RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7342
(338 letters)
>d1di6a_ c.57.1.1 (A:) MogA {Escherichia coli [TaxId: 562]}
Length = 190
Score = 97.4 bits (242), Expect = 7e-25
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 206 VSDRCFNKESEDKSGPLLAQLLQED-FQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLI 264
+SDR + +DK P L + L + +PDE I+ L VD+ L+
Sbjct: 10 ISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLV 69
Query: 265 FTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSRFKG 315
T+GGTG + RDVTP+A + D+++P ++ L P A+LSR G
Sbjct: 70 LTTGGTGPARRDVTPDATLAVADREMPGFGEQMRQISLHFVPTAILSRQVG 120
>d1uuya_ c.57.1.1 (A:) Plant CNX1 G domain {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 161
Score = 90.2 bits (223), Expect = 1e-22
Identities = 45/111 (40%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Query: 206 VSDRCFNKESEDKSGPLLAQLLQEDFQ----HAHILKTCVPDEMEEIKDKLKYWVDQSKV 261
VSD D+SGP ++ + + VPDE+E IKD L+ W D ++
Sbjct: 11 VSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEM 70
Query: 262 DLIFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR 312
DLI T GGTG +PRDVTPEA +I+++ P + ++ E LK+TP AML+R
Sbjct: 71 DLILTLGGTGFTPRDVTPEATKKVIERETPGLLFVMMQESLKITPFAMLAR 121
>d2f7wa1 c.57.1.1 (A:2-174) MogA {Shewanella oneidensis [TaxId:
70863]}
Length = 173
Score = 83.7 bits (206), Expect = 6e-20
Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 206 VSDRCFNKESEDKSGPLLAQLLQED-FQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLI 264
VSDR ED SG + L + + +PDE + I+ L D+ LI
Sbjct: 10 VSDRASAGIYEDISGKAIIDTLNDYLTSEWEPIYQVIPDEQDVIETTLIKMADEQDCCLI 69
Query: 265 FTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSRFKGNCPKK 320
T+GGTG + RDVTPEA + D+ +P +++ E LK P A+LSR
Sbjct: 70 VTTGGTGPAKRDVTPEATEAVCDRMMPGFGELMRAESLKFVPTAILSRQTAGLRGD 125
>d2g2ca1 c.57.1.1 (A:1-163) Putative molybdenum cofactor
biosynthesis protein DIP0503 {Corynebacterium
diphtheriae [TaxId: 1717]}
Length = 163
Score = 75.6 bits (185), Expect = 4e-17
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 206 VSDRCFNKESEDKSGPLLAQLLQEDFQH--AHILKTCVPDEMEEIKDKLKYWVDQSKVDL 263
VSDR E+K+ PLL +L+ ++ Q ++ V E + + +
Sbjct: 10 VSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARF 69
Query: 264 IFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR 312
I T+GGTG+ ++ TPEA I + +E I G T LA LSR
Sbjct: 70 IITAGGTGIRAKNQTPEATASFIHTRCEGLEQQILIHGSTHTHLAGLSR 118
>d1jlja_ c.57.1.1 (A:) Gephyrin N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 169
Score = 67.2 bits (163), Expect = 4e-14
Identities = 49/109 (44%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 206 VSDRCFNKESEDKSGPLLAQLLQEDFQHAHIL--KTCVPDEMEEIKDKLKYWVDQSKVDL 263
VSD CF +ED+SG L L+Q+ + VPDE+EEIK+ L W D+ +++L
Sbjct: 10 VSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNL 69
Query: 264 IFTSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGLKVTPLAMLSR 312
I T+GGTG +PRDVTPEA +I+++ P + + L VTPL MLSR
Sbjct: 70 ILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSLNVTPLGMLSR 118
>d1mkza_ c.57.1.1 (A:) MoaB {Escherichia coli [TaxId: 562]}
Length = 170
Score = 64.4 bits (156), Expect = 4e-13
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 206 VSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIF 265
VS+R E +D SG L QE H + K V + I+ ++ W+ V ++
Sbjct: 16 VSNRR--GEEDDTSGHYLRDSAQE-AGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVL 72
Query: 266 TSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGL-KVTPLAMLSRFK-GNCPKKWV 322
+GGTG++ D PEA+ L D++V + + ++ + SR G K +
Sbjct: 73 ITGGTGLTEGDQAPEALLPLFDREVEGFGEVFRMLSFEEIGTSTLQSRAVAGVANKTLI 131
>d1y5ea1 c.57.1.1 (A:12-166) MoaB {Bacillus cereus [TaxId: 1396]}
Length = 155
Score = 63.4 bits (153), Expect = 8e-13
Identities = 40/119 (33%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 206 VSDRCFNKESEDKSGPLLAQLLQEDFQHAHILKTCVPDEMEEIKDKLKYWVDQSKVDLIF 265
+SD E DKSG LL +LL+E H V D+ E I+ + + VD++
Sbjct: 10 ISDTR--TEETDKSGQLLHELLKE-AGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVL 66
Query: 266 TSGGTGMSPRDVTPEAMNHLIDKKVPCIEHIIQTEGL--KVTPLAMLSRFKGNCPKKWV 322
T+GGTG++ RDVT EA++ L+DK++ + + + AMLSR G + V
Sbjct: 67 TNGGTGITKRDVTIEAVSALLDKEIVGFGELFRMISYLEDIGSSAMLSRAIGGTIGRKV 125
>d1luca_ c.1.16.1 (A:) Bacterial luciferase alpha chain, LuxA
{Vibrio harveyi [TaxId: 669]}
Length = 355
Score = 27.5 bits (59), Expect = 2.8
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 246 EEIKDKLKYWVDQSKVDLIFTSGGTGMSPRDVTPEAMNHLIDKKVP 291
EE ++ +D + +D I S ++ +M +P
Sbjct: 305 EECIAIIQQDIDATGIDNICCGFEANGSEEEI-IASMKLFQSDVMP 349
>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase
{Escherichia coli [TaxId: 562]}
Length = 135
Score = 25.2 bits (54), Expect = 7.7
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 257 DQSKVDLIFTSGGTGMSP 274
D + +I +GGTG S
Sbjct: 2 DDEERPMILIAGGTGFSY 19
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.402
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,234,928
Number of extensions: 55370
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 16
Length of query: 338
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 252
Effective length of database: 1,226,816
Effective search space: 309157632
Effective search space used: 309157632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.8 bits)