RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7342
(338 letters)
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum
cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis
thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A
1uux_A* 1eav_A
Length = 167
Score = 147 bits (373), Expect = 9e-44
Identities = 45/111 (40%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Query: 206 VSDRCFNKESEDKSGPLLAQLLQEDFQ----HAHILKTCVPDEMEEIKDKLKYWVDQSKV 261
VSD D+SGP ++ + + VPDE+E IKD L+ W D ++
Sbjct: 13 VSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEM 72
Query: 262 DLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR 312
DLI T GGTG +PRDVTPEA +I+++ P + ++ E LK+TP AML+R
Sbjct: 73 DLILTLGGTGFTPRDVTPEATKKVIERETPGLLFVMMQESLKITPFAMLAR 123
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT,
structural genomics, NPPSFA, national PR protein
structural and functional analyses; 1.70A {Aquifex
aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A
2f7y_A 2fuw_A
Length = 178
Score = 147 bits (373), Expect = 1e-43
Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 206 VSDRCFNKESEDKSGPLLAQLLQED-FQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLI 264
+SDR ED SG + L++ + +PDE + I+ L D+ LI
Sbjct: 13 ISDRASKGIYEDISGKAIIDYLKDVIITPFEVEYRVIPDERDLIEKTLIELADEKGCSLI 72
Query: 265 FTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR 312
T+GGTG +PRDVTPEA + +K +P +++ LK P A+LSR
Sbjct: 73 LTTGGTGPAPRDVTPEATEAVCEKMLPGFGELMRQVSLKQVPTAILSR 120
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo
sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Length = 189
Score = 147 bits (373), Expect = 2e-43
Identities = 49/109 (44%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 206 VSDRCFNKESEDKSGPLLAQLLQEDFQHAHIL--KTCVPDEMEEIKDKLKYWVDQSKVDL 263
VSD CF +ED+SG L L+Q+ + VPDE+EEIK+ L W D+ +++L
Sbjct: 22 VSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNL 81
Query: 264 IFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR 312
I T+GGTG +PRDVTPEA +I+++ P + + L VTPL MLSR
Sbjct: 82 ILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSLNVTPLGMLSR 130
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold,
structu genomics, NPPSFA; 1.64A {Thermus thermophilus}
PDB: 3mch_A
Length = 164
Score = 146 bits (370), Expect = 2e-43
Identities = 43/107 (40%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 206 VSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIF 265
VSD+ F E +D + + ++L VPDE IK L+ W D+ +DLI
Sbjct: 9 VSDKGFRGERQDTTHLAIREVLAG-GPFEVAAYELVPDEPPMIKKVLRLWADREGLDLIL 67
Query: 266 TSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR 312
T+GGTG++PRD TPEA L+D++VP + +++ GL+ TP+A LSR
Sbjct: 68 TNGGTGLAPRDRTPEATRELLDREVPGLAELMRLVGLRKTPMAALSR 114
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO
biosynthesis, gephyrin function; 1.45A {Escherichia
coli} SCOP: c.57.1.1 PDB: 1di7_A
Length = 195
Score = 145 bits (367), Expect = 1e-42
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 206 VSDRCFNKESEDKSGPLLAQLLQED-FQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLI 264
+SDR + +DK P L + L + +PDE I+ L VD+ L+
Sbjct: 11 ISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLV 70
Query: 265 FTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR 312
T+GGTG + RDVTP+A + D+++P ++ L P A+LSR
Sbjct: 71 LTTGGTGPARRDVTPDATLAVADREMPGFGEQMRQISLHFVPTAILSR 118
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural
genomics, PSI, protein structure initiative; 1.50A
{Corynebacterium diphtheriae} SCOP: c.57.1.1
Length = 167
Score = 142 bits (359), Expect = 1e-41
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 206 VSDRCFNKESEDKSGPLLAQLLQEDFQHA---HILKTCVPDEMEEIKDKLKYWVDQSKVD 262
VSDR E+K+ PLL +L+ ++ Q I + VP+ + + + + + Q
Sbjct: 13 VSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQ-GAR 71
Query: 263 LIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR 312
I T+GGTG+ ++ TPEA I + +E I G T LA LSR
Sbjct: 72 FIITAGGTGIRAKNQTPEATASFIHTRCEGLEQQILIHGSTHTHLAGLSR 121
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI
biosynthetic protein; 1.80A {Mycobacterium avium subsp}
PDB: 3oi9_A 2g4r_A
Length = 164
Score = 136 bits (345), Expect = 1e-39
Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 206 VSDRCFNKESEDKSGPLLAQLLQE-DFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLI 264
S R + E ED+ GP++ + L + F A V D + + L+ +D VD+I
Sbjct: 15 ASTRASSGEYEDRCGPIITEWLAQQGFSSAQ--PEVVADG-SPVGEALRKAIDD-DVDVI 70
Query: 265 FTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR 312
TSGGTG++P D TP+ ++D +P + I+ GL P ++LSR
Sbjct: 71 LTSGGTGIAPTDSTPDQTVAVVDYLIPGLAEAIRRSGLPKVPTSVLSR 118
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural
genomics, seattle structural genomics center for
infectious disease, ssgcid; HET: B3P; 2.25A
{Mycobacterium marinum} PDB: 3tcr_A
Length = 185
Score = 129 bits (327), Expect = 1e-36
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 206 VSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIF 265
V DR + + ED SGPL+ +LL E V + +I++ L V VDL+
Sbjct: 38 VDDRTAHGD-EDHSGPLVTELLTEA-GFVVDGVVAVEADEVDIRNALNTAVIG-GVDLVV 94
Query: 266 TSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGL-KVTPLAMLSR 312
+ GGTG++PRDVTPE+ ++D+++ I I+ GL A LSR
Sbjct: 95 SVGGTGVTPRDVTPESTREILDREILGIAEAIRASGLSAGIIDAGLSR 142
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B;
3D-structure, structural genomics, NPPSFA; HET: PEG;
1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Length = 178
Score = 119 bits (300), Expect = 7e-33
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 206 VSDRCFNK-----ESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSK 260
+S + K D+SG ++ QLL E+ H I + VPD+ +I + +
Sbjct: 23 ISTSRYEKLLKKEPIVDESGDIIKQLLIEN-GHKIIGYSLVPDDKIKILKAFTDALSIDE 81
Query: 261 VDLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQT---EGLKVTPLAMLSR 312
VD+I ++GGTG SP D+T E + L D+++ + + +V A L++
Sbjct: 82 VDVIISTGGTGYSPTDITVETIRKLFDREIEGFSDVFRLVSFNDPEVKAAAYLTK 136
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous
signal, molybdopterin synthesis, structural genomics,
PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1
PDB: 1r2k_B
Length = 172
Score = 115 bits (291), Expect = 1e-31
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 206 VSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIF 265
VS+R E +D SG L QE H + K V + I+ ++ W+ V ++
Sbjct: 18 VSNRR--GEEDDTSGHYLRDSAQEA-GHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVL 74
Query: 266 TSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGL-KVTPLAMLSR 312
+GGTG++ D PEA+ L D++V + + ++ + SR
Sbjct: 75 ITGGTGLTEGDQAPEALLPLFDREVEGFGEVFRMLSFEEIGTSTLQSR 122
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics,
protein structure initiative, PSI, MCSG, midwest center
for structural genomics; 1.90A {Bacillus cereus} SCOP:
c.57.1.1
Length = 169
Score = 113 bits (286), Expect = 7e-31
Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 206 VSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIF 265
+SD E DKSG LL +LL+E H V D+ E I+ + + VD++
Sbjct: 21 ISDT--RTEETDKSGQLLHELLKEA-GHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVL 77
Query: 266 TSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGL--KVTPLAMLSR 312
T+GGTG++ RDVT EA++ L+DK++ + + + AMLSR
Sbjct: 78 TNGGTGITKRDVTIEAVSALLDKEIVGFGELFRMISYLEDIGSSAMLSR 126
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis
MOEA protein; MOEA molybdopterin, MOCF biosynthesis;
2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1
c.57.1.2
Length = 402
Score = 44.4 bits (106), Expect = 3e-05
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 241 VPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHL 285
D+ E +K ++ V+ D++ SGG +D+T + L
Sbjct: 229 ARDDKESLKALIEKAVNV--GDVVVISGGASGGTKDLTASVIEEL 271
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 9e-05
Identities = 58/379 (15%), Positives = 104/379 (27%), Gaps = 119/379 (31%)
Query: 16 SKVQHG---ILQ---------YTCK-IEQHLVSV-TQDVVDHQLNESNFTQNA----ACI 57
+ Q+ IL + CK ++ S+ +++ +DH + + +
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 58 DERKE--LDNKCEIAHAPN------KIMPNTSEKA-DTEKLNEKLNEGINDHDRHTK-SI 107
++E + E N I + + T E+ + ND+ K ++
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 108 ----DFNGINTSL-----------------GKS---GSSYGSDGCTSAFEVGGEPWPKKK 143
+ + +L GK+ S + W K
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD-FKIFWLNLK 190
Query: 144 KFVVKHSVLPPHINL---AKPEWTEKSQQYSTTQVIRPDTNHAQ-RCSTSMKYWELVRST 199
+VL L P WT +S S I+ + Q +K
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN---IKLRIHSIQAELRRLLKSKPYENC- 246
Query: 200 CHLLAL--VSD----RCFNKE------SEDKSGPLLAQLLQEDFQHA---HILKTCVPDE 244
LL L V + FN + K + L H H T PDE
Sbjct: 247 --LLVLLNVQNAKAWNAFNLSCKILLTTRFKQ--VTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 245 MEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKV 304
++ + L ++D DL PR E L
Sbjct: 303 VKSL---LLKYLDCRPQDL----------PR------------------------EVLTT 325
Query: 305 TPL--AMLSRFKGNCPKKW 321
P ++++ + W
Sbjct: 326 NPRRLSIIAESIRDGLATW 344
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP:
b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Length = 396
Score = 42.5 bits (101), Expect = 1e-04
Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 220 GPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTP 279
+L L+++ F + +PD+ IK+ L+ ++ D++ +GG+ +D
Sbjct: 213 SIMLQGLVEKFFGEPILYGV-LPDDESIIKETLEKAKNE--CDIVLITGGSAFGDKDYAH 269
Query: 280 EAMNHLIDK 288
+ +N L
Sbjct: 270 KFVNLLFHG 278
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A
{Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
PDB: 2fu3_A 1t3e_A
Length = 419
Score = 35.2 bits (82), Expect = 0.023
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 241 VPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAM 282
V D +++ + L + + D+I TSGG M +D + +
Sbjct: 230 VGDNPDDLLNALNEGISR--ADVIITSGGVSMGEKDYLKQVL 269
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure
initiative, MCS midwest center for structural genomics,
unknown function; 2.00A {Thermoplasma acidophilum}
Length = 172
Score = 34.0 bits (79), Expect = 0.027
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 239 TCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEA 281
V D+++EI + V DL+ +SGG G + D+T E
Sbjct: 43 FVVMDDLDEIGWAFR--VALEVSDLVVSSGGLGPTFDDMTVEG 83
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor
biosynthesis, metal binding protein; 1.95A {Escherichia
coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A
1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A
2nrp_A 2nqv_A 2nrs_A 2nqn_A
Length = 411
Score = 32.9 bits (76), Expect = 0.14
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 241 VPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHL 285
+ D+ ++ Q D++ +SGG + D T + L
Sbjct: 226 IRDDPHALRAAFIEADSQ--ADVVISSGGVSVGEADYTKTILEEL 268
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 32.2 bits (74), Expect = 0.26
Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 11/100 (11%)
Query: 221 PLLAQLLQEDFQHAH-ILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTP 279
LA + + + IL+ + D + ++ Y D KV + + R +
Sbjct: 51 ENLAYEIINNTKIILPILEGALYDHILQLDPT--YQRDIEKVHVRIVGIPRVIELRKIRS 108
Query: 280 EAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSRFKGNCPK 319
+ LI + I +++ +K + +K
Sbjct: 109 TDIGKLI--TIDGI--LVKVTPVK--ERIYKATYK--HIH 140
>1tvc_A Methane monooxygenase component C, methane monooxygenase;
FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR
{Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Length = 250
Score = 30.3 bits (69), Expect = 0.68
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 254 YWVDQSKVDLIFTSGGTGMSP 274
++ F +GGTG++P
Sbjct: 111 GLKERGMAPRYFVAGGTGLAP 131
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.0 bits (70), Expect = 0.70
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 23/82 (28%)
Query: 97 INDHDRHTKSIDFN---GINTSLGKSGSSYGSD--------------GCTSAFEVGGEPW 139
+ H TK+ D N IN + G S G+ G A+ + G
Sbjct: 1340 ASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNG--- 1396
Query: 140 PKKKKFVVKHSVLPPHINLAKP 161
++ ++P + N
Sbjct: 1397 ---ALQILNSGIIPGNRNADNV 1415
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium
thermocellum}
Length = 215
Score = 29.5 bits (66), Expect = 1.4
Identities = 8/49 (16%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 242 PDEMEEIKDKLKYWVDQSKVDLIFTSGGT--GMSPRDVTPEAMNHLIDK 288
+ +I + W++ D++F G + ++ +++LID+
Sbjct: 65 GWTIPQIASNINNWLNTHNPDVVFLWIGGNDLLLNGNLNATGLSNLIDQ 113
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase
superfami oxidoreductase; 2.20A {Escherichia coli} SCOP:
b.43.4.2 c.25.1.1
Length = 232
Score = 29.5 bits (67), Expect = 1.5
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 254 YWVDQSKVDLIFTSGGTGMSP 274
+ D + +I +GGTG S
Sbjct: 96 WLRDDEERPMILIAGGTGFSY 116
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 2.8
Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 25/79 (31%)
Query: 258 QSKVDLIFTSGGTGM-----SP--RDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAML 310
Q + G GM S +DV A NH D I I+ P+ +
Sbjct: 1627 QEQ--------GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINN-----PVNLT 1673
Query: 311 SRFKGNCPKKWVKLIRRQN 329
F G K+ I R+N
Sbjct: 1674 IHFGGEKGKR----I-REN 1687
>2r47_A Uncharacterized protein MTH_862; unknown function, structural
genomics, APC5901, PSI-2; 1.88A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 157
Score = 28.0 bits (62), Expect = 3.1
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 8/54 (14%)
Query: 256 VDQSKVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVP--------CIEHIIQTEG 301
+ VD++ GG M E + L++ + C + G
Sbjct: 80 ISPGNVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEGGELMGLCYMDMFARAG 133
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase,
hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA
binding; 2.8A {Sulfolobus solfataricus}
Length = 268
Score = 27.7 bits (62), Expect = 5.3
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 221 PLLAQLLQEDFQ-HAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTP 279
LA + + + IL+ + D + ++ Y D KV + + R +
Sbjct: 57 ENLAYEIINNTKIILPILEGALYDHILQLDPT--YQRDIEKVHVRIVGIPRVIELRKIRS 114
Query: 280 EAMNHLIDKKVPCIEHII 297
+ LI I+ I+
Sbjct: 115 TDIGKLI-----TIDGIL 127
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase;
PLP, structural genomics, NPPSFA; HET: PLP; 1.90A
{Pyrococcus horikoshii}
Length = 386
Score = 27.2 bits (61), Expect = 7.4
Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 245 MEEIKDKLKYWVDQSKVD-LIFTSGGTG 271
+ ++L+ +++ K + L+ S GTG
Sbjct: 55 HMDTVERLREFLEVEKGEVLLVPSSGTG 82
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate,
transferase; HET: PLP SLP; 1.55A {Rattus norvegicus}
PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Length = 432
Score = 27.2 bits (61), Expect = 8.3
Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 29/73 (39%)
Query: 262 DLIFTSGGT-----------------------GMSPRDVTPEAMNHLIDKKV--PCI--- 293
D+IFTSGGT + H I V I
Sbjct: 80 DIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLP 139
Query: 294 -EHIIQTEGLKVT 305
EH+++ + +VT
Sbjct: 140 LEHLVEDQVAEVT 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.402
Gapped
Lambda K H
0.267 0.0592 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,947,329
Number of extensions: 276169
Number of successful extensions: 578
Number of sequences better than 10.0: 1
Number of HSP's gapped: 559
Number of HSP's successfully gapped: 33
Length of query: 338
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 244
Effective length of database: 4,077,219
Effective search space: 994841436
Effective search space used: 994841436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.4 bits)