Query psy7342
Match_columns 338
No_of_seqs 226 out of 1849
Neff 5.8
Searched_HMMs 29240
Date Sat Aug 17 00:18:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7342.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7342hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uz5_A MOEA protein, 402AA lon 100.0 2.1E-48 7.2E-53 386.5 22.2 274 49-337 2-322 (402)
2 2fts_A Gephyrin; gephyrin, neu 100.0 2.9E-48 1E-52 387.3 21.1 270 53-337 6-329 (419)
3 1g8l_A Molybdopterin biosynthe 100.0 5.8E-48 2E-52 384.3 20.4 271 53-337 7-319 (411)
4 1wu2_A MOEA protein, molybdopt 100.0 4.4E-47 1.5E-51 376.4 18.9 271 49-337 3-318 (396)
5 3rfq_A Pterin-4-alpha-carbinol 100.0 1.2E-31 4E-36 241.0 10.2 153 179-337 13-177 (185)
6 3pzy_A MOG; ssgcid, seattle st 100.0 5.7E-31 2E-35 232.0 11.5 138 196-337 5-153 (164)
7 1jlj_A Gephyrin; globular alph 100.0 5.6E-31 1.9E-35 237.0 10.7 152 185-337 1-165 (189)
8 2pjk_A 178AA long hypothetical 100.0 1.1E-30 3.9E-35 232.9 11.8 143 194-337 11-172 (178)
9 1y5e_A Molybdenum cofactor bio 100.0 3E-29 1E-33 221.3 12.4 142 193-337 8-162 (169)
10 2g2c_A Putative molybdenum cof 100.0 4.9E-29 1.7E-33 219.6 10.3 137 198-337 5-160 (167)
11 1di6_A MOGA, molybdenum cofact 100.0 1.3E-28 4.4E-33 222.8 10.9 140 197-337 2-165 (195)
12 1mkz_A Molybdenum cofactor bio 99.9 1.5E-27 5.2E-32 211.3 13.2 139 196-337 8-158 (172)
13 2is8_A Molybdopterin biosynthe 99.9 1.3E-27 4.3E-32 210.0 12.1 138 198-337 1-149 (164)
14 2pbq_A Molybdenum cofactor bio 99.9 1.2E-27 3.9E-32 213.1 10.2 139 197-337 4-158 (178)
15 1uuy_A CNX1, molybdopterin bio 99.9 1.2E-26 4.2E-31 204.2 11.2 140 196-337 3-158 (167)
16 3iwt_A 178AA long hypothetical 99.9 1.8E-26 6.3E-31 204.1 11.7 142 195-337 12-172 (178)
17 3kbq_A Protein TA0487; structu 99.9 2.4E-22 8.1E-27 178.5 9.1 99 198-299 3-101 (172)
18 3l4e_A Uncharacterized peptida 90.4 0.42 1.5E-05 42.6 6.1 65 197-271 26-90 (206)
19 1wl8_A GMP synthase [glutamine 81.0 12 0.0004 31.8 10.2 72 201-291 3-74 (189)
20 2vvp_A Ribose-5-phosphate isom 77.3 2.3 8E-05 36.8 4.4 52 222-274 20-75 (162)
21 1o1x_A Ribose-5-phosphate isom 76.0 3.7 0.00013 35.4 5.3 52 222-274 29-83 (155)
22 2vvr_A Ribose-5-phosphate isom 75.6 3.8 0.00013 35.0 5.2 53 221-274 17-72 (149)
23 2ppw_A Conserved domain protei 74.6 3.6 0.00012 37.3 5.0 53 221-274 23-81 (216)
24 3s99_A Basic membrane lipoprot 73.4 5 0.00017 38.3 6.1 69 196-268 24-94 (356)
25 1ccw_A Protein (glutamate muta 73.1 11 0.00038 30.8 7.4 63 198-271 3-65 (137)
26 3he8_A Ribose-5-phosphate isom 72.5 5.2 0.00018 34.2 5.3 52 222-274 17-71 (149)
27 3ph3_A Ribose-5-phosphate isom 72.3 5.1 0.00017 35.0 5.3 67 196-274 18-91 (169)
28 1fy2_A Aspartyl dipeptidase; s 71.8 4.1 0.00014 36.5 4.7 62 197-272 30-91 (229)
29 1yzf_A Lipase/acylhydrolase; s 70.9 4.3 0.00015 33.2 4.4 68 203-270 4-77 (195)
30 3c5y_A Ribose/galactose isomer 70.7 5.1 0.00017 36.6 5.1 74 197-274 18-97 (231)
31 3s5p_A Ribose 5-phosphate isom 68.8 5.4 0.00019 34.7 4.6 52 222-274 38-92 (166)
32 3ono_A Ribose/galactose isomer 68.2 6.4 0.00022 35.6 5.2 52 222-274 24-80 (214)
33 3giu_A Pyrrolidone-carboxylate 66.5 4.4 0.00015 36.4 3.7 79 202-282 5-83 (215)
34 2yxb_A Coenzyme B12-dependent 65.8 13 0.00044 31.4 6.4 77 197-285 17-93 (161)
35 1qdl_B Protein (anthranilate s 65.4 37 0.0013 28.9 9.5 47 217-272 11-57 (195)
36 3en0_A Cyanophycinase; serine 64.0 4.5 0.00015 38.0 3.4 69 183-270 47-120 (291)
37 3hp4_A GDSL-esterase; psychrot 62.9 15 0.00052 29.9 6.2 68 202-270 4-76 (185)
38 3sgw_A Ribose 5-phosphate isom 62.4 8.9 0.0003 33.9 4.8 52 222-274 46-103 (184)
39 3fij_A LIN1909 protein; 11172J 61.3 15 0.00051 33.0 6.4 66 197-271 3-72 (254)
40 1y80_A Predicted cobalamin bin 60.8 20 0.0007 31.0 7.0 77 197-285 87-163 (210)
41 1i1q_B Anthranilate synthase c 60.1 14 0.00048 31.5 5.7 69 199-284 1-72 (192)
42 4hps_A Pyrrolidone-carboxylate 60.1 5.8 0.0002 36.1 3.3 91 188-282 13-104 (228)
43 2vpi_A GMP synthase; guanine m 59.3 9.3 0.00032 33.8 4.5 54 199-271 25-78 (218)
44 1ivn_A Thioesterase I; hydrola 57.6 7.7 0.00026 32.1 3.5 67 203-271 4-73 (190)
45 3g1w_A Sugar ABC transporter; 57.4 38 0.0013 29.8 8.3 69 197-270 3-71 (305)
46 3m9w_A D-xylose-binding peripl 57.1 50 0.0017 29.2 9.1 67 198-270 2-68 (313)
47 3ro0_A Pyrrolidone-carboxylate 56.8 3.8 0.00013 37.1 1.5 79 202-282 4-83 (223)
48 3rjt_A Lipolytic protein G-D-S 55.5 13 0.00046 30.6 4.7 71 200-270 8-93 (216)
49 2vpt_A Lipolytic enzyme; ester 55.5 25 0.00086 29.7 6.5 71 199-270 4-93 (215)
50 3ezx_A MMCP 1, monomethylamine 54.1 11 0.00038 33.4 4.1 78 197-285 91-169 (215)
51 3ksm_A ABC-type sugar transpor 53.7 36 0.0012 29.2 7.4 67 199-269 1-68 (276)
52 8abp_A L-arabinose-binding pro 52.6 35 0.0012 30.0 7.2 65 198-269 2-66 (306)
53 1l9x_A Gamma-glutamyl hydrolas 51.0 19 0.00065 33.6 5.4 86 169-275 14-102 (315)
54 2i2x_B MTAC, methyltransferase 50.8 78 0.0027 28.4 9.4 77 197-285 122-198 (258)
55 3h75_A Periplasmic sugar-bindi 50.8 58 0.002 29.5 8.6 81 197-286 2-83 (350)
56 3ixl_A Amdase, arylmalonate de 50.5 89 0.003 27.8 9.6 85 183-285 110-204 (240)
57 1a2z_A Pyrrolidone carboxyl pe 50.2 20 0.00068 32.2 5.1 77 203-281 4-81 (220)
58 3lkv_A Uncharacterized conserv 50.0 43 0.0015 30.3 7.5 66 197-268 7-77 (302)
59 1x10_A Pyrrolidone-carboxylate 49.7 14 0.00048 32.8 4.0 77 203-281 3-80 (208)
60 1u2m_A Histone-like protein HL 48.1 15 0.00052 30.0 3.7 39 247-285 101-142 (143)
61 2hqb_A Transcriptional activat 47.8 33 0.0011 30.9 6.3 68 198-269 5-72 (296)
62 3lac_A Pyrrolidone-carboxylate 47.7 7.7 0.00026 34.8 2.0 79 202-282 3-82 (215)
63 3l6u_A ABC-type sugar transpor 47.3 95 0.0032 26.8 9.2 67 197-269 7-73 (293)
64 3lou_A Formyltetrahydrofolate 46.5 18 0.00063 33.7 4.5 76 197-273 94-184 (292)
65 1iu8_A Pyrrolidone-carboxylate 45.6 19 0.00064 32.0 4.1 75 203-281 3-77 (206)
66 3n0v_A Formyltetrahydrofolate 45.0 19 0.00065 33.5 4.3 77 197-274 89-180 (286)
67 2ebj_A Pyrrolidone carboxyl pe 44.4 16 0.00053 32.2 3.4 77 203-282 2-78 (192)
68 3uug_A Multiple sugar-binding 44.3 76 0.0026 28.1 8.2 68 197-270 2-69 (330)
69 3o1l_A Formyltetrahydrofolate 44.1 21 0.00073 33.5 4.5 81 197-278 104-199 (302)
70 4em8_A Ribose 5-phosphate isom 43.2 8.9 0.0003 32.7 1.5 50 222-274 24-77 (148)
71 2h3h_A Sugar ABC transporter, 40.9 82 0.0028 27.8 7.8 66 199-270 2-67 (313)
72 3bzw_A Putative lipase; protei 39.9 26 0.00089 31.0 4.3 69 200-270 26-98 (274)
73 3rot_A ABC sugar transporter, 39.8 95 0.0033 27.2 8.0 67 198-269 3-70 (297)
74 2fqx_A Membrane lipoprotein TM 39.1 61 0.0021 29.4 6.8 68 197-269 3-71 (318)
75 3tb6_A Arabinose metabolism tr 39.0 1.9E+02 0.0063 24.9 9.8 68 198-271 15-82 (298)
76 3k7p_A Ribose 5-phosphate isom 37.7 40 0.0014 29.5 4.9 53 222-274 39-95 (179)
77 3jy6_A Transcriptional regulat 37.4 1.8E+02 0.006 25.0 9.3 69 197-271 6-74 (276)
78 1gpm_A GMP synthetase, XMP ami 37.4 78 0.0027 31.6 7.7 55 198-271 7-61 (525)
79 3d02_A Putative LACI-type tran 36.9 53 0.0018 28.7 5.8 67 198-269 4-70 (303)
80 3egc_A Putative ribose operon 35.2 1.4E+02 0.0048 25.8 8.3 69 197-271 7-75 (291)
81 2xed_A Putative maleate isomer 34.9 1.8E+02 0.0063 26.2 9.3 73 199-281 147-228 (273)
82 4gud_A Imidazole glycerol phos 34.7 71 0.0024 27.1 6.1 46 200-269 4-49 (211)
83 3l49_A ABC sugar (ribose) tran 33.9 1.2E+02 0.0039 26.3 7.5 67 197-269 4-70 (291)
84 2qh8_A Uncharacterized protein 33.9 98 0.0034 27.4 7.2 66 197-268 7-77 (302)
85 3mil_A Isoamyl acetate-hydroly 33.6 47 0.0016 27.9 4.7 69 202-270 5-82 (240)
86 3brs_A Periplasmic binding pro 33.3 1.3E+02 0.0045 25.8 7.8 70 197-269 4-74 (289)
87 4gxh_A Pyrrolidone-carboxylate 33.1 23 0.00079 31.6 2.7 77 203-280 5-81 (216)
88 1meo_A Phosophoribosylglycinam 31.9 1.9E+02 0.0066 25.2 8.6 46 224-270 43-89 (209)
89 2ywd_A Glutamine amidotransfer 31.8 51 0.0017 27.5 4.6 48 198-270 2-49 (191)
90 2fn9_A Ribose ABC transporter, 31.4 2.1E+02 0.0072 24.5 8.9 65 199-269 3-67 (290)
91 3lft_A Uncharacterized protein 31.1 1.1E+02 0.0036 27.0 6.9 65 198-268 2-70 (295)
92 4ds3_A Phosphoribosylglycinami 31.0 46 0.0016 29.4 4.3 45 225-270 51-96 (209)
93 3e61_A Putative transcriptiona 30.6 1.5E+02 0.005 25.4 7.6 66 197-268 7-72 (277)
94 3d54_D Phosphoribosylformylgly 30.4 35 0.0012 29.0 3.4 53 198-273 2-54 (213)
95 3auf_A Glycinamide ribonucleot 30.2 80 0.0027 28.2 5.8 49 223-272 64-113 (229)
96 2fep_A Catabolite control prot 30.2 2.2E+02 0.0075 24.7 8.8 67 197-269 15-81 (289)
97 3tqr_A Phosphoribosylglycinami 29.9 91 0.0031 27.6 6.1 47 225-272 48-95 (215)
98 2e4u_A Metabotropic glutamate 29.1 1.5E+02 0.0051 29.1 8.1 65 199-269 187-253 (555)
99 3o1i_D Periplasmic protein TOR 28.8 2.1E+02 0.007 24.7 8.3 78 197-280 4-83 (304)
100 2pju_A Propionate catabolism o 28.8 50 0.0017 29.5 4.2 50 220-271 25-74 (225)
101 3pef_A 6-phosphogluconate dehy 28.7 55 0.0019 29.3 4.5 57 199-268 2-65 (287)
102 2h78_A Hibadh, 3-hydroxyisobut 28.6 69 0.0024 28.7 5.2 58 198-268 3-67 (302)
103 2vk2_A YTFQ, ABC transporter p 28.3 2E+02 0.0068 25.1 8.2 67 198-270 2-68 (306)
104 3p9x_A Phosphoribosylglycinami 28.2 77 0.0026 28.1 5.3 50 222-272 43-93 (211)
105 1ka9_H Imidazole glycerol phos 28.2 65 0.0022 27.3 4.7 47 199-269 3-49 (200)
106 3brq_A HTH-type transcriptiona 28.1 2.4E+02 0.0082 24.1 8.6 69 197-269 18-86 (296)
107 1xrs_B D-lysine 5,6-aminomutas 28.1 58 0.002 30.0 4.6 65 197-272 119-192 (262)
108 1a9x_B Carbamoyl phosphate syn 28.0 1.7E+02 0.0056 28.2 8.0 73 198-291 190-263 (379)
109 3obi_A Formyltetrahydrofolate 27.6 22 0.00077 33.1 1.7 86 187-274 76-180 (288)
110 1jkx_A GART;, phosphoribosylgl 27.3 1.1E+02 0.0036 27.0 6.0 47 223-270 42-89 (212)
111 3o74_A Fructose transport syst 27.3 2.8E+02 0.0096 23.3 9.0 67 198-270 2-68 (272)
112 3p2y_A Alanine dehydrogenase/p 26.9 71 0.0024 31.0 5.1 64 219-285 195-292 (381)
113 4h08_A Putative hydrolase; GDS 26.8 54 0.0018 27.1 3.8 64 198-270 20-84 (200)
114 3rg8_A Phosphoribosylaminoimid 26.2 2.6E+02 0.0089 23.8 8.0 79 198-288 2-82 (159)
115 2a9v_A GMP synthase; structura 26.2 28 0.00094 30.4 1.9 52 197-269 12-63 (212)
116 4dio_A NAD(P) transhydrogenase 25.8 1.5E+02 0.0053 28.8 7.4 34 250-285 267-302 (405)
117 2q5c_A NTRC family transcripti 25.8 66 0.0023 27.8 4.3 46 220-271 17-62 (196)
118 4dll_A 2-hydroxy-3-oxopropiona 25.7 70 0.0024 29.3 4.7 59 198-269 31-96 (320)
119 1gml_A T-complex protein 1 sub 25.7 88 0.003 26.7 5.1 71 196-285 25-99 (178)
120 3gbv_A Putative LACI-family tr 25.7 2.1E+02 0.0072 24.5 7.8 70 197-270 7-79 (304)
121 3da8_A Probable 5'-phosphoribo 25.5 1.4E+02 0.0049 26.3 6.6 48 224-272 53-101 (215)
122 3dci_A Arylesterase; SGNH_hydr 25.1 47 0.0016 28.4 3.2 80 188-270 12-111 (232)
123 3nrb_A Formyltetrahydrofolate 25.1 22 0.00075 33.1 1.1 77 197-274 87-179 (287)
124 2o20_A Catabolite control prot 25.0 2.9E+02 0.0098 24.5 8.8 67 197-269 62-128 (332)
125 3tqi_A GMP synthase [glutamine 24.9 32 0.0011 34.5 2.4 75 198-291 10-84 (527)
126 1fui_A L-fucose isomerase; ket 24.9 61 0.0021 33.4 4.4 69 197-267 5-86 (591)
127 1dhr_A Dihydropteridine reduct 24.8 1.3E+02 0.0045 25.7 6.2 73 219-292 19-111 (241)
128 3oow_A Phosphoribosylaminoimid 24.7 1.8E+02 0.006 25.1 6.7 78 198-288 5-84 (166)
129 2gp4_A 6-phosphogluconate dehy 24.3 41 0.0014 34.9 3.0 76 194-270 81-174 (628)
130 3hs3_A Ribose operon repressor 24.2 2.3E+02 0.0079 24.3 7.7 67 197-268 9-75 (277)
131 3a9s_A D-arabinose isomerase; 24.0 69 0.0024 33.0 4.7 73 196-269 9-93 (595)
132 2fvy_A D-galactose-binding per 24.0 3.1E+02 0.01 23.6 8.5 65 199-269 3-68 (309)
133 3bfj_A 1,3-propanediol oxidore 23.8 1.2E+02 0.004 28.7 6.1 54 219-274 51-106 (387)
134 1rrm_A Lactaldehyde reductase; 23.7 1.1E+02 0.0039 28.7 6.0 53 220-274 48-102 (386)
135 3ox4_A Alcohol dehydrogenase 2 23.7 87 0.003 29.8 5.1 53 220-274 48-102 (383)
136 3doj_A AT3G25530, dehydrogenas 23.5 79 0.0027 28.8 4.6 59 197-268 20-85 (310)
137 3r75_A Anthranilate/para-amino 23.4 95 0.0032 32.1 5.6 63 216-291 455-523 (645)
138 3sm9_A Mglur3, metabotropic gl 23.4 1.8E+02 0.0062 28.0 7.5 73 183-269 178-252 (479)
139 2iss_D Glutamine amidotransfer 23.4 1.3E+02 0.0045 25.6 5.8 49 196-269 18-66 (208)
140 2qu7_A Putative transcriptiona 23.1 1.9E+02 0.0065 24.9 6.9 68 197-271 7-74 (288)
141 2o14_A Hypothetical protein YX 23.1 92 0.0031 29.4 5.1 69 201-270 163-240 (375)
142 4b79_A PA4098, probable short- 23.0 1.6E+02 0.0055 26.3 6.5 81 200-292 12-110 (242)
143 1xmp_A PURE, phosphoribosylami 22.9 1.9E+02 0.0065 25.0 6.5 79 197-288 10-90 (170)
144 3bul_A Methionine synthase; tr 22.4 1.1E+02 0.0039 31.2 5.9 77 197-285 97-173 (579)
145 2dgd_A 223AA long hypothetical 22.4 3.3E+02 0.011 23.2 8.3 73 199-281 109-191 (223)
146 2dri_A D-ribose-binding protei 22.3 2.7E+02 0.0094 23.7 7.8 64 199-268 2-65 (271)
147 4eys_A MCCC family protein; MC 22.3 1.6E+02 0.0056 27.7 6.7 80 199-281 6-93 (346)
148 3pdu_A 3-hydroxyisobutyrate de 22.2 87 0.003 27.9 4.6 58 199-269 2-66 (287)
149 3ce9_A Glycerol dehydrogenase; 22.2 1.3E+02 0.0045 28.0 5.9 53 219-274 49-102 (354)
150 1z0s_A Probable inorganic poly 21.9 1.3E+02 0.0045 27.7 5.7 51 198-271 29-79 (278)
151 3kcq_A Phosphoribosylglycinami 21.7 73 0.0025 28.3 3.8 43 225-272 52-94 (215)
152 1ooe_A Dihydropteridine reduct 21.6 1.4E+02 0.0048 25.4 5.6 73 219-292 15-107 (236)
153 3dbi_A Sugar-binding transcrip 21.6 2.8E+02 0.0094 24.6 7.9 69 197-269 60-128 (338)
154 1byk_A Protein (trehalose oper 21.5 2.7E+02 0.0092 23.4 7.5 67 198-270 2-68 (255)
155 3ugj_A Phosphoribosylformylgly 21.5 75 0.0026 35.8 4.6 60 197-274 1046-1106(1303)
156 4e5v_A Putative THUA-like prot 21.4 42 0.0014 31.0 2.2 61 197-268 3-66 (281)
157 2ywr_A Phosphoribosylglycinami 21.4 2.6E+02 0.0089 24.4 7.4 47 223-270 43-90 (216)
158 1o2d_A Alcohol dehydrogenase, 21.4 1.4E+02 0.0049 28.0 6.1 52 221-274 59-112 (371)
159 1rlz_A DHS, deoxyhypusine synt 21.4 41 0.0014 32.7 2.2 24 247-270 111-134 (369)
160 3dc7_A Putative uncharacterize 21.3 36 0.0012 28.8 1.7 65 202-270 23-92 (232)
161 3jtm_A Formate dehydrogenase, 21.3 2.5E+02 0.0085 26.5 7.7 76 197-285 163-246 (351)
162 1dbq_A Purine repressor; trans 20.9 3E+02 0.01 23.5 7.7 68 197-270 6-73 (289)
163 1vjg_A Putative lipase from th 20.9 1.1E+02 0.0039 25.3 4.8 72 198-270 18-98 (218)
164 3p94_A GDSL-like lipase; serin 20.9 58 0.002 26.6 2.8 61 202-270 24-84 (204)
165 2ioy_A Periplasmic sugar-bindi 20.8 4E+02 0.014 22.8 8.7 45 221-268 21-65 (283)
166 4h1h_A LMO1638 protein; MCCF-l 20.7 1.4E+02 0.0049 27.8 5.8 73 198-273 12-92 (327)
167 1di0_A Lumazine synthase; tran 20.5 77 0.0026 27.0 3.5 82 198-284 10-96 (158)
168 1tjy_A Sugar transport protein 20.3 2.1E+02 0.0073 25.3 6.8 66 199-269 4-69 (316)
169 2gk3_A Putative cytoplasmic pr 20.1 1.6E+02 0.0053 26.3 5.8 43 216-269 38-86 (256)
170 3c3k_A Alanine racemase; struc 20.1 2.6E+02 0.009 24.0 7.2 67 197-269 7-73 (285)
171 1jq5_A Glycerol dehydrogenase; 20.0 1.5E+02 0.0052 27.7 6.0 53 219-274 46-100 (370)
No 1
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=100.00 E-value=2.1e-48 Score=386.52 Aligned_cols=274 Identities=15% Similarity=0.084 Sum_probs=231.7
Q ss_pred CcccchhhhHHHHHhhhhhcccCCCCCCCCCCccccchhhhhhhhcCCCCC--CCcc------cccccCCc-------ce
Q psy7342 49 NFTQNAACIDERKELDNKCEIAHAPNKIMPNTSEKADTEKLNEKLNEGIND--HDRH------TKSIDFNG-------IN 113 (338)
Q Consensus 49 ~f~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ad~~~l~~~l~~~~~~--~~~~------~~s~d~~g-------~~ 113 (338)
.|.+..++.||++.+++.+.+ . .++.+++.+|.||+||+++.+.++. |++. +++.|++| ..
T Consensus 2 ~~~~~~s~~eA~~~i~~~~~~-~---~~e~v~l~~A~GrvLA~dv~a~~~~P~f~~SamDGyAv~~~D~~~a~~~~p~~l 77 (402)
T 1uz5_A 2 AFLKVVPLEKALEVVQSFKIS-P---GIEEVPIEKGLGRIAAEDIYSPIDVPPFDRATVDGYAVRAEDTFMASEASPVRL 77 (402)
T ss_dssp ---CCBCHHHHHHHHHHCCCC-C---CEEEEEGGGCTTCBBSSCEECSSCBSSSCEESSSEEEECGGGGTTCCSSSCEEE
T ss_pred CccCCCCHHHHHHHHHhcCCC-C---CcEEEEHHHhCCCeeeeEEEcCCCCCCCcccccCcEEEeehhccccccCCCeEE
Confidence 467788999999988876643 1 2678999999999999999999874 7773 58888864 36
Q ss_pred eEeeeccCCC---CCCCCCcEEEe-eCCCCCCCCcEEE-------------EcCCCCCCCCccccc--ccCCCcccCCCc
Q psy7342 114 TSLGKSGSSY---GSDGCTSAFEV-GGEPWPKKKKFVV-------------KHSVLPPHINLAKPE--WTEKSQQYSTTQ 174 (338)
Q Consensus 114 ~vig~~~~~~---~~~~~g~av~I-TGa~lP~gaDaVV-------------i~~~~~~g~nVr~~G--i~~Ge~ll~~G~ 174 (338)
+++|+..+|. .+..+|+|++| ||+++|+|+|+|| +..++++|+|||++| +++||+|+++|+
T Consensus 78 ~v~~~i~aG~~~~~~l~~g~a~~i~TGa~~P~GadaVV~~E~~~~~~~~v~i~~~~~~g~nir~~Gedv~~G~~ll~~G~ 157 (402)
T 1uz5_A 78 KVIGSVHAGEEPKFKLGKGEAAYISTGAMLPGNADAVIQFEDVERVNGEILIYKPAYPGLGVMKKGIDIEKGRLLVKKGE 157 (402)
T ss_dssp EEEEEECTTCCCCCBCCTTEEEEECTTCBCCBTCCEEEEGGGEEEETTEEEECSCCCTTTTEECTTSSBCTTCEEECTTC
T ss_pred EEeeEEECCCCCCCccCCCcEEEEccCCCCCCCCCEEEEEEEEEecCCEEEEeCCCCCCCCeecCCcEecCCCEEEcCCC
Confidence 6788888774 34578999999 9999999999998 678899999999999 999999999999
Q ss_pred eeChhcHHHHHhhCCCceeEeecCceEEEEecCCCcc-------CCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHH
Q psy7342 175 VIRPDTNHAQRCSTSMKYWELVRSTCHLLALVSDRCF-------NKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEE 247 (338)
Q Consensus 175 ~l~p~~i~~lLas~Gi~~v~V~~~prVaIIstGdEl~-------~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~ 247 (338)
+|+|.+| ++|++.|+.+|+||++|||+||+||||++ +|+++|+|+++|.++|++ +|+++..+++++||++.
T Consensus 158 ~l~p~~i-~llas~G~~~V~V~~~prv~IistGdEl~~~g~~~~~G~i~DsN~~~L~~~l~~-~G~~v~~~~iv~Dd~~~ 235 (402)
T 1uz5_A 158 RLGFKQT-ALLSAVGINKVKVFRKPKVAVISTGNEIVPPGNELKPGQIYDINGRALCDAINE-LGGEGIFMGVARDDKES 235 (402)
T ss_dssp BCCHHHH-HHHHHTTCCEEEEECCCEEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHH-HTSEEEEEEEECSSHHH
T ss_pred EECHHHH-HHHHhCCCceeeecCCCEEEEEEcCccccCCCCCCCCCcEEcchHHHHHHHHHh-CCCeEEEEEEeCCCHHH
Confidence 9999999 99999999999999999999999999996 799999999999999999 99999999999999999
Q ss_pred HHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhccccccCChHHHHHHhcCCCCCcccc----ceeEEEecCchHH
Q psy7342 248 IKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAML----SRFKGNCPKKWVK 323 (338)
Q Consensus 248 I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l~~~~lpG~~e~~~~~s~~~~p~A~l----sR~vaGi~g~~v~ 323 (338)
|+++|++++++ +|+||||||+|+|++|+|+++++++++..++|+ .++++...++ .+.++|+|||++.
T Consensus 236 i~~~l~~a~~~--~DlVittGG~s~g~~D~t~~al~~~G~~~f~~v-------a~~PG~p~~~g~~~~~~v~~LPG~P~s 306 (402)
T 1uz5_A 236 LKALIEKAVNV--GDVVVISGGASGGTKDLTASVIEELGEVKVHGI-------AIQPGKPTIIGVIKGKPVFGLPGYPTS 306 (402)
T ss_dssp HHHHHHHHHHH--CSEEEEECCC-----CHHHHHHHHHSEEEEECB-------SEESCTTCEEEEETTEEEEEECSSHHH
T ss_pred HHHHHHHHhhC--CCEEEEcCCCCCCCcccHHHHHHhhCCEEEeeE-------eecCCCCEEEEEECCEEEEECCCCHHH
Confidence 99999999987 899999999999999999999999975444443 4555432222 4789999999775
Q ss_pred --HHHHHhhhcccccc
Q psy7342 324 --LIRRQNVIPWLGLW 337 (338)
Q Consensus 324 --~a~~~~IlP~l~~~ 337 (338)
.+|+.++.|.|+++
T Consensus 307 a~~~~~~~v~P~L~~~ 322 (402)
T 1uz5_A 307 CLTNFTLLVVPLLLRA 322 (402)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 77888999998764
No 2
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=100.00 E-value=2.9e-48 Score=387.28 Aligned_cols=270 Identities=15% Similarity=0.084 Sum_probs=234.2
Q ss_pred chhhhHHHHHhhhhhcccCCCCCCCCCCccccchhhhhhhhcCCCCC--CCcc------cccccCCcceeEeeeccCCC-
Q psy7342 53 NAACIDERKELDNKCEIAHAPNKIMPNTSEKADTEKLNEKLNEGIND--HDRH------TKSIDFNGINTSLGKSGSSY- 123 (338)
Q Consensus 53 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ad~~~l~~~l~~~~~~--~~~~------~~s~d~~g~~~vig~~~~~~- 123 (338)
..++.||++.+.+.+.+ . .++.+++.+|.||+||+++.+.++. |++. +++.|+.+..+++|...+|.
T Consensus 6 ~~s~~eA~~~i~~~~~~-~---~~e~v~l~~A~GrvLAedv~A~~~~P~f~~SamDGyAv~~~D~~~~l~v~~~i~aG~~ 81 (419)
T 2fts_A 6 LTSMDKAFITVLEMTPV-L---GTEIINYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDRFIIGESQAGEQ 81 (419)
T ss_dssp EEEHHHHHHHHHHHSCC-C---CEEEEEGGGCTTCBBSSCEECSSCBSSSCEESSSEEEECGGGCSCEEEEEEECCTTSC
T ss_pred CCCHHHHHHHHHhcCCC-C---CcEEEEHHHhCCCeeeeeeEeCCCCCCCCCcccceEEEeeccCCcceEEEEEEeCCCC
Confidence 46788998888876654 1 2678999999999999999999984 6644 58889988889999998874
Q ss_pred --CCCCCCcEEEe-eCCCCCCCCcEEE------E---------------cCCCCCCCCccccc--ccCCCcccCCCceeC
Q psy7342 124 --GSDGCTSAFEV-GGEPWPKKKKFVV------K---------------HSVLPPHINLAKPE--WTEKSQQYSTTQVIR 177 (338)
Q Consensus 124 --~~~~~g~av~I-TGa~lP~gaDaVV------i---------------~~~~~~g~nVr~~G--i~~Ge~ll~~G~~l~ 177 (338)
.+..+|+|+|| ||+++|+|+|+|| . ..++++|+|||++| +++||+|+++|++|+
T Consensus 82 ~~~~l~~g~avrI~TGa~~P~gaDaVv~~E~~~~~~~~~~~~~~~~v~i~~~~~~g~nIr~~Gedi~~G~~ll~~G~~l~ 161 (419)
T 2fts_A 82 PTQTVMPGQVMRVTTGAPIPCGADAVVQVEDTELIRESDDGTEELEVRILVQARPGQDIRPIGHDIKRGECVLAKGTHMG 161 (419)
T ss_dssp CCCCCCTTEEEEECTTCBCCTTCCEEEEGGGEEEEEESTTSSCEEEEEECSCCCTTTTEECTTSSBCTTCEEECTTCBCC
T ss_pred CCCccCCCeEEEEeCCCCCCCCCcEEEEEEeEEeccccccCCCCCeEEEecCCCCCCCCccCCcCcCCCCEEECCCCCcC
Confidence 35678999999 9999999999998 1 23688999999999 999999999999999
Q ss_pred hhcHHHHHhhCCCceeEeecCceEEEEecCCCcc-------CCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHH
Q psy7342 178 PDTNHAQRCSTSMKYWELVRSTCHLLALVSDRCF-------NKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKD 250 (338)
Q Consensus 178 p~~i~~lLas~Gi~~v~V~~~prVaIIstGdEl~-------~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~ 250 (338)
|.+| ++||++|+.+|+||++|||+||+||||++ +|+++|+|+++|.++|++ +|+++..+++++||++.|++
T Consensus 162 p~~i-glLas~G~~~v~V~~~prv~IistGdEl~~~g~~~~~G~i~dsN~~~L~~~l~~-~G~~v~~~~iv~Dd~~~i~~ 239 (419)
T 2fts_A 162 PSEI-GLLATVGVTEVEVNKFPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQE-HGYPTINLGIVGDNPDDLLN 239 (419)
T ss_dssp HHHH-HHHHHHTCCEEEEECCCCEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHT-TTCCEEEEEEECSSHHHHHH
T ss_pred HHHH-HHHHhCCCCeeEecCCCEEEEEEechhccCCCCCCCCCcEecCchHHHHHHHHH-CCCEEEEEeecCCCHHHHHH
Confidence 9999 99999999999999999999999999998 799999999999999999 99999999999999999999
Q ss_pred HHHHHHhCCCCcEEEEeCCccCCCCCChHHHH-Hhccc-cccCChHHHHHHhcCCCC-Cccc--c-----ceeEEEecCc
Q psy7342 251 KLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAM-NHLID-KKVPCIEHIIQTEGLKVT-PLAM--L-----SRFKGNCPKK 320 (338)
Q Consensus 251 aL~~a~~~~~~DlVITTGGts~G~~D~t~eal-~~l~~-~~lpG~~e~~~~~s~~~~-p~A~--l-----sR~vaGi~g~ 320 (338)
+|++++++ +|+||||||+|+|++|+|++++ +.++. ..+ +...++++ |..+ . .+.++|+|||
T Consensus 240 ~l~~a~~~--~DlVittGG~s~g~~D~t~~al~~~lg~~~~f-------~~v~~~PG~p~~~g~~~~~~~~~~v~~LPG~ 310 (419)
T 2fts_A 240 ALNEGISR--ADVIITSGGVSMGEKDYLKQVLDIDLHAQIHF-------GRVFMKPGLPTTFATLDIDGVRKIIFALPGN 310 (419)
T ss_dssp HHHHHHHH--CSEEEEESCCSSSCCHHHHHHHHTTTCCEEEE-------SEEECBSCTTCEEEEEEETTEEEEEEEECSS
T ss_pred HHHHHHhc--CCEEEEcCCCcCCCcccHHHHHHHHcCCceEE-------eEEecCCCCceEEEEEeecCCCeEEEECCCC
Confidence 99999987 8999999999999999999999 56642 333 33445554 3322 2 3689999999
Q ss_pred hHH--HHHHHhhhcccccc
Q psy7342 321 WVK--LIRRQNVIPWLGLW 337 (338)
Q Consensus 321 ~v~--~a~~~~IlP~l~~~ 337 (338)
++. .+|+.+++|+|.++
T Consensus 311 P~sa~~~~~~~v~P~L~~~ 329 (419)
T 2fts_A 311 PVSAVVTCNLFVVPALRKM 329 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 775 77889999999764
No 3
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=100.00 E-value=5.8e-48 Score=384.34 Aligned_cols=271 Identities=15% Similarity=0.106 Sum_probs=234.0
Q ss_pred chhhhHHHHHhhhhhcccCCCCCCCCCCccccchhhhhhhhcCCCCC--CCcc------cccccCC--cceeEeeeccCC
Q psy7342 53 NAACIDERKELDNKCEIAHAPNKIMPNTSEKADTEKLNEKLNEGIND--HDRH------TKSIDFN--GINTSLGKSGSS 122 (338)
Q Consensus 53 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ad~~~l~~~l~~~~~~--~~~~------~~s~d~~--g~~~vig~~~~~ 122 (338)
..++.||++.+++.+.+ .. .++.+++.+|.||+||+++.+..+. |++. +++.|+. ...+++|+..+|
T Consensus 7 ~~s~~eA~~~i~~~~~~-~~--~~e~v~l~~A~GrvLAedv~a~~~~P~f~~SamDGyAv~~~D~~~~~~l~v~~~i~aG 83 (411)
T 1g8l_A 7 LMSLDTALNEMLSRVTP-LT--AQETLPLVQCFGRILASDVVSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAG 83 (411)
T ss_dssp CBCHHHHHHHHHHHCCC-CC--CEEEEEGGGCTTCBBSSCEECSSCBSSSCEESSSEEEECHHHHHHCSCBCEEEEEBTT
T ss_pred CcCHHHHHHHHHhhCcC-cC--CcEEEEHHHhCCCeeeeeeEcCCCCCCCcccCCCceEEeHHHcCCCceEEEEEEEECC
Confidence 46788998888877665 21 2578899999999999999999873 6644 4777764 457778888877
Q ss_pred C---CCCCCCcEEEe-eCCCCCCCCcEEE-------------EcCCCCCCCCccccc--ccCCCcccCCCceeChhcHHH
Q psy7342 123 Y---GSDGCTSAFEV-GGEPWPKKKKFVV-------------KHSVLPPHINLAKPE--WTEKSQQYSTTQVIRPDTNHA 183 (338)
Q Consensus 123 ~---~~~~~g~av~I-TGa~lP~gaDaVV-------------i~~~~~~g~nVr~~G--i~~Ge~ll~~G~~l~p~~i~~ 183 (338)
. .+..+|+|++| ||+++|+|+|+|| +..++++|+|||++| +++||+|+++|++|+|.+| +
T Consensus 84 ~~~~~~l~~g~a~rI~TGa~~P~gadaVV~~E~~~~~~~~v~i~~~~~~g~~ir~~Gedv~~G~~vl~~G~~l~p~~i-~ 162 (411)
T 1g8l_A 84 QPYHGEWPAGTCIRIMTGAPVPEGCEAVVMQEQTEQMDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAEL-P 162 (411)
T ss_dssp BCCCSCCCTTCEEEECTTCBCCTTCCEEEEGGGEEEETTEEEECSCCCTTTTEECTTSSBCTTSEEECTTCBCCTTTH-H
T ss_pred CCCCcccCCCcEEEEccCCCCCCCccEEEEEeeEEecCCEEEEeCCCCCCCCEecCCcEecCCCEEEcCCcEECHHHH-H
Confidence 4 35678999999 9999999999998 678899999999999 9999999999999999999 9
Q ss_pred HHhhCCCceeEeecCceEEEEecCCCcc-------CCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHH
Q psy7342 184 QRCSTSMKYWELVRSTCHLLALVSDRCF-------NKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWV 256 (338)
Q Consensus 184 lLas~Gi~~v~V~~~prVaIIstGdEl~-------~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~ 256 (338)
+||++|+.+|+||++|||+||+||||++ +|+++|+|+++|.++|++ +|+++..+++++||++.|+++|++++
T Consensus 163 llas~G~~~V~V~~~~rv~iistGdEl~~~g~~~~~G~i~dsn~~~L~~~l~~-~G~~v~~~~iv~Dd~~~i~~al~~a~ 241 (411)
T 1g8l_A 163 VIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQ-LGCEVINLGIIRDDPHALRAAFIEAD 241 (411)
T ss_dssp HHHHTTCCEEEEECCCEEEEEEECTTEECTTSCCCSSCEECCHHHHHHHHHHH-TTCEEEEEEEECSCHHHHHHHHHHHH
T ss_pred HHHhCCCceEEecCCCEEEEEEcCccccCCCCCCCCCcEEcCchHHHHHHHHH-CCCEEEEEEEeCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999998 899999999999999999 99999999999999999999999999
Q ss_pred hCCCCcEEEEeCCccCCCCCChHHHHHhccccccCChHHHHHHhcCCCC-Cccc---cceeEEEecCchHH--HHHHHhh
Q psy7342 257 DQSKVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVT-PLAM---LSRFKGNCPKKWVK--LIRRQNV 330 (338)
Q Consensus 257 ~~~~~DlVITTGGts~G~~D~t~eal~~l~~~~lpG~~e~~~~~s~~~~-p~A~---lsR~vaGi~g~~v~--~a~~~~I 330 (338)
++ +|+||||||+|+|++|+|+++++++++..+ +..+++++ |.++ -.+.++|+|||++. .+|+.++
T Consensus 242 ~~--~DlvittGG~s~g~~D~t~~al~~~G~i~f-------~~va~~PG~p~~~g~~~~~~v~~LPGnP~sa~~~~~~~v 312 (411)
T 1g8l_A 242 SQ--ADVVISSGGVSVGEADYTKTILEELGEIAF-------WKLAIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLV 312 (411)
T ss_dssp HH--CSEEEECSSSCSSSCSHHHHHHHHHSEEEE-------EEBSEESCCEEEEEECSSSEEEECCSSHHHHHHHHHHTH
T ss_pred hc--CCEEEECCCCCCCCcccHHHHHHhcCcEEE-------EEEEeeCCCcEEEEEECCEEEEEcCCChHHHHHHHHHHH
Confidence 86 899999999999999999999999864333 34456665 3322 14789999999774 7788999
Q ss_pred hcccccc
Q psy7342 331 IPWLGLW 337 (338)
Q Consensus 331 lP~l~~~ 337 (338)
+|+|+++
T Consensus 313 ~P~L~~l 319 (411)
T 1g8l_A 313 QPLLAKL 319 (411)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 4
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=100.00 E-value=4.4e-47 Score=376.43 Aligned_cols=271 Identities=15% Similarity=0.108 Sum_probs=223.7
Q ss_pred CcccchhhhHHHHHhhhhhcccCCCCCCCCCCccccchhhhhhhhcCCCCC--CCcc------cccccCCc-------ce
Q psy7342 49 NFTQNAACIDERKELDNKCEIAHAPNKIMPNTSEKADTEKLNEKLNEGIND--HDRH------TKSIDFNG-------IN 113 (338)
Q Consensus 49 ~f~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ad~~~l~~~l~~~~~~--~~~~------~~s~d~~g-------~~ 113 (338)
.|....+++||++.+++.+.+ ...++.+++.+|.||+||+++.+.++. |++. +++.|++| ..
T Consensus 3 ~~~~~~s~~eA~~~i~~~~~~---~~~~e~v~l~~A~GrvLA~dv~a~~~~P~f~~SamDGyAv~~~d~~~a~~~~p~~l 79 (396)
T 1wu2_A 3 EFKKLVPYREALKLLLDDINE---IEDTEKVPLREAVGRVLAEDIVTEFDIPPFDRAAVDGYAIRAEDTFQAREYNPIEL 79 (396)
T ss_dssp ---CCBCHHHHHHHHHHHCCC---CCCEEEEEGGGCTTCBBSSCEECSSCBSSSCEESSSEEEECGGGGTTCBTTBCEEE
T ss_pred cccCCCCHHHHHHHHHhhccC---cCCceEEEHHHhCCCeeeeeEEcCCCCCCCcccccCcEEEehhhccccccCCCeEE
Confidence 577788999999988877654 113678999999999999999999873 7773 58889864 36
Q ss_pred eEeeeccCCC---CCCCCCcEEEe-eCCCCCCCCcEEE-------------EcCCCCCCCCccccc--ccCCCcccCCCc
Q psy7342 114 TSLGKSGSSY---GSDGCTSAFEV-GGEPWPKKKKFVV-------------KHSVLPPHINLAKPE--WTEKSQQYSTTQ 174 (338)
Q Consensus 114 ~vig~~~~~~---~~~~~g~av~I-TGa~lP~gaDaVV-------------i~~~~~~g~nVr~~G--i~~Ge~ll~~G~ 174 (338)
+++|+..+|. .+..+|+|++| ||+++|+|+|+|| +..++++|+|||++| +++||+|+++|+
T Consensus 80 ~v~~~i~aG~~~~~~l~~g~a~~I~TGa~~P~GadaVV~~E~~~~~~~~v~i~~~~~~g~nir~~Gedv~~G~~ll~~G~ 159 (396)
T 1wu2_A 80 TVIEEVPAGNVAKEEVTTGKAIKVLTGTRIPKGANAVIMQEMVKREGDKIYVLRPVAPGQNIAFTGEDVKKGEVVLRKGT 159 (396)
T ss_dssp EEEEECCTTCCCSSCCCTTEEEEECTTCBCCTTCCEEEEGGGSEEETTEEEECSCCCTTTTEECTTSSBCTTCEEECTTC
T ss_pred EEeeEEECCCCCCCccCCCcEEEEccCCCCCCCCCEEEEEEEEEecCCEEEEeCCCCCCCCcccCCcEEcCCCEeecCCc
Confidence 6789888874 35678999999 9999999999998 678899999999999 999999999999
Q ss_pred eeChhcHHHHHhhCCCceeEeecCceEEEEecCCCcc---------CCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCH
Q psy7342 175 VIRPDTNHAQRCSTSMKYWELVRSTCHLLALVSDRCF---------NKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEM 245 (338)
Q Consensus 175 ~l~p~~i~~lLas~Gi~~v~V~~~prVaIIstGdEl~---------~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~ 245 (338)
+|+|.+| ++|++.|+.+|+||++|||+||+||||++ +|+++|+|+++|.++|++ +|+++..+++++||+
T Consensus 160 ~l~p~~i-~llas~G~~~V~V~~~prv~IistGdEl~~~~g~~~~~~G~i~Dsn~~~L~~~l~~-~G~~v~~~~iv~Dd~ 237 (396)
T 1wu2_A 160 ILRPQDV-AMLKALGIKKVPVKVKPKVGIIITGSELIEEPSEEGFKEGKIVETNSIMLQGLVEK-FFGEPILYGVLPDDE 237 (396)
T ss_dssp BCCHHHH-HHHHHTTCSEEEEECCCEEEEEEECTTEESSCCHHHHHTTCEECCHHHHHHHHHHH-TTCEEEEEEEECSCH
T ss_pred EEcHHHH-HHHHhCCCceeeecCCCEEEEEEcCcccccCCCCcccCCCcEecchHHHHHHHHHH-CCCEEEEEEEeCCCH
Confidence 9999999 99999999999999999999999999998 499999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHHHhccccccCChHHHHHHhcCCCCCccccceeEEEecCchHH--
Q psy7342 246 EEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSRFKGNCPKKWVK-- 323 (338)
Q Consensus 246 e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal~~l~~~~lpG~~e~~~~~s~~~~p~A~lsR~vaGi~g~~v~-- 323 (338)
+.|+++|++++++ +|+||||||+|+|++|+ ++++++. .|+...++++...++.+.++|+|||++.
T Consensus 238 ~~i~~~l~~a~~~--~DlvittGG~s~g~~D~----l~~~G~i-------~f~~va~~PG~p~~~g~~v~~LPG~P~sa~ 304 (396)
T 1wu2_A 238 SIIKETLEKAKNE--CDIVLITGGSAFGDKDY----AHKFVNL-------LFHGTTIKPGRPFGYGEKVFIMSGYPVSVF 304 (396)
T ss_dssp HHHTTHHHHHHHC--SEEEECC--------CC----STTTCCC-------SEESBSEESCTTCEEETTEEECCSSHHHHH
T ss_pred HHHHHHHHHHhhC--CCEEEEeCCCCCChhhH----HhhcCCE-------EEeeecccCCCceEccCeEEECCCCHHHHH
Confidence 9999999999987 89999999999999999 4555422 2334556665433334899999999775
Q ss_pred HHHHHhhhcccccc
Q psy7342 324 LIRRQNVIPWLGLW 337 (338)
Q Consensus 324 ~a~~~~IlP~l~~~ 337 (338)
.+|+.++.|+|+++
T Consensus 305 ~~~~~~v~P~L~~l 318 (396)
T 1wu2_A 305 AQFNLFVKHALAKM 318 (396)
T ss_dssp HHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 77888999998754
No 5
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=99.97 E-value=1.2e-31 Score=241.02 Aligned_cols=153 Identities=27% Similarity=0.314 Sum_probs=124.6
Q ss_pred hcHHHHHhhCCCceeEeecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhC
Q psy7342 179 DTNHAQRCSTSMKYWELVRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQ 258 (338)
Q Consensus 179 ~~i~~lLas~Gi~~v~V~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~ 258 (338)
.++ ++|+..+.++ +++++|||+||+||||+++|+ +|+|+++|.++|++ +|+++..+.++|||++.|+++|++++++
T Consensus 13 ~~~-g~~~~~~~~~-~~~~~~rvaIistGdEl~~G~-~Dsn~~~L~~~L~~-~G~~v~~~~iv~Dd~~~I~~al~~a~~~ 88 (185)
T 3rfq_A 13 SDL-GYSVAPMEQG-AELVVGRALVVVVDDRTAHGD-EDHSGPLVTELLTE-AGFVVDGVVAVEADEVDIRNALNTAVIG 88 (185)
T ss_dssp ------------------CCEEEEEEEECHHHHTTC-CCSHHHHHHHHHHH-TTEEEEEEEEECSCHHHHHHHHHHHHHT
T ss_pred hhh-hhhhcccccc-cCCCCCEEEEEEECcccCCCC-cCcHHHHHHHHHHH-CCCEEEEEEEeCCCHHHHHHHHHHHHhC
Confidence 567 8899888888 789999999999999999999 99999999999999 9999999999999999999999999843
Q ss_pred CCCcEEEEeCCccCCCCCChHHHHHhccccccCChHHHHHHhcCCC-CCccccce---------eEEEecCchHH--HHH
Q psy7342 259 SKVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKV-TPLAMLSR---------FKGNCPKKWVK--LIR 326 (338)
Q Consensus 259 ~~~DlVITTGGts~G~~D~t~eal~~l~~~~lpG~~e~~~~~s~~~-~p~A~lsR---------~vaGi~g~~v~--~a~ 326 (338)
++|+||||||+|+|++|+|++++++++++.+||+++.|+..++++ +|.++++| .++|+|||++. .++
T Consensus 89 -~~DlVIttGGts~g~~D~t~eal~~l~~~~l~G~~~~f~~v~~kpG~p~a~lsR~~~G~~~~~~V~~LPGnP~aa~~~~ 167 (185)
T 3rfq_A 89 -GVDLVVSVGGTGVTPRDVTPESTREILDREILGIAEAIRASGLSAGIIDAGLSRGLAGVSGSTLVVNLAGSRYAVRDGM 167 (185)
T ss_dssp -TCSEEEEESCCSSSTTCCHHHHHHTTCSEECHHHHHHHHHHHHHTTCHHHHTCCCCEEEETTEEEEEECSSHHHHHHHH
T ss_pred -CCCEEEECCCCCCCCcccHHHHHHHHhcccCccHHHHHHHHhcCCCCCceeeeehhhcccCCeEEEECCCCHHHHHHHH
Confidence 389999999999999999999999999999999999999999998 58887766 56677888664 666
Q ss_pred HHhhhcccccc
Q psy7342 327 RQNVIPWLGLW 337 (338)
Q Consensus 327 ~~~IlP~l~~~ 337 (338)
+ +++|+|.++
T Consensus 168 ~-~l~P~L~~~ 177 (185)
T 3rfq_A 168 A-TLNPLAAHI 177 (185)
T ss_dssp H-HHHHHHHHH
T ss_pred H-HHHHHHHHH
Confidence 5 579998764
No 6
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=99.97 E-value=5.7e-31 Score=231.97 Aligned_cols=138 Identities=27% Similarity=0.392 Sum_probs=121.8
Q ss_pred ecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCC
Q psy7342 196 VRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPR 275 (338)
Q Consensus 196 ~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~ 275 (338)
.++|||+||+||||+++|+++|+|+++|+++|++ +|+++..+.++||| +.|+++|++++++ ++|+||||||+|+|++
T Consensus 5 ~~~~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~-~G~~v~~~~iv~Dd-~~i~~al~~a~~~-~~DlVittGG~s~g~~ 81 (164)
T 3pzy_A 5 MTTRSARVIIASTRASSGEYEDRCGPIITEWLAQ-QGFSSAQPEVVADG-SPVGEALRKAIDD-DVDVILTSGGTGIAPT 81 (164)
T ss_dssp --CCEEEEEEECHHHHC----CCHHHHHHHHHHH-TTCEECCCEEECSS-HHHHHHHHHHHHT-TCSEEEEESCCSSSTT
T ss_pred CCCCEEEEEEECCCCCCCceeeHHHHHHHHHHHH-CCCEEEEEEEeCCH-HHHHHHHHHHHhC-CCCEEEECCCCCCCCC
Confidence 4689999999999999999999999999999999 99999999999999 9999999999962 3899999999999999
Q ss_pred CChHHHHHhccccccCChHHHHHHhcCCCCCccccce---------eEEEecCchH--HHHHHHhhhcccccc
Q psy7342 276 DVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR---------FKGNCPKKWV--KLIRRQNVIPWLGLW 337 (338)
Q Consensus 276 D~t~eal~~l~~~~lpG~~e~~~~~s~~~~p~A~lsR---------~vaGi~g~~v--~~a~~~~IlP~l~~~ 337 (338)
|+|++++++++++.+||+.+.|+..+++++|.++++| .++|+|||++ ..+++ +++|.|.++
T Consensus 82 D~t~eal~~~~~~~lpG~~~~~~~~~~~~~p~a~lsr~~~G~~~~~~v~~LPG~P~aa~~~~~-~v~P~l~~~ 153 (164)
T 3pzy_A 82 DSTPDQTVAVVDYLIPGLAEAIRRSGLPKVPTSVLSRGVCGVAGQTLIVNLPGSPGGVRDGLG-VLAGVLDHA 153 (164)
T ss_dssp CCHHHHHHTTCSEECHHHHHHHHHTTTTTCGGGGGCCCCEEEETTEEEEEECSSHHHHHHHHH-HHHTTHHHH
T ss_pred ccHHHHHHHHhcccCccHHHHHHhhccCCCCccccchhhhcccCCEEEEECCCCHHHHHHHHH-HHHHHHHHH
Confidence 9999999999999999999999999999998887754 6778889866 47777 999998764
No 7
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=99.97 E-value=5.6e-31 Score=237.03 Aligned_cols=152 Identities=36% Similarity=0.500 Sum_probs=121.7
Q ss_pred HhhCCCceeEeecCceEEEEecCCCccCCeeecCcHHHHHHHHHcc--cCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCc
Q psy7342 185 RCSTSMKYWELVRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQED--FQHAHILKTCVPDEMEEIKDKLKYWVDQSKVD 262 (338)
Q Consensus 185 Las~Gi~~v~V~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~--~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~D 262 (338)
+|++|+.+++|+++|||+||+||||++.|+++|+|+++|+++|++. +|+++..+.++|||++.|+++|++++++.++|
T Consensus 1 ~a~~g~~~v~v~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~D 80 (189)
T 1jlj_A 1 MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELN 80 (189)
T ss_dssp ------------CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCS
T ss_pred CCcCCcccccccCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCC
Confidence 5889999999999999999999999999999999999999999973 69999999999999999999999999732389
Q ss_pred EEEEeCCccCCCCCChHHHHHhccccccCChHHHHHHhcCCCCCccccce---------eEEEecCchHH--HHHHHhhh
Q psy7342 263 LIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR---------FKGNCPKKWVK--LIRRQNVI 331 (338)
Q Consensus 263 lVITTGGts~G~~D~t~eal~~l~~~~lpG~~e~~~~~s~~~~p~A~lsR---------~vaGi~g~~v~--~a~~~~Il 331 (338)
+||||||+|+|++|+|++++++++++.+||+++.|+..++...|.+.++| .++++||++.. .+|+ +++
T Consensus 81 lVIttGGtg~g~~D~t~eal~~~~~~~lpg~~~~~~~~~~~~~Pg~~lsr~~~G~~~~~~v~~LPG~P~s~~~~~~-~v~ 159 (189)
T 1jlj_A 81 LILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSLNVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQ-FIL 159 (189)
T ss_dssp EEEEESCCSSSTTCCHHHHHHHHCSEECHHHHHHHHHHHHHHCGGGGGCCCCEEEETTEEEEEECSSHHHHHHHHH-HHG
T ss_pred EEEEcCCCCCCCcccHHHHHHHHhccccccchhhheecccccCCCCccccceEEEECCeEEEECCCCHHHHHHHHH-HHH
Confidence 99999999999999999999999999999999888776655445544444 45558999774 5566 999
Q ss_pred cccccc
Q psy7342 332 PWLGLW 337 (338)
Q Consensus 332 P~l~~~ 337 (338)
|+|.++
T Consensus 160 P~L~~~ 165 (189)
T 1jlj_A 160 PALPHA 165 (189)
T ss_dssp GGHHHH
T ss_pred HHHHHH
Confidence 998754
No 8
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=99.97 E-value=1.1e-30 Score=232.86 Aligned_cols=143 Identities=25% Similarity=0.357 Sum_probs=129.6
Q ss_pred EeecCceEEEEecCCCcc----C-CeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 194 ELVRSTCHLLALVSDRCF----N-KESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 194 ~V~~~prVaIIstGdEl~----~-G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
.+++++||+||+||||++ + |+++|+|+++|+++|++ +|+++..+.++|||++.|+++|++++++.++|+|||||
T Consensus 11 ~~~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~-~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittG 89 (178)
T 2pjk_A 11 NAPKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIE-NGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp --CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHH-TTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred cCCCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHH-CCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 468999999999999988 7 99999999999999999 99999999999999999999999999764589999999
Q ss_pred CccCCCCCChHHHHHhccccccCChHHHHHHhcCCC---CCccccce---------eEEEecCchH--HHHHHHhhhccc
Q psy7342 269 GTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKV---TPLAMLSR---------FKGNCPKKWV--KLIRRQNVIPWL 334 (338)
Q Consensus 269 Gts~G~~D~t~eal~~l~~~~lpG~~e~~~~~s~~~---~p~A~lsR---------~vaGi~g~~v--~~a~~~~IlP~l 334 (338)
|+|+|++|+|++++++++++.+||+.+.|+.+++++ ++.++++| .++|+|||++ ..+++.+++|.|
T Consensus 90 G~s~g~~D~t~eal~~~~~~~l~G~~~~~~~v~~~p~~~G~pa~lsr~~~G~~~~~~v~~LPG~P~aa~~~~~~~v~P~l 169 (178)
T 2pjk_A 90 GTGYSPTDITVETIRKLFDREIEGFSDVFRLVSFNDPEVKAAAYLTKASAGIIGKKIVYLLPGSPDAVKLALKELILPEV 169 (178)
T ss_dssp CCSSSTTCCHHHHHGGGCSEECHHHHHHHHHHHHTSTTTGGGGGGCCCEEEEETTEEEEEECSCHHHHHHHHHHTHHHHH
T ss_pred CCCCCCCcchHHHHHHHhcccCcchHHHhheeeccCCCCCCcchhheeEEEEECCEEEEECCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 88877766 5667788866 477888999998
Q ss_pred ccc
Q psy7342 335 GLW 337 (338)
Q Consensus 335 ~~~ 337 (338)
.++
T Consensus 170 ~~~ 172 (178)
T 2pjk_A 170 GHL 172 (178)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 9
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=99.96 E-value=3e-29 Score=221.35 Aligned_cols=142 Identities=30% Similarity=0.385 Sum_probs=125.3
Q ss_pred eEeecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccC
Q psy7342 193 WELVRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGM 272 (338)
Q Consensus 193 v~V~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~ 272 (338)
.+||++|||+||+||||+ |+++|+|+++|+++|++ +|+++..+.+++||++.|+++|++++++.++|+||||||+|+
T Consensus 8 ~~v~~~~rv~Ii~tGdEl--g~i~Dsn~~~l~~~L~~-~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~ 84 (169)
T 1y5e_A 8 KQAPKEVRCKIVTISDTR--TEETDKSGQLLHELLKE-AGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGI 84 (169)
T ss_dssp ----CCCEEEEEEECSSC--CTTTCHHHHHHHHHHHH-HTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSS
T ss_pred cccccCCEEEEEEEcCcc--CeeccChHHHHHHHHHH-CCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCC
Confidence 478999999999999999 99999999999999999 999999999999999999999999998223899999999999
Q ss_pred CCCCChHHHHHhccccccCChHHHHHHhcC--CCCCccccc---------eeEEEecCchH--HHHHHHhhhcccccc
Q psy7342 273 SPRDVTPEAMNHLIDKKVPCIEHIIQTEGL--KVTPLAMLS---------RFKGNCPKKWV--KLIRRQNVIPWLGLW 337 (338)
Q Consensus 273 G~~D~t~eal~~l~~~~lpG~~e~~~~~s~--~~~p~A~ls---------R~vaGi~g~~v--~~a~~~~IlP~l~~~ 337 (338)
|++|+|++++++++++.+||+++.|+.+++ ++++.++++ +.++++||++. ..+++.+++|+|.++
T Consensus 85 g~~D~t~ea~~~~~~~~l~g~~~~~~~~~~~~~pG~~~~~~r~~aG~~~~~~v~~LPG~P~~~~~~~~~~v~p~L~~~ 162 (169)
T 1y5e_A 85 TKRDVTIEAVSALLDKEIVGFGELFRMISYLEDIGSSAMLSRAIGGTIGRKVVFSMPGSSGAVRLAMNKLILPELGHI 162 (169)
T ss_dssp STTCCHHHHHHTTCSEECHHHHHHHHHHHHHHSSGGGGGGCCCEEEEETTEEEEEECSSHHHHHHHHHHTHHHHHHHH
T ss_pred CCCCCcHHHHHHHcCCCCCChHHHHhhhhcccCCCcceecccceeEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988 777665554 46788899866 477888999999764
No 10
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=99.96 E-value=4.9e-29 Score=219.64 Aligned_cols=137 Identities=28% Similarity=0.356 Sum_probs=116.3
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHH----HHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCC
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQL----LQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMS 273 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~l----L~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G 273 (338)
++|++||+||||+..|+++|+|+++|+++ |++ +|+++..+.++|||++.|+++|++++++ ++|+||||||+|+|
T Consensus 5 ~~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~-~G~~v~~~~iv~Dd~~~I~~~l~~a~~~-~~DlVittGG~g~~ 82 (167)
T 2g2c_A 5 HIKSAIIVVSDRISTGTRENKALPLLQRLMSDELQD-YSYELISEVVVPEGYDTVVEAIATALKQ-GARFIITAGGTGIR 82 (167)
T ss_dssp EEEEEEEEECHHHHHTSSCCCHHHHHHHHHCC-----CEEEEEEEEEECSSHHHHHHHHHHHHHT-TCSEEEEESCCSSS
T ss_pred ccEEEEEEECCcccCCceeccHHHHHHHhHHhHHHH-CCCEEeEEEEeCCCHHHHHHHHHHHHhC-CCCEEEECCCCCCC
Confidence 37999999999999999999999999999 999 9999999999999999999999999984 28999999999999
Q ss_pred CCCChHHHHHhccccccCChHHHHHHhcCCCCCccccc-------------eeEEEecCchH--HHHHHHhhhcccccc
Q psy7342 274 PRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLS-------------RFKGNCPKKWV--KLIRRQNVIPWLGLW 337 (338)
Q Consensus 274 ~~D~t~eal~~l~~~~lpG~~e~~~~~s~~~~p~A~ls-------------R~vaGi~g~~v--~~a~~~~IlP~l~~~ 337 (338)
++|+|+|++++++++.+||+++.|+..+++++|+++++ +.++++||++. ..+|+ +++|+|+++
T Consensus 83 ~~D~t~ea~~~~~~~~l~g~~~~~~~~~~~~~p~a~l~r~~aG~~~~~~~~~~v~~LPG~P~~~~~~~~-~v~P~L~~~ 160 (167)
T 2g2c_A 83 AKNQTPEATASFIHTRCEGLEQQILIHGSTHTHLAGLSRGIVGVTGRDDHAALIVNAPSSSGGITDTWA-VISPVIPNI 160 (167)
T ss_dssp TTCCHHHHHHTTCSEECHHHHHHHHHHC-------CCCCCCEEESCSSTTCCEEEEECSSHHHHHHHHH-HHGGGHHHH
T ss_pred CCcChHHHHHHHhCCcCccHHHHHHHhcCCcCCceeeeccccceecCCCCCEEEEECCCCHHHHHHHHH-HHHHHHHHH
Confidence 99999999999999999999999999999888887653 45778888866 47777 999999764
No 11
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=99.95 E-value=1.3e-28 Score=222.77 Aligned_cols=140 Identities=28% Similarity=0.336 Sum_probs=119.5
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCE--EEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHA--HILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~--v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
.++||+||+||||+.+|+++|+|+++|+++|++ +|++ +..+.++|||++.|+++|++++++.++|+||||||+|+|+
T Consensus 2 ~~~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~-~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGtg~g~ 80 (195)
T 1di6_A 2 ATLRIGLVSISDRASSGVYQDKGIPALEEWLTS-ALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPAR 80 (195)
T ss_dssp CCEEEEEEEEECC-------CCHHHHHHHHHHH-HBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCCSSST
T ss_pred CCCEEEEEEECCCCCCCeEEchHHHHHHHHHHH-cCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCC
Confidence 468999999999999999999999999999999 9998 7899999999999999999999843489999999999999
Q ss_pred CCChHHHHHhccccccCChHHHHHHhcCCCCCccccce---------eEEEecCchH--HHHHHHh-----------hhc
Q psy7342 275 RDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR---------FKGNCPKKWV--KLIRRQN-----------VIP 332 (338)
Q Consensus 275 ~D~t~eal~~l~~~~lpG~~e~~~~~s~~~~p~A~lsR---------~vaGi~g~~v--~~a~~~~-----------IlP 332 (338)
+|+|+|++++++++.+||++++|+..+++.+|.++++| .++++||++. ..+++.+ |+|
T Consensus 81 ~D~T~ea~~~~~~~~l~g~~~~~~~~~~~~~p~a~lsr~~aG~~~~~~v~~LPG~P~a~~~~~~~~~~~~~~~~~~~v~p 160 (195)
T 1di6_A 81 RDVTPDATLAVADREMPGFGEQMRQISLHFVPTAILSRQVGVIRKQALILNLPGQPKSIKETLEGVKDAEGNVVVHGIFA 160 (195)
T ss_dssp TCCHHHHHHHTCSEECHHHHHHHHHHHHTTCGGGGGCCCCEEEETTEEEEEECSSHHHHHHHHHEEECTTSCEEEECGGG
T ss_pred CccHHHHHHHHhcccCccHHHHHHHhcCCCCCcceeccceEEEECCEEEEECCCCHHHHHHHHHHHHhhcccchhhhHHH
Confidence 99999999999999999999999999999888888765 4666778765 4777777 899
Q ss_pred ccccc
Q psy7342 333 WLGLW 337 (338)
Q Consensus 333 ~l~~~ 337 (338)
.|.++
T Consensus 161 ~l~~~ 165 (195)
T 1di6_A 161 SVPYC 165 (195)
T ss_dssp GHHHH
T ss_pred HHHHH
Confidence 88764
No 12
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=99.95 E-value=1.5e-27 Score=211.30 Aligned_cols=139 Identities=23% Similarity=0.331 Sum_probs=125.6
Q ss_pred ecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCC
Q psy7342 196 VRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPR 275 (338)
Q Consensus 196 ~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~ 275 (338)
|++|+|+||+|||| .|+++|+|+++|+++|++ +|+++..+.++|||++.|+++|++++++.++|+||||||+|+|++
T Consensus 8 ~~~~~v~Ii~tGdE--~g~i~D~n~~~l~~~L~~-~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~~~~ 84 (172)
T 1mkz_A 8 FIPTRIAILTVSNR--RGEEDDTSGHYLRDSAQE-AGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEG 84 (172)
T ss_dssp CCCCEEEEEEECSS--CCGGGCHHHHHHHHHHHH-TTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSSSTT
T ss_pred CCCCEEEEEEEeCC--CCcccCccHHHHHHHHHH-CCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCCCC
Confidence 78999999999999 499999999999999999 999999999999999999999999998534899999999999999
Q ss_pred CChHHHHHhccccccCChHHHHHHhcCCC-CCccccc---------eeEEEecCchH--HHHHHHhhhcccccc
Q psy7342 276 DVTPEAMNHLIDKKVPCIEHIIQTEGLKV-TPLAMLS---------RFKGNCPKKWV--KLIRRQNVIPWLGLW 337 (338)
Q Consensus 276 D~t~eal~~l~~~~lpG~~e~~~~~s~~~-~p~A~ls---------R~vaGi~g~~v--~~a~~~~IlP~l~~~ 337 (338)
|+|++++++++++.+||+++.|+.+++++ ++.++++ +.++++||++. ..+++.+++|+|..+
T Consensus 85 D~t~ea~~~~~~~~l~g~~~~~~~i~~~p~G~~~~~a~~~~G~~~~~~v~~LPG~P~~~~~~~~~~v~p~L~~~ 158 (172)
T 1mkz_A 85 DQAPEALLPLFDREVEGFGEVFRMLSFEEIGTSTLQSRAVAGVANKTLILAMPGSTKACRTAWENIIAPQLDAR 158 (172)
T ss_dssp CCHHHHHGGGCSEECHHHHHHHHHHHHHHHGGGGGGCCCEEEEETTEEEEEECSSHHHHHHHHHHTHHHHHCTT
T ss_pred CCHHHHHHHHhcccCCccHHHHHHHhhcccCcceecccccceeECCEEEEECCCCHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999998876 6555543 46889999976 477888999999854
No 13
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=99.95 E-value=1.3e-27 Score=210.01 Aligned_cols=138 Identities=34% Similarity=0.467 Sum_probs=123.2
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCC
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDV 277 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~ 277 (338)
+|||+||+||||+.+|+++|+|+++|+++|++ +|+++..+.++|||++.|+++|++++++.++|+||||||+|+|++|+
T Consensus 1 ~~~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~-~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~ 79 (164)
T 2is8_A 1 MFRVGILTVSDKGFRGERQDTTHLAIREVLAG-GPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLAPRDR 79 (164)
T ss_dssp CEEEEEEEECHHHHHTSSCCCHHHHHHHHHTT-SSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCC
T ss_pred CcEEEEEEEcCcccCCCcccchHHHHHHHHHH-CCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCCC
Confidence 47999999999999999999999999999999 99999999999999999999999999832389999999999999999
Q ss_pred hHHHHHhccccccCChHHHHHHhcCCCCCccccc---------eeEEEecCchHH--HHHHHhhhcccccc
Q psy7342 278 TPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLS---------RFKGNCPKKWVK--LIRRQNVIPWLGLW 337 (338)
Q Consensus 278 t~eal~~l~~~~lpG~~e~~~~~s~~~~p~A~ls---------R~vaGi~g~~v~--~a~~~~IlP~l~~~ 337 (338)
|++++++++++.+||+++.|+..+++..|.++++ +.++++||++.. .+++. ++|+|.+.
T Consensus 80 t~ea~~~~~~~~l~g~~~~~~~~~~~~~p~~~l~~g~~G~~~~~~v~~LPG~P~~~~~~~~~-v~p~l~~~ 149 (164)
T 2is8_A 80 TPEATRELLDREVPGLAELMRLVGLRKTPMAALSRGVAGVRGRTLILNLPGSPKGARESLEA-VLPVLPHA 149 (164)
T ss_dssp HHHHHHTTCSEECHHHHHHHTTTTCSSCCGGGGCCCCEEEETTEEEEEECSSHHHHHHHHHH-HGGGHHHH
T ss_pred hHHHHHHHhCCCCccHHHHHHHcCcCcCCceeeeeeeEEEECCeEEEECCCCHHHHHHHHHH-HHHHHHHH
Confidence 9999999999999999999998887777776663 567788998764 66655 99998753
No 14
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=99.94 E-value=1.2e-27 Score=213.13 Aligned_cols=139 Identities=31% Similarity=0.381 Sum_probs=123.3
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHH---cccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQ---EDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMS 273 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~---~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G 273 (338)
++|+|+||+||||+.+|+++|+|+++|+++|+ + +|+++ .+.+++||++.|+++|++++++.++|+||||||+|+|
T Consensus 4 ~~~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~-~G~~v-~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~g~g 81 (178)
T 2pbq_A 4 KKAVIGVVTISDRASKGIYEDISGKAIIDYLKDVII-TPFEV-EYRVIPDERDLIEKTLIELADEKGCSLILTTGGTGPA 81 (178)
T ss_dssp -CCEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBC-SCCEE-EEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSS
T ss_pred CCCEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHh-CCCEE-EEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCC
Confidence 68999999999999999999999999999998 9 99999 8899999999999999999973238999999999999
Q ss_pred CCCChHHHHHhccccccCChHHHHHHhcCCCCCccccc---------eeEEEecCchH--HHHHHHh--hhcccccc
Q psy7342 274 PRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLS---------RFKGNCPKKWV--KLIRRQN--VIPWLGLW 337 (338)
Q Consensus 274 ~~D~t~eal~~l~~~~lpG~~e~~~~~s~~~~p~A~ls---------R~vaGi~g~~v--~~a~~~~--IlP~l~~~ 337 (338)
++|+|++++++++++.+||+++.|+..++++.|.++++ +.++++||++. ..+++.+ ++|+|..+
T Consensus 82 ~~D~t~ea~~~~~~~~l~g~~~~~~~v~~~~~p~~~lsrg~ag~~~~~~v~~LPG~P~~~~~~~~~~~~v~p~l~~~ 158 (178)
T 2pbq_A 82 PRDVTPEATEAVCEKMLPGFGELMRQVSLKQVPTAILSRQTAGIRGSCLIVNLPGKPQSIKVCLDAVMPAIPYCIDL 158 (178)
T ss_dssp TTCCHHHHHHHHCSEECHHHHHHHHHHHHTTCGGGGGCCCCEEEETTEEEEEECSSHHHHHHHHHHHGGGHHHHHHH
T ss_pred CCCchHHHHHHHhCCCCCChHHHHHHHhcccCcccccccceeeeECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998877776653 46778888866 4677777 78988654
No 15
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=99.94 E-value=1.2e-26 Score=204.16 Aligned_cols=140 Identities=35% Similarity=0.492 Sum_probs=120.0
Q ss_pred ecCceEEEEecCCCccCCeeecCcHHHHHHHHHccc-----CCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 196 VRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDF-----QHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 196 ~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~-----G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
+++|||+||+||||+..|+++|+|++++.++|++ + |+++..+.+++||+++|+++|+++++..++|+||||||+
T Consensus 3 ~~~~rv~IistGde~~~G~~~d~n~~~l~~~l~~-~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~ 81 (167)
T 1uuy_A 3 GPEYKVAILTVSDTVSAGAGPDRSGPRAVSVVDS-SSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGT 81 (167)
T ss_dssp CCSEEEEEEEECHHHHTTSSCCSHHHHHHHHHHH-TTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCC
T ss_pred CCCcEEEEEEECCcccCCCCccCcHHHHHHHHHh-ccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 6889999999999999999999999999999998 8 999999999999999999999999862248999999999
Q ss_pred cCCCCCChHHHHHhccccccCChHHHHHHhcCCCCCcccc---------ceeEEEecCchHH--HHHHHhhhcccccc
Q psy7342 271 GMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAML---------SRFKGNCPKKWVK--LIRRQNVIPWLGLW 337 (338)
Q Consensus 271 s~G~~D~t~eal~~l~~~~lpG~~e~~~~~s~~~~p~A~l---------sR~vaGi~g~~v~--~a~~~~IlP~l~~~ 337 (338)
|+|++|+|++++++++++.+||+.+.++..++...|.+++ .+.++++|||++. .+|+.+ +|+|+++
T Consensus 82 g~g~~D~t~~a~~~~~~~~l~g~~~~~~~~g~~~~Pg~~~sr~~~G~~~~~~v~~LPG~P~s~~~~~~~~-~P~L~~~ 158 (167)
T 1uuy_A 82 GFTPRDVTPEATKKVIERETPGLLFVMMQESLKITPFAMLARSAAGIRGSTLIINMPGNPNAVAECMEAL-LPALKHA 158 (167)
T ss_dssp SSSTTCCHHHHHHHHCSEECHHHHHHHHHHHHHHCGGGGGCCCCEEEETTEEEEEECSSTTHHHHHHHHH-HHHHHHH
T ss_pred CCCCCCchHHHHHHHhcCCCCcHHHHHHhcccccCCCCcccceeEEEECCEEEEECCCCHHHHHHHHHHH-HHHHHHH
Confidence 9999999999999999999999987666555444444433 3678899999664 666555 5998764
No 16
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=99.93 E-value=1.8e-26 Score=204.15 Aligned_cols=142 Identities=25% Similarity=0.338 Sum_probs=124.7
Q ss_pred eecCceEEEEecCCCc-----cCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 195 LVRSTCHLLALVSDRC-----FNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 195 V~~~prVaIIstGdEl-----~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
..+++|++||++||+. ..|++.|+|+++|+++|++ +|+++..+.+|+||++.|++++..+.....+|+||||||
T Consensus 12 ~~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~-~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG 90 (178)
T 3iwt_A 12 APKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIE-NGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp -CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHH-TTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred CCCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHH-CCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 3578999999999964 4799999999999999999 999999999999999999999998876556999999999
Q ss_pred ccCCCCCChHHHHHhccccccCChHHHHHHhcCCCC---Cccccce---------eEEEecCchH--HHHHHHhhhcccc
Q psy7342 270 TGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVT---PLAMLSR---------FKGNCPKKWV--KLIRRQNVIPWLG 335 (338)
Q Consensus 270 ts~G~~D~t~eal~~l~~~~lpG~~e~~~~~s~~~~---p~A~lsR---------~vaGi~g~~v--~~a~~~~IlP~l~ 335 (338)
+|+|++|+|+|++++++++.++|+++.|+.+++++. +.++++| .++++||+|. ..+|+++|+|.|.
T Consensus 91 ~g~~~~D~t~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~G~~~~~~i~~LPG~P~~~~~~~~~~v~P~L~ 170 (178)
T 3iwt_A 91 TGYSPTDITVETIRKLFDREIEGFSDVFRLVSFNDPEVKAAAYLTKASAGIIGKKIVYLLPGSPDAVKLALKELILPEVG 170 (178)
T ss_dssp CSSSTTCCHHHHHGGGCSEECHHHHHHHHHHHHTSTTTGGGGGGCCCEEEEETTEEEEEECSCHHHHHHHHHHTHHHHHH
T ss_pred cccCCCCchHHHHHHhhhcccccHHHHHHHHHhccccccccccccccceeeECCEEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887653 4555544 5677889876 5788999999997
Q ss_pred cc
Q psy7342 336 LW 337 (338)
Q Consensus 336 ~~ 337 (338)
+.
T Consensus 171 h~ 172 (178)
T 3iwt_A 171 HL 172 (178)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 17
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=99.87 E-value=2.4e-22 Score=178.54 Aligned_cols=99 Identities=17% Similarity=0.230 Sum_probs=95.0
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCC
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDV 277 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~ 277 (338)
++||+||+||||++.|+++|+|+++|+++|++ +|+++..+.+|+||++.|+++|++++++ +|+||||||+|+|++|+
T Consensus 3 ~~~v~IistGdEll~G~i~DtN~~~l~~~L~~-~G~~v~~~~iv~Dd~~~I~~~l~~a~~~--~DlVittGG~g~~~~D~ 79 (172)
T 3kbq_A 3 AKNASVITVGNEILKGRTVNTNAAFIGNFLTY-HGYQVRRGFVVMDDLDEIGWAFRVALEV--SDLVVSSGGLGPTFDDM 79 (172)
T ss_dssp -CEEEEEEECHHHHTTSSCCHHHHHHHHHHHH-TTCEEEEEEEECSCHHHHHHHHHHHHHH--CSEEEEESCCSSSTTCC
T ss_pred CCEEEEEEEcccccCCcEEeHHHHHHHHHHHH-CCCEEEEEEEeCCCHHHHHHHHHHHHhc--CCEEEEcCCCcCCcccc
Confidence 58999999999999999999999999999999 9999999999999999999999999987 89999999999999999
Q ss_pred hHHHHHhccccccCChHHHHHH
Q psy7342 278 TPEAMNHLIDKKVPCIEHIIQT 299 (338)
Q Consensus 278 t~eal~~l~~~~lpG~~e~~~~ 299 (338)
|++++++++++.+++++++++.
T Consensus 80 T~ea~a~~~~~~l~~~~e~~~~ 101 (172)
T 3kbq_A 80 TVEGFAKCIGQDLRIDEDALAM 101 (172)
T ss_dssp HHHHHHHHHTCCCEECHHHHHH
T ss_pred hHHHHHHHcCCCeeeCHHHHHH
Confidence 9999999999999999988764
No 18
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=90.40 E-value=0.42 Score=42.57 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=48.9
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
..++|++|.++... .-+|.|...+...+++ .|+++....+-..+++.+.+.|++ +|.|+..||-.
T Consensus 26 ~~~~i~~Ip~As~~---~~~~~~~~s~~~a~~~-lG~~v~~~~i~~~~~~~~~~~l~~------ad~I~l~GG~~ 90 (206)
T 3l4e_A 26 QGKTVTFIPTASTV---EEVTFYVEAGKKALES-LGLLVEELDIATESLGEITTKLRK------NDFIYVTGGNT 90 (206)
T ss_dssp TTCEEEEECGGGGG---CSCCHHHHHHHHHHHH-TTCEEEECCTTTSCHHHHHHHHHH------SSEEEECCSCH
T ss_pred CCCEEEEECCCCCC---CCHHHHHHHHHHHHHH-cCCeEEEEEecCCChHHHHHHHHh------CCEEEECCCCH
Confidence 35899999987542 2235688889999999 999877655545678777777765 69999999753
No 19
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=81.04 E-value=12 Score=31.78 Aligned_cols=72 Identities=17% Similarity=0.138 Sum_probs=43.1
Q ss_pred EEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHH
Q psy7342 201 HLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPE 280 (338)
Q Consensus 201 VaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~e 280 (338)
|+||..| ++|...+..+|++ .|+++..... .++.+.+. . . ++|.||.+||-++.......+
T Consensus 3 i~iid~~---------~~~~~~~~~~l~~-~G~~~~~~~~-~~~~~~~~----~--~--~~dglil~Gg~~~~~~~~~~~ 63 (189)
T 1wl8_A 3 IVIMDNG---------GQYVHRIWRTLRY-LGVETKIIPN-TTPLEEIK----A--M--NPKGIIFSGGPSLENTGNCEK 63 (189)
T ss_dssp EEEEECS---------CTTHHHHHHHHHH-TTCEEEEEET-TCCHHHHH----H--T--CCSEEEECCCSCTTCCTTHHH
T ss_pred EEEEECC---------CchHHHHHHHHHH-CCCeEEEEEC-CCChHHhc----c--c--CCCEEEECCCCChhhhhhHHH
Confidence 5666554 4678899999999 9988764432 12222221 1 2 389999999974443334455
Q ss_pred HHHhccccccC
Q psy7342 281 AMNHLIDKKVP 291 (338)
Q Consensus 281 al~~l~~~~lp 291 (338)
.++...+...|
T Consensus 64 ~i~~~~~~~~P 74 (189)
T 1wl8_A 64 VLEHYDEFNVP 74 (189)
T ss_dssp HHHTGGGTCSC
T ss_pred HHHHHhhCCCe
Confidence 66554333333
No 20
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=77.32 E-value=2.3 Score=36.83 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=42.3
Q ss_pred HHHHHHHcccCCEEEEEEEcC----CCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 222 LLAQLLQEDFQHAHILKTCVP----DEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 222 ~L~~lL~~~~G~~v~~~~iV~----Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
.|.+.|++ .|+++.+++.-. .|+-.+...+.+++.++.+|.-|+..|||.|-
T Consensus 20 ~i~~~L~~-~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~ 75 (162)
T 2vvp_A 20 RIIEHLKQ-TGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGSLGIVLGGSGNGE 75 (162)
T ss_dssp HHHHHHHH-TTCEEEECSCCSCCTTCCHHHHHHHHHHHHHHSTTCEEEEEESSSHHH
T ss_pred HHHHHHHH-CCCEEEEeCCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCCcHHH
Confidence 36677888 999999998643 35778888888888766799999999999884
No 21
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=76.05 E-value=3.7 Score=35.35 Aligned_cols=52 Identities=12% Similarity=0.002 Sum_probs=42.5
Q ss_pred HHHHHHHcccCCEEEEEEEcC---CCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 222 LLAQLLQEDFQHAHILKTCVP---DEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 222 ~L~~lL~~~~G~~v~~~~iV~---Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
.|.+.|++ .|+++.+++.-. .|+-.+...+.+++.++.+|.-|...|||.|-
T Consensus 29 ~i~~~L~~-~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~ 83 (155)
T 1o1x_A 29 KVKNYLLG-KGIEVEDHGTYSEESVDYPDYAKKVVQSILSNEADFGILLCGTGLGM 83 (155)
T ss_dssp HHHHHHHH-TTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSCSEEEEEESSSHHH
T ss_pred HHHHHHHH-CCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEcCCcHHH
Confidence 45667778 999999998633 35788888888888877799999999999884
No 22
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=75.64 E-value=3.8 Score=35.02 Aligned_cols=53 Identities=19% Similarity=0.060 Sum_probs=43.9
Q ss_pred HHHHHHHHcccCCEEEEEEEcC---CCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 221 PLLAQLLQEDFQHAHILKTCVP---DEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~iV~---Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
..|...|++ .|+++.+++.-. .|+-.+...+.+++.++.+|.-|+..|||.|-
T Consensus 17 ~~i~~~L~~-~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~ 72 (149)
T 2vvr_A 17 HEIVAHLVE-RGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDGGILICGTGVGI 72 (149)
T ss_dssp HHHHHHHHH-TTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHH
T ss_pred HHHHHHHHH-CCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCceEEEEeCCcHHH
Confidence 347888999 999999998633 35788888888888777799999999999884
No 23
>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein initiative, MCSG, structural genomics, midwest center for S genomics; HET: MSE; 2.01A {Streptococcus pneumoniae}
Probab=74.57 E-value=3.6 Score=37.28 Aligned_cols=53 Identities=13% Similarity=0.030 Sum_probs=45.1
Q ss_pred HHHHHHHHcccCCEEEEEEEc------CCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 221 PLLAQLLQEDFQHAHILKTCV------PDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~iV------~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
..|...|++ .|+++.+++.- +.|+-.+...+.+++.++.+|.-|+..|||.|-
T Consensus 23 ~~i~~~L~~-~G~eV~D~G~~s~~d~~s~DYPd~a~~vA~~V~~g~~d~GIliCGTGiG~ 81 (216)
T 2ppw_A 23 DSLKEATDK-KGYQLFNYGMRGEEGESQLTYVQNGLMAAILLNTKAVDFVVTGCGTGVGA 81 (216)
T ss_dssp HHHHHHHHH-HTCEEEECSCCSCTTCCCCCHHHHHHHHHHHHHTTSCSEEEEEESSSHHH
T ss_pred HHHHHHHHH-CCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHcCCCCeEEEEcCCcHHH
Confidence 478889999 99999999875 236888888888888877799999999999874
No 24
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=73.40 E-value=5 Score=38.33 Aligned_cols=69 Identities=10% Similarity=0.026 Sum_probs=45.1
Q ss_pred ecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccC--CEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 196 VRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQ--HAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 196 ~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G--~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
-++.+|++|..|+ +-..-..++.-.-+..+.++ +| +++.....++++.+ ..+.|+.+.++ ++|+||++|
T Consensus 24 ~~~~kIglv~~g~-i~D~~f~~~~~~G~~~~~~~-~G~~~~~~~~e~~~~~~d-~~~~l~~l~~~-g~d~Ii~~g 94 (356)
T 3s99_A 24 EEKLKVGFIYIGP-PGDFGWTYQHDQARKELVEA-LGDKVETTFLENVAEGAD-AERSIKRIARA-GNKLIFTTS 94 (356)
T ss_dssp --CEEEEEECSSC-GGGSSHHHHHHHHHHHHHHH-HTTTEEEEEECSCCTTHH-HHHHHHHHHHT-TCSEEEECS
T ss_pred CCCCEEEEEEccC-CCchhHHHHHHHHHHHHHHH-hCCceEEEEEecCCCHHH-HHHHHHHHHHC-CCCEEEECC
Confidence 3568999999663 11111222233445566777 88 88877777776544 47788888876 599999986
No 25
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=73.13 E-value=11 Score=30.83 Aligned_cols=63 Identities=13% Similarity=0.062 Sum_probs=46.8
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
+++|.+.+.+.| ..|-...+++.+|+. .|+++++.+. .-.++++.++..+. ++|+|..|.-.+
T Consensus 3 ~~~vvla~~~~d-----~HdiG~~~v~~~l~~-~G~~Vi~lG~-~~p~e~~v~~a~~~----~~d~v~lS~~~~ 65 (137)
T 1ccw_A 3 KKTIVLGVIGSD-----CHAVGNKILDHAFTN-AGFNVVNIGV-LSPQELFIKAAIET----KADAILVSSLYG 65 (137)
T ss_dssp CCEEEEEEETTC-----CCCHHHHHHHHHHHH-TTCEEEEEEE-EECHHHHHHHHHHH----TCSEEEEEECSS
T ss_pred CCEEEEEeCCCc-----hhHHHHHHHHHHHHH-CCCEEEECCC-CCCHHHHHHHHHhc----CCCEEEEEecCc
Confidence 577777777765 466777899999999 9999999987 33456666665542 389999887554
No 26
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=72.48 E-value=5.2 Score=34.19 Aligned_cols=52 Identities=17% Similarity=0.056 Sum_probs=42.6
Q ss_pred HHHHHHHcccCCEEEEEEEcC---CCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 222 LLAQLLQEDFQHAHILKTCVP---DEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 222 ~L~~lL~~~~G~~v~~~~iV~---Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
.|.+.|++ .|+++.+++.-. .|.-.+...+.+++.++.+|.-|...|||.|-
T Consensus 17 ~i~~~L~~-~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~ 71 (149)
T 3he8_A 17 EIADFLKK-RGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGLGI 71 (149)
T ss_dssp HHHHHHHH-TTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHH
T ss_pred HHHHHHHH-CCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHH
Confidence 45667888 999999998754 46778888888888877799999999999884
No 27
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=72.28 E-value=5.1 Score=34.95 Aligned_cols=67 Identities=16% Similarity=0.027 Sum_probs=49.1
Q ss_pred ecCceEEEEecCCCccCCeeecCcHH----HHHHHHHcccCCEEEEEEEcC---CCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 196 VRSTCHLLALVSDRCFNKESEDKSGP----LLAQLLQEDFQHAHILKTCVP---DEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 196 ~~~prVaIIstGdEl~~G~i~DsN~~----~L~~lL~~~~G~~v~~~~iV~---Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
..++||+|-+ |..+. .|...|++ .|+++.+++.-. .|+-.+...+.+++.++.+|.-|...
T Consensus 18 ~~~MkIaIgs-----------DhaG~~lK~~i~~~L~~-~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliC 85 (169)
T 3ph3_A 18 GSHMKIGIGS-----------DHGGYNLKREIADFLKK-RGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVIC 85 (169)
T ss_dssp ---CEEEEEE-----------CGGGHHHHHHHHHHHHH-TTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred CCCCEEEEEe-----------CchHHHHHHHHHHHHHH-CCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 4667766554 33333 56677888 999999998754 46778888888888877799999999
Q ss_pred CccCCC
Q psy7342 269 GTGMSP 274 (338)
Q Consensus 269 Gts~G~ 274 (338)
|||.|-
T Consensus 86 GTGiG~ 91 (169)
T 3ph3_A 86 GTGLGI 91 (169)
T ss_dssp SSSHHH
T ss_pred CCcHHH
Confidence 999884
No 28
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=71.79 E-value=4.1 Score=36.47 Aligned_cols=62 Identities=11% Similarity=0.137 Sum_probs=42.6
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGM 272 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~ 272 (338)
..++|+||.++.. ..-.|.|...+...+++ .|+++...... +|+ .+. +.+ +|.|+..||-+.
T Consensus 30 ~~~~i~iI~~a~~---~~~~~~~~~~~~~al~~-lG~~~~~v~~~-~d~---~~~----l~~--ad~I~lpGG~~~ 91 (229)
T 1fy2_A 30 GRRSAVFIPFAGV---TQTWDEYTDKTAEVLAP-LGVNVTGIHRV-ADP---LAA----IEK--AEIIIVGGGNTF 91 (229)
T ss_dssp TCCEEEEECTTCC---SSCHHHHHHHHHHHHGG-GTCEEEETTSS-SCH---HHH----HHH--CSEEEECCSCHH
T ss_pred CCCeEEEEECCCC---CCCHHHHHHHHHHHHHH-CCCEEEEEecc-ccH---HHH----Hhc--CCEEEECCCcHH
Confidence 4699999999852 12256788888999999 99876554332 332 122 333 799999998643
No 29
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5
Probab=70.87 E-value=4.3 Score=33.16 Aligned_cols=68 Identities=22% Similarity=0.188 Sum_probs=47.3
Q ss_pred EEecCCCccCCeeecCcHHHHHHHHHccc------CCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 203 LALVSDRCFNKESEDKSGPLLAQLLQEDF------QHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 203 IIstGdEl~~G~i~DsN~~~L~~lL~~~~------G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
|+..||.+..|.-...-...+...|++.+ ++.+...++-.+....+.+.+.+.+...++|+||...|+
T Consensus 4 i~~~GDS~t~g~~~~~~~~~l~~~l~~~~~~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~~~~pd~vvi~~G~ 77 (195)
T 1yzf_A 4 IVLFGDSITAGYLDEAVSPVLVDLVKRDIAAMGLEEVAVINAGMPGDTTEDGLKRLNKEVLIEKPDEVVIFFGA 77 (195)
T ss_dssp EEEEESHHHHCBTTBSSCSHHHHHHHHHHHHTTBCCEEEEEEECTTCCHHHHHHHHHHHTGGGCCSEEEEECCT
T ss_pred EEEEccccccCcCCCChHHHHHHHHHHhccccCCceEEEEeCCCCCCCHHHHHHHHHHhhhhcCCCEEEEEeec
Confidence 56678888766322223345666666522 478899999899888888888876544468999988775
No 30
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=70.68 E-value=5.1 Score=36.61 Aligned_cols=74 Identities=12% Similarity=0.075 Sum_probs=51.5
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcC------CCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVP------DEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~------Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
..++|++|--.|.- |+ -..--..|...|++ .|+++.+++.-. .|+-.+...+.+++.++.+|.-|+..||
T Consensus 18 ~~mkiali~~~sqa--~k-N~~lKe~i~~~L~~-~G~eV~D~G~~s~~d~~svDYPd~a~~vA~~V~~g~~d~GIliCGT 93 (231)
T 3c5y_A 18 QGMKIALIIENSQA--AK-NAVVHEALTTVAEP-LGHKVFNYGMYTAEDKASLTYVMNGLLAGILLNSGAADFVVTGCGT 93 (231)
T ss_dssp -CCEEEECCCGGGG--GG-HHHHHHHHHHHHGG-GTCEEEECCCCSTTCSSCCCHHHHHHHHHHHHHHTSCSEEEEEESS
T ss_pred hcceEEEEecCCHh--hh-HHHHHHHHHHHHHH-CCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHcCCCCeEEEEcCC
Confidence 45777776543321 11 00112467778888 999999998752 2577888888888876679999999999
Q ss_pred cCCC
Q psy7342 271 GMSP 274 (338)
Q Consensus 271 s~G~ 274 (338)
|.|-
T Consensus 94 GiG~ 97 (231)
T 3c5y_A 94 GMGS 97 (231)
T ss_dssp SHHH
T ss_pred cHHH
Confidence 9874
No 31
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=68.82 E-value=5.4 Score=34.68 Aligned_cols=52 Identities=15% Similarity=0.065 Sum_probs=39.0
Q ss_pred HHHHHHHcccCCEEEEEEEcCC---CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 222 LLAQLLQEDFQHAHILKTCVPD---EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 222 ~L~~lL~~~~G~~v~~~~iV~D---d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
.|.+.|++ .|+++.+++.-.+ |+-.+...+.+++.++.+|.-|...|||.|-
T Consensus 38 ~i~~~L~~-~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d~GIliCGTGiG~ 92 (166)
T 3s5p_A 38 FLQQRASA-HGYEVMDLGTESDASVDYPDFAKIGCEAVTSGRADCCILVCGTGIGI 92 (166)
T ss_dssp HHHHHHHH-TTCEEEEEEC--------CHHHHHHHHHHHTTSCSEEEEEESSSHHH
T ss_pred HHHHHHHH-CCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCCcHHH
Confidence 45567788 9999999987543 4557777888888777799999999999884
No 32
>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}
Probab=68.18 E-value=6.4 Score=35.56 Aligned_cols=52 Identities=15% Similarity=0.110 Sum_probs=43.3
Q ss_pred HHHHHHHcccCCEEEEEEE--c---CCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 222 LLAQLLQEDFQHAHILKTC--V---PDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 222 ~L~~lL~~~~G~~v~~~~i--V---~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
.|...|++ .|+++.+++. - +.|+-.+...+.+++.++.+|.-|+..|||.|.
T Consensus 24 ~l~~~L~~-~G~eV~D~G~~~~~~~~~dYpd~a~~vA~~V~~g~~d~GIliCGTGiG~ 80 (214)
T 3ono_A 24 ELNSVAGG-LGHDVFNVGMTDENDHHLTYIHLGIMASILLNSKAVDFVVTGCGTGQGA 80 (214)
T ss_dssp HHHHHHHH-TTCEEEECSCSSTTSSCCCHHHHHHHHHHHHHTTSCSEEEEEESSSHHH
T ss_pred HHHHHHHH-CCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHH
Confidence 57788899 9999999995 2 236778888888888877799999999999884
No 33
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0
Probab=66.49 E-value=4.4 Score=36.44 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=54.6
Q ss_pred EEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHH
Q psy7342 202 LLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEA 281 (338)
Q Consensus 202 aIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~ea 281 (338)
.|+.||=+-+.|...|.+...+..+-.. .+..-+....+|-+.+...+.+.+++++.+.|+||..|=.| |..+++.|-
T Consensus 5 ~VLvTGF~PF~~~~~NPS~~~v~~L~~~-i~~~~i~~~~lPv~~~~~~~~l~~~i~~~~Pd~Vi~vG~a~-gr~~i~lEr 82 (215)
T 3giu_A 5 HILVTGFAPFDNQNINPSWEAVTQLEDI-IGTHTIDKLKLPTSFKKVDNIINKTLASNHYDVVLAIGQAG-GRNAITPER 82 (215)
T ss_dssp EEEEEEECCCTTCSCCHHHHHHHHSCSE-ETTEEEEEEEECSCHHHHHHHHHHHHHHSCCSEEEEEEECT-TCCSBEEBC
T ss_pred EEEEEecCCCCCCCCChHHHHHHHhccc-cCCcEEEEEEeceehHhHHHHHHHHHHHhCCCEEEEeccCC-CCceEEEEE
Confidence 4788888877776555555444444333 43333445578999999999999988876799999987554 566776554
Q ss_pred H
Q psy7342 282 M 282 (338)
Q Consensus 282 l 282 (338)
.
T Consensus 83 ~ 83 (215)
T 3giu_A 83 V 83 (215)
T ss_dssp E
T ss_pred E
Confidence 4
No 34
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=65.79 E-value=13 Score=31.40 Aligned_cols=77 Identities=18% Similarity=0.143 Sum_probs=52.8
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRD 276 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D 276 (338)
++++|-+.+.+.| ..|-...+++.+|+. .|+++++.+.- -.+++|.+++.+ .++|+|..|.-.+ ...+
T Consensus 17 ~~~~vlla~~~gd-----~HdiG~~~va~~l~~-~G~eVi~lG~~-~p~e~lv~aa~~----~~~diV~lS~~~~-~~~~ 84 (161)
T 2yxb_A 17 RRYKVLVAKMGLD-----GHDRGAKVVARALRD-AGFEVVYTGLR-QTPEQVAMAAVQ----EDVDVIGVSILNG-AHLH 84 (161)
T ss_dssp CSCEEEEEEESSS-----SCCHHHHHHHHHHHH-TTCEEECCCSB-CCHHHHHHHHHH----TTCSEEEEEESSS-CHHH
T ss_pred CCCEEEEEeCCCC-----ccHHHHHHHHHHHHH-CCCEEEECCCC-CCHHHHHHHHHh----cCCCEEEEEeech-hhHH
Confidence 5788888887765 467778899999999 99999988853 345666666554 2489999886544 2233
Q ss_pred ChHHHHHhc
Q psy7342 277 VTPEAMNHL 285 (338)
Q Consensus 277 ~t~eal~~l 285 (338)
.+++.++.+
T Consensus 85 ~~~~~i~~L 93 (161)
T 2yxb_A 85 LMKRLMAKL 93 (161)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 35
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=65.42 E-value=37 Score=28.86 Aligned_cols=47 Identities=21% Similarity=0.162 Sum_probs=29.9
Q ss_pred cCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccC
Q psy7342 217 DKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGM 272 (338)
Q Consensus 217 DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~ 272 (338)
++....+..+|++ .|+++.....-..+.+.+ ... + +|.||.+||.+.
T Consensus 11 ~s~~~~~~~~l~~-~G~~~~v~~~~~~~~~~~----~~~--~--~dglil~gG~~~ 57 (195)
T 1qdl_B 11 DSFVYNIAQIVGE-LGSYPIVIRNDEISIKGI----ERI--D--PDRLIISPGPGT 57 (195)
T ss_dssp CSSHHHHHHHHHH-TTCEEEEEETTTSCHHHH----HHH--C--CSEEEECCCSSC
T ss_pred CchHHHHHHHHHh-CCCEEEEEeCCCCCHHHH----hhC--C--CCEEEECCCCCC
Confidence 4567888999999 998876543211122222 211 3 899999998654
No 36
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=64.02 E-value=4.5 Score=37.99 Aligned_cols=69 Identities=12% Similarity=0.047 Sum_probs=43.7
Q ss_pred HHHhhCCCceeEeecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCC-EEEEEEEc----CCCHHHHHHHHHHHHh
Q psy7342 183 AQRCSTSMKYWELVRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQH-AHILKTCV----PDEMEEIKDKLKYWVD 257 (338)
Q Consensus 183 ~lLas~Gi~~v~V~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~-~v~~~~iV----~Dd~e~I~~aL~~a~~ 257 (338)
.++..+|- ++++|++|+|...- ++.........+++ +|+ .+....+- .+|+ .+.+.|+
T Consensus 47 ~~v~lagg------~~~~I~~IptAs~~-----~~~~~~~~~~~f~~-lG~~~v~~L~i~~r~~a~~~-~~~~~l~---- 109 (291)
T 3en0_A 47 TFWSRSGG------NDAIIGIIPSASRE-----PLLIGERYQTIFSD-MGVKELKVLDIRDRAQGDDS-GYRLFVE---- 109 (291)
T ss_dssp HHHHHTTG------GGCEEEEECTTCSS-----HHHHHHHHHHHHHH-HCCSEEEECCCCSGGGGGCH-HHHHHHH----
T ss_pred HHHHHcCC------CCCeEEEEeCCCCC-----hHHHHHHHHHHHHH-cCCCeeEEEEecCccccCCH-HHHHHHh----
Confidence 45555562 36899999987652 34445566788999 999 44444331 2222 3334444
Q ss_pred CCCCcEEEEeCCc
Q psy7342 258 QSKVDLIFTSGGT 270 (338)
Q Consensus 258 ~~~~DlVITTGGt 270 (338)
+ +|.|+.+||-
T Consensus 110 ~--ad~I~v~GGn 120 (291)
T 3en0_A 110 Q--CTGIFMTGGD 120 (291)
T ss_dssp H--CSEEEECCSC
T ss_pred c--CCEEEECCCC
Confidence 3 7999999986
No 37
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=62.87 E-value=15 Score=29.88 Aligned_cols=68 Identities=12% Similarity=0.053 Sum_probs=49.3
Q ss_pred EEEecCCCccCCee---ecCcHHHHHHHHHccc--CCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 202 LLALVSDRCFNKES---EDKSGPLLAQLLQEDF--QHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 202 aIIstGdEl~~G~i---~DsN~~~L~~lL~~~~--G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
.|+..||.+..|.- .++-...+...|.+ . ++.+...++-.+....+.+.+.+.+...++|+||...|+
T Consensus 4 ~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~-~~~~~~v~n~g~~G~~~~~~~~~~~~~~~~~~pd~vvi~~G~ 76 (185)
T 3hp4_A 4 TILILGDXLSAAYGLQQEEGWVKLLQDKYDA-EQSDIVLINASISGETSGGALRRLDALLEQYEPTHVLIELGA 76 (185)
T ss_dssp EEEEEECTTTTTTTSCGGGSHHHHHHHHHHH-TTCCEEEEECCCTTCCHHHHHHHHHHHHHHHCCSEEEEECCH
T ss_pred eEEEECCcccccCCCCCcccHHHHHHHHHHh-cCCcEEEEECCcCCccHHHHHHHHHHHHhhcCCCEEEEEeec
Confidence 46778999887632 12335677777776 4 356777889889888888888887764348999998885
No 38
>3sgw_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, valley fever; 1.70A {Coccidioides immitis} PDB: 3sdw_A 3qd5_A*
Probab=62.44 E-value=8.9 Score=33.87 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=42.1
Q ss_pred HHHHHHHcccC--CEEEEEEEc----CCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 222 LLAQLLQEDFQ--HAHILKTCV----PDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 222 ~L~~lL~~~~G--~~v~~~~iV----~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
.|.+.|++ .| +++++++.- +.|+-.+...+.+++.++.+|.-|...|||.|-
T Consensus 46 ~i~~~L~~-~G~g~eV~D~G~~s~~e~~DYPd~a~~vA~~V~~ge~d~GIliCGTGiG~ 103 (184)
T 3sgw_A 46 ALKAHLSD-NPLVSSITDVGVTSTTDKTAYPHVAIQAAQLIKDGKVDRALMICGTGLGV 103 (184)
T ss_dssp HHHHHHTT-CTTEEEEEECSCCSTTCCCCHHHHHHHHHHHHHTTSCSEEEEEESSSHHH
T ss_pred HHHHHHHh-CCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCCcHHH
Confidence 45566777 88 799999875 247888888888888877799999999999884
No 39
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=61.35 E-value=15 Score=33.05 Aligned_cols=66 Identities=11% Similarity=-0.010 Sum_probs=32.4
Q ss_pred cCceEEEEecC-CC---ccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 197 RSTCHLLALVS-DR---CFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 197 ~~prVaIIstG-dE---l~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
.+|+|+|.+-- .+ ...++-.+.-..-....+++ .|+.++......| .+ + .+.++. +|-||.+||-+
T Consensus 3 ~~p~IGi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-aG~~pv~lp~~~~-~~-~----~~~l~~--~DGlil~GG~~ 72 (254)
T 3fij_A 3 LKPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQK-VGGFPIALPIDDP-ST-A----VQAISL--VDGLLLTGGQD 72 (254)
T ss_dssp CCCEEEEEC------------------CHHHHHHHHH-HTCEEEEECCCCG-GG-H----HHHHHT--CSEEEECCCSC
T ss_pred CCCEEEEeCCcccccccccCCcchhhhhHHHHHHHHH-CCCEEEEEeCCCc-hH-H----HHHHhh--CCEEEECCCCC
Confidence 36889987631 11 01111112112223445666 8988775443322 22 3 334455 89999999965
No 40
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=60.81 E-value=20 Score=31.02 Aligned_cols=77 Identities=14% Similarity=0.044 Sum_probs=53.2
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRD 276 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D 276 (338)
++++|-+.+.+ |...|-...+++.+|+. .|+++++.+. .-..+.+.+++++. ++|+|..|.-... ..+
T Consensus 87 ~~~~vll~~~~-----gd~H~iG~~~va~~l~~-~G~~v~~LG~-~vp~~~l~~~~~~~----~~d~v~lS~~~~~-~~~ 154 (210)
T 1y80_A 87 SVGKIVLGTVK-----GDLHDIGKNLVAMMLES-GGFTVYNLGV-DIEPGKFVEAVKKY----QPDIVGMSALLTT-TMM 154 (210)
T ss_dssp CCCEEEEEEBT-----TCCCCHHHHHHHHHHHH-TTCEEEECCS-SBCHHHHHHHHHHH----CCSEEEEECCSGG-GTH
T ss_pred CCCEEEEEeCC-----CcccHHHHHHHHHHHHH-CCCEEEECCC-CCCHHHHHHHHHHc----CCCEEEEeccccc-cHH
Confidence 35666666554 45677778899999999 9999999986 55577777777653 3899999986543 233
Q ss_pred ChHHHHHhc
Q psy7342 277 VTPEAMNHL 285 (338)
Q Consensus 277 ~t~eal~~l 285 (338)
.+++.++.+
T Consensus 155 ~~~~~i~~l 163 (210)
T 1y80_A 155 NMKSTIDAL 163 (210)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 41
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=60.13 E-value=14 Score=31.51 Aligned_cols=69 Identities=20% Similarity=0.154 Sum_probs=39.8
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCC--HHHHHHHHHHHHhCCCCcEEEEeCCc-cCCCC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDE--MEEIKDKLKYWVDQSKVDLIFTSGGT-GMSPR 275 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd--~e~I~~aL~~a~~~~~~DlVITTGGt-s~G~~ 275 (338)
|+|+||-- +||-...+..+|++ .|+++.. ++++ .+.+.+.+... + .|-+|.+||- ++.+.
T Consensus 1 ~~i~iiDn---------~~s~~~~i~~~l~~-~G~~~~v---~~~~~~~~~i~~~l~~~-~---~~~iil~gGpg~~~~~ 63 (192)
T 1i1q_B 1 ADILLLDN---------IDSFTWNLADQLRT-NGHNVVI---YRNHIPAQTLIDRLATM-K---NPVLMLSPGPGVPSEA 63 (192)
T ss_dssp CEEEEEEC---------SCSSHHHHHHHHHH-TTCEEEE---EETTSCSHHHHHHHTTC-S---SEEEEECCCSSCGGGS
T ss_pred CcEEEEEC---------CccHHHHHHHHHHH-CCCeEEE---EECCCCHHHHHHHhhhc-c---CCeEEECCCCcCchhC
Confidence 46777762 34567888999999 9987653 4433 24444433211 1 2335555554 44555
Q ss_pred CChHHHHHh
Q psy7342 276 DVTPEAMNH 284 (338)
Q Consensus 276 D~t~eal~~ 284 (338)
++..+.++.
T Consensus 64 ~~~~~l~~~ 72 (192)
T 1i1q_B 64 GCMPELLTR 72 (192)
T ss_dssp TTHHHHHHH
T ss_pred chHHHHHHH
Confidence 666666654
No 42
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=60.08 E-value=5.8 Score=36.06 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=54.5
Q ss_pred CCCceeEeecCceEEEEecCCCccCCeeecCcHHHHHHHHHc-ccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEE
Q psy7342 188 TSMKYWELVRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQE-DFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFT 266 (338)
Q Consensus 188 ~Gi~~v~V~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~-~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVIT 266 (338)
+|.+.+. |+.++ .|+.||=+-+.|...|.+...+ ..|.. ..+.--+....+|=+.+...+.+.+++++.+.|+||.
T Consensus 13 ~~~~~~~-~~~mk-~VLvTGF~PF~g~~~NPS~~~v-~~L~~~~i~~~~i~~~~lPv~y~~~~~~l~~~i~~~~Pd~Vih 89 (228)
T 4hps_A 13 LGTENLY-FQSMK-TILVTAFDPFGGEAINPSWEAI-KPLQGSQVFGANIEICQIPCIFDTSLEHLYAAVDKYQPELVIS 89 (228)
T ss_dssp -----CC-SCCCE-EEEEEEECCCTTCSCCHHHHHH-GGGTTCEETTEEEEEEEECSSTTHHHHHHHHHHHHHCCSEEEE
T ss_pred cCccccc-CCCCC-EEEEEeccCCCCCCCChHHHHH-HHhcCcCCCCcEEEEEEcceEeHHHHHHHHHHHHhhCCCEEEE
Confidence 4666665 55543 6788998877676544444333 34443 1222234455788888888888888777656999999
Q ss_pred eCCccCCCCCChHHHH
Q psy7342 267 SGGTGMSPRDVTPEAM 282 (338)
Q Consensus 267 TGGts~G~~D~t~eal 282 (338)
.|=.| |..+++.|-.
T Consensus 90 vG~ag-gr~~i~lEr~ 104 (228)
T 4hps_A 90 VGQAG-GRTNITVERV 104 (228)
T ss_dssp EEECT-TCSSEEEECE
T ss_pred eccCC-CCceEEEEEE
Confidence 88655 5566665443
No 43
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=59.33 E-value=9.3 Score=33.75 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=35.1
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
++|+||..|+ +|...+...|++ .|.++..... ..+.+.+.. .+ +|.||.+||-+
T Consensus 25 ~~I~iiD~g~---------~~~~~i~~~l~~-~G~~~~vv~~-~~~~~~l~~------~~--~dglil~Gg~~ 78 (218)
T 2vpi_A 25 GAVVILDAGA---------QYGKVIDRRVRE-LFVQSEIFPL-ETPAFAIKE------QG--FRAIIISGGPN 78 (218)
T ss_dssp TCEEEEECST---------TTTHHHHHHHHH-TTCCEEEECT-TCCHHHHHH------HT--CSEEEEEC---
T ss_pred CeEEEEECCC---------chHHHHHHHHHH-CCCEEEEEEC-CCChHHHhh------cC--CCEEEECCCCc
Confidence 6899998875 455788899999 9987664432 223444432 23 89999999864
No 44
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=57.56 E-value=7.7 Score=32.09 Aligned_cols=67 Identities=13% Similarity=0.063 Sum_probs=42.4
Q ss_pred EEecCCCccCCeeecC---cHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 203 LALVSDRCFNKESEDK---SGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 203 IIstGdEl~~G~i~Ds---N~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
|+..||.+..|.-... -...++..|.. . ..+...++-.+....+...+.+.+...++|+||...|+=
T Consensus 4 i~~~GDSit~g~~~~~~~~~~~~l~~~l~~-~-~~v~n~g~~G~~~~~~~~~~~~~~~~~~pd~Vii~~G~N 73 (190)
T 1ivn_A 4 LLILGDSLSAGYRMSASAAWPALLNDKWQS-K-TSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGN 73 (190)
T ss_dssp EEEEECHHHHCSSSCGGGSHHHHHHHHC-C-C-EEEEECCCTTCCHHHHHHHHHHHHHHHCCSEEEEECCTT
T ss_pred EEEEecCcccCCCCCCCcCHHHHHHHHhcc-C-cEEEecCCCCchHHHHHHHHHHHHHhcCCCEEEEEeecc
Confidence 6678888875533221 12233333332 1 678888988888877777777766533489999887753
No 45
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=57.41 E-value=38 Score=29.77 Aligned_cols=69 Identities=7% Similarity=-0.047 Sum_probs=47.0
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
++.+++++..... ......-...+...+++ .|+.+.......+|.+.-.+.++.++.+ ++|-||..+..
T Consensus 3 ~~~~I~~i~~~~~---~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~ 71 (305)
T 3g1w_A 3 LNETYMMITFQSG---MDYWKRCLKGFEDAAQA-LNVTVEYRGAAQYDIQEQITVLEQAIAK-NPAGIAISAID 71 (305)
T ss_dssp --CEEEEEESSTT---STHHHHHHHHHHHHHHH-HTCEEEEEECSSSCHHHHHHHHHHHHHH-CCSEEEECCSS
T ss_pred CCceEEEEEccCC---ChHHHHHHHHHHHHHHH-cCCEEEEeCCCcCCHHHHHHHHHHHHHh-CCCEEEEcCCC
Confidence 3466777775422 22233334566778888 9999887556677888888888888876 59999987643
No 46
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=57.09 E-value=50 Score=29.23 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=45.7
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
+.+|+++.-.-. ......-...+...+++ .|+++..... .+|.+.-.+.++.++.+ ++|-||..+..
T Consensus 2 ~~~Igvi~~~~~---~~~~~~~~~gi~~~a~~-~g~~~~~~~~-~~~~~~~~~~i~~l~~~-~vdgiIi~~~~ 68 (313)
T 3m9w_A 2 EVKIGMAIDDLR---LERWQKDRDIFVKKAES-LGAKVFVQSA-NGNEETQMSQIENMINR-GVDVLVIIPYN 68 (313)
T ss_dssp -CEEEEEESCCS---SSTTHHHHHHHHHHHHH-TSCEEEEEEC-TTCHHHHHHHHHHHHHT-TCSEEEEECSS
T ss_pred CcEEEEEeCCCC---ChHHHHHHHHHHHHHHH-cCCEEEEECC-CCCHHHHHHHHHHHHHc-CCCEEEEeCCC
Confidence 467888775321 22223344557778888 9998876644 77788878888888876 59999988753
No 47
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A
Probab=56.84 E-value=3.8 Score=37.10 Aligned_cols=79 Identities=20% Similarity=0.230 Sum_probs=52.4
Q ss_pred EEEecCCCccCCeeecCcHHHHHHHHHcccCCE-EEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHH
Q psy7342 202 LLALVSDRCFNKESEDKSGPLLAQLLQEDFQHA-HILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPE 280 (338)
Q Consensus 202 aIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~-v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~e 280 (338)
.|+.||=+-+.|...|.+...+..+-.+ .+.. -+....+|-+.+...+.+.+++++.+.|+||..|=.| |..+++.|
T Consensus 4 ~VLvTGF~PF~~~~~NPS~~~v~~L~~~-i~~~~~i~~~~lPv~y~~~~~~l~~~i~~~~Pd~VihvG~ag-gr~~i~lE 81 (223)
T 3ro0_A 4 KVLLTGFDPFGGETVNPSWEAVKRLNGA-AEGPASIVSEQVPTVFYKSLAVLREAMKKHQPDIIICVGQAG-GRMQITPE 81 (223)
T ss_dssp EEEEEEECCCTTCSCCHHHHHHHHTTTC-EETTEEEEEEEECSCTTHHHHHHHHHHHHHCCSEEEEEEECT-TCCSBEEB
T ss_pred EEEEEeCCCCCCCCCChHHHHHHHhccc-cCCCcEEEEEEeeeEehhHHHHHHHHHHHhCCCEEEEeccCC-CCceEEEE
Confidence 3678888777676555544444444333 3333 3445577888888888888887755699999988655 66677755
Q ss_pred HH
Q psy7342 281 AM 282 (338)
Q Consensus 281 al 282 (338)
-.
T Consensus 82 r~ 83 (223)
T 3ro0_A 82 RV 83 (223)
T ss_dssp SE
T ss_pred EE
Confidence 54
No 48
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=55.45 E-value=13 Score=30.64 Aligned_cols=71 Identities=13% Similarity=0.032 Sum_probs=50.6
Q ss_pred eEEEEecCCCccCCee------------ecCcHHHHHHHHHcc---cCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEE
Q psy7342 200 CHLLALVSDRCFNKES------------EDKSGPLLAQLLQED---FQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLI 264 (338)
Q Consensus 200 rVaIIstGdEl~~G~i------------~DsN~~~L~~lL~~~---~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlV 264 (338)
.-.|+..||.+..|.- ...-...+...|... .++.+...++-.+....+...+.+.+...++|+|
T Consensus 8 ~~~i~~~GDSit~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~n~g~~G~~~~~~~~~~~~~~~~~~pd~v 87 (216)
T 3rjt_A 8 GSKLVMVGDSITDCGRAHPVGEAPRGGLGNGYVALVDAHLQVLHPDWRIRVVNVGTSGNTVADVARRWEDDVMALQPDYV 87 (216)
T ss_dssp TCEEEEEESHHHHTTCCSSCEESSTTTTCSSHHHHHHHHHHHHCGGGCCEEEECCCTTCCHHHHHHHHHHHTGGGCCSEE
T ss_pred CCEEEEEeccccccCCCcccccccccccCccHHHHHHHHHHhhCCCCCeEEEECCCCCccHHHHHHHHHhHHhhcCCCEE
Confidence 3456778998875532 233456777777751 2488999999999988888887765544468999
Q ss_pred EEeCCc
Q psy7342 265 FTSGGT 270 (338)
Q Consensus 265 ITTGGt 270 (338)
+...|+
T Consensus 88 vi~~G~ 93 (216)
T 3rjt_A 88 SLMIGV 93 (216)
T ss_dssp EEECCH
T ss_pred EEEeec
Confidence 998875
No 49
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=55.45 E-value=25 Score=29.70 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=48.3
Q ss_pred ceEEEEecCCCccCCeee---cCcHHHHHHHHHcccCCEEE----------------EEEEcCCCHHHHHHHHHHHHhCC
Q psy7342 199 TCHLLALVSDRCFNKESE---DKSGPLLAQLLQEDFQHAHI----------------LKTCVPDEMEEIKDKLKYWVDQS 259 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~---DsN~~~L~~lL~~~~G~~v~----------------~~~iV~Dd~e~I~~aL~~a~~~~ 259 (338)
....|+..||.+..|.-. ++=...+...|.. .|..+. ..++-.+....+.+.+.+.+...
T Consensus 4 ~~~~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~-~~~~v~~~~~~~~G~~~~~~~~n~g~~G~~~~~~~~~l~~~l~~~ 82 (215)
T 2vpt_A 4 KTIKIMPVGDSCTEGMGGGEMGSYRTELYRLLTQ-AGLSIDFVGSQRSGPSSLPDKDHEGHSGWTIPQIASNINNWLNTH 82 (215)
T ss_dssp CEEEEEEEESHHHHTCSSSTTCTTHHHHHHHHHH-TTCEEEECCSEECCCTTCSCCEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CceEEEecccccccCCCCCCCCchHHHHHHHHHH-cCCceEEEecccCCCCCCCCCCccCcCchhHHHHHHHHHHHhhcc
Confidence 456788899998765332 2345677888887 666443 55666777777777777765433
Q ss_pred CCcEEEEeCCc
Q psy7342 260 KVDLIFTSGGT 270 (338)
Q Consensus 260 ~~DlVITTGGt 270 (338)
.+|+||...|+
T Consensus 83 ~pd~vvi~~G~ 93 (215)
T 2vpt_A 83 NPDVVFLWIGG 93 (215)
T ss_dssp CCSEEEEECCH
T ss_pred CCCEEEEEccc
Confidence 48999988876
No 50
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=54.11 E-value=11 Score=33.36 Aligned_cols=78 Identities=12% Similarity=0.060 Sum_probs=51.4
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC-C
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP-R 275 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~-~ 275 (338)
.+++|.+-+.+ |...|-...++..+|+. .|+++++.+.-- .++.|.+++.+ .++|+|..||...++. .
T Consensus 91 ~~~~vll~~v~-----gd~HdiG~~iv~~~l~~-~G~~Vi~LG~~v-p~e~iv~~~~~----~~~d~v~l~~S~l~~~~~ 159 (215)
T 3ezx_A 91 EAGLAITFVAE-----GDIHDIGHRLVTTMLGA-NGFQIVDLGVDV-LNENVVEEAAK----HKGEKVLLVGSALMTTSM 159 (215)
T ss_dssp -CCEEEEEECT-----TCCCCHHHHHHHHHHHH-TSCEEEECCSSC-CHHHHHHHHHH----TTTSCEEEEEECSSHHHH
T ss_pred CCCeEEEEeCC-----CChhHHHHHHHHHHHHH-CCCeEEEcCCCC-CHHHHHHHHHH----cCCCEEEEEchhcccCcH
Confidence 45777776654 45677788899999999 999999998722 35566555554 2489999966555543 2
Q ss_pred CChHHHHHhc
Q psy7342 276 DVTPEAMNHL 285 (338)
Q Consensus 276 D~t~eal~~l 285 (338)
+.+++.++.+
T Consensus 160 ~~~~~~i~~l 169 (215)
T 3ezx_A 160 LGQKDLMDRL 169 (215)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 51
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=53.74 E-value=36 Score=29.25 Aligned_cols=67 Identities=13% Similarity=0.059 Sum_probs=44.3
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEE-cCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTC-VPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~i-V~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
++|+++.-+.. ......-...+...+++ .|+++..... -.+|.+.-.+.++.++.+..+|-||..+-
T Consensus 1 ~~Ig~i~~~~~---~~~~~~~~~gi~~~~~~-~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~ 68 (276)
T 3ksm_A 1 PKLLLVLKGDS---NAYWRQVYLGAQKAADE-AGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPN 68 (276)
T ss_dssp CEEEEECSCSS---STHHHHHHHHHHHHHHH-HTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCS
T ss_pred CeEEEEeCCCC---ChHHHHHHHHHHHHHHH-cCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 46777764321 22233334556777888 9998776543 34678888888888887622999998764
No 52
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=52.59 E-value=35 Score=29.97 Aligned_cols=65 Identities=3% Similarity=-0.113 Sum_probs=44.3
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
+.+|+++.-... ......-...+...+++ .|+++..... +|.+.-.+.++.++.+ ++|-||..+.
T Consensus 2 ~~~Ig~i~~~~~---~~~~~~~~~gi~~~a~~-~g~~~~~~~~--~~~~~~~~~i~~l~~~-~vdgiii~~~ 66 (306)
T 8abp_A 2 NLKLGFLVKQPE---EPWFQTEWKFADKAGKD-LGFEVIKIAV--PDGEKTLNAIDSLAAS-GAKGFVICTP 66 (306)
T ss_dssp CEEEEEEESCTT---SHHHHHHHHHHHHHHHH-HTEEEEEEEC--CSHHHHHHHHHHHHHT-TCCEEEEECS
T ss_pred CeEEEEEeCCCC---chHHHHHHHHHHHHHHH-cCCEEEEeCC--CCHHHHHHHHHHHHHc-CCCEEEEeCC
Confidence 467888764321 12223334456677888 8998876554 5788888889988876 5999998874
No 53
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=51.05 E-value=19 Score=33.63 Aligned_cols=86 Identities=8% Similarity=0.028 Sum_probs=40.1
Q ss_pred ccCCCceeChhcHHHHHhhCCCceeEeecCceEEEEecCCCcc--CCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHH
Q psy7342 169 QYSTTQVIRPDTNHAQRCSTSMKYWELVRSTCHLLALVSDRCF--NKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEME 246 (338)
Q Consensus 169 ll~~G~~l~p~~i~~lLas~Gi~~v~V~~~prVaIIstGdEl~--~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e 246 (338)
++++|+.+++..- . -.+|+|+|.+...... .+.-..-+...+..+|++ .|+.+.....- ++.+
T Consensus 14 ~~~~~~~m~~~~~--------~-----~~~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~G~~~~vv~~~-~~~~ 78 (315)
T 1l9x_A 14 LVPRGSHMRPHGD--------T-----AKKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLES-AGARVVPVRLD-LTEK 78 (315)
T ss_dssp ---------------------------CCCCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHH-TTCEEEEECSS-CCHH
T ss_pred cccCccccCCCcc--------c-----CCCCEEEEECCcccccccccCcceehHHHHHHHHHH-CCCEEEEEecC-CCHH
Confidence 4566666666533 0 2479999987422110 000011233446778888 89886643321 2355
Q ss_pred HHHHHHHHHHhCCCCcEEEEeCCc-cCCCC
Q psy7342 247 EIKDKLKYWVDQSKVDLIFTSGGT-GMSPR 275 (338)
Q Consensus 247 ~I~~aL~~a~~~~~~DlVITTGGt-s~G~~ 275 (338)
.+.+. ++. +|-||.+||- .+.+.
T Consensus 79 ~i~~~----l~~--~dglil~GG~~~v~p~ 102 (315)
T 1l9x_A 79 DYEIL----FKS--INGILFPGGSVDLRRS 102 (315)
T ss_dssp HHHHH----HHH--SSEEEECCCCCCTTTC
T ss_pred HHHHH----Hhc--CCEEEEeCCCcccChh
Confidence 55443 344 7999999984 55544
No 54
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=50.81 E-value=78 Score=28.44 Aligned_cols=77 Identities=10% Similarity=-0.019 Sum_probs=54.4
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRD 276 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D 276 (338)
++++|-+.+.+. ...|-...+++.+|+. .|+++++.+.-- .++.+.+++.+. ++|+|..|.-.... .+
T Consensus 122 ~~~~vlla~~~g-----d~HdiG~~iva~~L~~-~G~~Vi~LG~~v-p~e~l~~~~~~~----~~d~V~lS~l~~~~-~~ 189 (258)
T 2i2x_B 122 TKGTVVCHVAEG-----DVHDIGKNIVTALLRA-NGYNVVDLGRDV-PAEEVLAAVQKE----KPIMLTGTALMTTT-MY 189 (258)
T ss_dssp CSCEEEEEECTT-----CCCCHHHHHHHHHHHH-TTCEEEEEEEEC-CSHHHHHHHHHH----CCSEEEEECCCTTT-TT
T ss_pred CCCeEEEEeCCC-----CccHHHHHHHHHHHHH-CCCEEEECCCCC-CHHHHHHHHHHc----CCCEEEEEeeccCC-HH
Confidence 467777766554 4567778899999999 999999998742 445665555543 48999999876543 45
Q ss_pred ChHHHHHhc
Q psy7342 277 VTPEAMNHL 285 (338)
Q Consensus 277 ~t~eal~~l 285 (338)
.+++.++.+
T Consensus 190 ~~~~~i~~l 198 (258)
T 2i2x_B 190 AFKEVNDML 198 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566666555
No 55
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=50.80 E-value=58 Score=29.48 Aligned_cols=81 Identities=6% Similarity=0.030 Sum_probs=52.0
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhC-CCCcEEEEeCCccCCCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQ-SKVDLIFTSGGTGMSPR 275 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~-~~~DlVITTGGts~G~~ 275 (338)
.+++|+++.-+.. .......-...+...+++ .|+++... ....|.+.-.+.++.++.+ .++|-||.++ . .
T Consensus 2 ~~~~Ig~i~p~~~--~~~f~~~~~~g~~~~a~~-~g~~~~~~-~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~-~----~ 72 (350)
T 3h75_A 2 SLTSVVFLNPGNS--TETFWVSYSQFMQAAARD-LGLDLRIL-YAERDPQNTLQQARELFQGRDKPDYLMLVN-E----Q 72 (350)
T ss_dssp -CCEEEEEECSCT--TCHHHHHHHHHHHHHHHH-HTCEEEEE-ECTTCHHHHHHHHHHHHHSSSCCSEEEEEC-C----S
T ss_pred CCCEEEEECCCCC--CChHHHHHHHHHHHHHHH-cCCeEEEE-ECCCCHHHHHHHHHHHHhcCCCCCEEEEeC-c----h
Confidence 4578888886532 112233334556777888 99987766 4567788778888888884 3599999875 2 2
Q ss_pred CChHHHHHhcc
Q psy7342 276 DVTPEAMNHLI 286 (338)
Q Consensus 276 D~t~eal~~l~ 286 (338)
+...+.++.+-
T Consensus 73 ~~~~~~~~~~~ 83 (350)
T 3h75_A 73 YVAPQILRLSQ 83 (350)
T ss_dssp SHHHHHHHHHT
T ss_pred hhHHHHHHHHH
Confidence 23455555543
No 56
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=50.47 E-value=89 Score=27.81 Aligned_cols=85 Identities=19% Similarity=0.087 Sum_probs=56.7
Q ss_pred HHHhhCCCceeEeecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEc--CC-------CHHHHHHHHH
Q psy7342 183 AQRCSTSMKYWELVRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCV--PD-------EMEEIKDKLK 253 (338)
Q Consensus 183 ~lLas~Gi~~v~V~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV--~D-------d~e~I~~aL~ 253 (338)
..|...|. .||+|+++-. +.-...+...|++ .|+++....-. .| +++.+.+.++
T Consensus 110 ~al~~~g~--------~rvglltpy~--------~~~~~~~~~~l~~-~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (240)
T 3ixl_A 110 NGLRALGV--------RRVALATAYI--------DDVNERLAAFLAE-ESLVPTGCRSLGITGVEAMARVDTATLVDLCV 172 (240)
T ss_dssp HHHHHTTC--------SEEEEEESSC--------HHHHHHHHHHHHH-TTCEEEEEEECCCCCHHHHHTCCHHHHHHHHH
T ss_pred HHHHHhCC--------CEEEEEeCCh--------HHHHHHHHHHHHH-CCCEEeccccCCCCCcchhhcCCHHHHHHHHH
Confidence 45555554 3678887622 2334566888999 99998765542 23 5778888888
Q ss_pred HHH-hCCCCcEEEEeCCccCCCCCChHHHHHhc
Q psy7342 254 YWV-DQSKVDLIFTSGGTGMSPRDVTPEAMNHL 285 (338)
Q Consensus 254 ~a~-~~~~~DlVITTGGts~G~~D~t~eal~~l 285 (338)
+++ +..++|.||.. .|.+..-+++.+.=+++
T Consensus 173 ~~l~~~~~adaivL~-CT~l~~l~~i~~le~~l 204 (240)
T 3ixl_A 173 RAFEAAPDSDGILLS-SGGLLTLDAIPEVERRL 204 (240)
T ss_dssp HHHHTSTTCSEEEEE-CTTSCCTTHHHHHHHHH
T ss_pred HHhhcCCCCCEEEEe-CCCCchhhhHHHHHHHh
Confidence 844 55579999877 79888877555443333
No 57
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1
Probab=50.17 E-value=20 Score=32.20 Aligned_cols=77 Identities=13% Similarity=0.263 Sum_probs=51.1
Q ss_pred EEecCCCccCCeeecCcHHHHHHHHHcc-cCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHH
Q psy7342 203 LALVSDRCFNKESEDKSGPLLAQLLQED-FQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEA 281 (338)
Q Consensus 203 IIstGdEl~~G~i~DsN~~~L~~lL~~~-~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~ea 281 (338)
|+.||=+-+.|...|.+...+ ..|... .+..-+....+|-+.....+.+.+++++.+.|+||..|=.| |..+++.|-
T Consensus 4 VLvTGF~PF~~~~~NPS~~~v-~~L~~~~~~~~~i~~~~lPv~~~~~~~~l~~~i~~~~Pd~Vi~vG~ag-gr~~i~lEr 81 (220)
T 1a2z_A 4 VLITGFEPFGGDSKNPTEQIA-KYFDRKQIGNAMVYGRVLPVSVKRATIELKRYLEEIKPEIVINLGLAP-TYSNITVER 81 (220)
T ss_dssp EEEEEECCCTTCSCCHHHHHH-HHHTTCEETTEEEEEEEECSCHHHHHHHHHHHHHHHCCSEEEEEEECT-TCSSEEEEC
T ss_pred EEEeeccCCCCCCCCcHHHHH-HHhhcccCCCeEEEEEEEEeEHHHHHHHHHHHHHHhCCCEEEEecCCC-CCceEEEEE
Confidence 677887777675555444444 445541 23333555688999999889999888765689999998444 555665443
No 58
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=50.02 E-value=43 Score=30.28 Aligned_cols=66 Identities=8% Similarity=-0.001 Sum_probs=47.7
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCE----E-EEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHA----H-ILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~----v-~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
+..||||+-.- .....|.-..-+...|++ .|+. + ..+.--..|...+.+.++++..+ ++|+||++|
T Consensus 7 ~~~~igi~q~~----~hp~ld~~~~G~~~~L~~-~G~~~g~nv~~~~~~a~gd~~~~~~~~~~l~~~-~~DlIiai~ 77 (302)
T 3lkv_A 7 KTAKVAVSQIV----EHPALDATRQGLLDGLKA-KGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGE-NPDVLVGIA 77 (302)
T ss_dssp CCEEEEEEESC----CCHHHHHHHHHHHHHHHH-TTCCBTTTEEEEEEECTTCHHHHHHHHHHHHTT-CCSEEEEES
T ss_pred CCceEEEEEee----cChhHHHHHHHHHHHHHh-hCcccCCcEEEEEEeCCCCHHHHHHHHHHHHhc-CCcEEEEcC
Confidence 56789988743 233446666677888998 8863 2 33445677889999988988876 699999886
No 59
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=49.68 E-value=14 Score=32.81 Aligned_cols=77 Identities=16% Similarity=0.184 Sum_probs=50.2
Q ss_pred EEecCCCccCCeeecCcHHHHHHHHHcc-cCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHH
Q psy7342 203 LALVSDRCFNKESEDKSGPLLAQLLQED-FQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEA 281 (338)
Q Consensus 203 IIstGdEl~~G~i~DsN~~~L~~lL~~~-~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~ea 281 (338)
|+.||=+-+.|...|.+... ...|... .+..-+....+|-+.....+.+.+++++.++|+||..|=.| |..+++.|-
T Consensus 3 VLvTGF~PF~~~~~NPS~~~-v~~L~~~~~~~~~i~~~~lPv~~~~~~~~l~~~~~~~~pd~vi~vG~a~-gr~~i~iEr 80 (208)
T 1x10_A 3 VLVTGFEPFGGEKINPTERI-AKDLDGIKIGDAQVFGRVLPVVFGKAKEVLEKTLEEIKPDIAIHVGLAP-GRSAISIER 80 (208)
T ss_dssp EEEEEECCCTTCSCCHHHHH-HHHHTTCEETTEEEEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECT-TCCSEEEEC
T ss_pred EEEEeecCCCCCCCChHHHH-HHHhhccCCCCeEEEEEEEeeEHHHHHHHHHHHHHHhCCCEEEEecCCC-CCceEEeEE
Confidence 77788777767554544444 4445541 23333445578888888888888888765689999998544 555666443
No 60
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=48.10 E-value=15 Score=30.03 Aligned_cols=39 Identities=18% Similarity=0.394 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCcEEEEeCCccC--CCC-CChHHHHHhc
Q psy7342 247 EIKDKLKYWVDQSKVDLIFTSGGTGM--SPR-DVTPEAMNHL 285 (338)
Q Consensus 247 ~I~~aL~~a~~~~~~DlVITTGGts~--G~~-D~t~eal~~l 285 (338)
.|..+|.....+.++|+|+..+++=. ... |+|.+++..+
T Consensus 101 ~i~~ai~~vak~~gy~~Vld~~~vly~~~~~~DIT~~Vi~~L 142 (143)
T 1u2m_A 101 RIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQV 142 (143)
T ss_dssp HHHHHHHHHHHHTTCSEEEEGGGEEEECTTSCBCHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCeEEEECCceeEeCCCcCchHHHHHHHh
Confidence 45566666666668999998876533 456 9999999876
No 61
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=47.83 E-value=33 Score=30.93 Aligned_cols=68 Identities=19% Similarity=0.186 Sum_probs=39.8
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
..+|+++..++ +.......+.-.-+...+++ +|+++...... ++.+...+.++.+.++ ++|.||++|.
T Consensus 5 ~~~Ig~v~~~~-~~d~~f~~~~~~gi~~~~~~-~g~~~~~~~~~-~~~~~~~~~l~~l~~~-~vdgIi~~~~ 72 (296)
T 2hqb_A 5 GGMVGLLVEDT-IDDQGWNRKAYEGLLNIHSN-LDVDVVLEEGV-NSEQKAHRRIKELVDG-GVNLIFGHGH 72 (296)
T ss_dssp -CEEEEECCCC-----CCTHHHHHHHHHHHHH-SCCEEEEECCC-CSHHHHHHHHHHHHHT-TCCEEEECST
T ss_pred CcEEEEEECCC-CCCCcHHHHHHHHHHHHHHH-hCCeEEEEeCC-CCHHHHHHHHHHHHHC-CCCEEEEcCH
Confidence 46788887532 21111222223455667788 99987654433 3444555678877765 5999999863
No 62
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis}
Probab=47.66 E-value=7.7 Score=34.79 Aligned_cols=79 Identities=20% Similarity=0.249 Sum_probs=51.4
Q ss_pred EEEecCCCccCCeeecCcHHHHHHHHHcccCCE-EEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHH
Q psy7342 202 LLALVSDRCFNKESEDKSGPLLAQLLQEDFQHA-HILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPE 280 (338)
Q Consensus 202 aIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~-v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~e 280 (338)
.|+.||=+-+.|...|.+...+..+-.. .+.. -+....+|-+.+...+.+.+++++.+.|+||..|=.| |..+++.|
T Consensus 3 ~VLvTGF~PF~~~~~NPS~~~v~~L~~~-i~~~~~i~~~~lPv~y~~~~~~l~~~~~~~~Pd~VihvG~ag-gr~~i~lE 80 (215)
T 3lac_A 3 TVLLTGFDPFGGESINPAWEVAKSLHEK-TIGEYKIISKQVPTVFHKSISVLKEYIEELAPEFIICIGQAG-GRPDITIE 80 (215)
T ss_dssp EEEEEEECCCTTCSCCHHHHHHHTTTTC-EETTEEEEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEEECT-TCSSEEEE
T ss_pred EEEEEecCCCCCCCCChHHHHHHHhccc-cCCCcEEEEEEEeeEhHHHHHHHHHHHHhhCCCeEEEeccCC-CCceEEEE
Confidence 3677887777676555444444443333 3322 3445578888888888888887765699999988655 56666655
Q ss_pred HH
Q psy7342 281 AM 282 (338)
Q Consensus 281 al 282 (338)
-.
T Consensus 81 r~ 82 (215)
T 3lac_A 81 RV 82 (215)
T ss_dssp CE
T ss_pred EE
Confidence 44
No 63
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=47.35 E-value=95 Score=26.85 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=44.7
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
+..+|+++.-... ......-...+...+++ .|+++.... ..+|.+...+.++.++.+ ++|-||..+.
T Consensus 7 ~~~~Ig~i~~~~~---~~~~~~~~~gi~~~a~~-~g~~~~~~~-~~~~~~~~~~~~~~l~~~-~vdgiI~~~~ 73 (293)
T 3l6u_A 7 KRNIVGFTIVNDK---HEFAQRLINAFKAEAKA-NKYEALVAT-SQNSRISEREQILEFVHL-KVDAIFITTL 73 (293)
T ss_dssp --CEEEEEESCSC---SHHHHHHHHHHHHHHHH-TTCEEEEEE-CSSCHHHHHHHHHHHHHT-TCSEEEEECS
T ss_pred CCcEEEEEEecCC---cHHHHHHHHHHHHHHHH-cCCEEEEEC-CCCCHHHHHHHHHHHHHc-CCCEEEEecC
Confidence 4577888875421 22233334456677888 999877653 467788888888888875 5999998764
No 64
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=46.49 E-value=18 Score=33.75 Aligned_cols=76 Identities=9% Similarity=-0.015 Sum_probs=47.5
Q ss_pred cCceEEEEecCCCc-----c----CC----ee--ecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCC
Q psy7342 197 RSTCHLLALVSDRC-----F----NK----ES--EDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKV 261 (338)
Q Consensus 197 ~~prVaIIstGdEl-----~----~G----~i--~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~ 261 (338)
+++|++|+.+|.-= . .| ++ .=||.+-+..+.++ +|+.+.....-.+++++..+++.+.+++.++
T Consensus 94 ~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~A~~-~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~ 172 (292)
T 3lou_A 94 ARPKVLIMVSKLEHCLADLLFRWKMGELKMDIVGIVSNHPDFAPLAAQ-HGLPFRHFPITADTKAQQEAQWLDVFETSGA 172 (292)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEESSSTTHHHHHH-TTCCEEECCCCSSCHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEcCCCcCHHHHHHHHHcCCCCcEEEEEEeCcHHHHHHHHH-cCCCEEEeCCCcCCHHHHHHHHHHHHHHhCC
Confidence 47899999988651 1 12 22 12333334566777 9988766544445666666666666655569
Q ss_pred cEEEEeCCccCC
Q psy7342 262 DLIFTSGGTGMS 273 (338)
Q Consensus 262 DlVITTGGts~G 273 (338)
|+||..|=.-+=
T Consensus 173 Dlivla~y~~il 184 (292)
T 3lou_A 173 ELVILARYMQVL 184 (292)
T ss_dssp SEEEESSCCSCC
T ss_pred CEEEecCchhhC
Confidence 999998854443
No 65
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1
Probab=45.60 E-value=19 Score=32.01 Aligned_cols=75 Identities=13% Similarity=0.221 Sum_probs=52.2
Q ss_pred EEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHH
Q psy7342 203 LALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEA 281 (338)
Q Consensus 203 IIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~ea 281 (338)
|+.||=+-+.|...|.+...+..+-.. . .++ ....+|-+.....+.+.+++++.+.|+||..|=.| |..+++.|-
T Consensus 3 VLvTGF~PF~~~~~NPS~~~v~~L~~~-i-~~i-~~~~lPv~~~~~~~~l~~~~~~~~Pd~vi~vG~a~-gr~~i~~Er 77 (206)
T 1iu8_A 3 ILLTGFEPFGGDDKNPTMDIVEALSER-I-PEV-VGEILPVSFKRAREKLLKVLDDVRPDITINLGLAP-GRTHISVER 77 (206)
T ss_dssp EEEEEECCCTTCSCCHHHHHHHHHHHH-C-TTE-EEEEECSCHHHHHHHHHHHHHHHCCSEEEEEEECT-TCSSEEEEC
T ss_pred EEEEeecCCCCCCCCcHHHHHHHhccc-e-eEE-EEEEEEeEHHHHHHHHHHHHHHhCCCEEEEcccCC-CCceEEEEE
Confidence 677887777776666555555555444 4 443 34478999999889999888765689999998544 555666443
No 66
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=44.95 E-value=19 Score=33.52 Aligned_cols=77 Identities=8% Similarity=0.026 Sum_probs=48.0
Q ss_pred cCceEEEEecCCCc-----c----CC----ee--ecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCC
Q psy7342 197 RSTCHLLALVSDRC-----F----NK----ES--EDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKV 261 (338)
Q Consensus 197 ~~prVaIIstGdEl-----~----~G----~i--~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~ 261 (338)
+++|++|+.+|+-= . .| ++ .=||.+-+..+.++ +|+.+.....-++++++..+.+.+.+++.++
T Consensus 89 ~~~ri~vl~Sg~g~~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~A~~-~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~ 167 (286)
T 3n0v_A 89 HRPKVVIMVSKADHCLNDLLYRQRIGQLGMDVVAVVSNHPDLEPLAHW-HKIPYYHFALDPKDKPGQERKVLQVIEETGA 167 (286)
T ss_dssp CCCEEEEEESSCCHHHHHHHHHHHTTSSCCEEEEEEESSSTTHHHHHH-TTCCEEECCCBTTBHHHHHHHHHHHHHHHTC
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHCCCCCcEEEEEEeCcHHHHHHHHH-cCCCEEEeCCCcCCHHHHHHHHHHHHHhcCC
Confidence 36899999998651 1 22 22 12343445566777 9988766544445666656666666655569
Q ss_pred cEEEEeCCccCCC
Q psy7342 262 DLIFTSGGTGMSP 274 (338)
Q Consensus 262 DlVITTGGts~G~ 274 (338)
|+||..|=.-+=+
T Consensus 168 Dlivla~y~~il~ 180 (286)
T 3n0v_A 168 ELVILARYMQVLS 180 (286)
T ss_dssp SEEEESSCCSCCC
T ss_pred CEEEecccccccC
Confidence 9999988554433
No 67
>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus}
Probab=44.41 E-value=16 Score=32.15 Aligned_cols=77 Identities=16% Similarity=0.122 Sum_probs=48.1
Q ss_pred EEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHHHH
Q psy7342 203 LALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAM 282 (338)
Q Consensus 203 IIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~eal 282 (338)
|+.||=+-+.|...|.+...+..+-.. .+..-+....+|=+ +...+.+.+++++.+.|+||..|=.| |..+++.|-.
T Consensus 2 VLvTGF~PF~~~~~NPS~~~v~~L~~~-i~~~~i~~~~lPv~-~~~~~~l~~~~~~~~pd~vi~~G~a~-~r~~i~~Er~ 78 (192)
T 2ebj_A 2 ILVTGFEPFGSLEHNPSQALLDLLPSE-VDGKPLRKAVLPVD-AEALGEALEDLHREGPKAVLHLGLAE-DRPVLTLERL 78 (192)
T ss_dssp EEEEEECCCTTCSCCHHHHGGGGSCSE-ETTEEEEEEEECSC-HHHHHHHHHHHHTTCCSEEEEEEECT-TCSSEEEECE
T ss_pred EEEEeecCCCCCCCChHHHHHHHhhcc-cCCcEEEEEEeccc-ccHHHHHHHHHHHhCCCEEEEeccCC-CCceEEeEEE
Confidence 567777666665544444444333333 33333444457877 88888899998876799999997433 5556664443
No 68
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=44.35 E-value=76 Score=28.10 Aligned_cols=68 Identities=13% Similarity=0.104 Sum_probs=46.7
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
++.+|+++...-. ...+..-...+...+++ .|+++.... ..+|.+.-.+.++.++.+ ++|-||..+-.
T Consensus 2 ~~~~Igvi~~~~~---~~~~~~~~~gi~~~a~~-~g~~~~~~~-~~~~~~~~~~~i~~~~~~-~vdgiIi~~~~ 69 (330)
T 3uug_A 2 DKGSVGIAMPTKS---SARWIDDGNNIVKQLQE-AGYKTDLQY-ADDDIPNQLSQIENMVTK-GVKVLVIASID 69 (330)
T ss_dssp CCCEEEEEECCSS---STHHHHHHHHHHHHHHH-TTCEEEEEE-CTTCHHHHHHHHHHHHHH-TCSEEEECCSS
T ss_pred CCcEEEEEeCCCc---chHHHHHHHHHHHHHHH-cCCEEEEee-CCCCHHHHHHHHHHHHHc-CCCEEEEEcCC
Confidence 3567888875421 22233334556778888 999877665 567788888888888876 49999987643
No 69
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=44.06 E-value=21 Score=33.50 Aligned_cols=81 Identities=9% Similarity=0.075 Sum_probs=51.5
Q ss_pred cCceEEEEecCCCc-----c----CC----ee--ecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCC
Q psy7342 197 RSTCHLLALVSDRC-----F----NK----ES--EDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKV 261 (338)
Q Consensus 197 ~~prVaIIstGdEl-----~----~G----~i--~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~ 261 (338)
+++|++|+.+|+-= . .| ++ .=||.+-+..+.++ +|+.+.....-.++.++..+++.+.+++.++
T Consensus 104 ~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~I~~Visn~~~~~~~A~~-~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~ 182 (302)
T 3o1l_A 104 QKKRVVLMASRESHCLADLLHRWHSDELDCDIACVISNHQDLRSMVEW-HDIPYYHVPVDPKDKEPAFAEVSRLVGHHQA 182 (302)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHTTCSCSEEEEEEESSSTTHHHHHT-TTCCEEECCCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEEEeCCchhHHHHHHHHHCCCCCcEEEEEEECcHHHHHHHHH-cCCCEEEcCCCcCCHHHHHHHHHHHHHHhCC
Confidence 47899999988641 1 22 22 11333335567777 9988766544444555555566666665669
Q ss_pred cEEEEeCCccCCCCCCh
Q psy7342 262 DLIFTSGGTGMSPRDVT 278 (338)
Q Consensus 262 DlVITTGGts~G~~D~t 278 (338)
|+||..|=.-+=+.+++
T Consensus 183 DliVlagym~IL~~~~l 199 (302)
T 3o1l_A 183 DVVVLARYMQILPPQLC 199 (302)
T ss_dssp SEEEESSCCSCCCTTHH
T ss_pred CEEEHhHhhhhcCHHHH
Confidence 99999987666665554
No 70
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=43.21 E-value=8.9 Score=32.70 Aligned_cols=50 Identities=16% Similarity=0.227 Sum_probs=38.3
Q ss_pred HHHHHHHcccCCEEEEEEEcCC----CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 222 LLAQLLQEDFQHAHILKTCVPD----EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 222 ~L~~lL~~~~G~~v~~~~iV~D----d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
.|.+.|++ .|+++.+++.-.+ |+-.+...+.+++.+ +|.-|...|||.|-
T Consensus 24 ~i~~~L~~-~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~~--~d~GIliCGTGiG~ 77 (148)
T 4em8_A 24 FLSAYLRD-LGCEVFDCGCDPKEHSVDYPDYVHDVVREVSD--TSFGVLICGTGIGM 77 (148)
T ss_dssp HHHHHHHH-TTCEEEECCCCTTCSCCCGGGGTHHHHTTCBT--TBEEEEEESSSHHH
T ss_pred HHHHHHHH-CCCEEEEeCCCCCCCCCChHHHHHHHHHHHHH--hCeEEEEccCcHHH
Confidence 45567788 9999999987533 466677777777763 89999999999874
No 71
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=40.91 E-value=82 Score=27.85 Aligned_cols=66 Identities=6% Similarity=-0.104 Sum_probs=41.7
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
.+|+++.-... . ....-...+...+++ .|+++.....-.+|.+.-.+.++.++.+ ++|.||..+..
T Consensus 2 ~~Ig~i~~~~~---~-~~~~~~~gi~~~~~~-~g~~~~~~~~~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~ 67 (313)
T 2h3h_A 2 LTIGVIGKSVH---P-YWSQVEQGVKAAGKA-LGVDTKFFVPQKEDINAQLQMLESFIAE-GVNGIAIAPSD 67 (313)
T ss_dssp CEEEEECSCSS---H-HHHHHHHHHHHHHHH-HTCEEEEECCSSSCHHHHHHHHHHHHHT-TCSEEEECCSS
T ss_pred eEEEEEeCCCc---H-HHHHHHHHHHHHHHH-cCCEEEEECCCCCCHHHHHHHHHHHHHc-CCCEEEEeCCC
Confidence 46777753211 1 222233445667788 8998765432356777777888888765 59999987643
No 72
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9
Probab=39.85 E-value=26 Score=31.01 Aligned_cols=69 Identities=10% Similarity=0.072 Sum_probs=45.4
Q ss_pred eEEEEecCCCccCCeeecC--cHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhC--CCCcEEEEeCCc
Q psy7342 200 CHLLALVSDRCFNKESEDK--SGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQ--SKVDLIFTSGGT 270 (338)
Q Consensus 200 rVaIIstGdEl~~G~i~Ds--N~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~--~~~DlVITTGGt 270 (338)
...|+..||.+..|.-... +..+ ..+-+. +|..+...++-.+.-..+...+.+.+.. ..+|+|+...|+
T Consensus 26 ~~~iv~lGDSiT~G~~~~~~~~~~w-~~l~~~-l~~~v~N~G~~G~tt~~~~~~~~~~l~~~~~~pd~V~I~~G~ 98 (274)
T 3bzw_A 26 GKKVGYIGDSITDPNCYGDNIKKYW-DFLKEW-LGITPFVYGISGRQWDDVPRQAEKLKKEHGGEVDAILVFMGT 98 (274)
T ss_dssp TCEEEEEESTTTCTTTTGGGCCCHH-HHHHHH-HCCEEEECCCTTCCGGGHHHHHHHHHHHHTTTCCEEEEECCH
T ss_pred CCEEEEEecCcccCCCCCCccCccH-HHHHHH-hCCeEEEeecCCCCHHHHHHHHHHHHhccCCCCCEEEEEEec
Confidence 3567889999987643322 2333 333344 7889999999888855555555554431 248999988887
No 73
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=39.79 E-value=95 Score=27.16 Aligned_cols=67 Identities=6% Similarity=-0.161 Sum_probs=44.7
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcC-CCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVP-DEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~-Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
+.+|+++.-+.. ......-...+...+++ .|+++.....-. +|.+.-.+.++.++.+ ++|-||..+.
T Consensus 3 ~~~Igvi~~~~~---~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~~~~~~~~i~~l~~~-~vdgiii~~~ 70 (297)
T 3rot_A 3 RDKYYLITHGSQ---DPYWTSLFQGAKKAAEE-LKVDLQILAPPGANDVPKQVQFIESALAT-YPSGIATTIP 70 (297)
T ss_dssp CCEEEEECSCCC---SHHHHHHHHHHHHHHHH-HTCEEEEECCSSSCCHHHHHHHHHHHHHT-CCSEEEECCC
T ss_pred eEEEEEEecCCC---CchHHHHHHHHHHHHHH-hCcEEEEECCCCcCCHHHHHHHHHHHHHc-CCCEEEEeCC
Confidence 567888875421 22223334456677888 999887554211 4888888899988876 5999998654
No 74
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=39.10 E-value=61 Score=29.43 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=40.6
Q ss_pred cCceEEEEec-CCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 197 RSTCHLLALV-SDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 197 ~~prVaIIst-GdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
++.+|++|.. |+ +........--.-+...+++ +|+++..... .++ +...+.++.+.++ ++|.||++|.
T Consensus 3 ~~~~Ig~v~~~g~-~~d~~f~~~~~~Gi~~~~~~-~g~~~~~~~~-~~~-~~~~~~l~~l~~~-~~dgIi~~~~ 71 (318)
T 2fqx_A 3 GDFVVGMVTDSGD-IDDKSFNQQVWEGISRFAQE-NNAKCKYVTA-STD-AEYVPSLSAFADE-NMGLVVACGS 71 (318)
T ss_dssp CCCEEEEEESSSC-TTSSSHHHHHHHHHHHHHHH-TTCEEEEEEC-CSG-GGHHHHHHHHHHT-TCSEEEEEST
T ss_pred CCcEEEEEEcCCC-CCCccHHHHHHHHHHHHHHH-hCCeEEEEeC-CCH-HHHHHHHHHHHHc-CCCEEEECCh
Confidence 3467888873 44 11111222223455667788 9998766554 233 3345677877765 5999999863
No 75
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=39.05 E-value=1.9e+02 Score=24.86 Aligned_cols=68 Identities=9% Similarity=-0.022 Sum_probs=46.1
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
+.+|+++..... ...+..--..+...+++ .|+.+... ...+|.+.-.+.++.+..+ ++|-||..+..+
T Consensus 15 ~~~Igvi~~~~~---~~~~~~~~~gi~~~a~~-~g~~~~~~-~~~~~~~~~~~~~~~l~~~-~vdgiIi~~~~~ 82 (298)
T 3tb6_A 15 NKTIGVLTTYIS---DYIFPSIIRGIESYLSE-QGYSMLLT-STNNNPDNERRGLENLLSQ-HIDGLIVEPTKS 82 (298)
T ss_dssp CCEEEEEESCSS---STTHHHHHHHHHHHHHH-TTCEEEEE-ECTTCHHHHHHHHHHHHHT-CCSEEEECCSST
T ss_pred CceEEEEeCCCC---chHHHHHHHHHHHHHHH-CCCEEEEE-eCCCChHHHHHHHHHHHHC-CCCEEEEecccc
Confidence 367888875422 12223334556777888 99987765 3457778778888888775 599999987543
No 76
>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A
Probab=37.66 E-value=40 Score=29.53 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=40.6
Q ss_pred HHHHHHHcc-cCCEEEEEEEcC---CCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 222 LLAQLLQED-FQHAHILKTCVP---DEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 222 ~L~~lL~~~-~G~~v~~~~iV~---Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
.|.+.|++. .|+++++++.-. .|+-.+...+.+++.++.+|.-|...|||.|-
T Consensus 39 ~i~~~L~~~~~G~eV~D~G~~s~~s~DYPd~a~~vA~~V~~g~~d~GIliCGTGiG~ 95 (179)
T 3k7p_A 39 NLILYVKEAGDEFVPVYCGPKTAESVDYPDFASRVAEMVARKEVEFGVLAAGSGIGM 95 (179)
T ss_dssp HHHHHHHHTCTTEEEEECSCSSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHH
T ss_pred HHHHHHHhcCCCCeEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEccCcHHH
Confidence 344455432 689999998754 35788888888888877799999999999884
No 77
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=37.41 E-value=1.8e+02 Score=25.00 Aligned_cols=69 Identities=10% Similarity=-0.005 Sum_probs=45.4
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
+..+|+++.-.- ....+..--..+...+++ .|+.+.... ..++.+.-.+.++.+..+ ++|-||..+...
T Consensus 6 ~s~~Igvi~~~~---~~~~~~~~~~gi~~~~~~-~g~~~~~~~-~~~~~~~~~~~~~~l~~~-~vdgiIi~~~~~ 74 (276)
T 3jy6_A 6 SSKLIAVIVANI---DDYFSTELFKGISSILES-RGYIGVLFD-ANADIEREKTLLRAIGSR-GFDGLILQSFSN 74 (276)
T ss_dssp CCCEEEEEESCT---TSHHHHHHHHHHHHHHHT-TTCEEEEEE-CTTCHHHHHHHHHHHHTT-TCSEEEEESSCC
T ss_pred CCcEEEEEeCCC---CchHHHHHHHHHHHHHHH-CCCEEEEEe-CCCCHHHHHHHHHHHHhC-CCCEEEEecCCc
Confidence 456788887432 122223334456677888 999877654 466777777777877765 599999987543
No 78
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=37.40 E-value=78 Score=31.62 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=38.4
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
.++|.||-.|+ .+...+...|++ .|..+..... ..+.+.|++ . . +|-||.+||-+
T Consensus 7 ~~~IlIlD~g~---------~~~~~i~r~lr~-~G~~~~i~p~-~~~~~~i~~----~--~--~dgiILsGGp~ 61 (525)
T 1gpm_A 7 KHRILILDFGS---------QYTQLVARRVRE-LGVYCELWAW-DVTEAQIRD----F--N--PSGIILSGGPE 61 (525)
T ss_dssp SSEEEEEECSC---------TTHHHHHHHHHH-TTCEEEEEES-CCCHHHHHH----H--C--CSEEEECCCSS
T ss_pred CCEEEEEECCC---------ccHHHHHHHHHH-CCCEEEEEEC-CCCHHHHhc----c--C--CCEEEECCcCc
Confidence 47899998775 467889999999 9987654332 234555543 2 3 79999999864
No 79
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=36.89 E-value=53 Score=28.72 Aligned_cols=67 Identities=13% Similarity=0.010 Sum_probs=42.4
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
..+|+++..... ......-...+...+++ .|+++.......+|.+...+.++.++.+ ++|.||..+.
T Consensus 4 ~~~Ig~i~~~~~---~~~~~~~~~g~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~~-~vdgiii~~~ 70 (303)
T 3d02_A 4 EKTVVNISKVDG---MPWFNRMGEGVVQAGKE-FNLNASQVGPSSTDAPQQVKIIEDLIAR-KVDAITIVPN 70 (303)
T ss_dssp CEEEEEECSCSS---CHHHHHHHHHHHHHHHH-TTEEEEEECCSSSCHHHHHHHHHHHHHT-TCSEEEECCS
T ss_pred ceEEEEEeccCC---ChHHHHHHHHHHHHHHH-cCCEEEEECCCCCCHHHHHHHHHHHHHc-CCCEEEEecC
Confidence 456787763211 11222223455667888 8988764443456788888888888775 5999998764
No 80
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=35.16 E-value=1.4e+02 Score=25.80 Aligned_cols=69 Identities=10% Similarity=0.094 Sum_probs=46.0
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
+..+|+++..... ...+..--..+...+++ .|+++... ...+|.+...+.++.+..+ ++|-||..+...
T Consensus 7 ~~~~Igvv~~~~~---~~~~~~~~~gi~~~a~~-~g~~~~~~-~~~~~~~~~~~~~~~l~~~-~vdgiIi~~~~~ 75 (291)
T 3egc_A 7 RSNVVGLIVSDIE---NVFFAEVASGVESEARH-KGYSVLLA-NTAEDIVREREAVGQFFER-RVDGLILAPSEG 75 (291)
T ss_dssp CCCEEEEEESCTT---SHHHHHHHHHHHHHHHH-TTCEEEEE-ECTTCHHHHHHHHHHHHHT-TCSEEEECCCSS
T ss_pred CCcEEEEEECCCc---chHHHHHHHHHHHHHHH-CCCEEEEE-eCCCCHHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence 4567888874421 22223334456677888 99987755 4566777777888877765 599999877544
No 81
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=34.89 E-value=1.8e+02 Score=26.17 Aligned_cols=73 Identities=16% Similarity=0.008 Sum_probs=49.7
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEE--c-------CCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTC--V-------PDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~i--V-------~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
.||+|+++-.. .....+...+++ .|+++..... + ..+++.+.+.++++ .+.++|.||..-.
T Consensus 147 ~rvgvltp~~~--------~~~~~~~~~l~~-~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l-~~~gadaIvLg~C 216 (273)
T 2xed_A 147 QRVALVTPYMR--------PLAEKVVAYLEA-EGFTISDWRALEVADNTEVGCIPGEQVMAAARSL-DLSEVDALVISCA 216 (273)
T ss_dssp CEEEEEECSCH--------HHHHHHHHHHHH-TTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHS-CCTTCSEEEEESS
T ss_pred CeEEEEcCChh--------hhHHHHHHHHHH-CCCEEeccccCCCccchhhcccCHHHHHHHHHHH-hhCCCCEEEEcCC
Confidence 47888875332 234577888999 9999765443 2 22567788888877 4446999988768
Q ss_pred ccCCCCCChHHH
Q psy7342 270 TGMSPRDVTPEA 281 (338)
Q Consensus 270 ts~G~~D~t~ea 281 (338)
|.+..-++..+.
T Consensus 217 T~l~~~~~~~~l 228 (273)
T 2xed_A 217 VQMPSLPLVETA 228 (273)
T ss_dssp SSSCCTTHHHHH
T ss_pred CCcchHHhHHHH
Confidence 888876655443
No 82
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=34.71 E-value=71 Score=27.15 Aligned_cols=46 Identities=9% Similarity=0.003 Sum_probs=32.9
Q ss_pred eEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 200 CHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 200 rVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
+|+||--|. .|-..+...|++ .|+++. ++ +|++.| .+ +|.||..||
T Consensus 4 ~I~iiD~g~---------~n~~si~~al~~-~G~~~~---v~-~~~~~l--------~~--~D~lilPG~ 49 (211)
T 4gud_A 4 NVVIIDTGC---------ANISSVKFAIER-LGYAVT---IS-RDPQVV--------LA--ADKLFLPGV 49 (211)
T ss_dssp CEEEECCCC---------TTHHHHHHHHHH-TTCCEE---EE-CCHHHH--------HH--CSEEEECCC
T ss_pred EEEEEECCC---------ChHHHHHHHHHH-CCCEEE---EE-CCHHHH--------hC--CCEEEECCC
Confidence 577776554 478889999999 999876 33 345443 22 699998885
No 83
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=33.93 E-value=1.2e+02 Score=26.26 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=44.3
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
+..+|+++..+.. ......-...+...+++ .|+++.... ..+|.+.-.+.++.++.+ ++|-||..+.
T Consensus 4 ~~~~Ig~i~~~~~---~~~~~~~~~gi~~~a~~-~g~~~~~~~-~~~~~~~~~~~~~~l~~~-~vdgiIi~~~ 70 (291)
T 3l49_A 4 EGKTIGITAIGTD---HDWDLKAYQAQIAEIER-LGGTAIALD-AGRNDQTQVSQIQTLIAQ-KPDAIIEQLG 70 (291)
T ss_dssp TTCEEEEEESCCS---SHHHHHHHHHHHHHHHH-TTCEEEEEE-CTTCHHHHHHHHHHHHHH-CCSEEEEESS
T ss_pred CCcEEEEEeCCCC---ChHHHHHHHHHHHHHHH-cCCEEEEEc-CCCCHHHHHHHHHHHHHc-CCCEEEEeCC
Confidence 4567888875321 12222234456677888 999887664 466777777788887775 5999998764
No 84
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=33.92 E-value=98 Score=27.40 Aligned_cols=66 Identities=8% Similarity=-0.016 Sum_probs=43.9
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCC----EEE-EEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQH----AHI-LKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~----~v~-~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
+..+|||+.. ..+..++.--..+...+++ .|+ .+. .+.-..+|++...+.++.+.++ ++|.||++|
T Consensus 7 ~t~~IGvi~~----~~~p~~~~~~~gi~~~l~~-~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~-~vDgII~~~ 77 (302)
T 2qh8_A 7 KTAKVAVSQI----VEHPALDATRQGLLDGLKA-KGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGE-NPDVLVGIA 77 (302)
T ss_dssp CCEEEEEEES----SCCHHHHHHHHHHHHHHHH-TTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHT-CCSEEEEES
T ss_pred CCcEEEEEEe----ccChhHHHHHHHHHHHHHH-cCCCCCCceEEEEecCCCCHHHHHHHHHHHHhC-CCCEEEECC
Confidence 4577888742 2233334444556778888 888 432 2334567888888888888765 599999986
No 85
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae}
Probab=33.56 E-value=47 Score=27.87 Aligned_cols=69 Identities=10% Similarity=-0.004 Sum_probs=45.8
Q ss_pred EEEecCCCccC-CeeecC---cH--HHHHHHHHccc--CCEEEEEEEcCCCHHHHHHHHHHHHhC-CCCcEEEEeCCc
Q psy7342 202 LLALVSDRCFN-KESEDK---SG--PLLAQLLQEDF--QHAHILKTCVPDEMEEIKDKLKYWVDQ-SKVDLIFTSGGT 270 (338)
Q Consensus 202 aIIstGdEl~~-G~i~Ds---N~--~~L~~lL~~~~--G~~v~~~~iV~Dd~e~I~~aL~~a~~~-~~~DlVITTGGt 270 (338)
.|+..||.+.. |.-.+. ++ .....+|.+.+ ++.+...++-.+....+...+.+.+.. ..+|+||...|+
T Consensus 5 ~i~~~GDSit~~g~~~~~~~~~g~~~~~~~~l~~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~~~~~pd~vvi~~G~ 82 (240)
T 3mil_A 5 KFLLFGDSITEFAFNTRPIEDGKDQYALGAALVNEYTRKMDILQRGFKGYTSRWALKILPEILKHESNIVMATIFLGA 82 (240)
T ss_dssp EEEEEESHHHHTTTCSCCSTTCCCCCCHHHHHHHHTTTTEEEEEEECTTCCHHHHHHHHHHHHHHCCCEEEEEEECCT
T ss_pred cEEEEccchhhhhcCcccccccchHhHHHHHHHHHhccceEEEecCcCcccHHHHHHHHHHHhcccCCCCEEEEEeec
Confidence 46778998875 533221 11 12333333313 578999999999988888888887753 358999988776
No 86
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=33.27 E-value=1.3e+02 Score=25.81 Aligned_cols=70 Identities=6% Similarity=-0.067 Sum_probs=41.3
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEc-CCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCV-PDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV-~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
+..+|+++.-...- .......--..+...+++ .|+++.....- .+|.+...+.++.++.+ ++|-||..+.
T Consensus 4 ~~~~Ig~v~~~~~~-~~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~-~vdgii~~~~ 74 (289)
T 3brs_A 4 KQYYMICIPKVLDD-SSDFWSVLVEGAQMAAKE-YEIKLEFMAPEKEEDYLVQNELIEEAIKR-KPDVILLAAA 74 (289)
T ss_dssp -CCEEEEECSCCCS-SSHHHHHHHHHHHHHHHH-HTCEEEECCCSSTTCHHHHHHHHHHHHHT-CCSEEEECCS
T ss_pred CCcEEEEEeCCCCC-CchHHHHHHHHHHHHHHH-cCCEEEEecCCCCCCHHHHHHHHHHHHHh-CCCEEEEeCC
Confidence 34678887642110 011122223345667788 89887654322 45777777788887765 5999998764
No 87
>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii}
Probab=33.08 E-value=23 Score=31.65 Aligned_cols=77 Identities=18% Similarity=0.172 Sum_probs=47.0
Q ss_pred EEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCChHH
Q psy7342 203 LALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPE 280 (338)
Q Consensus 203 IIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~t~e 280 (338)
|+.||=+-+.|...|.+...+..+-....+..-+....+|=..+...+.+.+++++.+.|+||..| .+-|..+++.|
T Consensus 5 VLvTGF~PF~~~~~NPS~~~v~~L~~~~~~~~~i~~~~lPv~~~~~~~~l~~~i~~~~Pd~vi~~G-~a~gr~~i~~E 81 (216)
T 4gxh_A 5 ILVTAFDPFGGEAINPSWEAIKPLQGSQVFGANIEICQIPCIFDTSLEHLYAAVDKYQPELVISVG-QAGGRTNITVE 81 (216)
T ss_dssp EEEEEECCCTTSSSCHHHHHHGGGTTCEETTEEEEEEEECSSTTHHHHHHHHHHHHHCCSEEEEEE-ECTTCSSEEEE
T ss_pred EEEeeccCCCCCCCChhHHHHHhhhcccCCCceEEEEecCccHHHHHHHHHHHHHhhCCCEEEEec-cCCCCCcceeE
Confidence 677887766665555444444433322122223444567877777778888888766699999885 44455556544
No 88
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=31.95 E-value=1.9e+02 Score=25.23 Aligned_cols=46 Identities=7% Similarity=0.042 Sum_probs=27.3
Q ss_pred HHHHHcccCCEEEEEEEc-CCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 224 AQLLQEDFQHAHILKTCV-PDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 224 ~~lL~~~~G~~v~~~~iV-~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
..+.++ +|+.+.....- -.+.++..+.+.+.+.+.++|+||+.|=.
T Consensus 43 ~~~A~~-~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~ 89 (209)
T 1meo_A 43 LDKAER-AGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFM 89 (209)
T ss_dssp HHHHHH-TTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred HHHHHH-cCCCEEEECccccCchhhhhHHHHHHHHhcCCCEEEEcchh
Confidence 355666 78776543321 13444555555555555569999999843
No 89
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=31.79 E-value=51 Score=27.48 Aligned_cols=48 Identities=6% Similarity=-0.000 Sum_probs=32.5
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
+|+|+|+..- .|-..+..+|++ .|+++... +++. .+++ +|.||.+||-
T Consensus 2 ~p~Igi~~~~----------~~~~~~~~~l~~-~G~~~~~~---~~~~---------~l~~--~dglil~GG~ 49 (191)
T 2ywd_A 2 RGVVGVLALQ----------GDFREHKEALKR-LGIEAKEV---RKKE---------HLEG--LKALIVPGGE 49 (191)
T ss_dssp -CCEEEECSS----------SCHHHHHHHHHT-TTCCCEEE---CSGG---------GGTT--CSEEEECSSC
T ss_pred CcEEEEEecC----------CchHHHHHHHHH-CCCEEEEe---CChh---------hhcc--CCEEEECCCC
Confidence 5889999742 244557888999 99876643 4321 2344 8999999993
No 90
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=31.44 E-value=2.1e+02 Score=24.53 Aligned_cols=65 Identities=6% Similarity=-0.058 Sum_probs=40.9
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
.+|+++.-.. .......-...+...+++ .|+++.... ..+|.+.-.+.++.++.+ ++|-||..+.
T Consensus 3 ~~Ig~i~~~~---~~~~~~~~~~gi~~~~~~-~g~~~~~~~-~~~~~~~~~~~~~~l~~~-~vdgiI~~~~ 67 (290)
T 2fn9_A 3 GKMAIVISTL---NNPWFVVLAETAKQRAEQ-LGYEATIFD-SQNDTAKESAHFDAIIAA-GYDAIIFNPT 67 (290)
T ss_dssp CEEEEEESCS---SSHHHHHHHHHHHHHHHH-TTCEEEEEE-CTTCHHHHHHHHHHHHHT-TCSEEEECCS
T ss_pred eEEEEEeCCC---CChHHHHHHHHHHHHHHH-cCCEEEEeC-CCCCHHHHHHHHHHHHHc-CCCEEEEecC
Confidence 4577776321 111222233455667888 999876543 356777777788887765 5999998753
No 91
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=31.15 E-value=1.1e+02 Score=27.02 Aligned_cols=65 Identities=12% Similarity=-0.097 Sum_probs=42.4
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCC---EEE-EEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQH---AHI-LKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~---~v~-~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
..+|||+.. .....++.--..+...+++ .|+ .+. .+.-...|++...+.++.+.++ ++|.||++|
T Consensus 2 ~~~Igvi~~----~~~p~~~~i~~gi~~~l~~-~gy~g~~v~l~~~~~~~~~~~~~~~~~~l~~~-~vDgII~~~ 70 (295)
T 3lft_A 2 NAKIGVLQF----VSHPSLDLIYKGIQDGLAE-EGYKDDQVKIDFMNSEGDQSKVATMSKQLVAN-GNDLVVGIA 70 (295)
T ss_dssp CEEEEEEEC----SCCHHHHHHHHHHHHHHHH-TTCCGGGEEEEEEECTTCHHHHHHHHHHHTTS-SCSEEEEES
T ss_pred ceEEEEEEc----cCChhHHHHHHHHHHHHHH-cCCCCCceEEEEecCCCCHHHHHHHHHHHHhc-CCCEEEECC
Confidence 356787742 1223333344556777888 898 643 2334567788888888887765 599999986
No 92
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=31.03 E-value=46 Score=29.45 Aligned_cols=45 Identities=18% Similarity=0.032 Sum_probs=28.4
Q ss_pred HHHHcccCCEEEEEEEcC-CCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 225 QLLQEDFQHAHILKTCVP-DEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 225 ~lL~~~~G~~v~~~~iV~-Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
.+.++ +|+.+.....-. +++++..+.+.+.+++.++|+||+.|=.
T Consensus 51 ~~A~~-~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 96 (209)
T 4ds3_A 51 AKAEA-AGIATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYM 96 (209)
T ss_dssp HHHHH-TTCCEEECCGGGSSSHHHHHHHHHHHHHHHCCSEEEESSCC
T ss_pred HHHHH-cCCCEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 46667 888766443211 3565555666666655569999998843
No 93
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=30.64 E-value=1.5e+02 Score=25.41 Aligned_cols=66 Identities=8% Similarity=0.021 Sum_probs=42.1
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
+..+|+++...-. ...+..-...+...+++ .|+.+... ...+|.+.-.+.++.+..+ ++|-||..+
T Consensus 7 ~~~~Ig~i~~~~~---~~~~~~~~~gi~~~~~~-~g~~~~~~-~~~~~~~~~~~~~~~l~~~-~~dgiIi~~ 72 (277)
T 3e61_A 7 KSKLIGLLLPDMS---NPFFTLIARGVEDVALA-HGYQVLIG-NSDNDIKKAQGYLATFVSH-NCTGMISTA 72 (277)
T ss_dssp ---CEEEEESCTT---SHHHHHHHHHHHHHHHH-TTCCEEEE-ECTTCHHHHHHHHHHHHHT-TCSEEEECG
T ss_pred CCCEEEEEECCCC---CHHHHHHHHHHHHHHHH-CCCEEEEE-eCCCCHHHHHHHHHHHHhC-CCCEEEEec
Confidence 4566888764321 22223334556677888 99987754 4566777777788877765 599999977
No 94
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=30.40 E-value=35 Score=28.99 Aligned_cols=53 Identities=15% Similarity=0.076 Sum_probs=33.1
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCC
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMS 273 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G 273 (338)
+++|+|+..++- ..+ ..+...|++ .|+++.. ++.+ +.+++ +|.||.+||-+..
T Consensus 2 ~~~i~il~~~~~-----~~~---~~~~~~l~~-~g~~~~~---~~~~---------~~~~~--~d~lil~Gg~~~~ 54 (213)
T 3d54_D 2 KPRACVVVYPGS-----NCD---RDAYHALEI-NGFEPSY---VGLD---------DKLDD--YELIILPGGFSYG 54 (213)
T ss_dssp CCEEEEECCTTE-----EEH---HHHHHHHHT-TTCEEEE---ECTT---------CCCSS--CSEEEECEECGGG
T ss_pred CcEEEEEEcCCC-----Ccc---HHHHHHHHH-CCCEEEE---EecC---------CCccc--CCEEEECCCCchh
Confidence 367888875542 100 235788888 8987654 3433 12333 8999999997643
No 95
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=30.16 E-value=80 Score=28.21 Aligned_cols=49 Identities=10% Similarity=0.005 Sum_probs=30.0
Q ss_pred HHHHHHcccCCEEEEEEEcC-CCHHHHHHHHHHHHhCCCCcEEEEeCCccC
Q psy7342 223 LAQLLQEDFQHAHILKTCVP-DEMEEIKDKLKYWVDQSKVDLIFTSGGTGM 272 (338)
Q Consensus 223 L~~lL~~~~G~~v~~~~iV~-Dd~e~I~~aL~~a~~~~~~DlVITTGGts~ 272 (338)
...+.++ +|+.+.....-. .+.++..+.+.+.+.+.++|+||+.|=.-+
T Consensus 64 ~~~~A~~-~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~~I 113 (229)
T 3auf_A 64 GLERARR-AGVDALHMDPAAYPSRTAFDAALAERLQAYGVDLVCLAGYMRL 113 (229)
T ss_dssp HHHHHHH-TTCEEEECCGGGSSSHHHHHHHHHHHHHHTTCSEEEESSCCSC
T ss_pred HHHHHHH-cCCCEEEECcccccchhhccHHHHHHHHhcCCCEEEEcChhHh
Confidence 3556777 888766433322 345555555555565556999999874333
No 96
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=30.15 E-value=2.2e+02 Score=24.68 Aligned_cols=67 Identities=16% Similarity=0.124 Sum_probs=42.5
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
+..+|+++...- ....+..--..+...+++ .|+.+... ...+|.+...+.++.+..+ ++|-||..+.
T Consensus 15 ~s~~Igvi~~~~---~~~~~~~~~~gi~~~a~~-~g~~~~~~-~~~~~~~~~~~~~~~l~~~-~vdgiIi~~~ 81 (289)
T 2fep_A 15 KTTTVGVIIPDI---SSIFYSELARGIEDIATM-YKYNIILS-NSDQNMEKELHLLNTMLGK-QVDGIVFMGG 81 (289)
T ss_dssp -CCEEEEEESCT---TSHHHHHHHHHHHHHHHH-TTCEEEEE-ECTTCHHHHHHHHHHHHHT-TCSEEEECCS
T ss_pred CCCeEEEEeCCC---CCchHHHHHHHHHHHHHH-cCCEEEEE-eCCCCHHHHHHHHHHHHhC-CCCEEEEecC
Confidence 456788887421 111222233445667788 99987654 3466777777788877765 5999998764
No 97
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=29.88 E-value=91 Score=27.65 Aligned_cols=47 Identities=13% Similarity=0.070 Sum_probs=30.0
Q ss_pred HHHHcccCCEEEEEEEcC-CCHHHHHHHHHHHHhCCCCcEEEEeCCccC
Q psy7342 225 QLLQEDFQHAHILKTCVP-DEMEEIKDKLKYWVDQSKVDLIFTSGGTGM 272 (338)
Q Consensus 225 ~lL~~~~G~~v~~~~iV~-Dd~e~I~~aL~~a~~~~~~DlVITTGGts~ 272 (338)
.+.++ +|+.+.....-. .+.++..+++.+.+++.++|+||+.|=.-+
T Consensus 48 ~~A~~-~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~i 95 (215)
T 3tqr_A 48 KRAQQ-ADIPTHIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGFMRK 95 (215)
T ss_dssp HHHHH-TTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEESSCCSC
T ss_pred HHHHH-cCCCEEEeCccccCchhHhHHHHHHHHHhcCCCEEEEccchhh
Confidence 45666 888765443211 345555666777777667999999884433
No 98
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=29.13 E-value=1.5e+02 Score=29.06 Aligned_cols=65 Identities=6% Similarity=-0.108 Sum_probs=43.0
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCC--CHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPD--EMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~D--d~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
-+|++|...|. .|+ .....+...+++ .|+.+.....++. +...+...+.+...+.++|+||..|-
T Consensus 187 ~~V~ii~~d~~--~g~---~~~~~~~~~~~~-~gi~v~~~~~~~~~~~~~~~~~~l~~i~~~s~a~vIi~~~~ 253 (555)
T 2e4u_A 187 TYVSTVASEGD--YGE---TGIEAFEQEARL-RNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMR 253 (555)
T ss_dssp CEEEEEEESST--THH---HHHHHHHHHHHT-TTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred eEEEEEEeeCh--HHH---HHHHHHHHHHHH-CCccEEEEEEeCCCCChHHHHHHHHHHhccCCCCEEEEEcC
Confidence 35777776554 231 234566778888 8998887777763 55667777777654335899888764
No 99
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=28.81 E-value=2.1e+02 Score=24.70 Aligned_cols=78 Identities=3% Similarity=-0.187 Sum_probs=48.1
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCC--CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPD--EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~D--d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
++.+|+++..... ...+..-...+...+++ .|+++..... .+ |.+.-.+.++.++.+ ++|-||..+...-.-
T Consensus 4 ~~~~Igvi~~~~~---~~~~~~~~~g~~~~a~~-~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~vdgiii~~~~~~~~ 77 (304)
T 3o1i_D 4 SDEKICAIYPHLK---DSYWLSVNYGMVSEAEK-QGVNLRVLEA-GGYPNKSRQEQQLALCTQW-GANAIILGTVDPHAY 77 (304)
T ss_dssp -CCEEEEEESCSC---SHHHHHHHHHHHHHHHH-HTCEEEEEEC-SSTTCHHHHHHHHHHHHHH-TCSEEEECCSSTTSS
T ss_pred CCcEEEEEeCCCC---CcHHHHHHHHHHHHHHH-cCCeEEEEcC-CCCCCHHHHHHHHHHHHHc-CCCEEEEeCCChhHH
Confidence 4567888774321 12222333456677888 8998776543 44 777778888888775 599999886554333
Q ss_pred CCChHH
Q psy7342 275 RDVTPE 280 (338)
Q Consensus 275 ~D~t~e 280 (338)
.+.+.+
T Consensus 78 ~~~~~~ 83 (304)
T 3o1i_D 78 EHNLKS 83 (304)
T ss_dssp TTTHHH
T ss_pred HHHHHH
Confidence 444433
No 100
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=28.77 E-value=50 Score=29.50 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=31.6
Q ss_pred HHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 220 GPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 220 ~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
..+....+.+ ++.... ..++..+.++-.+..++.+++.++|+||+-||++
T Consensus 25 ~~~~~~i~~e-~~~~~~-I~vi~~~le~av~~a~~~~~~~~~dVIISRGgta 74 (225)
T 2pju_A 25 FELFRDISLE-FDHLAN-ITPIQLGFEKAVTYIRKKLANERCDAIIAAGSNG 74 (225)
T ss_dssp HHHHHHHHTT-TTTTCE-EEEECCCHHHHHHHHHHHTTTSCCSEEEEEHHHH
T ss_pred HHHHHHHHHh-hCCCce-EEEecCcHHHHHHHHHHHHhcCCCeEEEeCChHH
Confidence 3466666766 665432 4455566665555455555544599999999974
No 101
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=28.71 E-value=55 Score=29.28 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=32.8
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHH-------HHHHHHhCCCCcEEEEeC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKD-------KLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~-------aL~~a~~~~~~DlVITTG 268 (338)
++|+||=.|. -|..+...|.+ .|+++..+..-++..+.+.+ .+.+++.+ +|+||++=
T Consensus 2 ~~i~iIG~G~----------mG~~~a~~l~~-~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~--aDvvi~~v 65 (287)
T 3pef_A 2 QKFGFIGLGI----------MGSAMAKNLVK-AGCSVTIWNRSPEKAEELAALGAERAATPCEVVES--CPVTFAML 65 (287)
T ss_dssp CEEEEECCSH----------HHHHHHHHHHH-TTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHH--CSEEEECC
T ss_pred CEEEEEeecH----------HHHHHHHHHHH-CCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhc--CCEEEEEc
Confidence 4666665553 35556666666 77777666555554444443 34445544 67777654
No 102
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=28.60 E-value=69 Score=28.72 Aligned_cols=58 Identities=10% Similarity=0.001 Sum_probs=32.6
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHH-------HHHHHHhCCCCcEEEEeC
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKD-------KLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~-------aL~~a~~~~~~DlVITTG 268 (338)
..+|+||=.|. -|..+...|.+ .|+++..+..-++..+.+.+ .+.+++.+ +|+||++=
T Consensus 3 m~~I~iiG~G~----------mG~~~a~~l~~-~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~--aDvvi~~v 67 (302)
T 2h78_A 3 MKQIAFIGLGH----------MGAPMATNLLK-AGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQG--ADVVISML 67 (302)
T ss_dssp CCEEEEECCST----------THHHHHHHHHH-TTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTT--CSEEEECC
T ss_pred CCEEEEEeecH----------HHHHHHHHHHh-CCCeEEEEcCCHHHHHHHHHCCCeEcCCHHHHHhC--CCeEEEEC
Confidence 46788887664 35666666667 77776655433222233322 23344444 78888754
No 103
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=28.29 E-value=2e+02 Score=25.11 Aligned_cols=67 Identities=12% Similarity=0.036 Sum_probs=42.0
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
+.+|+++.-... ......-...+...+++ .|+++.... ..+|.+.-.+.++.+..+ ++|-||..+..
T Consensus 2 ~~~Ig~i~~~~~---~~~~~~~~~gi~~~a~~-~g~~l~~~~-~~~~~~~~~~~i~~l~~~-~vdgiIi~~~~ 68 (306)
T 2vk2_A 2 PLTVGFSQVGSE---SGWRAAETNVAKSEAEK-RGITLKIAD-GQQKQENQIKAVRSFVAQ-GVDAIFIAPVV 68 (306)
T ss_dssp CCEEEEEECCCC---SHHHHHHHHHHHHHHHH-HTCEEEEEE-CTTCHHHHHHHHHHHHHH-TCSEEEECCSS
T ss_pred CeEEEEEeCCCC---CHHHHHHHHHHHHHHHH-cCCEEEEeC-CCCCHHHHHHHHHHHHHc-CCCEEEEeCCC
Confidence 357788764421 11111122345667888 999876553 456777777788877765 49999987643
No 104
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=28.22 E-value=77 Score=28.11 Aligned_cols=50 Identities=6% Similarity=0.026 Sum_probs=30.8
Q ss_pred HHHHHHHcccCCEEEEEEEc-CCCHHHHHHHHHHHHhCCCCcEEEEeCCccC
Q psy7342 222 LLAQLLQEDFQHAHILKTCV-PDEMEEIKDKLKYWVDQSKVDLIFTSGGTGM 272 (338)
Q Consensus 222 ~L~~lL~~~~G~~v~~~~iV-~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~ 272 (338)
....+.++ +|+.+...... -+++++..+.+.+.+++.++|+||+.|=.-+
T Consensus 43 ~v~~~A~~-~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~I 93 (211)
T 3p9x_A 43 KVVERVKV-HEIPVCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYMRL 93 (211)
T ss_dssp HHHHHHHT-TTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCCSC
T ss_pred HHHHHHHH-cCCCEEEeChhhcCchhhhHHHHHHHHHhcCCCEEEEeCchhh
Confidence 34556677 89876544322 1345555555656665556999999874433
No 105
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=28.20 E-value=65 Score=27.30 Aligned_cols=47 Identities=17% Similarity=0.091 Sum_probs=30.6
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
++|+||..|. .|-..+..+|++ .|+++... +++. .+++ +|.||.+||
T Consensus 3 ~~I~iid~~~---------~~~~~~~~~l~~-~G~~~~~~---~~~~---------~l~~--~d~lil~G~ 49 (200)
T 1ka9_H 3 MKALLIDYGS---------GNLRSAAKALEA-AGFSVAVA---QDPK---------AHEE--ADLLVLPGQ 49 (200)
T ss_dssp CEEEEECSSC---------SCHHHHHHHHHH-TTCEEEEE---SSTT---------SCSS--CSEEEECCC
T ss_pred cEEEEEeCCC---------ccHHHHHHHHHH-CCCeEEEe---cChH---------Hccc--CCEEEECCC
Confidence 5788885542 344556889999 99887643 4431 1333 899999774
No 106
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=28.13 E-value=2.4e+02 Score=24.09 Aligned_cols=69 Identities=14% Similarity=0.067 Sum_probs=42.4
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
+..+|+++.-...+ ....+..--..+...+++ .|+++... ...+|.+...+.++.++.+ ++|-||..+.
T Consensus 18 ~~~~Ig~i~~~~~~-~~~~~~~~~~gi~~~~~~-~g~~~~~~-~~~~~~~~~~~~~~~l~~~-~vdgii~~~~ 86 (296)
T 3brq_A 18 STQTLGLVVTNTLY-HGIYFSELLFHAARMAEE-KGRQLLLA-DGKHSAEEERQAIQYLLDL-RCDAIMIYPR 86 (296)
T ss_dssp -CCEEEEEECGGGC-C--CHHHHHHHHHHHHHH-TTCEEEEE-CCTTSHHHHHHHHHHHHHT-TCSEEEEECS
T ss_pred CCceEEEEeCCccc-CCchHHHHHHHHHHHHHH-CCCEEEEE-eCCCCHHHHHHHHHHHHhc-CCCEEEEecC
Confidence 45678888743101 112222233445667788 89987654 3456777777788887765 5999998764
No 107
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=28.12 E-value=58 Score=29.97 Aligned_cols=65 Identities=11% Similarity=0.033 Sum_probs=45.0
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHH--------HHccc-CCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEe
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQL--------LQEDF-QHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTS 267 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~l--------L~~~~-G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITT 267 (338)
++++|.+-+++.| ..|-...++..+ |+. . |+++++.+. .=.++.|.++..+ .++|+|..|
T Consensus 119 ~~~~Vvlatv~gD-----~HdiG~~iv~~~k~~~~~~~L~~-~~G~eVi~LG~-~vp~e~iv~aa~e----~~~d~VglS 187 (262)
T 1xrs_B 119 RKIVVVGASTGTD-----AHTVGIDAIMNMKGYAGHYGLER-YEMIDAYNLGS-QVANEDFIKKAVE----LEADVLLVS 187 (262)
T ss_dssp SCEEEEEEEBTTC-----CCCHHHHHHHSTTCBTTBCCGGG-CTTEEEEECCS-SBCHHHHHHHHHH----TTCSEEEEE
T ss_pred CCCEEEEEeCCCC-----CchHHHHHHhhhhcccchHHHHh-cCCcEEEECCC-CCCHHHHHHHHHH----cCCCEEEEE
Confidence 5677766666654 456566667767 889 8 999999997 2335556555554 248999998
Q ss_pred CCccC
Q psy7342 268 GGTGM 272 (338)
Q Consensus 268 GGts~ 272 (338)
.-.+.
T Consensus 188 ~l~t~ 192 (262)
T 1xrs_B 188 QTVTQ 192 (262)
T ss_dssp CCCCT
T ss_pred eecCC
Confidence 86653
No 108
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=27.96 E-value=1.7e+02 Score=28.24 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=44.2
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCC-C
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPR-D 276 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~-D 276 (338)
+++|+++--|.. ..+..+|++ .|+.+..... ..+.+.+.. . .+|-||.+||-|-..+ +
T Consensus 190 ~~~V~viD~G~k-----------~ni~r~L~~-~G~~v~vvp~-~~~~e~i~~------~--~~DGliLsGGPgdp~~~~ 248 (379)
T 1a9x_B 190 PFHVVAYDFGAK-----------RNILRMLVD-RGCRLTIVPA-QTSAEDVLK------M--NPDGIFLSNGPGDPAPCD 248 (379)
T ss_dssp CEEEEEEESSCC-----------HHHHHHHHH-TTEEEEEEET-TCCHHHHHT------T--CCSEEEECCCSBCSTTCH
T ss_pred CCEEEEEECCCh-----------HHHHHHHHH-CCCEEEEEec-cCCHHHHhh------c--CCCEEEEeCCCCChHHHH
Confidence 357888876542 447788888 8987664322 123333321 1 3899999999765443 3
Q ss_pred ChHHHHHhccccccC
Q psy7342 277 VTPEAMNHLIDKKVP 291 (338)
Q Consensus 277 ~t~eal~~l~~~~lp 291 (338)
...+.++.+.+..+|
T Consensus 249 ~~~~~Ir~~~~~~~P 263 (379)
T 1a9x_B 249 YAITAIQKFLETDIP 263 (379)
T ss_dssp HHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHcCCC
Confidence 455566666655444
No 109
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=27.63 E-value=22 Score=33.07 Aligned_cols=86 Identities=8% Similarity=-0.004 Sum_probs=51.0
Q ss_pred hCCCceeEee---cCceEEEEecCCCc-----c----CC----ee--ecCcH-HHHHHHHHcccCCEEEEEEEcCCCHHH
Q psy7342 187 STSMKYWELV---RSTCHLLALVSDRC-----F----NK----ES--EDKSG-PLLAQLLQEDFQHAHILKTCVPDEMEE 247 (338)
Q Consensus 187 s~Gi~~v~V~---~~prVaIIstGdEl-----~----~G----~i--~DsN~-~~L~~lL~~~~G~~v~~~~iV~Dd~e~ 247 (338)
..|++ +.+. +++|++|+.+|.-= . .| ++ .=||. +-+..+.++ +|+.+.....-++++++
T Consensus 76 ~~~m~-~~l~~~~~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Visn~p~~~~~~A~~-~gIp~~~~~~~~~~r~~ 153 (288)
T 3obi_A 76 KFTMG-WHMRDRETRRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDF-GDIPFYHFPVNKDTRRQ 153 (288)
T ss_dssp HTTCE-EEEEETTSCEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEESSCGGGSCCTTT-TTCCEEECCCCTTTHHH
T ss_pred HcCCE-EEeeccCCCcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEcCCChhHHHHHHH-cCCCEEEeCCCcccHHH
Confidence 34544 3333 47899999988641 1 23 21 11333 334556667 88877655444456666
Q ss_pred HHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 248 IKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 248 I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
..+.+.+.+++.++|+||..|=.-+=+
T Consensus 154 ~~~~~~~~l~~~~~Dlivlagy~~il~ 180 (288)
T 3obi_A 154 QEAAITALIAQTHTDLVVLARYMQILS 180 (288)
T ss_dssp HHHHHHHHHHHHTCCEEEESSCCSCCC
T ss_pred HHHHHHHHHHhcCCCEEEhhhhhhhCC
Confidence 666666666655699999998544433
No 110
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=27.30 E-value=1.1e+02 Score=26.97 Aligned_cols=47 Identities=15% Similarity=0.017 Sum_probs=30.3
Q ss_pred HHHHHHcccCCEEEEEEEcC-CCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 223 LAQLLQEDFQHAHILKTCVP-DEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 223 L~~lL~~~~G~~v~~~~iV~-Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
...+.++ +|+.+....... .+.++..+.+.+.+.+.++|+||+.|=.
T Consensus 42 ~~~~A~~-~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~ 89 (212)
T 1jkx_A 42 GLERARQ-AGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFM 89 (212)
T ss_dssp HHHHHHH-TTCEEEECCGGGCSSHHHHHHHHHHHHGGGCCSEEEESSCC
T ss_pred HHHHHHH-cCCcEEEeCcccccchhhccHHHHHHHHhcCCCEEEEeChh
Confidence 3566777 888876543211 3455566666666666679999998743
No 111
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=27.28 E-value=2.8e+02 Score=23.34 Aligned_cols=67 Identities=10% Similarity=0.078 Sum_probs=44.6
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
..+|+++.-... ...+..-...+...+++ .|+++.... ..+|.+.-.+.++.+..+ ++|-||..+..
T Consensus 2 s~~Igvi~~~~~---~~~~~~~~~gi~~~a~~-~g~~~~~~~-~~~~~~~~~~~~~~l~~~-~vdgiIi~~~~ 68 (272)
T 3o74_A 2 TRTLGFILPDLE---NPSYARIAKQLEQGARA-RGYQLLIAS-SDDQPDSERQLQQLFRAR-RCDALFVASCL 68 (272)
T ss_dssp CCEEEEEESCTT---CHHHHHHHHHHHHHHHH-TTCEEEEEE-CTTCHHHHHHHHHHHHHT-TCSEEEECCCC
T ss_pred ceEEEEEeCCCc---ChhHHHHHHHHHHHHHH-CCCEEEEEe-CCCCHHHHHHHHHHHHHc-CCCEEEEecCc
Confidence 356777764321 22223334456677888 999887654 467788778888887775 59999988755
No 112
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=26.87 E-value=71 Score=30.97 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=39.1
Q ss_pred cHHHHHHHHHcccCCEEEEEEEcCCCHHHHH--------------------------------HHHHHHHhCCCCcEEEE
Q psy7342 219 SGPLLAQLLQEDFQHAHILKTCVPDEMEEIK--------------------------------DKLKYWVDQSKVDLIFT 266 (338)
Q Consensus 219 N~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~--------------------------------~aL~~a~~~~~~DlVIT 266 (338)
-|..+...++. +|.+++.+..-++..+.++ +.+.+++.+ +|+||+
T Consensus 195 iG~~aa~~a~~-lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~--aDIVI~ 271 (381)
T 3p2y_A 195 AGLQALATAKR-LGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAITK--FDIVIT 271 (381)
T ss_dssp HHHHHHHHHHH-HTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHTT--CSEEEE
T ss_pred HHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHhc--CCEEEE
Confidence 35666777777 7877776665555433333 356667766 899998
Q ss_pred eCCcc--CCCCCChHHHHHhc
Q psy7342 267 SGGTG--MSPRDVTPEAMNHL 285 (338)
Q Consensus 267 TGGts--~G~~D~t~eal~~l 285 (338)
+=..- ..+.=++.+.++.+
T Consensus 272 tv~iPg~~ap~Lvt~emv~~M 292 (381)
T 3p2y_A 272 TALVPGRPAPRLVTAAAATGM 292 (381)
T ss_dssp CCCCTTSCCCCCBCHHHHHTS
T ss_pred CCCCCCcccceeecHHHHhcC
Confidence 73221 12333567777765
No 113
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=26.75 E-value=54 Score=27.08 Aligned_cols=64 Identities=13% Similarity=0.009 Sum_probs=39.1
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCC-HHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDE-MEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd-~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
.||| +..||.+..|- +..+...|.. . ..+...+.-... ...+.+.+.+.+...++|+|+...|+
T Consensus 20 ~prV--l~iGDSit~G~-----~~~l~~~l~~-~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~pd~Vvi~~G~ 84 (200)
T 4h08_A 20 LPHV--LLIGNSITRGY-----YGKVEAALKE-K-AYVGRLSNSKSVGDPALIEELAVVLKNTKFDVIHFNNGL 84 (200)
T ss_dssp SCEE--EEEESHHHHHH-----HHHHHHHTTT-T-CEEEEEEESCCTTCHHHHHHHHHHHHHSCCSEEEECCCS
T ss_pred CCeE--EEEchhHHhhh-----HHHHHHHhcc-C-CeEEEEeccCCccHHHHHHHHHHHHhcCCCCeEEEEeee
Confidence 4664 55799887652 3456666654 2 355555554333 34555666666655569999987766
No 114
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=26.23 E-value=2.6e+02 Score=23.82 Aligned_cols=79 Identities=13% Similarity=0.115 Sum_probs=50.8
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEc--CCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCC
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCV--PDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPR 275 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV--~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~ 275 (338)
+|+|+||.-|+.=. .-..-....|++ +|+.. ..+++ --.++.+.+.++++-++.++++||...|.+
T Consensus 2 ~~~V~Iimgs~SD~------~v~~~a~~~l~~-~gi~~-ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~a---- 69 (159)
T 3rg8_A 2 RPLVIILMGSSSDM------GHAEKIASELKT-FGIEY-AIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRS---- 69 (159)
T ss_dssp CCEEEEEESSGGGH------HHHHHHHHHHHH-TTCEE-EEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSS----
T ss_pred CCeEEEEECcHHHH------HHHHHHHHHHHH-cCCCE-EEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCch----
Confidence 47888887554310 112334567888 99874 34443 356888888888776543589999877653
Q ss_pred CChHHHHHhcccc
Q psy7342 276 DVTPEAMNHLIDK 288 (338)
Q Consensus 276 D~t~eal~~l~~~ 288 (338)
-..|-++..+-..
T Consensus 70 a~LpgvvA~~t~~ 82 (159)
T 3rg8_A 70 NALSGFVDGFVKG 82 (159)
T ss_dssp CCHHHHHHHHSSS
T ss_pred hhhHHHHHhccCC
Confidence 4678888776544
No 115
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=26.19 E-value=28 Score=30.35 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=34.6
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
..||+.++..++. +...+..+|++ .|+++.. ++.+. ... .+.+ +|.||.+||
T Consensus 12 ~~~~i~~id~~~~---------~~~~~~~~l~~-~G~~~~v---v~~~~-----~~~-~l~~--~DglIl~GG 63 (212)
T 2a9v_A 12 HMLKIYVVDNGGQ---------WTHREWRVLRE-LGVDTKI---VPNDI-----DSS-ELDG--LDGLVLSGG 63 (212)
T ss_dssp CCCBEEEEEESCC---------TTCHHHHHHHH-TTCBCCE---EETTS-----CGG-GGTT--CSEEEEEEE
T ss_pred ccceEEEEeCCCc---------cHHHHHHHHHH-CCCEEEE---EeCCC-----CHH-HHhC--CCEEEECCC
Confidence 4688888887764 45678889999 9987653 33221 011 1233 799999999
No 116
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=25.82 E-value=1.5e+02 Score=28.80 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=21.4
Q ss_pred HHHHHHHhCCCCcEEEEeCCcc--CCCCCChHHHHHhc
Q psy7342 250 DKLKYWVDQSKVDLIFTSGGTG--MSPRDVTPEAMNHL 285 (338)
Q Consensus 250 ~aL~~a~~~~~~DlVITTGGts--~G~~D~t~eal~~l 285 (338)
+.+.+++.+ +|+||++=..- ..+.=++.+.++.+
T Consensus 267 ~~l~e~l~~--aDVVI~tvlipg~~ap~Lvt~emv~~M 302 (405)
T 4dio_A 267 ALVAEHIAK--QDIVITTALIPGRPAPRLVTREMLDSM 302 (405)
T ss_dssp HHHHHHHHT--CSEEEECCCCSSSCCCCCBCHHHHTTS
T ss_pred hHHHHHhcC--CCEEEECCcCCCCCCCEEecHHHHhcC
Confidence 456677766 89999873221 23444677777765
No 117
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=25.76 E-value=66 Score=27.78 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=29.5
Q ss_pred HHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 220 GPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 220 ~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
..++...+.+ ++.++. +.--+.++-.+..+++ + .++|+||+-||+.
T Consensus 17 ~~~~~~i~~e-~~~~i~---i~~~~l~~~v~~a~~~-~-~~~dVIISRGgta 62 (196)
T 2q5c_A 17 LNLFPKLALE-KNFIPI---TKTASLTRASKIAFGL-Q-DEVDAIISRGATS 62 (196)
T ss_dssp HHHHHHHHHH-HTCEEE---EEECCHHHHHHHHHHH-T-TTCSEEEEEHHHH
T ss_pred HHHHHHHHhh-hCCceE---EEECCHHHHHHHHHHh-c-CCCeEEEECChHH
Confidence 3566777777 776443 3444455444555555 4 4699999999974
No 118
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=25.70 E-value=70 Score=29.33 Aligned_cols=59 Identities=12% Similarity=0.030 Sum_probs=35.1
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHH-------HHHHHHhCCCCcEEEEeCC
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKD-------KLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~-------aL~~a~~~~~~DlVITTGG 269 (338)
.++|+||=.|. -|..+...|.+ .|+++..+..-++..+.+.+ .+.+++.+ +|+||++=.
T Consensus 31 ~~~I~iIG~G~----------mG~~~a~~l~~-~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~--aDvVi~~vp 96 (320)
T 4dll_A 31 ARKITFLGTGS----------MGLPMARRLCE-AGYALQVWNRTPARAASLAALGATIHEQARAAARD--ADIVVSMLE 96 (320)
T ss_dssp CSEEEEECCTT----------THHHHHHHHHH-TTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTT--CSEEEECCS
T ss_pred CCEEEEECccH----------HHHHHHHHHHh-CCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhc--CCEEEEECC
Confidence 46899997775 35666777777 78777655443332333321 23445554 788887653
No 119
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=25.67 E-value=88 Score=26.65 Aligned_cols=71 Identities=21% Similarity=0.172 Sum_probs=41.6
Q ss_pred ecCceEEEEecCCCccCCee----ecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 196 VRSTCHLLALVSDRCFNKES----EDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 196 ~~~prVaIIstGdEl~~G~i----~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
...+||+++...=|....+. .=++..-+..++++ +.+.+++.+++..+. ++|+||+.+|.
T Consensus 25 i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~--------------E~~~l~~~v~kI~~~-g~nVVl~~k~I- 88 (178)
T 1gml_A 25 IKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQM--------------EEEYIHQLCEDIIQL-KPDVVITEKGI- 88 (178)
T ss_dssp EESCCEEEESSCBSCC--------------CHHHHHHH--------------HHHHHHHHHHHHHTT-CCSEEEESSCB-
T ss_pred cccceEEEEecccCCccccCccEEEECCHHHHHHHHHH--------------HHHHHHHHHHHHhhc-CCcEEEECCcc-
Confidence 46899999988766432211 11111222233322 445677777777765 69999999998
Q ss_pred CCCCCChHHHHHhc
Q psy7342 272 MSPRDVTPEAMNHL 285 (338)
Q Consensus 272 ~G~~D~t~eal~~l 285 (338)
+|+..+-+.+.
T Consensus 89 ---~d~a~~~l~k~ 99 (178)
T 1gml_A 89 ---SDLAQHYLMRA 99 (178)
T ss_dssp ---CHHHHHHHHHT
T ss_pred ---cHHHHHHHHHC
Confidence 56666666554
No 120
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=25.67 E-value=2.1e+02 Score=24.55 Aligned_cols=70 Identities=6% Similarity=0.001 Sum_probs=44.3
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHccc-CCEEEEEE--EcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDF-QHAHILKT--CVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~-G~~v~~~~--iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
+..+|+++..... ....+..-...+...+++ . |+.+.... .-.+|.+...+.++.+..+ ++|-||..+..
T Consensus 7 ~~~~Igvi~~~~~--~~~~~~~~~~gi~~~a~~-~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~vdgiii~~~~ 79 (304)
T 3gbv_A 7 KKYTFACLLPKHL--EGEYWTDVQKGIREAVTT-YSDFNISANITHYDPYDYNSFVATSQAVIEE-QPDGVMFAPTV 79 (304)
T ss_dssp CCEEEEEEEECCC--TTSHHHHHHHHHHHHHHH-TGGGCEEEEEEEECSSCHHHHHHHHHHHHTT-CCSEEEECCSS
T ss_pred CcceEEEEecCCC--CchHHHHHHHHHHHHHHH-HHhCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCEEEECCCC
Confidence 4567887765421 112223334456677777 6 66654443 3456888888888888775 59999998653
No 121
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=25.50 E-value=1.4e+02 Score=26.34 Aligned_cols=48 Identities=10% Similarity=0.052 Sum_probs=32.3
Q ss_pred HHHHHcccCCEEEEEEEc-CCCHHHHHHHHHHHHhCCCCcEEEEeCCccC
Q psy7342 224 AQLLQEDFQHAHILKTCV-PDEMEEIKDKLKYWVDQSKVDLIFTSGGTGM 272 (338)
Q Consensus 224 ~~lL~~~~G~~v~~~~iV-~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~ 272 (338)
..+.++ +|+.+.....- .+++++..+++.+.+++.++|+|++.|=.-+
T Consensus 53 ~~~A~~-~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~~i 101 (215)
T 3da8_A 53 AEIAAE-ASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFMRI 101 (215)
T ss_dssp HHHHHH-TTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEEECCSC
T ss_pred HHHHHH-cCCCEEEeCcccccchhhhhHHHHHHHHhhCCCEEEEcCchhh
Confidence 445667 88876655321 2356677777777777777999999884433
No 122
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=25.13 E-value=47 Score=28.36 Aligned_cols=80 Identities=10% Similarity=-0.068 Sum_probs=40.6
Q ss_pred CCCceeEeecCceEEEEecCCCccCCeee---------cCcHHHHHHHHHcccCCEEEEEEEcCCCHH----------HH
Q psy7342 188 TSMKYWELVRSTCHLLALVSDRCFNKESE---------DKSGPLLAQLLQEDFQHAHILKTCVPDEME----------EI 248 (338)
Q Consensus 188 ~Gi~~v~V~~~prVaIIstGdEl~~G~i~---------DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e----------~I 248 (338)
.|..... .+.+.-.|+..||.+..|... ..=...|+..| . .++.+...++-.+... ..
T Consensus 12 ~~~~~~~-~q~~~~~I~~lGDSit~G~~~~~~~~~~~~~~w~~~l~~~l-~-~~~~v~N~g~~G~t~~~~~~~~~~~~~~ 88 (232)
T 3dci_A 12 SGRENLY-FQGHMKTVLAFGDSLTWGADPATGLRHPVEHRWPDVLEAEL-A-GKAKVHPEGLGGRTTCYDDHAGPACRNG 88 (232)
T ss_dssp ------------CEEEEEEESHHHHTBCTTTCCBCCGGGSHHHHHHHHH-T-TSEEEEEEECTTCBSSCCCCSSSSCCBH
T ss_pred ccccccc-ccCCCCEEEEEECccccCCCCCCcccCCcCCccHHHHHHHh-C-CCCeEEEcccCCccccccCcccccchhH
Confidence 3444443 233445788899999766432 12244555555 2 4667888887555432 23
Q ss_pred HHHHHHHHhCCCC-cEEEEeCCc
Q psy7342 249 KDKLKYWVDQSKV-DLIFTSGGT 270 (338)
Q Consensus 249 ~~aL~~a~~~~~~-DlVITTGGt 270 (338)
.+.+.+.+..... |+|+...|+
T Consensus 89 ~~~l~~~l~~~~p~d~VvI~~Gt 111 (232)
T 3dci_A 89 ARALEVALSCHMPLDLVIIMLGT 111 (232)
T ss_dssp HHHHHHHHHHHCSCSEEEEECCT
T ss_pred HHHHHHHHhhCCCCCEEEEEecc
Confidence 3344444432224 999998876
No 123
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=25.09 E-value=22 Score=33.13 Aligned_cols=77 Identities=13% Similarity=0.017 Sum_probs=44.3
Q ss_pred cCceEEEEecCCCc-----c----CC----eee--cCcHHH-HHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCC
Q psy7342 197 RSTCHLLALVSDRC-----F----NK----ESE--DKSGPL-LAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSK 260 (338)
Q Consensus 197 ~~prVaIIstGdEl-----~----~G----~i~--DsN~~~-L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~ 260 (338)
+++|++|+.+|.-= . .| ++. =||.+- +..+.++ +|+.+.....-+++.++..+.+.+.+++.+
T Consensus 87 ~~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Visn~~~a~~~~A~~-~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~ 165 (287)
T 3nrb_A 87 DRKKVVIMVSKFDHCLGDLLYRHRLGELDMEVVGIISNHPREALSVSLV-GDIPFHYLPVTPATKAAQESQIKNIVTQSQ 165 (287)
T ss_dssp CCCEEEEEECSCCHHHHHHHHHHHHTSSCCEEEEEEESSCGGGCCCCCC-TTSCEEECCCCGGGHHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEEeCCCcCHHHHHHHHHCCCCCeEEEEEEeCChHHHHHHHHH-cCCCEEEEeccCcchhhHHHHHHHHHHHhC
Confidence 47899999988641 0 12 211 122222 4455566 787766544333455555556666665556
Q ss_pred CcEEEEeCCccCCC
Q psy7342 261 VDLIFTSGGTGMSP 274 (338)
Q Consensus 261 ~DlVITTGGts~G~ 274 (338)
+|+|+..|=.-+=+
T Consensus 166 ~Dlivlagym~il~ 179 (287)
T 3nrb_A 166 ADLIVLARYMQILS 179 (287)
T ss_dssp CSEEEESSCCSCCC
T ss_pred CCEEEhhhhhhhcC
Confidence 99999998554433
No 124
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=25.05 E-value=2.9e+02 Score=24.51 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=42.4
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
+..+|+++...- ....+..--..+...+++ .|+.+... ...+|.+...+.++.+..+ ++|-||..+.
T Consensus 62 ~~~~Ig~i~~~~---~~~~~~~~~~gi~~~~~~-~g~~~~~~-~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~ 128 (332)
T 2o20_A 62 RTTTVGVILPTI---TSTYFAAITRGVDDIASM-YKYNMILA-NSDNDVEKEEKVLETFLSK-QVDGIVYMGS 128 (332)
T ss_dssp CCCEEEEEESCT---TCHHHHHHHHHHHHHHHH-TTCEEEEE-ECTTCHHHHHHHHHHHHHT-TCSEEEECSS
T ss_pred CCCEEEEEeCCC---CCcHHHHHHHHHHHHHHH-cCCEEEEE-ECCCChHHHHHHHHHHHhC-CCCEEEEeCC
Confidence 456788876321 111222233445667778 89987654 3456777777778877765 5999998764
No 125
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=24.94 E-value=32 Score=34.49 Aligned_cols=75 Identities=20% Similarity=0.194 Sum_probs=41.8
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCC
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDV 277 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~ 277 (338)
..+|.||--|+ .+...+...|++ .|..+..... ..+.+.|+ ...+|-||.+||-+--..+-
T Consensus 10 ~~~I~IlD~g~---------~~~~~i~r~lr~-~Gv~~~i~p~-~~~~~~i~--------~~~~dgIILsGGp~sv~~~~ 70 (527)
T 3tqi_A 10 QHRILILDFGS---------QYAQLIARRVRE-IGVYCELMPC-DIDEETIR--------DFNPHGIILSGGPETVTLSH 70 (527)
T ss_dssp CSEEEEEECSC---------TTHHHHHHHHHH-HTCEEEEEET-TCCSSSST--------TTCCSEEEECCCCC------
T ss_pred CCeEEEEECCC---------ccHHHHHHHHHH-CCCeEEEEEC-CCCHHHHH--------hcCCCEEEECCcCcccccCC
Confidence 45799998775 577899999999 9986554322 12222222 11379999999865322222
Q ss_pred hHHHHHhccccccC
Q psy7342 278 TPEAMNHLIDKKVP 291 (338)
Q Consensus 278 t~eal~~l~~~~lp 291 (338)
.+.+...+.+..+|
T Consensus 71 ~~~~~~~~~~~~~P 84 (527)
T 3tqi_A 71 TLRAPAFIFEIGCP 84 (527)
T ss_dssp ---CCCSTTTSSSC
T ss_pred ChhhHHHHHhcCCC
Confidence 34444444544444
No 126
>1fui_A L-fucose isomerase; ketol isomerase, fucose metabolism, L-fucose to L conversion; HET: FOC; 2.50A {Escherichia coli} SCOP: b.43.2.1 c.85.1.1
Probab=24.91 E-value=61 Score=33.35 Aligned_cols=69 Identities=17% Similarity=0.063 Sum_probs=43.4
Q ss_pred cCceEEEEecCCCccCCeeec----------CcHHHHHHHHHcccC---CEEEEEEEcCCCHHHHHHHHHHHHhCCCCcE
Q psy7342 197 RSTCHLLALVSDRCFNKESED----------KSGPLLAQLLQEDFQ---HAHILKTCVPDEMEEIKDKLKYWVDQSKVDL 263 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~D----------sN~~~L~~lL~~~~G---~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~Dl 263 (338)
.+|||||++|+|.-+-|+... .....+.+.|+. .+ .+++....+-++.++.+...+...++ ++|.
T Consensus 5 ~~~kiGi~p~~~gr~~~~r~~l~~~~~~~~~~~~~~i~~~L~~-~~~~pvevV~~~~~i~~~~~a~~~~e~f~~~-~vd~ 82 (591)
T 1fui_A 5 SLPKIGIRPVIDGRRMGVRESLEEQTMNMAKATAALLTEKLRH-ACGAAVECVISDTCIAGMAEAAACEEKFSSQ-NVGL 82 (591)
T ss_dssp SCCEEEEEEBCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHCBC-TTSCBCCEEECSSCBCSHHHHHHHHHHHHTT-TEEE
T ss_pred CCceEEEEeccccccccchhchhHHHHHHHHHHHHHHHHHHhh-cCCCCeEEEECCCccCCHHHHHHHHHHhhcc-CCCE
Confidence 479999999999865443322 223334455554 34 56666555666777766666665554 6899
Q ss_pred EEEe
Q psy7342 264 IFTS 267 (338)
Q Consensus 264 VITT 267 (338)
+||.
T Consensus 83 vi~~ 86 (591)
T 1fui_A 83 TITV 86 (591)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9873
No 127
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*
Probab=24.75 E-value=1.3e+02 Score=25.69 Aligned_cols=73 Identities=12% Similarity=-0.023 Sum_probs=46.7
Q ss_pred cHHHHHHHHHcccCCEEEEEEEc-----------C-C--CHHHHHHHHHHHHhC---CCCcEEEEeCCccCC-C--CCCh
Q psy7342 219 SGPLLAQLLQEDFQHAHILKTCV-----------P-D--EMEEIKDKLKYWVDQ---SKVDLIFTSGGTGMS-P--RDVT 278 (338)
Q Consensus 219 N~~~L~~lL~~~~G~~v~~~~iV-----------~-D--d~e~I~~aL~~a~~~---~~~DlVITTGGts~G-~--~D~t 278 (338)
-|..+...|.+ .|++++-...- + | |++.+++.+++..++ ++.|++|-+.|.... + .+..
T Consensus 19 IG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~ 97 (241)
T 1dhr_A 19 LGSRCVQAFRA-RNWWVASIDVVENEEASASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSL 97 (241)
T ss_dssp HHHHHHHHHHT-TTCEEEEEESSCCTTSSEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTCTTH
T ss_pred HHHHHHHHHHh-CCCEEEEEeCChhhccCCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCCEEEEcccccCCCCCcccCC
Confidence 46777888888 88887654322 1 2 466777777766543 258999999887542 2 4667
Q ss_pred HHHHHhccccccCC
Q psy7342 279 PEAMNHLIDKKVPC 292 (338)
Q Consensus 279 ~eal~~l~~~~lpG 292 (338)
.+.+++..+.-+-|
T Consensus 98 ~~~~~~~~~~N~~~ 111 (241)
T 1dhr_A 98 FKNCDLMWKQSIWT 111 (241)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHH
Confidence 77777666554433
No 128
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=24.68 E-value=1.8e+02 Score=25.10 Aligned_cols=78 Identities=10% Similarity=0.040 Sum_probs=50.8
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcC--CCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCC
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVP--DEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPR 275 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~--Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~ 275 (338)
+|+|+||.-|+.=. .-..-....|++ +|+.. ..+++. -.++.+.+.++++-++ ++++||+..|.+
T Consensus 5 ~p~V~IimgS~SD~------~v~~~a~~~l~~-~gi~~-ev~V~SaHRtp~~l~~~~~~~~~~-g~~ViIa~AG~a---- 71 (166)
T 3oow_A 5 SVQVGVIMGSKSDW------STMKECCDILDN-LGIGY-ECEVVSAHRTPDKMFDYAETAKER-GLKVIIAGAGGA---- 71 (166)
T ss_dssp CEEEEEEESSGGGH------HHHHHHHHHHHH-TTCEE-EEEECCTTTCHHHHHHHHHHTTTT-TCCEEEEEECSS----
T ss_pred CCeEEEEECcHHhH------HHHHHHHHHHHH-cCCCE-EEEEEcCcCCHHHHHHHHHHHHhC-CCcEEEEECCcc----
Confidence 37899887554310 112344567888 99853 444443 4578888888887655 589999876653
Q ss_pred CChHHHHHhcccc
Q psy7342 276 DVTPEAMNHLIDK 288 (338)
Q Consensus 276 D~t~eal~~l~~~ 288 (338)
-..|-++..+-..
T Consensus 72 a~LpgvvA~~t~~ 84 (166)
T 3oow_A 72 AHLPGMVAAKTTL 84 (166)
T ss_dssp CCHHHHHHHTCSS
T ss_pred hhhHHHHHhccCC
Confidence 3578888776544
No 129
>2gp4_A 6-phosphogluconate dehydratase; N-terminal domain largely alpha-helical, C-terminal domain M beta-sheet (trefoil-like); 2.49A {Shewanella oneidensis} SCOP: c.8.2.2 d.334.1.1
Probab=24.30 E-value=41 Score=34.90 Aligned_cols=76 Identities=12% Similarity=0.008 Sum_probs=32.8
Q ss_pred EeecCceEEEEecCCCccCCee-ecCcHHHHHHHHHcccCCEEEEE---EEcCC--------------CHHHHHHHHHHH
Q psy7342 194 ELVRSTCHLLALVSDRCFNKES-EDKSGPLLAQLLQEDFQHAHILK---TCVPD--------------EMEEIKDKLKYW 255 (338)
Q Consensus 194 ~V~~~prVaIIstGdEl~~G~i-~DsN~~~L~~lL~~~~G~~v~~~---~iV~D--------------d~e~I~~aL~~a 255 (338)
.-+.+|.|+|+++.+|+.++.. .+.-...++.-+++ .|.....+ ..+.| ++|.|...++..
T Consensus 81 ~~~~kP~IgI~ns~~d~~p~h~hl~~l~~~Vk~gv~~-aGg~p~efg~~pav~DGit~G~~GM~ySL~SRelIAdsiE~~ 159 (628)
T 2gp4_A 81 RQLTKANIGIITAFNDMLSAHQPYETYPDLLKKACQE-VGSVAQVAGGVPAMCDGVTQGQPGMELSLLSREVIAMATAVG 159 (628)
T ss_dssp -----------------------------CCC---CC-CCEEEEECC-BC--CCCCCCSSSGGGGHHHHHHHHHHHHHHH
T ss_pred hccCCCEEEEEeccccCcccchhHHHHHHHHHHHHHH-cCCcceecCCCCcCCCccccCCcccccchhhHHHHHHHHHHH
Confidence 3457999999999999987643 45556667777888 88766664 22333 378899999999
Q ss_pred HhCCCCcEEEEeCCc
Q psy7342 256 VDQSKVDLIFTSGGT 270 (338)
Q Consensus 256 ~~~~~~DlVITTGGt 270 (338)
+..+.+|-+|..||-
T Consensus 160 ~~a~~~Dg~V~i~~C 174 (628)
T 2gp4_A 160 LSHNMFDGALLLGIC 174 (628)
T ss_dssp HTTCCCSEEEEECCS
T ss_pred HhCCCCCeEEEeccC
Confidence 887779999998864
No 130
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=24.19 E-value=2.3e+02 Score=24.34 Aligned_cols=67 Identities=10% Similarity=0.099 Sum_probs=44.1
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
+..+|+++.-... ...+..--..+...+++ .|+.+.......+|.+.-.+.++.+..+ ++|-||..+
T Consensus 9 ~~~~Igvi~~~~~---~~~~~~~~~gi~~~a~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~~-~vdgiIi~~ 75 (277)
T 3hs3_A 9 KSKMIGIIIPDLN---NRFYAQIIDGIQEVIQK-EGYTALISFSTNSDVKKYQNAIINFENN-NVDGIITSA 75 (277)
T ss_dssp CCCEEEEEESCTT---SHHHHHHHHHHHHHHHH-TTCEEEEEECSSCCHHHHHHHHHHHHHT-TCSEEEEEC
T ss_pred CCCEEEEEeCCCC---ChhHHHHHHHHHHHHHH-CCCCEEEEEeCCCChHHHHHHHHHHHhC-CCCEEEEcc
Confidence 4567888874321 22223334456677888 9998333445567777777778877765 599999887
No 131
>3a9s_A D-arabinose isomerase; rossmann fold, beta barrel, carbohydrate metabolism, cytoplasm, fucose metabolism, manganese, metal- binding; 1.60A {Geobacillus pallidus} PDB: 3a9r_A 3a9t_A*
Probab=24.04 E-value=69 Score=33.01 Aligned_cols=73 Identities=12% Similarity=0.046 Sum_probs=43.7
Q ss_pred ecCceEEEEecCCCccCCeeecCc------HHHHHHHHHcc----c--CCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcE
Q psy7342 196 VRSTCHLLALVSDRCFNKESEDKS------GPLLAQLLQED----F--QHAHILKTCVPDEMEEIKDKLKYWVDQSKVDL 263 (338)
Q Consensus 196 ~~~prVaIIstGdEl~~G~i~DsN------~~~L~~lL~~~----~--G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~Dl 263 (338)
-++|||||++|+|.-+-|+...-+ ...++.+++++ . +.+++...-+=++.++.++..+....+ ++|+
T Consensus 9 ~~~~kiGi~p~~dgr~~~~re~l~~~~~~~a~~~~~~l~~~l~~~~g~~vevV~~~~~I~~~~eA~~~ae~F~~~-~vd~ 87 (595)
T 3a9s_A 9 GNLPKIGIRPTIDGRRKGVRESLEETTMNMAKAVAKLLEENVFYYNGQPVECVIADTCIGGVKEAAEAAEKFARE-GVGV 87 (595)
T ss_dssp SBCCEEEEEEBCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHCBCTTSCBCCEEECSSCBCSHHHHHHHHHHHHHH-TEEE
T ss_pred cCCceEEEEeccccccccchhchhHHHHHHHHHHHHHHHHHHhhccCCCeEEEECCCeeCCHHHHHHHHHHHHHc-CCCE
Confidence 367999999999986433322111 11233444441 1 457777774455666666666666654 5899
Q ss_pred EEEeCC
Q psy7342 264 IFTSGG 269 (338)
Q Consensus 264 VITTGG 269 (338)
+|+.=+
T Consensus 88 ii~~~~ 93 (595)
T 3a9s_A 88 SITVTP 93 (595)
T ss_dssp EEEEES
T ss_pred EEEEec
Confidence 996433
No 132
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=23.99 E-value=3.1e+02 Score=23.60 Aligned_cols=65 Identities=6% Similarity=0.009 Sum_probs=40.9
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCC-EEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQH-AHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~-~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
.+|+++...- .......-...+...+++ .|+ ++.... ..+|.+...+.++.++.+ ++|-||..+.
T Consensus 3 ~~Igvi~~~~---~~~~~~~~~~gi~~~a~~-~g~~~~~~~~-~~~~~~~~~~~~~~~~~~-~vdgiii~~~ 68 (309)
T 2fvy_A 3 TRIGVTIYKY---DDNFMSVVRKAIEQDAKA-APDVQLLMND-SQNDQSKQNDQIDVLLAK-GVKALAINLV 68 (309)
T ss_dssp EEEEEEESCT---TSHHHHHHHHHHHHHHHT-CTTEEEEEEE-CTTCHHHHHHHHHHHHHT-TCSEEEECCS
T ss_pred cEEEEEeccC---CcHHHHHHHHHHHHHHHh-cCCeEEEEec-CCCCHHHHHHHHHHHHHc-CCCEEEEeCC
Confidence 4677776321 112222334455677888 897 765543 456777777888887765 5999998653
No 133
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=23.84 E-value=1.2e+02 Score=28.74 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=39.5
Q ss_pred cHHHHHHHHHcccCCEEEEEE-EcCC-CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 219 SGPLLAQLLQEDFQHAHILKT-CVPD-EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 219 N~~~L~~lL~~~~G~~v~~~~-iV~D-d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
-...+...|++ .|+++..+. +.++ +.+.+.+.++.+.+. ++|+||-.||-|+.+
T Consensus 51 ~~~~v~~~L~~-~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~d~IIavGGGsv~D 106 (387)
T 3bfj_A 51 AVDKTLHYLRE-AGIEVAIFDGVEPNPKDTNVRDGLAVFRRE-QCDIIVTVGGGSPHD 106 (387)
T ss_dssp SHHHHHHHHHH-TTCEEEEECCCCSSCBHHHHHHHHHHHHHT-TCCEEEEEESHHHHH
T ss_pred HHHHHHHHHHH-cCCeEEEECCccCCCCHHHHHHHHHHHHhc-CCCEEEEeCCcchhh
Confidence 36678888988 898875544 3444 567777777776654 699999999977765
No 134
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=23.69 E-value=1.1e+02 Score=28.74 Aligned_cols=53 Identities=15% Similarity=0.252 Sum_probs=38.5
Q ss_pred HHHHHHHHHcccCCEEEEEE-EcCC-CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 220 GPLLAQLLQEDFQHAHILKT-CVPD-EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 220 ~~~L~~lL~~~~G~~v~~~~-iV~D-d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
...+...|++ .|+++..+. +.++ +.+.+.+.++.+.+. ++|+||-.||=|+.+
T Consensus 48 ~~~v~~~L~~-~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~d~IIavGGGsv~D 102 (386)
T 1rrm_A 48 VAKVTDKMDA-AGLAWAIYDGVVPNPTITVVKEGLGVFQNS-GADYLIAIGGGSPQD 102 (386)
T ss_dssp HHHHHHHHHH-TTCEEEEECBCCSSCBHHHHHHHHHHHHHH-TCSEEEEEESHHHHH
T ss_pred HHHHHHHHHH-cCCeEEEECCccCCCCHHHHHHHHHHHHhc-CcCEEEEeCChHHHH
Confidence 5567778888 898875444 4454 567777777776654 599999999977765
No 135
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=23.67 E-value=87 Score=29.83 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=38.1
Q ss_pred HHHHHHHHHcccCCEEEEEE-EcCC-CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 220 GPLLAQLLQEDFQHAHILKT-CVPD-EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 220 ~~~L~~lL~~~~G~~v~~~~-iV~D-d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
...+...|++ .|+++..+. +.++ +.+.+.+.++.+.+. ++|+||-.||-|+.+
T Consensus 48 ~~~v~~~L~~-~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~-~~D~IIavGGGsv~D 102 (383)
T 3ox4_A 48 VKQVADLLKA-QGINSAVYDGVMPNPTVTAVLEGLKILKDN-NSDFVISLGGGSPHD 102 (383)
T ss_dssp HHHHHHHHHT-TTCEEEEEEEECSSCBHHHHHHHHHHHHHH-TCSEEEEEESHHHHH
T ss_pred HHHHHHHHHH-cCCeEEEECCccCCCCHHHHHHHHHHHHhc-CcCEEEEeCCcHHHH
Confidence 4567888998 898875554 4443 456677776666554 599999999988765
No 136
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=23.49 E-value=79 Score=28.77 Aligned_cols=59 Identities=5% Similarity=-0.100 Sum_probs=38.8
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHH-------HHHHHHhCCCCcEEEEeC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKD-------KLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~-------aL~~a~~~~~~DlVITTG 268 (338)
+.++|+||=.|. -|..+...|.+ .|+++..+..-++..+.+.+ .+.+++.+ +|+||++=
T Consensus 20 ~m~~I~iIG~G~----------mG~~~A~~l~~-~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~--aDvvi~~v 85 (310)
T 3doj_A 20 HMMEVGFLGLGI----------MGKAMSMNLLK-NGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKK--CKYTIAML 85 (310)
T ss_dssp CSCEEEEECCSH----------HHHHHHHHHHH-TTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHH--CSEEEECC
T ss_pred cCCEEEEECccH----------HHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHh--CCEEEEEc
Confidence 457899987664 35667777777 78887777665555555543 24455555 78888764
No 137
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=23.45 E-value=95 Score=32.11 Aligned_cols=63 Identities=22% Similarity=0.252 Sum_probs=38.6
Q ss_pred ecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCCC------hHHHHHhccccc
Q psy7342 216 EDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDV------TPEAMNHLIDKK 289 (338)
Q Consensus 216 ~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D~------t~eal~~l~~~~ 289 (338)
+|++...|..++++ .|+.+..... |+.. ...+ +|.||.+||-|--..+- ..+.++.+.+..
T Consensus 455 gdsf~~~l~~~l~~-~G~~v~Vv~~--d~~~--------~~~~--~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~~~~ 521 (645)
T 3r75_A 455 EDHFTAMIAQQLSS-LGLATEVCGV--HDAV--------DLAR--YDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEG 521 (645)
T ss_dssp SCTHHHHHHHHHHH-TTCEEEEEET--TCCC--------CGGG--CSEEEECCCSSCTTCTTSHHHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHH-CCCEEEEEEC--CCcc--------cccC--CCEEEECCCCCChhhhhhhhHHHHHHHHHHHHHCC
Confidence 46788999999999 9987654322 2210 1233 89999999977533322 234455544444
Q ss_pred cC
Q psy7342 290 VP 291 (338)
Q Consensus 290 lp 291 (338)
+|
T Consensus 522 iP 523 (645)
T 3r75_A 522 KP 523 (645)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 138
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=23.41 E-value=1.8e+02 Score=28.00 Aligned_cols=73 Identities=3% Similarity=-0.143 Sum_probs=46.6
Q ss_pred HHHhhCCCceeEeecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCC--HHHHHHHHHHHHhCCC
Q psy7342 183 AQRCSTSMKYWELVRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDE--MEEIKDKLKYWVDQSK 260 (338)
Q Consensus 183 ~lLas~Gi~~v~V~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd--~e~I~~aL~~a~~~~~ 260 (338)
.++...|++ +|+||...|+- | ......+.+.+++ .|+.+.....++.+ ...+...+.+.+.+.+
T Consensus 178 ~ll~~fgw~--------~V~ii~~dd~~--G---~~~~~~~~~~~~~-~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~ 243 (479)
T 3sm9_A 178 EILRFFNWT--------YVSTVASEGDY--G---ETGIEAFEQEARL-RNISIATAEKVGRSNIRKSYDSVIRELLQKPN 243 (479)
T ss_dssp HHHHHTTCC--------EEEEEEESSHH--H---HHHHHHHHHHHHT-TTCEEEEEEEECC--CHHHHHHHHHHHHTCTT
T ss_pred HHHHHCCCe--------EEEEEEecchh--h---HHHHHHHHHHHHH-CCceEEEEEEcCCCCChHHHHHHHHHHHhcCC
Confidence 555555544 56777765541 2 1234567778888 89988888777743 4566666645554445
Q ss_pred CcEEEEeCC
Q psy7342 261 VDLIFTSGG 269 (338)
Q Consensus 261 ~DlVITTGG 269 (338)
+|+||..|-
T Consensus 244 a~vIi~~~~ 252 (479)
T 3sm9_A 244 ARVVVLFMR 252 (479)
T ss_dssp CCEEEEECC
T ss_pred CeEEEEEcC
Confidence 899998774
No 139
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=23.37 E-value=1.3e+02 Score=25.58 Aligned_cols=49 Identities=16% Similarity=0.055 Sum_probs=30.8
Q ss_pred ecCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 196 VRSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 196 ~~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
.++++|+|+.. .| |-..+...|++ .|+++... ++. + .+++ +|.||.+||
T Consensus 18 ~~~~~I~ii~~-----~~-----~~~~~~~~l~~-~g~~~~~~---~~~-~--------~l~~--~d~iil~GG 66 (208)
T 2iss_D 18 GSHMKIGVLGV-----QG-----DVREHVEALHK-LGVETLIV---KLP-E--------QLDM--VDGLILPGG 66 (208)
T ss_dssp --CCEEEEECS-----SS-----CHHHHHHHHHH-TTCEEEEE---CSG-G--------GGGG--CSEEEECSS
T ss_pred CCCcEEEEEEC-----CC-----chHHHHHHHHH-CCCEEEEe---CCh-H--------HHhh--CCEEEECCC
Confidence 46789999931 33 33445667788 89887654 332 1 1344 899999998
No 140
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=23.13 E-value=1.9e+02 Score=24.89 Aligned_cols=68 Identities=12% Similarity=0.071 Sum_probs=43.8
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
+..+|+++.-. ....+..--..+...+++ .|+++... ...+|.+.-.+.++.+..+ ++|-||..+...
T Consensus 7 ~~~~Igvi~~~----~~~~~~~~~~gi~~~~~~-~g~~~~~~-~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~~ 74 (288)
T 2qu7_A 7 RSNIIAFIVPD----QNPFFTEVLTEISHECQK-HHLHVAVA-SSEENEDKQQDLIETFVSQ-NVSAIILVPVKS 74 (288)
T ss_dssp CEEEEEEEESS----CCHHHHHHHHHHHHHHGG-GTCEEEEE-ECTTCHHHHHHHHHHHHHT-TEEEEEECCSSS
T ss_pred CCCEEEEEECC----CCchHHHHHHHHHHHHHH-CCCEEEEE-eCCCCHHHHHHHHHHHHHc-CccEEEEecCCC
Confidence 34578887743 122222333455667888 99987654 3466777777788887765 599999876543
No 141
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=23.11 E-value=92 Score=29.44 Aligned_cols=69 Identities=10% Similarity=0.060 Sum_probs=44.0
Q ss_pred EEEEecCCCccCC-eee-----cCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHH--HHHHHHhCCCC-cEEEEeCCc
Q psy7342 201 HLLALVSDRCFNK-ESE-----DKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKD--KLKYWVDQSKV-DLIFTSGGT 270 (338)
Q Consensus 201 VaIIstGdEl~~G-~i~-----DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~--aL~~a~~~~~~-DlVITTGGt 270 (338)
..|+..||.+..| .-. ..=...|...|.. .++++...++-.+.-..+.+ .+.+.+..... |+||..-|+
T Consensus 163 ~~Iv~lGDSiT~G~~g~~~~~~~~w~~~L~~~L~~-~~~~v~N~GisG~tt~~~l~~~rl~~~l~~~~p~d~VvI~~G~ 240 (375)
T 2o14_A 163 RTIYVGGDSTVCNYYPLNSSKQAGWGQMLPHYIDK-HTFQVRNMASGGQIARGFRNDGQLEAILKYIKPGDYFMLQLGI 240 (375)
T ss_dssp CEEEEEECTTTSCCSSTTTCSBCCHHHHGGGTSCT-TTCEEEECCCTTCCHHHHHHSSHHHHHHTTCCTTCEEEEECCT
T ss_pred cEEEEecCccccCCcCCCCCCCCCHHHHHHHHhcc-CCceEEEeccCCCcHhhhhhcccHHHHHHhCCCCCEEEEEEEc
Confidence 4788899999887 321 1112334444433 34678999998888766553 56666654446 999887765
No 142
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=23.03 E-value=1.6e+02 Score=26.32 Aligned_cols=81 Identities=7% Similarity=0.160 Sum_probs=52.9
Q ss_pred eEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcC------------------CCHHHHHHHHHHHHhCCCC
Q psy7342 200 CHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVP------------------DEMEEIKDKLKYWVDQSKV 261 (338)
Q Consensus 200 rVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~------------------Dd~e~I~~aL~~a~~~~~~ 261 (338)
|++||+=|.. --|..++..|.+ .|++|.-...-. -|++.+++.+++. . ..
T Consensus 12 K~alVTGas~--------GIG~aia~~la~-~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~-g--~i 79 (242)
T 4b79_A 12 QQVLVTGGSS--------GIGAAIAMQFAE-LGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEAL-P--RL 79 (242)
T ss_dssp CEEEEETTTS--------HHHHHHHHHHHH-TTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHC-S--CC
T ss_pred CEEEEeCCCC--------HHHHHHHHHHHH-CCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhc-C--CC
Confidence 5666654442 235666666666 677665444322 1467777777653 3 48
Q ss_pred cEEEEeCCccCCCCCChHHHHHhccccccCC
Q psy7342 262 DLIFTSGGTGMSPRDVTPEAMNHLIDKKVPC 292 (338)
Q Consensus 262 DlVITTGGts~G~~D~t~eal~~l~~~~lpG 292 (338)
|++|-+-|.+....|+..+-.+++++.-+-|
T Consensus 80 DiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g 110 (242)
T 4b79_A 80 DVLVNNAGISRDREEYDLATFERVLRLNLSA 110 (242)
T ss_dssp SEEEECCCCCCGGGGGSHHHHHHHHHHHTHH
T ss_pred CEEEECCCCCCCcccCCHHHHHHHHHHhhHH
Confidence 9999999988777788888888877654433
No 143
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=22.93 E-value=1.9e+02 Score=25.01 Aligned_cols=79 Identities=10% Similarity=0.070 Sum_probs=50.1
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEc--CCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCV--PDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV--~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
-+|+|+||.-|+.=. .-..-....|++ +|+.. ..+++ --.++.+.+..+++-++ ++++||...|.+
T Consensus 10 ~~~~V~IimGS~SD~------~v~~~a~~~L~~-~Gi~~-dv~V~SaHR~p~~l~~~~~~a~~~-g~~ViIa~AG~a--- 77 (170)
T 1xmp_A 10 MKSLVGVIMGSTSDW------ETMKYACDILDE-LNIPY-EKKVVSAHRTPDYMFEYAETARER-GLKVIIAGAGGA--- 77 (170)
T ss_dssp -CCSEEEEESSGGGH------HHHHHHHHHHHH-TTCCE-EEEECCTTTSHHHHHHHHHHTTTT-TCCEEEEEEESS---
T ss_pred CCCcEEEEECcHHHH------HHHHHHHHHHHH-cCCCE-EEEEEeccCCHHHHHHHHHHHHhC-CCcEEEEECCch---
Confidence 479999998664311 112334556888 99874 44444 35678887777766554 589888766553
Q ss_pred CCChHHHHHhcccc
Q psy7342 275 RDVTPEAMNHLIDK 288 (338)
Q Consensus 275 ~D~t~eal~~l~~~ 288 (338)
-..|-++..+-..
T Consensus 78 -a~LpgvvA~~t~~ 90 (170)
T 1xmp_A 78 -AHLPGMVAAKTNL 90 (170)
T ss_dssp -CCHHHHHHTTCCS
T ss_pred -hhhHHHHHhccCC
Confidence 3578888776544
No 144
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=22.43 E-value=1.1e+02 Score=31.24 Aligned_cols=77 Identities=18% Similarity=0.076 Sum_probs=52.0
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCCCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRD 276 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~~D 276 (338)
.+++|.+.+.+. ...|-...++..+|+. .|++|++.+.- =..+.|.+++.+. ++|+|..|+-... ..+
T Consensus 97 ~~~kVLlatv~G-----D~HdiG~~iva~~L~~-~G~eVi~LG~~-vP~e~iv~aa~~~----~~diVgLS~l~t~-~~~ 164 (579)
T 3bul_A 97 TNGKMVIATVKG-----DVHDIGKNIVGVVLQC-NNYEIVDLGVM-VPAEKILRTAKEV----NADLIGLSGLITP-SLD 164 (579)
T ss_dssp CSCEEEEEEBTT-----CCCCHHHHHHHHHHHT-TTCEEEECCSS-BCHHHHHHHHHHH----TCSEEEEECCSTH-HHH
T ss_pred CCCeEEEEECCC-----CCchHHHHHHHHHHHH-CCCEEEECCCC-CCHHHHHHHHHHc----CCCEEEEEecCCC-CHH
Confidence 367777776654 4567777888889999 99999999873 3455666665542 3899999985532 234
Q ss_pred ChHHHHHhc
Q psy7342 277 VTPEAMNHL 285 (338)
Q Consensus 277 ~t~eal~~l 285 (338)
.+++.++.+
T Consensus 165 ~m~~~i~~L 173 (579)
T 3bul_A 165 EMVNVAKEM 173 (579)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555444
No 145
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=22.39 E-value=3.3e+02 Score=23.20 Aligned_cols=73 Identities=8% Similarity=-0.023 Sum_probs=47.8
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcC---------CCHHHHHHHHHHHHhC-CCCcEEEEeC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVP---------DEMEEIKDKLKYWVDQ-SKVDLIFTSG 268 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~---------Dd~e~I~~aL~~a~~~-~~~DlVITTG 268 (338)
.||+|+++-. ..........+++ .|+++....... .+++.+.+.++++.+. .++|.||..
T Consensus 109 ~rvgvlt~~~--------~~~~~~~~~~l~~-~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~gadaIvLg- 178 (223)
T 2dgd_A 109 RKLWIGTPYI--------KERTLEEVEWWRN-KGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKADAVYIA- 178 (223)
T ss_dssp CEEEEEESSC--------HHHHHHHHHHHHT-TTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTSSEEEEC-
T ss_pred CeEEEEeCCc--------hHHHHHHHHHHHh-CCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCCCEEEEe-
Confidence 4789997533 2334577789999 999876554322 2566777877776432 048998765
Q ss_pred CccCCCCCChHHH
Q psy7342 269 GTGMSPRDVTPEA 281 (338)
Q Consensus 269 Gts~G~~D~t~ea 281 (338)
.|.+..-++..+.
T Consensus 179 CT~l~~~~~~~~l 191 (223)
T 2dgd_A 179 CTALSTYEAVQYL 191 (223)
T ss_dssp CTTSCCTTHHHHH
T ss_pred CCcccHHHHHHHH
Confidence 8888876655443
No 146
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=22.33 E-value=2.7e+02 Score=23.69 Aligned_cols=64 Identities=3% Similarity=-0.086 Sum_probs=39.0
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
.+|+++...- ....+..-...+...+++ .|+++.... ..+|.+.-.+.++.+..+ ++|-||..+
T Consensus 2 ~~Igvi~~~~---~~~f~~~~~~gi~~~~~~-~g~~~~~~~-~~~~~~~~~~~i~~l~~~-~vdgiIi~~ 65 (271)
T 2dri_A 2 DTIALVVSTL---NNPFFVSLKDGAQKEADK-LGYNLVVLD-SQNNPAKELANVQDLTVR-GTKILLINP 65 (271)
T ss_dssp CEEEEEESCS---SSHHHHHHHHHHHHHHHH-HTCEEEEEE-CTTCHHHHHHHHHHHTTT-TEEEEEECC
T ss_pred cEEEEEecCC---CCHHHHHHHHHHHHHHHH-cCcEEEEeC-CCCCHHHHHHHHHHHHHc-CCCEEEEeC
Confidence 4677775321 111222223445667888 899876543 456777666777777654 599888865
No 147
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=22.32 E-value=1.6e+02 Score=27.72 Aligned_cols=80 Identities=18% Similarity=0.102 Sum_probs=46.0
Q ss_pred ceEEEEecCCCccCCeeecC-cHHHHHHHHHcccCCEEEEEEEcCCC-------HHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 199 TCHLLALVSDRCFNKESEDK-SGPLLAQLLQEDFQHAHILKTCVPDE-------MEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~Ds-N~~~L~~lL~~~~G~~v~~~~iV~Dd-------~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
=+|+|++-++-+. ++..+. .-....+.|++ +|+++.....+-.. .++=.+.|.+++.+..+|.|+++-|
T Consensus 6 D~I~ivaPSs~~~-~~~~~~~~~~~~~~~L~~-~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG- 82 (346)
T 4eys_A 6 STIGIVSLSSGII-GEDFVKHEVDLGIQRLKD-LGLNPIFLPHSLKGLDFIKDHPEARAEDLIHAFSDDSIDMILCAIG- 82 (346)
T ss_dssp CEEEEECSSCCGG-GSGGGHHHHHHHHHHHHH-TTCEEEECTTTTSCHHHHHHCHHHHHHHHHHHHHCTTCCEEEECCC-
T ss_pred cEEEEEeCCCccc-ccccCHHHHHHHHHHHHh-CCCEEEECCchhccCCccCCCHHHHHHHHHHHhhCCCCCEEEEccc-
Confidence 4688988766431 111111 22334567899 99999987666543 2333445556665556899996644
Q ss_pred cCCCCCChHHH
Q psy7342 271 GMSPRDVTPEA 281 (338)
Q Consensus 271 s~G~~D~t~ea 281 (338)
|-|..-+.+..
T Consensus 83 G~g~~rlLp~L 93 (346)
T 4eys_A 83 GDDTYRLLPYL 93 (346)
T ss_dssp CSCGGGGHHHH
T ss_pred ccCHHHHHHHh
Confidence 34444455544
No 148
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=22.21 E-value=87 Score=27.91 Aligned_cols=58 Identities=10% Similarity=-0.071 Sum_probs=36.0
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHH-------HHHHHHhCCCCcEEEEeCC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKD-------KLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~-------aL~~a~~~~~~DlVITTGG 269 (338)
.+|+||=.|. -|..+...|.+ .|+++..+..-++..+.+.+ .+.+++.+ +|+||++=.
T Consensus 2 ~~I~iiG~G~----------mG~~~a~~l~~-~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~--advvi~~v~ 66 (287)
T 3pdu_A 2 TTYGFLGLGI----------MGGPMAANLVR-AGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAA--CDITIAMLA 66 (287)
T ss_dssp CCEEEECCST----------THHHHHHHHHH-HTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHH--CSEEEECCS
T ss_pred CeEEEEccCH----------HHHHHHHHHHH-CCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHc--CCEEEEEcC
Confidence 3577776554 35666777777 78877777665555555543 24455554 788887643
No 149
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=22.16 E-value=1.3e+02 Score=27.97 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=36.4
Q ss_pred cHHHHHHHHHcccCCEEEEEEEcCC-CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 219 SGPLLAQLLQEDFQHAHILKTCVPD-EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 219 N~~~L~~lL~~~~G~~v~~~~iV~D-d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
....+...|++ .|+++..+.-.|+ +.+.+.+. +.+.+.++|+||-.||=|+.+
T Consensus 49 ~~~~v~~~L~~-~g~~~~~~~~~~~~~~~~v~~~--~~~~~~~~d~IIavGGGsv~D 102 (354)
T 3ce9_A 49 FGETIEKSIKS-SNIEIEAVETVKNIDFDEIGTN--AFKIPAEVDALIGIGGGKAID 102 (354)
T ss_dssp HHHHHHHHHHT-TTCEEEEEEEECCCBHHHHHHH--HTTSCTTCCEEEEEESHHHHH
T ss_pred HHHHHHHHHHH-cCCeEEEEecCCCCCHHHHHHH--HHhhhcCCCEEEEECChHHHH
Confidence 45677788888 8988755542444 56666665 444445699999999877665
No 150
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=21.88 E-value=1.3e+02 Score=27.74 Aligned_cols=51 Identities=18% Similarity=0.248 Sum_probs=32.6
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCcc
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTG 271 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts 271 (338)
.++++|+.-.+. . ...+.++|++ .|+++.... +..+ .++. +|+||+.||=|
T Consensus 29 ~mki~iv~~~~~--------~-~~~l~~~L~~-~g~~v~~~~---~~~~--------~~~~--~DlvIvlGGDG 79 (278)
T 1z0s_A 29 GMRAAVVYKTDG--------H-VKRIEEALKR-LEVEVELFN---QPSE--------ELEN--FDFIVSVGGDG 79 (278)
T ss_dssp -CEEEEEESSST--------T-HHHHHHHHHH-TTCEEEEES---SCCG--------GGGG--SSEEEEEECHH
T ss_pred ceEEEEEeCCcH--------H-HHHHHHHHHH-CCCEEEEcc---cccc--------ccCC--CCEEEEECCCH
Confidence 356777764332 1 6778999999 999875422 2111 2233 89999999855
No 151
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=21.65 E-value=73 Score=28.29 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=24.8
Q ss_pred HHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccC
Q psy7342 225 QLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGM 272 (338)
Q Consensus 225 ~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~ 272 (338)
.+.++ +|+.+.....-.-+.+++.+.|++ .++|+||+.|=.-+
T Consensus 52 ~~A~~-~gIp~~~~~~~~~~~~~~~~~L~~----~~~Dlivlagy~~I 94 (215)
T 3kcq_A 52 LIAQS-YGIPTFVVKRKPLDIEHISTVLRE----HDVDLVCLAGFMSI 94 (215)
T ss_dssp HHHHH-TTCCEEECCBTTBCHHHHHHHHHH----TTCSEEEESSCCSC
T ss_pred HHHHH-cCCCEEEeCcccCChHHHHHHHHH----hCCCEEEEeCCceE
Confidence 45667 888766543321122445555444 35899999885444
No 152
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=21.64 E-value=1.4e+02 Score=25.39 Aligned_cols=73 Identities=14% Similarity=0.096 Sum_probs=45.5
Q ss_pred cHHHHHHHHHcccCCEEEEEEEc-----------C-C--CHHHHHHHHHHHHhC---CCCcEEEEeCCccCC-C--CCCh
Q psy7342 219 SGPLLAQLLQEDFQHAHILKTCV-----------P-D--EMEEIKDKLKYWVDQ---SKVDLIFTSGGTGMS-P--RDVT 278 (338)
Q Consensus 219 N~~~L~~lL~~~~G~~v~~~~iV-----------~-D--d~e~I~~aL~~a~~~---~~~DlVITTGGts~G-~--~D~t 278 (338)
-|..+...|.+ .|++++-...- . | |++.+++.+++..++ ++.|+||-+.|.... + .+..
T Consensus 15 IG~~~a~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~ 93 (236)
T 1ooe_A 15 LGSAILEFFKK-NGYTVLNIDLSANDQADSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDF 93 (236)
T ss_dssp HHHHHHHHHHH-TTEEEEEEESSCCTTSSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTSTTH
T ss_pred HHHHHHHHHHH-CCCEEEEEecCccccccccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEEEECCcccCCCCCcccCC
Confidence 46677778878 88877654321 1 1 356677666665543 248999999887542 2 4566
Q ss_pred HHHHHhccccccCC
Q psy7342 279 PEAMNHLIDKKVPC 292 (338)
Q Consensus 279 ~eal~~l~~~~lpG 292 (338)
.+.+++..+.-+-|
T Consensus 94 ~~~~~~~~~~N~~g 107 (236)
T 1ooe_A 94 VKNADLMIKQSVWS 107 (236)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHH
Confidence 67666666554444
No 153
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=21.58 E-value=2.8e+02 Score=24.65 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=45.8
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
+..+|+++.... ......+..--..+...+++ .|+.+.... ..+|.+.-.+.++.+..+ ++|-||..+.
T Consensus 60 ~~~~Igvi~~~~-~~~~~~~~~~~~gi~~~a~~-~g~~~~~~~-~~~~~~~~~~~~~~l~~~-~vdgiIi~~~ 128 (338)
T 3dbi_A 60 STQTLGLVVTNT-LYHGIYFSELLFHAARMAEE-KGRQLLLAD-GKHSAEEERQAIQYLLDL-RCDAIMIYPR 128 (338)
T ss_dssp CCSEEEEEECTT-TTSTTHHHHHHHHHHHHHHH-TTCEEEEEE-CTTSHHHHHHHHHHHHHT-TCSEEEECCS
T ss_pred CCCEEEEEecCC-cccChhHHHHHHHHHHHHHH-CCCEEEEEe-CCCChHHHHHHHHHHHhC-CCCEEEEeCC
Confidence 456788887542 11222333334556777888 999877655 567777777788877775 5999998763
No 154
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=21.47 E-value=2.7e+02 Score=23.35 Aligned_cols=67 Identities=12% Similarity=0.016 Sum_probs=41.7
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
..+|+++...- ....+..--..+...+++ .|+.+... ...++.+...+.++.+..+ ++|-||..+..
T Consensus 2 s~~Igvi~~~~---~~~~~~~~~~gi~~~~~~-~g~~~~~~-~~~~~~~~~~~~~~~l~~~-~vdgiI~~~~~ 68 (255)
T 1byk_A 2 DKVVAIIVTRL---DSLSENLAVQTMLPAFYE-QGYDPIMM-ESQFSPQLVAEHLGVLKRR-NIDGVVLFGFT 68 (255)
T ss_dssp CCEEEEEESCT---TCHHHHHHHHHHHHHHHH-HTCEEEEE-ECTTCHHHHHHHHHHHHTT-TCCEEEEECCT
T ss_pred CCEEEEEeCCC---CCccHHHHHHHHHHHHHH-cCCEEEEE-eCCCcHHHHHHHHHHHHhc-CCCEEEEecCc
Confidence 35677776321 112222233455667888 89987655 3456777777777777655 59998887643
No 155
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=21.47 E-value=75 Score=35.79 Aligned_cols=60 Identities=8% Similarity=0.026 Sum_probs=38.3
Q ss_pred cCceEEEEecCCCccCCeeecCcH-HHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSG-PLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~-~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
.+|||+||.-+- +|. .-+...+++ .|+++....+ .| +... ...+++ +|.||..||-|.|+
T Consensus 1046 ~~pkVaIi~~~G---------~N~~~~~~~A~~~-aG~~~~~v~~-~d----l~~~-~~~l~~--~d~lvlPGGfSygD 1106 (1303)
T 3ugj_A 1046 ARPKVAVLREQG---------VNSHVEMAAAFHR-AGFDAIDVHM-SD----LLGG-RIGLGN--FHALVACGGFSYGD 1106 (1303)
T ss_dssp CCCEEEEEECTT---------CCCHHHHHHHHHH-TTCEEEEEEH-HH----HHTT-SCCGGG--CSEEEECCSCGGGG
T ss_pred CCCEEEEEecCC---------cCCHHHHHHHHHH-hCCceEEEee-cc----cccC-cccHhh--CCEEEECCCCcchh
Confidence 478999998532 344 456778888 9998765532 11 1000 012344 89999999988765
No 156
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=21.43 E-value=42 Score=30.96 Aligned_cols=61 Identities=13% Similarity=0.066 Sum_probs=39.1
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccC-CEEEEEEEc--CCCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQ-HAHILKTCV--PDEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G-~~v~~~~iV--~Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
++.||.|| +|+. +.-++....+|..+|++ .| +++....-. +.|.+.+ ...+++ +|+||..-
T Consensus 3 ~~~kvLiv-~G~~---~H~~~~~~~~l~~~l~~-~g~f~V~~~~d~~~~~d~~~f----~~~L~~--~D~vV~~~ 66 (281)
T 4e5v_A 3 KPIKTLLI-TGQN---NHNWQVSHVVLKQILEN-SGRFDVDFVISPEQGKDMSGF----VLDFSP--YQLVVLDY 66 (281)
T ss_dssp CCEEEEEE-ESCC---SSCHHHHHHHHHHHHHH-TTSEEEEEEECCCTTSCCTTC----CCCCTT--CSEEEECC
T ss_pred CceEEEEE-cCCC---CCChHHHHHHHHHHHHh-cCCEEEEEEeCCccccchhHH----hhhhhc--CCEEEEeC
Confidence 46777777 6765 33367778999999999 88 887665432 1222333 123444 89999533
No 157
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=21.39 E-value=2.6e+02 Score=24.35 Aligned_cols=47 Identities=9% Similarity=0.082 Sum_probs=28.4
Q ss_pred HHHHHHcccCCEEEEEEEc-CCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 223 LAQLLQEDFQHAHILKTCV-PDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 223 L~~lL~~~~G~~v~~~~iV-~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
...+.++ +|+.+.....- -.+.++..+.+.+.+.+.++|+||+.|=.
T Consensus 43 ~~~~A~~-~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~ 90 (216)
T 2ywr_A 43 AIERCKK-HNVECKVIQRKEFPSKKEFEERMALELKKKGVELVVLAGFM 90 (216)
T ss_dssp HHHHHHH-HTCCEEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHH-cCCCEEEeCcccccchhhhhHHHHHHHHhcCCCEEEEeCch
Confidence 4556677 88876543322 13455555555555655569999988743
No 158
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=21.38 E-value=1.4e+02 Score=28.04 Aligned_cols=52 Identities=13% Similarity=0.221 Sum_probs=37.1
Q ss_pred HHHHHHHHcccCCEEEEEE-EcCC-CHHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 221 PLLAQLLQEDFQHAHILKT-CVPD-EMEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~-iV~D-d~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
..+.+.|++ .|+++..+. +.++ +.+.+.+.++.+.+. ++|+||-.||-|+.+
T Consensus 59 ~~v~~~L~~-~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~-~~d~IIavGGGsv~D 112 (371)
T 1o2d_A 59 DDLKKLLDE-TEISYEIFDEVEENPSFDNVMKAVERYRND-SFDFVVGLGGGSPMD 112 (371)
T ss_dssp HHHHHHHHH-TTCEEEEEEEECSSCBHHHHHHHHHHHTTS-CCSEEEEEESHHHHH
T ss_pred HHHHHHHHH-cCCeEEEeCCccCCCCHHHHHHHHHHHHhc-CCCEEEEeCChHHHH
Confidence 567778888 898765444 4454 566777777666554 699999999977654
No 159
>1rlz_A DHS, deoxyhypusine synthase; rossman fold, NAD cofactor, spermid transferase; HET: NAD; 2.15A {Homo sapiens} SCOP: c.31.1.1 PDB: 1roz_A* 1rqd_A* 1dhs_A*
Probab=21.36 E-value=41 Score=32.67 Aligned_cols=24 Identities=29% Similarity=0.682 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 247 EIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 247 ~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
-+++.|..++++.-.|+||||||.
T Consensus 111 GlR~iI~~Li~~~~VDvIVTTggg 134 (369)
T 1rlz_A 111 GIRETIRYLVQHNMVDVLVTTAGG 134 (369)
T ss_dssp THHHHHHHHHHTTCCSEEEECHHH
T ss_pred hHHHHHHHHHHcCCeeEEEccCCc
Confidence 577888888887779999999986
No 160
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=21.30 E-value=36 Score=28.83 Aligned_cols=65 Identities=11% Similarity=0.071 Sum_probs=39.8
Q ss_pred EEEecCCCccCCeeecCcHHHHHHHHHcccCC-EEEEEEEcCCCHH----HHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 202 LLALVSDRCFNKESEDKSGPLLAQLLQEDFQH-AHILKTCVPDEME----EIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 202 aIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~-~v~~~~iV~Dd~e----~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
.|+..||.+..|.-.+.. .+-..+-+. ++. .+...++-.+... .+.+.+.+ +.. .+|+|+...|+
T Consensus 23 ~i~~lGDSit~G~g~~~~-~~~~~l~~~-l~~~~v~N~g~~G~t~~~~~~~~~~~~~~-~~~-~pd~Vii~~G~ 92 (232)
T 3dc7_A 23 RPAWLGDSITANNGLATV-HYHDILAAD-WDVERSDNLGISGSTIGSRYDAMAVRYQA-IPE-DADFIAVFGGV 92 (232)
T ss_dssp SEEEEESTTTSTTCSSSS-CHHHHHHHH-HTCSCCEEEECTTCCSSTTSSCHHHHGGG-SCT-TCSEEEEECCH
T ss_pred eEEEEcccccccCCCCCC-cHHHHHHHH-hCCceeEEeeeCCcccccChHHHHHHHHh-cCC-CCCEEEEEEec
Confidence 467789999877544433 222222233 555 6788887766555 35555554 322 48999998876
No 161
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=21.29 E-value=2.5e+02 Score=26.52 Aligned_cols=76 Identities=18% Similarity=0.125 Sum_probs=54.3
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHH-------HHHHHHhCCCCcEEEEeCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKD-------KLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~-------aL~~a~~~~~~DlVITTGG 269 (338)
...+++||=.|. -|..++..++. +|+++..+..-+...+...+ .+++++.+ +|+|+.+=-
T Consensus 163 ~gktvGIIG~G~----------IG~~vA~~l~~-~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~--aDvV~l~~P 229 (351)
T 3jtm_A 163 EGKTIGTVGAGR----------IGKLLLQRLKP-FGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPK--CDVIVINMP 229 (351)
T ss_dssp TTCEEEEECCSH----------HHHHHHHHHGG-GCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGG--CSEEEECSC
T ss_pred cCCEEeEEEeCH----------HHHHHHHHHHH-CCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhc--CCEEEECCC
Confidence 456888888774 57888999999 99999988876656655443 47777776 899998766
Q ss_pred ccCCCCCCh-HHHHHhc
Q psy7342 270 TGMSPRDVT-PEAMNHL 285 (338)
Q Consensus 270 ts~G~~D~t-~eal~~l 285 (338)
....-+.++ .+.+..+
T Consensus 230 lt~~t~~li~~~~l~~m 246 (351)
T 3jtm_A 230 LTEKTRGMFNKELIGKL 246 (351)
T ss_dssp CCTTTTTCBSHHHHHHS
T ss_pred CCHHHHHhhcHHHHhcC
Confidence 555555554 4555543
No 162
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=20.93 E-value=3e+02 Score=23.47 Aligned_cols=68 Identities=12% Similarity=0.005 Sum_probs=42.2
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
+..+|+++.-.- ....+..-...+...+++ .|+++... ...+|.+...+.++.+..+ ++|-||..+..
T Consensus 6 ~~~~Ig~i~~~~---~~~~~~~~~~gi~~~~~~-~g~~~~~~-~~~~~~~~~~~~~~~l~~~-~vdgii~~~~~ 73 (289)
T 1dbq_A 6 HTKSIGLLATSS---EAAYFAEIIEAVEKNCFQ-KGYTLILG-NAWNNLEKQRAYLSMMAQK-RVDGLLVMCSE 73 (289)
T ss_dssp --CEEEEEESCT---TSHHHHHHHHHHHHHHHH-HTCEEEEE-ECTTCHHHHHHHHHHHHHT-TCSEEEEECSC
T ss_pred CCCEEEEEeCCC---CChHHHHHHHHHHHHHHH-cCCeEEEE-cCCCChHHHHHHHHHHHhC-CCCEEEEEecc
Confidence 456788887431 111222233445667788 89987654 3456777777788887765 59999887643
No 163
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A
Probab=20.91 E-value=1.1e+02 Score=25.30 Aligned_cols=72 Identities=13% Similarity=-0.037 Sum_probs=47.9
Q ss_pred CceEEEEecCCCccCCeeec-Cc--HHHHHHHHHccc--CCEEEEEEEcCCCHHHHHHHHHH-HHhC---CCCcEEEEeC
Q psy7342 198 STCHLLALVSDRCFNKESED-KS--GPLLAQLLQEDF--QHAHILKTCVPDEMEEIKDKLKY-WVDQ---SKVDLIFTSG 268 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~D-sN--~~~L~~lL~~~~--G~~v~~~~iV~Dd~e~I~~aL~~-a~~~---~~~DlVITTG 268 (338)
.....|+..||.+..|.-.. .+ ...+...|.+ . ++.+...++-.+....+...+.. .+.. ..+|+||...
T Consensus 18 ~~~~~i~~lGDSit~g~~~~~~~~~~~~l~~~l~~-~~~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~~~~~pd~vvi~~ 96 (218)
T 1vjg_A 18 KTQIRICFVGDSFVNGTGDPECLGWTGRVCVNANK-KGYDVTYYNLGIRRDTSSDIAKRWLQEVSLRLHKEYNSLVVFSF 96 (218)
T ss_dssp CEEEEEEEEESHHHHTTTCTTSCHHHHHHHHHHHH-TTEEEEEEEEECTTCCHHHHHHHHHHHHHTTCCTTSEEEEEEEC
T ss_pred CCCceEEEEccccccCCCCCCCCCHHHHHHHHHHh-cCCCeEEEeCCCCCcCHHHHHHHhHHhhhhhhccCCCCEEEEEe
Confidence 34567888999987653221 22 3456667765 4 45678888888887777777765 3432 2479999988
Q ss_pred Cc
Q psy7342 269 GT 270 (338)
Q Consensus 269 Gt 270 (338)
|+
T Consensus 97 G~ 98 (218)
T 1vjg_A 97 GL 98 (218)
T ss_dssp CH
T ss_pred cC
Confidence 76
No 164
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=20.88 E-value=58 Score=26.56 Aligned_cols=61 Identities=8% Similarity=0.012 Sum_probs=42.5
Q ss_pred EEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc
Q psy7342 202 LLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT 270 (338)
Q Consensus 202 aIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt 270 (338)
.|+..||.+..|- +..+...+.. . .+...++-.+....+.+.+.+.+....+|+|+...|+
T Consensus 24 ~i~~~GDSit~g~-----~~~~~~~~~~-~--~v~n~g~~G~~~~~~~~~~~~~~~~~~pd~vvi~~G~ 84 (204)
T 3p94_A 24 NVVFMGNSITDGW-----WPADSTFFIR-N--NFVDRGISGQTTSEMLVRFRQDVINLKPKAVVILAGI 84 (204)
T ss_dssp EEEEEESHHHHTH-----HHHCTTHHHH-H--TEEEEECTTCCHHHHHHHHHHHTGGGCEEEEEEECCH
T ss_pred eEEEEccchhhcc-----cchHHHhccc-C--ceEEcccCcccHHHHHHHHHHHHHhCCCCEEEEEeec
Confidence 7888999887652 1223344544 3 5788888888888888888765543458999988876
No 165
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=20.82 E-value=4e+02 Score=22.79 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=31.7
Q ss_pred HHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q psy7342 221 PLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSG 268 (338)
Q Consensus 221 ~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTG 268 (338)
..+...+++ .|+.+.... ..+|.+.-.+.++.++.+ ++|-||..+
T Consensus 21 ~gi~~~~~~-~g~~~~~~~-~~~~~~~~~~~i~~l~~~-~vdgiIi~~ 65 (283)
T 2ioy_A 21 NGAEEKAKE-LGYKIIVED-SQNDSSKELSNVEDLIQQ-KVDVLLINP 65 (283)
T ss_dssp HHHHHHHHH-HTCEEEEEE-CTTCHHHHHHHHHHHHHT-TCSEEEECC
T ss_pred HHHHHHHHh-cCcEEEEec-CCCCHHHHHHHHHHHHHc-CCCEEEEeC
Confidence 345566788 899876553 356677667778887765 599988865
No 166
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=20.69 E-value=1.4e+02 Score=27.78 Aligned_cols=73 Identities=14% Similarity=0.087 Sum_probs=44.8
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCC-------CHHHHHHHHHHHHhCCCCcEEEEe-CC
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPD-------EMEEIKDKLKYWVDQSKVDLIFTS-GG 269 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~D-------d~e~I~~aL~~a~~~~~~DlVITT-GG 269 (338)
-=+|+|++-++-+- ...+..-....+.|++ +|+++.....+-. +.++=.+.|.+++.+..+|.|+++ ||
T Consensus 12 GD~I~ivaPSs~~~--~~~~~~~~~~~~~L~~-~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG 88 (327)
T 4h1h_A 12 GDEIRIIAPSRSIG--IMADNQVEIAVNRLTD-MGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIGG 88 (327)
T ss_dssp TCEEEEECSSSCGG--GSCHHHHHHHHHHHHH-TTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CCEEEEEeCCCCcC--ccCHHHHHHHHHHHHh-CCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCCc
Confidence 34789998765431 1111222334567899 9999987665432 445555566777766557888865 77
Q ss_pred ccCC
Q psy7342 270 TGMS 273 (338)
Q Consensus 270 ts~G 273 (338)
-|..
T Consensus 89 ~g~~ 92 (327)
T 4h1h_A 89 FNSN 92 (327)
T ss_dssp SCGG
T ss_pred hhHH
Confidence 7653
No 167
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=20.49 E-value=77 Score=27.01 Aligned_cols=82 Identities=15% Similarity=0.048 Sum_probs=50.0
Q ss_pred CceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCE--EEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCCc---cC
Q psy7342 198 STCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHA--HILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGT---GM 272 (338)
Q Consensus 198 ~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~--v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGGt---s~ 272 (338)
..|++|+.+-= ...+.|.-..-....|++ +|.. -+..-.||-..| |--+.+++.+..++|.||+.|=+ +.
T Consensus 10 ~~ri~IV~arf---n~~I~~~Ll~gA~~~l~~-~gv~~~~i~v~~VPGafE-iP~aa~~la~~~~yDavIaLG~VIrG~T 84 (158)
T 1di0_A 10 SFKIAFIQARW---HADIVDEARKSFVAELAA-KTGGSVEVEIFDVPGAYE-IPLHAKTLARTGRYAAIVGAAFVIDGGI 84 (158)
T ss_dssp CEEEEEEEECT---THHHHHHHHHHHHHHHHH-HHTTSEEEEEEEESSGGG-HHHHHHHHHHTSCCSEEEEEEECCCCSS
T ss_pred CCEEEEEEEeC---cHHHHHHHHHHHHHHHHH-cCCCccceEEEECCcHHH-HHHHHHHHHhcCCCCEEEEeeccccCCC
Confidence 46788887431 112222223333445666 7753 356667898877 44455666665679999999988 44
Q ss_pred CCCCChHHHHHh
Q psy7342 273 SPRDVTPEAMNH 284 (338)
Q Consensus 273 G~~D~t~eal~~ 284 (338)
..+|++.....+
T Consensus 85 ~Hfd~Va~~vs~ 96 (158)
T 1di0_A 85 YDHDFVATAVIN 96 (158)
T ss_dssp BCCHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 456777666544
No 168
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=20.31 E-value=2.1e+02 Score=25.30 Aligned_cols=66 Identities=9% Similarity=-0.089 Sum_probs=41.6
Q ss_pred ceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 199 TCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 199 prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
.+|+++.-.. .......-...+...+++ .|+++.......+|.+.-.+.++.++.+ ++|.||..+-
T Consensus 4 ~~Igvi~~~~---~~~~~~~~~~g~~~~~~~-~g~~~~~~~~~~~d~~~q~~~i~~li~~-~vdgiii~~~ 69 (316)
T 1tjy_A 4 ERIAFIPKLV---GVGFFTSGGNGAQEAGKA-LGIDVTYDGPTEPSVSGQVQLVNNFVNQ-GYDAIIVSAV 69 (316)
T ss_dssp CEEEEECSSS---SSHHHHHHHHHHHHHHHH-HTCEEEECCCSSCCHHHHHHHHHHHHHT-TCSEEEECCS
T ss_pred CEEEEEeCCC---CChHHHHHHHHHHHHHHH-hCCEEEEECCCCCCHHHHHHHHHHHHHc-CCCEEEEeCC
Confidence 4677775321 111222334456667888 9988765433456777777888888876 5999988653
No 169
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=20.12 E-value=1.6e+02 Score=26.33 Aligned_cols=43 Identities=14% Similarity=0.154 Sum_probs=28.9
Q ss_pred ecCcHHHHHHHHHcccCCEEEEEE------EcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 216 EDKSGPLLAQLLQEDFQHAHILKT------CVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 216 ~DsN~~~L~~lL~~~~G~~v~~~~------iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
+......+..+|+. .++++.... -.|++.+ .+++ +|+||..+-
T Consensus 38 ~~~~~~~l~~aL~~-~~~~v~~~~~~~~~~~fp~~~~--------~L~~--yDvIIl~~~ 86 (256)
T 2gk3_A 38 YEEGATWLLECLRK-GGVDIDYMPAHTVQIAFPESID--------ELNR--YDVIVISDI 86 (256)
T ss_dssp EEESCHHHHHHHHH-TTCEEEEECHHHHHHCCCCSHH--------HHHT--CSEEEEESC
T ss_pred ccccHHHHHHHHHh-cCceEEEEecccchhhCCcChh--------HHhc--CCEEEEeCC
Confidence 34455678888888 899988774 3444422 3444 899998863
No 170
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=20.07 E-value=2.6e+02 Score=24.01 Aligned_cols=67 Identities=9% Similarity=0.023 Sum_probs=42.4
Q ss_pred cCceEEEEecCCCccCCeeecCcHHHHHHHHHcccCCEEEEEEEcCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q psy7342 197 RSTCHLLALVSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGG 269 (338)
Q Consensus 197 ~~prVaIIstGdEl~~G~i~DsN~~~L~~lL~~~~G~~v~~~~iV~Dd~e~I~~aL~~a~~~~~~DlVITTGG 269 (338)
+..+|+++.-.- ....+..--..+...+++ .|+++.... ..+|.+...+.++.+..+ ++|-||..+.
T Consensus 7 ~~~~Igvi~~~~---~~~~~~~~~~gi~~~~~~-~g~~~~~~~-~~~~~~~~~~~~~~l~~~-~vdgiI~~~~ 73 (285)
T 3c3k_A 7 KTGMLLVMVSNI---ANPFCAAVVKGIEKTAEK-NGYRILLCN-TESDLARSRSCLTLLSGK-MVDGVITMDA 73 (285)
T ss_dssp CCCEEEEEESCT---TSHHHHHHHHHHHHHHHH-TTCEEEEEE-CTTCHHHHHHHTHHHHTT-CCSEEEECCC
T ss_pred CCCEEEEEeCCC---CCchHHHHHHHHHHHHHH-cCCEEEEEe-CCCCHHHHHHHHHHHHhC-CCCEEEEeCC
Confidence 456788887421 112222233445667788 899876543 456777777777777765 5999998764
No 171
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=20.04 E-value=1.5e+02 Score=27.66 Aligned_cols=53 Identities=13% Similarity=0.116 Sum_probs=35.4
Q ss_pred cHHHHHHHHHcccCCEEEEEEEcCCC--HHHHHHHHHHHHhCCCCcEEEEeCCccCCC
Q psy7342 219 SGPLLAQLLQEDFQHAHILKTCVPDE--MEEIKDKLKYWVDQSKVDLIFTSGGTGMSP 274 (338)
Q Consensus 219 N~~~L~~lL~~~~G~~v~~~~iV~Dd--~e~I~~aL~~a~~~~~~DlVITTGGts~G~ 274 (338)
-...+...|++ .|+++.. .+...+ .+.+.+.++.+.+. ++|+||-.||=|+.+
T Consensus 46 ~~~~v~~~L~~-~g~~~~~-~~~~ge~~~~~v~~~~~~~~~~-~~d~IIavGGGsv~D 100 (370)
T 1jq5_A 46 AGHTIVNELKK-GNIAAEE-VVFSGEASRNEVERIANIARKA-EAAIVIGVGGGKTLD 100 (370)
T ss_dssp THHHHHHHHHT-TTCEEEE-EECCSSCBHHHHHHHHHHHHHT-TCSEEEEEESHHHHH
T ss_pred HHHHHHHHHHH-cCCeEEE-EeeCCCCCHHHHHHHHHHHHhc-CCCEEEEeCChHHHH
Confidence 35667788888 8988742 333332 44666666655554 699999999977765
Done!