-+.......+.++.+. ++|+|+.++-.
T Consensus 133 ~~v~i~~~~~~--~g~---~~~~~~~~~~~~-~G~~v~~~~~~~~~~~d~~~~v~~l~~~-~pd~v~~~~~~ 197 (333)
T cd06358 133 RRWYLIGNDYV--WPR---GSLAAAKRYIAE-LGGEVVGEEYVPLGTTDFTSVLERIAAS-GADAVLSTLVG 197 (333)
T ss_pred CeEEEEeccch--hhH---HHHHHHHHHHHH-cCCEEeeeeeecCChHHHHHHHHHHHHc-CCCEEEEeCCC
Confidence 45666643332 121 234577788999 9999988777776666777777776665 58999987644
No 232
>PRK13057 putative lipid kinase; Reviewed
Probab=24.94 E-value=2.1e+02 Score=27.12 Aligned_cols=58 Identities=17% Similarity=0.311 Sum_probs=35.6
Q ss_pred cHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhcc
Q psy7342 219 SGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLI 286 (338)
Q Consensus 219 N~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l~ 286 (338)
....+...|++ .|+++.... ........+..++... ++|.||..||=|. +.+++..+.
T Consensus 14 ~~~~i~~~l~~-~g~~~~~~~--t~~~~~a~~~~~~~~~--~~d~iiv~GGDGT-----v~~v~~~l~ 71 (287)
T PRK13057 14 ALAAARAALEA-AGLELVEPP--AEDPDDLSEVIEAYAD--GVDLVIVGGGDGT-----LNAAAPALV 71 (287)
T ss_pred hHHHHHHHHHH-cCCeEEEEe--cCCHHHHHHHHHHHHc--CCCEEEEECchHH-----HHHHHHHHh
Confidence 35577888998 898755433 3334444444444322 3899999999663 445555544
No 233
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=24.80 E-value=2.3e+02 Score=24.95 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=33.6
Q ss_pred HHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc-CCCCCChHHHHHhccccccC
Q psy7342 221 PLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG-MSPRDVTPEAMNHLIDKKVP 291 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts-~G~~D~t~eal~~l~~~~lp 291 (338)
+.+..+|++ .|+.+.... .|.. +.+ +. .. .+|.||.+||-+ +.......+.++...+...|
T Consensus 10 ~~~~~~l~~-~G~~~~~~~---~~~~-~~~-~~--~~--~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~P 71 (178)
T cd01744 10 HNILRELLK-RGCEVTVVP---YNTD-AEE-IL--KL--DPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIP 71 (178)
T ss_pred HHHHHHHHH-CCCeEEEEE---CCCC-HHH-Hh--hc--CCCEEEECCCCCChhHhHHHHHHHHHHHhCCCC
Confidence 457889999 998776443 3221 111 21 12 389999999964 22223334445555444333
No 234
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=24.78 E-value=2.2e+02 Score=27.04 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=42.7
Q ss_pred ecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCC
Q psy7342 196 VRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPR 275 (338)
Q Consensus 196 ~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~ 275 (338)
.+.|||+++..+=|.... +++...+..++++ +.+.+++.+++..+. ++|+|++.||+ .
T Consensus 84 i~n~kIlll~~~Le~~~~---~~~~~~~~~~~~~--------------E~~~l~~~v~kI~~~-g~nvIl~~k~I----~ 141 (261)
T cd03334 84 IKNPRILLLQGPLEYQRV---ENKLLSLDPVILQ--------------EKEYLKNLVSRIVAL-RPDVILVEKSV----S 141 (261)
T ss_pred cCCCcEEEEeeeeccccc---cCCHHHHHHHHHH--------------HHHHHHHHHHHHHhc-CCCEEEECCcc----C
Confidence 367899999887664332 2343444444433 455677777777665 69999999988 4
Q ss_pred CChHHHHHh
Q psy7342 276 DVTPEAMNH 284 (338)
Q Consensus 276 D~t~eal~~ 284 (338)
|+..+-+.+
T Consensus 142 ~~a~~~l~k 150 (261)
T cd03334 142 RIAQDLLLE 150 (261)
T ss_pred HHHHHHHHH
Confidence 454444444
No 235
>PRK13846 putative glycerol-3-phosphate acyltransferase PlsX; Provisional
Probab=24.66 E-value=98 Score=30.74 Aligned_cols=84 Identities=12% Similarity=0.066 Sum_probs=45.3
Q ss_pred cccCCCcee--ChhcHHHHHhhCC---CceeEeecCceEEEEecCCCccCCeeecCcHHHHHHHHHccc-CCEEEEEEEc
Q psy7342 168 QQYSTTQVI--RPDTNHAQRCSTS---MKYWELVRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDF-QHAHILKTCV 241 (338)
Q Consensus 168 ~ll~~G~~l--~p~~i~~lLas~G---i~~v~V~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~-G~~v~~~~iV 241 (338)
+++..|--+ +|.++ -..|-.| .+.+.=...|||+++.+|.|-..|. ....--..+|++ . .++ +.+-+
T Consensus 141 ~lLD~GAN~d~~pe~L-~qFA~mGs~ya~~~~gi~~PrVgLLNiG~E~~KG~---~~~kea~~LL~~-~~~in--F~Gnv 213 (316)
T PRK13846 141 VILDVGANVSVNPEEM-VGFARMGLAYRQCLGSNQPPTLGLLNIGSEERKGT---EAHRQTFRMLRE-TFGSA--FLGNI 213 (316)
T ss_pred EEEECCccCCCCHHHH-HHHHHHHHHHHHHhcCCCCCeEeEEECccccccCC---HHHHHHHHHHhc-CCCCC--cEeee
Confidence 344444433 55555 4444444 3333224689999999999977663 222223345554 3 333 33333
Q ss_pred CCCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 242 PDEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 242 ~Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
.- ++.+. +.+|+|||=|
T Consensus 214 Eg---------~di~~-G~~DVvV~DG 230 (316)
T PRK13846 214 ES---------GDVFS-GKVDIVVTDG 230 (316)
T ss_pred cc---------ccccC-CCCCEEEeCC
Confidence 21 11222 3589999988
No 236
>COG1731 Archaeal riboflavin synthase [Coenzyme metabolism]
Probab=24.64 E-value=3.2e+02 Score=24.07 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=39.5
Q ss_pred cCcHHHHHHHHHcccCCEEEEEEE--cCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhc
Q psy7342 217 DKSGPLLAQLLQEDFQHAHILKTC--VPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHL 285 (338)
Q Consensus 217 DsN~~~L~~lL~~~~G~~v~~~~i--V~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l 285 (338)
|-.+..+..+-+..-|+.+.++.+ +.|=+-+-+ +++++.+||+||+-|=.|..+.|-..--...+
T Consensus 15 dMg~vai~~lk~~~~~~~i~R~TVPGIKdlpvaak----rLieeeGCd~Vi~lG~~G~t~~Dk~~~~~aS~ 81 (154)
T COG1731 15 DMGSVAIDELKKLLPGIKIKRYTVPGIKDLPVAAK----RLIEEEGCDIVIALGWVGPTEKDKYSYLAASI 81 (154)
T ss_pred cchHHHHHHHHhhCCCCceEEeeCCCcccChHHHH----HHHHhcCCcEEEEccCcCcchhhHHHHHHHhh
Confidence 333444444433324567666644 345444444 44444579999999999999999765544443
No 237
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=24.63 E-value=1.9e+02 Score=26.02 Aligned_cols=47 Identities=15% Similarity=0.094 Sum_probs=33.8
Q ss_pred HHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 221 PLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
..+...+++ .|+++.... ...|++...+.++.++.+ ++|-||...+.
T Consensus 19 ~gi~~~~~~-~g~~~~~~~-~~~~~~~~~~~l~~~~~~-~vdgii~~~~~ 65 (273)
T cd06305 19 AGTKAEAEA-LGGDLRVYD-AGGDDAKQADQIDQAIAQ-KVDAIIIQHGR 65 (273)
T ss_pred HHHHHHHHH-cCCEEEEEC-CCCCHHHHHHHHHHHHHc-CCCEEEEecCC
Confidence 345567888 898876653 356777778888888776 58988887654
No 238
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=24.56 E-value=1.1e+02 Score=26.77 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=42.8
Q ss_pred EEecCCCccCCeeecCc----HHHHHHHHHc--ccCCEEEEEEEcCCCHHHHHHHHHHHH---hCCCCcEEEEeCCc
Q psy7342 203 LALVSDRCFNKESEDKS----GPLLAQLLQE--DFQHAHILKTCVPDEMEEIKDKLKYWV---DQSKVDLIFTSGGT 270 (338)
Q Consensus 203 IIstGdEl~~G~i~DsN----~~~L~~lL~~--~~G~~v~~~~iV~Dd~e~I~~aL~~a~---~~~~~DlVITTGGt 270 (338)
|+..||.+..|.-.+.. ...+..++.+ ..++.+...++-.+.-..+.+.+++.. ....+|+|+...|+
T Consensus 2 i~~~GDSit~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~~G~t~~~~~~r~~~~~~~~~~~~~d~V~i~~G~ 78 (204)
T cd04506 2 IVALGDSLTEGVGDETGKGGYVGRLDKLIETKTVKKVTVQNFGVSGDRSDQLLKRLKTKKVQKELKKADVITITIGG 78 (204)
T ss_pred EeEEeccccCccCCCCCCCChHHHHHHHHhhhcCCceEEEeecccchhHHHHHHHHhcchhhhhcccCCEEEEEecc
Confidence 57789999877433221 3344444411 146788999999988777777655422 11248999888765
No 239
>PRK05665 amidotransferase; Provisional
Probab=24.46 E-value=1.4e+02 Score=28.08 Aligned_cols=62 Identities=10% Similarity=0.040 Sum_probs=37.7
Q ss_pred ceEEEEecCCCccC-CeeecCcHHHHHHHHHcccCC--EEEEEEEcCCC-HHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 199 TCHLLALVSDRCFN-KESEDKSGPLLAQLLQEDFQH--AHILKTCVPDE-MEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 199 prVaIIstGdEl~~-G~i~DsN~~~L~~lL~~~~G~--~v~~~~iV~Dd-~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
++++|+.+|+..-. -..+..-+.++..+|.+ .+. ++..+.+..++ +. ..++ +|.||.|||-.
T Consensus 3 mki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~-~~~~~~~~~~~~~~~~~p~--------~~~~--~dgiiitGs~~ 68 (240)
T PRK05665 3 LRICILETDVLRPELVAQYQGYGRMFEQLFAR-QPIAAEFVVYNVVQGDYPA--------DDEK--FDAYLVTGSKA 68 (240)
T ss_pred eEEEEEECCCCCHHHHHHhCCHHHHHHHHHHh-CCCCceEEEEeccCCCCCC--------Cccc--CCEEEECCCCC
Confidence 46899999865310 11234556788899888 774 34444444333 11 1223 89999999943
No 240
>PLN02347 GMP synthetase
Probab=24.30 E-value=2.6e+02 Score=29.75 Aligned_cols=53 Identities=13% Similarity=0.203 Sum_probs=36.4
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCC--HHHHHHHHHHHHhCCCCcEEEEeCCccC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDE--MEEIKDKLKYWVDQSKVDLIFTSGGTGM 272 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd--~e~I~~aL~~a~~~~~~DlVITTGGts~ 272 (338)
-+|.||-.|+ ++...|...+++ +|+.+. ++|.+ .+.|. + ..+|-||.+||-+.
T Consensus 11 ~~IlIID~G~---------~~t~~I~r~lre-lgv~~~---v~p~~~~~~~i~----~----~~~dgIILsGGP~s 65 (536)
T PLN02347 11 DVVLILDYGS---------QYTHLITRRVRE-LGVYSL---LLSGTASLDRIA----S----LNPRVVILSGGPHS 65 (536)
T ss_pred CEEEEEECCC---------cHHHHHHHHHHH-CCCeEE---EEECCCCHHHHh----c----CCCCEEEECCCCCc
Confidence 3677887775 688999999999 998544 44433 33332 2 13899999998643
No 241
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.23 E-value=1.8e+02 Score=27.38 Aligned_cols=51 Identities=24% Similarity=0.363 Sum_probs=40.0
Q ss_pred cCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 217 DKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 217 DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
-..|..++.+++. +|+.+++-..-..-..++.+.+..+ .+ ++|++||--|-
T Consensus 77 s~DGEliA~~l~k-fG~~~IRGSs~Kgg~~Alr~l~k~L-k~-G~~i~itpDgP 127 (214)
T COG2121 77 SRDGELIARLLEK-FGLRVIRGSSNKGGISALRALLKAL-KQ-GKSIAITPDGP 127 (214)
T ss_pred CcCHHHHHHHHHH-cCceEEeccCCcchHHHHHHHHHHH-hC-CCcEEEcCCCC
Confidence 3568999999999 9999988887666677777777655 44 48999998764
No 242
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=24.22 E-value=2.7e+02 Score=24.67 Aligned_cols=58 Identities=12% Similarity=0.025 Sum_probs=45.1
Q ss_pred HHHhhCCCceeEeec-------------------CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEc
Q psy7342 183 AQRCSTSMKYWELVR-------------------STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCV 241 (338)
Q Consensus 183 ~lLas~Gi~~v~V~~-------------------~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV 241 (338)
.+|++.|++.+-+.+ +.++..+.+|++-..|.-...|...|..+.++ +|+++.....+
T Consensus 63 ~~l~~l~vd~v~~~~f~~~~~~~s~~~Fi~~il~~~~~~~ivvG~Df~FG~~~~g~~~~L~~~~~~-~g~~v~~v~~~ 139 (180)
T cd02064 63 ELLESLGVDYLLVLPFDKEFASLSAEEFVEDLLVKLNAKHVVVGFDFRFGKGRSGDAELLKELGKK-YGFEVTVVPPV 139 (180)
T ss_pred HHHHHcCCCEEEEeCCCHHHHcCCHHHHHHHHHhhcCCeEEEEccCCCCCCCCCCCHHHHHHhhhh-cCcEEEEeCcE
Confidence 778888888776532 11467899999988888778888899999999 99988766654
No 243
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=24.09 E-value=2e+02 Score=25.76 Aligned_cols=54 Identities=11% Similarity=0.096 Sum_probs=32.0
Q ss_pred eEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccC
Q psy7342 200 CHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGM 272 (338)
Q Consensus 200 rVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~ 272 (338)
||+|++.= | ..+.-..++..+|++ .|.++....+ ++++. +.+ +|.||.+||-+.
T Consensus 2 ~i~vl~~~-----~-~~~e~~~~~~~~l~~-~g~~~~~~~~--~~~~~--------l~~--~d~iii~GG~~~ 55 (200)
T PRK13527 2 KIGVLALQ-----G-DVEEHIDALKRALDE-LGIDGEVVEV--RRPGD--------LPD--CDALIIPGGEST 55 (200)
T ss_pred EEEEEEEC-----C-ccHHHHHHHHHHHHh-cCCCeEEEEe--CChHH--------hcc--CCEEEECCCcHH
Confidence 56666532 2 123344577788888 9976554433 22221 233 899999998543
No 244
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=24.07 E-value=1.8e+02 Score=28.41 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=35.9
Q ss_pred cHHHHHHHHHcccCCEEEEEEEcCC-CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 219 SGPLLAQLLQEDFQHAHILKTCVPD-EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 219 N~~~L~~lL~~~~G~~v~~~~iV~D-d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
-...+.+.|++ .| .+..+ +.++ +.+.+.+.++.+.+. ++|+||-.||-++.+
T Consensus 40 ~~~~v~~~l~~-~~-~~~~~-~~~~~~~~~v~~~~~~~~~~-~~d~iIaiGGGs~~D 92 (339)
T cd08173 40 AGKKVEALLED-EG-EVDVV-IVEDATYEEVEKVESSARDI-GADFVIGVGGGRVID 92 (339)
T ss_pred HHHHHHHHHHh-cC-CeEEE-EeCCCCHHHHHHHHHHhhhc-CCCEEEEeCCchHHH
Confidence 34566778888 77 65444 4555 566677776666554 599999999987665
No 245
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=24.00 E-value=1.5e+02 Score=28.71 Aligned_cols=41 Identities=20% Similarity=0.172 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHhCCCCcEEEEe---CCccCCCCCChHHHHHh
Q psy7342 244 EMEEIKDKLKYWVDQSKVDLIFTS---GGTGMSPRDVTPEAMNH 284 (338)
Q Consensus 244 d~e~I~~aL~~a~~~~~~DlVITT---GGts~G~~D~t~eal~~ 284 (338)
+.+++.+.|.+.+.+.++|+|||- ||.+..+.-.+.++...
T Consensus 105 ~~~~~~~~L~~iIr~~~PdvVvT~d~~GgygHpDH~~v~~a~~~ 148 (283)
T TIGR03446 105 PLEEAAEPLVRVIREFRPHVITTYDENGGYPHPDHIMCHEVSVE 148 (283)
T ss_pred CHHHHHHHHHHHHHHcCCEEEEecCCCCCCCChhHHHHHHHHHH
Confidence 456778888888887779999995 55544444444444443
No 246
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=23.96 E-value=1.3e+02 Score=27.62 Aligned_cols=75 Identities=23% Similarity=0.209 Sum_probs=42.9
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCC-
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDV- 277 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~- 277 (338)
.++.|+-.|.+ ....+..++++ .|+ ++..+++.+.+.-. +. ....|.||.+||-.--..|-
T Consensus 2 ~~ilIld~g~q---------~~~li~r~~re-~g~--v~~e~~~~~~~~~~--~~----~~~~~giIlsGgp~sv~~~~~ 63 (198)
T COG0518 2 RKILILDFGGQ---------YLGLIARRLRE-LGY--VYSEIVPYTGDAEE--LP----LDSPDGIIISGGPMSVYDEDP 63 (198)
T ss_pred cEEEEEeCCCc---------HhHHHHHHHHH-cCC--ceEEEEeCCCCccc--cc----ccCCCEEEEcCCCCCCccccc
Confidence 35667777764 45788899998 886 33334444322211 11 11259999999983322333
Q ss_pred -hHHHHHhccccccC
Q psy7342 278 -TPEAMNHLIDKKVP 291 (338)
Q Consensus 278 -t~eal~~l~~~~lp 291 (338)
.+....-+.+...|
T Consensus 64 w~~~~~~~i~~~~~p 78 (198)
T COG0518 64 WLPREKDLIKDAGVP 78 (198)
T ss_pred cchhHHHHHHHhCCC
Confidence 56665555555555
No 247
>COG1992 Uncharacterized conserved protein [Function unknown]
Probab=23.91 E-value=1.4e+02 Score=27.32 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=37.6
Q ss_pred HHHHHHHHcccCCEEEEEEE--cCCCHHHHHH--HHHHHHhCCC--CcEEEEeCCccCCC
Q psy7342 221 PLLAQLLQEDFQHAHILKTC--VPDEMEEIKD--KLKYWVDQSK--VDLIFTSGGTGMSP 274 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~i--V~Dd~e~I~~--aL~~a~~~~~--~DlVITTGGts~G~ 274 (338)
.-+...++. .|+.+..+.- -|.+.+.... .++.++.+.+ +|+|+=.||.|.-+
T Consensus 99 ~~~v~~~~~-~G~~v~~~dR~~Ep~~v~~~e~~w~i~~a~~~~~~~PDVIyd~G~~GkEp 157 (181)
T COG1992 99 EEVVEALKD-LGLAVSSFDRSKEPEEVEEKEGGWGIESAFRELGGAPDVIYDLGGVGKEP 157 (181)
T ss_pred HHHHHHHHh-cCceEEEeCcccCchhhhccccchHHHHHHHhcCCCCCEEEeCCCCCccc
Confidence 346788999 9999988887 5555444444 2455554443 89999999999866
No 248
>PRK03971 putative deoxyhypusine synthase; Provisional
Probab=23.89 E-value=64 Score=32.24 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 245 MEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 245 ~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
...+++.|..++++.-.|+||||||.
T Consensus 79 saGlr~~i~~Li~~~~Vd~iVtTgan 104 (334)
T PRK03971 79 SSGLREIIAYLVKEKKVDVIVTTAGG 104 (334)
T ss_pred chhHHHHHHHHHHcCCeeEEEeCCCc
Confidence 55788999999988779999999986
No 249
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.75 E-value=3.1e+02 Score=24.77 Aligned_cols=47 Identities=6% Similarity=-0.027 Sum_probs=33.3
Q ss_pred HHHHHHHHHcccCCEEEEEEEcCC-CHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 220 GPLLAQLLQEDFQHAHILKTCVPD-EMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 220 ~~~L~~lL~~~~G~~v~~~~iV~D-d~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
...+...+++ .|+++..... .+ |.+...+.++.++.+ ++|.||.++.
T Consensus 19 ~~g~~~~~~~-~g~~v~~~~~-~~~~~~~~~~~i~~l~~~-~vdgiii~~~ 66 (271)
T cd06312 19 KNGAEDAAKD-LGVDVEYRGP-ETFDVADMARLIEAAIAA-KPDGIVVTIP 66 (271)
T ss_pred HHHHHHHHHH-hCCEEEEECC-CCCCHHHHHHHHHHHHHh-CCCEEEEeCC
Confidence 3455667778 8888765433 34 677788888887776 5998888764
No 250
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=23.74 E-value=3.1e+02 Score=24.58 Aligned_cols=45 Identities=9% Similarity=0.036 Sum_probs=28.6
Q ss_pred HHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 224 AQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 224 ~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
...+++..|+.+.... -..|++...+.++.+++. ++|-+|..+..
T Consensus 22 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~l~~~-~vdgiii~~~~ 66 (272)
T cd06301 22 KEHAKVLGGVELQFED-AKNDVATQLSQVENFIAQ-GVDAIIVVPVD 66 (272)
T ss_pred HHHHHHcCCcEEEEeC-CCCCHHHHHHHHHHHHHc-CCCEEEEecCc
Confidence 3334431466665543 256777788888887775 58988887644
No 251
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=23.55 E-value=1.4e+02 Score=30.26 Aligned_cols=52 Identities=12% Similarity=0.106 Sum_probs=33.6
Q ss_pred HHHHHHHHcccCCEE-EEEEEcCCCHH-HHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 221 PLLAQLLQEDFQHAH-ILKTCVPDEME-EIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v-~~~~iV~Dd~e-~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
.-+.+.|++ .|.++ ++-.+.||=.. .+.+.++.+ ++.++|.||--||-|.=+
T Consensus 47 ~~v~~~L~~-~~i~~~if~~v~p~P~~~~v~~~~~~~-~~~~~D~iIalGGGS~~D 100 (377)
T COG1454 47 DKVLDSLDA-AGIEYEVFDEVEPEPTIETVEAGAEVA-REFGPDTIIALGGGSVID 100 (377)
T ss_pred HHHHHHHHh-cCCeEEEecCCCCCCCHHHHHHHHHHH-HhcCCCEEEEeCCccHHH
Confidence 456677888 88665 44455555443 455555544 445799999999887643
No 252
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=23.34 E-value=83 Score=32.32 Aligned_cols=67 Identities=13% Similarity=0.055 Sum_probs=40.5
Q ss_pred ecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCC
Q psy7342 196 VRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPR 275 (338)
Q Consensus 196 ~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~ 275 (338)
+++.+|+||+|-+= +=..-.-|..+.+- +|..+ .+-+++.++.+++..+-+ ||+|+. -=+|.+.+
T Consensus 231 ~~~~kVaiITtDtY------RIGA~EQLk~Ya~i-m~vp~----~vv~~~~el~~ai~~l~~---~d~ILV-DTaGrs~~ 295 (407)
T COG1419 231 KKKKKVAIITTDTY------RIGAVEQLKTYADI-MGVPL----EVVYSPKELAEAIEALRD---CDVILV-DTAGRSQY 295 (407)
T ss_pred ccCcceEEEEeccc------hhhHHHHHHHHHHH-hCCce----EEecCHHHHHHHHHHhhc---CCEEEE-eCCCCCcc
Confidence 67899999997541 01112233333333 45543 467889999999987643 698873 12345566
Q ss_pred CC
Q psy7342 276 DV 277 (338)
Q Consensus 276 D~ 277 (338)
|.
T Consensus 296 D~ 297 (407)
T COG1419 296 DK 297 (407)
T ss_pred CH
Confidence 64
No 253
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=23.20 E-value=2.8e+02 Score=27.24 Aligned_cols=63 Identities=14% Similarity=0.179 Sum_probs=40.4
Q ss_pred CCee--ecCcHHHHHHHHHcc--cCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc--CCCCCC
Q psy7342 212 NKES--EDKSGPLLAQLLQED--FQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG--MSPRDV 277 (338)
Q Consensus 212 ~G~i--~DsN~~~L~~lL~~~--~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts--~G~~D~ 277 (338)
+|++ .|....+|...|+-+ +|..+..+-+- +.+.-+.|.+++.+..+|++|.||==| .+..|+
T Consensus 105 PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~---E~eqp~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~ 173 (287)
T PF05582_consen 105 PGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVP---EKEQPEKIYRLLEEYRPDILVITGHDGYLKNKKDY 173 (287)
T ss_pred CCeEEEecCCHHHHHHHHHHHHHcCCceEEEEec---hHHhhHHHHHHHHHcCCCEEEEeCchhhhcCCCCh
Confidence 6776 588888888766542 66666655442 233444555555556699999999555 455564
No 254
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=23.13 E-value=1.8e+02 Score=28.81 Aligned_cols=53 Identities=13% Similarity=-0.018 Sum_probs=36.9
Q ss_pred HHHHHHHHHcccCCEEEEEEEc-CC-CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 220 GPLLAQLLQEDFQHAHILKTCV-PD-EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 220 ~~~L~~lL~~~~G~~v~~~~iV-~D-d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
...+...|++ .|.++..+.-+ ++ +.+.+.+.++.+.+. ++|.||-.||-|+-+
T Consensus 43 ~~~v~~~L~~-~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~-~~D~IIaiGGGs~iD 97 (376)
T cd08193 43 IDPLLASLEA-AGIEVTVFDDVEADPPEAVVEAAVEAARAA-GADGVIGFGGGSSMD 97 (376)
T ss_pred HHHHHHHHHH-cCCeEEEECCCCCCcCHHHHHHHHHHHHhc-CCCEEEEeCCchHHH
Confidence 3557778888 88877655433 33 355677776666554 699999999988765
No 255
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=23.13 E-value=81 Score=31.24 Aligned_cols=60 Identities=7% Similarity=0.165 Sum_probs=38.0
Q ss_pred HHHHHHHHcccCCEEEEEEEcCCC-HHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhccccc
Q psy7342 221 PLLAQLLQEDFQHAHILKTCVPDE-MEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLIDKK 289 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~iV~Dd-~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l~~~~ 289 (338)
..+.++++. -+ .+..+....= +.-+++.|..++++.-.|+||||||. +..+.++.++.+.
T Consensus 45 ~i~~~ml~d-~~--~ifL~~tg~mvs~Glr~ii~~Li~~~~VD~iVtTgan------i~hD~~~~lg~~~ 105 (312)
T PRK01221 45 EILKEMISD-AD--LRFLSFTANLVSTGLRGLIADLIKRGLFNVVITTCGT------LDHDIARSFGGVY 105 (312)
T ss_pred HHHHHHHcC-CC--eEEEEecchhHHHHHHHHHHHHHHcCCeeEEEeCCCc------hHHHHHHHcCCCe
Confidence 344455544 22 4455544443 56689999999988779999999986 3444455554433
No 256
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=23.00 E-value=3.2e+02 Score=25.92 Aligned_cols=84 Identities=12% Similarity=0.096 Sum_probs=48.4
Q ss_pred eEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChH
Q psy7342 200 CHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTP 279 (338)
Q Consensus 200 rVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~ 279 (338)
||+||.=|.. .+.++-=.++..+.+.|++ .|+++....+-.| +...+.+ +. .+|+|+..-.-..|.+..++
T Consensus 2 ~v~v~~gg~s-~e~~~sl~s~~~i~~al~~-~g~~~~~i~~~~~----~~~~~~~-~~--~~D~v~~~~~g~~ge~~~~~ 72 (299)
T PRK14571 2 RVALLMGGVS-REREISLRSGERVKKALEK-LGYEVTVFDVDED----FLKKVDQ-LK--SFDVVFNVLHGTFGEDGTLQ 72 (299)
T ss_pred eEEEEeCCCC-CCccchHHHHHHHHHHHHH-cCCeEEEEccCch----HHHHhhh-cc--CCCEEEEeCCCCCCCccHHH
Confidence 6788876643 2334444577888899999 9999887764322 2222222 22 37999866443355555555
Q ss_pred HHHHhccccccCCh
Q psy7342 280 EAMNHLIDKKVPCI 293 (338)
Q Consensus 280 eal~~l~~~~lpG~ 293 (338)
..++.+ .....|-
T Consensus 73 ~~le~~-gip~~G~ 85 (299)
T PRK14571 73 AILDFL-GIRYTGS 85 (299)
T ss_pred HHHHHc-CCCccCC
Confidence 554443 3444343
No 257
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=22.87 E-value=2.9e+02 Score=25.44 Aligned_cols=53 Identities=15% Similarity=0.089 Sum_probs=32.9
Q ss_pred ceEEEEecCCCccCCeeecCcHHH-HHHHHH-cccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPL-LAQLLQ-EDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~-L~~lL~-~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
+||+||... | +|... +...++ . .|+++..... ++. -+++ +|+||..||.+.++
T Consensus 1 ~~v~Vl~~~-----G----~n~~~d~~~a~~~~-~G~~~~~v~~--~~~---------~l~~--~D~lvipGG~~~~d 55 (219)
T PRK03619 1 MKVAVIVFP-----G----SNCDRDMARALRDL-LGAEPEYVWH--KET---------DLDG--VDAVVLPGGFSYGD 55 (219)
T ss_pred CEEEEEecC-----C----cChHHHHHHHHHhc-CCCeEEEEec--CcC---------CCCC--CCEEEECCCCchhh
Confidence 367777743 3 45433 566777 7 8988765433 221 1334 89999999977553
No 258
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=22.87 E-value=1.6e+02 Score=29.33 Aligned_cols=54 Identities=20% Similarity=0.034 Sum_probs=35.5
Q ss_pred cHHHHHHHHHcccCCEEEEEEEcC-CC-HHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 219 SGPLLAQLLQEDFQHAHILKTCVP-DE-MEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 219 N~~~L~~lL~~~~G~~v~~~~iV~-Dd-~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
-...+...|++ .|+++..+.-+. +. .+.+.+.++.+.+ .++|.||-.||-|+-+
T Consensus 38 ~~~~v~~~L~~-~~~~~~~f~~v~~~~~~~~v~~~~~~~~~-~~~D~IIaiGGGS~iD 93 (386)
T cd08191 38 VFAELVQALAA-AGVEVEVFDGVLPDLPRSELCDAASAAAR-AGPDVIIGLGGGSCID 93 (386)
T ss_pred hHHHHHHHHHH-cCCeEEEECCCCCCcCHHHHHHHHHHHHh-cCCCEEEEeCCchHHH
Confidence 34557778888 888876555443 32 3445566555544 4699999999987654
No 259
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=22.80 E-value=4.1e+02 Score=22.02 Aligned_cols=63 Identities=13% Similarity=0.031 Sum_probs=37.6
Q ss_pred cCceEEEEecCCCccCCeeecCcHH--HHHHHHHcccCCEEEEEEEcC-CCHHHHHHHHHHHHhCCCCcEEEE
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGP--LLAQLLQEDFQHAHILKTCVP-DEMEEIKDKLKYWVDQSKVDLIFT 266 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~--~L~~lL~~~~G~~v~~~~iV~-Dd~e~I~~aL~~a~~~~~~DlVIT 266 (338)
.+|+.++|.+|+. .+|..| ......++ .|+.+..+..-. .+.+++.+.|+++-++...|=|+.
T Consensus 28 ~~P~Laii~vg~d------~~S~~Y~~~k~k~~~~-~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~V~GIlv 93 (117)
T PF00763_consen 28 ITPKLAIILVGDD------PASISYVRSKQKAAEK-LGIEFELIELPEDISEEELLELIEKLNEDPSVHGILV 93 (117)
T ss_dssp ---EEEEEEES--------HHHHHHHHHHHHHHHH-HT-EEEEEEE-TTSSHHHHHHHHHHHHH-TT-SEEEE
T ss_pred CCcEEEEEecCCC------hhHHHHHHHHHHHHHH-cCCceEEEECCCCcCHHHHHHHHHHHhCCCCCCEEEE
Confidence 4599999999986 223322 34466777 999988776633 347889999998876655565554
No 260
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=22.68 E-value=1.8e+02 Score=28.67 Aligned_cols=53 Identities=19% Similarity=0.155 Sum_probs=36.6
Q ss_pred HHHHHHHHHcccCCEEEEEEEcCC--CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 220 GPLLAQLLQEDFQHAHILKTCVPD--EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 220 ~~~L~~lL~~~~G~~v~~~~iV~D--d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
...+...|++ .|+++..+.-+.. +.+.+.+.++.+-+. ++|.||-.||-|+-+
T Consensus 41 ~~~v~~~L~~-~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~-~~d~IIaiGGGSviD 95 (370)
T cd08192 41 VARVLALLED-AGLAAALFDEVPPNPTEAAVEAGLAAYRAG-GCDGVIAFGGGSALD 95 (370)
T ss_pred HHHHHHHHHH-cCCeEEEeCCCCCCCCHHHHHHHHHHHHhc-CCCEEEEeCCchHHH
Confidence 4567888888 8988765543332 345677776665544 699999999976654
No 261
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=22.67 E-value=3.7e+02 Score=24.18 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=31.5
Q ss_pred HHHHHHHHccc---CCEE-EEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 221 PLLAQLLQEDF---QHAH-ILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 221 ~~L~~lL~~~~---G~~v-~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
..+...+++ + |..+ ....-..+|.+...+.+++++.+ ++|-||..+.
T Consensus 19 ~~i~~~~~~-~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~-~vdgiIi~~~ 69 (272)
T cd06300 19 DEFKAQAKE-LKKAGLISEFIVTSADGDVAQQIADIRNLIAQ-GVDAIIINPA 69 (272)
T ss_pred HHHHHHHHh-hhccCCeeEEEEecCCCCHHHHHHHHHHHHHc-CCCEEEEeCC
Confidence 344556677 7 7743 22223455778888888888876 6999999774
No 262
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=22.57 E-value=1.5e+02 Score=27.26 Aligned_cols=67 Identities=19% Similarity=0.172 Sum_probs=41.7
Q ss_pred CcHHHHHHHHHcccCCEEE-----EEEEcCCC-------HHHHHHHHHHHHhCCCCcEEEEeCCccCC-----------C
Q psy7342 218 KSGPLLAQLLQEDFQHAHI-----LKTCVPDE-------MEEIKDKLKYWVDQSKVDLIFTSGGTGMS-----------P 274 (338)
Q Consensus 218 sN~~~L~~lL~~~~G~~v~-----~~~iV~Dd-------~e~I~~aL~~a~~~~~~DlVITTGGts~G-----------~ 274 (338)
-|..++...|++ .|..+. ......++ .+...+.|++++++. -.+.|++|..+.. .
T Consensus 60 ~~~~l~~~~l~~-~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vpVv~g~i~~~~~g~~~~l~rg~ 137 (227)
T cd04234 60 LSARLLAAALRD-RGIKARSLDARQAGITTDDNHGAARIIEISYERLKELLAEI-GKVPVVTGFIGRNEDGEITTLGRGG 137 (227)
T ss_pred HHHHHHHHHHHH-CCCCeEEeCHHHCCEEcCCccchhhHHHHHHHHHHHHHhhC-CCEEEecCceecCCCCCEEEeeCCC
Confidence 356667888999 998876 33344333 345567777777651 2678887766554 3
Q ss_pred CCChHHHHHhcc
Q psy7342 275 RDVTPEAMNHLI 286 (338)
Q Consensus 275 ~D~t~eal~~l~ 286 (338)
.|.+...+...+
T Consensus 138 sD~~A~~lA~~l 149 (227)
T cd04234 138 SDYSAAALAAAL 149 (227)
T ss_pred cHHHHHHHHHHh
Confidence 466666665543
No 263
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=22.54 E-value=2.1e+02 Score=27.94 Aligned_cols=55 Identities=18% Similarity=0.201 Sum_probs=37.3
Q ss_pred cCcHHHHHHHHHcccCCEEEEEEEc-C---CCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 217 DKSGPLLAQLLQEDFQHAHILKTCV-P---DEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 217 DsN~~~L~~lL~~~~G~~v~~~~iV-~---Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
+..+..+...|++ .|+++..+..+ + .+.+.+.+.++.+.+ ++|+||-.||=|+.+
T Consensus 36 ~~~~~~v~~~l~~-~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~--~~d~IIaIGGGs~~D 94 (348)
T cd08175 36 AAAGKKVEALLKR-AGVVVLLIVLPAGDLIADEKAVGRVLKELER--DTDLIIAVGSGTIND 94 (348)
T ss_pred HHHHHHHHHHHHH-CCCeeEEeecCCCcccCCHHHHHHHHHHhhc--cCCEEEEECCcHHHH
Confidence 3345778889998 88876544433 3 345666666665544 489999999987665
No 264
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=22.48 E-value=2.3e+02 Score=29.75 Aligned_cols=67 Identities=9% Similarity=-0.004 Sum_probs=52.0
Q ss_pred CCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHh
Q psy7342 212 NKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNH 284 (338)
Q Consensus 212 ~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~ 284 (338)
-|-++|-+...-...... .|..+...-.-.++...+++-..- .+|+|+.+|||=-|.+++..+--+.
T Consensus 78 ~Glv~~~TaeAAk~AAlg-AGA~V~~~~a~~l~~~~l~~I~~~-----~PDIILLaGGtDGG~~e~~l~NA~~ 144 (463)
T TIGR01319 78 IGLVPEITAEAAKRAAHG-AGAKIANVYAYDLNNKDIEAIEES-----NLDIILFAGGTDGGEEECGIHNAKM 144 (463)
T ss_pred EeccchhhHHHHHHHHhc-CCcEEEEEEeecCCHHHHHHHhhc-----CCCEEEEeCCcCCCchHHHHHHHHH
Confidence 477889888888888888 999988877777777776655441 3899999999999999986553333
No 265
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=22.40 E-value=2.8e+02 Score=24.69 Aligned_cols=64 Identities=8% Similarity=0.046 Sum_probs=41.4
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
.+++++...++ .+ ......+...+++ .|+++......+.+.+.....+.++... +.|+|+..+.
T Consensus 136 ~~i~~v~~~~~--~~---~~~~~~~~~~~~~-~g~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~vi~~~~ 199 (298)
T cd06268 136 KKVAIIYDDYA--YG---RGLAAAFREALKK-LGGEVVAEETYPPGATDFSPLIAKLKAA-GPDAVFLAGY 199 (298)
T ss_pred CEEEEEEcCCc--hh---HHHHHHHHHHHHH-cCCEEEEEeccCCCCccHHHHHHHHHhc-CCCEEEEccc
Confidence 46777764443 22 2345667778888 9988877766665445566666666654 4799888764
No 266
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=22.30 E-value=1.6e+02 Score=26.27 Aligned_cols=67 Identities=10% Similarity=-0.016 Sum_probs=43.2
Q ss_pred EEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHH-HHhCCCCcEEEEeCCcc
Q psy7342 201 HLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKY-WVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 201 VaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~-a~~~~~~DlVITTGGts 271 (338)
..|+..||.+..|.-... .......+ .++.+...++-.|.-+.+...+.. .+....+|+|+...|+=
T Consensus 33 ~~iv~lGDSit~g~~~~~-~~~~~~~~---~~~~v~N~Gi~G~tt~~~l~r~~~~~l~~~~pd~VvI~~G~N 100 (214)
T cd01820 33 PDVVFIGDSITQNWEFTG-LEVWRELY---APLHALNFGIGGDRTQNVLWRLENGELDGVNPKVVVLLIGTN 100 (214)
T ss_pred CCEEEECchHhhhhcccc-hHHHHHHc---CcCCeEeeeeccccHhHHHHHHhcCCccCCCCCEEEEEeccc
Confidence 457788999987643322 22223332 356789999998888777766653 23333489888887764
No 267
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=22.14 E-value=2.6e+02 Score=26.51 Aligned_cols=65 Identities=9% Similarity=-0.007 Sum_probs=43.1
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
..+|+++...++- | ......+...+++ .|+++......+.+...+...+.++... ++|.|+..+.
T Consensus 144 ~~~va~l~~~~~~--g---~~~~~~~~~~~~~-~G~~vv~~~~~~~~~~d~~~~v~~l~~~-~~d~v~~~~~ 208 (344)
T cd06345 144 FKTAAIVAEDAAW--G---KGIDAGIKALLPE-AGLEVVSVERFSPDTTDFTPILQQIKAA-DPDVIIAGFS 208 (344)
T ss_pred CceEEEEecCchh--h---hHHHHHHHHHHHH-cCCeEEEEEecCCCCCchHHHHHHHHhc-CCCEEEEeec
Confidence 4577887765542 2 2345677888888 9999887666665545566666665554 5899988663
No 268
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=21.98 E-value=1.6e+02 Score=29.24 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=37.3
Q ss_pred HHHHHHHHHcccCCEEEEEE-EcCC-CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 220 GPLLAQLLQEDFQHAHILKT-CVPD-EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 220 ~~~L~~lL~~~~G~~v~~~~-iV~D-d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
...+...|++ .|.++..+. +.++ +.+.+.+.++.+.+. ++|+||-.||-|+-+
T Consensus 45 ~~~v~~~L~~-~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~-~~d~IIaiGGGsviD 99 (377)
T cd08188 45 VDRVIESLEE-AGLEYVVFSDVSPNPRDEEVMAGAELYLEN-GCDVIIAVGGGSPID 99 (377)
T ss_pred HHHHHHHHHH-cCCeEEEeCCCCCCCCHHHHHHHHHHHHhc-CCCEEEEeCCchHHH
Confidence 4567888888 888876664 4332 355677777666554 599999999987654
No 269
>PF09002 DUF1887: Domain of unknown function (DUF1887); InterPro: IPR015093 This entry represents a set of hypothetical bacterial and archaeal proteins. ; PDB: 1XMX_A.
Probab=21.83 E-value=1.8e+02 Score=29.31 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=39.1
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcC-CCHHHHHHHHHHHHhCC--CCcEEE-EeCCccC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVP-DEMEEIKDKLKYWVDQS--KVDLIF-TSGGTGM 272 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~-Dd~e~I~~aL~~a~~~~--~~DlVI-TTGGts~ 272 (338)
++-++.+|.|.+. ..-...|.+.|+. .|..+....+.+ .|.+.+++.+.+.+++. +.++++ .||||-+
T Consensus 26 ~p~kvvlI~t~~~-------~~~~~~L~~~l~~-~~~~~e~~~i~d~~d~~~i~~~l~~l~~~~~~~~~i~lNlTGGTK~ 97 (381)
T PF09002_consen 26 KPDKVVLIGTEDM-------KEKAERLKSVLKQ-RGIKVEFFEIPDEYDIEEIKESLEQLLEKLKAGDEIILNLTGGTKL 97 (381)
T ss_dssp ---EEEEEE-GGG-------HHHHHHHHHHHHH-TT-EEEEEE--SSS-HHHHHHHHHHHHHHHHHT-EEEEE-SSS-HH
T ss_pred CCCEEEEEECchH-------HHHHHHHHHHHHh-cCCCceEEecCChhhHHHHHHHHHHHHHhccCCCeEEEEeCCChHH
Confidence 3344555554443 2344578889999 999887666543 58888888888875432 257888 8999854
No 270
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor. Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.
Probab=21.80 E-value=3.1e+02 Score=27.08 Aligned_cols=67 Identities=13% Similarity=0.098 Sum_probs=45.4
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCC---HHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDE---MEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd---~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
+..+|++|.-.++- | ......+.+.+++ .|+++.....++.+ ...+.+.|.++... ++|+||..+..
T Consensus 175 ~~k~vaii~~~~~~--g---~~~~~~~~~~l~~-~gi~i~~~~~~~~~~~~~~d~~~~l~~i~~~-~~dvIil~~~~ 244 (410)
T cd06363 175 GWNWVAFLGSDDEY--G---RDGLQLFSELIAN-TGICIAYQGLIPLDTDPETDYQQILKQINQT-KVNVIVVFASR 244 (410)
T ss_pred CCcEEEEEEeCChh--H---HHHHHHHHHHHHH-CCeEEEEEEEecCCCchHHHHHHHHHHHhcC-CCeEEEEEcCh
Confidence 45678888754442 2 2234567778888 89988877777653 55788888877654 58999976644
No 271
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=21.75 E-value=4.2e+02 Score=25.47 Aligned_cols=71 Identities=14% Similarity=0.090 Sum_probs=42.7
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcC---CCHHHHHHHHHHHHhCC---CCcEEEEe-CC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVP---DEMEEIKDKLKYWVDQS---KVDLIFTS-GG 269 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~---Dd~e~I~~aL~~a~~~~---~~DlVITT-GG 269 (338)
-+.+||||+.-+-. .-..++..+=+++..+++..+...= +-+.+|.++|+.+-... ++|+||.. ||
T Consensus 13 ~p~~I~vITs~~gA-------a~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGG 85 (319)
T PF02601_consen 13 FPKRIAVITSPTGA-------AIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGG 85 (319)
T ss_pred CCCEEEEEeCCchH-------HHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCC
Confidence 35689999965431 1123444444442346666555432 56889999999986542 48988754 66
Q ss_pred ccCCC
Q psy7342 270 TGMSP 274 (338)
Q Consensus 270 ts~G~ 274 (338)
-|..+
T Consensus 86 Gs~eD 90 (319)
T PF02601_consen 86 GSIED 90 (319)
T ss_pred CChHH
Confidence 55544
No 272
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=21.63 E-value=3.9e+02 Score=23.24 Aligned_cols=82 Identities=11% Similarity=0.111 Sum_probs=52.6
Q ss_pred HHhhCCCceeEeecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcE
Q psy7342 184 QRCSTSMKYWELVRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDL 263 (338)
Q Consensus 184 lLas~Gi~~v~V~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~Dl 263 (338)
++...+.... .+|++.+++=.+. +...=.|-..+.+.+++ .|+.++.. +.-.+.+.++-. .+ +|+
T Consensus 91 ~~~~~~~~~~---~~p~i~~i~R~~~---~~R~i~Ne~el~~~l~~-~~~~~v~~-----~~~s~~eqv~~~-~~--a~v 155 (206)
T PF04577_consen 91 IRRKLNLPPP---KRPRILYISRRKS---GSRRILNEDELLEILKK-YGFEVVDP-----EDLSFEEQVKLF-AS--AKV 155 (206)
T ss_pred HHHHhCCccc---CCCeEEEEecCCC---CCCcCcCHHHHHHHHhh-CCeEEEeC-----CCCCHHHHHHHh-cC--CCE
Confidence 4455555553 4568878775221 33344566777799999 99775552 233377777744 33 799
Q ss_pred EEEeCCccCCCCCChHH
Q psy7342 264 IFTSGGTGMSPRDVTPE 280 (338)
Q Consensus 264 VITTGGts~G~~D~t~e 280 (338)
||+.=|+++.--=+.++
T Consensus 156 iig~hGs~l~n~~F~~~ 172 (206)
T PF04577_consen 156 IIGPHGSALTNLLFMPP 172 (206)
T ss_pred EEecCchHhheeeecCC
Confidence 99999998876555443
No 273
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=21.58 E-value=3.4e+02 Score=26.75 Aligned_cols=99 Identities=14% Similarity=0.182 Sum_probs=68.9
Q ss_pred HHHHHHHHHcccCCEEEEEEEcCCCHHH-------HHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhccccccCC
Q psy7342 220 GPLLAQLLQEDFQHAHILKTCVPDEMEE-------IKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVPC 292 (338)
Q Consensus 220 ~~~L~~lL~~~~G~~v~~~~iV~Dd~e~-------I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l~~~~lpG 292 (338)
|..|.+.|++ .|++++...--+...+. ..+.+.+..+. ++|+||---|-++.++=++++-=+.+.+-.+-.
T Consensus 11 G~~L~~~L~~-~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~-~~DavINLAG~~I~~rrWt~~~K~~i~~SRi~~ 88 (297)
T COG1090 11 GRALTARLRK-GGHQVTILTRRPPKASQNLHPNVTLWEGLADALTL-GIDAVINLAGEPIAERRWTEKQKEEIRQSRINT 88 (297)
T ss_pred hHHHHHHHHh-CCCeEEEEEcCCcchhhhcCccccccchhhhcccC-CCCEEEECCCCccccccCCHHHHHHHHHHHhHH
Confidence 5678888888 88887765543332222 23555555553 499999999999999988888777776665555
Q ss_pred hHHHHHHhc-CCCCCccccceeEEEecCc
Q psy7342 293 IEHIIQTEG-LKVTPLAMLSRFKGNCPKK 320 (338)
Q Consensus 293 ~~e~~~~~s-~~~~p~A~lsR~vaGi~g~ 320 (338)
-......+. .+..|..+++=+..|++|.
T Consensus 89 T~~L~e~I~~~~~~P~~~isaSAvGyYG~ 117 (297)
T COG1090 89 TEKLVELIAASETKPKVLISASAVGYYGH 117 (297)
T ss_pred HHHHHHHHHhccCCCcEEEecceEEEecC
Confidence 555554444 3445778889888999984
No 274
>PRK14558 pyrH uridylate kinase; Provisional
Probab=21.56 E-value=3e+02 Score=25.27 Aligned_cols=65 Identities=9% Similarity=0.124 Sum_probs=40.5
Q ss_pred cHHHHHHHHHcccCCEEEEEEEcCCC---HHHHHHHHHHHHhCCCCcEEEEeCCc--cCCCCCChHHHHHhcc
Q psy7342 219 SGPLLAQLLQEDFQHAHILKTCVPDE---MEEIKDKLKYWVDQSKVDLIFTSGGT--GMSPRDVTPEAMNHLI 286 (338)
Q Consensus 219 N~~~L~~lL~~~~G~~v~~~~iV~Dd---~e~I~~aL~~a~~~~~~DlVITTGGt--s~G~~D~t~eal~~l~ 286 (338)
|..++...|.+ +|.......-+-.. ...-.+.+..+++. -.+.|++|+. ..+..|.+...+....
T Consensus 76 n~~~~~~~l~~-~gi~a~~~~~~~~~~~~~~~~~~~i~~ll~~--g~vpV~~G~~~~~~~~~D~~a~~lA~~l 145 (231)
T PRK14558 76 NALYLKDIFEK-SGLKAVIVSQIVNLPSVEPINYDDIELYFRA--GYIVIFAGGTSNPFFTTDTAAALRAVEM 145 (231)
T ss_pred HHHHHHHHHHH-cCCCeEEeccccccchhhhhhHHHHHHHHHC--CCEEEEECCCCCCCCCcHHHHHHHHHHc
Confidence 45567888888 99875433322111 12235667777776 3688899965 4566788877776643
No 275
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=21.51 E-value=2.2e+02 Score=28.77 Aligned_cols=48 Identities=15% Similarity=0.187 Sum_probs=35.8
Q ss_pred cHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 219 SGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 219 N~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
...++..++++ .|.++..-..+|=+..++...|++.... ++|+|+.|-
T Consensus 150 ~Nri~r~~l~~-~GgevvgE~Y~plg~td~~~ii~~I~~~-~Pd~V~stl 197 (363)
T PF13433_consen 150 SNRIIRDLLEA-RGGEVVGERYLPLGATDFDPIIAEIKAA-KPDFVFSTL 197 (363)
T ss_dssp HHHHHHHHHHH-TT-EEEEEEEE-S-HHHHHHHHHHHHHH-T-SEEEEE-
T ss_pred HHHHHHHHHHH-cCCEEEEEEEecCCchhHHHHHHHHHhh-CCCEEEEeC
Confidence 34677889999 9999999999998888888888887765 599999653
No 276
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=21.28 E-value=5.2e+02 Score=30.60 Aligned_cols=111 Identities=10% Similarity=0.046 Sum_probs=57.8
Q ss_pred cCceEEEEecCCCccCCeeecCcHH-HHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGP-LLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPR 275 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~-~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~ 275 (338)
.+|||+|+.. +| +|+. -+...++. .|+++.. -+..|=.+. . ..+++ +|+++..||-|.|+
T Consensus 1034 ~~pkv~il~~-----pG----~N~~~e~~~Af~~-aG~~~~~-v~~~dl~~~---~--~~l~~--~~~l~~~GGFS~gD- 1094 (1290)
T PRK05297 1034 ARPKVAILRE-----QG----VNSHVEMAAAFDR-AGFDAID-VHMSDLLAG---R--VTLED--FKGLVACGGFSYGD- 1094 (1290)
T ss_pred CCCeEEEEEC-----CC----CCCHHHHHHHHHH-cCCCeEE-EEeecCcCC---C--CChhh--CcEEEECCccCCcc-
Confidence 4689998873 34 2322 23445557 8998743 343441000 0 12444 89999999999987
Q ss_pred CChHHHHHhccccc--cCChHHHHHHhcCCCCCccccceeEEEecCchHHHHHHH-hhhcccc
Q psy7342 276 DVTPEAMNHLIDKK--VPCIEHIIQTEGLKVTPLAMLSRFKGNCPKKWVKLIRRQ-NVIPWLG 335 (338)
Q Consensus 276 D~t~eal~~l~~~~--lpG~~e~~~~~s~~~~p~A~lsR~vaGi~g~~v~~a~~~-~IlP~l~ 335 (338)
+. .+=+-+.... -|.+.+.+..+..+. ..++.|++ |-+.+..+- .|+|--.
T Consensus 1095 -~l-gsg~~~a~~~~~n~~~~~~~~~f~~~~------d~~~LGiC-NGfQ~L~~lg~l~p~~~ 1148 (1290)
T PRK05297 1095 -VL-GAGEGWAKSILFNPRLRDQFEAFFARP------DTFALGVC-NGCQMMSNLKEIIPGAE 1148 (1290)
T ss_pred -cc-hHHHHHHHHhhccHHHHHHHHHHHhCC------CceEEEEc-HHHHHHHHhCCccCCCC
Confidence 32 2211111111 134445555433222 25667877 566655443 3566533
No 277
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=21.23 E-value=4.4e+02 Score=26.47 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=40.1
Q ss_pred HHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCCh
Q psy7342 220 GPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVT 278 (338)
Q Consensus 220 ~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t 278 (338)
=.-+-+.|++ .|+++...-..||..+--.+.|+........+-++|| ++|.+
T Consensus 245 P~rFf~tL~~-~g~~~~~~~~FpDH~~f~~~~l~~l~~~~~~~~Ll~T------eKDaV 296 (336)
T COG1663 245 PQRFFATLRN-LGIQVVETLAFPDHYDFSAADLEDLAKKAQADGLLTT------EKDAV 296 (336)
T ss_pred hHHHHHHHHH-cCcceeeeecCCchhhccHHHHHHHHhhhccceEEee------cccee
Confidence 3566778999 9999999999999998888888888765334446654 67765
No 278
>PRK00074 guaA GMP synthase; Reviewed
Probab=21.17 E-value=3.5e+02 Score=28.40 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=36.1
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
.+|.||-.|+ .+...+...|++ .|....-... ..+.+.| .+. .+|-||.+||-+
T Consensus 4 ~~i~vlD~Gs---------q~~~li~r~lre-lg~~~~v~p~-~~~~~~l----~~~----~~dgIIlsGGp~ 57 (511)
T PRK00074 4 DKILILDFGS---------QYTQLIARRVRE-LGVYSEIVPY-DISAEEI----RAF----NPKGIILSGGPA 57 (511)
T ss_pred CEEEEEECCC---------CcHHHHHHHHHH-CCCeEEEEEC-CCCHHHH----hcc----CCCEEEECCCCc
Confidence 4688888775 588999999999 9975443321 2223333 221 269999999865
No 279
>COG0416 PlsX Fatty acid/phospholipid biosynthesis enzyme [Lipid metabolism]
Probab=21.16 E-value=1.1e+02 Score=30.62 Aligned_cols=89 Identities=16% Similarity=0.082 Sum_probs=50.4
Q ss_pred CcccCCCcee--ChhcHHHHHhhCC---CceeEeecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEc
Q psy7342 167 SQQYSTTQVI--RPDTNHAQRCSTS---MKYWELVRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCV 241 (338)
Q Consensus 167 e~ll~~G~~l--~p~~i~~lLas~G---i~~v~V~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV 241 (338)
.+++..|--+ +|.++ --.|-.| .+.+.=.++|||+++.+|.|-..|. ....--..+|++ ... ..+++-+
T Consensus 140 ~~~LDvGANvd~~~~~L-~qfA~MG~~ya~~v~~~~~PrVgLLNIG~Ee~KG~---e~~kea~~lLk~-~~~-~nF~Gnv 213 (338)
T COG0416 140 TVVLDVGANVDCKPEHL-VQFALMGSAYAEKVLGIKNPRVGLLNIGTEEIKGN---ELVKEAYELLKE-TPL-INFIGNV 213 (338)
T ss_pred eEEEeCCCCCCCCHHHH-HHHHHHHHHHHHHhcCCCCCcEEEEecccccccCC---HHHHHHHHHHHh-CCC-Cceeeec
Confidence 5555555544 45555 3333333 3444434689999999999977662 222333456776 332 2344433
Q ss_pred CCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 242 PDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 242 ~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
.- ++.++ +.+|+|+|=|=+|
T Consensus 214 Eg---------~di~~-G~~DVvV~DGFtG 233 (338)
T COG0416 214 EG---------RDILD-GTVDVVVTDGFTG 233 (338)
T ss_pred cc---------ccccc-CCCCEEEeCCcch
Confidence 32 12232 3599999988443
No 280
>KOG3349|consensus
Probab=21.16 E-value=1.5e+02 Score=26.77 Aligned_cols=71 Identities=18% Similarity=0.180 Sum_probs=40.1
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEE--EEEE----EcCCCHHHH-------------HHHHHHHHhCC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAH--ILKT----CVPDEMEEI-------------KDKLKYWVDQS 259 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v--~~~~----iV~Dd~e~I-------------~~aL~~a~~~~ 259 (338)
.+...+++|......-|.-..++-....|++ +|+.- +.++ ..+|..+.+ +..+++.+.+
T Consensus 3 ~~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k-~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~- 80 (170)
T KOG3349|consen 3 LMTVFVTVGTTSFDDLISCVLSEEFLQELQK-RGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRS- 80 (170)
T ss_pred ceEEEEEeccccHHHHHHHHcCHHHHHHHHH-cCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhh-
Confidence 3556777777765444444445555556666 66642 2221 233333322 3345555555
Q ss_pred CCcEEEEeCCccC
Q psy7342 260 KVDLIFTSGGTGM 272 (338)
Q Consensus 260 ~~DlVITTGGts~ 272 (338)
+|+||.-+|+|-
T Consensus 81 -AdlVIsHAGaGS 92 (170)
T KOG3349|consen 81 -ADLVISHAGAGS 92 (170)
T ss_pred -ccEEEecCCcch
Confidence 799999999973
No 281
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=21.08 E-value=6.9e+02 Score=24.06 Aligned_cols=101 Identities=12% Similarity=-0.008 Sum_probs=67.3
Q ss_pred ceeChhcHHHHHhhCCCceeEeecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCE----EEEEEEcCCCHHHHH
Q psy7342 174 QVIRPDTNHAQRCSTSMKYWELVRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHA----HILKTCVPDEMEEIK 249 (338)
Q Consensus 174 ~~l~p~~i~~lLas~Gi~~v~V~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~----v~~~~iV~Dd~e~I~ 249 (338)
..++|.|..++=.++-+++- -..-.|.+++.|.+ .....+...|. +|.+ +.....-..|+....
T Consensus 33 ~~in~~D~~AvEeAlrLke~--~~~~eV~vlt~Gp~--------~a~~~lr~aLA--mGaDraili~d~~~~~~d~~~ta 100 (260)
T COG2086 33 LSINPFDLNAVEEALRLKEK--GYGGEVTVLTMGPP--------QAEEALREALA--MGADRAILITDRAFAGADPLATA 100 (260)
T ss_pred cccChhhHHHHHHHHHhhcc--CCCceEEEEEecch--------hhHHHHHHHHh--cCCCeEEEEecccccCccHHHHH
Confidence 45678777566666666553 23477899999976 33445555454 4654 222224456888899
Q ss_pred HHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhcc
Q psy7342 250 DKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLI 286 (338)
Q Consensus 250 ~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l~ 286 (338)
.+|..++...+.|+||+--.+.=+..-.++.-+.+++
T Consensus 101 ~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~L 137 (260)
T COG2086 101 KALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELL 137 (260)
T ss_pred HHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHh
Confidence 9999999887899888766666566667777777654
No 282
>TIGR02586 cas_devS CRISPR-associated protein DevS. This model represents DevS of Myxococcus xanthus and related proteins of Leptospira interrogans and Gemmata obscuriglobus. This protein is encoded in a cluster of CRISPR-associated (cas) genes, and in the special case of Myxococcus xanthus has taken on a role in the control of fruiting body development. CRISPRs are clustered, regularly interspaced short palidromic repeats. This protein family is related to models TIGR01868, TIGR01895, and TIGR01876.
Probab=21.01 E-value=74 Score=29.23 Aligned_cols=64 Identities=17% Similarity=0.234 Sum_probs=46.9
Q ss_pred CcHHHHHHHHHcccCCEEEEEE-EcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHh
Q psy7342 218 KSGPLLAQLLQEDFQHAHILKT-CVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNH 284 (338)
Q Consensus 218 sN~~~L~~lL~~~~G~~v~~~~-iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~ 284 (338)
.|.|..+++|.. .-+.+..-+ --+++-.++.+.+++++.+ .+-|.=.||.|.|..|.....+.-
T Consensus 87 ~~~P~~qElL~d-~~~iv~~~s~ee~~~~~~L~erl~~Al~~--Pe~i~R~G~LsLGeSd~Lvn~i~l 151 (188)
T TIGR02586 87 NAAPDQQELVID-ARGIVACDGLEAPDSGEELADPMKRALRE--PEKIIRAGGLSLGESSFLIDDARL 151 (188)
T ss_pred ccChhHHHHhhC-ceEEEEEcCccccccchhHHHHHHHHHhC--chheecccceeecchHHhhcceee
Confidence 388999999988 544332221 1122335899999999987 899999999999999987665543
No 283
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=20.88 E-value=2e+02 Score=28.18 Aligned_cols=52 Identities=17% Similarity=0.096 Sum_probs=34.0
Q ss_pred HHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 220 GPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 220 ~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
...+...|++ .+..+..+.-+ -+.+.+.+.++.+.+. ++|.||-.||-|+-+
T Consensus 39 ~~~l~~~L~~-~~~~~~~~~~~-p~~~~v~~~~~~~~~~-~~D~iIavGGGs~~D 90 (347)
T cd08172 39 KPYLPESLAA-GEAFVLRYDGE-CSEENIERLAAQAKEN-GADVIIGIGGGKVLD 90 (347)
T ss_pred HHHHHHHHhc-CeEEEEEeCCC-CCHHHHHHHHHHHHhc-CCCEEEEeCCcHHHH
Confidence 4445555655 56555444333 5677777777776654 599999999987654
No 284
>KOG4435|consensus
Probab=20.78 E-value=1.9e+02 Score=30.09 Aligned_cols=84 Identities=17% Similarity=0.109 Sum_probs=50.7
Q ss_pred HhhCCCceeEeecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEE
Q psy7342 185 RCSTSMKYWELVRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLI 264 (338)
Q Consensus 185 Las~Gi~~v~V~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlV 264 (338)
....|.+.++.-.+|+-..+..--|...+..+|.--....-+|.- .|.+|. ||+-|...-.+++.++++.. .|+|
T Consensus 46 aq~~g~t~vpp~~~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHL-aG~~V~---Ivktd~~gqak~l~e~~~t~-~Dii 120 (535)
T KOG4435|consen 46 AQKYGETTVPPETRPKKVFVLVNPEANKRGCRDQFNKNALPLLHL-AGVQVD---IVKTDNQGQAKALAEAVDTQ-EDII 120 (535)
T ss_pred HHHhccccCCcccccceEEEEechhhccchhhhhhhcccchheee-ccceEE---EEecCcHHHHHHHHHHhccC-CCeE
Confidence 345688887755555544444443333333333222333344555 666554 77777777777777788763 5999
Q ss_pred EEeCCccCC
Q psy7342 265 FTSGGTGMS 273 (338)
Q Consensus 265 ITTGGts~G 273 (338)
+..||-|..
T Consensus 121 ~VaGGDGT~ 129 (535)
T KOG4435|consen 121 YVAGGDGTI 129 (535)
T ss_pred EEecCCCcH
Confidence 999998764
No 285
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=20.59 E-value=3.6e+02 Score=24.20 Aligned_cols=47 Identities=13% Similarity=0.020 Sum_probs=32.2
Q ss_pred eEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 200 CHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 200 rVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
+|.||-.|+ .|-..+..+|++ .|+++... ++ ++ .+++ +|.||..||.
T Consensus 2 ~~~v~~~~~---------~~~~~~~~~l~~-~G~~~~~~---~~-~~--------~~~~--~d~iii~G~~ 48 (200)
T PRK13143 2 MIVIIDYGV---------GNLRSVSKALER-AGAEVVIT---SD-PE--------EILD--ADGIVLPGVG 48 (200)
T ss_pred eEEEEECCC---------ccHHHHHHHHHH-CCCeEEEE---CC-HH--------HHcc--CCEEEECCCC
Confidence 566666553 577889999999 99987654 22 21 1233 8999998753
No 286
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=20.59 E-value=2.9e+02 Score=27.55 Aligned_cols=65 Identities=11% Similarity=0.107 Sum_probs=40.3
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCH------HHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEM------EEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~------e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
-+|++|...|+- | ......+.+.+++ .|+.+.....+++.. ..+...+.+.+...++|+||..|-
T Consensus 173 ~~Vaii~~~d~y--G---~~~~~~f~~~~~~-~GicIa~~e~~~~~~~~~~~~~~~~~~~~~~ik~~~a~vVvv~~~ 243 (403)
T cd06361 173 NWVGIIITDDDY--G---RSALETFIIQAEA-NGVCIAFKEILPASLSDNTKLNRIIRTTEKIIEENKVNVIVVFAR 243 (403)
T ss_pred cEEEEEEecCch--H---HHHHHHHHHHHHH-CCeEEEEEEEecCccCcchhHHHHHHHHHHHHhcCCCeEEEEEeC
Confidence 346777666553 2 2345677788888 898887777666531 144445555444445899988653
No 287
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=20.57 E-value=4.2e+02 Score=25.66 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=44.8
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCC----EEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQH----AHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~----~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
.--+|+||...|+. | ......+...+++ .|. ++.....++.+...+...|++.... ++|+||..+.
T Consensus 153 ~w~~vaii~~~~~~--g---~~~~~~~~~~~~~-~g~~~~~~v~~~~~~~~~~~d~~~~l~~ik~~-~~~vIvl~~~ 222 (377)
T cd06379 153 KWNKVILLVSDDHE--G---RAAQKRFETLLEE-REIEFKIKVEKVVEFEPGEKNVTSLLQEAKEL-TSRVILLSAS 222 (377)
T ss_pred CCeEEEEEEEcCcc--h---hHHHHHHHHHHHh-cCCccceeeeEEEecCCchhhHHHHHHHHhhc-CCeEEEEEcC
Confidence 44567888776652 2 2245677888988 898 7776666665556677777766543 5899997664
No 288
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=20.52 E-value=3.8e+02 Score=24.08 Aligned_cols=46 Identities=15% Similarity=0.271 Sum_probs=31.2
Q ss_pred HHHHHHHHccc-CCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 221 PLLAQLLQEDF-QHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 221 ~~L~~lL~~~~-G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
..+...+++ . |+++..... .++.+.-.+.++.++.+ ++|.||+.+.
T Consensus 19 ~~i~~~~~~-~~g~~~~~~~~-~~~~~~~~~~i~~~~~~-~vdgiii~~~ 65 (270)
T cd06308 19 DEIQREASN-YPDVELIIADA-ADDNSKQVADIENFIRQ-GVDLLIISPN 65 (270)
T ss_pred HHHHHHHHh-cCCcEEEEEcC-CCCHHHHHHHHHHHHHh-CCCEEEEecC
Confidence 344556666 5 787765433 56777777888887765 5899988753
No 289
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=20.46 E-value=2.1e+02 Score=23.96 Aligned_cols=64 Identities=9% Similarity=0.008 Sum_probs=40.5
Q ss_pred HHHhhCCCceeEeecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcC---CCHHHHHHHHHH
Q psy7342 183 AQRCSTSMKYWELVRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVP---DEMEEIKDKLKY 254 (338)
Q Consensus 183 ~lLas~Gi~~v~V~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~---Dd~e~I~~aL~~ 254 (338)
.++..... +..+++++.+||.-..+..+......+.++|++ .+ ........| +|.+.|.+.++.
T Consensus 72 ~fl~~l~~------~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~-~~-~~~~i~~~~~~~~d~~~~~~~~~~ 138 (140)
T TIGR01754 72 DFIAELGY------KPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGS-SH-PVLKIEQMPHGEQDGRAIYDWLEG 138 (140)
T ss_pred HHHHHhcc------cCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcC-cC-CceeEecCCcccccHHHHHHHHHH
Confidence 55555432 456999999998654445566778888888876 52 334445555 345566665554
No 290
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=20.42 E-value=2.9e+02 Score=25.71 Aligned_cols=63 Identities=10% Similarity=0.022 Sum_probs=42.0
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
.+|+++...++ .| ......+.+.+++ .|+++.....++.+...+...+.++.+. ++|+||..|
T Consensus 136 ~~v~~v~~~~~--~g---~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~d~~~~l~~i~~~-~~~~vi~~~ 198 (334)
T cd06342 136 KKVAIIDDKTA--YG---QGLADEFKKALKA-AGGKVVAREGTTDGATDFSAILTKIKAA-NPDAVFFGG 198 (334)
T ss_pred CEEEEEeCCcc--hh---hHHHHHHHHHHHH-cCCEEEEEecCCCCCccHHHHHHHHHhc-CCCEEEEcC
Confidence 46788764443 12 1234567788888 9999988877775555566666666554 589998765
No 291
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=20.38 E-value=2.6e+02 Score=27.82 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=43.8
Q ss_pred CCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhC-CCCcEEE--EeCCccCCC
Q psy7342 212 NKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQ-SKVDLIF--TSGGTGMSP 274 (338)
Q Consensus 212 ~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~-~~~DlVI--TTGGts~G~ 274 (338)
.|.+.+.+..-+...++. +|+++... .-..|.++|.++|+++... ..+-+|| |+=|-|+..
T Consensus 187 dg~~~~~~~~~~~~k~~a-~Gw~v~~v-~dGhd~~~i~~A~~~a~~~~~kP~~Ii~~TvkG~G~~~ 250 (332)
T PF00456_consen 187 DGPTDIVFSEDIAKKFEA-FGWNVIEV-CDGHDVEAIYAAIEEAKASKGKPTVIIARTVKGKGVPF 250 (332)
T ss_dssp TEEGGGTHHSHHHHHHHH-TT-EEEEE-EETTBHHHHHHHHHHHHHSTSS-EEEEEEE-TTTTSTT
T ss_pred CCCcccccchHHHHHHHH-hhhhhccc-ccCcHHHHHHHHHHHHHhcCCCCceeecceEEecCchh
Confidence 455556666667889999 99998876 5578999999999998754 3466776 787777743
No 292
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.26 E-value=3.3e+02 Score=24.81 Aligned_cols=46 Identities=7% Similarity=-0.122 Sum_probs=33.8
Q ss_pred HHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 220 GPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 220 ~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
...+...+++ .|+.+..... .+|++.-.+.++.++.+ ++|-||...
T Consensus 18 ~~gi~~~~~~-~G~~~~~~~~-~~d~~~~~~~i~~~~~~-~vdgiii~~ 63 (272)
T cd06313 18 KQAADEAGKL-LGVDVTWYGG-ALDAVKQVAAIENMASQ-GWDFIAVDP 63 (272)
T ss_pred HHHHHHHHHH-cCCEEEEecC-CCCHHHHHHHHHHHHHc-CCCEEEEcC
Confidence 3446667788 9998877643 55777788888888875 589888864
No 293
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=20.13 E-value=3.5e+02 Score=26.25 Aligned_cols=67 Identities=16% Similarity=0.325 Sum_probs=44.5
Q ss_pred CcHHHHHHHHHcccCCEEEEEE-----EcCCC-----------HHHHHHHHHHHHhCCCCcEEEEeC--Cc---------
Q psy7342 218 KSGPLLAQLLQEDFQHAHILKT-----CVPDE-----------MEEIKDKLKYWVDQSKVDLIFTSG--GT--------- 270 (338)
Q Consensus 218 sN~~~L~~lL~~~~G~~v~~~~-----iV~Dd-----------~e~I~~aL~~a~~~~~~DlVITTG--Gt--------- 270 (338)
-++.+++..|++ .|....... ++.|+ ...+.+.+...+++ -++.|++| |.
T Consensus 128 lSa~lla~~L~~-~Gi~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~i~~~l~~ll~~--~~vpVv~Gfig~~~~g~~ttl 204 (298)
T cd04244 128 LSAPIFSAALRS-LGIKARALDGGEAGIITDDNFGNARPLPATYERVRKRLLPMLED--GKIPVVTGFIGATEDGAITTL 204 (298)
T ss_pred HHHHHHHHHHHh-CCCCeEEEcHHHcceeecCcccccccchhHHHHHHHHHHHHhhc--CCEEEEeCccccCCCCCEEEe
Confidence 477889999999 998766654 33332 44555566665655 48999988 32
Q ss_pred cCCCCCChHHHHHhccc
Q psy7342 271 GMSPRDVTPEAMNHLID 287 (338)
Q Consensus 271 s~G~~D~t~eal~~l~~ 287 (338)
|-|..|++.-.+...++
T Consensus 205 gRggsD~~A~~~A~~l~ 221 (298)
T cd04244 205 GRGGSDYSATIIGAALD 221 (298)
T ss_pred cCCChHHHHHHHHHHcC
Confidence 23456888888877543
No 294
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=20.08 E-value=1.9e+02 Score=34.04 Aligned_cols=66 Identities=9% Similarity=0.146 Sum_probs=41.0
Q ss_pred cCceEEEEecCCCccCCeeecCcHH-HHHHHHHcccCCEEEEEEEcCC-CHHHHHHHHHHH---HhCCCCcEEEEeCCcc
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGP-LLAQLLQEDFQHAHILKTCVPD-EMEEIKDKLKYW---VDQSKVDLIFTSGGTG 271 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~-~L~~lL~~~~G~~v~~~~iV~D-d~e~I~~aL~~a---~~~~~~DlVITTGGts 271 (338)
.+|||+|+.- +| +|.. -+...+++ .|+++... ++.| ....|.+.+..+ +++ +|+|+..||-|
T Consensus 976 ~kpkvaIl~~-----pG----tNce~d~a~Af~~-aG~~~~~v-~~~dl~~~~i~~s~~~~~~~l~~--~~~l~~pGGFS 1042 (1239)
T TIGR01857 976 EKPRVVIPVF-----PG----TNSEYDSAKAFEK-EGAEVNLV-IFRNLNEEALVESVETMVDEIDK--SQILMLPGGFS 1042 (1239)
T ss_pred CCCeEEEEEC-----CC----CCCHHHHHHHHHH-cCCceEEE-EEecCcccccccchhhhhccccc--CcEEEEcCccC
Confidence 4789998873 33 3332 23455667 89985444 4444 333444444433 444 89999999999
Q ss_pred CCCC
Q psy7342 272 MSPR 275 (338)
Q Consensus 272 ~G~~ 275 (338)
.|+.
T Consensus 1043 yGD~ 1046 (1239)
T TIGR01857 1043 AGDE 1046 (1239)
T ss_pred cccc
Confidence 9975
Done!