BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7343
(487 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242003652|ref|XP_002422814.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]
gi|212505672|gb|EEB10076.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]
Length = 540
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 195/341 (57%), Positives = 266/341 (78%), Gaps = 5/341 (1%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
+LGSPRF++APMVDASEL WRLLSRR+G+ LCYTPM + F +++ R+E L S PEDR
Sbjct: 8 KLGSPRFVVAPMVDASELAWRLLSRRHGAQLCYTPMFHSLIFANNERYRKEGLASVPEDR 67
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PLI+QFCGN+ ++ +AA+LAEP+CD +DIN+GCPQ +AKRGHYGA+LQDDWPLL +V
Sbjct: 68 PLIVQFCGNEPDSILKAAQLAEPYCDAVDINLGCPQAIAKRGHYGAFLQDDWPLLKEIVG 127
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
+L++++++PV+CKIR+++DV KTV+YA+MLE AGCQLL VHGRT +Q+G TGLA+WEHI
Sbjct: 128 TLKKSLKIPVTCKIRVFEDVKKTVKYAKMLEEAGCQLLTVHGRTKEQKGPLTGLANWEHI 187
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELAS 384
AVR+ + IPV+ANGNIQC+ D+ CL T GVM+AEGNLYNPA+F G+ P+WE+A+
Sbjct: 188 KAVRENVRIPVLANGNIQCVQDIFRCLEVTKCNGVMSAEGNLYNPAIFEGRYPPSWEMAT 247
Query: 385 EYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
EYLDLV +YP L Y RGH+F + HH+L P+N DVR + + ++D R ++RER+
Sbjct: 248 EYLDLVEKYPCPLSYIRGHLFKIFHHILCEPDNKDVRAELANKSTLEDFRNVTKIIRERY 307
Query: 445 IDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
+HEG +W +S+ ++L LPPW+C+PY RP+PE+
Sbjct: 308 EPFHEGLDVW-----KRNSDSYDLVLPPWLCKPYERPSPEE 343
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 53/65 (81%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
+LGSPRF++APMVDASEL WRLLSRR+G+ LCYTPM + F +++ R+E L S PEDR
Sbjct: 8 KLGSPRFVVAPMVDASELAWRLLSRRHGAQLCYTPMFHSLIFANNERYRKEGLASVPEDR 67
Query: 135 PLIIQ 139
PLI+Q
Sbjct: 68 PLIVQ 72
>gi|383855157|ref|XP_003703084.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Megachile rotundata]
Length = 478
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 204/363 (56%), Positives = 263/363 (72%), Gaps = 8/363 (2%)
Query: 127 LMSTPEDRPL---IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSA 183
+ + P D+P + ++ LGSPR+I+APMVDASEL WRLLSRR+G+HLCYTPM+ +
Sbjct: 4 VAAKPSDQPANSGVEAGNVWEELGSPRYIVAPMVDASELAWRLLSRRHGAHLCYTPMLHS 63
Query: 184 HQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVA 243
F D K R+E L ST EDRPLI+QFCGND + EAA LAEP+CD +DINIGCPQ +A
Sbjct: 64 SVFCRDPKYRREALASTAEDRPLIVQFCGNDPNTILEAALLAEPYCDAVDINIGCPQAIA 123
Query: 244 KRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLA 303
KRG YGA+LQDDW LL +VS+L + + +PV+CK+R++ +++KTVEYARMLE AG +LL
Sbjct: 124 KRGRYGAFLQDDWDLLRRIVSTLSKGLHIPVTCKLRVFAEIDKTVEYARMLESAGARLLT 183
Query: 304 VHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363
VHGRT +Q+G TG+ASWEHI AVR+A+TIPV ANGNIQCL DVE CL +TGV GVM+AE
Sbjct: 184 VHGRTREQKGPQTGMASWEHIKAVRQAVTIPVFANGNIQCLQDVEKCLEETGVHGVMSAE 243
Query: 364 GNLYNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
GNLYNP +F + P+WE A EYLDLV +YP Y RGH+F + H L L EN + R
Sbjct: 244 GNLYNPFIFEARYPPSWEPALEYLDLVERYPAPPSYVRGHLFKLFQHTLCLAENKEEREN 303
Query: 424 VGKTNHIKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTP 483
+ + + ++ + V LR R++ YHEGR W + +NL LPPW+CQPYVR P
Sbjct: 304 LARNSTMESFKSVVYALRNRYLPYHEGRLTWQE-----ETPEYNLKLPPWLCQPYVRHPP 358
Query: 484 EQQ 486
E++
Sbjct: 359 EER 361
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 58/76 (76%)
Query: 64 HSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLR 123
+S + W +LGSPR+I+APMVDASEL WRLLSRR+G+HLCYTPM+ + F D K R
Sbjct: 14 NSGVEAGNVWEELGSPRYIVAPMVDASELAWRLLSRRHGAHLCYTPMLHSSVFCRDPKYR 73
Query: 124 QEILMSTPEDRPLIIQ 139
+E L ST EDRPLI+Q
Sbjct: 74 REALASTAEDRPLIVQ 89
>gi|328789228|ref|XP_623799.3| PREDICTED: tRNA-dihydrouridine synthase 1-like isoform 2 [Apis
mellifera]
Length = 478
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 198/340 (58%), Positives = 254/340 (74%), Gaps = 5/340 (1%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LGSP +I+APMVDASEL WRLLSRR+G+HLCYTPM+ + F D K R+E L ST EDRP
Sbjct: 27 LGSPEYIVAPMVDASELAWRLLSRRHGAHLCYTPMLHSSVFCRDPKYRREALASTAEDRP 86
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
L++QFCGND L EAA LAEP+CD +DINIGCPQ +AKRGHYGA+LQDDW LL +VS+
Sbjct: 87 LVVQFCGNDPSTLLEAALLAEPYCDAVDINIGCPQAIAKRGHYGAFLQDDWNLLQQIVST 146
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + + VPV+CK+R++ +++KTV+YA+MLE AG QLL VHGRT +Q+G TG+ASW+HI
Sbjct: 147 LSKKLHVPVTCKLRVFAEIDKTVKYAQMLEAAGAQLLTVHGRTREQKGPLTGVASWDHIK 206
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
AVR+A+TIPV ANGNIQCL D++ C+ +TGV GVM+AEGNLYNP +F P+WE A E
Sbjct: 207 AVRQAVTIPVFANGNIQCLQDIQKCIEETGVNGVMSAEGNLYNPYIFEACYPPSWEPALE 266
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YLDLV YP Y RGH+F + H L L EN + R + + + ++ R V LR+R++
Sbjct: 267 YLDLVECYPAPASYIRGHLFKLFQHTLCLAENKEERENLARNSTMESFRNVVYTLRDRYL 326
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
YHEGR +W ++ +NL LPPW+CQPYVR PE+
Sbjct: 327 PYHEGRLIWHE-----ETSDYNLKLPPWLCQPYVRHLPEE 361
>gi|380019158|ref|XP_003693481.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Apis florea]
Length = 477
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 198/340 (58%), Positives = 255/340 (75%), Gaps = 5/340 (1%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LGSP++I+APMVDASEL WRLLSRR+G+HLCYTPM+ + F D K R+E L ST EDRP
Sbjct: 26 LGSPQYIVAPMVDASELAWRLLSRRHGAHLCYTPMLHSSVFCRDPKYRREALASTAEDRP 85
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
L++QFCGND L EAA LAEP+CD +DINIGCPQ +AKRGHYGA+LQDDW LL +VS+
Sbjct: 86 LVVQFCGNDPSTLLEAALLAEPYCDAVDINIGCPQAIAKRGHYGAFLQDDWDLLQQIVST 145
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + + VPV+CK+R++ ++NKTV+YA+MLE AG QLL VHGRT +Q+G TG+ASW+HI
Sbjct: 146 LSKKLHVPVTCKLRVFAEINKTVKYAQMLEAAGAQLLTVHGRTREQKGPLTGVASWDHIK 205
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
AVR+A+TIPV ANGNIQCL DV+ C+ +TGV GVM+AEGNLYNP +F P+WE A E
Sbjct: 206 AVRQAVTIPVFANGNIQCLQDVQKCIEETGVNGVMSAEGNLYNPYIFEACYPPSWEPALE 265
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL+L+ YP Y RGH+F + H L L EN + R + + + ++ R V LR+R++
Sbjct: 266 YLNLIECYPAPASYIRGHLFKLFQHTLCLAENKEERENLARNSTMESFRNVVYALRDRYL 325
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
YHEGR +W ++ +NL LPPW+CQPYVR PE+
Sbjct: 326 PYHEGRLIWHE-----ETSDYNLKLPPWLCQPYVRHLPEK 360
>gi|340716031|ref|XP_003396507.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Bombus terrestris]
Length = 479
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/341 (58%), Positives = 257/341 (75%), Gaps = 5/341 (1%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L SPR+++APMVDASEL WRLLSRR+G+HLCYTPM+ + F D K R+E L ST EDRP
Sbjct: 28 LSSPRYVVAPMVDASELAWRLLSRRHGAHLCYTPMLHSSVFCRDPKYRREALTSTAEDRP 87
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LI+QFCGND L EAA LAEP+CD +DINIGCPQ +AKRG YGA+LQDDW LL +VS+
Sbjct: 88 LIVQFCGNDPNTLLEAALLAEPYCDAVDINIGCPQAIAKRGRYGAFLQDDWDLLRRIVST 147
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L ++++VPV+CK+R++ +++KTV+YA+MLE AG +LL VHGRT +Q+G TG+ASW+HI
Sbjct: 148 LSKSLRVPVTCKLRVFAEIDKTVKYAQMLETAGARLLTVHGRTREQKGPLTGIASWDHIK 207
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
AVR+A+TIPV ANGNIQCL D+E C+ +TGV GVM+AEGNLYNP +F + P+WE A E
Sbjct: 208 AVRQAVTIPVFANGNIQCLQDIERCIEETGVHGVMSAEGNLYNPYIFEARYPPSWEPALE 267
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YLDLV +YP Y RGH+F + H L L EN + R + + + ++ R V LR+R++
Sbjct: 268 YLDLVERYPAPPSYIRGHLFKLFQHTLCLAENKEERENLARNSTMESFRNVVYALRDRYL 327
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQQ 486
YHEGR +W MS HNL LPPW+CQPY+R PE+
Sbjct: 328 PYHEGRLIW---QEEMSD--HNLKLPPWLCQPYIRHLPEEN 363
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 59/76 (77%), Gaps = 1/76 (1%)
Query: 65 SSTARSDAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLR 123
S+T+ ++ W L SPR+++APMVDASEL WRLLSRR+G+HLCYTPM+ + F D K R
Sbjct: 16 SATSETNIWENVLSSPRYVVAPMVDASELAWRLLSRRHGAHLCYTPMLHSSVFCRDPKYR 75
Query: 124 QEILMSTPEDRPLIIQ 139
+E L ST EDRPLI+Q
Sbjct: 76 REALTSTAEDRPLIVQ 91
>gi|350396718|ref|XP_003484639.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Bombus impatiens]
Length = 492
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/341 (58%), Positives = 256/341 (75%), Gaps = 5/341 (1%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L SPR+++APMVDASEL WRLLSRR+G+HLCYTPM+ + F D K R+E L ST EDRP
Sbjct: 41 LSSPRYVVAPMVDASELAWRLLSRRHGAHLCYTPMLHSSVFCRDPKYRREALTSTVEDRP 100
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LI+QFCGND L EAA LAEP+CD +DINIGCPQ +AKRG YGA+LQDDW LL +VS+
Sbjct: 101 LIVQFCGNDPNTLLEAALLAEPYCDAVDINIGCPQAIAKRGRYGAFLQDDWDLLRRIVST 160
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L ++++VPV+CK+R++ +++KTV+YA+MLE AG +LL VHGRT +Q+G TG+ASW+HI
Sbjct: 161 LSKSLRVPVTCKLRVFAEIDKTVKYAQMLETAGARLLTVHGRTREQKGPLTGIASWDHIK 220
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
AVR+A+TIPV ANGNIQCL D+E C+ +TGV GVM+AEGNLYNP +F P+WE A E
Sbjct: 221 AVRQAVTIPVFANGNIQCLQDIERCIEETGVHGVMSAEGNLYNPYIFEACYPPSWEPALE 280
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YLDLV +YP Y RGH+F + H L L EN + R + + + ++ R V LR+R++
Sbjct: 281 YLDLVERYPAPPSYIRGHLFKLFQHTLCLAENKEERENLARNSTMESFRNVVYALRDRYL 340
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQQ 486
YHEGR +W MS HNL LPPW+CQPY+R PE+
Sbjct: 341 PYHEGRLIW---QEEMSD--HNLKLPPWLCQPYIRHLPEEN 376
>gi|322780739|gb|EFZ09996.1| hypothetical protein SINV_07882 [Solenopsis invicta]
Length = 1167
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 201/366 (54%), Positives = 260/366 (71%), Gaps = 6/366 (1%)
Query: 121 KLRQEILMSTPEDRPLIIQRT-IFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTP 179
K+ EI S+ ++ +RT ++ LGSPR+I+APMVDASEL WRLLSRR+G+ LCYTP
Sbjct: 696 KIMSEIAESSDKEAVASKKRTNVWEDLGSPRYIVAPMVDASELAWRLLSRRHGAQLCYTP 755
Query: 180 MVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCP 239
M+ + F D K R+E L ST EDRPLI+QFCGND L EAA LAEP+CD IDINIGCP
Sbjct: 756 MLHSSVFCRDPKYRREALASTSEDRPLIVQFCGNDPDILLEAAHLAEPYCDAIDINIGCP 815
Query: 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC 299
Q +AKRGHYGA+LQDDW LL +VS+L+ +++PV+CK+R++ ++ +TVEYA MLE AG
Sbjct: 816 QAIAKRGHYGAFLQDDWDLLKKIVSTLKNGLRIPVTCKLRVFSEIERTVEYACMLEDAGA 875
Query: 300 QLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359
LL VHGRT +Q+G TGLASW+HI AVR A+ IPVIANGNIQC+ D+E C+ + V GV
Sbjct: 876 SLLTVHGRTREQKGPLTGLASWKHIKAVRDAVKIPVIANGNIQCVQDLERCIEEIQVHGV 935
Query: 360 MTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSD 419
M+AEGNLYNP +F WE A EYL+LV QYPV Y RGH+F + HH+L L EN +
Sbjct: 936 MSAEGNLYNPYIFESCYPACWEPALEYLELVEQYPVPASYIRGHLFKLFHHVLCLAENQE 995
Query: 420 VRLLVGKTNHIKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYV 479
R + + ++ + LR+R++ YHEGR +W +NL LPPW+CQPYV
Sbjct: 996 ERESLATNSTMEAFKSVTYALRDRYLSYHEGRLIW-----QTGKTDYNLELPPWLCQPYV 1050
Query: 480 RPTPEQ 485
R P++
Sbjct: 1051 REPPQE 1056
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 60/79 (75%)
Query: 61 KDCHSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK 120
K+ +S R++ W LGSPR+I+APMVDASEL WRLLSRR+G+ LCYTPM+ + F D
Sbjct: 707 KEAVASKKRTNVWEDLGSPRYIVAPMVDASELAWRLLSRRHGAQLCYTPMLHSSVFCRDP 766
Query: 121 KLRQEILMSTPEDRPLIIQ 139
K R+E L ST EDRPLI+Q
Sbjct: 767 KYRREALASTSEDRPLIVQ 785
>gi|91092412|ref|XP_967539.1| PREDICTED: similar to t-diRNAhydrouridine synthase [Tribolium
castaneum]
gi|270004747|gb|EFA01195.1| hypothetical protein TcasGA2_TC010522 [Tribolium castaneum]
Length = 461
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 192/340 (56%), Positives = 256/340 (75%), Gaps = 3/340 (0%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG+P I+APMVDASELPWRLLSR+YG+ LCYTPM+ + F D K R E L S D+P
Sbjct: 8 LGAPTKIVAPMVDASELPWRLLSRKYGAQLCYTPMLHSAIFARDAKYRNEALASCEIDKP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LI+QFCGND K + EAA LA+ HC IDIN+GCPQ +AKRGHYGA+LQD+WPLL +VS
Sbjct: 68 LIVQFCGNDPKVMLEAALLAQDHCCAIDINLGCPQAIAKRGHYGAFLQDEWPLLHEIVSL 127
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L Q ++VP++CK+R ++ V KTV+YA+ML AGC++L VHGRT +Q+G TGLA W ++
Sbjct: 128 LSQRLKVPITCKVRRFESVEKTVDYAKMLVSAGCKMLTVHGRTREQKGPLTGLADWSYVK 187
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
AVR+A+ IPVI+NGNIQC+ DV+ CL +TG GVMTAEGNLYNPALF Q PAWE A E
Sbjct: 188 AVREAVDIPVISNGNIQCMQDVDRCLEETGAVGVMTAEGNLYNPALFMHQNPPAWEPALE 247
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL+LV ++P L Y RGH+F + HH+L++P+N+D+R+ +G N +++ ++ V+++++ +
Sbjct: 248 YLNLVDKFPCPLSYIRGHLFKLFHHVLSIPKNNDLRIQLGAANTLEEFKRIVNVMKDLYE 307
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
+H+G KLW N NL LPPW+CQPYVR PE+
Sbjct: 308 PFHQGTKLWQDTT---ERNTENLILPPWLCQPYVRVCPEE 344
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
D W LG+P I+APMVDASELPWRLLSR+YG+ LCYTPM+ + F D K R E L S
Sbjct: 2 DFWRDTLGAPTKIVAPMVDASELPWRLLSRKYGAQLCYTPMLHSAIFARDAKYRNEALAS 61
Query: 130 TPEDRPLIIQ 139
D+PLI+Q
Sbjct: 62 CEIDKPLIVQ 71
>gi|307182359|gb|EFN69626.1| tRNA-dihydrouridine synthase 1-like [Camponotus floridanus]
Length = 468
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 193/345 (55%), Positives = 248/345 (71%), Gaps = 5/345 (1%)
Query: 141 TIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 200
++ LGSPR I+APMVDASEL WRLLSRR+G+ LCYTPM+ + F D K R+E L ST
Sbjct: 15 NVWEDLGSPRCIIAPMVDASELAWRLLSRRHGAQLCYTPMLHSTVFCRDPKYRREALAST 74
Query: 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
EDRPLI+QFCGND L EAA+LAEP+CD IDINIGCPQ +AKRGHYGA+LQDDW LL
Sbjct: 75 SEDRPLIVQFCGNDPDVLLEAARLAEPYCDAIDINIGCPQAIAKRGHYGAFLQDDWILLN 134
Query: 261 NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320
+VS+L+ + +PV+CK+R++ ++N+TVEYARML+ AG LL +HGRT +Q+G TGLAS
Sbjct: 135 RIVSTLKNGLHIPVTCKLRVFSEINRTVEYARMLQDAGASLLTIHGRTREQKGSLTGLAS 194
Query: 321 WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW 380
WEHI AVR A+ IPVIANGNIQC+ D++ C+ + V GVM+AEGNLYNP +F + W
Sbjct: 195 WEHIKAVRDAVEIPVIANGNIQCMQDLQRCIEEIQVQGVMSAEGNLYNPYIFESRYPACW 254
Query: 381 ELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDML 440
E A EYL+LV QYP Y RGH+F + HH+ L EN + R + + ++ + V L
Sbjct: 255 EPALEYLELVEQYPAPASYIRGHLFKLFHHVFCLTENREERENLATNSSMEAFKNVVYTL 314
Query: 441 RERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
R+R++ YHEG W +NL LPPW+CQPYVR P++
Sbjct: 315 RDRYLPYHEGHLTW-----QTEKTDYNLKLPPWLCQPYVREPPQE 354
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 58/75 (77%)
Query: 65 SSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ 124
+S+ +++ W LGSPR I+APMVDASEL WRLLSRR+G+ LCYTPM+ + F D K R+
Sbjct: 9 TSSKKTNVWEDLGSPRCIIAPMVDASELAWRLLSRRHGAQLCYTPMLHSTVFCRDPKYRR 68
Query: 125 EILMSTPEDRPLIIQ 139
E L ST EDRPLI+Q
Sbjct: 69 EALASTSEDRPLIVQ 83
>gi|170034571|ref|XP_001845147.1| t-diRNAhydrouridine synthase [Culex quinquefasciatus]
gi|167875928|gb|EDS39311.1| t-diRNAhydrouridine synthase [Culex quinquefasciatus]
Length = 609
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 186/374 (49%), Positives = 259/374 (69%), Gaps = 9/374 (2%)
Query: 120 KKLRQEILMSTPEDRPLIIQRTIFPR-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYT 178
K+ ++ +++T + RP + + + LGSP++++APMVDASEL WRLLSRR+G+ LCY+
Sbjct: 75 KRTAKQPVVATRQQRPKLAGFEFYEKILGSPKYVVAPMVDASELAWRLLSRRHGAQLCYS 134
Query: 179 PMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGC 238
PM + F D K R++ L + PEDRPLIIQFCGND K L EA LA+ HCD IDIN+GC
Sbjct: 135 PMFHSSCFTKDPKYRKDSLQTCPEDRPLIIQFCGNDPKVLLEAGLLAQDHCDAIDINLGC 194
Query: 239 PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAG 298
PQ +AKRGHYGA+LQD+W LL +VS+L Q + VPV+CK+RI++D+ KT+ YA+MLE AG
Sbjct: 195 PQAIAKRGHYGAFLQDEWDLLKKIVSTLHQNLSVPVTCKVRIFEDMAKTIRYAKMLESAG 254
Query: 299 CQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358
CQ+L VHGRT DQ+G TG+A W+++ +++ + IPV++NGNI + DV C+ +TGV G
Sbjct: 255 CQMLVVHGRTRDQKGPLTGVADWKYVKVLKEIMKIPVLSNGNIMSVEDVHRCIEETGVNG 314
Query: 359 VMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENS 418
VMTAEGNL+NP LF G +W +A EYLD+V +YP + Y RGH+F + HHL+ L N
Sbjct: 315 VMTAEGNLFNPFLFEGINPTSWTVALEYLDIVEKYPAPISYIRGHLFKILHHLMNLKSNG 374
Query: 419 DVRLLVGKTNHIKDLRKAVDMLRERFIDYHEGRKLWP--------PPNYPMSSNHHNLSL 470
+R + ++ + D R V L ++ +HEG + W PP +NL+L
Sbjct: 375 PLREQMATSHSVADFRAIVKQLEAKYEPFHEGLQRWTGEETNTEQPPESEPDQPTYNLAL 434
Query: 471 PPWICQPYVRPTPE 484
PPW+CQPY+R PE
Sbjct: 435 PPWLCQPYIRAPPE 448
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 51/64 (79%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LGSP++++APMVDASEL WRLLSRR+G+ LCY+PM + F D K R++ L + PEDRP
Sbjct: 102 LGSPKYVVAPMVDASELAWRLLSRRHGAQLCYSPMFHSSCFTKDPKYRKDSLQTCPEDRP 161
Query: 136 LIIQ 139
LIIQ
Sbjct: 162 LIIQ 165
>gi|158296576|ref|XP_316960.4| AGAP008484-PA [Anopheles gambiae str. PEST]
gi|157014776|gb|EAA12777.4| AGAP008484-PA [Anopheles gambiae str. PEST]
Length = 560
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 191/364 (52%), Positives = 251/364 (68%), Gaps = 26/364 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L SPR+++APMVDASEL WRLLSRR+G+ LCY+PM + F D K R++ L + PEDRP
Sbjct: 38 LRSPRYVVAPMVDASELAWRLLSRRHGAQLCYSPMFHSSCFTKDPKYRKDSLQTCPEDRP 97
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LIIQFCGND K + EAA LA+ HCD IDIN+GCPQ +AKRGHYGA+LQD+W LL +VS+
Sbjct: 98 LIIQFCGNDPKIMLEAALLAQDHCDAIDINLGCPQAIAKRGHYGAFLQDEWELLREIVST 157
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + + +PV+CKIRI++D+ KT+ YARML+ AG Q+L VHGRT DQ+G TGLA W+++
Sbjct: 158 LHRHLAIPVTCKIRIFEDMAKTIRYARMLQDAGAQMLTVHGRTRDQKGPLTGLADWKYVR 217
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
+R+ L+IP+ +NGNI + DVE C+A+TGV GVMTAEGNL+NPALF G AW +A E
Sbjct: 218 VLRQQLSIPIFSNGNIMSVHDVERCIAETGVNGVMTAEGNLHNPALFEGVNPTAWSMAHE 277
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YLDLV QYP + Y RGH+F + HHL+ L N+ +R + ++ + + R V L ++++
Sbjct: 278 YLDLVEQYPAPISYIRGHLFKLFHHLMHLKSNAALREKLAGSHSVAEFRTVVTQLEQKYL 337
Query: 446 DYHEGRKLW-------------------------PPPNYPMSSNHHNLSLPPWICQPYVR 480
YHEG LW P P +P S NL LPPW+CQPY+R
Sbjct: 338 PYHEGTLLWTGEDDSDATHNDDDTTSTATENGQQPSPPHP-SKQDQNLHLPPWLCQPYIR 396
Query: 481 PTPE 484
PE
Sbjct: 397 APPE 400
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 50/64 (78%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
L SPR+++APMVDASEL WRLLSRR+G+ LCY+PM + F D K R++ L + PEDRP
Sbjct: 38 LRSPRYVVAPMVDASELAWRLLSRRHGAQLCYSPMFHSSCFTKDPKYRKDSLQTCPEDRP 97
Query: 136 LIIQ 139
LIIQ
Sbjct: 98 LIIQ 101
>gi|195443038|ref|XP_002069246.1| GK21069 [Drosophila willistoni]
gi|194165331|gb|EDW80232.1| GK21069 [Drosophila willistoni]
Length = 519
Score = 403 bits (1036), Expect = e-109, Method: Compositional matrix adjust.
Identities = 181/340 (53%), Positives = 247/340 (72%), Gaps = 1/340 (0%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LGSPR+++APMVD SEL WR+L RRYG+ LCY+PM A+ F D K R++ L + EDRP
Sbjct: 27 LGSPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFANDVKYRKDALQTCAEDRP 86
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LIIQFCGNDS+ + EAA LA+ HCD IDIN+GCPQ +AKRGHYG++LQD+W LL +VS+
Sbjct: 87 LIIQFCGNDSQQILEAALLAQGHCDAIDINLGCPQAIAKRGHYGSFLQDEWELLEKIVST 146
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + + +PV+CKIRI++D KT+ YA+MLE AGCQLL VHGRT +Q+G TG+A W +I
Sbjct: 147 LHEKLSIPVTCKIRIFEDREKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVADWSYIR 206
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
+VRK + IP+ ANGNI L DV CL TGV GVM+AEGNL+NPA+F G + P W++A E
Sbjct: 207 SVRKEIKIPMFANGNILGLEDVHRCLDTTGVDGVMSAEGNLHNPAIFRGISPPVWQIAKE 266
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL+LV QYP Y RGH+F + HH++ + +N+++R + N ++ + VD ++ ++
Sbjct: 267 YLELVNQYPCPTSYIRGHLFKLFHHIMNINQNAELREQLATGNQMEQFHQVVDKVQSKYE 326
Query: 446 DYHEGRKLWPPPNYPM-SSNHHNLSLPPWICQPYVRPTPE 484
Y +G ++ P S + NL LPPW+CQPY+R +PE
Sbjct: 327 PYQKGELIYTPEETESPSDSGQNLLLPPWLCQPYIRISPE 366
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 49/64 (76%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LGSPR+++APMVD SEL WR+L RRYG+ LCY+PM A+ F D K R++ L + EDRP
Sbjct: 27 LGSPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFANDVKYRKDALQTCAEDRP 86
Query: 136 LIIQ 139
LIIQ
Sbjct: 87 LIIQ 90
>gi|157127436|ref|XP_001654979.1| t-diRNAhydrouridine synthase [Aedes aegypti]
gi|108882414|gb|EAT46639.1| AAEL002182-PA [Aedes aegypti]
Length = 581
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 187/356 (52%), Positives = 252/356 (70%), Gaps = 5/356 (1%)
Query: 134 RPLIIQRTIFPR-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKL 192
RP + + + LGSP++++APMVDASEL WRLLSRR+G+ LCY+PM + F D K
Sbjct: 77 RPKLTGFEFYEKTLGSPKYVVAPMVDASELAWRLLSRRHGAQLCYSPMFHSSCFSKDPKY 136
Query: 193 RQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 252
R++ L + PEDRPLIIQFCGND K L EAA LA+ HCD IDIN+GCPQ +AKRGHYGA+L
Sbjct: 137 RKDSLQTCPEDRPLIIQFCGNDPKVLLEAALLAQDHCDAIDINLGCPQAIAKRGHYGAFL 196
Query: 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR 312
QD+W LL +VS+L + VPV+CKIRI++D+NKT+ YA+MLE AGCQ+L VHGRT DQ+
Sbjct: 197 QDEWDLLKEIVSTLHSKLSVPVTCKIRIFEDMNKTIRYAKMLEAAGCQMLTVHGRTRDQK 256
Query: 313 GMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
G TG+A W+++ +++ L IPV++NGNI + DV C+ +TGV G+MTAEGNL+NP LF
Sbjct: 257 GPLTGIADWKYVKKLKEILKIPVLSNGNIMGVEDVHRCMEETGVNGIMTAEGNLFNPFLF 316
Query: 373 TGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKD 432
G AW +A EYLD+V QYP + Y RGH+F + HHL+ L N+ +R + + + +
Sbjct: 317 EGVNPTAWSVALEYLDIVEQYPAPMSYIRGHLFKILHHLMNLKPNAVLRERMASCHSVSE 376
Query: 433 LRKAVDMLRERFIDYHEGRKLWP--PPNYPMSSNH--HNLSLPPWICQPYVRPTPE 484
R V + ++ HEG + W + P +S +NLSLPPW+CQPY+R PE
Sbjct: 377 FRAIVKEIEAKYAPIHEGLQQWSEEESSIPQASPELTYNLSLPPWLCQPYIRAPPE 432
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 51/64 (79%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LGSP++++APMVDASEL WRLLSRR+G+ LCY+PM + F D K R++ L + PEDRP
Sbjct: 90 LGSPKYVVAPMVDASELAWRLLSRRHGAQLCYSPMFHSSCFSKDPKYRKDSLQTCPEDRP 149
Query: 136 LIIQ 139
LIIQ
Sbjct: 150 LIIQ 153
>gi|193699924|ref|XP_001951016.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Acyrthosiphon
pisum]
Length = 471
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 176/342 (51%), Positives = 246/342 (71%), Gaps = 5/342 (1%)
Query: 139 QRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM 198
+ ++ RLG P+++LAPMV+ SELPWR+LSR++G LC+ PM+ + F+ D+K R+E
Sbjct: 4 KENVWERLGKPKYVLAPMVEQSELPWRMLSRKHGVQLCFAPMLHSQNFVQDRKYRKEFFT 63
Query: 199 STPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL 258
+ PEDRPL++QFCGND K + EA KL E CD ID+N+GCPQ +AKRG YG++LQD+W L
Sbjct: 64 TCPEDRPLVVQFCGNDPKVILEAGKLVEDSCDVIDLNLGCPQAIAKRGFYGSFLQDEWKL 123
Query: 259 LTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL 318
+ ++V +LR ++VPVSCKIRI++D+ KT+ YA+MLE AGCQ+L+VHGRT DQ+G TG+
Sbjct: 124 IFDIVKTLRDNLKVPVSCKIRIFEDLTKTISYAKMLEEAGCQMLSVHGRTRDQKGRLTGI 183
Query: 319 ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRP 378
A W I AV++ +TIPV+ANGNI D+E CL T GVM+AEG+L+NP +F Q+ P
Sbjct: 184 ADWSQIKAVKENVTIPVLANGNILIYQDIERCLKDTLCEGVMSAEGHLHNPYIFDNQSPP 243
Query: 379 AWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVD 438
WE A EYLDL QYP L RGH+F +C+H+ +LPEN +R ++ K + D R A+
Sbjct: 244 VWEPALEYLDLSQQYPCPLSNTRGHLFKLCYHVFSLPENESIRDILAKGQNRNDFRNAIM 303
Query: 439 MLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVR 480
L+ +++ YH G+ W + N +NL+LPPW+CQP VR
Sbjct: 304 QLKVKYLPYHMGQLPWNS-----NQNDYNLTLPPWLCQPMVR 340
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 55/72 (76%)
Query: 68 ARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL 127
++ + W +LG P+++LAPMV+ SELPWR+LSR++G LC+ PM+ + F+ D+K R+E
Sbjct: 3 SKENVWERLGKPKYVLAPMVEQSELPWRMLSRKHGVQLCFAPMLHSQNFVQDRKYRKEFF 62
Query: 128 MSTPEDRPLIIQ 139
+ PEDRPL++Q
Sbjct: 63 TTCPEDRPLVVQ 74
>gi|427799037|gb|JAA64970.1| Putative trna-dihydrouridine synthase, partial [Rhipicephalus
pulchellus]
Length = 476
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 186/340 (54%), Positives = 242/340 (71%), Gaps = 10/340 (2%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L SP+F++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D K R+E L + ED P
Sbjct: 15 LKSPKFVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAAVFLKDPKYRKETLATCDEDTP 74
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LI+QFC ND L EA+++ C +D+N+GCPQ +A+ GHYGA+LQD+W LL+ +V+
Sbjct: 75 LIVQFCANDPDVLFEASRMVVGQCCAVDLNLGCPQAIARAGHYGAFLQDEWDLLSRMVNK 134
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L +++P++CK+R++ +V+KTVEYA+MLE AGCQ+L VHGRT DQ+G TGLA+WEHI
Sbjct: 135 LHTELEIPITCKVRVFPEVDKTVEYAKMLEAAGCQVLTVHGRTRDQKGPFTGLANWEHIR 194
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
AV++ + IPVIANGNIQ L D CL +TGV VM+AEGNL+NP LFTG RP WE A E
Sbjct: 195 AVKQNVKIPVIANGNIQYLQDALRCLEETGVDAVMSAEGNLHNPYLFTGTQRPVWEAALE 254
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL+LV QYP Y RGH F + HH +T+PEN D+R + K + ++ + LR RF
Sbjct: 255 YLELVRQYPCPTSYIRGHCFKLLHHCMTMPENVDLREKLAKASMVETFEEVAMALRNRFQ 314
Query: 446 DYHEGRKLW-PPPNYPMSSNHHNLSLPPWICQPYVRPTPE 484
D K W P PN P + +L PPWICQPYVRP+PE
Sbjct: 315 D-----KTWDPDPNSPQA----DLPFPPWICQPYVRPSPE 345
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
Query: 73 WTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP 131
WT+ L SP+F++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D K R+E L +
Sbjct: 11 WTKVLKSPKFVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAAVFLKDPKYRKETLATCD 70
Query: 132 EDRPLIIQ 139
ED PLI+Q
Sbjct: 71 EDTPLIVQ 78
>gi|198476736|ref|XP_002132430.1| GA25459 [Drosophila pseudoobscura pseudoobscura]
gi|198137829|gb|EDY69832.1| GA25459 [Drosophila pseudoobscura pseudoobscura]
Length = 507
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 178/339 (52%), Positives = 243/339 (71%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LGSPR+++APMVD SEL WR+L RRYG+ LCY+PM A+ F D K R++ L + PEDRP
Sbjct: 24 LGSPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFAHDPKYRKDALQTCPEDRP 83
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LIIQFCGND++ + +AA LA+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT++V +
Sbjct: 84 LIIQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTDIVRT 143
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + + VPV+CKIRI++D KT+ YA+MLE AGCQLL VHGRT +Q+G TG+A W +I
Sbjct: 144 LHEKLSVPVTCKIRIFEDREKTLRYAKMLEAAGCQLLTVHGRTREQKGPLTGVADWSYIQ 203
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
VRK L IP+ ANGNI L DV CL +TGV GVMTAEGNL+NPA+F G P W++A E
Sbjct: 204 EVRKHLKIPMFANGNILGLEDVHRCLDETGVDGVMTAEGNLHNPAIFQGLAPPVWQVAKE 263
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL+ V YP Y RGH+F + HH++ + +NS++R + +N + + VD ++ ++
Sbjct: 264 YLEFVDLYPCPSSYIRGHLFKLFHHIMNIRQNSELRDTLATSNQLVQFQAVVDKVQAKYE 323
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPE 484
YH+ + P + + L L PW+CQPY+R +PE
Sbjct: 324 PYHKKEVEYVPEEMDAAISTDKLELSPWLCQPYIRASPE 362
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 50/64 (78%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LGSPR+++APMVD SEL WR+L RRYG+ LCY+PM A+ F D K R++ L + PEDRP
Sbjct: 24 LGSPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFAHDPKYRKDALQTCPEDRP 83
Query: 136 LIIQ 139
LIIQ
Sbjct: 84 LIIQ 87
>gi|195155541|ref|XP_002018662.1| GL25830 [Drosophila persimilis]
gi|194114815|gb|EDW36858.1| GL25830 [Drosophila persimilis]
Length = 507
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 177/339 (52%), Positives = 243/339 (71%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LGSPR+++APMVD SEL WR+L RRYG+ LCY+PM A+ F D K R++ L + PEDRP
Sbjct: 24 LGSPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFAHDPKYRKDALQTCPEDRP 83
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LIIQFCGND++ + +AA LA+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT++V +
Sbjct: 84 LIIQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTDIVRT 143
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + + VPV+CKIRI++D KT+ YA+MLE AGCQLL VHGRT +Q+G TG+A W +I
Sbjct: 144 LHEKLSVPVTCKIRIFEDREKTLRYAKMLEAAGCQLLTVHGRTREQKGPLTGVADWSYIQ 203
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
VR+ L IP+ ANGNI L DV CL +TGV GVMTAEGNL+NPA+F G P W++A E
Sbjct: 204 EVRQHLKIPMFANGNILGLEDVHRCLDETGVDGVMTAEGNLHNPAIFQGLAPPVWQVAKE 263
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL+ V YP Y RGH+F + HH++ + +NS++R + +N + + VD ++ ++
Sbjct: 264 YLEFVDLYPCPSSYIRGHLFKLFHHIMNIRQNSELRDTLATSNQLVQFQAVVDKVQAKYE 323
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPE 484
YH+ + P + + L L PW+CQPY+R +PE
Sbjct: 324 PYHKKEVEYLPEEMDAAISTDKLELSPWLCQPYIRASPE 362
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 50/64 (78%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LGSPR+++APMVD SEL WR+L RRYG+ LCY+PM A+ F D K R++ L + PEDRP
Sbjct: 24 LGSPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFAHDPKYRKDALQTCPEDRP 83
Query: 136 LIIQ 139
LIIQ
Sbjct: 84 LIIQ 87
>gi|346464753|gb|AEO32221.1| hypothetical protein [Amblyomma maculatum]
Length = 446
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 183/339 (53%), Positives = 240/339 (70%), Gaps = 8/339 (2%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L SP++++APMVD SEL WRLLSRR+G+HLCYTPM+ A F+ D K RQE L S ED P
Sbjct: 15 LKSPKYVVAPMVDQSELAWRLLSRRHGAHLCYTPMLHAAVFLKDPKYRQESLASCDEDTP 74
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LI+QFC ND L EA+++ HC +D+N+GCPQ +A+ GHYGA+LQD+W LL+ +V+
Sbjct: 75 LIVQFCANDPDVLFEASRMVVGHCCAVDLNLGCPQAIARAGHYGAFLQDEWDLLSKMVNK 134
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L +++P++CK+R++ ++ KTV YA+MLE AGCQ+L VHGRT DQ+G +TGLASWEHI
Sbjct: 135 LHTELEIPITCKVRVFPEIEKTVRYAQMLEAAGCQVLTVHGRTRDQKGPSTGLASWEHIK 194
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
AV++ + IPVIANGNIQ L D CL +TGV VM+AEGNL+NP LFTG RP WE A E
Sbjct: 195 AVKQNVKIPVIANGNIQYLHDAVRCLEETGVDAVMSAEGNLHNPYLFTGHQRPVWEAALE 254
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL LV QYP Y RGH F + HH +T+PEN D+R + K + ++ + L+ER
Sbjct: 255 YLQLVRQYPCSTSYIRGHCFKLLHHCMTMPENVDLRDKLAKASTVETFEEVAIALQER-- 312
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPE 484
H+ + P P P + +L PPWICQPYVRP P+
Sbjct: 313 --HQDQTWDPDPGSPQA----DLPFPPWICQPYVRPGPK 345
Score = 91.7 bits (226), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Query: 73 WTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP 131
WT+ L SP++++APMVD SEL WRLLSRR+G+HLCYTPM+ A F+ D K RQE L S
Sbjct: 11 WTKVLKSPKYVVAPMVDQSELAWRLLSRRHGAHLCYTPMLHAAVFLKDPKYRQESLASCD 70
Query: 132 EDRPLIIQ 139
ED PLI+Q
Sbjct: 71 EDTPLIVQ 78
>gi|195470200|ref|XP_002087396.1| GE16327 [Drosophila yakuba]
gi|194173497|gb|EDW87108.1| GE16327 [Drosophila yakuba]
Length = 505
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 178/339 (52%), Positives = 248/339 (73%), Gaps = 1/339 (0%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LGSPR+++APMVD SEL WR+L RRYG+ LCY+PM A+ F D K R++ L + PEDRP
Sbjct: 25 LGSPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKYRKDALQTCPEDRP 84
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LIIQFCGND++ + +AA LA+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT +VS+
Sbjct: 85 LIIQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVST 144
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + +PV+CKIRI++D+ KT+ YA+MLE AGCQLL VHGRT +Q+G TG+A W +I
Sbjct: 145 LHAQLAIPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVADWNYIK 204
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
+VR+ + IP++ANGNI L DV CLA+TGV GVM+AEGNL+NPA+F G + P W++A E
Sbjct: 205 SVRQHVKIPMLANGNILGLEDVHRCLAETGVDGVMSAEGNLHNPAIFQGVSPPVWQMAHE 264
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL+LV YP + RGH+F + HH++ + +NS++R + N + + V +RE++
Sbjct: 265 YLELVQLYPCPSSFIRGHLFKLFHHIMNIRQNSELRQYLATANQLVQFQNVVQQVREKYE 324
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPE 484
+H+G + P S +L L PW+CQPY+R +PE
Sbjct: 325 PFHKGHVPYEPEQVAAGSE-EDLPLSPWLCQPYIRASPE 362
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 50/64 (78%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LGSPR+++APMVD SEL WR+L RRYG+ LCY+PM A+ F D K R++ L + PEDRP
Sbjct: 25 LGSPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKYRKDALQTCPEDRP 84
Query: 136 LIIQ 139
LIIQ
Sbjct: 85 LIIQ 88
>gi|321476981|gb|EFX87940.1| hypothetical protein DAPPUDRAFT_305459 [Daphnia pulex]
Length = 484
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 183/341 (53%), Positives = 245/341 (71%), Gaps = 5/341 (1%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L SP++ILAPMVDASELPWRLLSR+YG+ L YTPM++A FI + + R+E L S EDRP
Sbjct: 15 LNSPKYILAPMVDASELPWRLLSRKYGTQLAYTPMMNAGIFIREPRYRREHLESCTEDRP 74
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LI QFC ND+ +AAK+AE HCD ID+N+GCPQ +AK+GHYGA+LQD+W L++ +V
Sbjct: 75 LIAQFCANDTDIFLKAAKMAEQHCDAIDLNLGCPQSIAKKGHYGAFLQDEWDLISKMVKL 134
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+ + + +P++CK+R++ D+NK++ YA+MLE +GC L VHGRT +Q+G TGLASW+HI
Sbjct: 135 IHRELSIPITCKVRVFPDINKSIAYAKMLEESGCYALTVHGRTREQKGPLTGLASWKHIQ 194
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
AV+ A+ IPVIANGNIQ +DVE CL TG VM AEGNL NPALF W++ E
Sbjct: 195 AVKAAVNIPVIANGNIQYWSDVERCLESTGADAVMVAEGNLTNPALFANLQPLVWDMGKE 254
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YLDLV ++P + YARGH+F + +H LTL E +R + + +++D + V L + F
Sbjct: 255 YLDLVERFPCPMSYARGHLFKIFNHCLTLEECFPLREALVQGMNLEDFKTVVADLEKHFT 314
Query: 446 DYHEGRKLW-PPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
YH+G K W PP ++P S L LPPW CQPYVRP+PE+
Sbjct: 315 PYHQGVKAWTPPTDHPTS----RLPLPPWHCQPYVRPSPEE 351
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 54/70 (77%), Gaps = 1/70 (1%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+ W Q L SP++ILAPMVDASELPWRLLSR+YG+ L YTPM++A FI + + R+E L S
Sbjct: 9 EFWRQTLNSPKYILAPMVDASELPWRLLSRKYGTQLAYTPMMNAGIFIREPRYRREHLES 68
Query: 130 TPEDRPLIIQ 139
EDRPLI Q
Sbjct: 69 CTEDRPLIAQ 78
>gi|194765691|ref|XP_001964960.1| GF22874 [Drosophila ananassae]
gi|190617570|gb|EDV33094.1| GF22874 [Drosophila ananassae]
Length = 509
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 173/339 (51%), Positives = 237/339 (69%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LGSPR+++APMVD SEL WR+L RRYG+HLCYTPM A+ F D K R++ L + DRP
Sbjct: 25 LGSPRYVVAPMVDQSELAWRMLCRRYGAHLCYTPMYHANLFATDPKYRKDALQTCAGDRP 84
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
L+IQFCGND++ + +AA A+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT +VS+
Sbjct: 85 LVIQFCGNDAQQILDAALAAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVST 144
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + + +PV+CKIRI++D KT+ YA+MLE AGCQLL VHGRT +Q+G TG+A W +I
Sbjct: 145 LHKKLSIPVTCKIRIFEDRAKTIRYAQMLEAAGCQLLTVHGRTREQKGPLTGVADWSYIK 204
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
VR+ + IP+ ANGNI L DV CL +TGV GVM+AEGNL+NPA+F G P W +A E
Sbjct: 205 EVRQHIKIPMFANGNILGLEDVHRCLEETGVDGVMSAEGNLHNPAIFQGLAPPVWHMAKE 264
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL+ V YP Y RGH+F + HH++ + +NS++R + N + V ++ ++
Sbjct: 265 YLEFVDLYPCPSSYIRGHLFKLFHHIMNIRQNSELRETLATANQLVQFNDVVQRVKAKYE 324
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPE 484
YH+G + P + L L PW+CQPY+R +PE
Sbjct: 325 PYHKGELPYEPEEMDATVGAEKLPLAPWLCQPYIRASPE 363
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 50/66 (75%)
Query: 74 TQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPED 133
+ LGSPR+++APMVD SEL WR+L RRYG+HLCYTPM A+ F D K R++ L + D
Sbjct: 23 STLGSPRYVVAPMVDQSELAWRMLCRRYGAHLCYTPMYHANLFATDPKYRKDALQTCAGD 82
Query: 134 RPLIIQ 139
RPL+IQ
Sbjct: 83 RPLVIQ 88
>gi|194853320|ref|XP_001968141.1| GG24669 [Drosophila erecta]
gi|190660008|gb|EDV57200.1| GG24669 [Drosophila erecta]
Length = 505
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 176/339 (51%), Positives = 248/339 (73%), Gaps = 1/339 (0%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LGSPR+++APMVD SEL WR+L RRYG+ LCY+PM A+ F D K R++ L + PEDRP
Sbjct: 25 LGSPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKYRKDALQTCPEDRP 84
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LIIQFCGND++ + +AA LA+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT +VS+
Sbjct: 85 LIIQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVST 144
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + +PV+CKIRI++D+ KT+ YA+MLE AGCQLL VHGRT +Q+G TG+A+W +I
Sbjct: 145 LHAKLAIPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVANWNYIK 204
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
+VR+ + IP++ANGNI L DV CLA+TGV GVM+AEGNL+NPA+F G + P W++A E
Sbjct: 205 SVRQHIKIPMLANGNILGLEDVHRCLAETGVDGVMSAEGNLHNPAIFRGISPPVWQMAHE 264
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL+LV +P + RGH+F + HH++ + +NS++R + N + + V +R ++
Sbjct: 265 YLELVQLHPCPSSFIRGHLFKLFHHIMNIRQNSELRQYLATANQLVQFQTVVQQVRAKYE 324
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPE 484
+H+G + P S +L L PW+CQPY+R +PE
Sbjct: 325 PFHKGEVPYEPEQMAAGSE-EDLPLSPWLCQPYIRASPE 362
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 51/66 (77%)
Query: 74 TQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPED 133
+ LGSPR+++APMVD SEL WR+L RRYG+ LCY+PM A+ F D K R++ L + PED
Sbjct: 23 SSLGSPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKYRKDALQTCPED 82
Query: 134 RPLIIQ 139
RPLIIQ
Sbjct: 83 RPLIIQ 88
>gi|19920448|ref|NP_608507.1| CG3645, isoform A [Drosophila melanogaster]
gi|24580595|ref|NP_722619.1| CG3645, isoform B [Drosophila melanogaster]
gi|442624911|ref|NP_001259809.1| CG3645, isoform C [Drosophila melanogaster]
gi|15292203|gb|AAK93370.1| LD42056p [Drosophila melanogaster]
gi|22945600|gb|AAF51525.2| CG3645, isoform A [Drosophila melanogaster]
gi|22945601|gb|AAN10512.1| CG3645, isoform B [Drosophila melanogaster]
gi|220955978|gb|ACL90532.1| CG3645-PA [synthetic construct]
gi|295293325|gb|ADF87928.1| MIP22167p [Drosophila melanogaster]
gi|440213055|gb|AGB92346.1| CG3645, isoform C [Drosophila melanogaster]
Length = 505
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 176/339 (51%), Positives = 246/339 (72%), Gaps = 1/339 (0%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LGSPR+++APMVD SEL WR+L RRYG+ LCY+PM A+ F D K R++ L + PEDRP
Sbjct: 25 LGSPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKYRKDALQTCPEDRP 84
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LIIQFCGND++ + +AA LA+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT +VS+
Sbjct: 85 LIIQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVST 144
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + VPV+CKIRI++D+ KT+ YA+MLE AGCQLL VHGRT +Q+G TG+A+W +I
Sbjct: 145 LHAKLAVPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVANWNYIK 204
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
VR+ + IP++ANGNI L DV CL +TGV GVM+AEGNL+NPA+F G + P W++A E
Sbjct: 205 NVRQHIKIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNPAIFKGVSPPVWQMAHE 264
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL+LV +P + RGH+F + HH++ + +NS++R + N + + V +R ++
Sbjct: 265 YLELVQLHPCPSSFIRGHLFKLFHHIMNIRQNSELRQYLATANQLVQFQAVVQQVRAKYE 324
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPE 484
+H+G + P S +L L PW+CQPY+R +PE
Sbjct: 325 PFHKGEVPYEPEQMAAGSE-EDLPLSPWLCQPYIRASPE 362
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 51/66 (77%)
Query: 74 TQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPED 133
+ LGSPR+++APMVD SEL WR+L RRYG+ LCY+PM A+ F D K R++ L + PED
Sbjct: 23 SSLGSPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKYRKDALQTCPED 82
Query: 134 RPLIIQ 139
RPLIIQ
Sbjct: 83 RPLIIQ 88
>gi|195575487|ref|XP_002077609.1| GD22975 [Drosophila simulans]
gi|194189618|gb|EDX03194.1| GD22975 [Drosophila simulans]
Length = 505
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 175/339 (51%), Positives = 244/339 (71%), Gaps = 1/339 (0%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LGSPR+++APMVD SEL WR+L RRYG+ LCY+PM A+ F D K R++ L + PEDRP
Sbjct: 25 LGSPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKYRKDALQTCPEDRP 84
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LIIQFCGND++ + +AA LA+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT +VS+
Sbjct: 85 LIIQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVST 144
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + VPV+CKIRI++D+ KT+ YA+MLE AGCQLL VHGRT +Q+G TG+A W +I
Sbjct: 145 LHAKLAVPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVADWNYIK 204
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
VR+ + IP++ANGNI L DV CL +TGV GVM+AEGNL+NPA+F G + P W++A E
Sbjct: 205 NVRQHIKIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNPAIFKGVSPPVWQMAHE 264
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL+ V +P + RGH+F + HH++ + +NS++R + N + + V +R ++
Sbjct: 265 YLEFVQLHPCPSSFIRGHLFKLFHHIMNIRQNSELRQYLATANQLVQFQAVVQQVRAKYE 324
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPE 484
+H+G + P S +L L PW+CQPY+R +PE
Sbjct: 325 PFHKGEVPYEPEQMAAGSE-EDLPLSPWLCQPYIRASPE 362
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 51/66 (77%)
Query: 74 TQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPED 133
+ LGSPR+++APMVD SEL WR+L RRYG+ LCY+PM A+ F D K R++ L + PED
Sbjct: 23 SSLGSPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKYRKDALQTCPED 82
Query: 134 RPLIIQ 139
RPLIIQ
Sbjct: 83 RPLIIQ 88
>gi|195350041|ref|XP_002041550.1| GM16688 [Drosophila sechellia]
gi|194123323|gb|EDW45366.1| GM16688 [Drosophila sechellia]
Length = 503
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 175/339 (51%), Positives = 244/339 (71%), Gaps = 1/339 (0%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LGSPR+++APMVD SEL WR+L RRYG+ LCY+PM A+ F D K R++ L + PEDRP
Sbjct: 25 LGSPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKYRKDALQTCPEDRP 84
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LIIQFCGND++ + +AA LA+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT +VS+
Sbjct: 85 LIIQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVST 144
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + VPV+CKIRI++D+ KT+ YA+MLE AGCQLL VHGRT +Q+G TG+A W +I
Sbjct: 145 LHAKLAVPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVADWNYIK 204
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
VR+ + IP++ANGNI L DV CL +TGV GVM+AEGNL+NPA+F G + P W++A E
Sbjct: 205 NVRQHIKIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNPAIFKGVSPPVWQMAHE 264
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL+ V +P + RGH+F + HH++ + +NS++R + N + + V +R ++
Sbjct: 265 YLEFVQLHPCPSSFIRGHLFKLFHHIMNIRQNSELRQYLATANQLVQFQAVVQQVRAKYE 324
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPE 484
+H+G + P S +L L PW+CQPY+R +PE
Sbjct: 325 PFHKGEVPYEPEQMAAGSE-EDLPLSPWLCQPYIRASPE 362
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 51/66 (77%)
Query: 74 TQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPED 133
+ LGSPR+++APMVD SEL WR+L RRYG+ LCY+PM A+ F D K R++ L + PED
Sbjct: 23 SSLGSPRYVVAPMVDQSELAWRMLCRRYGAELCYSPMYHANLFATDPKYRKDALQTCPED 82
Query: 134 RPLIIQ 139
RPLIIQ
Sbjct: 83 RPLIIQ 88
>gi|195114456|ref|XP_002001783.1| GI15082 [Drosophila mojavensis]
gi|193912358|gb|EDW11225.1| GI15082 [Drosophila mojavensis]
Length = 510
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 174/343 (50%), Positives = 239/343 (69%), Gaps = 4/343 (1%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LGSPR+++APMVD SEL WR+L RRYG+ LCY+PM A+ F D K R++ L + PEDRP
Sbjct: 20 LGSPRYVVAPMVDQSELAWRMLCRRYGAQLCYSPMYHANLFATDLKYRKDALQTCPEDRP 79
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LIIQFCGND + + EAA A+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT++V +
Sbjct: 80 LIIQFCGNDPQQILEAALAAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTDIVRT 139
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + + VPV+CKIR ++D KT++YA+MLE AGCQLL +HGRT +Q+G TG+A W +I
Sbjct: 140 LHEKLSVPVTCKIRRFEDREKTIQYAKMLEAAGCQLLTIHGRTREQKGPLTGIADWSYIK 199
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
VR+ + IP+ ANGNI L DV CL +TGV GVM+AEGNL+NPA+F G P W++A E
Sbjct: 200 DVREHIKIPMFANGNILGLDDVHRCLDETGVDGVMSAEGNLHNPAIFQGIAPPVWQMAKE 259
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL+ V QYP Y RGH+F + HH++ + NS +R + N + V ++E++
Sbjct: 260 YLEFVDQYPCPTSYIRGHLFKLFHHIMNIRSNSQLREQLATGNQLTQFHAVVAKVQEKYE 319
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLS----LPPWICQPYVRPTPE 484
YH G + P ++ + + L PW+CQPY+R +PE
Sbjct: 320 PYHTGMAKYEPEEMELNMSAGGIEELPMLQPWLCQPYIRASPE 362
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 50/64 (78%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LGSPR+++APMVD SEL WR+L RRYG+ LCY+PM A+ F D K R++ L + PEDRP
Sbjct: 20 LGSPRYVVAPMVDQSELAWRMLCRRYGAQLCYSPMYHANLFATDLKYRKDALQTCPEDRP 79
Query: 136 LIIQ 139
LIIQ
Sbjct: 80 LIIQ 83
>gi|194765697|ref|XP_001964963.1| GF22885 [Drosophila ananassae]
gi|190617573|gb|EDV33097.1| GF22885 [Drosophila ananassae]
Length = 513
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 171/339 (50%), Positives = 236/339 (69%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LGSPR+++APMVD SEL WR+L RRYG+HLCYTPM A+ F D K R++ L + DRP
Sbjct: 25 LGSPRYVVAPMVDQSELAWRMLCRRYGAHLCYTPMYHANLFATDPKYRKDALQTCAGDRP 84
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
L+IQFCGND++ + +AA A+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT + S+
Sbjct: 85 LVIQFCGNDAQQILDAALAAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIEST 144
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + + +PV+CKIRI++D KT+ YA+MLE AGCQLL VHGRT +Q+G TG+A W +I
Sbjct: 145 LHKKLSIPVTCKIRIFEDRAKTIRYAQMLEAAGCQLLTVHGRTREQKGPLTGVADWSYIK 204
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
VR+ + IP+ ANGNI L DV CL +TGV GVM+AEGNL+NPA+F G P W +A E
Sbjct: 205 EVRQHIKIPMFANGNILGLEDVHRCLEETGVDGVMSAEGNLHNPAIFQGLAPPVWHMAKE 264
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL+ V YP Y RGH+F + HH++ + +NS+++ + N + V ++ ++
Sbjct: 265 YLEFVDLYPCPSSYIRGHLFKLFHHIMNIRQNSELKETLATANQLVQFNDVVQRVKAKYE 324
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPE 484
YH+G + P + L L PW+CQPY+R +PE
Sbjct: 325 PYHKGELPYEPEEMDATVGAEKLPLDPWLCQPYIRASPE 363
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 50/66 (75%)
Query: 74 TQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPED 133
+ LGSPR+++APMVD SEL WR+L RRYG+HLCYTPM A+ F D K R++ L + D
Sbjct: 23 STLGSPRYVVAPMVDQSELAWRMLCRRYGAHLCYTPMYHANLFATDPKYRKDALQTCAGD 82
Query: 134 RPLIIQ 139
RPL+IQ
Sbjct: 83 RPLVIQ 88
>gi|357610726|gb|EHJ67117.1| hypothetical protein KGM_22527 [Danaus plexippus]
Length = 448
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 173/330 (52%), Positives = 236/330 (71%), Gaps = 1/330 (0%)
Query: 156 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDS 215
MVDASEL WRLLSRR+G+ LCYTPM+ + FI D K R+E + EDRPL +QFCGN+
Sbjct: 1 MVDASELAWRLLSRRHGATLCYTPMLHSTVFIKDPKYRKENFTTCTEDRPLFVQFCGNNP 60
Query: 216 KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVS 275
+ + AAKL E CD IDIN+GCPQ +AKRG YG++LQ++W LL ++VS++ + V VP++
Sbjct: 61 ETMAAAAKLVESDCDAIDINLGCPQSIAKRGRYGSFLQEEWQLLRDIVSTMSKTVSVPIT 120
Query: 276 CKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPV 335
CK+R+++ + K+V+YA ML+ AGC+LL VHGRT +Q+G TG+ASWEHI A+R A++IP+
Sbjct: 121 CKVRVFESIEKSVQYALMLQEAGCKLLTVHGRTREQKGPLTGIASWEHIKAIRDAISIPM 180
Query: 336 IANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPV 395
ANGNIQCL DVE CL T V GVM+AEGNL NPA+F G +WE+A EYLDLV YP
Sbjct: 181 FANGNIQCLQDVERCLQYTKVDGVMSAEGNLTNPAIFEGINSVSWEIALEYLDLVETYPC 240
Query: 396 RLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFIDYHEGRKLWP 455
Y RGH+F + H + T N++ R L+ + D ++ ++ +++ YHEGR L
Sbjct: 241 PTSYIRGHLFKIFHKVFTFDSNNEERQLLATAQCLDDFKQVCIKIKNKYLPYHEGR-LQF 299
Query: 456 PPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
N ++ N +L LPPWICQPYVR +P++
Sbjct: 300 DDNEGITRNQKSLILPPWICQPYVRMSPDE 329
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 40/54 (74%)
Query: 86 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
MVDASEL WRLLSRR+G+ LCYTPM+ + FI D K R+E + EDRPL +Q
Sbjct: 1 MVDASELAWRLLSRRHGATLCYTPMLHSTVFIKDPKYRKENFTTCTEDRPLFVQ 54
>gi|195035293|ref|XP_001989112.1| GH10224 [Drosophila grimshawi]
gi|193905112|gb|EDW03979.1| GH10224 [Drosophila grimshawi]
Length = 503
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 174/339 (51%), Positives = 241/339 (71%), Gaps = 1/339 (0%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LGSPR+++APMVD SEL WR+L RRYG+ LCY+PM A+ F D K R++ L + PEDRP
Sbjct: 23 LGSPRYVVAPMVDQSELAWRMLCRRYGAQLCYSPMYHANLFATDPKYRKDALQTCPEDRP 82
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LIIQFCGND + + EAA A+ +CD +DIN+GCPQ +AKRGHYGA+LQD+W LLT +V +
Sbjct: 83 LIIQFCGNDPQQILEAALAAQNYCDAVDINLGCPQAIAKRGHYGAFLQDEWELLTQIVRT 142
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + + +PV+CKIR ++D KT+EYA+MLE AGCQLL VHGRT +Q+G TG+A W +I
Sbjct: 143 LHEKLSIPVTCKIRRFEDRAKTIEYAKMLEAAGCQLLTVHGRTREQKGPLTGIADWSYIK 202
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
VR+ + IP++ANGNI + DV CL +TGV GVMTAEGNL+NPALF G + P W++A+E
Sbjct: 203 DVREHIKIPMLANGNILGVEDVHRCLTETGVDGVMTAEGNLHNPALFEGISPPVWQMANE 262
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL+ V YP Y RGH+F + HH++ + ENS++R + N ++ V ++ ++
Sbjct: 263 YLEFVDLYPCPTSYIRGHLFKLFHHIMNIRENSEMREQLATANQLQQFHSVVRRVQAKYE 322
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPE 484
Y +G + P ++ + L PW+CQPY+R +PE
Sbjct: 323 PYQQGELDYEPEEMELNVCELPM-LQPWLCQPYIRASPE 360
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 50/64 (78%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LGSPR+++APMVD SEL WR+L RRYG+ LCY+PM A+ F D K R++ L + PEDRP
Sbjct: 23 LGSPRYVVAPMVDQSELAWRMLCRRYGAQLCYSPMYHANLFATDPKYRKDALQTCPEDRP 82
Query: 136 LIIQ 139
LIIQ
Sbjct: 83 LIIQ 86
>gi|195386396|ref|XP_002051890.1| GJ17247 [Drosophila virilis]
gi|194148347|gb|EDW64045.1| GJ17247 [Drosophila virilis]
Length = 504
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 176/343 (51%), Positives = 235/343 (68%), Gaps = 4/343 (1%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG+PR+I+APMVD SEL WR+L RRYG+ LCY+PM A+ F D K R++ L + P DRP
Sbjct: 22 LGAPRYIVAPMVDQSELAWRMLCRRYGAQLCYSPMYHANLFATDLKYRKDALQTCPADRP 81
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LIIQFCGND + + EAA A+ HCD +DIN+GCPQ +AKRGHYGA+LQD+W LLT +V +
Sbjct: 82 LIIQFCGNDPQQMLEAALAAQDHCDAVDINLGCPQAIAKRGHYGAFLQDEWQLLTQIVRT 141
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + + VPV+CKIRI++D KT+ YA+MLE AGCQLL VHGRT +Q+G TG+A W +I
Sbjct: 142 LHEQLSVPVTCKIRIFEDREKTINYAKMLEAAGCQLLTVHGRTREQKGPLTGIADWSYIK 201
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
VR+ + IP+ ANGNI L DV CL TGV GVMTAEGNL+NPA+F G + P W++A E
Sbjct: 202 DVRQHIKIPMFANGNILGLEDVHRCLEATGVDGVMTAEGNLHNPAIFQGISPPVWQMAHE 261
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL+ V YP Y RGH+F + HH++ + N+ +R + N + V ++E++
Sbjct: 262 YLEFVDLYPCPTSYIRGHLFKLFHHIMNIRSNAQLREQLATANQLTQFHGVVAKVQEKYA 321
Query: 446 DYHEGRKLWPPP----NYPMSSNHHNLSLPPWICQPYVRPTPE 484
YH G + P N ++ L PW+CQPY+R +PE
Sbjct: 322 PYHTGAAAYAPEEMELNVSAAAAEELPMLQPWLCQPYIRASPE 364
Score = 89.0 bits (219), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 49/64 (76%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LG+PR+I+APMVD SEL WR+L RRYG+ LCY+PM A+ F D K R++ L + P DRP
Sbjct: 22 LGAPRYIVAPMVDQSELAWRMLCRRYGAQLCYSPMYHANLFATDLKYRKDALQTCPADRP 81
Query: 136 LIIQ 139
LIIQ
Sbjct: 82 LIIQ 85
>gi|198436587|ref|XP_002123151.1| PREDICTED: similar to PP3111 protein [Ciona intestinalis]
Length = 474
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/356 (51%), Positives = 243/356 (68%), Gaps = 9/356 (2%)
Query: 132 EDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK 191
E++ + + +LG P ++APMVD SEL WR+LSR+YG+ LCYTPM+ A F+ D +
Sbjct: 2 ENKEKLEGYKFWEKLGRPTKLVAPMVDQSELAWRMLSRKYGAELCYTPMLHASVFLRDPQ 61
Query: 192 LRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAY 251
R + L S PEDRPLI+QFC ND LT++A LA+ HCD +DIN+GCPQ +AKRG+YGA+
Sbjct: 62 YRIDGLASCPEDRPLIVQFCANDPDILTKSALLAQDHCDAVDINLGCPQTIAKRGNYGAF 121
Query: 252 LQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQ 311
L ++W L+T L+ + + + VPV+CKIRI+ DV KTV+YA+M+ERAGCQLL VHGRT +
Sbjct: 122 LGENWELVTKLIKACHEKLSVPVTCKIRIFTDVEKTVQYAKMIERAGCQLLTVHGRTKEM 181
Query: 312 RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371
+G TGLASWEHI AV+ A+ IPV ANGNIQ ADV+ C+ QTGV GVM AEGNL++P L
Sbjct: 182 KGPMTGLASWEHIKAVKDAVKIPVFANGNIQYKADVDRCINQTGVDGVMIAEGNLHDPCL 241
Query: 372 FTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIK 431
F G+ WE+A EYL +YP YARGHVF +CHH L ++ R L+ + I+
Sbjct: 242 FVGKKTIIWEIALEYLQCAVKYPCPASYARGHVFKICHH--GLQRHTRARDLLASSKDIQ 299
Query: 432 DLRKAVDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQQE 487
D++ AV++LR+ K S + L +P W CQPYVRP P+ +E
Sbjct: 300 DMKTAVEVLRDICTQSCGVGK-------ENSVSDDALPMPHWFCQPYVRPAPKPKE 348
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 50/67 (74%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
W +LG P ++APMVD SEL WR+LSR+YG+ LCYTPM+ A F+ D + R + L S PE
Sbjct: 13 WEKLGRPTKLVAPMVDQSELAWRMLSRKYGAELCYTPMLHASVFLRDPQYRIDGLASCPE 72
Query: 133 DRPLIIQ 139
DRPLI+Q
Sbjct: 73 DRPLIVQ 79
>gi|443732865|gb|ELU17429.1| hypothetical protein CAPTEDRAFT_178407 [Capitella teleta]
Length = 463
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/342 (53%), Positives = 233/342 (68%), Gaps = 8/342 (2%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L R ++APMVD SEL WR+LSRR+G+ LCYTPM A F+ D R+E L + EDRP
Sbjct: 25 LKKSRLVVAPMVDQSELAWRILSRRHGADLCYTPMFHAPVFVRDASYRREALATCEEDRP 84
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LI+QFC ND + L +AAK AEPHCD ID+N+GCPQM+AKRGHYGAYLQ++W LL +VS
Sbjct: 85 LIVQFCANDPEILLKAAKYAEPHCDAIDLNLGCPQMIAKRGHYGAYLQEEWDLLERMVSL 144
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+ ++VP++CKIR++ DV+KTV+YA+MLE+AGC+LL VHGRT +Q+G TG+ASW HI
Sbjct: 145 CAKELKVPITCKIRVFDDVDKTVQYAQMLEKAGCKLLTVHGRTREQKGPRTGIASWSHIK 204
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
AVR + IP+ ANGNIQ L DV+ C+ TG GVM+AEGNLYNPAL+ G WE+A E
Sbjct: 205 AVRDNIKIPMFANGNIQYLPDVKRCMEATGAQGVMSAEGNLYNPALYEGINPIVWEIADE 264
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL LV QYP L Y RGH+F +CHH L + ++ +R G + LR + L E
Sbjct: 265 YLQLVEQYPCPLSYIRGHIFKICHHALLV--HTALRERFGNCKTVAGLRDLLSQLHEASK 322
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQQE 487
E P S L LP W CQPYVRP P++++
Sbjct: 323 ADMEAHSKDP------SEFTKELPLPYWQCQPYVRPNPDREK 358
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 73 WTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP 131
W Q L R ++APMVD SEL WR+LSRR+G+ LCYTPM A F+ D R+E L +
Sbjct: 21 WRQTLKKSRLVVAPMVDQSELAWRILSRRHGADLCYTPMFHAPVFVRDASYRREALATCE 80
Query: 132 EDRPLIIQ 139
EDRPLI+Q
Sbjct: 81 EDRPLIVQ 88
>gi|405972534|gb|EKC37298.1| tRNA-dihydrouridine synthase 1-like protein [Crassostrea gigas]
Length = 485
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 175/342 (51%), Positives = 237/342 (69%), Gaps = 16/342 (4%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L S ++++APMVDASEL WR+LSR+YG+ LCYTPM + F+ D R+E + + P+DRP
Sbjct: 28 LNSAKYVVAPMVDASELAWRMLSRKYGAQLCYTPMFHSSVFVRDPNYRKEAMQTCPDDRP 87
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LI+QFC ND +AA+ E CD +D+N+GCPQ +AKRGHYGA+L+D+W LL +V+
Sbjct: 88 LIVQFCANDPDTFLKAAQYVEDICDAVDLNLGCPQTIAKRGHYGAFLEDEWDLLKKMVAL 147
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
Q ++VP++CKIR+++ KT+ YA+MLE+AGCQLL VHGRT +Q+G TGLA W+ I
Sbjct: 148 CHQKLKVPITCKIRVFESKEKTIMYAQMLEQAGCQLLTVHGRTKEQKGRFTGLADWDIIK 207
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
VR++++IPV ANGNIQ L DVE C+ QTGV GVM+AEGNL+NPALFTG++ P W++A +
Sbjct: 208 LVRESVSIPVFANGNIQYLPDVERCIGQTGVQGVMSAEGNLHNPALFTGESPPIWKMAED 267
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL+L +YP L YARGH+F M HH L + + DVR ++ ++ R A L+ER +
Sbjct: 268 YLELAEKYPCPLSYARGHMFKMLHHSLNV--HPDVRDIIAVGKTLECFRLATLKLKERCL 325
Query: 446 ----DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTP 483
Y E L+P L P WICQPYVRP P
Sbjct: 326 ADAEKYKENPDLFP----------SELPFPYWICQPYVRPNP 357
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 49/64 (76%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
L S ++++APMVDASEL WR+LSR+YG+ LCYTPM + F+ D R+E + + P+DRP
Sbjct: 28 LNSAKYVVAPMVDASELAWRMLSRKYGAQLCYTPMFHSSVFVRDPNYRKEAMQTCPDDRP 87
Query: 136 LIIQ 139
LI+Q
Sbjct: 88 LIVQ 91
>gi|242002314|ref|XP_002435800.1| tRNA-dihydrouridine synthase, putative [Ixodes scapularis]
gi|215499136|gb|EEC08630.1| tRNA-dihydrouridine synthase, putative [Ixodes scapularis]
Length = 483
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 176/338 (52%), Positives = 234/338 (69%), Gaps = 8/338 (2%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L SPR+++APMVD SEL WRLL RR+G+ LCYTPM+ A F+ D K R++ L S ED+P
Sbjct: 15 LKSPRYVVAPMVDQSELAWRLLGRRHGAQLCYTPMLHASVFLKDPKYRRDALASCDEDQP 74
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
L++QFC ND + L +A++L HC +D+N+GCPQ +A+ GHYGA+LQDDW LL +V
Sbjct: 75 LVVQFCANDPEVLVQASRLVVGHCCAVDLNLGCPQAIARAGHYGAFLQDDWDLLARMVQR 134
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+ V VP++CK+R++ +V KTV YA+MLE AGCQ+L VHGRT +Q+G +TGLASWEHI
Sbjct: 135 VHTQVDVPITCKVRVFPEVEKTVRYAQMLEAAGCQVLTVHGRTREQKGPHTGLASWEHIR 194
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
AV++++ IPVIANGNIQ L D E CL +TG VM+AEG+L+NP LFTG+ P WE + E
Sbjct: 195 AVKRSVKIPVIANGNIQYLEDAERCLRETGADAVMSAEGHLHNPYLFTGRLAPVWEASLE 254
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL LV +P Y RGH+F + HH LT+ EN D+R + K + ++ + LR+R
Sbjct: 255 YLCLVRDHPCPASYVRGHLFKLMHHCLTMAENVDLREKLAKASALEAFEEVALRLRDRL- 313
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTP 483
+ R P P +S L PPWICQPYVRP P
Sbjct: 314 ---QSRTWEPEPGSAQAS----LPFPPWICQPYVRPDP 344
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 52/68 (76%), Gaps = 1/68 (1%)
Query: 73 WTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP 131
WT+ L SPR+++APMVD SEL WRLL RR+G+ LCYTPM+ A F+ D K R++ L S
Sbjct: 11 WTRTLKSPRYVVAPMVDQSELAWRLLGRRHGAQLCYTPMLHASVFLKDPKYRRDALASCD 70
Query: 132 EDRPLIIQ 139
ED+PL++Q
Sbjct: 71 EDQPLVVQ 78
>gi|432872012|ref|XP_004072073.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like [Oryzias latipes]
Length = 882
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/342 (53%), Positives = 234/342 (68%), Gaps = 12/342 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L RF++APMVD SEL WRLLSRR+G+ LCYTPM A F+ D R+E L S ED
Sbjct: 14 LKGARFVVAPMVDQSELAWRLLSRRHGAQLCYTPMFHAQVFVRDANYRRENLYSEVCEED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI QFC ND + +AA LA+ +CD +D+N+GCPQM+AKRGHYG +LQD+W LL ++
Sbjct: 74 RPLITQFCANDPEVFVQAALLAQDYCDAVDLNLGCPQMIAKRGHYGVFLQDEWDLLERMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR+++DV +TV YA+MLE+AGCQLL VHGRT DQ+G TG+ASWEH
Sbjct: 134 RLAHEKLSVPVTCKIRVFEDVERTVRYAQMLEKAGCQLLTVHGRTKDQKGPMTGVASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQ L DVE C+ +TGV GVM+AEGNL+NPALF G++ P WE+A
Sbjct: 194 IKAVRKAVNIPVFANGNIQHLGDVERCIQETGVQGVMSAEGNLHNPALFEGRSPPXWEMA 253
Query: 384 SEYLDLVAQY-PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRE 442
EYL++V ++ P L Y R H+F + HH TL + D+R + K ++ L + LR
Sbjct: 254 DEYLEVVQRHPPCSLSYVRAHLFKLWHH--TLQIHQDLREELAKVKTLQALAEVSSQLRR 311
Query: 443 RFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPE 484
R + K + L LP WICQPYVRP P+
Sbjct: 312 RCQEERAKGK-------GAELSESTLPLPHWICQPYVRPEPK 346
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Query: 71 DAW-TQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
D W T L RF++APMVD SEL WRLLSRR+G+ LCYTPM A F+ D R+E L S
Sbjct: 8 DFWRTTLKGARFVVAPMVDQSELAWRLLSRRHGAQLCYTPMFHAQVFVRDANYRRENLYS 67
Query: 130 T--PEDRPLIIQ 139
EDRPLI Q
Sbjct: 68 EVCEEDRPLITQ 79
>gi|348517925|ref|XP_003446483.1| PREDICTED: tRNA-dihydrouridine synthase 1 [Oreochromis niloticus]
Length = 490
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/343 (52%), Positives = 235/343 (68%), Gaps = 12/343 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L R+++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L S ED
Sbjct: 14 LKEARYVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRRENLYSEVCEED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYG +LQD+W LL +V
Sbjct: 74 RPLITQFCANDPEVFLQAALLAQDYCDAIDLNLGCPQMIAKRGHYGVFLQDEWDLLEKMV 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
S + ++VP++CKIR++++V KTV YA+MLE+AGCQLL VHGRT DQ+G TG+ASWEH
Sbjct: 134 SLANEKLKVPITCKIRVFKEVEKTVRYAQMLEKAGCQLLTVHGRTKDQKGAMTGIASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVR+A+ IPV ANGNIQ L+DVE C+ +TGV GVM+AEGNL+NPALF G++ WE+A
Sbjct: 194 IKAVRQAVNIPVFANGNIQHLSDVERCIQETGVQGVMSAEGNLHNPALFEGRSPAVWEMA 253
Query: 384 SEYLDLVAQY-PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRE 442
EYL++V +Y P L Y R H+F + HH L + + D+R + K ++ L LR
Sbjct: 254 EEYLEVVKRYPPCTLSYVRAHLFKLWHHTLQI--HQDLREELAKVKTLEGLADVSKQLRL 311
Query: 443 RFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
R + K L P WICQPYVRP P++
Sbjct: 312 RCQEEIAKEK-------DSEDKESRLPFPHWICQPYVRPVPKE 347
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 133
L R+++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L S ED
Sbjct: 14 LKEARYVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRRENLYSEVCEED 73
Query: 134 RPLIIQ 139
RPLI Q
Sbjct: 74 RPLITQ 79
>gi|395826764|ref|XP_003786585.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like [Otolemur garnettii]
Length = 476
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/343 (53%), Positives = 234/343 (68%), Gaps = 14/343 (4%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ HCD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDHCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +QRG +G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQRGPLSGAASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+TIPV ANGNIQCL DVE CL TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVTIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT-NHIKDLRKAVDMLRE 442
EYLDLV Q+P L Y R H+F + HH L + + L KT I + + + +
Sbjct: 254 EEYLDLVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREELAKVKTLEGIAAVSLELKLRCQ 313
Query: 443 RFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
+ +G K PP + P WICQPY+RP P +
Sbjct: 314 EEMSRWQGEK--PPSDLPFFH---------WICQPYIRPGPRE 345
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+ W+Q LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 8 EFWSQTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYC 67
Query: 130 T--PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 68 EVCPEDRPLIVQ 79
>gi|440897673|gb|ELR49313.1| tRNA-dihydrouridine synthase 1-like protein [Bos grunniens mutus]
Length = 475
Score = 369 bits (946), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 180/342 (52%), Positives = 236/342 (69%), Gaps = 11/342 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
LG R ++APMVD SEL WRLLSRR+G+HLCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAHLCYTPMLHAQVFVRDANYRKENLYCDVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+TIPV ANGNIQCL DVE C+ TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVTIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYLD+V Q+P L Y R H+F + HH TL + +R + K ++ + L+ R
Sbjct: 254 EEYLDIVRQHPCPLSYVRAHLFKLWHH--TLQVHQQLREELAKVKTLEGIAAVSQELKLR 311
Query: 444 FIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
+ +K P+ + H WICQPY RP P++
Sbjct: 312 CQEDISRQKEGEKPSGGLPFFH-------WICQPYFRPGPKE 346
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 52/72 (72%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+ W++ LG R ++APMVD SEL WRLLSRR+G+HLCYTPM+ A F+ D R+E L
Sbjct: 8 EFWSRTLGGARHVVAPMVDQSELAWRLLSRRHGAHLCYTPMLHAQVFVRDANYRKENLYC 67
Query: 130 --TPEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 68 DVCPEDRPLIVQ 79
>gi|307206649|gb|EFN84621.1| tRNA-dihydrouridine synthase 1-like [Harpegnathos saltator]
Length = 304
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 170/271 (62%), Positives = 212/271 (78%)
Query: 141 TIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 200
++ LGSPR I+APMVDASELPWRLLSRR+G+ LCYTPM+ + F D K R+E L ST
Sbjct: 21 NVWEDLGSPRCIVAPMVDASELPWRLLSRRHGAELCYTPMLHSSVFCRDPKYRREALTST 80
Query: 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
EDRPLI+QFCG+D + L EAA+LAEP+CD +DINIGCPQ +AKRGHYGA+LQDDW LL
Sbjct: 81 SEDRPLIVQFCGSDPEVLLEAARLAEPYCDAVDINIGCPQAIAKRGHYGAFLQDDWDLLQ 140
Query: 261 NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320
+VS+L++ +++PV+CK+R++ +V +TVEYARMLE AG LL VHGRT +Q+G TGLAS
Sbjct: 141 KIVSTLKRGLRIPVTCKLRVFPEVGRTVEYARMLENAGASLLTVHGRTREQKGPLTGLAS 200
Query: 321 WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW 380
WEHI AV+ A+ IPVIANGNIQC+ D++ C+ +T V GVM+AEGNLYNP +F W
Sbjct: 201 WEHIKAVKAAVKIPVIANGNIQCMQDLQRCIKETQVQGVMSAEGNLYNPYIFESCYPACW 260
Query: 381 ELASEYLDLVAQYPVRLQYARGHVFNMCHHL 411
E A EYLDLV QYP Y RGH+F M HH+
Sbjct: 261 EPALEYLDLVEQYPAPASYIRGHLFKMFHHV 291
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 55/70 (78%)
Query: 70 SDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
S+ W LGSPR I+APMVDASELPWRLLSRR+G+ LCYTPM+ + F D K R+E L S
Sbjct: 20 SNVWEDLGSPRCIVAPMVDASELPWRLLSRRHGAELCYTPMLHSSVFCRDPKYRREALTS 79
Query: 130 TPEDRPLIIQ 139
T EDRPLI+Q
Sbjct: 80 TSEDRPLIVQ 89
>gi|147906386|ref|NP_001086550.1| dihydrouridine synthase 1-like [Xenopus laevis]
gi|49903669|gb|AAH76792.1| MGC83715 protein [Xenopus laevis]
Length = 464
Score = 367 bits (942), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 178/341 (52%), Positives = 231/341 (67%), Gaps = 11/341 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L S R++LAPMVD SEL WRLLSRR+G LCYTPM+ A F+ D R+E L ED
Sbjct: 8 LRSARYVLAPMVDQSELAWRLLSRRHGVQLCYTPMLHAQVFVRDANYRKENLYCERCSED 67
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 68 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLEKMI 127
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
Q + VPV+CKIR++ ++ KTV+YA+MLE+AGCQLL VHGRT +Q+G TG+ASWEH
Sbjct: 128 QLAHQKLSVPVTCKIRVFPEMEKTVQYAKMLEKAGCQLLTVHGRTKEQKGSLTGIASWEH 187
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVR A+ IPV ANGNIQ L DVE C+ +T V GVM+AEGNL+NPALF G+ WE+
Sbjct: 188 IKAVRNAVNIPVFANGNIQYLNDVERCMRETAVQGVMSAEGNLHNPALFEGRNPVVWEMT 247
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYLDLV Q+P L + R H+F + HH TL + ++R + K + L++R
Sbjct: 248 EEYLDLVQQFPCSLSFVRAHLFKLWHH--TLQVHQELREELAKAKTFGSVMAVNRELKQR 305
Query: 444 FIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPE 484
+ +K+ +L LP WICQPYVRP P+
Sbjct: 306 CQEEARNQKVG-------EVAAGDLPLPHWICQPYVRPLPK 339
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
D W L S R++LAPMVD SEL WRLLSRR+G LCYTPM+ A F+ D R+E L
Sbjct: 2 DFWKNTLRSARYVLAPMVDQSELAWRLLSRRHGVQLCYTPMLHAQVFVRDANYRKENLYC 61
Query: 130 T--PEDRPLIIQ 139
EDRPLI+Q
Sbjct: 62 ERCSEDRPLIVQ 73
>gi|73964669|ref|XP_848227.1| PREDICTED: tRNA-dihydrouridine synthase 1-like isoform 2 [Canis
lupus familiaris]
Length = 475
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 185/349 (53%), Positives = 236/349 (67%), Gaps = 25/349 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV+YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE C+ TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVAIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTL-----PENSDVRLLVGKT--NHIKDLRKA 436
EYLD+V Q+P L Y R H+F + HH L + E + V+ L G T N LR
Sbjct: 254 EEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQELREELAKVKTLEGVTAVNQELKLRCQ 313
Query: 437 VDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
D+ R++ EG K P P WICQPY RP P +
Sbjct: 314 EDISRQK-----EGEK--PSGGLPFFH---------WICQPYFRPGPRE 346
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+ W++ LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 8 EFWSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYC 67
Query: 130 T--PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 68 EVCPEDRPLIVQ 79
>gi|41054535|ref|NP_955911.1| tRNA-dihydrouridine synthase 1-like [Danio rerio]
gi|37589069|gb|AAH58873.1| Dihydrouridine synthase 1-like (S. cerevisiae) [Danio rerio]
Length = 479
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 175/343 (51%), Positives = 236/343 (68%), Gaps = 15/343 (4%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS--TPED 203
L RF++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L S ED
Sbjct: 14 LKGARFVVAPMVDQSELAWRLLSRRHGAELCYTPMLHAQVFVRDANYRRENLYSEVNQED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYG +LQD+W LL ++
Sbjct: 74 RPLITQFCANDPEVFIQAALLAQDYCDAIDLNLGCPQMIAKRGHYGVFLQDEWDLLEKMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VP++CKIR++ ++ KTV+YA+MLE+AGCQLL VHGRT DQ+G TG+ASW+H
Sbjct: 134 KLANEKLSVPITCKIRVFPEIEKTVKYAKMLEKAGCQLLTVHGRTKDQKGALTGIASWKH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVR+A+ IPV ANGNIQ L+DV C+ +TGV GVM+AEGNL+NPALF G++ P WE+A
Sbjct: 194 IKAVREAVNIPVFANGNIQHLSDVHHCMEETGVQGVMSAEGNLHNPALFEGRSPPVWEMA 253
Query: 384 SEYLDLVAQY-PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRE 442
EYLD+V ++ P L + R H+F + HH L + + D+R + K ++ + + L++
Sbjct: 254 EEYLDIVEKHSPCSLSFVRAHIFKLWHHTLQI--HQDLREDLAKAKNVDGIVEVNRQLKQ 311
Query: 443 RFI-DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPE 484
R + + W N L P WICQPYVRP P+
Sbjct: 312 RCQEEMAKDESEW---------NQTGLPFPHWICQPYVRPPPK 345
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS--TPED 133
L RF++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L S ED
Sbjct: 14 LKGARFVVAPMVDQSELAWRLLSRRHGAELCYTPMLHAQVFVRDANYRRENLYSEVNQED 73
Query: 134 RPLIIQ 139
RPLI Q
Sbjct: 74 RPLITQ 79
>gi|355569040|gb|EHH25321.1| hypothetical protein EGK_09121 [Macaca mulatta]
Length = 473
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 180/343 (52%), Positives = 232/343 (67%), Gaps = 15/343 (4%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE CL TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT-NHIKDLRKAVDMLRE 442
EYLD+V ++P L Y R H+F + HH L + + L KT I + + + + +
Sbjct: 254 EEYLDIVREHPCPLSYVRAHLFKLWHHTLQVYQQLREELAKAKTLEGIAAVSQELKLRCQ 313
Query: 443 RFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
I EG K P + P WICQPY+RP P +
Sbjct: 314 EEISRQEGAK--PTGDLPFH----------WICQPYIRPGPRE 344
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 49/70 (70%), Gaps = 3/70 (4%)
Query: 73 WTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST- 130
W++ L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 10 WSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEV 69
Query: 131 -PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 70 CPEDRPLIVQ 79
>gi|224074477|ref|XP_002197358.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Taeniopygia guttata]
Length = 486
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 178/345 (51%), Positives = 240/345 (69%), Gaps = 15/345 (4%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM--STPED 203
L S +++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L + PED
Sbjct: 14 LRSAHYVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFLRDANYRRENLYGEACPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VP++CKIRI+ D++KTV+YA+MLE+AGCQLL VHGRT +Q+G G+ASWEH
Sbjct: 134 LLANEKLSVPITCKIRIFPDIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLAGVASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL+DV+ C+ +TGV GVM+AEGNL+NPALF G+ WE+A
Sbjct: 194 IQAVRKAVNIPVFANGNIQCLSDVQECIRKTGVHGVMSAEGNLHNPALFEGRNPLVWEMA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT-NHIKDLRKAVDM-LR 441
EYL++V +YP L Y R H+F + HH L + + L KT + I D+ + + + +
Sbjct: 254 EEYLEIVRKYPCPLSYVRAHLFKLWHHTLQVYQQLREELAKVKTLDGIVDVNRELKLRCQ 313
Query: 442 ERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQQ 486
E + EG K P P WICQPY+RP P+++
Sbjct: 314 EEIANQKEGEK--PKEGLPFFH---------WICQPYIRPGPKER 347
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM--STPED 133
L S +++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L + PED
Sbjct: 14 LRSAHYVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFLRDANYRRENLYGEACPED 73
Query: 134 RPLIIQ 139
RPLI+Q
Sbjct: 74 RPLIVQ 79
>gi|301615796|ref|XP_002937362.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Xenopus (Silurana)
tropicalis]
Length = 486
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 179/341 (52%), Positives = 230/341 (67%), Gaps = 11/341 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L RF+LAPMVD SEL WRLLSRR+G LCYTPM+ A F+ D R+E L ED
Sbjct: 27 LRGARFVLAPMVDQSELAWRLLSRRHGVQLCYTPMLHAQVFVRDANYRKENLYCEVCSED 86
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL +V
Sbjct: 87 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLEKMV 146
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
Q + VPV+CKIR++ ++ KTVEYA+MLE+AGCQLL VHGRT +Q+G TG+ASWEH
Sbjct: 147 QLAHQKLSVPVTCKIRVFPEIEKTVEYAKMLEKAGCQLLTVHGRTKEQKGPLTGIASWEH 206
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVR A+ IPV ANGNIQ L D E C+ +T V GVM+AEGNL+NPALF G+ WE+A
Sbjct: 207 IKAVRNAVNIPVFANGNIQYLNDAERCMRETAVQGVMSAEGNLHNPALFEGRNPVVWEMA 266
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYLDLV Q+P L + R H+F + HH TL + ++R + K ++ + L++R
Sbjct: 267 EEYLDLVRQFPCSLSFVRAHLFKLWHH--TLQVHQELREELAKVKTLEGVMAVNRELKQR 324
Query: 444 FIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPE 484
+ + +L LP WICQPYVRP P+
Sbjct: 325 CQEEAHNHNVGEVAT-------GDLPLPHWICQPYVRPLPK 358
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
D W L RF+LAPMVD SEL WRLLSRR+G LCYTPM+ A F+ D R+E L
Sbjct: 21 DFWKNTLRGARFVLAPMVDQSELAWRLLSRRHGVQLCYTPMLHAQVFVRDANYRKENLYC 80
Query: 130 T--PEDRPLIIQ 139
EDRPLI+Q
Sbjct: 81 EVCSEDRPLIVQ 92
>gi|40807366|ref|NP_071439.3| tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Homo sapiens]
gi|74749069|sp|Q6P1R4.1|DUS1L_HUMAN RecName: Full=tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like;
AltName: Full=tRNA-dihydrouridine synthase 1-like
gi|38511481|gb|AAH62566.1| DUS1L protein [Homo sapiens]
gi|40787788|gb|AAH64918.1| Dihydrouridine synthase 1-like (S. cerevisiae) [Homo sapiens]
gi|313883632|gb|ADR83302.1| dihydrouridine synthase 1-like (S. cerevisiae) [synthetic
construct]
Length = 473
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 181/345 (52%), Positives = 234/345 (67%), Gaps = 19/345 (5%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE CL TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYLD+V ++P L Y R H+F + HH TL + ++R + K ++ + L+ R
Sbjct: 254 EEYLDIVREHPCPLSYVRAHLFKLWHH--TLQVHQELREELAKVKTLEGIAAVSQELKLR 311
Query: 444 F---IDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
I EG K P + P WICQPY+RP P +
Sbjct: 312 CQEEISRQEGAK--PTGDLPFH----------WICQPYIRPGPRE 344
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+ W++ L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 8 EFWSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYC 67
Query: 130 T--PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 68 EVCPEDRPLIVQ 79
>gi|431908634|gb|ELK12226.1| tRNA-dihydrouridine synthase 1-like protein [Pteropus alecto]
Length = 465
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 183/342 (53%), Positives = 234/342 (68%), Gaps = 21/342 (6%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ HCD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDHCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ D++KTV YARMLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPDIDKTVRYARMLEKAGCQLLTVHGRTKEQKGPLSGPASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE C+ TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVAIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYL +V ++P L Y R H+F + HH TL + +R + K ++ + A DM R++
Sbjct: 254 DEYLAIVQRHPCPLSYVRAHLFKLWHH--TLQVHQQLREELAKVKTLEGI-AAEDMSRQK 310
Query: 444 FIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
EG K P P WICQPY RP P++
Sbjct: 311 -----EGEK--PAGGLPFFH---------WICQPYFRPGPKE 336
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 73 WTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST- 130
W++ LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 10 WSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEV 69
Query: 131 -PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 70 CPEDRPLIVQ 79
>gi|114671086|ref|XP_001167386.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
isoform 2 [Pan troglodytes]
gi|397522142|ref|XP_003831137.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Pan paniscus]
gi|410211114|gb|JAA02776.1| dihydrouridine synthase 1-like [Pan troglodytes]
gi|410248012|gb|JAA11973.1| dihydrouridine synthase 1-like [Pan troglodytes]
gi|410299382|gb|JAA28291.1| dihydrouridine synthase 1-like [Pan troglodytes]
gi|410349231|gb|JAA41219.1| dihydrouridine synthase 1-like [Pan troglodytes]
Length = 473
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 181/345 (52%), Positives = 234/345 (67%), Gaps = 19/345 (5%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE CL TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYLD+V ++P L Y R H+F + HH TL + ++R + K ++ + L+ R
Sbjct: 254 EEYLDIVREHPCPLSYVRAHLFKLWHH--TLQVHQELREELAKVKTLEGIAAVSQELKLR 311
Query: 444 F---IDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
I EG K P + P WICQPY+RP P +
Sbjct: 312 CQEEISRQEGAK--PTGDLPFH----------WICQPYIRPGPRE 344
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+ W++ L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 8 EFWSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYC 67
Query: 130 T--PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 68 EVCPEDRPLIVQ 79
>gi|281348632|gb|EFB24216.1| hypothetical protein PANDA_000684 [Ailuropoda melanoleuca]
Length = 478
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 179/342 (52%), Positives = 234/342 (68%), Gaps = 8/342 (2%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV+YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE C+ TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVAIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYLD+V Q+P L Y R H+F + HH TL + +R + K ++ + L+ R
Sbjct: 254 EEYLDIVRQHPCPLSYVRAHLFKLWHH--TLQVHQQLREELAKVKTLEGVVAVNQELKLR 311
Query: 444 FIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
+G +W S L WICQPY+RP P +
Sbjct: 312 -CQAGDGAAVWQKEGEEPSG---GLPFFHWICQPYLRPGPRE 349
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 73 WTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST- 130
W++ LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 10 WSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEV 69
Query: 131 -PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 70 CPEDRPLIVQ 79
>gi|31980834|ref|NP_081100.2| tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Mus musculus]
gi|81898593|sp|Q8C2P3.1|DUS1L_MOUSE RecName: Full=tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like;
AltName: Full=tRNA-dihydrouridine synthase 1-like
gi|26353202|dbj|BAC40231.1| unnamed protein product [Mus musculus]
gi|148702860|gb|EDL34807.1| dihydrouridine synthase 1-like (S. cerevisiae), isoform CRA_b [Mus
musculus]
Length = 475
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 184/349 (52%), Positives = 235/349 (67%), Gaps = 25/349 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS--TPED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G G ASWEH
Sbjct: 134 LLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE C+ TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTL-----PENSDVRLLVG--KTNHIKDLRKA 436
EYLD+V Q+P L Y R H+F + HH L + E + V+ L G + LR
Sbjct: 254 EEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREELAKVKTLEGVAAVSQALKLRCQ 313
Query: 437 VDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
DM R++ EG + P N P WICQPY+RP P +
Sbjct: 314 EDMSRQQ-----EGVR--PADNLPAFH---------WICQPYIRPGPRE 346
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+ W++ LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 8 EFWSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYC 67
Query: 130 --TPEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 68 DVCPEDRPLIVQ 79
>gi|426346359|ref|XP_004040847.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Gorilla gorilla gorilla]
Length = 473
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 181/345 (52%), Positives = 234/345 (67%), Gaps = 19/345 (5%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE CL TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYLD+V ++P L Y R H+F + HH TL + ++R + K ++ + L+ R
Sbjct: 254 EEYLDIVREHPCPLSYVRAHLFKLWHH--TLQVHQELREELAKVKTLEGIAAVSQELKLR 311
Query: 444 F---IDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
I EG K P + P WICQPY+RP P +
Sbjct: 312 CQEEISRQEGVK--PTGDLPFH----------WICQPYIRPGPRE 344
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+ W++ L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 8 EFWSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYC 67
Query: 130 T--PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 68 EVCPEDRPLIVQ 79
>gi|402901418|ref|XP_003913647.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Papio anubis]
gi|355754478|gb|EHH58443.1| hypothetical protein EGM_08297 [Macaca fascicularis]
gi|380815520|gb|AFE79634.1| tRNA-dihydrouridine synthase 1-like [Macaca mulatta]
gi|383413827|gb|AFH30127.1| tRNA-dihydrouridine synthase 1-like [Macaca mulatta]
Length = 473
Score = 364 bits (935), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 180/343 (52%), Positives = 232/343 (67%), Gaps = 15/343 (4%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE CL TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT-NHIKDLRKAVDMLRE 442
EYLD+V ++P L Y R H+F + HH L + + L KT I + + + + +
Sbjct: 254 EEYLDIVREHPCPLSYVRAHLFKLWHHTLQVYQQLREELAKVKTLEGIAAVSQELKLRCQ 313
Query: 443 RFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
I EG K P + P WICQPY+RP P +
Sbjct: 314 EEISRQEGAK--PTGDLPFH----------WICQPYIRPGPRE 344
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+ W++ L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 8 EFWSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYC 67
Query: 130 T--PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 68 EVCPEDRPLIVQ 79
>gi|301754165|ref|XP_002912927.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Ailuropoda
melanoleuca]
Length = 475
Score = 364 bits (934), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 183/349 (52%), Positives = 236/349 (67%), Gaps = 25/349 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV+YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE C+ TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVAIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTL-----PENSDVRLLVG--KTNHIKDLRKA 436
EYLD+V Q+P L Y R H+F + HH L + E + V+ L G N LR
Sbjct: 254 EEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREELAKVKTLEGVVAVNQELKLRCQ 313
Query: 437 VDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
D+ R++ EG + P P WICQPY+RP P +
Sbjct: 314 EDISRQK-----EGEE--PSGGLPFFH---------WICQPYLRPGPRE 346
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+ W++ LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 8 EFWSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYC 67
Query: 130 T--PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 68 EVCPEDRPLIVQ 79
>gi|297702084|ref|XP_002828014.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
isoform 3 [Pongo abelii]
Length = 473
Score = 364 bits (934), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 180/345 (52%), Positives = 234/345 (67%), Gaps = 19/345 (5%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD +D+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAVDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE CL TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYLD+V ++P L Y R H+F + HH TL + ++R + K ++ + L+ R
Sbjct: 254 EEYLDIVREHPCPLSYVRAHLFKLWHH--TLQVHQELREELAKVKTLEGIAAVSQELKLR 311
Query: 444 F---IDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
I EG K P + P WICQPY+RP P +
Sbjct: 312 CQEEISRQEGVK--PTGDLPFH----------WICQPYIRPGPRE 344
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+ W++ L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 8 EFWSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYC 67
Query: 130 T--PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 68 EVCPEDRPLIVQ 79
>gi|114650483|ref|XP_001146302.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Pan troglodytes]
Length = 473
Score = 363 bits (933), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 180/345 (52%), Positives = 234/345 (67%), Gaps = 19/345 (5%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KT+ YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTMRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE CL TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYLD+V ++P L Y R H+F + HH TL + ++R + K ++ + L+ R
Sbjct: 254 EEYLDIVREHPCPLSYVRAHLFKLWHH--TLQVHQELREELAKVKTLEGIAAVSQELKLR 311
Query: 444 F---IDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
I EG K P + P WICQPY+RP P +
Sbjct: 312 CQEEISRQEGAK--PTGDLPFH----------WICQPYIRPGPRE 344
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+ W++ L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 8 EFWSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYC 67
Query: 130 T--PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 68 EVCPEDRPLIVQ 79
>gi|432119116|gb|ELK38336.1| tRNA-dihydrouridine synthase 1-like protein [Myotis davidii]
Length = 468
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 181/342 (52%), Positives = 235/342 (68%), Gaps = 18/342 (5%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 QRAHEQLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE CL TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IRAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYLDLV QYP L R H+F + HH TL + +R + K ++ + A +L+E
Sbjct: 254 EEYLDLVRQYPCPLSCVRAHLFKLWHH--TLQVHQQLREELAKAKTLEGV--AAGLLQED 309
Query: 444 FIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
+ R+ P+ + H WICQPY RP P++
Sbjct: 310 ML-----RQEGEGPSGGLPFFH-------WICQPYFRPGPKE 339
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+ W++ LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 8 EFWSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYC 67
Query: 130 T--PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 68 EVCPEDRPLIVQ 79
>gi|354469073|ref|XP_003496955.1| PREDICTED: tRNA-dihydrouridine synthase 1 [Cricetulus griseus]
Length = 475
Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 176/342 (51%), Positives = 234/342 (68%), Gaps = 11/342 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ ++ KTV YA+MLE+AGCQLL VHGRT +Q+G G ASWEH
Sbjct: 134 LLAHERLSVPVTCKIRVFPEIEKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNI+CL DVE C+ TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYLD+V Q+P L Y R H+F + HH TL + +R + K ++ + L+ R
Sbjct: 254 EEYLDIVQQHPCPLSYVRAHLFKLWHH--TLQVHQQLREELAKVKTLEGVAAVSQALKLR 311
Query: 444 FIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
+ ++ P +++ H WICQPY+RP P++
Sbjct: 312 CQEDMSRQQEGVRPAGNLAAFH-------WICQPYIRPGPKE 346
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+ W++ LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 8 EFWSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYC 67
Query: 130 T--PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 68 EVCPEDRPLIVQ 79
>gi|47937507|gb|AAH72076.1| MGC78973 protein [Xenopus laevis]
Length = 465
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 179/346 (51%), Positives = 230/346 (66%), Gaps = 23/346 (6%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L S ++LAPMVD SEL WRLLSRR+G LCYTPM+ A F+ D R+E L PED
Sbjct: 8 LQSACYVLAPMVDQSELAWRLLSRRHGVQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 67
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYG++LQD+W LL ++
Sbjct: 68 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGSFLQDEWDLLEKMI 127
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
Q + VPV+CKIR++ ++ KTVEYA+MLE+AGCQLL VHGRT +Q+G TG+ASWEH
Sbjct: 128 QLAHQKLSVPVTCKIRVFPEIEKTVEYAKMLEKAGCQLLTVHGRTKEQKGPLTGIASWEH 187
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVR A+ IPV ANGNIQ L DVE C+ +T V GVM+AEGNL+NPALF G+ WE+A
Sbjct: 188 IKAVRNAVIIPVFANGNIQYLNDVERCMRETAVQGVMSAEGNLHNPALFEGRNPVVWEMA 247
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTL-----PENSDVRLLVGKTNHIKDLRKAVD 438
EYLDLV Q+P L + R H+F + HH L + E + + L G ++L+
Sbjct: 248 EEYLDLVRQFPCSLSFVRAHLFKLWHHTLQIHQELREELAKAKTLEGVIVVNQNLKLKCQ 307
Query: 439 MLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPE 484
+F + G +L LP WICQPYVRP P+
Sbjct: 308 QEACKFGEVATG----------------DLPLPHWICQPYVRPLPK 337
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
D W L S ++LAPMVD SEL WRLLSRR+G LCYTPM+ A F+ D R+E L
Sbjct: 2 DFWNNTLQSACYVLAPMVDQSELAWRLLSRRHGVQLCYTPMLHAQVFVRDANYRKENLYC 61
Query: 130 T--PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 62 EVCPEDRPLIVQ 73
>gi|148223341|ref|NP_001085224.1| uncharacterized protein LOC432319 [Xenopus laevis]
gi|80477797|gb|AAI08778.1| MGC78973 protein [Xenopus laevis]
Length = 465
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 179/346 (51%), Positives = 230/346 (66%), Gaps = 23/346 (6%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L S ++LAPMVD SEL WRLLSRR+G LCYTPM+ A F+ D R+E L PED
Sbjct: 8 LQSACYVLAPMVDQSELAWRLLSRRHGVQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 67
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYG++LQD+W LL ++
Sbjct: 68 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGSFLQDEWDLLEKMI 127
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
Q + VPV+CKIR++ ++ KTVEYA+MLE+AGCQLL VHGRT +Q+G TG+ASWEH
Sbjct: 128 QLAHQKLSVPVTCKIRVFPEIEKTVEYAKMLEKAGCQLLTVHGRTKEQKGPLTGIASWEH 187
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVR A+ IPV ANGNIQ L DVE C+ +T V GVM+AEGNL+NPALF G+ WE+A
Sbjct: 188 IKAVRNAVIIPVFANGNIQYLNDVERCMRETAVQGVMSAEGNLHNPALFEGRNPVVWEMA 247
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTL-----PENSDVRLLVGKTNHIKDLRKAVD 438
EYLDLV Q+P L + R H+F + HH L + E + + L G ++L+
Sbjct: 248 EEYLDLVRQFPCSLSFVRAHLFKLWHHTLQIHQELREELAKAKTLEGVIVVNQNLKLKCQ 307
Query: 439 MLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPE 484
+F + G +L LP WICQPYVRP P+
Sbjct: 308 QEACKFGEVATG----------------DLPLPHWICQPYVRPLPK 337
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/72 (56%), Positives = 48/72 (66%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
D W L S ++LAPMVD SEL WRLLSRR+G LCYTPM+ A F+ D R+E L
Sbjct: 2 DFWNNTLQSACYVLAPMVDQSELAWRLLSRRHGVQLCYTPMLHAQVFVRDANYRKENLYC 61
Query: 130 T--PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 62 EVCPEDRPLIVQ 73
>gi|194216507|ref|XP_001490768.2| PREDICTED: tRNA-dihydrouridine synthase 1-like [Equus caballus]
Length = 475
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 183/349 (52%), Positives = 235/349 (67%), Gaps = 25/349 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE C+ TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVAIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTL-----PENSDVRLLVG--KTNHIKDLRKA 436
EYLD+V Q+P L Y R H+F + HH L + E + V+ L G + LR
Sbjct: 254 EEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREELAKVKTLEGIAAVSQELKLRCQ 313
Query: 437 VDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
D+ R++ EG K P+ L WICQPY RP P +
Sbjct: 314 EDISRQK-----EGEK-------PLG----GLPFFHWICQPYFRPGPRE 346
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+ W++ LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 8 EFWSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYC 67
Query: 130 T--PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 68 EVCPEDRPLIVQ 79
>gi|344291226|ref|XP_003417337.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Loxodonta africana]
Length = 477
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 180/342 (52%), Positives = 233/342 (68%), Gaps = 11/342 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLPGPASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA++IPV ANGNIQCL DVE CL TG GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IRAVRKAVSIPVFANGNIQCLRDVERCLQDTGAQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYL LV Q+P L Y R H+F + HH TL + +R + K ++D+ LR +
Sbjct: 254 EEYLVLVRQHPCPLSYVRAHLFKLWHH--TLQVHQQLREELAKAKTLEDVATVSRALRLQ 311
Query: 444 FIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
+ +K P+ + H WICQPYVRP P +
Sbjct: 312 CQEDMSRQKEGEKPSGGLPFFH-------WICQPYVRPGPRE 346
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+ W++ LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 8 EFWSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYC 67
Query: 130 T--PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 68 EVCPEDRPLIVQ 79
>gi|410901739|ref|XP_003964353.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like [Takifugu rubripes]
Length = 494
Score = 361 bits (927), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 173/338 (51%), Positives = 232/338 (68%), Gaps = 13/338 (3%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PEDRPLII 208
F++APMVD SEL WRLLSRR+G+ LCYTPM A F+ D R++ L + EDRPLI
Sbjct: 19 FVVAPMVDQSELAWRLLSRRHGAQLCYTPMFHAQVFVRDANYRRDNLYNEVCEEDRPLIT 78
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL +V +
Sbjct: 79 QFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWELLEKMVRLANE 138
Query: 269 AVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+ VP++CKIR+++++ KTV YARMLE+AGCQLL VHGRT +Q+G TG+ASWEHI AVR
Sbjct: 139 KLSVPITCKIRVFKELEKTVRYARMLEKAGCQLLTVHGRTKEQKGAMTGIASWEHIKAVR 198
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+A+ IPV ANGNIQ L+D+++CL +TGV GVM+AEGNL+NPALF G+ P WE+A EYL+
Sbjct: 199 QAVNIPVFANGNIQHLSDLKSCLQETGVQGVMSAEGNLHNPALFEGRXPPVWEMAEEYLE 258
Query: 389 LVAQY-PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFIDY 447
+V + P L Y R H+F + HH L + + D+R + K + L L++R +
Sbjct: 259 VVRKXSPCSLSYVRAHLFKLWHHTLQI--HQDLREDLAKVKTLDGLADVSKQLKQRCQE- 315
Query: 448 HEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
+ +L P WICQPYVRP P++
Sbjct: 316 -------EIARGTDAKKSGDLPFPHWICQPYVRPAPKE 346
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PEDRPLII 138
F++APMVD SEL WRLLSRR+G+ LCYTPM A F+ D R++ L + EDRPLI
Sbjct: 19 FVVAPMVDQSELAWRLLSRRHGAQLCYTPMFHAQVFVRDANYRRDNLYNEVCEEDRPLIT 78
Query: 139 Q 139
Q
Sbjct: 79 Q 79
>gi|403280349|ref|XP_003931682.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Saimiri boliviensis boliviensis]
Length = 473
Score = 361 bits (927), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 179/343 (52%), Positives = 231/343 (67%), Gaps = 15/343 (4%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R++ L PED
Sbjct: 14 LRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKDNLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLRRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQ L DVE C+ TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVAIPVFANGNIQSLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT-NHIKDLRKAVDMLRE 442
EYLD+V ++P L Y R H+F + HH L + + L KT I + + + M +
Sbjct: 254 EEYLDIVQEHPCPLSYVRAHLFKLWHHTLQVHQQLREELAKVKTLEGIAAVSQELKMRCQ 313
Query: 443 RFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
I EG K P + P WICQPYVRP P +
Sbjct: 314 EEISRQEGAK--PAGDLPFH----------WICQPYVRPGPRE 344
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 133
L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R++ L PED
Sbjct: 14 LRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKDNLYCEVCPED 73
Query: 134 RPLIIQ 139
RPLI+Q
Sbjct: 74 RPLIVQ 79
>gi|426238321|ref|XP_004013103.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Ovis aries]
Length = 475
Score = 360 bits (925), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 177/342 (51%), Positives = 233/342 (68%), Gaps = 11/342 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 LLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE C+ TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVAIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYLD+V Q+P L Y R H+F + HH TL + +R + K ++ + L+ R
Sbjct: 254 EEYLDIVRQHPCPLSYVRAHLFKLWHH--TLQVHQQLREELAKVKTLEGIAAVSQELKLR 311
Query: 444 FIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
+ +K P+ + H WICQPY RP P++
Sbjct: 312 CQEDISRQKEGEKPSGGLPFFH-------WICQPYFRPGPKE 346
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+ W++ L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 8 EFWSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYC 67
Query: 130 --TPEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 68 DVCPEDRPLIVQ 79
>gi|25282413|ref|NP_742015.1| tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Rattus
norvegicus]
gi|81866863|sp|Q8K582.1|DUS1L_RAT RecName: Full=tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like;
AltName: Full=Liver regeneration-related protein
LRRG08/LRRG09; AltName: Full=tRNA-dihydrouridine
synthase 1-like
gi|21105480|gb|AAM34683.1|AF508021_1 embryo-related protein [Rattus norvegicus]
gi|33187773|gb|AAP97740.1| liver regeneration-related protein LRRG08 [Rattus norvegicus]
gi|33187775|gb|AAP97741.1| liver regeneration-related protein LRRG09 [Rattus norvegicus]
Length = 438
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 182/349 (52%), Positives = 235/349 (67%), Gaps = 25/349 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS--TPED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRG YGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G G ASWEH
Sbjct: 134 LLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNI+CL DVE C+ TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTL-----PENSDVRLLVG--KTNHIKDLRKA 436
EYLD+V Q+P L Y R H+F + HH L + E + V+ L G + LR
Sbjct: 254 DEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREELAKVKTLEGVAAVSQALKLRCQ 313
Query: 437 VDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
DM R++ EG + P N P WICQPY+RP P++
Sbjct: 314 EDMARQQ-----EGVR--PADNLPAFH---------WICQPYIRPGPKE 346
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 73 WTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS-- 129
W++ LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 10 WSRALGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDV 69
Query: 130 TPEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 70 CPEDRPLIVQ 79
>gi|444727706|gb|ELW68184.1| tRNA-dihydrouridine synthase 1-like protein [Tupaia chinensis]
Length = 472
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 178/345 (51%), Positives = 233/345 (67%), Gaps = 18/345 (5%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS--TPED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRRENLYCDVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD +D+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQGYCDAVDLNLGCPQMIAKRGHYGAFLQEEWDLLQRII 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLAGAASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNI+CL DVE C+ TGV GVMTAEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVGIPVFANGNIRCLQDVERCIRDTGVQGVMTAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYL+LV Q+P L Y R H+F + HH TL + +R L+ K ++ + L+ R
Sbjct: 254 EEYLELVRQHPCPLSYVRAHLFKLWHH--TLQVHQPLRELLAKVKTLEGVAAVSQELKLR 311
Query: 444 F---IDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
+ EG + +L WICQPY+RP P +
Sbjct: 312 CQEEMSRQEG-----------ETTASHLPQSHWICQPYLRPGPRE 345
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+ W++ LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 8 EFWSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRRENLYC 67
Query: 130 --TPEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 68 DVCPEDRPLIVQ 79
>gi|417401582|gb|JAA47671.1| Putative trna-dihydrouridine synthase [Desmodus rotundus]
Length = 475
Score = 358 bits (919), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 176/342 (51%), Positives = 233/342 (68%), Gaps = 11/342 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC N+ + +A LA+ CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANNPEVFVQAGLLAQDCCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 QLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGSASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVR+A++IPV ANGNIQCL DVE C+ TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IRAVRRAVSIPVFANGNIQCLRDVERCIRDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYLDLV Q+P L Y R H+F + HH TL + +R + K ++ + L+ R
Sbjct: 254 EEYLDLVRQHPCPLSYVRAHLFKLWHH--TLQVHQQLREELAKVKTLEGIAAVSQELKLR 311
Query: 444 FIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
+ +K P+ + H WICQPY RP P++
Sbjct: 312 CQEDMCRQKEGEEPSGGLPFFH-------WICQPYFRPGPKE 346
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 133
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 134 RPLIIQ 139
RPLI+Q
Sbjct: 74 RPLIVQ 79
>gi|312382630|gb|EFR28023.1| hypothetical protein AND_04540 [Anopheles darlingi]
Length = 708
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 179/372 (48%), Positives = 237/372 (63%), Gaps = 57/372 (15%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LGSPR+++APMVDASEL WRLLSRR+G+ LCY+PM + F D K R++ L + PEDRP
Sbjct: 155 LGSPRYVVAPMVDASELAWRLLSRRHGAQLCYSPMFHSSCFSKDPKYRKDSLQTCPEDRP 214
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL--- 262
LIIQFCGND K + +AA LA+ HCD IDIN+GCPQ +AKRGHYGA+LQD+W LL +
Sbjct: 215 LIIQFCGNDPKVMLQAALLAQDHCDAIDINLGCPQAIAKRGHYGAFLQDEWELLREIGQQ 274
Query: 263 -VSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+S+L + +PV+CKIRI++D++KT+ YARML+ AG QLL VHGRT +Q+G TGLA W
Sbjct: 275 TMSTLHCHLAIPVTCKIRIFEDMSKTIRYARMLQDAGAQLLTVHGRTREQKGPLTGLADW 334
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWE 381
+++T +RK L++P+ +NGNI + DVE C+ +TGV GVMTAEGNLYNPALF G +WE
Sbjct: 335 KYVTVLRKQLSVPIFSNGNIMSVHDVERCIEETGVNGVMTAEGNLYNPALFEGINPVSWE 394
Query: 382 LASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLR 441
+A+EYLDLV +P + Y R +R + + + R V L+
Sbjct: 395 MANEYLDLVEHFPAPISYIRA-----------------LREELAVCRSVAEFRAVVVELK 437
Query: 442 ERFIDYHEGRKLW-----------------------------PPPNYPMSSNHHNLSLPP 472
+R+ YH+G W PP+Y NL LPP
Sbjct: 438 KRYQPYHDGLLKWTGEEEEPTKQSEDDVGSDESTKEESSSQPAPPDY-------NLQLPP 490
Query: 473 WICQPYVRPTPE 484
W+CQPY+R PE
Sbjct: 491 WLCQPYIRIPPE 502
Score = 91.7 bits (226), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 51/64 (79%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LGSPR+++APMVDASEL WRLLSRR+G+ LCY+PM + F D K R++ L + PEDRP
Sbjct: 155 LGSPRYVVAPMVDASELAWRLLSRRHGAQLCYSPMFHSSCFSKDPKYRKDSLQTCPEDRP 214
Query: 136 LIIQ 139
LIIQ
Sbjct: 215 LIIQ 218
>gi|348558134|ref|XP_003464873.1| PREDICTED: tRNA-dihydrouridine synthase 1 [Cavia porcellus]
Length = 468
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 182/349 (52%), Positives = 233/349 (66%), Gaps = 25/349 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 QLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNI+ L DVE CL TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVAIPVFANGNIRSLQDVERCLQDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTL-----PENSDVRLLVG--KTNHIKDLRKA 436
EYL++V +P L R H+F + HH L + E + V+ L G +H LR
Sbjct: 254 EEYLNIVRLHPCPLSCVRAHLFKLWHHTLQVHQQLRDELAKVKTLEGIAAVSHALKLRSQ 313
Query: 437 VDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
DM R+ EG + P N P WICQPYVRP P +
Sbjct: 314 EDMSRQ-----EEG--VQPAGNLPFFH---------WICQPYVRPGPRE 346
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+ W++ LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 8 EFWSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYC 67
Query: 130 --TPEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 68 DVCPEDRPLIVQ 79
>gi|395533185|ref|XP_003768641.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Sarcophilus harrisii]
Length = 481
Score = 357 bits (917), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 176/344 (51%), Positives = 234/344 (68%), Gaps = 15/344 (4%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L +++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LQGAHYVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVKAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQKMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV+YA++LE+AGCQLL VHGRT +Q+G +G+ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVKYAQLLEKAGCQLLTVHGRTKEQKGPLSGIASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQ L DVE C+ +TGV GVM+AEGNL+NPALF G+ WE+A
Sbjct: 194 IKAVRKAVNIPVFANGNIQYLHDVEKCIQETGVHGVMSAEGNLHNPALFEGRNPLVWEMA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT-NHIKDLRKAVDM-LR 441
EYL++V Q+P L Y R H+F + HH L + + L KT I D+ + + + +
Sbjct: 254 EEYLEIVQQHPCPLSYVRAHLFKLWHHTLQIHQQLREELAKVKTLEGIADVSRELKLRCQ 313
Query: 442 ERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
E EG K P P WICQPYVRP P++
Sbjct: 314 EEMASQKEGEK--PKGGLPFFH---------WICQPYVRPGPKE 346
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 133
L +++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LQGAHYVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPED 73
Query: 134 RPLIIQ 139
RPLI+Q
Sbjct: 74 RPLIVQ 79
>gi|334323209|ref|XP_001379483.2| PREDICTED: tRNA-dihydrouridine synthase 1-like [Monodelphis
domestica]
Length = 481
Score = 357 bits (916), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 176/344 (51%), Positives = 234/344 (68%), Gaps = 15/344 (4%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L +++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LQGAHYVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVKAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV+YA++LE+AGCQLL VHGRT +Q+G +G+ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVKYAQLLEKAGCQLLTVHGRTKEQKGPLSGIASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQ L DVE C+ +TGV GVM+AEGNL+NPALF G+ WE+A
Sbjct: 194 IKAVRKAVNIPVFANGNIQYLHDVEKCIQETGVHGVMSAEGNLHNPALFEGRNPLVWEMA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT-NHIKDLRKAVDM-LR 441
EYL++V Q+P L Y R H+F + HH L + + L KT I D+ + + + +
Sbjct: 254 EEYLEIVQQHPCPLSYVRAHLFKLWHHTLQIHQQLREELAKVKTLEGIADVSRELKLRCQ 313
Query: 442 ERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
E EG K P P WICQPYVRP P++
Sbjct: 314 EEMASQKEGEK--PKGGLPFFH---------WICQPYVRPGPKE 346
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 133
L +++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LQGAHYVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPED 73
Query: 134 RPLIIQ 139
RPLI+Q
Sbjct: 74 RPLIVQ 79
>gi|410982040|ref|XP_003997371.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like [Felis catus]
Length = 452
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 181/349 (51%), Positives = 232/349 (66%), Gaps = 25/349 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R++ L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKDNLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD +D+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAVDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV+YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+TIPV ANGNIQCL DVE C+ TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVTIPVFANGNIQCLQDVERCIRDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCH-----HLLTLPENSDVRLLVG--KTNHIKDLRKA 436
EYLD+V Q+P L R H+F H E + V+ L G + LR
Sbjct: 254 EEYLDIVRQHPCPLSCVRAHLFKXXXXXXXVHRQLREELAKVKTLXGIAAVSQELKLRCQ 313
Query: 437 VDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
DM R++ EG K PP P WICQPY RP P +
Sbjct: 314 EDMSRQK-----EGEK--PPGGLPFFH---------WICQPYFRPGPRE 346
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+ W++ LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R++ L
Sbjct: 8 EFWSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKDNLYC 67
Query: 130 T--PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 68 EVCPEDRPLIVQ 79
>gi|327265085|ref|XP_003217339.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Anolis
carolinensis]
Length = 485
Score = 353 bits (907), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 174/346 (50%), Positives = 230/346 (66%), Gaps = 19/346 (5%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L S RF++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LKSARFVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD +D+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEIFVQAALLAQDYCDAVDLNLGCPQMIAKRGHYGAFLQEEWDLLRRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VP++CKIR++ ++ KTV+YA++LE AGCQLL VHGRT +Q+G G+ASWEH
Sbjct: 134 MLANEKLSVPITCKIRVFPEIAKTVKYAQLLEEAGCQLLTVHGRTKEQKGPLAGVASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGN+Q L DVE C+ +TGV GVM+AEGNL+NPALF G+ WE+A
Sbjct: 194 IQAVRKAVNIPVFANGNVQYLNDVEKCIQKTGVQGVMSAEGNLHNPALFEGRNPVVWEMA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLR-- 441
EYL++V QYP L Y R H+F + HH TL + +R + K + L L+
Sbjct: 254 EEYLEIVQQYPCPLSYVRAHLFKLWHH--TLQVHHRLRDELAKVKSLDGLIAVNQELKLH 311
Query: 442 --ERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
+ EG P P WICQPY+RP P++
Sbjct: 312 CQKEIAQLKEGEN--PQGGLPFFH---------WICQPYLRPGPKE 346
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 133
L S RF++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LKSARFVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPED 73
Query: 134 RPLIIQ 139
RPLI+Q
Sbjct: 74 RPLIVQ 79
>gi|351706438|gb|EHB09357.1| tRNA-dihydrouridine synthase 1-like protein [Heterocephalus glaber]
Length = 481
Score = 353 bits (907), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 176/344 (51%), Positives = 230/344 (66%), Gaps = 9/344 (2%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS--TPED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQL+ VHGRT +Q+G +G ASWEH
Sbjct: 134 QLAHEKLSVPVTCKIRVFSEIDKTVRYAQMLEKAGCQLVTVHGRTKEQKGPLSGAASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNI+ L DVE C+ TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVAIPVFANGNIRSLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYLD+V +P L R H+F + HH TL + +R + K ++ + L+ R
Sbjct: 254 EEYLDIVRLHPCPLSCVRAHLFKLWHH--TLQVHQQLRDELAKVKTLEGIAAVSQALKLR 311
Query: 444 FIDYHEGRKLWPPPNYPMSSNHHNLSLP--PWICQPYVRPTPEQ 485
G L P + LP WICQPYVRP P +
Sbjct: 312 ---CQAGVGLREPTVWQEEGAQPAGDLPFFHWICQPYVRPGPRE 352
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 73 WTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS-- 129
W++ LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 10 WSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDV 69
Query: 130 TPEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 70 CPEDRPLIVQ 79
>gi|196000454|ref|XP_002110095.1| hypothetical protein TRIADDRAFT_21776 [Trichoplax adhaerens]
gi|190588219|gb|EDV28261.1| hypothetical protein TRIADDRAFT_21776 [Trichoplax adhaerens]
Length = 427
Score = 351 bits (901), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 167/337 (49%), Positives = 224/337 (66%), Gaps = 11/337 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L ++++APMVD SEL WRLL RRYG+ LCYTPM+ + FI D R+E + PEDRP
Sbjct: 8 LQQAKYVVAPMVDQSELAWRLLCRRYGAQLCYTPMLHSAVFIRDATYRRENFKTCPEDRP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LI+QFCGND L +AAK+ EPHCD +D+N+GCPQ +AKRGHYGA+LQDDW LL +VS
Sbjct: 68 LIVQFCGNDPDTLLKAAKIVEPHCDAVDLNLGCPQAIAKRGHYGAFLQDDWKLLEKIVSH 127
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L Q +++PV+CKIRI+ D++KTV+YA++LE+AGCQLL VHGRT +Q+ TGLA W I
Sbjct: 128 LHQNLKIPVTCKIRIFNDLDKTVKYAQLLEKAGCQLLTVHGRTREQKKELTGLADWNFIK 187
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
++ +L+IPV ANGNIQ D+E C TGV G+M+AEG L NPALF+G+ W++A E
Sbjct: 188 VIKDSLSIPVFANGNIQYFEDLERCFTATGVDGIMSAEGILTNPALFSGKQVSCWQVAEE 247
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL +V Q+P L RGH+F + H + +L GK+ ++ L ++R I
Sbjct: 248 YLQIVHQFPCTLSSVRGHLFKIWIHGTQRHLDLRNKLATGKS--LEALVAVNTEFKQRTI 305
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPT 482
+ +N LP WICQPY+RP+
Sbjct: 306 -------VRTAEEQTAVANQGK--LPYWICQPYIRPS 333
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 46/64 (71%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
L ++++APMVD SEL WRLL RRYG+ LCYTPM+ + FI D R+E + PEDRP
Sbjct: 8 LQQAKYVVAPMVDQSELAWRLLCRRYGAQLCYTPMLHSAVFIRDATYRRENFKTCPEDRP 67
Query: 136 LIIQ 139
LI+Q
Sbjct: 68 LIVQ 71
>gi|118099689|ref|XP_001232803.1| PREDICTED: tRNA-dihydrouridine synthase 1-like isoform 1 [Gallus
gallus]
Length = 473
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 170/345 (49%), Positives = 233/345 (67%), Gaps = 28/345 (8%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM--STPED 203
L +++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L + PED
Sbjct: 14 LRGAHYVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFLRDANYRRENLYGEACPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VP++CKIR++ +++KTV+YA+MLE+AGCQLL VHGRT +Q+G G+ASWEH
Sbjct: 134 LLANEKLSVPITCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLAGVASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA++IPV ANGNIQCL+DVE C+ +TGV GVM+AEGNL+NPALF G+ WE+A
Sbjct: 194 IQAVRKAVSIPVFANGNIQCLSDVEECIRKTGVHGVMSAEGNLHNPALFEGRNPLVWEMA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT-NHIKDLRKAVDM-LR 441
EYL++V +YP L Y R H+F + HH L + + L KT I D+ + + + +
Sbjct: 254 EEYLEIVQKYPCPLSYVRAHLFKLWHHTLQVYQQLREELAKVKTLEGIVDVNRELKLRCQ 313
Query: 442 ERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQQ 486
E + EG K PY+RP P+++
Sbjct: 314 EEIANQKEGEK------------------------PYIRPGPKER 334
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM--STPED 133
L +++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L + PED
Sbjct: 14 LRGAHYVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFLRDANYRRENLYGEACPED 73
Query: 134 RPLIIQ 139
RPLI+Q
Sbjct: 74 RPLIVQ 79
>gi|320164949|gb|EFW41848.1| tRNA-dihydrouridine synthase 1-like protein [Capsaspora owczarzaki
ATCC 30864]
Length = 563
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 172/342 (50%), Positives = 226/342 (66%), Gaps = 18/342 (5%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L S R ++APMVD SEL WR+LSRRYG+ LCYTPM +A F + R E+ + EDRP
Sbjct: 29 LRSARLVVAPMVDQSELAWRMLSRRYGADLCYTPMFNARLFAESQLYRDEMFSTCAEDRP 88
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
L++QFC ND +L AAKL E CD +D+N+GCPQ +A+RGHYG++L ++W L+ +V
Sbjct: 89 LVVQFCANDPDHLLAAAKLVENDCDAVDLNLGCPQHIARRGHYGSFLMEEWDLIERMVRK 148
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + ++VPV+CKIRI+ V KTV+YA+MLERAGCQLL VHGR +Q+G TGLA W +I
Sbjct: 149 LHENLKVPVTCKIRIFPSVEKTVQYAQMLERAGCQLLTVHGRLREQKGHKTGLADWSYIR 208
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
AVR+A+ IPV ANGNI +VE C+ QTGV GVMTAEGNLYNPALF+GQ P +A E
Sbjct: 209 AVREAVKIPVFANGNILYNENVEECIRQTGVQGVMTAEGNLYNPALFSGQMLPVHRVAKE 268
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDL----RKAVDMLR 441
Y++LV+QYP L Y R H+F + H +LP N +R +G + + L R+ ++ +
Sbjct: 269 YMELVSQYPTPLAYVRAHLFKIFHS--SLPFNIGLRTRLGDVHTPEALDQVARELIEWVE 326
Query: 442 ERFIDYHE-GRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPT 482
+ E G L P P YP WICQP+ R T
Sbjct: 327 SEERKFQESGEALPPAPQYPH-----------WICQPHFRVT 357
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 71 DAW-TQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
D W T L S R ++APMVD SEL WR+LSRRYG+ LCYTPM +A F + R E+ +
Sbjct: 23 DFWRTALRSARLVVAPMVDQSELAWRMLSRRYGADLCYTPMFNARLFAESQLYRDEMFST 82
Query: 130 TPEDRPLIIQ 139
EDRPL++Q
Sbjct: 83 CAEDRPLVVQ 92
>gi|198428499|ref|XP_002130384.1| PREDICTED: similar to dihydrouridine synthase 1-like [Ciona
intestinalis]
Length = 626
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 166/348 (47%), Positives = 237/348 (68%), Gaps = 16/348 (4%)
Query: 140 RTIFPR-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL- 197
R + R L SP+F++APMVD SELPWRLLSRR+G+ LC++PM SA+ F+ D R +++
Sbjct: 5 REFYERVLKSPKFVVAPMVDQSELPWRLLSRRHGAQLCFSPMYSANTFVHDHTYRNKVVQ 64
Query: 198 -MSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
+S+ ED PLI+QFC N ++N EA+KL E C+G+D+N+GCPQ +AKRGH+GAYLQ+DW
Sbjct: 65 DLSSTEDHPLIVQFCSNSAENFLEASKLVEGLCEGVDLNLGCPQHIAKRGHFGAYLQEDW 124
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
L+ ++S+ +Q + + V+ KIR++ +++KTV+YA+MLE AGC ++ VHGRT +Q+G NT
Sbjct: 125 DLIIEIISTTKQHIGIGVTAKIRVFNEIDKTVKYAQMLETAGCDIITVHGRTREQKGPNT 184
Query: 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT 376
GLASW+HI AV+ + IPV ANGNIQ D+ C+ TGV GVM AEGNL NP +F +
Sbjct: 185 GLASWDHIKAVKDNVDIPVFANGNIQYYCDIMRCMETTGVDGVMVAEGNLTNPMIFQDLS 244
Query: 377 RP--AWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLR 434
P +++ EY LVAQYP L AR H+F + L + + D+R +G N+I L+
Sbjct: 245 TPCNVYDVVEEYFALVAQYPCPLSSARSHMFRIWARTLLI--HKDMRERIGSANNIDMLK 302
Query: 435 KAVDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPT 482
+ ++L++R L PM + + SLP W+CQPYVRP
Sbjct: 303 ECNEVLKQRC--------LSEEMESPM-CDMIDRSLPHWVCQPYVRPN 341
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 52/66 (78%), Gaps = 2/66 (3%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL--MSTPED 133
L SP+F++APMVD SELPWRLLSRR+G+ LC++PM SA+ F+ D R +++ +S+ ED
Sbjct: 12 LKSPKFVVAPMVDQSELPWRLLSRRHGAQLCFSPMYSANTFVHDHTYRNKVVQDLSSTED 71
Query: 134 RPLIIQ 139
PLI+Q
Sbjct: 72 HPLIVQ 77
>gi|340373875|ref|XP_003385465.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Amphimedon
queenslandica]
Length = 465
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 169/337 (50%), Positives = 218/337 (64%), Gaps = 6/337 (1%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LGSP+ I+APMVD SEL WRL SR++G+ LCYTPM+ A F K R+E + EDRP
Sbjct: 19 LGSPKLIVAPMVDQSELAWRLFSRQHGAELCYTPMMHASLFRQSPKYRRENFATCAEDRP 78
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LI QFC ND + L EAA+ E CD +DIN+GCPQ +AKRGHYGA+LQD+W L+ +V+
Sbjct: 79 LIAQFCANDPQVLLEAARYVEEDCDAVDINLGCPQTIAKRGHYGAFLQDEWDLIAKMVNL 138
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + VPV+CKIR+++D++KTV YA+MLE AGCQLL VHGRT Q+GM TG+ASWEHI
Sbjct: 139 LHCELSVPVTCKIRVFEDIDKTVRYAKMLESAGCQLLTVHGRTRSQKGMLTGIASWEHIK 198
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
AV++ L+IPV ANGNI+ L DV+ CL +T V GVM+AEGNL+NP LF G+ W E
Sbjct: 199 AVKENLSIPVFANGNIRFLDDVKKCLDETRVEGVMSAEGNLFNPGLFHGEQLACWSAVDE 258
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI 445
YL V YP + RGH+F + HH+L P R + I+ L+ +
Sbjct: 259 YLSWVKLYPPSISIVRGHLFKLWHHVLQTPGYDHFRDKIATAKTIEGFELVSSELKSLLL 318
Query: 446 DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPT 482
+L Y + S+P W CQPYVRP+
Sbjct: 319 SNITEEEL--KSEYSCTIG----SIPYWRCQPYVRPS 349
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 45/64 (70%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LGSP+ I+APMVD SEL WRL SR++G+ LCYTPM+ A F K R+E + EDRP
Sbjct: 19 LGSPKLIVAPMVDQSELAWRLFSRQHGAELCYTPMMHASLFRQSPKYRRENFATCAEDRP 78
Query: 136 LIIQ 139
LI Q
Sbjct: 79 LIAQ 82
>gi|443725322|gb|ELU12971.1| hypothetical protein CAPTEDRAFT_132983, partial [Capitella teleta]
Length = 277
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 157/262 (59%), Positives = 199/262 (75%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L R ++APMVD SEL WR+LSRR+G+ LCYTPM A F+ D R+E L + EDRP
Sbjct: 16 LKKSRLVVAPMVDQSELAWRILSRRHGADLCYTPMFHAPVFVRDASYRREALTTCEEDRP 75
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LI+QFC ND + L +AAK AEPHCD ID+N+GCPQM+AKRGHYGAYLQ++W LL +VS
Sbjct: 76 LIVQFCANDPEILLKAAKYAEPHCDAIDLNLGCPQMIAKRGHYGAYLQEEWDLLERMVSL 135
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+ ++VP++CKIR++ DV+KTV+YA+MLE+AGC+LL VHGRT +Q+G TG+ASW HI
Sbjct: 136 CAKELKVPITCKIRVFDDVDKTVQYAQMLEKAGCKLLTVHGRTREQKGPRTGIASWSHIK 195
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
AVR + IP+ ANGNIQ L DV+ C+ TG GVM+AEGNLYNPAL+ G WE+A E
Sbjct: 196 AVRDNIKIPMFANGNIQYLPDVKRCMEATGAQGVMSAEGNLYNPALYEGINPIVWEIADE 255
Query: 386 YLDLVAQYPVRLQYARGHVFNM 407
YL LV QYP L Y RGH+F++
Sbjct: 256 YLQLVEQYPCPLSYIRGHIFSI 277
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 73 WTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP 131
W Q L R ++APMVD SEL WR+LSRR+G+ LCYTPM A F+ D R+E L +
Sbjct: 12 WRQTLKKSRLVVAPMVDQSELAWRILSRRHGADLCYTPMFHAPVFVRDASYRREALTTCE 71
Query: 132 EDRPLIIQ 139
EDRPLI+Q
Sbjct: 72 EDRPLIVQ 79
>gi|149055089|gb|EDM06906.1| PP3111 protein, isoform CRA_b [Rattus norvegicus]
gi|149055090|gb|EDM06907.1| PP3111 protein, isoform CRA_b [Rattus norvegicus]
Length = 326
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 164/300 (54%), Positives = 214/300 (71%), Gaps = 4/300 (1%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS--TPED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRG YGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G G ASWEH
Sbjct: 134 LLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNI+CL DVE C+ TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYLD+V Q+P L Y R H+F + HH TL + +R + K ++ + L+ R
Sbjct: 254 DEYLDIVRQHPCPLSYVRAHLFKLWHH--TLQVHQQLREELAKVKTLEGVAAVSQALKLR 311
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 73 WTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS-- 129
W++ LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 10 WSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDV 69
Query: 130 TPEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 70 CPEDRPLIVQ 79
>gi|391337706|ref|XP_003743206.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Metaseiulus occidentalis]
Length = 475
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 159/349 (45%), Positives = 228/349 (65%), Gaps = 12/349 (3%)
Query: 141 TIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 200
T F ++GSP++I+APMVDASEL WRLLSR++ + LCYTPM A F+ + R+ +
Sbjct: 15 TFFRQIGSPKYIVAPMVDASELAWRLLSRQHSAQLCYTPMYHAKCFVNSEGYRK-TFATC 73
Query: 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
EDRPLI+QFC ND + ++A L CD +D+N+GCPQ +A GH+GA+LQD+W L+T
Sbjct: 74 AEDRPLIVQFCANDPEVFSQACGLVADRCDAVDLNLGCPQAIASAGHFGAFLQDEWELIT 133
Query: 261 NLVSSLRQA-VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA 319
+++S R+ +P++ KIR+++D+ KTVEYA++L AG +L VHGRT D +G TG+A
Sbjct: 134 SMISRARRDHPNLPITAKIRVFKDIRKTVEYAKILVEAGVSILTVHGRTRDMKGRLTGVA 193
Query: 320 SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPA 379
SW+HI AV++++ +P+ ANGNI+ D++ CL +TG GVMTAEGNLYNP+LFTG+ P
Sbjct: 194 SWDHIKAVKESVPVPIFANGNIRYFEDIQKCLQETGADGVMTAEGNLYNPSLFTGRNPPV 253
Query: 380 WELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDM 439
++A EYLDLV + P + Y RGH+F + H + L EN DVR + I D
Sbjct: 254 VDVAQEYLDLVIKNPCPVSYIRGHLFKLFHEAIHLAENRDVRERLASAKSIDDFLTVNKD 313
Query: 440 LRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPP---WICQPYVRPTPEQ 485
+RER R+ P ++ + P + CQPY+RP PE+
Sbjct: 314 MRERLKKASSARR-------PFTAWELKCGVKPIPIYRCQPYLRPDPEE 355
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 49/67 (73%), Gaps = 1/67 (1%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
+ Q+GSP++I+APMVDASEL WRLLSR++ + LCYTPM A F+ + R+ + E
Sbjct: 17 FRQIGSPKYIVAPMVDASELAWRLLSRQHSAQLCYTPMYHAKCFVNSEGYRK-TFATCAE 75
Query: 133 DRPLIIQ 139
DRPLI+Q
Sbjct: 76 DRPLIVQ 82
>gi|326930780|ref|XP_003211519.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine synthase
1-like, partial [Meleagris gallopavo]
Length = 487
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 168/353 (47%), Positives = 228/353 (64%), Gaps = 25/353 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L +++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R L +
Sbjct: 11 LRGAHYVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFLRDANYR---LRGKKNNYC 67
Query: 206 LII------------QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 253
L+I QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ
Sbjct: 68 LLILLVXFCSSLSPSQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQ 127
Query: 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313
++W LL ++ + + VP++CKIR++ +++KTV+YA+MLE+AGCQLL VHGRT +Q+G
Sbjct: 128 EEWDLLQRMILLANEKLSVPITCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKG 187
Query: 314 MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
G+ASWEHI AVRKA++IPV ANGNIQCL+DVE C+ +TGV GVM+AEGNL+NPALF
Sbjct: 188 PLAGVASWEHIQAVRKAVSIPVFANGNIQCLSDVEECIRKTGVHGVMSAEGNLHNPALFE 247
Query: 374 GQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDL 433
G+ WE+A EYL++V +YP L Y R H+F + HH L + + L + +K L
Sbjct: 248 GRNPLVWEMAEEYLEIVQKYPCPLSYVRAHLFKLWHHTLQVYQQ-----LREELAKVKTL 302
Query: 434 RKAVDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQQ 486
VD+ RE + E N WICQPY+RP P+++
Sbjct: 303 EGIVDVNRELKLRCQE-----EIANQKEGEKPKXGCFFHWICQPYIRPGPKER 350
>gi|256088793|ref|XP_002580509.1| tRNA-dihydrouridine synthase [Schistosoma mansoni]
gi|238666091|emb|CAZ36748.1| tRNA-dihydrouridine synthase, putative [Schistosoma mansoni]
Length = 441
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 156/335 (46%), Positives = 217/335 (64%), Gaps = 15/335 (4%)
Query: 147 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 206
SP+++LAPMVD SEL WR+L R+YG L +TPM+++ F+ + K R+ L EDRPL
Sbjct: 8 NSPKYVLAPMVDGSELAWRMLGRKYGVQLTFTPMINSTAFLINMKYRRSCLQFASEDRPL 67
Query: 207 IIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSL 266
I+QFC N AKL +P CD +D+N+GCPQ +AKRGHYGA+LQD+W L ++S
Sbjct: 68 IVQFCANSPDTFVRCAKLVQPFCDAVDLNLGCPQGIAKRGHYGAFLQDEWNSLKEIISRA 127
Query: 267 RQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
+ VPV+CKIRI+ DV +TV+YA++LE AG +L VHGRT + +G TGLA W I A
Sbjct: 128 SLELNVPVTCKIRIFSDVERTVQYAKLLEAAGASMLTVHGRTREMKGQKTGLADWNQIRA 187
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEY 386
V++A+ IPVIANGNIQ L+DV CL T VM+AEG+L+NPALF G +++ EY
Sbjct: 188 VKEAVKIPVIANGNIQYLSDVHQCLDSTKADAVMSAEGHLHNPALFLGIQPCIYDMCFEY 247
Query: 387 LDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFID 446
LDLV +YP +Q RGH+F +CHH L E+S+ R L+G + K +++ +
Sbjct: 248 LDLVEKYPTSMQIIRGHIFKLCHH--ALDEHSEYRSLIGTSQSTKGIKEIL--------- 296
Query: 447 YHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRP 481
+K+ + + ++ L P W+CQPY RP
Sbjct: 297 ----QKMANQCSSCVQNSSSELPHPHWLCQPYERP 327
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 71 DAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
D+W SP+++LAPMVD SEL WR+L R+YG L +TPM+++ F+ + K R+ L
Sbjct: 5 DSWN---SPKYVLAPMVDGSELAWRMLGRKYGVQLTFTPMINSTAFLINMKYRRSCLQFA 61
Query: 131 PEDRPLIIQ 139
EDRPLI+Q
Sbjct: 62 SEDRPLIVQ 70
>gi|47216250|emb|CAG05946.1| unnamed protein product [Tetraodon nigroviridis]
Length = 505
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 170/369 (46%), Positives = 228/369 (61%), Gaps = 49/369 (13%)
Query: 156 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PEDRPLIIQFCGN 213
MVD SEL WRLLSRR+G+ LCYTPM A F+ D R++ L + EDRPLI QFC N
Sbjct: 1 MVDQSELAWRLLSRRHGAQLCYTPMFHAQVFVRDANYRRDNLYNEVCEEDRPLITQFCAN 60
Query: 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL----------- 262
D + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL +
Sbjct: 61 DPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWGLLEKMGKLDFMSGFWK 120
Query: 263 -------------------------VSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERA 297
V + + VP++CKIR+++++ KTV YA+MLE+A
Sbjct: 121 NTHSEFIRGIPLFFPSHALLFAWFPVRLASEKLSVPITCKIRVFKEMEKTVRYAQMLEKA 180
Query: 298 GCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVA 357
GCQLL VHGRT +Q+G TG+ASWEHI AVR+A+ IPV ANGNIQ L+DV CL +TGV
Sbjct: 181 GCQLLTVHGRTKEQKGAMTGVASWEHIRAVRQAVNIPVFANGNIQHLSDVTRCLQETGVQ 240
Query: 358 GVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQY-PVRLQYARGHVFNMCHHLLTLPE 416
GVM+AEGNL+NPALF G++ P WE+A EYL++V ++ P L Y R H+F + HH L +
Sbjct: 241 GVMSAEGNLHNPALFEGRSPPVWEMAEEYLEVVRKHPPCSLSYVRAHLFKLWHHTLQI-- 298
Query: 417 NSDVRLLVGKTNHIKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQ 476
+ D+R + K + L L++R + + + +L P WICQ
Sbjct: 299 HQDLREDLAKVKTLDGLADVSKQLKQRCQE--------EIASGADAEKSGDLPFPHWICQ 350
Query: 477 PYVRPTPEQ 485
PYVRP P++
Sbjct: 351 PYVRPLPKE 359
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 86 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PEDRPLIIQ 139
MVD SEL WRLLSRR+G+ LCYTPM A F+ D R++ L + EDRPLI Q
Sbjct: 1 MVDQSELAWRLLSRRHGAQLCYTPMFHAQVFVRDANYRRDNLYNEVCEEDRPLITQ 56
>gi|109119167|ref|XP_001113015.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Macaca mulatta]
Length = 476
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 171/346 (49%), Positives = 222/346 (64%), Gaps = 18/346 (5%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR-TVDQRGMNTGLASWE 322
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGR + G L W
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRWSQGCPGPGGVLGRWR 193
Query: 323 H--ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW 380
+ RKA+ IPV ANGNIQCL DVE CL TGV GVM+AEGNL+NPALF G++ W
Sbjct: 194 DRCFSVNRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVW 253
Query: 381 ELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT-NHIKDLRKAVDM 439
ELA EYLD+V ++P L Y R H+F + HH L + + L KT I + + + +
Sbjct: 254 ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVYQQLREELAKVKTLEGIAAVSQELKL 313
Query: 440 LRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
+ I EG K P + P WICQPY+RP P +
Sbjct: 314 RCQEEISRQEGAK--PTGDLPFH----------WICQPYIRPGPRE 347
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+ W++ L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 8 EFWSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYC 67
Query: 130 T--PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 68 EVCPEDRPLIVQ 79
>gi|156364501|ref|XP_001626386.1| predicted protein [Nematostella vectensis]
gi|156213260|gb|EDO34286.1| predicted protein [Nematostella vectensis]
Length = 288
Score = 325 bits (832), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 149/264 (56%), Positives = 187/264 (70%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L S R+++APMVD SEL WR+LSRRYG+ LCYTPM A FI D R E++ + DRP
Sbjct: 23 LKSARYVVAPMVDQSELAWRMLSRRYGAELCYTPMFHAGMFIRDPIYRSEMMQTCVGDRP 82
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LI+QFC ND + +AA L E CDG+D+N+GCPQ +AKRGHYGA+LQD+W LL +V
Sbjct: 83 LIVQFCANDPEVFVQAALLVESECDGVDLNLGCPQHIAKRGHYGAFLQDEWELLEKMVKL 142
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+ + VP++CKIR++ DV KT+ YA+MLE AGCQLL VHGRT +Q+ TGLA W+ I
Sbjct: 143 AHEKLSVPITCKIRVFDDVQKTIAYAKMLESAGCQLLTVHGRTREQKRELTGLADWDQIK 202
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
AVR+ L IPV ANGNIQ L+DV CL TG GVMTAEGNL NPALFTG W +A+E
Sbjct: 203 AVRENLNIPVFANGNIQYLSDVTRCLEYTGCNGVMTAEGNLSNPALFTGSQPYVWSMANE 262
Query: 386 YLDLVAQYPVRLQYARGHVFNMCH 409
YL+L ++ L R H+F + H
Sbjct: 263 YLELATKHKASLSAVRAHLFRLWH 286
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Query: 71 DAW-TQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
D W L S R+++APMVD SEL WR+LSRRYG+ LCYTPM A FI D R E++ +
Sbjct: 17 DFWRNTLKSARYVVAPMVDQSELAWRMLSRRYGAELCYTPMFHAGMFIRDPIYRSEMMQT 76
Query: 130 TPEDRPLIIQ 139
DRPLI+Q
Sbjct: 77 CVGDRPLIVQ 86
>gi|358335819|dbj|GAA54426.1| tRNA-dihydrouridine synthase 1 [Clonorchis sinensis]
Length = 1529
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 148/305 (48%), Positives = 206/305 (67%), Gaps = 2/305 (0%)
Query: 138 IQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL 197
++ + +LGSP+++LAPMVDASEL WRLL+RRYG+ L YTPM+ A F+ DK RQ L
Sbjct: 823 VKEDLLTQLGSPKYVLAPMVDASELAWRLLARRYGAQLTYTPMIHAMMFLKDKVYRQSCL 882
Query: 198 MSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
+PEDRPLI+QFC N + +AA+ +P+CD +DIN+GCPQ +AK GHYGA+LQD+W
Sbjct: 883 QFSPEDRPLIVQFCANSPETFVKAARTIQPYCDAVDINLGCPQKIAKHGHYGAFLQDEWN 942
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
L+ ++V+ + +PV+CKIRI+ DV +TV YA+MLE AG LL VHGRT + +G TG
Sbjct: 943 LIRSIVNRAVSELDIPVTCKIRIFPDVERTVSYAKMLEAAGASLLVVHGRTREMKGQLTG 1002
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
LA W I V+ LTIPVI+NGNIQ D+ CL+ T VM+AEG+L+NPA+F G
Sbjct: 1003 LADWNQIKRVKAELTIPVISNGNIQYPDDIARCLSITNADAVMSAEGHLHNPAIFAGLQP 1062
Query: 378 PAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAV 437
+ + EYLD+V YP + RGH+F + HH L + + R VG +++++ V
Sbjct: 1063 SVYSMCMEYLDIVKLYPTTMPIVRGHIFKLLHHALVV--HPHFRQTVGCAQNLEEMLSVV 1120
Query: 438 DMLRE 442
+R+
Sbjct: 1121 QEMRD 1125
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 56/75 (74%)
Query: 65 SSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ 124
S + D TQLGSP+++LAPMVDASEL WRLL+RRYG+ L YTPM+ A F+ DK RQ
Sbjct: 820 SMGVKEDLLTQLGSPKYVLAPMVDASELAWRLLARRYGAQLTYTPMIHAMMFLKDKVYRQ 879
Query: 125 EILMSTPEDRPLIIQ 139
L +PEDRPLI+Q
Sbjct: 880 SCLQFSPEDRPLIVQ 894
>gi|313237639|emb|CBY12783.1| unnamed protein product [Oikopleura dioica]
Length = 460
Score = 322 bits (824), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 156/348 (44%), Positives = 214/348 (61%), Gaps = 27/348 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE-------ILM 198
L SP+F++APMVDASELPWR+LSRRY + LCYTPM A +I D R+E +
Sbjct: 37 LKSPKFVVAPMVDASELPWRVLSRRYSAELCYTPMFHAANYIKDATYRRENFPDTGDLEQ 96
Query: 199 STPE-DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
+PE DRPL +QFC ND + AAK+ E CD +D+N+GCPQM+AKRGHYGA++ +DW
Sbjct: 97 GSPEFDRPLFVQFCANDINAFSTAAKMVEDRCDAVDLNLGCPQMIAKRGHYGAHMMEDWS 156
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
+ ++ R+ +V ++ KIR ++D + T+ YA+MLE AG LL +HGRT DQRG NTG
Sbjct: 157 NIRKMIEEARKVAKVRITAKIRKFEDESITLRYAKMLENAGVSLLTIHGRTRDQRGPNTG 216
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
LA W+ I V++AL +PV+ANGNIQCL + C+ QTGV G+MTAEGNLYNPALF
Sbjct: 217 LADWQIIKKVKEALRVPVVANGNIQCLQNAIDCMEQTGVDGIMTAEGNLYNPALF----- 271
Query: 378 PAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAV 437
+ + + P L RGHVF + HH+ E D+R ++ + N ++ +
Sbjct: 272 --------FWNFTSSLPA-LSCIRGHVFKILHHVFQQEEYRDMRDMLAQANDFDEIGRVA 322
Query: 438 DMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
+ + R + E + P L LP W C+PYVRP P +
Sbjct: 323 EEAKRRLENLDENNEYTSP-----QIMDDLLMLPYWRCKPYVRPKPSE 365
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 52/81 (64%), Gaps = 12/81 (14%)
Query: 71 DAWTQ----LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE- 125
D W+ L SP+F++APMVDASELPWR+LSRRY + LCYTPM A +I D R+E
Sbjct: 28 DTWSWFRDVLKSPKFVVAPMVDASELPWRVLSRRYSAELCYTPMFHAANYIKDATYRREN 87
Query: 126 ------ILMSTPE-DRPLIIQ 139
+ +PE DRPL +Q
Sbjct: 88 FPDTGDLEQGSPEFDRPLFVQ 108
>gi|402222464|gb|EJU02530.1| Dus-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 450
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 168/364 (46%), Positives = 226/364 (62%), Gaps = 37/364 (10%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI---ADKKLRQEIL----- 197
LGSP+F++APMVD SEL WR+LSR+YG+ L YTPM+SA F A K R+++
Sbjct: 28 LGSPKFVVAPMVDQSELAWRILSRKYGAQLVYTPMISAKTFAVPHAGDKFRKKVFDMIHG 87
Query: 198 -MSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
EDRPLI+QFC ND + L AA++ EP CD +DIN+GCPQ +A++G YG++LQDDW
Sbjct: 88 EEGGAEDRPLIVQFCANDPEALLAAAQIVEPFCDAVDINLGCPQDIARKGRYGSFLQDDW 147
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
L+ +L++ L + +++PV+ K R+ V +TV YA+M+ERAG Q+L HGRT DQRG N+
Sbjct: 148 DLVYSLINILHENLRIPVTAKFRVLPSVERTVAYAQMMERAGAQILTCHGRTRDQRGHNS 207
Query: 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT 376
GLA W I AV++A+++PV ANGN+ DVE CL TG GVM+AEGNLYNPALF +T
Sbjct: 208 GLADWAQIAAVKRAVSVPVFANGNVLYWEDVERCLEATGADGVMSAEGNLYNPALFA-RT 266
Query: 377 RPA-WELASEYLDLVAQYPVRL--QYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDL 433
PA W LA EYL++V Q R +GHVF + L N D+R +G + +L
Sbjct: 267 NPAHWTLALEYLEIVKQLKTRTPPSAIKGHVFKLLRP--ALEGNKDLRNKIGAISGRGEL 324
Query: 434 RKAV----DMLRE----------RFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYV 479
V D++RE D EG K+ P + H +P W+ QPY
Sbjct: 325 EDVVKEYEDVVREFGERMERDAGAAGDAEEG-KIGP----LLDGKRH---IPHWLAQPYF 376
Query: 480 RPTP 483
RP P
Sbjct: 377 RPGP 380
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 9/73 (12%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI---ADKKLRQEIL----- 127
LGSP+F++APMVD SEL WR+LSR+YG+ L YTPM+SA F A K R+++
Sbjct: 28 LGSPKFVVAPMVDQSELAWRILSRKYGAQLVYTPMISAKTFAVPHAGDKFRKKVFDMIHG 87
Query: 128 -MSTPEDRPLIIQ 139
EDRPLI+Q
Sbjct: 88 EEGGAEDRPLIVQ 100
>gi|119610150|gb|EAW89744.1| dihydrouridine synthase 1-like (S. cerevisiae), isoform CRA_b [Homo
sapiens]
Length = 378
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 156/300 (52%), Positives = 202/300 (67%), Gaps = 21/300 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKR V
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKR-----------------V 116
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 117 LLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEH 176
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE CL TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 177 IKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 236
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYLD+V ++P L Y R H+F + HH TL + ++R + K ++ + L+ R
Sbjct: 237 EEYLDIVREHPCPLSYVRAHLFKLWHH--TLQVHQELREELAKVKTLEGIAAVSQELKLR 294
Score = 79.0 bits (193), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 49/70 (70%), Gaps = 3/70 (4%)
Query: 73 WTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST- 130
W++ L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 10 WSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEV 69
Query: 131 -PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 70 CPEDRPLIVQ 79
>gi|384499529|gb|EIE90020.1| hypothetical protein RO3G_14731 [Rhizopus delemar RA 99-880]
Length = 392
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 156/346 (45%), Positives = 220/346 (63%), Gaps = 7/346 (2%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L SP+ ILAPMVD SEL +R+L R+YG+ +C TPM A F +K R + + EDRP
Sbjct: 16 LKSPKTILAPMVDQSELAYRILCRKYGADVCVTPMFHARLFSEGQKYRDDQFTTNKEDRP 75
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LI+QFC ND L +AA+ E CD +D+N+GCPQ +AKRG YG++LQD+W L+ +VS+
Sbjct: 76 LIVQFCANDPDILLKAARFVENDCDAVDLNLGCPQNIAKRGRYGSFLQDEWELIEKMVST 135
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + + +PV+ KIR + V KT+EYA+M+E AG Q+L VHGR +QRG +TGLA W+ I
Sbjct: 136 LHRELAIPVTVKIRCFPTVEKTIEYAKMIEAAGAQMLTVHGRLREQRGHHTGLADWDKIK 195
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF-TGQTRP--AWEL 382
AV++AL IPV+ANGNI D++ C+ TGV VMTAEG+LYNPA+F +G+T P +++
Sbjct: 196 AVKQALKIPVVANGNILYHEDIQRCIEYTGVDAVMTAEGSLYNPAIFSSGRTLPPFTYQV 255
Query: 383 ASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRE 442
A EYLD+ Q +GH+F + H +LP ++D+R +G+ + + V L+E
Sbjct: 256 AEEYLDICKQEKTNPGMIKGHMFKLLHP--SLPVHTDLRARLGRARELDEFYSIVRELKE 313
Query: 443 RFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPT-PEQQE 487
R E K P + W CQPY+RP P++ E
Sbjct: 314 RVTKEIE-EKGESPDEQGQPDENGIRKYAYWRCQPYIRPALPKKDE 358
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 112/229 (48%), Gaps = 35/229 (15%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
L SP+ ILAPMVD SEL +R+L R+YG+ +C TPM A F +K R + + EDRP
Sbjct: 16 LKSPKTILAPMVDQSELAYRILCRKYGADVCVTPMFHARLFSEGQKYRDDQFTTNKEDRP 75
Query: 136 LIIQRTIFP---RLGSPRFILAPMVDASEL----PWRLLSR-RYGSHLCYTPMVSAHQFI 187
LI+Q L + RF+ DA +L P + R RYGS F+
Sbjct: 76 LIVQFCANDPDILLKAARFVEND-CDAVDLNLGCPQNIAKRGRYGS------------FL 122
Query: 188 ADKKLRQEILMSTPEDR---PLIIQF-CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVA 243
D+ E ++ST P+ ++ C + E AK+ E G + ++
Sbjct: 123 QDEWELIEKMVSTLHRELAIPVTVKIRCFPTVEKTIEYAKMIE--AAGAQMLTVHGRLRE 180
Query: 244 KRGHYGAYLQDDWPLLTNLVSSLRQAVQVPV--SCKIRIYQDVNKTVEY 290
+RGH+ DW + + +++QA+++PV + I ++D+ + +EY
Sbjct: 181 QRGHHTGLA--DW----DKIKAVKQALKIPVVANGNILYHEDIQRCIEY 223
>gi|393908938|gb|EJD75253.1| hypothetical protein, variant [Loa loa]
Length = 421
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 152/340 (44%), Positives = 212/340 (62%), Gaps = 2/340 (0%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
R+ R ++APMVD SEL +R++ R++G+HLC++PM+ A FI D R+ L ++ +DR
Sbjct: 40 RIRGIRCVVAPMVDQSELAFRMMLRKHGAHLCFSPMIHAQLFITDATYRRTALSTSLDDR 99
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PLI+QFC ND L A +L E CDG+D+N+GCPQ++AKRGHYGAYLQ+D L+ +V+
Sbjct: 100 PLIVQFCANDPVTLLTACQLVESFCDGVDLNLGCPQLIAKRGHYGAYLQEDQKLICEMVA 159
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
L +Q+P+SCKIRI Q++N+T+ YA L +AG +L VHGRT +QRG NTGLA W +
Sbjct: 160 LLHSRLQLPLSCKIRILQNINETIAYAVALVKAGACMLTVHGRTREQRGPNTGLADWYAM 219
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELAS 384
AV A+ +PV+ANGNIQ DV+ CL TG + +M+AEG L NP LF + W A
Sbjct: 220 RAVVNAVDVPVLANGNIQLPGDVDRCLEITGASAIMSAEGILSNPYLFEKRHEVNWTAAR 279
Query: 385 EYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
EYLD +Y + R H+F +CHH +L E SD+R + +K + VD L ER
Sbjct: 280 EYLDFAERYESTISAVRAHLFRICHH--SLLEYSDLRERLSYVCSMKGFHQIVDDLEERV 337
Query: 445 IDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPE 484
L ++ +P WIC+PY RP +
Sbjct: 338 FQSVSSSGLEFSEIKSIALVTSPALMPHWICKPYYRPVRD 377
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 45/60 (75%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
R ++APMVD SEL +R++ R++G+HLC++PM+ A FI D R+ L ++ +DRPLI+Q
Sbjct: 45 RCVVAPMVDQSELAFRMMLRKHGAHLCFSPMIHAQLFITDATYRRTALSTSLDDRPLIVQ 104
>gi|312075878|ref|XP_003140612.1| hypothetical protein LOAG_05027 [Loa loa]
Length = 463
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 152/340 (44%), Positives = 212/340 (62%), Gaps = 2/340 (0%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
R+ R ++APMVD SEL +R++ R++G+HLC++PM+ A FI D R+ L ++ +DR
Sbjct: 40 RIRGIRCVVAPMVDQSELAFRMMLRKHGAHLCFSPMIHAQLFITDATYRRTALSTSLDDR 99
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PLI+QFC ND L A +L E CDG+D+N+GCPQ++AKRGHYGAYLQ+D L+ +V+
Sbjct: 100 PLIVQFCANDPVTLLTACQLVESFCDGVDLNLGCPQLIAKRGHYGAYLQEDQKLICEMVA 159
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
L +Q+P+SCKIRI Q++N+T+ YA L +AG +L VHGRT +QRG NTGLA W +
Sbjct: 160 LLHSRLQLPLSCKIRILQNINETIAYAVALVKAGACMLTVHGRTREQRGPNTGLADWYAM 219
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELAS 384
AV A+ +PV+ANGNIQ DV+ CL TG + +M+AEG L NP LF + W A
Sbjct: 220 RAVVNAVDVPVLANGNIQLPGDVDRCLEITGASAIMSAEGILSNPYLFEKRHEVNWTAAR 279
Query: 385 EYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
EYLD +Y + R H+F +CHH +L E SD+R + +K + VD L ER
Sbjct: 280 EYLDFAERYESTISAVRAHLFRICHH--SLLEYSDLRERLSYVCSMKGFHQIVDDLEERV 337
Query: 445 IDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPE 484
L ++ +P WIC+PY RP +
Sbjct: 338 FQSVSSSGLEFSEIKSIALVTSPALMPHWICKPYYRPVRD 377
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 45/60 (75%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
R ++APMVD SEL +R++ R++G+HLC++PM+ A FI D R+ L ++ +DRPLI+Q
Sbjct: 45 RCVVAPMVDQSELAFRMMLRKHGAHLCFSPMIHAQLFITDATYRRTALSTSLDDRPLIVQ 104
>gi|393908937|gb|EFO23454.2| hypothetical protein LOAG_05027 [Loa loa]
Length = 497
Score = 311 bits (796), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 152/340 (44%), Positives = 212/340 (62%), Gaps = 2/340 (0%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
R+ R ++APMVD SEL +R++ R++G+HLC++PM+ A FI D R+ L ++ +DR
Sbjct: 40 RIRGIRCVVAPMVDQSELAFRMMLRKHGAHLCFSPMIHAQLFITDATYRRTALSTSLDDR 99
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PLI+QFC ND L A +L E CDG+D+N+GCPQ++AKRGHYGAYLQ+D L+ +V+
Sbjct: 100 PLIVQFCANDPVTLLTACQLVESFCDGVDLNLGCPQLIAKRGHYGAYLQEDQKLICEMVA 159
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
L +Q+P+SCKIRI Q++N+T+ YA L +AG +L VHGRT +QRG NTGLA W +
Sbjct: 160 LLHSRLQLPLSCKIRILQNINETIAYAVALVKAGACMLTVHGRTREQRGPNTGLADWYAM 219
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELAS 384
AV A+ +PV+ANGNIQ DV+ CL TG + +M+AEG L NP LF + W A
Sbjct: 220 RAVVNAVDVPVLANGNIQLPGDVDRCLEITGASAIMSAEGILSNPYLFEKRHEVNWTAAR 279
Query: 385 EYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
EYLD +Y + R H+F +CHH +L E SD+R + +K + VD L ER
Sbjct: 280 EYLDFAERYESTISAVRAHLFRICHH--SLLEYSDLRERLSYVCSMKGFHQIVDDLEERV 337
Query: 445 IDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPE 484
L ++ +P WIC+PY RP +
Sbjct: 338 FQSVSSSGLEFSEIKSIALVTSPALMPHWICKPYYRPVRD 377
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 45/60 (75%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
R ++APMVD SEL +R++ R++G+HLC++PM+ A FI D R+ L ++ +DRPLI+Q
Sbjct: 45 RCVVAPMVDQSELAFRMMLRKHGAHLCFSPMIHAQLFITDATYRRTALSTSLDDRPLIVQ 104
>gi|324509339|gb|ADY43931.1| tRNA-dihydrouridine synthase 1-like protein [Ascaris suum]
Length = 503
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 154/342 (45%), Positives = 215/342 (62%), Gaps = 7/342 (2%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
+L + R ++APMVD SEL +R++ R++G+ LC++PM+ A F+ D R+ L S P DR
Sbjct: 48 KLQNMRCVVAPMVDQSELAFRMMMRQHGADLCFSPMIHAQLFVKDLTYRRSALSSCPSDR 107
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PLI+QFC N+ L A L E CDG+D+N+GCPQ++AKRGHYGAYL++D L+ +VS
Sbjct: 108 PLIVQFCANEPHMLLTACLLVEDICDGVDLNLGCPQLIAKRGHYGAYLEEDLDLVCEMVS 167
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
+ +VP+SCKIRI ++ KTV YAR LE+AG +L VHGRT QRG +TGLA W I
Sbjct: 168 LVHSHCRVPLSCKIRILDEIGKTVNYARALEKAGACMLTVHGRTRQQRGASTGLADWNAI 227
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELAS 384
V++A++IP++ANG+IQ DVE CL TG VM+AEG L NP LF G+ P W +A
Sbjct: 228 RIVKRAISIPLLANGSIQMPDDVERCLKMTGANAVMSAEGVLSNPLLFEGRHEPNWVVAR 287
Query: 385 EYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
EYL QY + R H+F +CHH +L E SD+R + ++ + ++ + +R
Sbjct: 288 EYLQYALQYKAGVSSIRAHLFRICHH--SLLEYSDLREKMSYVCTQREFHEILNEIEDRV 345
Query: 445 IDYHEGRKLWP-PPNYPMSSNHHNLSLPP----WICQPYVRP 481
D + L P N+ +S PP WIC+PY RP
Sbjct: 346 NDVLNMKDLDPHSDNFGLSKTRACAPCPPYLPHWICKPYFRP 387
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 68 ARSDAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEI 126
A+ W Q L + R ++APMVD SEL +R++ R++G+ LC++PM+ A F+ D R+
Sbjct: 40 AKKLRWKQKLQNMRCVVAPMVDQSELAFRMMMRQHGADLCFSPMIHAQLFVKDLTYRRSA 99
Query: 127 LMSTPEDRPLIIQ 139
L S P DRPLI+Q
Sbjct: 100 LSSCPSDRPLIVQ 112
>gi|45946028|gb|AAH17081.4| DUS1L protein [Homo sapiens]
Length = 406
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 151/288 (52%), Positives = 197/288 (68%), Gaps = 17/288 (5%)
Query: 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
PEDRPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL
Sbjct: 4 PEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQ 63
Query: 261 NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320
++ + + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G AS
Sbjct: 64 RMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAAS 123
Query: 321 WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW 380
WEHI AVRKA+ IPV ANGNIQCL DVE CL TGV GVM+AEGNL+NPALF G++ W
Sbjct: 124 WEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVW 183
Query: 381 ELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDML 440
ELA EYLD+V ++P L Y R H+F + HH TL + ++R + K ++ + L
Sbjct: 184 ELAEEYLDIVREHPCPLSYVRAHLFKLWHH--TLQVHQELREELAKVKTLEGIAAVSQEL 241
Query: 441 RERF---IDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
+ R I EG K P + P WICQPY+RP P +
Sbjct: 242 KLRCQEEISRQEGAK--PTGDLPFH----------WICQPYIRPGPRE 277
>gi|326433345|gb|EGD78915.1| hypothetical protein PTSG_01890 [Salpingoeca sp. ATCC 50818]
Length = 459
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 153/348 (43%), Positives = 217/348 (62%), Gaps = 15/348 (4%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L SP+ I+APMVD SEL WRLL+R YG+HLCYTPM+ + F+ D R+ + EDRP
Sbjct: 15 LKSPKHIVAPMVDQSELSWRLLARAYGAHLCYTPMLHSGVFVRDANYRKLNFTTCAEDRP 74
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LI+QFCGND + EAAK E CD +D+N+GCPQ +A+RG YGA+LQD+W ++ +V
Sbjct: 75 LIVQFCGNDPDTVLEAAKYVEDKCDAVDLNLGCPQNIARRGRYGAFLQDEWDTISAIVKR 134
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + VPV+CKIRI+ D++KT+ YARMLE +GCQLL VHGRT Q+G +GLA+W++I
Sbjct: 135 LHAELSVPVTCKIRIFDDLDKTLAYARMLEESGCQLLTVHGRTRVQKGPRSGLANWDYIK 194
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
A++ A++IPV+ANGNI +D++ C+ TGV GVM++E +L NPA+F+GQ WE+ E
Sbjct: 195 AIKNAVSIPVVANGNILYTSDIDKCIEYTGVDGVMSSETHLVNPAVFSGQYPLLWEMVDE 254
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRE--- 442
Y+ L ++ + + H+F + H + + D+R + K DL L E
Sbjct: 255 YMGLALKHGESVACCKAHLFKLYHKCVN--DYPDLRTDLAKARSHDDLLAVAAALNENLR 312
Query: 443 RFIDYHEGRKLWPPPNYPMSSNHHNL----------SLPPWICQPYVR 480
R D + LW + ++ H L +P W CQP R
Sbjct: 313 RRRDEEMKQGLWTEEHDTETAALHALPSCSPDFEHPRIPVWRCQPRPR 360
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 46/64 (71%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
L SP+ I+APMVD SEL WRLL+R YG+HLCYTPM+ + F+ D R+ + EDRP
Sbjct: 15 LKSPKHIVAPMVDQSELSWRLLARAYGAHLCYTPMLHSGVFVRDANYRKLNFTTCAEDRP 74
Query: 136 LIIQ 139
LI+Q
Sbjct: 75 LIVQ 78
>gi|328767911|gb|EGF77959.1| hypothetical protein BATDEDRAFT_13578 [Batrachochytrium
dendrobatidis JAM81]
Length = 296
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 144/277 (51%), Positives = 194/277 (70%), Gaps = 13/277 (4%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LGS ++++APMVD SE WR+LSRRYG+ LCYTPM A F K R+++ + DRP
Sbjct: 18 LGSSKYVVAPMVDQSEYAWRILSRRYGAQLCYTPMFHAKLFSEHHKYRKQVFSTGEFDRP 77
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LI+QFC ND + L AAKL E CD ID+N+GCPQ +AK+GHYG++LQD+W L+ ++V +
Sbjct: 78 LIVQFCANDPETLLSAAKLVEAQCDAIDLNLGCPQGIAKKGHYGSFLQDEWDLIASMVKA 137
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+ + + VP++CKIRI+ DV KT+EYA ML+ AGCQLL VHGR +Q+G TGLA W+ I
Sbjct: 138 VHEHISVPITCKIRIFPDVKKTIEYALMLQNAGCQLLTVHGRLREQKGQLTGLADWDQIR 197
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
V++AL+IPV ANGNI DVE C+ +TGV GVMTAEGNLYNPA+F+G+ A ++A E
Sbjct: 198 QVKEALSIPVFANGNILYHDDVERCIKETGVDGVMTAEGNLYNPAIFSGKHLDACDVAQE 257
Query: 386 -----------YLDLVAQYP--VRLQYARGHVFNMCH 409
YL++ +YP + A+ H+F M H
Sbjct: 258 VFECIMQIQPMYLNICKEYPGSSDVGSAKPHLFKMLH 294
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LGS ++++APMVD SE WR+LSRRYG+ LCYTPM A F K R+++ + DRP
Sbjct: 18 LGSSKYVVAPMVDQSEYAWRILSRRYGAQLCYTPMFHAKLFSEHHKYRKQVFSTGEFDRP 77
Query: 136 LIIQ 139
LI+Q
Sbjct: 78 LIVQ 81
>gi|170592763|ref|XP_001901134.1| PP3111 protein [Brugia malayi]
gi|158591201|gb|EDP29814.1| PP3111 protein, putative [Brugia malayi]
Length = 513
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 150/337 (44%), Positives = 210/337 (62%), Gaps = 2/337 (0%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
R+ R+++APMVD SEL +R++ R++G+HLC++PM+ A F+ D R+ L + +DR
Sbjct: 56 RIKGIRYVVAPMVDQSELAFRMMLRKHGAHLCFSPMIHAQLFVTDATYRRTALSTCLDDR 115
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PL++QFC ND L A +L E CDG+D+N+GCPQ++AKRGHYGAYLQ+D L+ +++
Sbjct: 116 PLVVQFCANDPVILLNACQLVESFCDGVDLNLGCPQLIAKRGHYGAYLQEDLKLICEMIT 175
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
L ++P+SCKIRI QD+N+TV YAR L +AG +L VHGRT +QRG NTGLA W +
Sbjct: 176 LLHSHSRLPLSCKIRILQDINETVAYARALVKAGACMLTVHGRTREQRGPNTGLADWYAM 235
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELAS 384
AV A+ +PV+ANGNIQ DV+ CL TG + +M+AEG L NP LF + W A
Sbjct: 236 RAVVSAVDVPVLANGNIQLPGDVDRCLEITGASAIMSAEGILSNPYLFEKRHEVNWTAAR 295
Query: 385 EYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
EYLD +Y R H+F +CHH +L E SD+R + +D R+ +D L R
Sbjct: 296 EYLDFAERYESTTSAVRAHLFRICHH--SLLEYSDLRERLSYVCTTEDFRQIMDDLERRV 353
Query: 445 IDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRP 481
L ++ +P WIC+PY RP
Sbjct: 354 SKSVSSSGLEFTALKEIALATSPALMPHWICKPYYRP 390
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 53/87 (60%)
Query: 53 CKGTNVVPKDCHSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVS 112
C+G D H + ++ R+++APMVD SEL +R++ R++G+HLC++PM+
Sbjct: 34 CEGNPPELSDSHKLIKKVFWRERIKGIRYVVAPMVDQSELAFRMMLRKHGAHLCFSPMIH 93
Query: 113 AHQFIADKKLRQEILMSTPEDRPLIIQ 139
A F+ D R+ L + +DRPL++Q
Sbjct: 94 AQLFVTDATYRRTALSTCLDDRPLVVQ 120
>gi|353236428|emb|CCA68423.1| related to tRNA dihydrouridine synthase [Piriformospora indica DSM
11827]
Length = 433
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 147/294 (50%), Positives = 198/294 (67%), Gaps = 32/294 (10%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQF--IADKKLRQ---EILMST 200
LGSP+F++APMVD SEL WR+LSRRYG+HL YTPM+++ F I +K R+ IL
Sbjct: 21 LGSPKFVVAPMVDQSELAWRVLSRRYGAHLAYTPMINSKHFGSIRNKTFRELNFSILNGE 80
Query: 201 PE----DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
DRPL++QFCGND + + E+AK+ EP+CD +DIN+GCPQ +AKRG+YGAYLQDDW
Sbjct: 81 EGNEKLDRPLVVQFCGNDPQQVLESAKILEPYCDAVDINLGCPQDIAKRGYYGAYLQDDW 140
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
L+ ++++L + +PV+ K R++ DV KTVEYA+MLERAG Q+L HGRT +QRG+NT
Sbjct: 141 DLIYRIINTLHTNLNIPVTAKFRVFPDVEKTVEYAKMLERAGAQILTCHGRTREQRGVNT 200
Query: 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF---- 372
GLA W I AV++A+++PV ANGNI +D+E CL TG VM+AEGNLYNPALF
Sbjct: 201 GLADWAKIKAVKEAVSVPVFANGNILYYSDIETCLKATGADAVMSAEGNLYNPALFRPSL 260
Query: 373 -----------------TGQTRPAWELASEYLDLVAQY--PVRLQYARGHVFNM 407
+ + P +LA EYL++V Q P +GH+F +
Sbjct: 261 FATDLDLPEKGNKDIDISLEHLPITDLALEYLEIVKQQKTPTDWGAVKGHLFKL 314
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 50/73 (68%), Gaps = 9/73 (12%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQF--IADKKLRQ---EILMST 130
LGSP+F++APMVD SEL WR+LSRRYG+HL YTPM+++ F I +K R+ IL
Sbjct: 21 LGSPKFVVAPMVDQSELAWRVLSRRYGAHLAYTPMINSKHFGSIRNKTFRELNFSILNGE 80
Query: 131 PE----DRPLIIQ 139
DRPL++Q
Sbjct: 81 EGNEKLDRPLVVQ 93
>gi|389610003|dbj|BAM18613.1| t-diRNAhydrouridine synthase [Papilio xuthus]
Length = 364
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 139/268 (51%), Positives = 190/268 (70%), Gaps = 2/268 (0%)
Query: 218 LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCK 277
+ AAKL E CD IDIN+GCPQ +AKRG YGA+LQDDW LL +V+++ QAV VP++CK
Sbjct: 1 MAAAAKLVEKDCDAIDINLGCPQSIAKRGRYGAFLQDDWSLLQKIVTAMSQAVTVPITCK 60
Query: 278 IRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA 337
+R++ ++K++EYA ML+ AGC+LL VHGRT +Q+G TG+A+WEHI AVRKA++IP+ A
Sbjct: 61 VRVFDSIDKSIEYALMLQNAGCKLLTVHGRTREQKGPLTGIANWEHIKAVRKAVSIPMFA 120
Query: 338 NGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPVRL 397
NGNIQCL DV C+ TGV GVM+AEG L NPALF G WE+A EYLDLV +YP
Sbjct: 121 NGNIQCLEDVYRCINFTGVDGVMSAEGILTNPALFEGINPVTWEIAMEYLDLVEKYPCPS 180
Query: 398 QYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFIDYHEGRKLWPPP 457
+ RGH+F + H + TL N++ R L+ ++ D ++ +R +++ +HEGR +
Sbjct: 181 SFIRGHLFKIFHKIFTLEGNNEDRELLATAQNLNDFKQVCIRIRHKYLPFHEGRIHFQDD 240
Query: 458 NYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
M+ +L LPPWICQPYVR +PE+
Sbjct: 241 G--MTRCGFDLILPPWICQPYVRISPEE 266
>gi|213401397|ref|XP_002171471.1| tRNA-dihydrouridine synthase [Schizosaccharomyces japonicus yFS275]
gi|211999518|gb|EEB05178.1| tRNA-dihydrouridine synthase [Schizosaccharomyces japonicus yFS275]
Length = 403
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 151/376 (40%), Positives = 231/376 (61%), Gaps = 39/376 (10%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 199
R + +GSP+ ILAPMVD SELPWR+L+RR G+ +C+TPM + F K R ++ +
Sbjct: 10 RAFYESIGSPKRILAPMVDQSELPWRILARRSGADMCFTPMFHSRLFSESKDYRDKVFST 69
Query: 200 T--PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
PE++PLI+QFCGN+ + + +AAKLAEP+C +D+N+GCPQ +A++G YG+++QD+W
Sbjct: 70 KDIPEEKPLIVQFCGNEVETMLQAAKLAEPYCVAVDLNLGCPQGIARKGKYGSFMQDNWE 129
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
L+ ++S L + VPV+ KIRI+ D ++T+EYA+M+ RAG +L VHGRT +QRG+NTG
Sbjct: 130 LIEAIISKLHAELSVPVTAKIRIFPDPSRTLEYAKMILRAGASILTVHGRTREQRGINTG 189
Query: 318 LASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375
+A W+ I +R+ L + ANGNI +D+E CL TGV GVM+AEG+LYNP +F
Sbjct: 190 IADWDQIKMLREKLPADTVLFANGNILHSSDIERCLEYTGVDGVMSAEGSLYNPKVFLSP 249
Query: 376 TRPAWEL-------ASEYLDLVAQYPVRLQYA-----RGHVFNMCHHLLTLPENSDVRLL 423
+RP EL EY D+V ++ + Y+ +GH+F + H L+ +++D+R +
Sbjct: 250 SRPYTELYPRVDKMCEEYFDIVREHGLTKDYSSLSAMKGHLFKILHSFLS--KHTDLRQV 307
Query: 424 VGKTNHIKDLRKAVDMLRE------------RFIDYHEG-RKLWPPPNYPMSSNHHNLSL 470
+G D V +++E ++D E K YP+ +
Sbjct: 308 LGVKCTPTDFESFVQLVQEVRERIETSLANKEYVDDTESFEKTLDERGYPV--------V 359
Query: 471 PPWICQPYVRPTPEQQ 486
P W QPY+RP P ++
Sbjct: 360 PFWRAQPYIRPLPNRK 375
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST-- 130
+ +GSP+ ILAPMVD SELPWR+L+RR G+ +C+TPM + F K R ++ +
Sbjct: 13 YESIGSPKRILAPMVDQSELPWRILARRSGADMCFTPMFHSRLFSESKDYRDKVFSTKDI 72
Query: 131 PEDRPLIIQ 139
PE++PLI+Q
Sbjct: 73 PEEKPLIVQ 81
>gi|452825082|gb|EME32081.1| tRNA-dihydrouridine synthase 1 [Galdieria sulphuraria]
Length = 314
Score = 300 bits (768), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 140/296 (47%), Positives = 201/296 (67%), Gaps = 5/296 (1%)
Query: 143 FPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 202
+ +LGSP++I APMVD SELP+RLL RRYG LCYTPM+ + F+ ++K R+ + E
Sbjct: 10 YKQLGSPKWICAPMVDQSELPFRLLCRRYGVELCYTPMLHSRIFLQEEKYRKTHFTTCEE 69
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
DRPL++QFC ND AA+L + CD +D+N+GCPQ +AK+G+YGA+LQD+W L+ +
Sbjct: 70 DRPLVVQFCANDPDIFVRAAELVQFQCDAVDLNLGCPQHIAKKGYYGAFLQDNWQLIERI 129
Query: 263 VSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
VS+ + VPV CKIRI+ DV +T+EYARM+E AGCQ+LAVHGRT +Q+G G A+W+
Sbjct: 130 VSTAANKLSVPVWCKIRIFDDVKRTIEYARMIENAGCQVLAVHGRTREQKGKEPGPANWD 189
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRP-AWE 381
I AVR+AL+IPV+ANG++ L + CL TG GV++A L NP LFT P
Sbjct: 190 TIRAVREALSIPVLANGSVSSLQGAKLCLEHTGCLGVLSATHLLDNPKLFTNDPSPDKIV 249
Query: 382 LASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAV 437
L+ EYL+L QYPV L RGH+F + L+++ + + +H++++ + +
Sbjct: 250 LSQEYLELTKQYPVELTMIRGHLFRLWKQLMSISQMQK----LATASHVQEMEQVM 301
>gi|393246893|gb|EJD54401.1| Dus-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 485
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 160/376 (42%), Positives = 224/376 (59%), Gaps = 28/376 (7%)
Query: 131 PEDRPLIIQRTIFPR-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD 189
P R + R + + LGSP+F++APMVD SELPWR+L+RRYG+ L YTPM++A F
Sbjct: 5 PAKRVKLSGRDFYEKVLGSPKFVVAPMVDQSELPWRILARRYGAELAYTPMINAKMFATQ 64
Query: 190 -KKLRQEILMST-------PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQM 241
K +E+ +T PEDRPLI+QFC ND L E+AK P+CD +D+N+GCPQ
Sbjct: 65 TNKAYRELNFNTEHGEEGGPEDRPLIVQFCANDPDQLLESAKALAPYCDAVDLNLGCPQD 124
Query: 242 VAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQL 301
+AKRG YGA+LQDDW L+ L+++L + +PV+ K R++ V KTVEYA+MLERAG Q+
Sbjct: 125 IAKRGRYGAFLQDDWDLIYKLINALHMNLDIPVTAKFRVFPTVEKTVEYAKMLERAGAQI 184
Query: 302 LAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361
LA HGR +QRG+N GLA W+ I AV++A+++PV ANGNI +D+ CL TG +M
Sbjct: 185 LACHGRRREQRGVNAGLADWDKIKAVKEAVSVPVFANGNILFHSDIARCLEATGADAIMV 244
Query: 362 AEGNLYNPALF----TGQTRPA-WELASEYLDLVAQYPVR--LQYARGHVFNMCHHLLTL 414
E LYN A+F G P +LA EYLD+V + + L +GH+F + L+
Sbjct: 245 GESQLYNAAIFHATEVGDYHPRHADLALEYLDIVKKLNTKTNLGAVKGHMFKIMRPALS- 303
Query: 415 PENSDVRLLVGKT------NHIKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSSNHHNL 468
+D+R +G+ I +A ++ER + P P+ + L
Sbjct: 304 -RETDIRDRIGRVRGGTWEESIAQYEEAARDMKERM---DRDAETAPEELEPVFVSGLRL 359
Query: 469 SLPPWICQPYVRPTPE 484
LP W+ QPY R E
Sbjct: 360 -LPHWLAQPYFRVAKE 374
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/115 (45%), Positives = 68/115 (59%), Gaps = 15/115 (13%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD-KKLRQEILMST---- 130
LGSP+F++APMVD SELPWR+L+RRYG+ L YTPM++A F K +E+ +T
Sbjct: 21 LGSPKFVVAPMVDQSELPWRILARRYGAELAYTPMINAKMFATQTNKAYRELNFNTEHGE 80
Query: 131 ---PEDRPLIIQRTIF--PRLGSPRFILAPMVDASEL----PWRLLSR-RYGSHL 175
PEDRPLI+Q +L LAP DA +L P + R RYG+ L
Sbjct: 81 EGGPEDRPLIVQFCANDPDQLLESAKALAPYCDAVDLNLGCPQDIAKRGRYGAFL 135
>gi|336371301|gb|EGN99640.1| hypothetical protein SERLA73DRAFT_134960 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384056|gb|EGO25204.1| hypothetical protein SERLADRAFT_386752 [Serpula lacrymans var.
lacrymans S7.9]
Length = 402
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 160/365 (43%), Positives = 210/365 (57%), Gaps = 27/365 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD-KKLRQEILMSTPE-- 202
LGSP+F++APMVD SEL WRLL+RRYG+ L YTPM++A F K QE + P
Sbjct: 29 LGSPKFVVAPMVDQSELAWRLLARRYGAELAYTPMINAKMFAGGVHKNYQEQNFNIPNGE 88
Query: 203 -----DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
DRPLI+QFC N L +AK+ E HCD +DIN+GCPQ +A++GHYG++LQD+W
Sbjct: 89 EGGPLDRPLIVQFCANSPDQLLASAKVVEAHCDAVDINLGCPQDIARKGHYGSFLQDEWQ 148
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
L+ NLV +L + + VPV+ K R+++ V KTVEYA+MLERAG Q+L HGRT +QRG NTG
Sbjct: 149 LIYNLVHTLHRNLAVPVTAKFRVFETVEKTVEYAKMLERAGAQILTCHGRTREQRGHNTG 208
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF----- 372
LA W I AV++A+++PV ANGNI +D+ CL TG GVM AE LYN LF
Sbjct: 209 LADWAKIRAVKEAVSVPVFANGNILYHSDIARCLEATGADGVMAAEAQLYNATLFALAPS 268
Query: 373 ------TGQTRPAWELASEYLDLVAQYPVR--LQYARGHVFNMCHHLLTLPENSDVRLLV 424
G P +LA EYL +V R + +GH+F + L D+R +
Sbjct: 269 ADPAFDAGLHLPHADLALEYLSIVQGLKTRTPISAVKGHLFKLMRP--ALAREKDLRERL 326
Query: 425 GKTNHIKDLRK----AVDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVR 480
GK + A +M R D E L + LP W+ QPY R
Sbjct: 327 GKIKGAACIEGYIEVAEEMKRRMDRDAREAEGLSIEELVTIEPTTGLKVLPHWLAQPYFR 386
Query: 481 PTPEQ 485
P P +
Sbjct: 387 PLPSE 391
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 48/74 (64%), Gaps = 8/74 (10%)
Query: 74 TQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD-KKLRQEILMSTPE 132
T LGSP+F++APMVD SEL WRLL+RRYG+ L YTPM++A F K QE + P
Sbjct: 27 TVLGSPKFVVAPMVDQSELAWRLLARRYGAELAYTPMINAKMFAGGVHKNYQEQNFNIPN 86
Query: 133 -------DRPLIIQ 139
DRPLI+Q
Sbjct: 87 GEEGGPLDRPLIVQ 100
>gi|167516252|ref|XP_001742467.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779091|gb|EDQ92705.1| predicted protein [Monosiga brevicollis MX1]
Length = 291
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 132/267 (49%), Positives = 181/267 (67%)
Query: 141 TIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 200
F RL +PR ++APMVD SEL WR+L RR G+ LCYTPM ++ F+ D R+ + +
Sbjct: 2 NFFWRLPTPRLVVAPMVDQSELAWRMLCRRKGAVLCYTPMFNSKVFVRDASYRKRMFKAI 61
Query: 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
DRPL++QFCG+D+ L EAAK EP+CD I +N GCPQ +A+RGHYGA+LQD+W LL
Sbjct: 62 EGDRPLVVQFCGDDAATLLEAAKHVEPYCDAISLNCGCPQGIARRGHYGAFLQDEWELLA 121
Query: 261 NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320
+VS+L + + + V CKIRI+ D +T+ YA+M E AGC LL VHGRT +Q+G TGLA
Sbjct: 122 EIVSTLSKNLSIAVECKIRIHDDAERTLAYAKMFEAAGCDLLTVHGRTREQKGTRTGLAD 181
Query: 321 WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW 380
W + +++ L IPV++NGNI AD ACL +TGV G+M++E NL NPA+F GQ
Sbjct: 182 WSLVKRIKEELKIPVVSNGNILYRADCLACLEETGVDGIMSSESNLSNPAMFVGQFPLIS 241
Query: 381 ELASEYLDLVAQYPVRLQYARGHVFNM 407
+L EYL+L ++ R H+F +
Sbjct: 242 DLTQEYLELAKEHKATTSQVRAHLFRL 268
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
+L +PR ++APMVD SEL WR+L RR G+ LCYTPM ++ F+ D R+ + + DR
Sbjct: 6 RLPTPRLVVAPMVDQSELAWRMLCRRKGAVLCYTPMFNSKVFVRDASYRKRMFKAIEGDR 65
Query: 135 PLIIQ 139
PL++Q
Sbjct: 66 PLVVQ 70
>gi|395335120|gb|EJF67496.1| Dus-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 423
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 162/393 (41%), Positives = 230/393 (58%), Gaps = 61/393 (15%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI-ADKKLRQEILMST---- 200
LGSP++I+APMVD SEL WR LSR+YG+ L YTPM++A + +K +E T
Sbjct: 23 LGSPKYIVAPMVDQSELAWRKLSRKYGAQLVYTPMINAKMYAEGSRKPYREQNFDTVHGE 82
Query: 201 ---PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
PEDRPLI+QFC N+ L +AKL EP+CD +DIN+GCPQ +A+RGHYG++LQD+W
Sbjct: 83 EGGPEDRPLIVQFCANNPSQLLTSAKLLEPYCDAVDINLGCPQDIARRGHYGSFLQDEWD 142
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
L+ L+ +L + + +PV+ K R++ V KTVEYA+MLE AG Q+L HGR +QRG +G
Sbjct: 143 LVHKLIHTLHENLSIPVTAKFRVFPTVEKTVEYAKMLESAGAQMLTCHGRIREQRGQRSG 202
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF----- 372
LA WE I AV++A+++PV+ANGNI D+E CL+ TG VM+AEGNLYNPA+F
Sbjct: 203 LADWEKIRAVKEAVSVPVVANGNILFHGDIEKCLSATGADAVMSAEGNLYNPAIFQPDPS 262
Query: 373 ---------------TGQTRPAWELASEYLDLV-AQYPVRLQYA-RGHVFNMCHHLLTLP 415
TGQ LA EYL +V +Q + A +GH+F + L+
Sbjct: 263 AIEPVASTSSASQYLTGQHPRNTHLALEYLAIVKSQKTLTTPSAVKGHLFKLLRPALS-- 320
Query: 416 ENSDVRLLVGKT---------------NHIKDLRKAVDMLRERFIDYHEGRKLW------ 454
+ +D+R +G+ + +++ + +D ER I+ R L
Sbjct: 321 KYTDIRERLGRVRVERADRDKEGGTAWDKYEEIIEELDERLERDIEAASDRTLEELSPID 380
Query: 455 PPPNYPMSSNHHNLSLPPWICQPYVRPTPEQQE 487
P +P+ LP W+ QPY+RP P + E
Sbjct: 381 PATGFPV--------LPHWLAQPYIRPLPAEPE 405
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 48/72 (66%), Gaps = 8/72 (11%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI-ADKKLRQEILMST---- 130
LGSP++I+APMVD SEL WR LSR+YG+ L YTPM++A + +K +E T
Sbjct: 23 LGSPKYIVAPMVDQSELAWRKLSRKYGAQLVYTPMINAKMYAEGSRKPYREQNFDTVHGE 82
Query: 131 ---PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 83 EGGPEDRPLIVQ 94
>gi|332251618|ref|XP_003274943.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Nomascus leucogenys]
Length = 438
Score = 294 bits (752), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 162/345 (46%), Positives = 205/345 (59%), Gaps = 54/345 (15%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
L L VHGRT +Q+G +G ASWEH
Sbjct: 134 LLL-----------------------------------LTVHGRTKEQKGPLSGAASWEH 158
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE CL TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 159 IKAVRKAVAIPVFANGNIQCLQDVERCLQDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 218
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYLD+V ++P L Y R H+F + HH TL + ++R + K ++ + L+ R
Sbjct: 219 EEYLDIVREHPCPLSYVRAHLFKLWHH--TLQVHQELREELAKVKTLEGIAAVSQELKLR 276
Query: 444 F---IDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
I EG K P + P WICQPY+RP P +
Sbjct: 277 CQEEISRQEGAK--PTGDLPFH----------WICQPYIRPGPRE 309
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 49/70 (70%), Gaps = 3/70 (4%)
Query: 73 WTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST- 130
W++ L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 10 WSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEV 69
Query: 131 -PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 70 CPEDRPLIVQ 79
>gi|403419264|emb|CCM05964.1| predicted protein [Fibroporia radiculosa]
Length = 495
Score = 293 bits (751), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 159/394 (40%), Positives = 225/394 (57%), Gaps = 58/394 (14%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD--KKLRQEILMST--- 200
LGSP++++APMVD SEL WR LSR+YG+ L YTPM++A F D ++ R++ +T
Sbjct: 26 LGSPKYVVAPMVDQSELAWRKLSRKYGAQLVYTPMINAKMFAQDMRRQYREQAFNTTFGE 85
Query: 201 ---PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
PEDRPLI+QFC ND + L +A+ E +CD +D+N+GCPQ +A+RGHYG++LQD+W
Sbjct: 86 EGGPEDRPLIVQFCANDPEQLLVSARAVEGYCDAVDVNLGCPQDIARRGHYGSFLQDEWD 145
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
L+ NL+++L + + VPV+ K R++ V KTVEYA+MLERAG Q+L HGRT +QRG +G
Sbjct: 146 LIYNLINTLHRNLNVPVTAKFRVFSTVEKTVEYAKMLERAGAQILTCHGRTREQRGHKSG 205
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF----- 372
LA WE I AV++A+++PV ANGNI +D+E CL TG VM+AEGNLYNPA+F
Sbjct: 206 LADWEKIRAVKEAVSVPVFANGNILFHSDIERCLKATGADAVMSAEGNLYNPAIFCAADP 265
Query: 373 --------------------------------TGQTRPAWELASEYLDLVA--QYPVRLQ 398
TG +LA EYL +V + P
Sbjct: 266 FVSTSGPASSSSSPSSGPTSGSDAVSLLSEYLTGMHPRCTQLAREYLAIVKSQRTPTAPS 325
Query: 399 YARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKD--------LRKAVDMLRERFIDYHEG 450
+GH+F + L + D+R +G+ K+ + VD L +R
Sbjct: 326 AVKGHLFKLLRP--ALGKEKDLREQLGRARIDKNDDSVALTRYGEIVDELNKRMERDEIA 383
Query: 451 RKLWPPPNYPMSSNHHNLS-LPPWICQPYVRPTP 483
+ P + ++ L LP W+ QPY RP P
Sbjct: 384 TEGKDPGSLVVTDGPTGLPVLPHWLVQPYFRPLP 417
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 51/72 (70%), Gaps = 8/72 (11%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD--KKLRQEILMST--- 130
LGSP++++APMVD SEL WR LSR+YG+ L YTPM++A F D ++ R++ +T
Sbjct: 26 LGSPKYVVAPMVDQSELAWRKLSRKYGAQLVYTPMINAKMFAQDMRRQYREQAFNTTFGE 85
Query: 131 ---PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 86 EGGPEDRPLIVQ 97
>gi|409052056|gb|EKM61532.1| hypothetical protein PHACADRAFT_180642 [Phanerochaete carnosa
HHB-10118-sp]
Length = 473
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 161/386 (41%), Positives = 221/386 (57%), Gaps = 54/386 (13%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD--KKLRQEIL------ 197
LGSP++++APMVD SEL WR LSR+YG+ L YTPM++A F D K R E+
Sbjct: 23 LGSPKYVVAPMVDQSELAWRRLSRKYGAQLIYTPMINARMFAQDQRKSYRPEMFDLGSGE 82
Query: 198 MSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
DRPLI+QF ND L +AAK+ E CD +DIN+GCPQ +A+RGHYG+YLQD+W
Sbjct: 83 EGGLGDRPLIVQFAANDLDWLLKAAKMVEARCDAVDINLGCPQDIARRGHYGSYLQDEWD 142
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
L+ ++++L + + +PV+ K R++ + KTVEYA+MLE AG Q+L HGRT +QRG NTG
Sbjct: 143 LIYKMINNLHKNLSIPVTAKFRVFPTIEKTVEYAKMLESAGAQILTCHGRTREQRGHNTG 202
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF----- 372
LA WE I AV++A+++PVIANGNI +D+EACLA TG VM+AEGNLYNP +F
Sbjct: 203 LADWEKIRAVKEAVSVPVIANGNILFHSDIEACLAATGADAVMSAEGNLYNPVVFMSAPA 262
Query: 373 ------------------TGQTRPAWELASEYLDLVAQYPVRLQYA--RGHVFNMCHHLL 412
G P LA EYL +V R + + +GH+F +
Sbjct: 263 SSSSLADPALPSTWCISSDGLHLPHTHLALEYLAIVKSQKTRTKGSAVKGHLFKLLRP-- 320
Query: 413 TLPENSDVRLLVGKT-----------NHIKDLRKAVDMLRERFIDYHEGRKLWPPPNYPM 461
L +D+R +G+ + + L K D +R EGR P +
Sbjct: 321 ALGRETDLRDRLGRIQIKRLGDSEAWDQYEALIKEFDERMQRDARAAEGR-----PVDKL 375
Query: 462 SSNHHNLSL---PPWICQPYVRPTPE 484
+ H + L P W+ QPY R P+
Sbjct: 376 ITVHESTGLKMMPHWVAQPYFRAMPK 401
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 46/72 (63%), Gaps = 8/72 (11%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD--KKLRQEIL------ 127
LGSP++++APMVD SEL WR LSR+YG+ L YTPM++A F D K R E+
Sbjct: 23 LGSPKYVVAPMVDQSELAWRRLSRKYGAQLIYTPMINARMFAQDQRKSYRPEMFDLGSGE 82
Query: 128 MSTPEDRPLIIQ 139
DRPLI+Q
Sbjct: 83 EGGLGDRPLIVQ 94
>gi|296476150|tpg|DAA18265.1| TPA: PP3111 protein [Bos taurus]
Length = 266
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 136/227 (59%), Positives = 174/227 (76%), Gaps = 2/227 (0%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
LG R ++APMVD SEL WRLLSRR+G+HLCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAHLCYTPMLHAQVFVRDANYRKENLYCDVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
I AVRKA+TIPV ANGNIQCL DVE C+ TGV GVM+A + +PA
Sbjct: 194 IKAVRKAVTIPVFANGNIQCLRDVERCIQDTGVQGVMSAGEAVPSPA 240
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 51/70 (72%), Gaps = 3/70 (4%)
Query: 73 WTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS-- 129
W++ LG R ++APMVD SEL WRLLSRR+G+HLCYTPM+ A F+ D R+E L
Sbjct: 10 WSRTLGGARHVVAPMVDQSELAWRLLSRRHGAHLCYTPMLHAQVFVRDANYRKENLYCDV 69
Query: 130 TPEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 70 CPEDRPLIVQ 79
>gi|118151248|ref|NP_001071552.1| tRNA-dihydrouridine synthase 1-like [Bos taurus]
gi|117306348|gb|AAI26847.1| Dihydrouridine synthase 1-like (S. cerevisiae) [Bos taurus]
Length = 270
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 136/227 (59%), Positives = 174/227 (76%), Gaps = 2/227 (0%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
LG R ++APMVD SEL WRLLSRR+G+HLCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAHLCYTPMLHAQVFVRDANYRKENLYCDVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
I AVRKA+TIPV ANGNIQCL DVE C+ TGV GVM+A + +PA
Sbjct: 194 IKAVRKAVTIPVFANGNIQCLRDVERCIQDTGVQGVMSAGEAVPSPA 240
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 51/70 (72%), Gaps = 3/70 (4%)
Query: 73 WTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST- 130
W++ LG R ++APMVD SEL WRLLSRR+G+HLCYTPM+ A F+ D R+E L
Sbjct: 10 WSRTLGGARHVVAPMVDQSELAWRLLSRRHGAHLCYTPMLHAQVFVRDANYRKENLYCDV 69
Query: 131 -PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 70 CPEDRPLIVQ 79
>gi|392570548|gb|EIW63720.1| Dus-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 431
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 160/394 (40%), Positives = 225/394 (57%), Gaps = 56/394 (14%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI-ADKKLRQEILMST---- 200
L SP+FI+APMVD SEL WR LSRRYG + YTPM++A F ++K +E T
Sbjct: 24 LRSPKFIVAPMVDQSELAWRKLSRRYGGQVVYTPMINAKMFAEGNRKPYREQNFDTIHGE 83
Query: 201 ---PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
PEDRPLI+QFC N++ L ++AKL E HCD +DIN+GCPQ +A+RG YG++LQD+W
Sbjct: 84 EGGPEDRPLIVQFCANNAAQLLKSAKLLEAHCDAVDINLGCPQDIARRGRYGSFLQDEWE 143
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
L+ ++S+L + + +PV+ K R++ V KTVEYA+MLE AG Q+L HGRT +QRG +G
Sbjct: 144 LIHEMISTLHRELSIPVTAKFRVFPTVEKTVEYAKMLESAGAQILTCHGRTREQRGQRSG 203
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF----- 372
LA WE I AV++A+++PVIANGN+ D+E CLA TG VM+AEGNLYNPA+F
Sbjct: 204 LADWEKIRAVKEAVSVPVIANGNLLFYGDIERCLAATGADAVMSAEGNLYNPAIFMPAPS 263
Query: 373 ------------------------TGQTRPAWELASEYLDLVAQYPVRL--QYARGHVFN 406
TG LA EYL +V +GH+F
Sbjct: 264 TSESPSASTSSAHTSASSIASMYLTGHHPRNTTLALEYLSIVKSQKTMTTPSSVKGHLFK 323
Query: 407 MCHHLLTLPENSDVRLLVGKT-------------NHIKDLRKAVDMLRERFIDYHEGRKL 453
+ L + +D+R +GK + +++ + +D E I+ +G+ L
Sbjct: 324 LLRP--ALGKYTDLRERLGKVRVERAERDKNGAWDRYEEVIRELDERLELDIEAAKGKSL 381
Query: 454 WPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQQE 487
P+ LP W+ QPY+RP P++ E
Sbjct: 382 --EELSPIDEATGFPILPHWLVQPYIRPLPKEPE 413
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 47/72 (65%), Gaps = 8/72 (11%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI-ADKKLRQEILMST---- 130
L SP+FI+APMVD SEL WR LSRRYG + YTPM++A F ++K +E T
Sbjct: 24 LRSPKFIVAPMVDQSELAWRKLSRRYGGQVVYTPMINAKMFAEGNRKPYREQNFDTIHGE 83
Query: 131 ---PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 84 EGGPEDRPLIVQ 95
>gi|396081789|gb|AFN83404.1| tRNA-dihydrouridine synthase [Encephalitozoon romaleae SJ-2008]
Length = 340
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 139/309 (44%), Positives = 202/309 (65%), Gaps = 9/309 (2%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK--LRQEIL 197
+ + + P F +APMV SE WR LS+RYG+++ YT MV F+ + +R +
Sbjct: 2 KKFWEEISKPYFAVAPMVGNSEEAWRRLSKRYGANMFYTQMVHCESFLRGPRNPVRNQWY 61
Query: 198 MSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
++ EDRPLIIQ CGN + + EAA + + HCD IDIN GCPQ VA++G YGAYLQ++W
Sbjct: 62 TTSEEDRPLIIQICGNSPEAMLEAALIMQDHCDAIDINFGCPQRVARKGGYGAYLQENWD 121
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
L +V +L + +PV CKIR+++ + KTVEY RM+E+AGC LLAVHGRT DQ+G G
Sbjct: 122 LTEKIVKTLSTNLSIPVFCKIRVFESIEKTVEYTRMIEKAGCSLLAVHGRTRDQKGKAMG 181
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
ASW+HI AV+++LTIPV++NGNI +D+ CL T GVM E +LYNP +FTG+++
Sbjct: 182 FASWDHIKAVKESLTIPVLSNGNIMVHSDIWRCLEYTKCDGVMVGETHLYNPLIFTGESK 241
Query: 378 PAWELASEYLDLVAQYP--VRLQYARGHVFNMCH-HLLTLPENSDVRLLVGKTNHIKDLR 434
P E+ EYLD+ ++P + + + H+F + + + LT N D R +V N I+
Sbjct: 242 PCLEIIREYLDICMEFPGSADVGHMKSHIFKLLYNYFLT---NPDRRPIVDSCNTIEKFY 298
Query: 435 K-AVDMLRE 442
K +D+++E
Sbjct: 299 KFYLDLVKE 307
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK--LRQEILMST 130
W ++ P F +APMV SE WR LS+RYG+++ YT MV F+ + +R + ++
Sbjct: 5 WEEISKPYFAVAPMVGNSEEAWRRLSKRYGANMFYTQMVHCESFLRGPRNPVRNQWYTTS 64
Query: 131 PEDRPLIIQ 139
EDRPLIIQ
Sbjct: 65 EEDRPLIIQ 73
>gi|393213071|gb|EJC98568.1| Dus-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 448
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 165/392 (42%), Positives = 216/392 (55%), Gaps = 61/392 (15%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKL---RQEILMSTPE 202
LGSP+F++APMVD SELPWR+LSR YG+ L YTPM++A DK Q +S E
Sbjct: 26 LGSPKFVVAPMVDQSELPWRILSRHYGAQLVYTPMINARMLSEDKHKSYKEQAFNLSHGE 85
Query: 203 -----DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
DRPLI+QF ND L +AAKL E HCD +DIN GCPQ +A+RGHYG+YLQDDW
Sbjct: 86 EGSTFDRPLIVQFAANDPDQLLKAAKLVESHCDAVDINFGCPQDIARRGHYGSYLQDDWD 145
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
L+ L+++L + + +PV+ K R++ V KTVEYA+M+ERAG Q+L HGRT DQRG NTG
Sbjct: 146 LVYRLINTLHENLSIPVTAKFRVFPTVEKTVEYAKMMERAGAQILTCHGRTRDQRGQNTG 205
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP-------- 369
LA W+ I AV++A+ +PV ANGNI +D++ CL TG VMTAE NLYNP
Sbjct: 206 LADWDKIRAVKQAVAVPVFANGNILFHSDIQRCLEVTGADAVMTAEANLYNPTVLLRASA 265
Query: 370 --------------------ALFT-----GQTRPAWELASEYLDLVA--QYPVRLQYARG 402
A FT G P+ LA EYL +V + P +G
Sbjct: 266 IPSASCDPDPLSSTNVHPSSAFFTLPDDPGAYLPSTVLAFEYLKIVRALRTPTHTSAIKG 325
Query: 403 HVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMS 462
H+F + L + ++D+R +G + K + +D E I E R P +
Sbjct: 326 HLFKLLRPALII--HTDLRAKLGMVSSKKGMDALLDEY-ESIIREAETR--VTPEIERVR 380
Query: 463 SNHHNLS-------------LPPWICQPYVRP 481
L LP W+ QPY RP
Sbjct: 381 KGEVQLEDLVTVDEVSGLRILPHWLAQPYFRP 412
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/72 (52%), Positives = 47/72 (65%), Gaps = 8/72 (11%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK---LRQEILMSTPE 132
LGSP+F++APMVD SELPWR+LSR YG+ L YTPM++A DK Q +S E
Sbjct: 26 LGSPKFVVAPMVDQSELPWRILSRHYGAQLVYTPMINARMLSEDKHKSYKEQAFNLSHGE 85
Query: 133 -----DRPLIIQ 139
DRPLI+Q
Sbjct: 86 EGSTFDRPLIVQ 97
>gi|169845921|ref|XP_001829678.1| tRNA-dihydrouridine synthase 1 [Coprinopsis cinerea okayama7#130]
gi|116509234|gb|EAU92129.1| tRNA-dihydrouridine synthase 1 [Coprinopsis cinerea okayama7#130]
Length = 561
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 163/394 (41%), Positives = 226/394 (57%), Gaps = 53/394 (13%)
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI--ADKKLR------ 193
+ +LGSP++I+APMVD SEL +R L R+YG+ L YTPM++A F +K R
Sbjct: 27 FYRKLGSPKYIVAPMVDQSELAFRRLCRQYGAQLIYTPMINAKMFTDPVNKSYRASAFDI 86
Query: 194 ---QEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGA 250
+E M++ DRPLI+QFC ND L ++AK+ E +CD +DIN+GCPQ +AKRG YG+
Sbjct: 87 ASGEEGDMAS--DRPLIVQFCANDPDQLLQSAKVVEKYCDAVDINLGCPQDIAKRGRYGS 144
Query: 251 YLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVD 310
+LQDDWPL+ +++++L + +PV+ K R++ DV KTVEYA+MLERAG Q+L HGR +
Sbjct: 145 FLQDDWPLIYSMINTLHVNLSIPVTAKFRVFPDVEKTVEYAKMLERAGAQILTCHGRIRE 204
Query: 311 QRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
QRG NTGLA W I AV++A+ +PV ANGNI D+ CL +TG GVM+AEG LYNPA
Sbjct: 205 QRGQNTGLADWSKIRAVKEAVKVPVFANGNILFQDDIARCLEETGCDGVMSAEGILYNPA 264
Query: 371 LFTGQTRPAWE--------------LASEYLDLVAQYPVR--LQYARGHVFNMCHHLLTL 414
LF G P+ LAS+YL +V + + +GH+F + LT
Sbjct: 265 LFYGLDAPSSSPKPPTTDLYPMHTTLASQYLSIVLSLKTKTPVSAVKGHLFKLMRPALT- 323
Query: 415 PENSDVRLLVGKTN---------------HIKDLRKAVDMLRERFI----DYHEGRKLWP 455
D+R +G+T K LR+ V ++ E + D E K
Sbjct: 324 -RELDLRERLGRTGLKPGKGGDADSEGKKGDKWLRECVAIVEEMRVRMERDAKEATKDGT 382
Query: 456 PPNYPMSSNHHNLSL---PPWICQPYVRPTPEQQ 486
P + + L P W+ QPY RP P Q
Sbjct: 383 IPLEDLVTTCPKTGLRLMPHWVAQPYFRPLPVPQ 416
>gi|401827139|ref|XP_003887662.1| tRNA-dihydrouridine synthase [Encephalitozoon hellem ATCC 50504]
gi|392998668|gb|AFM98681.1| tRNA-dihydrouridine synthase [Encephalitozoon hellem ATCC 50504]
Length = 340
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 141/320 (44%), Positives = 204/320 (63%), Gaps = 8/320 (2%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK--LRQEIL 197
+ + + P F +APMV SE WR LS+RYG+++ YT MV F+ + +R +
Sbjct: 2 KKFWEEISRPYFAVAPMVGNSEEAWRRLSKRYGANIFYTEMVHCESFLRGSRNPVRNQWY 61
Query: 198 MSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
++PEDRPL+IQ CGN + + EAA + + HCD IDIN GCPQ VA++G+YGAYLQ++W
Sbjct: 62 TTSPEDRPLVIQICGNSPEVMLEAALIMQDHCDAIDINFGCPQRVARKGNYGAYLQENWG 121
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
L +V L + VPV CKIR+++ + KTVEYA+M+ERAGC LAVHGRT DQ+G + G
Sbjct: 122 LTEKIVKVLSTNLSVPVFCKIRVFKSIEKTVEYAKMIERAGCSFLAVHGRTRDQKGESMG 181
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
LASW+HI AV++ALTIPV++NGNI D+ CL T GVM E +LYNP +FTG+ +
Sbjct: 182 LASWDHIRAVKEALTIPVLSNGNIMVHDDIWRCLEYTKCDGVMVGESHLYNPLIFTGENK 241
Query: 378 PAWELASEYLDLVAQYP--VRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRK 435
P E+ EYLD+ ++P + + + H+F + ++ + N R V N I+ +
Sbjct: 242 PCLEIIGEYLDICMKFPGSADVGHVKSHIFKLLYNYFLV--NPGKRPAVDSCNTIERFHE 299
Query: 436 A-VDMLRE-RFIDYHEGRKL 453
+D++ E R+ EG +
Sbjct: 300 LYLDLVEEMRYTASKEGNSV 319
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK--LRQEILMST 130
W ++ P F +APMV SE WR LS+RYG+++ YT MV F+ + +R + ++
Sbjct: 5 WEEISRPYFAVAPMVGNSEEAWRRLSKRYGANIFYTEMVHCESFLRGSRNPVRNQWYTTS 64
Query: 131 PEDRPLIIQ 139
PEDRPL+IQ
Sbjct: 65 PEDRPLVIQ 73
>gi|341883697|gb|EGT39632.1| hypothetical protein CAEBREN_09627 [Caenorhabditis brenneri]
Length = 525
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 148/342 (43%), Positives = 203/342 (59%), Gaps = 15/342 (4%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPMVD SEL +R+ +R+YG+ L +TPM+ AH F+ D R+ L DRPLI+QFC
Sbjct: 74 VLAPMVDQSELAFRMFTRKYGAQLTFTPMIHAHLFVNDGTYRRNSLALVKADRPLIVQFC 133
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
N + A +L E CDG+D+N+GCPQMVAKRG YG++LQD+ L+ +VS++R +
Sbjct: 134 ANKVETFLAACRLVEDVCDGVDLNLGCPQMVAKRGRYGSWLQDEVDLICEMVSAVRDYCK 193
Query: 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL 331
+PVSCKIR+ D +TVEYAR L AG +L VHGRT D +G +TGLA W I V +A+
Sbjct: 194 LPVSCKIRVRDDREQTVEYARRLVEAGATMLTVHGRTRDMKGADTGLADWSRIRDVVEAV 253
Query: 332 --TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--TGQTRPAWELASEYL 387
+PV+ANGNIQ DVE C+ +TG VM+AEG LYNP +F T W++A+EYL
Sbjct: 254 GSKVPVMANGNIQFPGDVERCMKETGAVAVMSAEGLLYNPLIFDDTNAHVETWKIAAEYL 313
Query: 388 DLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFIDY 447
+ ++ R HVF +CHH +L E D+R+ V + ++D V+ L +R
Sbjct: 314 EYARKFHAGTSAIRAHVFRICHH--SLLEYEDLRMRVSLEHRVEDFENIVEELGKRARAD 371
Query: 448 HEGRKLWPPPNYPMSSNHHNLSL---------PPWICQPYVR 480
E K + N L P WI +PY R
Sbjct: 372 AETGKEREAEARQLFETIRNGQLMDAIEVSKQPHWISKPYFR 413
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 40/58 (68%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+LAPMVD SEL +R+ +R+YG+ L +TPM+ AH F+ D R+ L DRPLI+Q
Sbjct: 74 VLAPMVDQSELAFRMFTRKYGAQLTFTPMIHAHLFVNDGTYRRNSLALVKADRPLIVQ 131
>gi|341882002|gb|EGT37937.1| hypothetical protein CAEBREN_17932 [Caenorhabditis brenneri]
Length = 525
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 146/342 (42%), Positives = 204/342 (59%), Gaps = 15/342 (4%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPMVD SEL +R+ +R+YG+ L +TPM+ AH F+ D R+ L DRPLI+QFC
Sbjct: 74 VLAPMVDQSELAFRMFTRKYGAQLTFTPMIHAHLFVNDGTYRRNSLALVKADRPLIVQFC 133
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
N + A +L E CDG+D+N+GCPQMVAKRG YG++LQD+ L+ +VS++R +
Sbjct: 134 ANKVETFLAACRLVEDVCDGVDLNLGCPQMVAKRGRYGSWLQDEVDLICEMVSAVRDYCK 193
Query: 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL 331
+PVSCKIR+ +D +TVEYA+ L AG +L VHGRT D +G +TGLA W I + +A+
Sbjct: 194 LPVSCKIRVREDREQTVEYAKRLVEAGATMLTVHGRTRDMKGADTGLADWSRIRDIVEAV 253
Query: 332 --TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--TGQTRPAWELASEYL 387
+PV+ANGNIQ DVE C+ +TG VM+AEG LYNP +F T W++A+EYL
Sbjct: 254 GSKVPVMANGNIQFPGDVERCMKETGAVAVMSAEGLLYNPLIFDDTNAHVETWKIAAEYL 313
Query: 388 DLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFIDY 447
+ ++ R HVF +CHH +L E D+R+ V + ++D V+ L +R
Sbjct: 314 EYARKFHAGTSAIRAHVFRICHH--SLLEYEDLRMRVSLEHRVEDFENIVEELGKRARAD 371
Query: 448 HEGRKLWPPPNYPMSSNHHNLSL---------PPWICQPYVR 480
E K + N L P WI +PY R
Sbjct: 372 AETGKEREAEARQLFETIRNGQLMDAIEVSKQPHWISKPYFR 413
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 40/58 (68%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+LAPMVD SEL +R+ +R+YG+ L +TPM+ AH F+ D R+ L DRPLI+Q
Sbjct: 74 VLAPMVDQSELAFRMFTRKYGAQLTFTPMIHAHLFVNDGTYRRNSLALVKADRPLIVQ 131
>gi|302687524|ref|XP_003033442.1| hypothetical protein SCHCODRAFT_256941 [Schizophyllum commune H4-8]
gi|300107136|gb|EFI98539.1| hypothetical protein SCHCODRAFT_256941 [Schizophyllum commune H4-8]
Length = 467
Score = 287 bits (734), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 154/388 (39%), Positives = 225/388 (57%), Gaps = 52/388 (13%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE--- 202
LGSP++++APMVD SEL +R+L RRYG+ + YTPM++AH F K +Q+ E
Sbjct: 33 LGSPKYVVAPMVDQSELAFRILCRRYGAQVAYTPMINAHVFPFYGKKQQDKNFDVSEGEE 92
Query: 203 -----DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
DRPL++QFCGN+ L +A++ E HCD +D+N+GCPQ +AK+GHYG++LQD+W
Sbjct: 93 GAQGLDRPLVVQFCGNNPDELLASARIVEAHCDAVDLNLGCPQDIAKKGHYGSWLQDEWE 152
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
L+ LV++L + + +PV+ K RI+ D +T+ YA+MLERAG Q+L VHGRT DQRG+N+G
Sbjct: 153 LVYKLVNTLHENLSIPVTAKFRIFSDPERTLAYAKMLERAGAQILTVHGRTRDQRGVNSG 212
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
LA W+ I V++A+++PV+ANGN+ D+EACL TG G+M+AEG LYNPALF G
Sbjct: 213 LADWKQIAMVKQAVSVPVLANGNMLYQEDIEACLQATGADGIMSAEGLLYNPALFVGLAP 272
Query: 378 --------------------------PAWELASEYLDLVAQYP--VRLQYARGHVFNMCH 409
LA EYL + + L RGH+F +
Sbjct: 273 PPRPSSSSSVHPLLATSSGSAPNLHPSVTALAFEYLTICRELNTHTSLGAIRGHLFKILR 332
Query: 410 HLLTLPENSDVRLLVGKTNHIKDLRKAVDMLR---------ERFIDYHEGRKLWPPPNYP 460
L +++D+R +G+ ++D K +R E I E R ++P
Sbjct: 333 P--ALAKHTDLREKLGRA-RVRDKGKGWWKVRGEDGSLTEYEEIIGELEDRLKADAESHP 389
Query: 461 MSSNHHNLS----LPPWICQPYVRPTPE 484
+ + +P W+ QPY+RP PE
Sbjct: 390 ATITADPETGLKEVPWWLTQPYIRPLPE 417
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 8/72 (11%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE--- 132
LGSP++++APMVD SEL +R+L RRYG+ + YTPM++AH F K +Q+ E
Sbjct: 33 LGSPKYVVAPMVDQSELAFRILCRRYGAQVAYTPMINAHVFPFYGKKQQDKNFDVSEGEE 92
Query: 133 -----DRPLIIQ 139
DRPL++Q
Sbjct: 93 GAQGLDRPLVVQ 104
>gi|388580092|gb|EIM20409.1| Dus-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 464
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 151/355 (42%), Positives = 221/355 (62%), Gaps = 17/355 (4%)
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI-----ADKKLRQEI 196
++ LG P+ I+APMVD SEL WR+LSRRYG+ L YTPM++A Q+ + KK+ +
Sbjct: 15 LYEALGRPKKIVAPMVDQSELAWRILSRRYGATLAYTPMINAKQYSQLKTDSSKKIWFDK 74
Query: 197 LMSTPE----DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 252
+ + DRPLI+QF ND K L E+AK + CD +D+N+GCPQ +A+RG YG++L
Sbjct: 75 INNEEGADNLDRPLIVQFAANDPKLLLESAKDLQGKCDAVDLNLGCPQHIARRGRYGSWL 134
Query: 253 QDDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQ 311
QD+W L+ +L+++L + +Q +PV+ K R++ DVN+TVEYA++LE AG Q+L VHGRT +
Sbjct: 135 QDEWDLIHSLINTLHENLQDIPVTAKFRVFDDVNRTVEYAKLLESAGAQILTVHGRTREM 194
Query: 312 RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371
+G NTGLA WE I AV+ A+ +PV ANGNI D+E CL TG GVM+AEGNLYNPA+
Sbjct: 195 KGHNTGLADWEKIKAVKDAVNVPVFANGNILYQEDIEKCLKATGCDGVMSAEGNLYNPAI 254
Query: 372 FTGQTRPAW--ELASEYLDLVAQYPVRLQYA--RGHVFNMCHHLLTLPENSDVRLLVGKT 427
F+ + + ++A EYLD+V + + H+F + L+ + +D+R +GK
Sbjct: 255 FSEKASHPYVVKVAKEYLDIVDSLKTETSVSAQKAHLFKIFKPCLS--KWTDLRDRLGK- 311
Query: 428 NHIKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPT 482
KD R V+ R E + + ++P + QPY+RPT
Sbjct: 312 GQPKDWRGIVEEFETRIKSDAEFKNEDELSDVKDLDEQGYRTVPYFYAQPYLRPT 366
>gi|426200879|gb|EKV50802.1| hypothetical protein AGABI2DRAFT_181833 [Agaricus bisporus var.
bisporus H97]
Length = 446
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 160/387 (41%), Positives = 221/387 (57%), Gaps = 50/387 (12%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIA-DKKLRQEILMST---- 200
LGSP++I+APMVD SEL WR LSRRYG+ + Y+PM++A F K +EI +T
Sbjct: 18 LGSPKYIVAPMVDQSELAWRKLSRRYGAQVVYSPMINAKMFATQSNKHYREINFNTVCGE 77
Query: 201 ----PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
DRPL++QFC ND L +AK+ EPHCD IDIN+GCPQ +AK+G YGAYLQDDW
Sbjct: 78 EGDLTVDRPLVVQFCANDPDQLLASAKIIEPHCDAIDINLGCPQDIAKKGKYGAYLQDDW 137
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
L+ L++ L + +PV+ K R++ V KTV YA+MLE AG Q+L HGR +QRG+NT
Sbjct: 138 DLIYKLINILHTNLSIPVTAKFRVFPTVEKTVAYAKMLESAGAQILTCHGRIREQRGVNT 197
Query: 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT 376
GLA W I AV++A+++PV ANGN+ +D+ CL TG GVM+AEG LYNPALF G T
Sbjct: 198 GLADWTKIRAVKEAVSVPVFANGNVLYQSDIFDCLKATGADGVMSAEGQLYNPALFHGLT 257
Query: 377 RPAW----------------------ELASEYLDLV--AQYPVRLQYARGHVFNMCHHLL 412
+ +LA EYLD+V + P + +GH+F + L
Sbjct: 258 SLSTPPPKDTTYLSDEDILLRHPRHCDLAIEYLDIVLSQKTPTIVSAVKGHLFKIMRPGL 317
Query: 413 TLPENSDVRLLVGKT--------NHIKDLRKAVDMLRERF--IDYHEGRKLWPP--PNYP 460
T + D+R +GK ++ + L+ER + G +L P
Sbjct: 318 T--KEKDLRERLGKVRVNPKAPREGYQEYLRICHELKERMERDEKSVGGRLLTELIETEP 375
Query: 461 MSSNHHNLSLPPWICQPYVRPTPEQQE 487
++ +P W+ QPY RP P + +
Sbjct: 376 VTGIQ---VMPHWLAQPYFRPPPSKSQ 399
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 9/73 (12%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIA-DKKLRQEILMST---- 130
LGSP++I+APMVD SEL WR LSRRYG+ + Y+PM++A F K +EI +T
Sbjct: 18 LGSPKYIVAPMVDQSELAWRKLSRRYGAQVVYSPMINAKMFATQSNKHYREINFNTVCGE 77
Query: 131 ----PEDRPLIIQ 139
DRPL++Q
Sbjct: 78 EGDLTVDRPLVVQ 90
>gi|313218109|emb|CBY41424.1| unnamed protein product [Oikopleura dioica]
Length = 283
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 129/235 (54%), Positives = 169/235 (71%), Gaps = 8/235 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE-------ILM 198
L SP+F++APMVDASELPWR+LSRRY + LCYTPM A +I D R+E +
Sbjct: 37 LKSPKFVVAPMVDASELPWRVLSRRYSAELCYTPMFHAANYIKDATYRRENFPDTGDLEQ 96
Query: 199 STPE-DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
+PE DRPL +QFC ND + AAK+ E CD +D+N+GCPQM+AKRGHYGA++ +DW
Sbjct: 97 GSPEFDRPLFVQFCANDINAFSTAAKMVEDRCDAVDLNLGCPQMIAKRGHYGAHMMEDWS 156
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
+ ++ R+ +V ++ KIR ++D + T+ YA+MLE AG LL +HGRT DQRG NTG
Sbjct: 157 NIRKMIEEARKVAKVRITAKIRKFEDESITLRYAKMLENAGVSLLTIHGRTRDQRGPNTG 216
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
LA W+ I V++AL +PV+ANGNIQCL + C+ QTGV G+MTAEGNLYNPALF
Sbjct: 217 LADWQIIKKVKEALRVPVVANGNIQCLQNAIDCMEQTGVDGIMTAEGNLYNPALF 271
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 52/81 (64%), Gaps = 12/81 (14%)
Query: 71 DAWTQ----LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE- 125
D W+ L SP+F++APMVDASELPWR+LSRRY + LCYTPM A +I D R+E
Sbjct: 28 DTWSWFRDVLKSPKFVVAPMVDASELPWRVLSRRYSAELCYTPMFHAANYIKDATYRREN 87
Query: 126 ------ILMSTPE-DRPLIIQ 139
+ +PE DRPL +Q
Sbjct: 88 FPDTGDLEQGSPEFDRPLFVQ 108
>gi|308499933|ref|XP_003112152.1| hypothetical protein CRE_29758 [Caenorhabditis remanei]
gi|308268633|gb|EFP12586.1| hypothetical protein CRE_29758 [Caenorhabditis remanei]
Length = 529
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 147/342 (42%), Positives = 200/342 (58%), Gaps = 15/342 (4%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPMVD SEL +RL +R+YG+ L +TPM+ AH F+ D R+ L DRPL++QFC
Sbjct: 76 VLAPMVDQSELAFRLFTRKYGAQLTFTPMIHAHLFVNDGTYRRNSLALVKADRPLVVQFC 135
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
N + A +L E CDG+D+N+GCPQMVAKRG YG++LQD+ L+ +VS++R +
Sbjct: 136 ANKVETFLAACRLVEDVCDGVDLNLGCPQMVAKRGRYGSWLQDEVDLICEMVSAVRDYCK 195
Query: 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL 331
+PVSCKIR+ D +TVEYA+ L AG +L VHGRT D +G TGLA W I V +A+
Sbjct: 196 LPVSCKIRVRDDRQQTVEYAKRLVDAGATMLTVHGRTRDMKGAETGLADWSRIRDVVEAV 255
Query: 332 --TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR--PAWELASEYL 387
+PV+ANGNIQ DVE C+ TG VM+AEG LYNP +F W++A+EYL
Sbjct: 256 GSRVPVMANGNIQFPGDVERCMEATGAVAVMSAEGLLYNPLIFDDSNSHIDTWKIAAEYL 315
Query: 388 DLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI-- 445
++ R HVF +CHH +L E D R+ V + ++D V+ L +R
Sbjct: 316 QYAKKFHAGTSAIRAHVFRICHH--SLLEYEDFRMRVSLEHRVEDFENIVEELGKRATAD 373
Query: 446 ------DYHEGRKLWP-PPNYPMSSNHHNLSLPPWICQPYVR 480
E RKL+ N + P WI +PY R
Sbjct: 374 AEAGKEREEEARKLFELIRNGELMDAIEVSKQPHWISKPYFR 415
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 40/58 (68%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+LAPMVD SEL +RL +R+YG+ L +TPM+ AH F+ D R+ L DRPL++Q
Sbjct: 76 VLAPMVDQSELAFRLFTRKYGAQLTFTPMIHAHLFVNDGTYRRNSLALVKADRPLVVQ 133
>gi|440791671|gb|ELR12909.1| tRNAdihydrouridine synthase 1-like protein [Acanthamoeba
castellanii str. Neff]
Length = 430
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 143/301 (47%), Positives = 191/301 (63%), Gaps = 3/301 (0%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L PR +LAPMVD SELP+R+L R+YG+ LCYTPM + F + K RQ + PEDRP
Sbjct: 94 LRRPRLVLAPMVDMSELPFRMLCRKYGAELCYTPMYHSRLFAEEAKYRQMEFSTCPEDRP 153
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD--WPLLTNLV 263
L++QFCGND + L +AAK E CD +D+N+GCPQ +AKRG+YG++L D WPLL +V
Sbjct: 154 LVVQFCGNDPEVLLKAAKFVENDCDAVDLNLGCPQGIAKRGNYGSFLLDKCYWPLLYAMV 213
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
L + ++VPV CKIR+ ++ T++ ARML+ AGCQLLAVHGRT D +G+ A W+
Sbjct: 214 RKLYENLKVPVFCKIRLLPSLDDTLQLARMLQDAGCQLLAVHGRTRDNKGLYCTPADWDS 273
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I V++AL IPVIANGNI D+E CL T GVM A L NPALF+GQ LA
Sbjct: 274 IRIVKEALAIPVIANGNIAQFEDIEPCLEATRCEGVMAAWAALNNPALFSGQVPDKVALA 333
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYLD+ YP + + R H+ + + E+ R+L T + +R V+ L+ R
Sbjct: 334 IEYLDMCEAYPTQPKSIRAHLCKLLKKQFQIHEDLRERMLT-HTKTLPAIRTLVETLKHR 392
Query: 444 F 444
Sbjct: 393 L 393
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 45/64 (70%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
L PR +LAPMVD SELP+R+L R+YG+ LCYTPM + F + K RQ + PEDRP
Sbjct: 94 LRRPRLVLAPMVDMSELPFRMLCRKYGAELCYTPMYHSRLFAEEAKYRQMEFSTCPEDRP 153
Query: 136 LIIQ 139
L++Q
Sbjct: 154 LVVQ 157
>gi|17507177|ref|NP_492379.1| Protein F36A2.2 [Caenorhabditis elegans]
gi|3876775|emb|CAB03067.1| Protein F36A2.2 [Caenorhabditis elegans]
Length = 527
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 145/342 (42%), Positives = 200/342 (58%), Gaps = 15/342 (4%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPMVD SEL +R+ +R+YG+ L +TPM+ AH F+ D R+ L DRPL++QFC
Sbjct: 76 VLAPMVDQSELAFRMFTRKYGAQLTFTPMIHAHLFVNDGTYRRNSLALVKADRPLVVQFC 135
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
N A +L E CDG+D+N+GCPQMVAKRG YG++LQD+ L+ +VS++R +
Sbjct: 136 ANKVDTFLAACRLVEDVCDGVDLNLGCPQMVAKRGRYGSWLQDEVDLICEMVSAVRDYCR 195
Query: 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL 331
+P+SCKIR+ D +TVEYA+ L AG +L VHGRT D +G TGLA W I V +A+
Sbjct: 196 LPISCKIRVRDDRQQTVEYAKRLVDAGATMLTVHGRTRDMKGAETGLADWSRIRDVVEAV 255
Query: 332 --TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR--PAWELASEYL 387
+PV+ANGNIQ DVE C+ TG +M+AEG LYNP +F W++A+EYL
Sbjct: 256 GSRVPVMANGNIQFPGDVERCMQATGAVAIMSAEGLLYNPLIFDDANAHVDTWKIAAEYL 315
Query: 388 DLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFIDY 447
+ ++ R HVF +CHH +L E D+R+ V + I+D V+ L +R
Sbjct: 316 EYAKKFNAGTSAIRAHVFRICHH--SLLEYEDLRMRVSLEHRIEDFENIVEELAKRAKSD 373
Query: 448 HEGRKLWPPPNYPMSSNHHNLSL---------PPWICQPYVR 480
E K + N N L P WI +PY R
Sbjct: 374 AEAGKNREVEARTLFENIRNGILMNAIEVSKQPHWISKPYFR 415
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 40/58 (68%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+LAPMVD SEL +R+ +R+YG+ L +TPM+ AH F+ D R+ L DRPL++Q
Sbjct: 76 VLAPMVDQSELAFRMFTRKYGAQLTFTPMIHAHLFVNDGTYRRNSLALVKADRPLVVQ 133
>gi|119610149|gb|EAW89743.1| dihydrouridine synthase 1-like (S. cerevisiae), isoform CRA_a [Homo
sapiens]
Length = 415
Score = 284 bits (726), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 133/219 (60%), Positives = 167/219 (76%), Gaps = 2/219 (0%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362
I AVRKA+ IPV ANGNIQCL DVE CL TGV GVM+A
Sbjct: 194 IKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSA 232
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 49/70 (70%), Gaps = 3/70 (4%)
Query: 73 WTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST- 130
W++ L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 10 WSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEV 69
Query: 131 -PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 70 CPEDRPLIVQ 79
>gi|343426744|emb|CBQ70272.1| related to tRNA dihydrouridine synthase [Sporisorium reilianum
SRZ2]
Length = 505
Score = 281 bits (720), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 162/455 (35%), Positives = 235/455 (51%), Gaps = 80/455 (17%)
Query: 64 HSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLR 123
H+ D + +GSPR ++APMVD SELPWR+LSRRYGS L YTPM++A F+ + +
Sbjct: 43 HAKLGSWDFYRSIGSPRRVVAPMVDQSELPWRILSRRYGSDLVYTPMINAKLFVDESSKK 102
Query: 124 QEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSA 183
+++ Q F ++ +G C TP+ +
Sbjct: 103 KKVKY----------QEVNF------------------------NKEHGEEGCSTPIDAL 128
Query: 184 HQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVA 243
+ ST DRPL +Q C ND+ L AA++ E CD +D+N+GCPQ +A
Sbjct: 129 LSCEGEGS-------STDSDRPLFVQLCSNDAATLLRAAQVVEDRCDAVDLNLGCPQHIA 181
Query: 244 KRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLA 303
+RGHYG+YL +DW L+ L+++L +++PV+ K+R+Y+ V+KTV YA++LERAG Q++
Sbjct: 182 RRGHYGSYLMEDWALIFALINTLHLNLKIPVTAKMRVYESVDKTVAYAKLLERAGAQIIT 241
Query: 304 VHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363
VHGRT +G +TGLA W I AV+ A+ +PV ANGN+ D LA TG GVM+AE
Sbjct: 242 VHGRTRSMKGHHTGLADWSKIRAVKAAVRVPVFANGNVLYPQDFGDALAATGADGVMSAE 301
Query: 364 GNLYNPALFTGQ----------TRPAW------ELASEYLDLVA--QYPVRLQYARGHVF 405
GNLYNPA+F + PA LA EYLD+V+ + P + + H+F
Sbjct: 302 GNLYNPAIFVHELPREPSALFPLAPALPFPSIARLAHEYLDIVSALRTPTQSSAIKAHLF 361
Query: 406 NMCHHLLTLPENSDVRLLVGKT---------NHIKDLRKAVDMLRERFIDYHEGRKLWPP 456
+C L + + D+R +GK+ + R VD L R K
Sbjct: 362 RLCRPALEV--HRDLREPLGKSRFDASATGAQRVATYRAFVDELEARLDKDMREEKWTAQ 419
Query: 457 PN----------YPMSSNHHNLSLPPWICQPYVRP 481
P+ PM + +P W+ QPY RP
Sbjct: 420 PDPPLPGSVSQLTPMGEGGRAVYVPHWLAQPYFRP 454
>gi|409084063|gb|EKM84420.1| hypothetical protein AGABI1DRAFT_67813 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 436
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 159/385 (41%), Positives = 219/385 (56%), Gaps = 50/385 (12%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIA-DKKLRQEILMST---- 200
LGSP++I+APMVD SEL WR LSRRYG+ + Y+PM++A F K +EI +T
Sbjct: 18 LGSPKYIVAPMVDQSELAWRKLSRRYGAQVVYSPMINAKMFATQSNKHYREINFNTVYGE 77
Query: 201 ----PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
DRPL++QFC ND L +AK+ E HCD IDIN+GCPQ +AK+G YGAYLQDDW
Sbjct: 78 EGDLTVDRPLVVQFCANDPDQLLASAKIIELHCDAIDINLGCPQDIAKKGKYGAYLQDDW 137
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
L+ L++ L + +PV+ K R++ V KTV YA+MLE AG Q+L HGR +QRG+NT
Sbjct: 138 DLIYKLINILHTNLSIPVTAKFRVFPTVEKTVAYAKMLESAGAQILTCHGRIREQRGVNT 197
Query: 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT 376
GLA W I AV++A+++PV ANGN+ +D+ CL TG GVM+AEG LYNPALF G T
Sbjct: 198 GLADWTKIRAVKEAVSVPVFANGNVLYQSDIFDCLKATGADGVMSAEGQLYNPALFHGLT 257
Query: 377 RPAW----------------------ELASEYLDLV--AQYPVRLQYARGHVFNMCHHLL 412
+ +LA EYLD+V + P + +GH+F + L
Sbjct: 258 SLSTPPPKDTTYLSDEDILLRHPRHCDLAIEYLDIVLSQKTPTMVSAVKGHLFKIMRPGL 317
Query: 413 TLPENSDVRLLVGKT--------NHIKDLRKAVDMLRERF--IDYHEGRKLWPP--PNYP 460
T + D+R +GK ++ + L+ER + G +L P
Sbjct: 318 T--KEKDLRERLGKVRVNPKAPREGYQEYLRICHELKERMERDEKSVGGRLLTELIETEP 375
Query: 461 MSSNHHNLSLPPWICQPYVRPTPEQ 485
++ +P W+ QPY RP P +
Sbjct: 376 VTGIQ---VMPHWLAQPYFRPPPSK 397
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 47/73 (64%), Gaps = 9/73 (12%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIA-DKKLRQEILMST---- 130
LGSP++I+APMVD SEL WR LSRRYG+ + Y+PM++A F K +EI +T
Sbjct: 18 LGSPKYIVAPMVDQSELAWRKLSRRYGAQVVYSPMINAKMFATQSNKHYREINFNTVYGE 77
Query: 131 ----PEDRPLIIQ 139
DRPL++Q
Sbjct: 78 EGDLTVDRPLVVQ 90
>gi|449546042|gb|EMD37012.1| hypothetical protein CERSUDRAFT_114910 [Ceriporiopsis subvermispora
B]
Length = 479
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 158/390 (40%), Positives = 217/390 (55%), Gaps = 57/390 (14%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQF--IADKKLRQEILMST--- 200
LGSP++++APMVD SEL WR LSRRYG+ L YTPM++ + ++ R++ +
Sbjct: 24 LGSPKYVVAPMVDQSELAWRTLSRRYGAQLAYTPMINVKMYADMSHTTFREKNFNTVLGE 83
Query: 201 ---PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
P DRPLI+Q CG+D + + AK E HCD IDIN+GCPQ VA+RGHYG++LQD+W
Sbjct: 84 EGCPADRPLIVQLCGHDPEKMLATAKCLEAHCDAIDINLGCPQDVARRGHYGSFLQDEWD 143
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
L+ L+++L + ++VPV+ K R++ V KTV YA+MLERAG Q+L HGRT +QR G
Sbjct: 144 LIYELINTLHKNLKVPVTAKFRVFPTVEKTVAYAQMLERAGAQILTCHGRTREQRAQKAG 203
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT---- 373
LA W I AV++A+ +PV ANGN+ D+E CL TG VM+AEGNLYNPALF
Sbjct: 204 LADWAKIRAVKQAVKVPVFANGNVLFYGDIEKCLEATGADAVMSAEGNLYNPALFCPAPS 263
Query: 374 --------------------------GQTRPAWELASEYLDLVA--QYPVRLQYARGHVF 405
G P +LA EYLD+V + P +GH+F
Sbjct: 264 LPECSRDASPTSPPPMPTDGPLAGLLGLHPPHAQLAREYLDIVKTQKTPTSPSAVKGHLF 323
Query: 406 NMCHHLLTLPENSDVRLLVGKTNHIKDLR---------KAVDMLR---ERFIDYHEGRKL 453
+ L D+R ++GK HI + + V+ +R ER G+ L
Sbjct: 324 KLMRPALG--REKDLREMLGKA-HINASKGPEAWAPYEEVVEEMRVRMERDAKAAGGKTL 380
Query: 454 WPPPNYPMSSNHHNLSLPPWICQPYVRPTP 483
Y ++ LP W+ QPY RP P
Sbjct: 381 EELITYEPTTGLP--VLPHWLAQPYFRPLP 408
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 8/72 (11%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQF--IADKKLRQEILMST--- 130
LGSP++++APMVD SEL WR LSRRYG+ L YTPM++ + ++ R++ +
Sbjct: 24 LGSPKYVVAPMVDQSELAWRTLSRRYGAQLAYTPMINVKMYADMSHTTFREKNFNTVLGE 83
Query: 131 ---PEDRPLIIQ 139
P DRPLI+Q
Sbjct: 84 EGCPADRPLIVQ 95
>gi|19112778|ref|NP_595986.1| tRNA dihydrouridine synthase Dus1 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74638589|sp|Q9HGN6.1|DUS1_SCHPO RecName: Full=tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 1
gi|9967699|emb|CAC05725.1| tRNA dihydrouridine synthase Dus1 (predicted) [Schizosaccharomyces
pombe]
Length = 399
Score = 281 bits (718), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 141/363 (38%), Positives = 226/363 (62%), Gaps = 23/363 (6%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL-- 197
R + ++G P+ ILAPMVD SELPWR+L+RR G+ LCY+PM + F + R ++
Sbjct: 9 RDFYNKIGRPKRILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRNKVFST 68
Query: 198 MSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
+ PE+RPLIIQFCGND + + +AAK+A P+CD +D+N+GCPQ +AK+G YG++LQ++W
Sbjct: 69 RTIPEERPLIIQFCGNDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFLQENWN 128
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
L+ ++++ L + +PV+ KIRI+ D KT++YA+M+ +AG +LAVHGR +Q+G TG
Sbjct: 129 LIESIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMILKAGASILAVHGRLREQKGHFTG 188
Query: 318 LASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375
+A WE I +RK L + ANGNI D++ C+ TGV GV++AEG+LYNP +F
Sbjct: 189 IADWEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRIFLPP 248
Query: 376 TRPAW-------ELASEYLDLVAQYPVRLQYA-----RGHVFNMCHHLLTLPENSDVRLL 423
+ P ++ EYL+++ ++ + Y+ +GH+F + LL++ ++D+R
Sbjct: 249 SSPLMTLYPRIDDMCEEYLNIIREFKLESDYSSLSAIKGHLFKLMRPLLSI--HTDIRSK 306
Query: 424 VGKTNHIKDLRK---AVDMLRERFIDYHEGRKLWPPPNYPMS--SNHHNLSLPPWICQPY 478
+ + +D V MLR+R ++ E ++ + S + +P W QPY
Sbjct: 307 LAQGCTPRDFETFPPVVAMLRKRLLECEEKGEINEDKDVKESVKDSMGYPVIPWWRVQPY 366
Query: 479 VRP 481
+RP
Sbjct: 367 IRP 369
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
Query: 71 DAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL--M 128
D + ++G P+ ILAPMVD SELPWR+L+RR G+ LCY+PM + F + R ++
Sbjct: 10 DFYNKIGRPKRILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRNKVFSTR 69
Query: 129 STPEDRPLIIQ 139
+ PE+RPLIIQ
Sbjct: 70 TIPEERPLIIQ 80
>gi|268566179|ref|XP_002639655.1| Hypothetical protein CBG12371 [Caenorhabditis briggsae]
Length = 527
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 146/345 (42%), Positives = 201/345 (58%), Gaps = 21/345 (6%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPMVD SEL +RL +R+YG+ L +TPM+ AH F+ D R+ L DRPL++QFC
Sbjct: 76 VLAPMVDQSELAFRLFTRKYGAQLTFTPMIHAHLFVNDGTYRRNALALVKADRPLVVQFC 135
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
N A +L E CDG+D+N+GCPQMVAKRG YG++LQD+ L+ +VS++R +
Sbjct: 136 ANKVDTFLAACRLVEDVCDGVDLNLGCPQMVAKRGRYGSWLQDEVDLICEMVSAVRDYCK 195
Query: 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL 331
+PVSCKIR+ D +T+ YA L AG +L VHGRT D +G TGLA W I V +A+
Sbjct: 196 IPVSCKIRVRDDRQETISYATRLVDAGATMLTVHGRTRDMKGAETGLADWTRIRDVVEAV 255
Query: 332 T--IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR--PAWELASEYL 387
+PV+ANGNIQ DVE C+ TG VM+AEG LYNP +F W++A+EYL
Sbjct: 256 GSRVPVMANGNIQFPGDVERCMEATGAVAVMSAEGLLYNPLIFDDANAHVETWKIAAEYL 315
Query: 388 DLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDML------- 440
+ + R HVF +CHH +L E D+R+ V + ++D V+ L
Sbjct: 316 EYARDFHAGTSAIRAHVFRICHH--SLLEYEDLRMRVSLEHRVEDFENIVEELGKRARAD 373
Query: 441 ----RERFIDYHEGRKLWPPPNYPMSSNHHNLSLPP-WICQPYVR 480
+ER + E RKL+ + +S P WI +PY R
Sbjct: 374 AEAGKEREV---EARKLFESIRNGQLMDAIEVSKQPHWISKPYFR 415
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 40/58 (68%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+LAPMVD SEL +RL +R+YG+ L +TPM+ AH F+ D R+ L DRPL++Q
Sbjct: 76 VLAPMVDQSELAFRLFTRKYGAQLTFTPMIHAHLFVNDGTYRRNALALVKADRPLVVQ 133
>gi|71004722|ref|XP_757027.1| hypothetical protein UM00880.1 [Ustilago maydis 521]
gi|46096397|gb|EAK81630.1| hypothetical protein UM00880.1 [Ustilago maydis 521]
Length = 527
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 157/405 (38%), Positives = 225/405 (55%), Gaps = 67/405 (16%)
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM--- 198
+ +GSPR ++APMVD SEL WR+LSRRYGS L YTPM++A F + ++++
Sbjct: 42 FYRSIGSPRRVVAPMVDQSELAWRILSRRYGSDLVYTPMINAKLFADENSKKKKVKYQEV 101
Query: 199 --------------------------STPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGI 232
S DRPL +QFC ND + L +AAK+ E CD +
Sbjct: 102 NFNREHAEEGASSPIASLLSNEGEGSSKDTDRPLFVQFCSNDPETLLKAAKVVEDRCDAV 161
Query: 233 DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYAR 292
D+N+GCPQ +A+RGHYG+YL +DW L+ +L++ L ++VPV+ K+R+Y+ V KT+ YAR
Sbjct: 162 DLNLGCPQHIARRGHYGSYLMEDWSLIFSLINILHVNLKVPVTAKMRVYESVEKTITYAR 221
Query: 293 MLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLA 352
+LERAG Q++ VHGRT + +G TGLA W I AV++A+ +PV ANGN+ D LA
Sbjct: 222 LLERAGAQIITVHGRTRNMKGHLTGLADWAKIRAVKEAVNVPVFANGNVLYPQDFYDALA 281
Query: 353 QTGVAGVMTAEGNLYNPALFTGQ--TRPAW--------------ELASEYLDLVA--QYP 394
TG GVM+AEGNLYNPA+ +P+ ++A EYLD+V + P
Sbjct: 282 ATGADGVMSAEGNLYNPAIMLPNPPKQPSAMFPNAPELPLPSIVKMAHEYLDIVCSLRTP 341
Query: 395 VRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT---------NHIKDLRKAVDMLRERF- 444
+ + H+F +C L + + D+R +GK+ + I R VD L R
Sbjct: 342 TQSSAIKAHLFRLCRPALEV--HRDLREQLGKSHFDHTASGADKIVTYRAFVDELERRLQ 399
Query: 445 IDYHEGRKL-WPPPNYPMSSNH-------HNLSLPPWICQPYVRP 481
+D H+ + L P P P S +H +P W+ QPY RP
Sbjct: 400 VDMHDVKWLTQPEPPLPGSVSHLTQPGEGRPAYVPHWLAQPYFRP 444
>gi|302795500|ref|XP_002979513.1| hypothetical protein SELMODRAFT_444257 [Selaginella moellendorffii]
gi|300152761|gb|EFJ19402.1| hypothetical protein SELMODRAFT_444257 [Selaginella moellendorffii]
Length = 378
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 144/286 (50%), Positives = 186/286 (65%), Gaps = 22/286 (7%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
R+G+P+F++APMVD SELP+R+L R+YG+ YTPM+ A F D+K R + PEDR
Sbjct: 48 RIGAPKFMVAPMVDQSELPFRMLCRKYGATGAYTPMLHARLFSEDRKYRNYEFTTCPEDR 107
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PL+IQFC N+ L AAKL EP CD IDIN+GCPQ +AKRG+YGA+L DD PL+ LV+
Sbjct: 108 PLLIQFCANNPDTLLAAAKLVEPFCDYIDINLGCPQRIAKRGNYGAFLMDDLPLVQALVT 167
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
L + VPVSCKIR++ ++ T+ YA+MLE +GC LLAVHGRT +Q+ T A WE I
Sbjct: 168 KLVSNLDVPVSCKIRMFPSLDDTISYAKMLESSGCSLLAVHGRTREQKCSRTVRADWEVI 227
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG--QTRPA--- 379
AV++AL IPV+ANGNI+ L D E C+ +TGV GV++AE L NPALF G +P+
Sbjct: 228 RAVKQALRIPVLANGNIRSLEDAERCIQETGVDGVLSAESLLENPALFAGYRTFKPSDSE 287
Query: 380 -------------WELASEYLDLVAQYPVRLQYARGHVFNMCHHLL 412
L EYLD +YP + R HV H LL
Sbjct: 288 DDEQGSSKLMIDPVTLLMEYLDQCEKYPAPDKCIRAHV----HRLL 329
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 50/69 (72%)
Query: 71 DAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
D W ++G+P+F++APMVD SELP+R+L R+YG+ YTPM+ A F D+K R +
Sbjct: 44 DHWRRIGAPKFMVAPMVDQSELPFRMLCRKYGATGAYTPMLHARLFSEDRKYRNYEFTTC 103
Query: 131 PEDRPLIIQ 139
PEDRPL+IQ
Sbjct: 104 PEDRPLLIQ 112
>gi|15240243|ref|NP_201523.1| tRNA-dihydrouridine synthase 4 [Arabidopsis thaliana]
gi|10177609|dbj|BAB10956.1| unnamed protein product [Arabidopsis thaliana]
gi|15146316|gb|AAK83641.1| AT5g67220/K21H1_18 [Arabidopsis thaliana]
gi|20908082|gb|AAM26724.1| AT5g67220/K21H1_18 [Arabidopsis thaliana]
gi|332010932|gb|AED98315.1| tRNA-dihydrouridine synthase 4 [Arabidopsis thaliana]
Length = 423
Score = 278 bits (712), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 140/315 (44%), Positives = 191/315 (60%), Gaps = 17/315 (5%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
+LG P++I+APMVD SELP+RLL ++YG+ YTPM+ + F +K R + + EDR
Sbjct: 84 KLGRPKYIVAPMVDNSELPFRLLCQKYGAQAAYTPMLHSRIFTETEKYRNQEFTTCKEDR 143
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PL +QFC ND L EAAK EP+CD +DIN+GCPQ +A+RG+YGA+L D+ PL+ +LV
Sbjct: 144 PLFVQFCANDPDTLLEAAKRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVE 203
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
L Q + VPVSCKIRI+ ++ T++YA+MLE AGC LLAVHGRT D++ A W I
Sbjct: 204 KLAQNLNVPVSCKIRIFPNLEDTLKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWSAI 263
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW---- 380
V+ A+ IPV+ANGN++C+ DV+ C+ +TGV GV++AE L NPA F G W
Sbjct: 264 KEVKNAMRIPVLANGNVRCIEDVDNCIKETGVEGVLSAETLLENPAAFAGFRTAEWAKDN 323
Query: 381 -------------ELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT 427
+L EYL L ++PV + R HV M + +L
Sbjct: 324 EEEGFVDGGLDQGDLVVEYLKLCEKHPVPWRMIRSHVHKMLGEWFRIHPQVREQLNAQNI 383
Query: 428 NHIKDLRKAVDMLRE 442
+ L VD LRE
Sbjct: 384 LTFEFLYGLVDQLRE 398
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
W +LG P++I+APMVD SELP+RLL ++YG+ YTPM+ + F +K R + + E
Sbjct: 82 WKKLGRPKYIVAPMVDNSELPFRLLCQKYGAQAAYTPMLHSRIFTETEKYRNQEFTTCKE 141
Query: 133 DRPLIIQ 139
DRPL +Q
Sbjct: 142 DRPLFVQ 148
>gi|357123723|ref|XP_003563557.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Brachypodium
distachyon]
Length = 424
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 138/276 (50%), Positives = 179/276 (64%), Gaps = 13/276 (4%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
RLG+PR ++APMVD SELP+R+L RRYG+ YTPM+ + F ++K R + EDR
Sbjct: 85 RLGAPRLVVAPMVDNSELPFRMLCRRYGADAAYTPMLHSRIFSENEKNRNMEFTTCKEDR 144
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PL +QFC ND L +AAK+ EPHCD +DIN GCPQ +A+RG+YGA+L D+ PL+ +LV
Sbjct: 145 PLFVQFCANDPDILLQAAKIVEPHCDYVDINFGCPQRIARRGYYGAFLMDNLPLVKSLVQ 204
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
+L + VPVSCKIRI+ + T+ YARMLE AG L+AVHGRT D++ A W+ I
Sbjct: 205 NLSANLHVPVSCKIRIFPRLEDTLAYARMLEEAGASLVAVHGRTRDEKDGKKFRADWDAI 264
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW---- 380
AV+ AL IPV+ANGNI+ + DV+ CL TG G+++AE L NPALF G W
Sbjct: 265 KAVKDALRIPVLANGNIRHMEDVKNCLEHTGADGILSAEPLLENPALFAGFRTKEWKEDE 324
Query: 381 ---------ELASEYLDLVAQYPVRLQYARGHVFNM 407
+LA EYL L QYPV + R HV M
Sbjct: 325 DKDSGLDQTDLAIEYLKLCEQYPVPWRMIRSHVHKM 360
Score = 75.5 bits (184), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 46/67 (68%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
W +LG+PR ++APMVD SELP+R+L RRYG+ YTPM+ + F ++K R + E
Sbjct: 83 WRRLGAPRLVVAPMVDNSELPFRMLCRRYGADAAYTPMLHSRIFSENEKNRNMEFTTCKE 142
Query: 133 DRPLIIQ 139
DRPL +Q
Sbjct: 143 DRPLFVQ 149
>gi|302792084|ref|XP_002977808.1| hypothetical protein SELMODRAFT_443602 [Selaginella moellendorffii]
gi|300154511|gb|EFJ21146.1| hypothetical protein SELMODRAFT_443602 [Selaginella moellendorffii]
Length = 378
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 144/286 (50%), Positives = 186/286 (65%), Gaps = 22/286 (7%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
R+G+P+F++APMVD SELP+R+L R+YG+ YTPM+ A F D+K R + PEDR
Sbjct: 48 RIGAPKFMVAPMVDQSELPFRMLCRKYGATGAYTPMLHARLFSEDRKYRNYEFTTCPEDR 107
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PL+IQFC N+ L AAKL EP CD IDIN+GCPQ +AKRG+YGA+L DD PL+ LV+
Sbjct: 108 PLLIQFCANNPDTLLAAAKLVEPFCDYIDINLGCPQRIAKRGNYGAFLMDDLPLVQALVT 167
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
L + VPVSCKIR++ ++ T+ YA+MLE +GC LLAVHGRT +Q+ T A WE I
Sbjct: 168 KLVSNLDVPVSCKIRMFPSLDDTISYAKMLESSGCSLLAVHGRTREQKCSRTVRADWEVI 227
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG--QTRPA--- 379
AV++AL IPV+ANGNI+ L D E C+ +TGV GV++AE L NPALF G +P+
Sbjct: 228 RAVKQALRIPVLANGNIRWLEDAERCIQETGVDGVLSAESLLENPALFAGYRTFKPSDSE 287
Query: 380 -------------WELASEYLDLVAQYPVRLQYARGHVFNMCHHLL 412
L EYLD +YP + R HV H LL
Sbjct: 288 DEEQGSSKLMIDPVTLLMEYLDQCEKYPAPDKCIRAHV----HRLL 329
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 50/69 (72%)
Query: 71 DAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
D W ++G+P+F++APMVD SELP+R+L R+YG+ YTPM+ A F D+K R +
Sbjct: 44 DHWRRIGAPKFMVAPMVDQSELPFRMLCRKYGATGAYTPMLHARLFSEDRKYRNYEFTTC 103
Query: 131 PEDRPLIIQ 139
PEDRPL+IQ
Sbjct: 104 PEDRPLLIQ 112
>gi|50547431|ref|XP_501185.1| YALI0B21516p [Yarrowia lipolytica]
gi|49647051|emb|CAG83438.1| YALI0B21516p [Yarrowia lipolytica CLIB122]
Length = 423
Score = 278 bits (710), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 143/363 (39%), Positives = 208/363 (57%), Gaps = 28/363 (7%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM- 198
R +F +LG P+ I+APMVD SEL WR+LSRR+G+ LCYTPM A F ++ R+E+
Sbjct: 19 RQLFEKLGKPKTIVAPMVDQSELAWRILSRRHGADLCYTPMFHAKLFGTSERYREEMFGP 78
Query: 199 ---STPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
DRPL++QFC ND L AAKL E CD +D+N+GCPQ +A++GHYG++L +D
Sbjct: 79 MDGDQTTDRPLVVQFCANDPDELLAAAKLVEDRCDAVDLNLGCPQGIARKGHYGSFLMED 138
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
W L+ L++ L ++VPV+ K+R++ D +KT+EYA+M+ AG Q L +HGRT + +G
Sbjct: 139 WDLIHKLINKLHLELKVPVTAKMRVFDDRDKTLEYAKMIINAGAQFLTIHGRTREMKGQQ 198
Query: 316 TGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
TGLA WE I VR+ L V ANGN+ D+E C+ +T VM+AEGNLYNPA+F
Sbjct: 199 TGLADWEIIKYVRENLPKDTVVFANGNVLYSEDIEKCMEETTTDAVMSAEGNLYNPAIFN 258
Query: 374 GQTRP------AWELASEYLDLVAQYPVRLQYA--RGHVFNMCHHLLTLPENSDVRLLVG 425
T ++ EY ++V + P + + H F + H LP +++R +G
Sbjct: 259 KPTDKDVNFPRVDKMLREYFEIVKETPGKASNTAMKSHFFKILHSF--LPVETELRAEIG 316
Query: 426 KTNH--IKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSSNHHNL------SLPPWICQP 477
+T+ K V + E+ +E P N + ++P W CQP
Sbjct: 317 RTSKAGFDVWEKIVQKVEEKVAKIYED----PNVNDEVVIGEEEAWGGAYRTVPYWRCQP 372
Query: 478 YVR 480
Y R
Sbjct: 373 YFR 375
Score = 75.1 bits (183), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL----M 128
+ +LG P+ I+APMVD SEL WR+LSRR+G+ LCYTPM A F ++ R+E+
Sbjct: 22 FEKLGKPKTIVAPMVDQSELAWRILSRRHGADLCYTPMFHAKLFGTSERYREEMFGPMDG 81
Query: 129 STPEDRPLIIQ 139
DRPL++Q
Sbjct: 82 DQTTDRPLVVQ 92
>gi|297794265|ref|XP_002865017.1| nitrogen regulation family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297310852|gb|EFH41276.1| nitrogen regulation family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 423
Score = 278 bits (710), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 140/315 (44%), Positives = 190/315 (60%), Gaps = 17/315 (5%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
+LG P++I+APMVD SELP+RLL ++YG+ YTPM+ + F +K R + + EDR
Sbjct: 84 KLGRPKYIVAPMVDNSELPFRLLCQKYGAQAAYTPMLHSRIFTETEKYRNQEFTTCKEDR 143
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PL +QFC ND L EAAK EP+CD +DIN+GCPQ +A+RG+YGA+L D+ PL+ +LV
Sbjct: 144 PLFVQFCANDPDTLLEAAKRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVE 203
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
L Q + VPVSCKIRI+ ++ T++YA+MLE AGC LLAVHGRT D++ A W I
Sbjct: 204 KLAQNLNVPVSCKIRIFPNLQDTLKYAKMLEDAGCSLLAVHGRTRDEKDGKKLRADWSAI 263
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW---- 380
V+ AL IPV+ NGN++C+ DV+ C+ +TGV GV++AE L NPA F G W
Sbjct: 264 KEVKNALRIPVLGNGNVRCIEDVDNCIKETGVEGVLSAETLLENPAAFAGFRTAEWVSEN 323
Query: 381 -------------ELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT 427
+L EYL L ++PV + R HV M + +L
Sbjct: 324 EEEGFVDGGLDQGDLVVEYLKLCEKHPVPWRMIRSHVHKMLGEWFRIHPQVREQLNAQNI 383
Query: 428 NHIKDLRKAVDMLRE 442
+ L VD LRE
Sbjct: 384 LTFEFLYGLVDQLRE 398
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 46/67 (68%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
W +LG P++I+APMVD SELP+RLL ++YG+ YTPM+ + F +K R + + E
Sbjct: 82 WKKLGRPKYIVAPMVDNSELPFRLLCQKYGAQAAYTPMLHSRIFTETEKYRNQEFTTCKE 141
Query: 133 DRPLIIQ 139
DRPL +Q
Sbjct: 142 DRPLFVQ 148
>gi|389739275|gb|EIM80469.1| Dus-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 515
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 159/418 (38%), Positives = 228/418 (54%), Gaps = 83/418 (19%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQF-IADKKLRQEILMST---- 200
LGSP++I APMVD SEL WR LSRRYG + YTPM++A F + ++K +E+ +T
Sbjct: 24 LGSPKYIGAPMVDQSELAWRKLSRRYGVQVAYTPMINAKMFSMNNRKPYRELAFNTVLGE 83
Query: 201 ---PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
P DRPLI+QFC ND + L +AK+ E HCD IDIN+GCPQ +AK+G YG++LQD+W
Sbjct: 84 EGGPGDRPLIVQFCANDPEQLLTSAKVLESHCDAIDINLGCPQDIAKKGRYGSFLQDEWD 143
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
L+ ++++L + + +PV+ K R++ + KTVEYA+MLERAG Q+L HGRT +QRG ++G
Sbjct: 144 LIFKMINTLHENLSIPVTAKFRVFPSLEKTVEYAKMLERAGAQILTCHGRTREQRGHHSG 203
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF----- 372
LA W I AV++A+ +PV ANGNI +D+ CL +TG GVM+AEG LYN ALF
Sbjct: 204 LADWAKIRAVKEAVKVPVFANGNILFHSDIARCLEETGADGVMSAEGQLYNAALFAPAIP 263
Query: 373 -------------------------------TGQTRPAWELASEYLDLVA--QYPVRLQY 399
TG LA +YLD+V + P
Sbjct: 264 LTLHTSEPESSDSPPSAEPSPSSPSSPPVFDTGLHPIHTTLAFQYLDIVKTQKTPTAPSA 323
Query: 400 ARGHVFNMCHHLLTLPENSDVRL--LVGKTNH--------------IKDLRKAV-DMLRE 442
+GH+F + L ++ RL ++GK ++D+++A+ + L E
Sbjct: 324 IKGHLFKILRPALNREKDLRERLGRIIGKDQFSVYHAIVEELHVRMVRDVKEALGEALGE 383
Query: 443 RFIDYHEGRKLWPPPNYPMSSNHHNL----------------SLPPWICQPYVRPTPE 484
R++ G S N +L +LP W+ QPY RP P+
Sbjct: 384 RYLKIQSGEA----GTGIESLNDDDLRILGDLVATDASTSLKTLPHWVAQPYFRPPPK 437
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 8/72 (11%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQF-IADKKLRQEILMST---- 130
LGSP++I APMVD SEL WR LSRRYG + YTPM++A F + ++K +E+ +T
Sbjct: 24 LGSPKYIGAPMVDQSELAWRKLSRRYGVQVAYTPMINAKMFSMNNRKPYRELAFNTVLGE 83
Query: 131 ---PEDRPLIIQ 139
P DRPLI+Q
Sbjct: 84 EGGPGDRPLIVQ 95
>gi|356563594|ref|XP_003550046.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Glycine max]
Length = 377
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 139/288 (48%), Positives = 182/288 (63%), Gaps = 16/288 (5%)
Query: 143 FPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 202
+ +LG PRFI+APMVD SELP+R+L R+YG+ YTPM+ + F +K R E + E
Sbjct: 40 WAKLGRPRFIVAPMVDNSELPFRMLCRKYGAQGAYTPMLHSRIFTETEKYRNEEFTTCKE 99
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
DRPL +QFC ND L AA+ EP CD +DIN+GCPQ +AKRG+YGA+L D+ PL+ +L
Sbjct: 100 DRPLFVQFCANDPDVLLAAARKVEPFCDYVDINLGCPQRIAKRGYYGAFLMDNLPLVKSL 159
Query: 263 VSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
V L +QVPVSCKIR++ ++ T++YARMLE AGC LLAVHGRT D++ A W
Sbjct: 160 VEKLAVNLQVPVSCKIRLFPNLEDTLKYARMLEEAGCMLLAVHGRTRDEKDGKKFRADWN 219
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW-- 380
I AV+ A+ IPV+ANGNI+ + DV CL +TGV GV++AE L NPALF G W
Sbjct: 220 AIRAVKNAVRIPVLANGNIRHMDDVRDCLEETGVEGVLSAETLLENPALFDGFRTAEWVS 279
Query: 381 --------------ELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTL 414
+L EYL L +YPV + R HV + +L
Sbjct: 280 ESEGTNLDGKLDQADLLIEYLKLCEKYPVPWRMIRSHVHKLLGDWFSL 327
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 106/231 (45%), Gaps = 35/231 (15%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
W +LG PRFI+APMVD SELP+R+L R+YG+ YTPM+ + F +K R E + E
Sbjct: 40 WAKLGRPRFIVAPMVDNSELPFRMLCRKYGAQGAYTPMLHSRIFTETEKYRNEEFTTCKE 99
Query: 133 DRPLIIQRTIFPRLGSPRFILA------PMVDASEL----PWRLLSR-RYGSHLCYT-PM 180
DRPL +Q P +LA P D ++ P R+ R YG+ L P+
Sbjct: 100 DRPLFVQFCA----NDPDVLLAAARKVEPFCDYVDINLGCPQRIAKRGYYGAFLMDNLPL 155
Query: 181 VSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQ 240
V K L +++ ++ I+ N L A L E C + ++
Sbjct: 156 V--------KSLVEKLAVNLQVPVSCKIRLFPNLEDTLKYARMLEEAGCMLLAVH----- 202
Query: 241 MVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPV--SCKIRIYQDVNKTVE 289
+ G + DW N + +++ AV++PV + IR DV +E
Sbjct: 203 GRTRDEKDGKKFRADW----NAIRAVKNAVRIPVLANGNIRHMDDVRDCLE 249
>gi|356514252|ref|XP_003525820.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Glycine max]
Length = 542
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 139/286 (48%), Positives = 182/286 (63%), Gaps = 16/286 (5%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
+LG PRFI+APMVD SELP+R+L R+YG+ YTPM+ + F +K R E + EDR
Sbjct: 207 KLGRPRFIVAPMVDNSELPFRMLCRKYGAQGAYTPMLHSRIFTETEKYRNEEFTTCKEDR 266
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PL +QFC ND L EAA+ E CD +DIN+GCPQ +AKRG+YGA+L D+ PL+ +LV
Sbjct: 267 PLFVQFCANDPDVLLEAARKVERFCDYVDINLGCPQRIAKRGYYGAFLMDNLPLVKSLVE 326
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
L +QVPVSCKIR++ ++ T++YARMLE AGC LLAVHGRT D++ A W+ I
Sbjct: 327 KLAVNLQVPVSCKIRLFPNLEDTLKYARMLEEAGCMLLAVHGRTRDEKDGKKFRADWKAI 386
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW---- 380
AV+ A+ IPV+ANGNI+ + DV CL +TGV GV++AE L NPALF G W
Sbjct: 387 RAVKNAVRIPVLANGNIRHIDDVRDCLEETGVEGVLSAETLLENPALFAGFRTAEWVSES 446
Query: 381 ------------ELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTL 414
+L EYL L +YPV + R HV + +L
Sbjct: 447 EGTNVDGKLDQADLLIEYLKLCEKYPVPWRMIRSHVHKLLGDWFSL 492
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 47/67 (70%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
WT+LG PRFI+APMVD SELP+R+L R+YG+ YTPM+ + F +K R E + E
Sbjct: 205 WTKLGRPRFIVAPMVDNSELPFRMLCRKYGAQGAYTPMLHSRIFTETEKYRNEEFTTCKE 264
Query: 133 DRPLIIQ 139
DRPL +Q
Sbjct: 265 DRPLFVQ 271
>gi|303390091|ref|XP_003073277.1| tRNA-dihydrouridine synthase [Encephalitozoon intestinalis ATCC
50506]
gi|303302422|gb|ADM11917.1| tRNA-dihydrouridine synthase [Encephalitozoon intestinalis ATCC
50506]
Length = 341
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 130/279 (46%), Positives = 178/279 (63%), Gaps = 4/279 (1%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK--LRQEIL 197
R + + P +APMV SE WR LS+R+G++L YT MV F+ + ++
Sbjct: 2 RRFWEEIQKPYLAVAPMVGNSEEAWRRLSKRHGANLFYTEMVHCESFLRGSRNPVKNRWY 61
Query: 198 MSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
++ DRPL+IQ CGN K + EAA + + HCD IDIN GCPQ VA++G YGAYLQ++W
Sbjct: 62 TTSESDRPLVIQICGNSPKTMLEAALIMQNHCDAIDINFGCPQKVARKGGYGAYLQENWD 121
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
L +V L + VPVSCKIR+++ + KTVEYA+M+E+AGC LLAVHGRT DQ+G G
Sbjct: 122 LTERIVKVLSTGLNVPVSCKIRVFESIEKTVEYAKMIEKAGCSLLAVHGRTRDQKGPAMG 181
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
LASW+HI AV++ L IPV++NGNI DV CL T GVM E +LYNP +FTG+ +
Sbjct: 182 LASWDHIKAVKENLKIPVLSNGNIMTHEDVWKCLEYTKCDGVMVGEAHLYNPLIFTGENK 241
Query: 378 PAWELASEYLDLVAQYP--VRLQYARGHVFNMCHHLLTL 414
E+ EYLD+ + P + + H+F + H T+
Sbjct: 242 SCLEIIREYLDICMESPGCAETGHIKSHMFKLLHSYFTI 280
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK--LRQEILMST 130
W ++ P +APMV SE WR LS+R+G++L YT MV F+ + ++ ++
Sbjct: 5 WEEIQKPYLAVAPMVGNSEEAWRRLSKRHGANLFYTEMVHCESFLRGSRNPVKNRWYTTS 64
Query: 131 PEDRPLIIQ 139
DRPL+IQ
Sbjct: 65 ESDRPLVIQ 73
>gi|443895561|dbj|GAC72907.1| tRNA-dihydrouridine synthase [Pseudozyma antarctica T-34]
Length = 518
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 156/413 (37%), Positives = 221/413 (53%), Gaps = 74/413 (17%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL-------- 197
+GSP+ ++APMVD SEL WR+LSRRYG+ L YTPM++A F+ + ++++
Sbjct: 49 IGSPKRVVAPMVDQSELAWRVLSRRYGADLVYTPMINAKLFVDENSKKKKVKYQEVNFNR 108
Query: 198 ------------------MSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCP 239
S+ DRPL +QFC ND L +AA++ + CD +D+N+GCP
Sbjct: 109 EFGEEGGASIASLLSEEGASSDTDRPLFVQFCSNDPATLLKAAEVVQDRCDAVDLNLGCP 168
Query: 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC 299
Q +A+RGHYG+YL +DW L+ L++ L +++PV+ K+R+Y+ V+KTV YARMLERAG
Sbjct: 169 QHIARRGHYGSYLMEDWQLIFALINILHLNLRIPVTAKMRVYETVDKTVAYARMLERAGA 228
Query: 300 QLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359
Q++ VHGRT +G +TGLA W I AV++A+ +PV ANGN+ D + L QT GV
Sbjct: 229 QIITVHGRTRSMKGHHTGLADWAKIKAVKEAVRVPVFANGNVLYPQDWQDALQQTTADGV 288
Query: 360 MTAEGNLYNPALFTGQTRPA----------------WELASEYLDLVAQY--PVRLQYAR 401
M+AEGNLYNPA+F A +A EYLD+V Q P +
Sbjct: 289 MSAEGNLYNPAVFMPSLPRAPSAMFPNAPQLPFPSLARMAHEYLDIVTQLRTPTSSSAIK 348
Query: 402 GHVFNMCHHLLTLPENSDVRLLVGKTN---------HIKDLRKAVDMLRERFIDYHEGRK 452
H+F +C L + + D+R +GK+ I R V L ER +D
Sbjct: 349 AHLFRLCRPGLEV--HRDLREALGKSRFDHTATGEARIATYRAFVTEL-ERRLDLDRVED 405
Query: 453 LW---------------PPPNYPMSSNHHNLSLPPWICQPYVRP---TPEQQE 487
W PP+ H +P W+ QPY RP T EQQ+
Sbjct: 406 KWNKPQDPPLPGSVSFLTPPDPSKPDKHRPAFIPHWLAQPYFRPPLVTDEQQD 458
>gi|224094282|ref|XP_002310123.1| predicted protein [Populus trichocarpa]
gi|222853026|gb|EEE90573.1| predicted protein [Populus trichocarpa]
Length = 358
Score = 275 bits (702), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 132/264 (50%), Positives = 178/264 (67%), Gaps = 1/264 (0%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
+LG P+ I+APMVD SELP+R+L R+YG+ YTPM+ + F ++K R+E + EDR
Sbjct: 80 KLGRPKLIVAPMVDNSELPFRMLCRKYGAEAAYTPMLHSRIFSENEKYRREEFTTCKEDR 139
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PL +QFC ND L +AA+ EP+CD +DIN+GCPQ +A+RG+YGA+L D+ L+ +LV
Sbjct: 140 PLFVQFCANDPDILLQAARRVEPYCDYVDINLGCPQRIARRGYYGAFLMDNLLLVKSLVE 199
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
L + VPVSCKIR++ + T+ YARMLE AGC LLAVHGRT D++ A W+ I
Sbjct: 200 KLAINLNVPVSCKIRVFPKLEDTINYARMLEEAGCSLLAVHGRTRDEKDGKKFRADWKAI 259
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW-ELA 383
AV+ AL IPV+ANGNI+ + DV+ CL +TG GV++AE L NPALF G W +L
Sbjct: 260 KAVKSALRIPVLANGNIRHMDDVKTCLEETGTDGVLSAETLLENPALFAGFRTAEWADLL 319
Query: 384 SEYLDLVAQYPVRLQYARGHVFNM 407
EYL ++PV + R HV M
Sbjct: 320 VEYLKFCERHPVPWRMIRSHVHKM 343
Score = 82.0 bits (201), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 70/121 (57%), Gaps = 6/121 (4%)
Query: 23 LVTSMELHRHSPVAHPPNPIPQECHSPAARCKGTNVVPKDCHSSTARSDA----WTQLGS 78
+ TS++L+ SP ++P E H ++ P+ S AR + W++LG
Sbjct: 26 MATSLDLNDDSPCSNPQQQ-QTETHENSSETALLGE-PRGYLSGEARVERAWGHWSKLGR 83
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P+ I+APMVD SELP+R+L R+YG+ YTPM+ + F ++K R+E + EDRPL +
Sbjct: 84 PKLIVAPMVDNSELPFRMLCRKYGAEAAYTPMLHSRIFSENEKYRREEFTTCKEDRPLFV 143
Query: 139 Q 139
Q
Sbjct: 144 Q 144
>gi|449468305|ref|XP_004151862.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Cucumis sativus]
gi|449484028|ref|XP_004156763.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Cucumis sativus]
Length = 426
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 134/279 (48%), Positives = 180/279 (64%), Gaps = 16/279 (5%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
+LG P+ I+APMVD SELP+RLL R+YG+ YTPM+ + F ++K R + EDR
Sbjct: 92 KLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYRNMEFTTCQEDR 151
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PL +QFC ND L EAA+ EP+CD +D+N+GCPQ +A+RG+YGA+L D+ PL+ +V
Sbjct: 152 PLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLMDNLPLVKAIVE 211
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
L +QVPVSCKIRI+ ++ T+ YARMLE AGC LLAVHGRT D++ A+W I
Sbjct: 212 KLASNLQVPVSCKIRIFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRANWSAI 271
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW---- 380
+AV+ A+ IPV+ANGNI+ + DV CL +TGV GV++AE L NPALF G W
Sbjct: 272 SAVKNAVRIPVLANGNIRHMEDVNDCLQETGVEGVLSAETLLENPALFAGFRTAEWIEGH 331
Query: 381 ------------ELASEYLDLVAQYPVRLQYARGHVFNM 407
+L +YL L +YPV + R HV +
Sbjct: 332 EENTRDGNLDQADLLVDYLKLCEKYPVPWRMIRSHVHKL 370
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 46/67 (68%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
WT+LG P+ I+APMVD SELP+RLL R+YG+ YTPM+ + F ++K R + E
Sbjct: 90 WTKLGRPKLIVAPMVDNSELPFRLLCRKYGAEAAYTPMLHSRIFTENEKYRNMEFTTCQE 149
Query: 133 DRPLIIQ 139
DRPL +Q
Sbjct: 150 DRPLFVQ 156
>gi|159465759|ref|XP_001691090.1| predicted protein [Chlamydomonas reinhardtii]
gi|158279776|gb|EDP05536.1| predicted protein [Chlamydomonas reinhardtii]
Length = 336
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 146/298 (48%), Positives = 199/298 (66%), Gaps = 23/298 (7%)
Query: 143 FPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLR--QEILMST 200
F +G+P++ +APMVD SELP+R+L R +G+ YTPM+ A F DKK R E+L +
Sbjct: 39 FRSMGAPKYHVAPMVDQSELPFRMLCRNHGATCAYTPMLHARIFTQDKKYRCAAEMLTTC 98
Query: 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPL 258
EDRPL +QFC N+ ++L +AA++ E CD IDIN GCPQ +AKRG YGA+L DD P
Sbjct: 99 TEDRPLFVQFCSNEPQHLLKAARMVEAMGICDAIDINFGCPQRIAKRGGYGAFLMDDLPK 158
Query: 259 LTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL 318
+ +V L Q +++PV+ KIRI+ D+ KTVEYARM+ERAG L+AVHGR +Q+ ++
Sbjct: 159 VEAMVRGLAQGLRIPVTAKIRIFPDLAKTVEYARMVERAGAWLVAVHGRLREQKDLSATR 218
Query: 319 ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRP 378
A W+ I AV+ AL++PV+ANGNI+ L DV+ACLA TG GV++AEG L +PALF + P
Sbjct: 219 ADWDAIRAVKAALSVPVLANGNIRHLGDVDACLAYTGCDGVLSAEGLLADPALFAPRREP 278
Query: 379 -------------AWELASEYLDLVAQYPVRLQYARGHVFNMCHHLL--TLPENSDVR 421
LA+EYL LVA +PV L+ RGHV H L+ L E++D+R
Sbjct: 279 VASGDVSEVGGRDGGTLAAEYLALVAAHPVPLRMVRGHV----HKLMWDWLAEHTDLR 332
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLR--QEILMST 130
+ +G+P++ +APMVD SELP+R+L R +G+ YTPM+ A F DKK R E+L +
Sbjct: 39 FRSMGAPKYHVAPMVDQSELPFRMLCRNHGATCAYTPMLHARIFTQDKKYRCAAEMLTTC 98
Query: 131 PEDRPLIIQ 139
EDRPL +Q
Sbjct: 99 TEDRPLFVQ 107
>gi|225438801|ref|XP_002283225.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Vitis vinifera]
Length = 424
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 139/316 (43%), Positives = 189/316 (59%), Gaps = 16/316 (5%)
Query: 143 FPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 202
+ +LG P+ I+APMVD SELP+R+L R+YG+ YTPM+ + F ++K R + + E
Sbjct: 86 WKKLGQPKLIVAPMVDNSELPFRMLCRKYGAQAAYTPMLHSRIFSENEKYRSQEFTTCKE 145
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
DRPL +QFC ND L EAA+ EP+CD +DIN+GCPQ +A+RG+YGA+L D+ PL+ +L
Sbjct: 146 DRPLFVQFCANDPDTLLEAAQRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 205
Query: 263 VSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
V L + VPVSCKIR++ ++ T+ YARMLE AGC LLAVHGRT D++ A W
Sbjct: 206 VEKLALNLHVPVSCKIRVFPNLQDTINYARMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 265
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWEL 382
I AV+ A++IPV+ANG+I+ + DV+ CL +TG GV++AE L NPALF G W L
Sbjct: 266 AIKAVKNAVSIPVLANGDIRHMDDVQRCLEETGADGVLSAESLLENPALFAGFQTAEWAL 325
Query: 383 AS----------------EYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGK 426
EYL L +YPV + R HV + + L
Sbjct: 326 GGEEGNKDGELDQANLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPQVRDDLNSQS 385
Query: 427 TNHIKDLRKAVDMLRE 442
+ L VD LRE
Sbjct: 386 KLTFEFLYNMVDQLRE 401
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 58/100 (58%), Gaps = 10/100 (10%)
Query: 44 QECHSPAARCKGTNVVPKDCHSSTARSDA----WTQLGSPRFILAPMVDASELPWRLLSR 99
QEC S +A P C + +R + W +LG P+ I+APMVD SELP+R+L R
Sbjct: 59 QECQSSSADW------PSRCLTGESRIERAWAHWKKLGQPKLIVAPMVDNSELPFRMLCR 112
Query: 100 RYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+YG+ YTPM+ + F ++K R + + EDRPL +Q
Sbjct: 113 KYGAQAAYTPMLHSRIFSENEKYRSQEFTTCKEDRPLFVQ 152
>gi|168057686|ref|XP_001780844.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667700|gb|EDQ54323.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 401
Score = 273 bits (699), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 140/282 (49%), Positives = 180/282 (63%), Gaps = 19/282 (6%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
+LG+P+ ++APMVD SELP+R+L R+YG+ Y+PM+ + F D K R + + PEDR
Sbjct: 40 KLGAPKLMVAPMVDQSELPFRMLCRKYGATAAYSPMLHSRLFAQDAKYRLKEFSTCPEDR 99
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PL IQFC N+ L EAAKL + CD +DIN GCPQ +AKRG+YGA+L DD PL+ +LV
Sbjct: 100 PLFIQFCANNPDTLLEAAKLVQDDCDYVDINFGCPQRIAKRGNYGAFLMDDLPLVRSLVE 159
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
L + PVSCKIR++ + T+ YARM+E AGC LLAVHGRT DQ+ + A W I
Sbjct: 160 KLSSGLTTPVSCKIRMFPKLEDTLAYARMIEEAGCSLLAVHGRTRDQKDGKSIRADWGVI 219
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG-QTRP----A 379
AV+ AL IPV+ANGNI+ L DV+ C+ TGV GVM+AE L NPALF G + +P A
Sbjct: 220 KAVKSALRIPVVANGNIRWLEDVDECIRATGVDGVMSAESLLENPALFAGYRMKPLDSSA 279
Query: 380 WE--------------LASEYLDLVAQYPVRLQYARGHVFNM 407
E L EYLD +YPV + R HV M
Sbjct: 280 AEPDDHDKKYSLNEPTLVLEYLDFCDKYPVPARMIRAHVHRM 321
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 48/69 (69%)
Query: 71 DAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
D W +LG+P+ ++APMVD SELP+R+L R+YG+ Y+PM+ + F D K R + +
Sbjct: 36 DHWNKLGAPKLMVAPMVDQSELPFRMLCRKYGATAAYSPMLHSRLFAQDAKYRLKEFSTC 95
Query: 131 PEDRPLIIQ 139
PEDRPL IQ
Sbjct: 96 PEDRPLFIQ 104
>gi|388851412|emb|CCF54997.1| related to tRNA dihydrouridine synthase [Ustilago hordei]
Length = 529
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 158/415 (38%), Positives = 225/415 (54%), Gaps = 78/415 (18%)
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD----KKLRQEIL 197
++ +GSP+ ++APMVD SELPWR+LSRRYGS L YTPM++A F + KK++ + +
Sbjct: 42 LYRSIGSPQRVVAPMVDQSELPWRILSRRYGSELVYTPMINAKLFADENSKKKKVKYQEV 101
Query: 198 MSTPE--------------------------------DRPLIIQFCGNDSKNLTEAAKLA 225
E DRPL +QFC ND L AA++
Sbjct: 102 NFNKEFAEEGATSLSLTPASSSSSEPSISAEGRFKDTDRPLFVQFCANDPSTLLRAAQVV 161
Query: 226 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN 285
E CD +D+N+GCPQ +A+RGHYG+YL +DWPL+ +L++ L ++VPV+ K+R+Y+ V
Sbjct: 162 EDRCDAVDLNLGCPQHIARRGHYGSYLMEDWPLIFSLINILHINLKVPVTAKMRVYESVE 221
Query: 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLA 345
+TV YARMLERAG Q++ VHGRT + +G +TGLA W I AV++A+ +PV ANGN+
Sbjct: 222 ETVAYARMLERAGAQIVTVHGRTRNMKGHHTGLADWNKIRAVKEAVKVPVFANGNVLYPQ 281
Query: 346 DVEACLAQTGVAGVMTAEGNLYNPALFTG----------QTRPAW------ELASEYLDL 389
D LA TG G+M+AEGNLYNPA+F PA +A EYLD+
Sbjct: 282 DFYDALAATGAKGIMSAEGNLYNPAVFMKFLASVPSRMFPNAPALPFPSIVAMAHEYLDI 341
Query: 390 VA--QYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTN---------HIKDLRKAVD 438
V + P + + H+F +C L + + D+R +GK I R+ +
Sbjct: 342 VTSLRTPTQSSAIKAHLFRLCRPALEV--HRDLREQLGKARFDDKAVGPAKIVTYRQFLT 399
Query: 439 MLRERFIDYHEGRKLW---PPPNYPMSSNH---------HNLSLPPWICQPYVRP 481
L ER ++ +W P P P S +H +P W+ QPY RP
Sbjct: 400 EL-ERRLEEDMKSGIWEKQPVPPLPGSVSHLTEPNGEAGRPAYIPHWLAQPYFRP 453
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 63 CHSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKL 122
H + D + +GSP+ ++APMVD SELPWR+LSRRYGS L YTPM++A F +
Sbjct: 33 IHPKLSSWDLYRSIGSPQRVVAPMVDQSELPWRILSRRYGSELVYTPMINAKLFADENSK 92
Query: 123 RQEI 126
++++
Sbjct: 93 KKKV 96
>gi|255079532|ref|XP_002503346.1| tRNA-dihydrouridine synthase [Micromonas sp. RCC299]
gi|226518612|gb|ACO64604.1| tRNA-dihydrouridine synthase [Micromonas sp. RCC299]
Length = 353
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 138/303 (45%), Positives = 191/303 (63%), Gaps = 17/303 (5%)
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP 201
F +GSP+F +APMVD SEL +R L RR+G+ YTPM+ A F+ D K R+EI +
Sbjct: 28 FFRSMGSPKFHVAPMVDQSELAFRELCRRHGATCAYTPMIHARLFVEDLKYRKEIFTTHI 87
Query: 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTN 261
DRPL++QFC ND L +AA + PHCDG+DIN GCPQ +AKRG YGA+L DDW + N
Sbjct: 88 NDRPLLVQFCANDPDMLLKAASIVAPHCDGVDINFGCPQRIAKRGRYGAFLMDDWETVHN 147
Query: 262 LVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
L++ L + + VPV+ KIR+Y D+ +++YA+M+E AG QL+AVHGRT +Q+ A+W
Sbjct: 148 LINKLDKHLSVPVTAKIRVYDDLETSLKYAKMVEAAGAQLIAVHGRTREQKRAADVRANW 207
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT-----GQT 376
I ++K L +PV+ANG+I+ LA+ E CL TG GV++AE L NP+LF+ +
Sbjct: 208 AFIREIKKQLKVPVLANGDIRTLAEAEKCLEATGADGVLSAEPLLENPSLFSDPPLYSPS 267
Query: 377 RPAW----------ELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGK 426
PA EL EYL++ Y L+ +GHV NM L E +D+R + K
Sbjct: 268 DPAHPLPVEGDVNCELLHEYLEITRTYQTPLRMVKGHVHNMVGSWLK--EFTDLRDWLNK 325
Query: 427 TNH 429
T H
Sbjct: 326 TPH 328
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 69/126 (54%), Gaps = 9/126 (7%)
Query: 59 VPKDCHSSTARS--DAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQF 116
P+D T + D + +GSP+F +APMVD SEL +R L RR+G+ YTPM+ A F
Sbjct: 13 APEDASPGTKLTSWDFFRSMGSPKFHVAPMVDQSELAFRELCRRHGATCAYTPMIHARLF 72
Query: 117 IADKKLRQEILMSTPEDRPLIIQRTIF--PRLGSPRFILAPMVDASEL----PWRLLSR- 169
+ D K R+EI + DRPL++Q L I+AP D ++ P R+ R
Sbjct: 73 VEDLKYRKEIFTTHINDRPLLVQFCANDPDMLLKAASIVAPHCDGVDINFGCPQRIAKRG 132
Query: 170 RYGSHL 175
RYG+ L
Sbjct: 133 RYGAFL 138
>gi|392584699|gb|EIW74043.1| Dus-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 480
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/408 (37%), Positives = 217/408 (53%), Gaps = 74/408 (18%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIA-DKKLRQEILMSTPE-- 202
L SP++++APMVD SEL WR+LSRRYG+ L YTPM++A F+A K ++ P
Sbjct: 27 LRSPKYVVAPMVDQSELAWRVLSRRYGAQLIYTPMINAKIFMAPSKASHRDAFFDIPSGE 86
Query: 203 ------DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
DRPL++QFCGND + L +AAK+ E HCD IDIN+GCPQ +AKRG YG++L +DW
Sbjct: 87 EGSPSLDRPLVVQFCGNDPETLLQAAKVVEDHCDAIDINLGCPQDIAKRGKYGSFLMEDW 146
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
L+ LV+ L +++PV+ K R++ V KTV YA+MLE AG Q+L H R +QRG T
Sbjct: 147 DLIYKLVNILHVNLKIPVTAKFRVFPTVEKTVAYAKMLESAGAQILTCHSRLREQRGQRT 206
Query: 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF---- 372
GLA WE I AV++A+++PV ANGNI +D+E CL QTG +M+AEG LYNPALF
Sbjct: 207 GLADWEKIRAVKEAVSVPVFANGNILFHSDIERCLVQTGADALMSAEGQLYNPALFVPSA 266
Query: 373 -----------------------------------------TGQTRPAWELASEYLDLV- 390
+G P +LA EYL +
Sbjct: 267 SSSASTSSPSAAAAASPPLSYIPSHDITSSSQQTDVHAIALSGSYPPHADLALEYLAIAR 326
Query: 391 -AQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFIDYHE 449
+ L +GH+F + LT +D+R +G+ + R + E Y E
Sbjct: 327 SLKTTTALSAVKGHLFKLMRPALT--RETDLRDRLGRVR--SESRNTREGWEEVIGKYEE 382
Query: 450 -----GRKLWPPPNYPMSSNHHNLSLPP---------WICQPYVRPTP 483
++ P + S+ +++ P W+ QPY RP P
Sbjct: 383 ICAEMKTRMEVPASEAPSTLTEQITIEPVTGLPLIPHWLAQPYFRPLP 430
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 47/73 (64%), Gaps = 9/73 (12%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIA-DKKLRQEILMSTPE-- 132
L SP++++APMVD SEL WR+LSRRYG+ L YTPM++A F+A K ++ P
Sbjct: 27 LRSPKYVVAPMVDQSELAWRVLSRRYGAQLIYTPMINAKIFMAPSKASHRDAFFDIPSGE 86
Query: 133 ------DRPLIIQ 139
DRPL++Q
Sbjct: 87 EGSPSLDRPLVVQ 99
>gi|242097028|ref|XP_002439004.1| hypothetical protein SORBIDRAFT_10g029830 [Sorghum bicolor]
gi|241917227|gb|EER90371.1| hypothetical protein SORBIDRAFT_10g029830 [Sorghum bicolor]
Length = 421
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 139/301 (46%), Positives = 186/301 (61%), Gaps = 17/301 (5%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
RLGSPR ++APMVD SELP+R+L RRYG+ YTPM+ + F ++K R + EDR
Sbjct: 83 RLGSPRLLVAPMVDNSELPFRMLCRRYGADAAYTPMLHSRIFSENEKYRSMEFTTCKEDR 142
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PL +QFC ND L +AAK+ EPHCD +DIN GCPQ +A+RG+YGA+L D+ PL+ +LV
Sbjct: 143 PLFVQFCANDPDILLQAAKMVEPHCDYVDINFGCPQRIARRGNYGAFLMDNLPLVKSLVQ 202
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
+L + VPVS KIR++ + T+ YA+MLE AG L+AVHGRT D++ A W+ I
Sbjct: 203 NLAANLHVPVSVKIRVFPRLEDTLAYAKMLEEAGASLVAVHGRTRDEKDGKKFRADWDAI 262
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW---- 380
AV+ AL +PV+ANGNI+ + DV+ CL TG GV++AE L NPALF G W
Sbjct: 263 KAVKDALRVPVLANGNIRHMEDVKNCLEHTGADGVLSAETLLENPALFAGFRTKEWKEDS 322
Query: 381 -----------ELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNH 429
+L EYL L QYPV + R HV M + + +VR + K N
Sbjct: 323 DENGDSGLDQADLVIEYLKLCEQYPVPWRMVRSHVHKMLGDWFRV--HPEVREELNKQNK 380
Query: 430 I 430
+
Sbjct: 381 L 381
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 46/67 (68%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
W +LGSPR ++APMVD SELP+R+L RRYG+ YTPM+ + F ++K R + E
Sbjct: 81 WRRLGSPRLLVAPMVDNSELPFRMLCRRYGADAAYTPMLHSRIFSENEKYRSMEFTTCKE 140
Query: 133 DRPLIIQ 139
DRPL +Q
Sbjct: 141 DRPLFVQ 147
>gi|255585121|ref|XP_002533266.1| tRNA-dihydrouridine synthase, putative [Ricinus communis]
gi|223526922|gb|EEF29128.1| tRNA-dihydrouridine synthase, putative [Ricinus communis]
Length = 426
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 131/279 (46%), Positives = 179/279 (64%), Gaps = 16/279 (5%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
++G P+ ++APMVD SELP+R+L R+YG+ YTPM+ + F ++K R + + EDR
Sbjct: 87 KIGKPKLLVAPMVDNSELPFRMLCRKYGADAAYTPMLHSRIFTENEKYRTQEFTTCNEDR 146
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PL +QFC ND L EAA+ EP+CD +DIN+GCPQ +A+RG+YGA+L D+ PL+ +LV
Sbjct: 147 PLFVQFCANDPDILLEAARKVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVE 206
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
L + VPVSCKIR++ ++ T+ YARMLE AGC LLAVHGRT D++ A W+ I
Sbjct: 207 KLALNLNVPVSCKIRLFPKLDDTISYARMLEEAGCSLLAVHGRTRDEKDGKKFRADWKAI 266
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW---- 380
AVR A+ IP++ANGN++ + DV CL +TG GV++AE L NPALF G W
Sbjct: 267 KAVRNAVKIPLLANGNVRHMDDVRNCLEETGADGVLSAESLLENPALFAGFRTAEWVVGD 326
Query: 381 ------------ELASEYLDLVAQYPVRLQYARGHVFNM 407
+L EYL L +YPV + R HV M
Sbjct: 327 EESTRDGKLDQADLLVEYLKLCEEYPVPWRMIRAHVHKM 365
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 46/67 (68%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
W ++G P+ ++APMVD SELP+R+L R+YG+ YTPM+ + F ++K R + + E
Sbjct: 85 WNKIGKPKLLVAPMVDNSELPFRMLCRKYGADAAYTPMLHSRIFTENEKYRTQEFTTCNE 144
Query: 133 DRPLIIQ 139
DRPL +Q
Sbjct: 145 DRPLFVQ 151
>gi|390602729|gb|EIN12121.1| FMN-linked oxidoreductase [Punctularia strigosozonata HHB-11173
SS5]
Length = 513
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 153/398 (38%), Positives = 211/398 (53%), Gaps = 63/398 (15%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSA-------------------HQF 186
L SP++++APMVD SEL WR+LSRRYG+ L YTPM++A HQ
Sbjct: 32 LKSPKYVVAPMVDQSELAWRVLSRRYGAELVYTPMINAKMWAQHIRKPFREQSFSILHQE 91
Query: 187 IADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRG 246
+ P DRPLI+QFCGN+ + AA+ P+CD +DIN+GCPQ +A+RG
Sbjct: 92 EGSSSTSHSLSPGRPLDRPLIVQFCGNNPDQILSAAQDLAPYCDAVDINLGCPQDIARRG 151
Query: 247 HYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHG 306
YGA+LQD+W L+ ++S+L + + +PV+ K R++ V KTV YA+MLERAG Q+L HG
Sbjct: 152 KYGAFLQDEWELVEKIISTLHKNIPIPVTAKFRVFPSVEKTVAYAKMLERAGAQILTCHG 211
Query: 307 RTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366
RT +QRG N GLA W+ I AV++A+++PV ANGNI +D+E CL TG VM+AEG L
Sbjct: 212 RTREQRGQNAGLADWDKIRAVKEAVSVPVFANGNILFHSDIERCLQATGADAVMSAEGQL 271
Query: 367 YNPALF--TGQTRPA-----------------------------------WELASEYLDL 389
YN ALF + RPA +LA EYLD+
Sbjct: 272 YNAALFARSDHQRPAAPSIPLLPHLDPSASTRSIHDHFTFDFDEGLHPAHADLALEYLDI 331
Query: 390 VA--QYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRK----AVDMLRER 443
V + P +GH+F + L+ + RL K + L + V+M R
Sbjct: 332 VRNLKTPTAPSAVKGHLFKLLRPALSKETDLRQRLATIKAGGAEALEEYWDVIVEMKRRM 391
Query: 444 FIDYHEGRKLWPPPNYPMSSNHHNLS-LPPWICQPYVR 480
E R + + + L LP W+ QPY R
Sbjct: 392 DTAAEEARAKGLSGSDVVQVGAYGLQMLPSWVAQPYFR 429
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 19/83 (22%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSA-------------------HQF 116
L SP++++APMVD SEL WR+LSRRYG+ L YTPM++A HQ
Sbjct: 32 LKSPKYVVAPMVDQSELAWRVLSRRYGAELVYTPMINAKMWAQHIRKPFREQSFSILHQE 91
Query: 117 IADKKLRQEILMSTPEDRPLIIQ 139
+ P DRPLI+Q
Sbjct: 92 EGSSSTSHSLSPGRPLDRPLIVQ 114
>gi|125556734|gb|EAZ02340.1| hypothetical protein OsI_24443 [Oryza sativa Indica Group]
Length = 396
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 137/278 (49%), Positives = 178/278 (64%), Gaps = 15/278 (5%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
RLGSP+ ++APMVD SELP+R+L RRYG+ YTPM+ + F ++K R + EDR
Sbjct: 58 RLGSPKMVVAPMVDNSELPFRMLCRRYGATGAYTPMLHSRIFSENEKHRAMEFTTCKEDR 117
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PL +QFC ND L +AAK+ EP+CD +DIN GCPQ +A+RG+YGA+L D+ PL+ +LV
Sbjct: 118 PLFVQFCANDPDILLQAAKIVEPYCDYVDINFGCPQRIARRGYYGAFLMDNLPLIKSLVQ 177
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
+L + VPVSCKIRI+ + T+ YA+MLE AG L+AVHGRT D++ A W+ I
Sbjct: 178 NLSANLHVPVSCKIRIFPRLEDTLAYAKMLEEAGASLVAVHGRTRDEKDGKKFRADWDAI 237
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW---- 380
AV+ AL IPV+ANGNI+ L DV+ CL TG GV++AE L NPALF G W
Sbjct: 238 KAVKDALRIPVLANGNIRHLDDVKDCLEHTGADGVLSAETLLENPALFAGFRTKEWKENG 297
Query: 381 -----------ELASEYLDLVAQYPVRLQYARGHVFNM 407
+L EYL L QYPV + R HV M
Sbjct: 298 DEDEASGLDQADLVIEYLKLCEQYPVPWRMVRSHVHKM 335
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 46/67 (68%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
W +LGSP+ ++APMVD SELP+R+L RRYG+ YTPM+ + F ++K R + E
Sbjct: 56 WRRLGSPKMVVAPMVDNSELPFRMLCRRYGATGAYTPMLHSRIFSENEKHRAMEFTTCKE 115
Query: 133 DRPLIIQ 139
DRPL +Q
Sbjct: 116 DRPLFVQ 122
>gi|66815915|ref|XP_641974.1| tRNA-dihydrouridine synthase 1-like protein [Dictyostelium
discoideum AX4]
gi|60470022|gb|EAL68003.1| tRNA-dihydrouridine synthase 1-like protein [Dictyostelium
discoideum AX4]
Length = 435
Score = 271 bits (694), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 125/298 (41%), Positives = 193/298 (64%), Gaps = 2/298 (0%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L SP+ +APMVD + L +R+L R+YG+ + YTPM + F K R++ + PEDRP
Sbjct: 49 LKSPKKTVAPMVDHTFLAFRMLCRKYGADMVYTPMFHSKNFATCKTYRRDYWSTCPEDRP 108
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
L++QFCGN+ + + +AAK E HCD ID+N+GCPQ +A+RG+YG++L D ++ +V
Sbjct: 109 LVVQFCGNEPEWVVKAAKYIEDHCDAIDLNLGCPQQIARRGNYGSFLLDKPHIILPIVQE 168
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + ++VP+ CKIR+ +++ T++ A L+ AGCQLL +HGRT +Q+G N+G+A+W+ I
Sbjct: 169 LHKHIKVPIFCKIRLLPNLDDTIKLALQLQEAGCQLLTIHGRTKEQKGHNSGIANWKAIR 228
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
+R+ L+IPVIANG++ D++ CL +TG GVM+AEG L NP+ F+G P +++A E
Sbjct: 229 TIREQLSIPVIANGSVVQYEDIDRCLEETGADGVMSAEGILANPSFFSGLKVPIYQVARE 288
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
Y+D Y + R H+F M L + SD+R +G T+ R + L R
Sbjct: 289 YIDFTEIYKTSIHVTRSHIFKMLKEKLDV--YSDLRETMGATHTNDGFRDIITDLETR 344
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
L SP+ +APMVD + L +R+L R+YG+ + YTPM + F K R++ + PEDRP
Sbjct: 49 LKSPKKTVAPMVDHTFLAFRMLCRKYGADMVYTPMFHSKNFATCKTYRRDYWSTCPEDRP 108
Query: 136 LIIQ 139
L++Q
Sbjct: 109 LVVQ 112
>gi|449016924|dbj|BAM80326.1| similar to tRNA dihydrouridine synthase Dus1p [Cyanidioschyzon
merolae strain 10D]
Length = 362
Score = 271 bits (692), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 141/286 (49%), Positives = 187/286 (65%), Gaps = 7/286 (2%)
Query: 143 FPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 202
F +GSPRF+ APMVDASEL +RLL RRYG L YTPM+ + F+ K R E +
Sbjct: 22 FRAVGSPRFLCAPMVDASELAFRLLVRRYGVQLAYTPMLHSLNFLQSPKYRDEHFTTCAL 81
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
DRP++ QFCGND L AAKL E D +D+N+GCPQ +A+RG YGA+LQDDW L+ L
Sbjct: 82 DRPVVAQFCGNDPTTLVAAAKLVESQVDAVDLNLGCPQNIARRGRYGAFLQDDWDLVQRL 141
Query: 263 VSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
VS+L VPV CKIR++ D +KT+ YA++++ AGC +LAVHGRT DQ+G + G A+W
Sbjct: 142 VSALSTHCSVPVWCKIRVFPDEHKTLAYAKLIQDAGCSVLAVHGRTRDQKGNDPGPANWT 201
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG-QTRPAWE 381
I +++ L IPV+ NGNIQ ADV+ LA+T GV+ A+ L PALF+G + +
Sbjct: 202 MIRRIKEHLEIPVLMNGNIQSWADVQRGLAETRCDGVLAADRLLAYPALFSGREDNCIYA 261
Query: 382 LASEYLDLVAQY----PVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
LA EYL +V QY P R+ RGH+F M + + E+ RLL
Sbjct: 262 LAREYLGIVEQYDPQTPARM--IRGHLFRMLNADIRRDEDLRERLL 305
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 45/69 (65%)
Query: 71 DAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
D + +GSPRF+ APMVDASEL +RLL RRYG L YTPM+ + F+ K R E +
Sbjct: 20 DHFRAVGSPRFLCAPMVDASELAFRLLVRRYGVQLAYTPMLHSLNFLQSPKYRDEHFTTC 79
Query: 131 PEDRPLIIQ 139
DRP++ Q
Sbjct: 80 ALDRPVVAQ 88
>gi|303278204|ref|XP_003058395.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459555|gb|EEH56850.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 440
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 148/336 (44%), Positives = 202/336 (60%), Gaps = 29/336 (8%)
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP 201
F +GSPRF +APMVD SEL +R L RRYG+ L YTPM+ A F+ D K R EI +
Sbjct: 40 FFESMGSPRFHVAPMVDQSELAFRTLCRRYGATLAYTPMIHARLFVEDLKYRAEIFTTVE 99
Query: 202 --EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 259
DRPL++QFC ND L AAKL PHCDG+DIN GCPQ +AK+G YGA+L DDW +
Sbjct: 100 GIADRPLLVQFCANDPATLLAAAKLVAPHCDGVDINFGCPQRIAKKGRYGAFLMDDWKTV 159
Query: 260 TNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA 319
+L+S L + + VPV+ KIR+Y D+ +++YA M++ AG QL+A+HGRT +Q+ + A
Sbjct: 160 HDLISILDKELSVPVTAKIRVYDDLETSIQYAEMVQNAGAQLVAIHGRTREQKRASDVRA 219
Query: 320 SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG-QTRP 378
+W I A+++ LT+PVIANG+++ LA+ CL TG GVM+A+ L NP+LF+ P
Sbjct: 220 NWAFIKAIKERLTVPVIANGDVRTLAEARKCLEATGADGVMSADPLLENPSLFSDPPFAP 279
Query: 379 AWELAS--------------EYLDLVAQYP---VRLQYARGHVFNMCHHLLTLPENSDVR 421
+LA+ EYLD + Q P L+ + HVF M H L E +D+R
Sbjct: 280 TRDLANPLPIEGDANCRLLMEYLD-ITQLPGHHTPLRMIKAHVFKMVGHWLA--EFTDLR 336
Query: 422 LLVGKTNH----IKDLRKAVDML--RERFIDYHEGR 451
+ + + I LR L R R I EGR
Sbjct: 337 DWLNREKYEKITIDALRAWTKELTGRVRLIAKKEGR 372
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 64/112 (57%), Gaps = 9/112 (8%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP- 131
+ +GSPRF +APMVD SEL +R L RRYG+ L YTPM+ A F+ D K R EI +
Sbjct: 41 FESMGSPRFHVAPMVDQSELAFRTLCRRYGATLAYTPMIHARLFVEDLKYRAEIFTTVEG 100
Query: 132 -EDRPLIIQRTIF--PRLGSPRFILAPMVDASEL----PWRLLSR-RYGSHL 175
DRPL++Q L + ++AP D ++ P R+ + RYG+ L
Sbjct: 101 IADRPLLVQFCANDPATLLAAAKLVAPHCDGVDINFGCPQRIAKKGRYGAFL 152
>gi|115469926|ref|NP_001058562.1| Os06g0712900 [Oryza sativa Japonica Group]
gi|113596602|dbj|BAF20476.1| Os06g0712900 [Oryza sativa Japonica Group]
Length = 421
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 136/278 (48%), Positives = 178/278 (64%), Gaps = 15/278 (5%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
RLGSP+ ++APMVD SELP+R+L RRYG+ YTPM+ + F ++K R + EDR
Sbjct: 83 RLGSPKMVVAPMVDNSELPFRMLCRRYGATGAYTPMLHSRIFSENEKHRAMEFTTCKEDR 142
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PL +QFC ND L +AAK+ EP+CD +DIN GCPQ +A+RG+YGA+L ++ PL+ +LV
Sbjct: 143 PLFVQFCANDPDILLQAAKIVEPYCDYVDINFGCPQRIARRGYYGAFLMNNLPLVKSLVQ 202
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
+L + VPVSCKIRI+ + T+ YA+MLE AG L+AVHGRT D++ A W+ I
Sbjct: 203 NLSANLHVPVSCKIRIFPRLEDTLAYAKMLEEAGASLVAVHGRTRDEKDGKKFRADWDAI 262
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW---- 380
AV+ AL IPV+ANGNI+ L DV+ CL TG GV++AE L NPALF G W
Sbjct: 263 KAVKDALRIPVLANGNIRHLDDVKDCLEHTGADGVLSAETLLENPALFAGFRTKEWKENG 322
Query: 381 -----------ELASEYLDLVAQYPVRLQYARGHVFNM 407
+L EYL L QYPV + R HV M
Sbjct: 323 DEDEASGLDQADLVIEYLKLCEQYPVPWRMVRSHVHKM 360
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 46/67 (68%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
W +LGSP+ ++APMVD SELP+R+L RRYG+ YTPM+ + F ++K R + E
Sbjct: 81 WRRLGSPKMVVAPMVDNSELPFRMLCRRYGATGAYTPMLHSRIFSENEKHRAMEFTTCKE 140
Query: 133 DRPLIIQ 139
DRPL +Q
Sbjct: 141 DRPLFVQ 147
>gi|296419375|ref|XP_002839286.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635409|emb|CAZ83477.1| unnamed protein product [Tuber melanosporum]
Length = 483
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 160/412 (38%), Positives = 225/412 (54%), Gaps = 61/412 (14%)
Query: 131 PEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYG--SHLCYTPMVSAHQFIA 188
P+ +P + R + LGSP+ +APMV+ SEL WRLLSRR+ + LCYTPM + F
Sbjct: 7 PKTKPKLTGRDFYNSLGSPKTAVAPMVEQSELAWRLLSRRHSPPNTLCYTPMFHSRLFAT 66
Query: 189 DKKLRQEI----LMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAK 244
R + L + DRPL +QFC N ++L AA+ PHCDG+D+N+GCPQ +A+
Sbjct: 67 TPIYRSQSFYPPLDGSKPDRPLFVQFCSNTPEDLFSAAQHVAPHCDGVDLNLGCPQGIAR 126
Query: 245 RGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
+G YGA+LQ+DW L+ +LVS L + ++VPV+ KIRI + +++EYARM+ AG Q+L V
Sbjct: 127 KGKYGAFLQEDWGLIRSLVSKLHKDLEVPVTAKIRILETRERSLEYARMVVDAGAQVLTV 186
Query: 305 HGRTVDQRGMNTGLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTA 362
HGRT DQ+G NTG+A W I +R L V+ ANGNI DV+ CL TG GVM+A
Sbjct: 187 HGRTRDQKGHNTGMADWGVIRYIRDNLPKEVVLFANGNILWHEDVQRCLDATGADGVMSA 246
Query: 363 EGNLYNPALFTGQTRPAWE--------LASEYLDLVAQYPVRLQYARG------------ 402
EGNLYNPA+F Q+ WE L EYLD+V + + RG
Sbjct: 247 EGNLYNPAIF--QSDEDWEKRFPRMDILGREYLDIVRKEVLPGLEERGRKLLLQDPSITA 304
Query: 403 ---HVFNMCHHLLTLPENSDVRLLVGKTNH---------------IKDLRKAVDMLRERF 444
H+F + H L LP+ +DVR L+ K++ + +++K + +
Sbjct: 305 IKPHLFKLWHAL--LPKYTDVRALLAKSSARASEGGDVLEPYETCLMEVQKIIKAELNQN 362
Query: 445 IDYHEGRKLWPPPNYPMSSNHHNL----------SLPPWI-CQPYVRPTPEQ 485
+ + W P+ P + L PW CQPY RP PE+
Sbjct: 363 PELTDENGRWVGPDTPFEEGAKGVMIEVDGVKFNRLVPWYRCQPYYRPLPEE 414
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 56 TNVVPKDCHSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYG--SHLCYTPMVSA 113
+ V PK T R D + LGSP+ +APMV+ SEL WRLLSRR+ + LCYTPM +
Sbjct: 3 SEVPPKTKPKLTGR-DFYNSLGSPKTAVAPMVEQSELAWRLLSRRHSPPNTLCYTPMFHS 61
Query: 114 HQFIADKKLRQEI----LMSTPEDRPLIIQ 139
F R + L + DRPL +Q
Sbjct: 62 RLFATTPIYRSQSFYPPLDGSKPDRPLFVQ 91
>gi|53792892|dbj|BAD54069.1| putative PP35 [Oryza sativa Japonica Group]
gi|53793348|dbj|BAD54568.1| putative PP35 [Oryza sativa Japonica Group]
gi|125598482|gb|EAZ38262.1| hypothetical protein OsJ_22639 [Oryza sativa Japonica Group]
Length = 396
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 136/278 (48%), Positives = 178/278 (64%), Gaps = 15/278 (5%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
RLGSP+ ++APMVD SELP+R+L RRYG+ YTPM+ + F ++K R + EDR
Sbjct: 58 RLGSPKMVVAPMVDNSELPFRMLCRRYGATGAYTPMLHSRIFSENEKHRAMEFTTCKEDR 117
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PL +QFC ND L +AAK+ EP+CD +DIN GCPQ +A+RG+YGA+L ++ PL+ +LV
Sbjct: 118 PLFVQFCANDPDILLQAAKIVEPYCDYVDINFGCPQRIARRGYYGAFLMNNLPLVKSLVQ 177
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
+L + VPVSCKIRI+ + T+ YA+MLE AG L+AVHGRT D++ A W+ I
Sbjct: 178 NLSANLHVPVSCKIRIFPRLEDTLAYAKMLEEAGASLVAVHGRTRDEKDGKKFRADWDAI 237
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW---- 380
AV+ AL IPV+ANGNI+ L DV+ CL TG GV++AE L NPALF G W
Sbjct: 238 KAVKDALRIPVLANGNIRHLDDVKDCLEHTGADGVLSAETLLENPALFAGFRTKEWKENG 297
Query: 381 -----------ELASEYLDLVAQYPVRLQYARGHVFNM 407
+L EYL L QYPV + R HV M
Sbjct: 298 DEDEASGLDQADLVIEYLKLCEQYPVPWRMVRSHVHKM 335
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 46/67 (68%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
W +LGSP+ ++APMVD SELP+R+L RRYG+ YTPM+ + F ++K R + E
Sbjct: 56 WRRLGSPKMVVAPMVDNSELPFRMLCRRYGATGAYTPMLHSRIFSENEKHRAMEFTTCKE 115
Query: 133 DRPLIIQ 139
DRPL +Q
Sbjct: 116 DRPLFVQ 122
>gi|330800078|ref|XP_003288066.1| hypothetical protein DICPUDRAFT_152274 [Dictyostelium purpureum]
gi|325081890|gb|EGC35390.1| hypothetical protein DICPUDRAFT_152274 [Dictyostelium purpureum]
Length = 402
Score = 270 bits (690), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 125/299 (41%), Positives = 191/299 (63%), Gaps = 2/299 (0%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L SP+ ++APMVD + L +R+L+R+YG+ L YTPM + F+ K R++ + PEDRP
Sbjct: 47 LKSPKLVVAPMVDHTYLAFRMLTRKYGADLVYTPMFHSKNFVTCKTYRKDNFTTCPEDRP 106
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
L++QFCGND + + +AAKL E CD ID+N+GCPQ +A+RG+YG++L D ++ +V
Sbjct: 107 LVVQFCGNDPEWVVKAAKLVEDRCDAIDLNLGCPQQIARRGNYGSFLLDKPHIILPIVRE 166
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + ++VP+ CKIR+ D+ T++ A L+ AGCQLL VHGRT +Q+G +G A+W+ I
Sbjct: 167 LHKNIKVPIFCKIRLLPDLKDTIKLALDLQEAGCQLLTVHGRTKEQKGQYSGHANWDAIR 226
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
+++ L IPVIANG++ D++ CL + G+M+AEG L NP+ F G+ +++A E
Sbjct: 227 QIKEVLHIPVIANGSVVKFDDIDRCLEASKADGIMSAEGLLANPSFFCGKDISIYQVAHE 286
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
Y+D QY R H+F M SD+R +G+T+ I R V+ L R+
Sbjct: 287 YMDFSIQYTTAGHIVRSHLFKMLKE--KFDNYSDLRDKMGETHTIDGFRDIVNELENRY 343
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 45/64 (70%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
L SP+ ++APMVD + L +R+L+R+YG+ L YTPM + F+ K R++ + PEDRP
Sbjct: 47 LKSPKLVVAPMVDHTYLAFRMLTRKYGADLVYTPMFHSKNFVTCKTYRKDNFTTCPEDRP 106
Query: 136 LIIQ 139
L++Q
Sbjct: 107 LVVQ 110
>gi|340500057|gb|EGR26961.1| t-diRNAhydrouridine synthase, putative [Ichthyophthirius
multifiliis]
Length = 346
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 129/303 (42%), Positives = 187/303 (61%), Gaps = 3/303 (0%)
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQ-FIADKKLRQEILMST 200
+ +G P++I APMVD SEL +R+L R+YG+ L YTPM+S+ + +K + +
Sbjct: 14 FYKSIGEPQYICAPMVDQSELAFRMLCRKYGTTLAYTPMISSKVVYDQGEKSLKNFFSTC 73
Query: 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
PEDRPLI QFCGND + L EA K + CD +DIN GCPQ +AK+GHYG++L + L+
Sbjct: 74 PEDRPLIAQFCGNDPEVLLEACKYIQKDCDAVDINFGCPQGIAKKGHYGSFLLQEPDLIE 133
Query: 261 NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320
++V L + + +PV+CKIRI + KT+E A+ +E AGC +L VHGRT +Q G+
Sbjct: 134 SMVKKLHEELDIPVTCKIRIIRSREKTLELAKRIENAGCSILTVHGRTKEQNKDLVGMCD 193
Query: 321 WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW 380
W+ I ++ LTIPV ANG I DV+ C+ TGV GVM+AE L NPALF+G+
Sbjct: 194 WDIIKEIKDTLTIPVFANGGIYTFQDVQRCMEYTGVDGVMSAEALLENPALFSGKIYDFD 253
Query: 381 ELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDML 440
+LA EYLD +Y + + H+F + H L +N D+R +G ++ ++ L
Sbjct: 254 DLAVEYLDFAEKYDAPFYFVKSHLFKILHK--GLAQNIDLRSQLGIIKTNEEFKEICKKL 311
Query: 441 RER 443
+ER
Sbjct: 312 KER 314
>gi|449329553|gb|AGE95824.1| hypothetical protein ECU07_1610 [Encephalitozoon cuniculi]
Length = 341
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 124/279 (44%), Positives = 180/279 (64%), Gaps = 4/279 (1%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK--LRQEIL 197
R + + P F +APMV SE WR LS+R+G+++ YT MV F+ + ++
Sbjct: 2 RKFWEEIQRPYFAVAPMVGNSEEAWRRLSKRHGANIFYTEMVHCDSFLRGSRNPVKNRWY 61
Query: 198 MSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
++ DRPL++Q CGN + + EAA + + HCD ID+N GCPQ VA++G YGAYLQ++W
Sbjct: 62 TTSEGDRPLVVQICGNSPEVMLEAALIIQDHCDAIDVNFGCPQKVARKGGYGAYLQENWK 121
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
L +V L + VPV CKIR++ + KTVEYA+M+E AGC LLAVHGRT DQRG G
Sbjct: 122 LTEEIVKVLSSGLNVPVFCKIRVFGSIEKTVEYAKMIEEAGCSLLAVHGRTRDQRGAAMG 181
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
ASW+HI A+++ L IPV++NGNI DV CL TG GVM E +L+NP +FTG+ R
Sbjct: 182 FASWKHIRAIKENLRIPVLSNGNIMTHHDVWRCLEYTGCDGVMVGEAHLHNPLIFTGEDR 241
Query: 378 PAWELASEYLDLVAQYP--VRLQYARGHVFNMCHHLLTL 414
E+ EYLD+ ++P +++ + H+F + ++ ++
Sbjct: 242 SCLEIIGEYLDICMEFPGSADVRHIKSHMFRLLYNYFSM 280
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK--LRQEILMST 130
W ++ P F +APMV SE WR LS+R+G+++ YT MV F+ + ++ ++
Sbjct: 5 WEEIQRPYFAVAPMVGNSEEAWRRLSKRHGANIFYTEMVHCDSFLRGSRNPVKNRWYTTS 64
Query: 131 PEDRPLIIQ 139
DRPL++Q
Sbjct: 65 EGDRPLVVQ 73
>gi|19074582|ref|NP_586088.1| similarity to HYPOTHETICAL PROTEIN YM10_yeast [Encephalitozoon
cuniculi GB-M1]
gi|19069224|emb|CAD25692.1| similarity to HYPOTHETICAL PROTEIN YM10_yeast [Encephalitozoon
cuniculi GB-M1]
Length = 341
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 124/279 (44%), Positives = 180/279 (64%), Gaps = 4/279 (1%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK--LRQEIL 197
R + + P F +APMV SE WR LS+R+G+++ YT MV F+ + ++
Sbjct: 2 RKFWEEIQRPYFAVAPMVGNSEEAWRRLSKRHGANIFYTEMVHCDSFLRGSRNPVKNRWY 61
Query: 198 MSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
++ DRPL++Q CGN + + EAA + + HCD ID+N GCPQ VA++G YGAYLQ++W
Sbjct: 62 TTSEGDRPLVVQICGNSPEVMLEAALIIQDHCDAIDVNFGCPQKVARKGGYGAYLQENWK 121
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
L +V L + VPV CKIR++ + KTVEYA+M+E AGC LLAVHGRT DQRG G
Sbjct: 122 LTGEIVKVLSSGLNVPVFCKIRVFGSIEKTVEYAKMIEEAGCSLLAVHGRTRDQRGAAMG 181
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
ASW+HI A+++ L IPV++NGNI DV CL TG GVM E +L+NP +FTG+ R
Sbjct: 182 FASWKHIRAIKENLRIPVLSNGNIMTHHDVWRCLEYTGCDGVMVGEAHLHNPLIFTGEDR 241
Query: 378 PAWELASEYLDLVAQYP--VRLQYARGHVFNMCHHLLTL 414
E+ EYLD+ ++P +++ + H+F + ++ ++
Sbjct: 242 SCLEIIGEYLDICMEFPGSADVRHIKSHMFRLLYNYFSM 280
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK--LRQEILMST 130
W ++ P F +APMV SE WR LS+R+G+++ YT MV F+ + ++ ++
Sbjct: 5 WEEIQRPYFAVAPMVGNSEEAWRRLSKRHGANIFYTEMVHCDSFLRGSRNPVKNRWYTTS 64
Query: 131 PEDRPLIIQ 139
DRPL++Q
Sbjct: 65 EGDRPLVVQ 73
>gi|326502988|dbj|BAJ95927.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 430
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 135/278 (48%), Positives = 180/278 (64%), Gaps = 15/278 (5%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
RLGSPR ++APMVD SELP+R+L RRYG+ YTPM+ + F ++K R + EDR
Sbjct: 90 RLGSPRLVVAPMVDNSELPFRMLCRRYGADAAYTPMLHSRIFSENEKHRDMEFTTCKEDR 149
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PL +QFC ND L +AAK+ E +CD +D+N GCPQ +AKRG+YGA+L D+ PL+ +LV
Sbjct: 150 PLFVQFCANDPDILLQAAKMVEANCDYVDLNFGCPQRIAKRGYYGAFLMDNLPLVKSLVQ 209
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
+L ++VPVSCKIRI+ + T+ YA+MLE AG L+AVHGRT D++ A W+ I
Sbjct: 210 NLAGNLRVPVSCKIRIFPRLEDTLAYAKMLEEAGAALVAVHGRTRDEKDGKKFRADWDAI 269
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW---- 380
AV+ AL IPV+ANGNI+ + DV++CL TG GV++AE L NPALF G W
Sbjct: 270 KAVKDALRIPVLANGNIRHMEDVKSCLQHTGADGVLSAEPLLENPALFAGFRTKEWKEDG 329
Query: 381 -----------ELASEYLDLVAQYPVRLQYARGHVFNM 407
+LA EYL L QYPV + R H+ +
Sbjct: 330 NEDGDGGLDPADLAIEYLKLCEQYPVPWRMIRSHLHKL 367
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 46/67 (68%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
W +LGSPR ++APMVD SELP+R+L RRYG+ YTPM+ + F ++K R + E
Sbjct: 88 WRRLGSPRLVVAPMVDNSELPFRMLCRRYGADAAYTPMLHSRIFSENEKHRDMEFTTCKE 147
Query: 133 DRPLIIQ 139
DRPL +Q
Sbjct: 148 DRPLFVQ 154
>gi|430812366|emb|CCJ30231.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 358
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/357 (41%), Positives = 213/357 (59%), Gaps = 24/357 (6%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 199
R + +GSP I+APMVD SEL WR+LSRRYG+ LCYTPM A F K R+E+ S
Sbjct: 6 REFWRSIGSPSRIVAPMVDQSELAWRILSRRYGADLCYTPMFHAKNFWLSPKYRKEVWSS 65
Query: 200 --TPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
+DRPLI+QFC ND ++ +A+K+ CD +D+N+GCPQ +AKRG+YGAYLQ++W
Sbjct: 66 LDNGKDRPLIVQFCANDPEDFLKASKIVVGKCDAVDLNLGCPQNIAKRGYYGAYLQENWD 125
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
L++ ++ + ++ +P++ KIRI+ D KT+ YA M+ +G +LAVHGRT +Q+ TG
Sbjct: 126 LISKIIKYVNNSLDIPITAKIRIFPDKEKTLAYAWMIVESGVSILAVHGRTREQKSTMTG 185
Query: 318 LASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT-G 374
L+ W I +R+ L I + +NGNI DV+ CL +T V GVM+AEGNLYNP +FT
Sbjct: 186 LSDWSQILYLRENLPSDIVIFSNGNILWPHDVDRCLKETKVDGVMSAEGNLYNPCIFTRS 245
Query: 375 QTRPAW-ELASEYLDLVAQYPVRLQYARGHVFNMCHHLLT-----LPENSDVRLLVGKTN 428
P E+A EYL+++ Y +L+ R + M HL L + +R +GKT
Sbjct: 246 NIHPIITEIAKEYLNIIVNY--KLENDRSCINAMKPHLFKILRPGLCKYEHLRNELGKTK 303
Query: 429 HIKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
+L K ++ E I + + N++ + W CQPY+RP P Q
Sbjct: 304 P-GELEKYFKIVEELDILVKKA----------ILENNNEEKIQWWHCQPYLRPLPIQ 349
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 71 DAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS- 129
+ W +GSP I+APMVD SEL WR+LSRRYG+ LCYTPM A F K R+E+ S
Sbjct: 7 EFWRSIGSPSRIVAPMVDQSELAWRILSRRYGADLCYTPMFHAKNFWLSPKYRKEVWSSL 66
Query: 130 -TPEDRPLIIQ 139
+DRPLI+Q
Sbjct: 67 DNGKDRPLIVQ 77
>gi|145349324|ref|XP_001419086.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579317|gb|ABO97379.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 307
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 132/297 (44%), Positives = 186/297 (62%), Gaps = 18/297 (6%)
Query: 141 TIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 200
F LG+PR+ +APMVD SEL +R L +RYG+ L YTPM+ A F+ K R+EI ++
Sbjct: 8 AFFEALGNPRYHVAPMVDQSELAFRELCKRYGATLGYTPMIHARLFVESPKYRREIFSTS 67
Query: 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
DRPL+ QFC ND + L AA + P+CDG+DIN GCPQ +AKRG+YGA+L DDW +
Sbjct: 68 TRDRPLLAQFCANDPEILLRAATMIAPYCDGVDINFGCPQRIAKRGNYGAFLMDDWKTVE 127
Query: 261 NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320
L+ L + + VPV+ KIR+Y D+ T++YA+M+E AG Q++AVHGRT +Q+ A+
Sbjct: 128 ALIRKLDEELPVPVTAKIRVYDDLETTLKYAKMVEAAGAQIVAVHGRTREQKRCADIRAN 187
Query: 321 WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG------ 374
W +I A++ AL +PV+ANG+I+ LA+ ACL TG GV++AE L NPALF+
Sbjct: 188 WAYIRAIKDALKVPVLANGDIRSLAEARACLEATGADGVLSAEPLLSNPALFSDPPFYAA 247
Query: 375 ----------QTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVR 421
A +L EY D+ Y Y RGHV+ + H ++ E +D+R
Sbjct: 248 PTDGYAPIPLDGVAAVDLMIEYFDICKSYTTSFSYIRGHVWKLVGHWMS--EFTDLR 302
>gi|384251898|gb|EIE25375.1| FMN-linked oxidoreductase [Coccomyxa subellipsoidea C-169]
Length = 394
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 139/306 (45%), Positives = 193/306 (63%), Gaps = 14/306 (4%)
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP 201
+F GSPR+ +APMVD SEL +R+L RR+G+ YTPM+ + F+ D R E +
Sbjct: 18 MFRSWGSPRYFVAPMVDQSELAFRMLCRRHGATAAYTPMLHSRLFLQDPNYRAEHFSTCE 77
Query: 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTN 261
DRPL++QFC ND + L AA++ EPH D ID+N+GCPQ +A+RG YGA+L DD PL+
Sbjct: 78 GDRPLMVQFCANDPETLLAAARIVEPHADAIDLNLGCPQRIARRGRYGAFLMDDLPLVER 137
Query: 262 LVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+V + + + VPV+ KIR++ D KTVEYARMLERAG L+AVHGR +Q+ N A W
Sbjct: 138 IVRTCAEGLSVPVTVKIRVFPDRQKTVEYARMLERAGASLIAVHGRLREQKKSNGPDADW 197
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT-------- 373
+ I AV +A+ +PV+ANGNI+ LADV AC+A TG GV++AE L +PALF+
Sbjct: 198 DAIKAVVEAVGVPVLANGNIRTLADVHACMAYTGAVGVLSAESLLEDPALFSPRRLQPGG 257
Query: 374 -GQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVG---KTNH 429
L EYLDLV +P ++ GH F M L+ E +D+R + K
Sbjct: 258 AFGGAQGAHLLLEYLDLVDAHPCPMRMVTGHAFRMLGAWLS--EFTDLRDRLNQQHKEFG 315
Query: 430 IKDLRK 435
++D+R+
Sbjct: 316 VEDIRE 321
Score = 69.7 bits (169), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 63/110 (57%), Gaps = 15/110 (13%)
Query: 77 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 136
GSPR+ +APMVD SEL +R+L RR+G+ YTPM+ + F+ D R E + DRPL
Sbjct: 23 GSPRYFVAPMVDQSELAFRMLCRRHGATAAYTPMLHSRLFLQDPNYRAEHFSTCEGDRPL 82
Query: 137 IIQ------RTIFPRLGSPRFILAPMVDASEL----PWRLLSR-RYGSHL 175
++Q T+ L + R I+ P DA +L P R+ R RYG+ L
Sbjct: 83 MVQFCANDPETL---LAAAR-IVEPHADAIDLNLGCPQRIARRGRYGAFL 128
>gi|321249423|ref|XP_003191451.1| tRNA dihydrouridine synthase [Cryptococcus gattii WM276]
gi|317457918|gb|ADV19664.1| tRNA dihydrouridine synthase, putative [Cryptococcus gattii WM276]
Length = 623
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 154/399 (38%), Positives = 209/399 (52%), Gaps = 55/399 (13%)
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRR-------------------------YGSHLC 176
+ +GSP+F++APMVD SEL WRLLSR G+H+C
Sbjct: 49 FYRSIGSPKFVVAPMVDQSELAWRLLSRSPLPPALAGPSETVKTPQGKTYIRHPGGAHVC 108
Query: 177 YTPMVSAHQFIADK------------------KLRQEILMSTPEDRPLIIQFCGNDSKNL 218
YTPM+ A F+ K I DRPLI+QFC ND L
Sbjct: 109 YTPMIHAKVFVDAKGEGGRNGDGQFCLSLDEEGGEGTIGGVEGGDRPLIVQFCANDPDIL 168
Query: 219 TEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI 278
AAK E CD +DIN GCPQ +AKRGHYG++LQD+W L+ L+S+L + + VPV+ K
Sbjct: 169 LAAAKKVEHRCDAVDINFGCPQGIAKRGHYGSFLQDEWELIHKLISTLHENLSVPVTAKF 228
Query: 279 RIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN 338
RI+ D++KT+ YARM+E AG Q+L HGRT + +G NTGLA WE+I V+ A+ +PV AN
Sbjct: 229 RIFADLDKTIAYARMMEAAGAQILTCHGRTREMKGQNTGLADWEYIREVKNAVKVPVFAN 288
Query: 339 GNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWE-----LASEYLDLVA-- 391
GNI DV+ C+ TG GVMTAEGNL NPA+F P LA YLD+V
Sbjct: 289 GNILYREDVDRCMEVTGCDGVMTAEGNLSNPAIFMPPDHPYAHPPITLLAHRYLDIVEAL 348
Query: 392 QYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGK-TNHIKDLRKAVDMLRERFIDYHE- 449
+ P + H+F + +L E V++ + + + R+ + + R + E
Sbjct: 349 ETPTAGSAIKAHLFRLLKPVLDTDEELRVQIATCRWSEGMHGFREIIRDIERRCVPVREA 408
Query: 450 -GRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQQE 487
G W PP + + SLP + QP +R P E
Sbjct: 409 VGGADWKPPAIDPKTGYR--SLPMFAAQPQIRAKPVSTE 445
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 25/82 (30%)
Query: 64 HSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRR----------------------- 100
H D + +GSP+F++APMVD SEL WRLLSR
Sbjct: 41 HEKLGGYDFYRSIGSPKFVVAPMVDQSELAWRLLSRSPLPPALAGPSETVKTPQGKTYIR 100
Query: 101 --YGSHLCYTPMVSAHQFIADK 120
G+H+CYTPM+ A F+ K
Sbjct: 101 HPGGAHVCYTPMIHAKVFVDAK 122
>gi|168050219|ref|XP_001777557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671042|gb|EDQ57600.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 324
Score = 268 bits (685), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 140/295 (47%), Positives = 183/295 (62%), Gaps = 20/295 (6%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
+LG+P+ I+APM+D SELP+R+L R+YG+ YTPM + F R+ + PEDR
Sbjct: 10 KLGAPKLIVAPMMDQSELPFRMLCRKYGATAAYTPMFHSRPFALQPGYRRVEFTTCPEDR 69
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PL +QF ND + L +AA + CD +DIN+GCPQ VAKRG YGA+L DD PL+ +V+
Sbjct: 70 PLFVQFGANDPELLVKAAMFVQEDCDYVDINLGCPQRVAKRGFYGAFLMDDLPLIQLMVT 129
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
L ++ PVSCKIRI+ D+ T+ YARMLE AGC LLAVHGRT DQ+ T A WE I
Sbjct: 130 QLVSSLTTPVSCKIRIFPDLEDTLAYARMLENAGCSLLAVHGRTRDQKDGRTTRADWEAI 189
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG-QTRPAW--- 380
AV++A+ IPV+ANGNI+ L DV C+ TGV GV++AE L NPALF+G + RP
Sbjct: 190 KAVKEAVRIPVLANGNIRWLEDVHECIRMTGVDGVLSAESLLENPALFSGHRMRPVDAVT 249
Query: 381 ---------------ELASEYLDLVAQYPVRLQYARGHVFNM-CHHLLTLPENSD 419
L EYL+L +YP+ + R HV+ M C PE D
Sbjct: 250 GGLVELSKEGSLNEPSLVLEYLELCEKYPIPQRMIRSHVYKMLCAWFKRYPELRD 304
>gi|226498556|ref|NP_001142214.1| uncharacterized protein LOC100274382 [Zea mays]
gi|194707636|gb|ACF87902.1| unknown [Zea mays]
gi|413934916|gb|AFW69467.1| hypothetical protein ZEAMMB73_005938 [Zea mays]
Length = 420
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 133/278 (47%), Positives = 176/278 (63%), Gaps = 15/278 (5%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
RLGSPR ++APMVD SELP+R+L RRYG+ YTPM+ + F ++K R + EDR
Sbjct: 85 RLGSPRLLVAPMVDNSELPFRMLCRRYGADAAYTPMLHSRIFSENEKYRSMEFTTCKEDR 144
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PL +QFC ND L +AAK EP+CD +DIN GCPQ +A+RG+YGA+L D+ PL+ +LV
Sbjct: 145 PLFVQFCANDPDILLQAAKKVEPYCDYVDINFGCPQRIARRGNYGAFLMDNLPLVKSLVQ 204
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
+L + VPVS KIR++ + T+ YA+MLE AG L+AVHGRT D++ A W+ I
Sbjct: 205 NLAANLHVPVSVKIRVFPRLEDTLAYAKMLEEAGASLVAVHGRTRDEKDGKKFRADWDAI 264
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW---- 380
AV+ AL +PV+ANGNI+ + DV+ CL TG GV++AE L NPA+F G W
Sbjct: 265 KAVKDALRVPVLANGNIRHMEDVKNCLEHTGADGVLSAETLLENPAVFAGFRTKEWKEDG 324
Query: 381 -----------ELASEYLDLVAQYPVRLQYARGHVFNM 407
+L EYL L QYPV + R HV M
Sbjct: 325 DENGDGGLDQADLVIEYLKLCEQYPVPWRMVRSHVHKM 362
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 46/67 (68%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
W +LGSPR ++APMVD SELP+R+L RRYG+ YTPM+ + F ++K R + E
Sbjct: 83 WRRLGSPRLLVAPMVDNSELPFRMLCRRYGADAAYTPMLHSRIFSENEKYRSMEFTTCKE 142
Query: 133 DRPLIIQ 139
DRPL +Q
Sbjct: 143 DRPLFVQ 149
>gi|58258725|ref|XP_566775.1| tRNA dihydrouridine synthase [Cryptococcus neoformans var.
neoformans JEC21]
gi|134106771|ref|XP_777927.1| hypothetical protein CNBA3960 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260627|gb|EAL23280.1| hypothetical protein CNBA3960 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57222912|gb|AAW40956.1| tRNA dihydrouridine synthase, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 610
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 154/398 (38%), Positives = 208/398 (52%), Gaps = 54/398 (13%)
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRR-------------------------YGSHLC 176
+ +GSP+F++APMVD SEL WRLLSR G+H+C
Sbjct: 45 FYRSIGSPKFVVAPMVDQSELAWRLLSRSPLPPALAGPSETVTTPQGKAYIRHPGGAHVC 104
Query: 177 YTPMVSAHQFIADK------------------KLRQEILMSTPEDRPLIIQFCGNDSKNL 218
YTPM+ A F+ K I DRPLI+QFC ND L
Sbjct: 105 YTPMIHAKVFVDAKGEGGRNGDGQFCLSLDEEGGEGTIGGVEGGDRPLIVQFCANDPDIL 164
Query: 219 TEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI 278
AAK E CD +DIN GCPQ +AKRGHYG++LQD+W L+ L+S+L + + VPV+ K
Sbjct: 165 LAAAKKVEHRCDAVDINFGCPQGIAKRGHYGSFLQDEWELIHKLISTLHENLSVPVTAKF 224
Query: 279 RIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN 338
RI+ D++KT+ YARM+E AG Q+L HGRT + +G NTGLA WE+I V+KA+ +PV AN
Sbjct: 225 RIFPDLDKTIAYARMMEAAGAQILTCHGRTREMKGQNTGLADWEYIREVKKAVKVPVFAN 284
Query: 339 GNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWE-----LASEYLDLVA-- 391
GNI DV+ C+ TG GVMTAEGNL NPA+F P LA YLD+V
Sbjct: 285 GNILYREDVDRCMEVTGCDGVMTAEGNLSNPAIFMPPEHPHAHPPITVLAHRYLDIVEAL 344
Query: 392 QYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGK-TNHIKDLRKAVDMLRERFIDYHEG 450
P + H+F + +L E V++ + ++ + R+ + + R E
Sbjct: 345 DTPTAGSAIKAHLFRLLKPVLDTDEELRVQIATCRWSDGMDGFREIIRDIERRCAPVREA 404
Query: 451 RKL-WPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQQE 487
W PP + + SLP + QP +R P E
Sbjct: 405 LGADWRPPTVDPKTGYR--SLPMFAAQPQIRAKPVSTE 440
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 25/85 (29%)
Query: 61 KDCHSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRR-------------------- 100
K H D + +GSP+F++APMVD SEL WRLLSR
Sbjct: 34 KPTHEKLGGYDFYRSIGSPKFVVAPMVDQSELAWRLLSRSPLPPALAGPSETVTTPQGKA 93
Query: 101 -----YGSHLCYTPMVSAHQFIADK 120
G+H+CYTPM+ A F+ K
Sbjct: 94 YIRHPGGAHVCYTPMIHAKVFVDAK 118
>gi|302833555|ref|XP_002948341.1| hypothetical protein VOLCADRAFT_80128 [Volvox carteri f.
nagariensis]
gi|300266561|gb|EFJ50748.1| hypothetical protein VOLCADRAFT_80128 [Volvox carteri f.
nagariensis]
Length = 422
Score = 266 bits (680), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 144/301 (47%), Positives = 199/301 (66%), Gaps = 24/301 (7%)
Query: 143 FPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 202
F +GSP+F +APMVD SELP+RLL RR+G+ YTPM+ A F D+K R+E+L + E
Sbjct: 41 FRSIGSPKFHVAPMVDQSELPFRLLCRRHGATCAYTPMLHARIFSQDRKYREEMLTTCSE 100
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
DRPL++QFC ++ ++L AA+L + D IDIN GCPQ +AKRG YGA+L DD P +
Sbjct: 101 DRPLLVQFCAHEPQHLLAAARLVQDSGVADAIDINFGCPQRIAKRGGYGAFLMDDLPRVE 160
Query: 261 NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320
+LV L Q +++PV+ KIRI+ D+ KTV YARM+E AG L+AVHGR +Q+ ++ A
Sbjct: 161 SLVRVLAQNLRIPVTAKIRIFPDLAKTVAYARMVEAAGASLVAVHGRLREQKDNSSTRAD 220
Query: 321 WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF-------- 372
W+ I AV+ AL++PV+ANGNI+ L DV ACL+ TG GV++AE L +PALF
Sbjct: 221 WDAIRAVKAALSVPVLANGNIRHLGDVGACLSYTGADGVLSAESLLADPALFDVPARASV 280
Query: 373 -----TGQTR----PAWE---LASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDV 420
+G+ R P E LA++Y+DLV +PV L+ RGHV M L E++D+
Sbjct: 281 AVGDVSGRGRWYSAPPLERLSLAAQYMDLVRAHPVPLRMVRGHVHKMVGDWLA--EHTDL 338
Query: 421 R 421
R
Sbjct: 339 R 339
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 50/67 (74%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
+ +GSP+F +APMVD SELP+RLL RR+G+ YTPM+ A F D+K R+E+L + E
Sbjct: 41 FRSIGSPKFHVAPMVDQSELPFRLLCRRHGATCAYTPMLHARIFSQDRKYREEMLTTCSE 100
Query: 133 DRPLIIQ 139
DRPL++Q
Sbjct: 101 DRPLLVQ 107
>gi|50289099|ref|XP_446979.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526288|emb|CAG59912.1| unnamed protein product [Candida glabrata]
Length = 412
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 144/370 (38%), Positives = 212/370 (57%), Gaps = 32/370 (8%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 199
R +F ++G+PR I+APMVD SEL WR+LSRRYG+ LCYTPM A F +K R+E+
Sbjct: 13 RELFEKIGNPRHIVAPMVDQSELAWRVLSRRYGATLCYTPMFHAKLFATSEKYRREMWCD 72
Query: 200 ----TPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
+ DRPL++QFC ND + L +AAKL E CD +D+N+GCPQ +AK+GHYG++L ++
Sbjct: 73 LDGDSKLDRPLVVQFCANDPEYLLQAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEE 132
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
W L+ L+ +L + + +PV+ KIR++ D KT++YA+M+ AG Q L VHGR +Q+G
Sbjct: 133 WDLIHKLIKTLHENLNIPVTAKIRVFPDRQKTLDYAKMVLDAGAQFLTVHGRLREQKGQQ 192
Query: 316 TGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
TGLA W+ I +R+ L ANGNI D++ C++Q VM+AEGNLYNP +F
Sbjct: 193 TGLADWDIIKYLRENLPDNTVFFANGNILYPEDIDRCISQIKCDAVMSAEGNLYNPGVFN 252
Query: 374 -------GQTRPAWE-LASEYLDLV----AQYPVRLQYARGHVFNMCHHLLTLPENSDVR 421
+T P + L EY +++ + + + H F + LP +D+R
Sbjct: 253 VHYIGDKDKTYPRVDVLLREYFEIIRNECKESLASRKAMKSHFFKLLRPF--LPHYTDIR 310
Query: 422 LLVGKTNHIKDLRKAVDMLRERFIDYHEG-RKLWPPPNYPMSSNHHNLSL--------PP 472
+ N DL++ D + I E ++L+ P+ H+ L P
Sbjct: 311 SNIAALNAKSDLKEWEDKV---VIPVEEAVQELFKNPDIEDMIITHDKELWGGSYKTIPY 367
Query: 473 WICQPYVRPT 482
W CQPY RP
Sbjct: 368 WRCQPYFRPV 377
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 49/71 (69%), Gaps = 4/71 (5%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM---- 128
+ ++G+PR I+APMVD SEL WR+LSRRYG+ LCYTPM A F +K R+E+
Sbjct: 16 FEKIGNPRHIVAPMVDQSELAWRVLSRRYGATLCYTPMFHAKLFATSEKYRREMWCDLDG 75
Query: 129 STPEDRPLIIQ 139
+ DRPL++Q
Sbjct: 76 DSKLDRPLVVQ 86
>gi|392580094|gb|EIW73221.1| hypothetical protein TREMEDRAFT_13725, partial [Tremella
mesenterica DSM 1558]
Length = 549
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 153/414 (36%), Positives = 225/414 (54%), Gaps = 64/414 (15%)
Query: 134 RPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRR----------------------- 170
+P + + +GSP++++APMVD SE+ WRLLSR
Sbjct: 8 KPKLGGYDFYHSIGSPKWVVAPMVDQSEMAWRLLSRSPLPPSIAGPSTSVTPASTSKTYH 67
Query: 171 ---YGSHLCYTPMVSAHQFIA----------------DKKLRQEILMSTP-EDRPLIIQF 210
G+HLCYTPM+ A F +++ E L DRPLI+QF
Sbjct: 68 RHPGGAHLCYTPMIHAKVFAQCRPESRGGDGQFNLSFEEEGSSETLAGIEGGDRPLIVQF 127
Query: 211 CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
CGND + L +AA+ E CD +DIN+GCPQ +AKRG+YGA+LQDDW L+ ++S+L + +
Sbjct: 128 CGNDPEVLVKAARKVEHRCDAVDINLGCPQGIAKRGNYGAFLQDDWDLIHRIISTLHKNL 187
Query: 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA 330
+PV+ K RI+ ++++TV YA+MLE AG Q++ HGRT + +G TGLA W+ I AV++A
Sbjct: 188 SIPVTAKFRIFPEMDRTVAYAKMLEDAGAQIITCHGRTREMKGQLTGLADWQAIRAVKQA 247
Query: 331 LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWE-----LASE 385
+ IPV ANGNI DV+ C+ TG GVMTAEGNL NPA+F P + LA
Sbjct: 248 VKIPVFANGNILYRDDVDRCMEVTGCDGVMTAEGNLSNPAIFLPPDHPHFHPNTVLLARR 307
Query: 386 YLDLVA--QYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTN-------HIKDLRKA 436
YLD+V+ Q P + H+F + +L ++ +R + ++ + R+
Sbjct: 308 YLDIVSSLQTPTANSAIKSHLFRLFKPILDQDDDGSLRQYIARSGSGSTTEARVTSFREV 367
Query: 437 VDMLRER---FIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQQE 487
V+ + +R +D G PPP PM+ +LP + QP +R +P E
Sbjct: 368 VNEIEKRQQPAVD-KAGPDWSPPPIDPMTGYR---TLPVFSAQPLIRASPISTE 417
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 26/72 (36%)
Query: 71 DAWTQLGSPRFILAPMVDASELPWRLLSRR--------------------------YGSH 104
D + +GSP++++APMVD SE+ WRLLSR G+H
Sbjct: 15 DFYHSIGSPKWVVAPMVDQSEMAWRLLSRSPLPPSIAGPSTSVTPASTSKTYHRHPGGAH 74
Query: 105 LCYTPMVSAHQF 116
LCYTPM+ A F
Sbjct: 75 LCYTPMIHAKVF 86
>gi|349580208|dbj|GAA25368.1| K7_Dus1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 423
Score = 265 bits (677), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 146/372 (39%), Positives = 211/372 (56%), Gaps = 38/372 (10%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE---I 196
R +F ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++
Sbjct: 20 RQLFDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSS 79
Query: 197 LMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
L + DRPL++QFC ND + L AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W
Sbjct: 80 LDGSSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEW 139
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
L+ NL+++L + ++VPV+ KIRI+ D K++ YA+M+ AG Q L VHGR +Q+G T
Sbjct: 140 DLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQKT 199
Query: 317 GLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT- 373
GLA+WE I +R L + ANGNI D+ C+ G VM+AEGNLYNP +F
Sbjct: 200 GLANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFNV 259
Query: 374 GQTRPAW-------ELASEYLDLVAQYPVRLQYARGHVFNMCHHLLT-----LPENSDVR 421
GQT+ ++ EY +V + Q ++ M H LP ++D+R
Sbjct: 260 GQTKNKEKIFPRVDKIIREYFQIVKE----CQESKASKTAMKSHFFKILRPFLPHHTDIR 315
Query: 422 LLVGKTNH-----------IKDLRKAVDMLRER-FIDYHEGRKLWPPPNYPMSSNHHNLS 469
+ N +K + K V + E+ ID + + ++ S +
Sbjct: 316 STLATMNAKATWEEWEEQVVKPVEKVVQEIFEQPDIDIKDEITIGEKQSWGGSYR----T 371
Query: 470 LPPWICQPYVRP 481
+P W CQPY RP
Sbjct: 372 VPYWRCQPYFRP 383
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE---ILMS 129
+ ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++ L
Sbjct: 23 FDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLDG 82
Query: 130 TPEDRPLIIQ 139
+ DRPL++Q
Sbjct: 83 SSVDRPLVVQ 92
>gi|256269754|gb|EEU05021.1| Dus1p [Saccharomyces cerevisiae JAY291]
Length = 423
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 145/369 (39%), Positives = 212/369 (57%), Gaps = 32/369 (8%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE---I 196
R +F ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++
Sbjct: 20 RQLFDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSS 79
Query: 197 LMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
L + DRPL++QFC ND + L AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W
Sbjct: 80 LDGSSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEW 139
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
L+ NL+++L + ++VPV+ KIRI+ D K++ YA+M+ AG Q L VHGR +Q+G T
Sbjct: 140 DLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQKT 199
Query: 317 GLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT- 373
GLA+WE I +R L + ANGNI D+ C+ G VM+AEGNLYNP +F
Sbjct: 200 GLANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFNV 259
Query: 374 GQTRPAWELASEYLDLVAQYPVRL----QYARGHVFNMCHHLLT-----LPENSDVRLLV 424
GQT+ ++ ++ +Y R+ Q ++ M H LP ++D+R +
Sbjct: 260 GQTKNKEKIFPRVDKIIREY-FRIVKECQESKASKTAMKSHFFKILRPFLPHHTDIRSTL 318
Query: 425 GKTNH-----------IKDLRKAVDMLRER-FIDYHEGRKLWPPPNYPMSSNHHNLSLPP 472
N +K + K V + E+ ID + + ++ S ++P
Sbjct: 319 ATMNAKATWEEWEEQVVKPVEKVVQEIFEQPDIDIKDEITIGEKQSWGGSYR----TVPY 374
Query: 473 WICQPYVRP 481
W CQPY RP
Sbjct: 375 WRCQPYFRP 383
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE---ILMS 129
+ ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++ L
Sbjct: 23 FDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLDG 82
Query: 130 TPEDRPLIIQ 139
+ DRPL++Q
Sbjct: 83 SSVDRPLVVQ 92
>gi|392297501|gb|EIW08601.1| Dus1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 423
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 146/372 (39%), Positives = 211/372 (56%), Gaps = 38/372 (10%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE---I 196
R +F ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++
Sbjct: 20 RQLFDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSS 79
Query: 197 LMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
L + DRPL++QFC ND + L AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W
Sbjct: 80 LDGSSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEW 139
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
L+ NL+++L + ++VPV+ KIRI+ D K++ YA+M+ AG Q L VHGR +Q+G T
Sbjct: 140 DLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRIREQKGQKT 199
Query: 317 GLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT- 373
GLA+WE I +R L + ANGNI D+ C+ G VM+AEGNLYNP +F
Sbjct: 200 GLANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFNV 259
Query: 374 GQTRPAW-------ELASEYLDLVAQYPVRLQYARGHVFNMCHHLLT-----LPENSDVR 421
GQT+ ++ EY +V + Q ++ M H LP ++D+R
Sbjct: 260 GQTKNKEKIFPRVDKIIREYFQIVKE----CQESKASKTAMKSHFFKILRPFLPHHTDIR 315
Query: 422 LLVGKTNH-----------IKDLRKAVDMLRER-FIDYHEGRKLWPPPNYPMSSNHHNLS 469
+ N +K + K V + E+ ID + + ++ S +
Sbjct: 316 STLATMNAKATWEEWEEQVVKPVEKVVQEIFEQPDIDIKDEITIGEKQSWGGSYR----T 371
Query: 470 LPPWICQPYVRP 481
+P W CQPY RP
Sbjct: 372 VPYWRCQPYFRP 383
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE---ILMS 129
+ ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++ L
Sbjct: 23 FDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLDG 82
Query: 130 TPEDRPLIIQ 139
+ DRPL++Q
Sbjct: 83 SSVDRPLVVQ 92
>gi|164661924|ref|XP_001732084.1| hypothetical protein MGL_0677 [Malassezia globosa CBS 7966]
gi|159105986|gb|EDP44870.1| hypothetical protein MGL_0677 [Malassezia globosa CBS 7966]
Length = 473
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 156/404 (38%), Positives = 216/404 (53%), Gaps = 67/404 (16%)
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI----ADKKLRQEIL 197
++ LGSP+ I+APMVD SEL WR+L RRYG+ L YTPM++A ++ ++R+
Sbjct: 27 LYKSLGSPKCIVAPMVDQSELAWRILCRRYGADLVYTPMINAKIYVQQGRGTHRVREGFF 86
Query: 198 MS----------------TPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQM 241
DRPLI+QFC ND L EAA+ + CD +D+N+GCPQ
Sbjct: 87 NQDVGEEGAHTLDLCDDRKDSDRPLIVQFCANDPDMLLEAAQAVQDKCDAVDLNLGCPQQ 146
Query: 242 VAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQL 301
+AKRG +GA+L DDW L+ L+++L ++VPV+ K R+Y V K++ YARM++RAG Q+
Sbjct: 147 IAKRGKFGAFLMDDWDLVFRLINTLHLNLKVPVTAKFRVYDSVEKSIAYARMIQRAGAQI 206
Query: 302 LAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361
+ VHGRT + +G TGLA W + AV++AL IPV ANGNI D CLA TG GVM+
Sbjct: 207 VTVHGRTREMKGHKTGLADWSIMRAVKEALAIPVFANGNILYAQDWRDCLAYTGCDGVMS 266
Query: 362 AEGNLYNPALFTGQ--------TRPAWE-----------LASEYLDLVA--QYPVRLQYA 400
AEGNLYNP LF + PA + +A EYLD+VA + P
Sbjct: 267 AEGNLYNPTLFHRELGRDLSVLCDPAADHAQFEPMQLIRIAHEYLDIVARLKTPTSHSAL 326
Query: 401 RGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFIDYHEGRKLWPP---- 456
+GH+F + L + ++D+R ++G H D +RE HE K
Sbjct: 327 KGHMFKITRPALCI--HTDLRPVLGNA-HTYDDGDGEHQIREYRAFVHELEKRLEADASQ 383
Query: 457 PNY---PMSSNHHNLS----------------LPPWICQPYVRP 481
P Y P HH ++ +P W QPY RP
Sbjct: 384 PTYYTRPSELPHHYVAPPHIQDASDRATRPDYIPHWYLQPYFRP 427
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%)
Query: 64 HSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI 117
H D + LGSP+ I+APMVD SEL WR+L RRYG+ L YTPM++A ++
Sbjct: 19 HHKLEGYDLYKSLGSPKCIVAPMVDQSELAWRILCRRYGADLVYTPMINAKIYV 72
>gi|300706707|ref|XP_002995598.1| hypothetical protein NCER_101453 [Nosema ceranae BRL01]
gi|239604766|gb|EEQ81927.1| hypothetical protein NCER_101453 [Nosema ceranae BRL01]
Length = 327
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 134/311 (43%), Positives = 196/311 (63%), Gaps = 10/311 (3%)
Query: 141 TIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK--LRQEILM 198
L P +LAPMV SEL WR+L+RRYG+ +CYT MV+ FI K L
Sbjct: 2 NFLKNLKKPYKVLAPMVGNSELAWRILARRYGADICYTEMVNCDTFIRSKINPLSNRWYT 61
Query: 199 STPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL 258
+ DRPLIIQ CGND + + + + + +CD IDIN+GCPQ +A++G+YG++L DD
Sbjct: 62 TNKIDRPLIIQICGNDVNKMLKVSLILQEYCDAIDINLGCPQEIARKGNYGSFLMDDLLK 121
Query: 259 LTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL 318
+ +V+ L ++VPV+CKIRI++ + K+VEYA+M+E+AGC++L VHGRT DQRG+NTGL
Sbjct: 122 VKEIVTVLSNNLKVPVTCKIRIFESIEKSVEYAKMIEQAGCKMLTVHGRTRDQRGLNTGL 181
Query: 319 ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ-TR 377
ASW+HI A++ +L IPVI+NGNI +D++ C+ T GVM AE +LYNP +F + ++
Sbjct: 182 ASWDHIRAIKASLNIPVISNGNIINNSDIDNCVEYTKCDGVMVAETHLYNPLIFIKRHSK 241
Query: 378 PAWELASEYLDLVAQ--YPVRLQYARGHVFNMCHHLLT-LPENSDVRLLVGKTNHIKDLR 434
+ EYL++ + + + H F + L PE S+ + + KT +KD
Sbjct: 242 TNISIYKEYLNIFLENYNEYDIHTIKSHTFKLLKKFLKQYPEFSE-HINLCKT--LKDYI 298
Query: 435 KAVDMLRERFI 445
D+L E FI
Sbjct: 299 NLCDVL-ETFI 308
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK--LRQEILMSTPE 132
L P +LAPMV SEL WR+L+RRYG+ +CYT MV+ FI K L +
Sbjct: 6 NLKKPYKVLAPMVGNSELAWRILARRYGADICYTEMVNCDTFIRSKINPLSNRWYTTNKI 65
Query: 133 DRPLIIQ 139
DRPLIIQ
Sbjct: 66 DRPLIIQ 72
>gi|448124633|ref|XP_004204973.1| Piso0_000262 [Millerozyma farinosa CBS 7064]
gi|358249606|emb|CCE72672.1| Piso0_000262 [Millerozyma farinosa CBS 7064]
Length = 423
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 142/363 (39%), Positives = 204/363 (56%), Gaps = 24/363 (6%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ----E 195
++++ +GSP+ I+APMVD SEL WR+LSRRYG+ LCYTPM A F D+K RQ E
Sbjct: 9 KSLYNSIGSPKKIVAPMVDQSELAWRILSRRYGADLCYTPMFHARLFATDEKYRQNMWSE 68
Query: 196 ILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
+ DRPLI+QFC ND+ L +AA+L E CD +D+N+GCPQ +AK+G YGA+L DD
Sbjct: 69 LDGDKELDRPLIVQFCANDTDYLLKAAQLVEDKCDAVDLNLGCPQGIAKKGKYGAFLMDD 128
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
W L+ L+ +L ++ V+ KIRIY D K++EYARM+ AG Q + +HGRT + +G
Sbjct: 129 WTLIHKLIRTLHDNLKCAVTAKIRIYDDWEKSLEYARMVLDAGAQFITIHGRTREMKGQV 188
Query: 316 TGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
TGLA+WE + +R+ L +NGNI D+E C T GVM+AEGNLYNP F
Sbjct: 189 TGLANWEILKYLRENLPEDQVFFSNGNILYPEDIERCKTVTKCDGVMSAEGNLYNPGTFW 248
Query: 374 GQTRPAW-------ELASEYLDLVAQYP--VRLQYARGHVFNMCHHLLTLPENSDVRLLV 424
++ ++ EY ++V P + H F + H L + ++R ++
Sbjct: 249 TESDDKEKQYPRVDKIIREYFEIVKTCPGSASRHAMKAHFFKLLHAFLEV--RRELRPVI 306
Query: 425 GKTN---HIKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSSNHH----NLSLPPWICQP 477
GKT+ KD V + E D ++ + + ++P W CQP
Sbjct: 307 GKTSVHADFKDWESIVVKVEEIVADIYKSENIEELDVIETGKLEYWGGSYKTIPYWRCQP 366
Query: 478 YVR 480
Y R
Sbjct: 367 YFR 369
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 48/71 (67%), Gaps = 4/71 (5%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ----EILM 128
+ +GSP+ I+APMVD SEL WR+LSRRYG+ LCYTPM A F D+K RQ E+
Sbjct: 12 YNSIGSPKKIVAPMVDQSELAWRILSRRYGADLCYTPMFHARLFATDEKYRQNMWSELDG 71
Query: 129 STPEDRPLIIQ 139
DRPLI+Q
Sbjct: 72 DKELDRPLIVQ 82
>gi|260801020|ref|XP_002595394.1| hypothetical protein BRAFLDRAFT_119015 [Branchiostoma floridae]
gi|229280640|gb|EEN51406.1| hypothetical protein BRAFLDRAFT_119015 [Branchiostoma floridae]
Length = 212
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 118/196 (60%), Positives = 152/196 (77%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L R+++APMVD SELPWRLLSRR+G L YTPM A F ++ ++ + + PEDRP
Sbjct: 17 LKKARYVVAPMVDQSELPWRLLSRRHGCQLAYTPMFHAALFSREETYFRDAMQTCPEDRP 76
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LI+QFC ND L +AA LA+ HCD ID+N+GCPQ +A+RGHYGA+LQDDW L+ LVS+
Sbjct: 77 LIVQFCANDPDILVQAALLAQDHCDAIDLNLGCPQSIARRGHYGAFLQDDWDLIRRLVSA 136
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+ + VPV+CKIR++QDV +TVEYA+MLE+AGCQLL VHGRT +Q+G TGLASW+HI
Sbjct: 137 VHERCSVPVTCKIRVFQDVKRTVEYAQMLEKAGCQLLTVHGRTKEQKGSLTGLASWDHIK 196
Query: 326 AVRKALTIPVIANGNI 341
AV+ ++ IPV ANGNI
Sbjct: 197 AVKDSVKIPVFANGNI 212
Score = 75.9 bits (185), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
L R+++APMVD SELPWRLLSRR+G L YTPM A F ++ ++ + + PEDRP
Sbjct: 17 LKKARYVVAPMVDQSELPWRLLSRRHGCQLAYTPMFHAALFSREETYFRDAMQTCPEDRP 76
Query: 136 LIIQ 139
LI+Q
Sbjct: 77 LIVQ 80
>gi|151946084|gb|EDN64315.1| tRNA dihydrouridine synthase [Saccharomyces cerevisiae YJM789]
gi|259148496|emb|CAY81741.1| Dus1p [Saccharomyces cerevisiae EC1118]
gi|365763678|gb|EHN05204.1| Dus1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 423
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 145/372 (38%), Positives = 210/372 (56%), Gaps = 38/372 (10%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE---I 196
R +F ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++
Sbjct: 20 RQLFDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSS 79
Query: 197 LMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
L + DRPL++QFC ND + L AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W
Sbjct: 80 LDGSSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEW 139
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
L+ NL+++L + ++VPV+ KIRI+ D K++ YA+M+ AG Q L VHGR +Q+G T
Sbjct: 140 DLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQKT 199
Query: 317 GLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT- 373
GLA+WE I +R L + ANGNI D+ C+ G VM+AEGNLYNP +F
Sbjct: 200 GLANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFNV 259
Query: 374 GQTRPAW-------ELASEYLDLVAQYPVRLQYARGHVFNMCHHLLT-----LPENSDVR 421
QT+ ++ EY +V + Q ++ M H LP ++D+R
Sbjct: 260 DQTKNKEKIFPRVDKIIREYFQIVKE----CQESKASKTAMKSHFFKILRPFLPHHTDIR 315
Query: 422 LLVGKTNH-----------IKDLRKAVDMLRER-FIDYHEGRKLWPPPNYPMSSNHHNLS 469
+ N +K + K V + E+ ID + + ++ S +
Sbjct: 316 STLATMNAKATWEEWEEQVVKPVEKVVQEIFEQPDIDIKDEITIGEKQSWGGSYR----T 371
Query: 470 LPPWICQPYVRP 481
+P W CQPY RP
Sbjct: 372 VPYWRCQPYFRP 383
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE---ILMS 129
+ ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++ L
Sbjct: 23 FDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLDG 82
Query: 130 TPEDRPLIIQ 139
+ DRPL++Q
Sbjct: 83 SSVDRPLVVQ 92
>gi|402580526|gb|EJW74476.1| hypothetical protein WUBG_14616, partial [Wuchereria bancrofti]
Length = 245
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 119/245 (48%), Positives = 165/245 (67%)
Query: 166 LLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLA 225
++ R++G+HLC++PM+ A F+ D R+ L + +DRPL++QFC ND L A +L
Sbjct: 1 MMLRKHGAHLCFSPMIHAQLFVTDATYRRTALSTCLDDRPLVVQFCANDPVILLNACQLV 60
Query: 226 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN 285
E CDG+D+N+GCPQ++AKRG YGAYLQ+D L+ +V+ L ++P+SCKIRI QD+N
Sbjct: 61 ENFCDGVDLNLGCPQLIAKRGRYGAYLQEDLKLICEMVTLLHSRSRLPLSCKIRILQDIN 120
Query: 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLA 345
+TV YAR L +AG +L VHGRT +QRG NTGLA W + A+ A+ +PV+ANGNIQ
Sbjct: 121 ETVAYARALVKAGACMLTVHGRTREQRGPNTGLADWYAMRAIVSAVDVPVLANGNIQLPG 180
Query: 346 DVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVF 405
DV+ CL TG + +M+AEG L NP LF + W A EYLD +Y + R H+F
Sbjct: 181 DVDRCLEITGASAIMSAEGILSNPYLFEKRHEVNWTAAREYLDFAERYESTISAVRAHLF 240
Query: 406 NMCHH 410
+CHH
Sbjct: 241 RICHH 245
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 31/44 (70%)
Query: 96 LLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
++ R++G+HLC++PM+ A F+ D R+ L + +DRPL++Q
Sbjct: 1 MMLRKHGAHLCFSPMIHAQLFVTDATYRRTALSTCLDDRPLVVQ 44
>gi|6323560|ref|NP_013631.1| Dus1p [Saccharomyces cerevisiae S288c]
gi|1730621|sp|P53759.1|DUS1_YEAST RecName: Full=tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 1
gi|587531|emb|CAA86498.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285813922|tpg|DAA09817.1| TPA: Dus1p [Saccharomyces cerevisiae S288c]
Length = 423
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 145/372 (38%), Positives = 210/372 (56%), Gaps = 38/372 (10%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE---I 196
R +F ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++
Sbjct: 20 RQLFDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSS 79
Query: 197 LMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
L + DRPL++QFC ND + L AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W
Sbjct: 80 LDGSSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEW 139
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
L+ NL+++L + ++VPV+ KIRI+ D K++ YA+M+ AG Q L VHGR +Q+G T
Sbjct: 140 DLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQKT 199
Query: 317 GLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT- 373
GLA+WE I +R L + ANGNI D+ C+ G VM+AEGNLYNP +F
Sbjct: 200 GLANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFNV 259
Query: 374 GQTRPAW-------ELASEYLDLVAQYPVRLQYARGHVFNMCHHLLT-----LPENSDVR 421
GQT+ ++ EY +V + Q ++ M H LP ++D+R
Sbjct: 260 GQTKNKEKIFPRVDKIIREYFQIVKE----CQESKASKTAMKSHFFKILRPFLPHHTDIR 315
Query: 422 LLVGKTNH-----------IKDLRKAVDMLRER-FIDYHEGRKLWPPPNYPMSSNHHNLS 469
+ N +K + K V + E+ I + + ++ S +
Sbjct: 316 STLATMNAKATWEEWEEQVVKPVEKVVQEIFEQPDIAIKDEITIGEKQSWGGSYR----T 371
Query: 470 LPPWICQPYVRP 481
+P W CQPY RP
Sbjct: 372 VPYWRCQPYFRP 383
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE---ILMS 129
+ ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++ L
Sbjct: 23 FDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLDG 82
Query: 130 TPEDRPLIIQ 139
+ DRPL++Q
Sbjct: 83 SSVDRPLVVQ 92
>gi|344230040|gb|EGV61925.1| Dus-domain-containing protein [Candida tenuis ATCC 10573]
Length = 414
Score = 261 bits (668), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 211/370 (57%), Gaps = 24/370 (6%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ----E 195
R ++ +GSP+ I+APMVD SEL WR+LSRRYG+ LCYTPM A F ++K R+ E
Sbjct: 4 RALYKAIGSPKTIVAPMVDQSELAWRILSRRYGAELCYTPMFHARLFATEEKYRKNMWSE 63
Query: 196 ILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
+ DRP+I+QFC ND + L +AAKL E CD +D+N+GCPQ +A++G+YGA+L DD
Sbjct: 64 FDGNEDIDRPVIVQFCANDPEYLLQAAKLVENKCDAVDLNLGCPQGIARKGNYGAFLMDD 123
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
W L+ L+++L + + VPV+ KIR+Y D K++ YARM+ AG Q L +HGRT D +G
Sbjct: 124 WELVRKLITNLHENLSVPVTAKIRVYDDWEKSLAYARMVLDAGAQFLTIHGRTRDMKGQL 183
Query: 316 TGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
TGLA+W+ + ++ L +NGNI D++ C+ G VM+AEGNLYNP +F
Sbjct: 184 TGLANWDILKYLKDNLPEDQVFFSNGNIIYPNDLQRCMNHVGCDAVMSAEGNLYNPGVFW 243
Query: 374 GQTRPAW-------ELASEYLDLVAQYPVRLQY--ARGHVFNMCHHLLTLPENSDVRLLV 424
+T +L EY +++ +YP + H F + H L + + ++R ++
Sbjct: 244 TETNEKEKQFPRVDKLLREYFEILREYPTDANKHAMKAHFFKILHEFLNV--HKELRPVI 301
Query: 425 GKTN---HIKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSSNH----HNLSLPPWICQP 477
G+T+ ++ D V + ++ + + + +P W CQP
Sbjct: 302 GRTSVHANMDDWDAIVKQVEAAVAKIYQQDDISDLDVIKVGEDESWGGQYREVPYWRCQP 361
Query: 478 YVRPTPEQQE 487
Y R +++
Sbjct: 362 YFRRVDGEKQ 371
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 48/71 (67%), Gaps = 4/71 (5%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ----EILM 128
+ +GSP+ I+APMVD SEL WR+LSRRYG+ LCYTPM A F ++K R+ E
Sbjct: 7 YKAIGSPKTIVAPMVDQSELAWRILSRRYGAELCYTPMFHARLFATEEKYRKNMWSEFDG 66
Query: 129 STPEDRPLIIQ 139
+ DRP+I+Q
Sbjct: 67 NEDIDRPVIVQ 77
>gi|365759171|gb|EHN00977.1| Dus1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 423
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 144/371 (38%), Positives = 209/371 (56%), Gaps = 36/371 (9%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEI--- 196
R +F ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++
Sbjct: 20 RQLFDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSP 79
Query: 197 LMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
L + DRPL++QFC ND ++L AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W
Sbjct: 80 LDGSDGDRPLVVQFCANDPEHLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEW 139
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
L+ NL+S+L + ++V V+ KIRI+ D K+++YA+M+ AG Q L VHGR +Q+G T
Sbjct: 140 DLIHNLISTLHKNLKVAVTAKIRIFDDREKSLDYAKMVLDAGAQFLTVHGRVREQKGQKT 199
Query: 317 GLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT- 373
GLA WE I +R L + ANGN+ D+ C+ G VM+AEGNLYNP +F
Sbjct: 200 GLADWETIKYLRDELPKETVFFANGNVLYPEDISRCMEHIGADAVMSAEGNLYNPGVFNV 259
Query: 374 ------GQTRPAWE-LASEYLDLVAQYPVRLQYARGHVFNMCHHLLT-----LPENSDVR 421
+T P + + EY +V + Q ++ M H LP++ D+R
Sbjct: 260 DKTEDKDKTFPRVDKIIREYFQIVKE----CQESKASRTAMKSHFFKILRPFLPQHIDIR 315
Query: 422 LLVGKTNH-----------IKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSL 470
+ N +K + K V + E+ D K+ P ++ ++
Sbjct: 316 SELATMNAKASWEEWEEKIVKPVEKVVQDIFEQ-PDIELKDKIMVGEKQPWGGSYR--TV 372
Query: 471 PPWICQPYVRP 481
P W CQPY RP
Sbjct: 373 PYWRCQPYFRP 383
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEI---LMS 129
+ ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++ L
Sbjct: 23 FDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSPLDG 82
Query: 130 TPEDRPLIIQ 139
+ DRPL++Q
Sbjct: 83 SDGDRPLVVQ 92
>gi|190408164|gb|EDV11429.1| tRNA dihydrouridine synthase [Saccharomyces cerevisiae RM11-1a]
Length = 423
Score = 261 bits (667), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 144/369 (39%), Positives = 210/369 (56%), Gaps = 32/369 (8%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE---I 196
R +F ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++
Sbjct: 20 RQLFDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSS 79
Query: 197 LMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
L + DRPL++QFC ND + L AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W
Sbjct: 80 LDGSSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEW 139
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
L+ NL ++L + ++VPV+ KIRI+ D K++ YA+M+ AG Q L VHGR +Q+G T
Sbjct: 140 DLIHNLTNTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQKT 199
Query: 317 GLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT- 373
GLA+WE I +R L + ANGNI D+ C+ G VM+AEGNLYNP +F
Sbjct: 200 GLANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFNV 259
Query: 374 GQTRPAWELASEYLDLVAQYPVRL----QYARGHVFNMCHHLLT-----LPENSDVRLLV 424
QT+ ++ ++ +Y R+ Q ++ M H LP ++D+R +
Sbjct: 260 DQTKNKEKIFPRVDKIIREY-FRIVKECQESKASKTAMKSHFFKILRPFLPHHTDIRSTL 318
Query: 425 GKTNH-----------IKDLRKAVDMLRER-FIDYHEGRKLWPPPNYPMSSNHHNLSLPP 472
N +K + K V + E+ ID + + ++ S ++P
Sbjct: 319 ATMNAKATWEEWEEQVVKPVEKVVQEIFEQPDIDIKDEITIGEKQSWGGSYR----TVPY 374
Query: 473 WICQPYVRP 481
W CQPY RP
Sbjct: 375 WRCQPYFRP 383
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE---ILMS 129
+ ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++ L
Sbjct: 23 FDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLDG 82
Query: 130 TPEDRPLIIQ 139
+ DRPL++Q
Sbjct: 83 SSVDRPLVVQ 92
>gi|403363281|gb|EJY81383.1| tRNA-dihydrouridine synthase [Oxytricha trifallax]
Length = 438
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 135/343 (39%), Positives = 204/343 (59%), Gaps = 10/343 (2%)
Query: 143 FPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 202
+ +GSP+FI+APMVD SELP+R+L+R+Y + LCYTPM F + R+E PE
Sbjct: 41 YRSIGSPKFIVAPMVDQSELPYRMLTRKYKAQLCYTPMFHGRMFSESEGYRKEFFCPHPE 100
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
DRPL +QFC ND + L +AA+ E CD +DIN GCPQ +A++G YG++L + ++ +L
Sbjct: 101 DRPLSVQFCANDPQVLLKAARYVENDCDAVDINFGCPQGIARKGKYGSFLLEKTEIIRSL 160
Query: 263 VSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
V++L Q ++VPV+CKIR + +T++ A+M+E GC +L VHGRT + TG A+W+
Sbjct: 161 VTTLAQNLKVPVTCKIRCLPNEEETMKLAKMIEECGCAMLVVHGRTREHNKQRTGPANWQ 220
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW-- 380
I ++++L IPVIANG + D ACL TG GVM++E L PALF Q P+
Sbjct: 221 IIKKIKQSLRIPVIANGGMATFEDCMACLEYTGCDGVMSSESILEYPALFDPQ--PSLYN 278
Query: 381 --ELASEYLDLVAQYP--VRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKA 436
E+A EYL++V YP L+ R H+ H +++D+R + + +++ R+
Sbjct: 279 LDEIAFEYLEMVKLYPGEADLKNVRSHIHKFLH--TGFKQHTDLRDKLTTSKTMEEFREI 336
Query: 437 VDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYV 479
V +++ER D +K+ Y S N WI Q +
Sbjct: 337 VLLMQERRKDLPNEKKIGWYHRYWASENKVAGETKTWITQEWT 379
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 46/67 (68%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
+ +GSP+FI+APMVD SELP+R+L+R+Y + LCYTPM F + R+E PE
Sbjct: 41 YRSIGSPKFIVAPMVDQSELPYRMLTRKYKAQLCYTPMFHGRMFSESEGYRKEFFCPHPE 100
Query: 133 DRPLIIQ 139
DRPL +Q
Sbjct: 101 DRPLSVQ 107
>gi|146417549|ref|XP_001484743.1| hypothetical protein PGUG_02472 [Meyerozyma guilliermondii ATCC
6260]
gi|146390216|gb|EDK38374.1| hypothetical protein PGUG_02472 [Meyerozyma guilliermondii ATCC
6260]
Length = 416
Score = 261 bits (666), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 141/371 (38%), Positives = 209/371 (56%), Gaps = 26/371 (7%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 199
R +F +G P I+APMVD SEL WR++SRRYG+ LCYTPM A F ++K RQ +
Sbjct: 9 RELFEAIGRPTTIVAPMVDQSELAWRIISRRYGAELCYTPMFHARLFATEEKYRQNMWSE 68
Query: 200 TPEDR----PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
DR PLI+QFC ND L EAAKL E CD +D+N+GCPQ +AK+G YGA+L DD
Sbjct: 69 QDGDRELDRPLIVQFCANDPNYLLEAAKLVEDKCDAVDLNLGCPQGIAKKGKYGAFLMDD 128
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
W L+ L+ +L ++ PV+ KIR+Y D K++ YA+M+ AG Q + VHGRT D +G
Sbjct: 129 WDLVHKLIRTLHDNLKCPVTAKIRVYDDWEKSLAYAKMVLDAGAQFITVHGRTRDMKGQA 188
Query: 316 TGLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
TGLA+W+ + +R L + ANGNI +D++ C +TG VM+AEGNLYNP +F
Sbjct: 189 TGLANWKVLKYLRDNLPKDQVFFANGNILYPSDLQRCREETGADAVMSAEGNLYNPGVFW 248
Query: 374 GQTRP-------AWELASEYLDLVAQ--YPVRLQYARGHVFNMCHHLLTLPENSDVRLLV 424
+T +L EY ++V + H F + H L + + ++R ++
Sbjct: 249 TKTDNIDKQFPRVDKLLREYFEIVKSCAGEASKHAMKAHFFKILHAFLNV--HKELRPVI 306
Query: 425 GKTN---HIKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSSNHHNL-----SLPPWICQ 476
G+T+ IK+ V+ + + D + K+ + + + ++P W CQ
Sbjct: 307 GRTSVHADIKNWEDIVEQVEKLVQDIYTDEKI-KEKDVITTGEVQDWGGAYKTVPYWRCQ 365
Query: 477 PYVRPTPEQQE 487
PY R +++
Sbjct: 366 PYFRTVNGEKQ 376
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 4/68 (5%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE--- 132
+G P I+APMVD SEL WR++SRRYG+ LCYTPM A F ++K RQ +
Sbjct: 15 IGRPTTIVAPMVDQSELAWRIISRRYGAELCYTPMFHARLFATEEKYRQNMWSEQDGDRE 74
Query: 133 -DRPLIIQ 139
DRPLI+Q
Sbjct: 75 LDRPLIVQ 82
>gi|354545348|emb|CCE42076.1| hypothetical protein CPAR2_806250 [Candida parapsilosis]
Length = 434
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 139/377 (36%), Positives = 212/377 (56%), Gaps = 36/377 (9%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM- 198
R ++ +G P+ I+APMVD SEL WR+LSR+YG+ LCYTPM A F+ K R+ +
Sbjct: 20 RNLYNAIGQPKTIVAPMVDQSELAWRILSRKYGADLCYTPMFHARLFVTSDKYRKSMFND 79
Query: 199 --STPE-DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
P+ DRPLI+QFC ND L +AAKL E CD +D+N+GCPQ +AK+G YG++L +D
Sbjct: 80 QDGNPKYDRPLIVQFCANDPDTLLQAAKLVEGQCDAVDLNLGCPQGIAKKGKYGSFLMED 139
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
W L+ L+++L + + +PV+ KIR+Y D K+++YA+M+ AG Q L VHGRT + +G N
Sbjct: 140 WGLIHKLIANLHKNLSIPVTAKIRVYDDYEKSLQYAKMVLDAGAQFLTVHGRTREMKGQN 199
Query: 316 TGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
TGLA+W+ + +R L ANGNI D++ C T VM+AEGNLYNP +F
Sbjct: 200 TGLANWKILRYLRDNLPQDQVFFANGNILYPDDLQRCADATKCDAVMSAEGNLYNPGVFW 259
Query: 374 GQTRP-------AWELASEYLDLVAQ---YPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+T ++ EY ++V +P + H F + H L +++R +
Sbjct: 260 TKTNDIDSQFPRVDKILREYFEIVKSVDPHPASRHSMKSHFFKLMHEFLN--HRTELRPM 317
Query: 424 VGKT---NHIKDLRKAVDMLRERFIDYHEGRKLWPPPNYP----------MSSNHHNLSL 470
+GKT + + K V+ + ER + ++ PN+ H ++
Sbjct: 318 IGKTSVHSSFDEWEKIVEEV-ERIVK----EEIVSQPNFKGLDVVVDGKVQEWGGHYKTV 372
Query: 471 PPWICQPYVRPTPEQQE 487
P W CQP+ R +++
Sbjct: 373 PYWRCQPFFRKVDGERQ 389
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM---S 129
+ +G P+ I+APMVD SEL WR+LSR+YG+ LCYTPM A F+ K R+ +
Sbjct: 23 YNAIGQPKTIVAPMVDQSELAWRILSRKYGADLCYTPMFHARLFVTSDKYRKSMFNDQDG 82
Query: 130 TPE-DRPLIIQ 139
P+ DRPLI+Q
Sbjct: 83 NPKYDRPLIVQ 93
>gi|260947234|ref|XP_002617914.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238847786|gb|EEQ37250.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 415
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 137/375 (36%), Positives = 210/375 (56%), Gaps = 34/375 (9%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM- 198
R +F ++G P+ I+APMVD SEL WR+LSRRYG+ LCYTPM A F ++K R ++
Sbjct: 9 RALFEQIGRPKTIVAPMVDQSELAWRILSRRYGAELCYTPMFHARLFATEEKYRNKMWSE 68
Query: 199 ---STPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
+DRPL++QFC ND + L +AAK E CD +D+N+GCPQ +A++G+YGA+L DD
Sbjct: 69 WDGDREKDRPLVVQFCANDPEYLLQAAKFVEDKCDAVDLNLGCPQGIARKGNYGAFLMDD 128
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
W L+ L+ L ++ PV+ KIR+Y D K++EYA+M+ AG Q + +HGRT D +G
Sbjct: 129 WDLVYKLIRKLHDNLKCPVTAKIRVYDDWEKSLEYAKMVLSAGAQFITIHGRTRDMKGQA 188
Query: 316 TGLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF- 372
TGLA+W+ + +R L + ANGNI +D+ C+ + VM+AEGNLYNP +F
Sbjct: 189 TGLANWKILRYLRDNLPSDQVFFANGNILYPSDINRCIDEVSCDAVMSAEGNLYNPGVFW 248
Query: 373 ------TGQTRPAWELASEYLDLVAQYPVRLQYA--RGHVFNMCHHLLTLPENSDVRLLV 424
Q ++ EY D+V P + H F + H L + + ++R ++
Sbjct: 249 TKDDDKDKQFARVDKMLREYFDIVRTCPGEASRVAMKAHFFKLLHAFLNV--HKELRPII 306
Query: 425 GKTNHIKDLRKAVDMLR--ERFIDYHEGRKLWPPPNYP----------MSSNHHNLSLPP 472
G+T+ D D+++ E ++ ++ PN S ++P
Sbjct: 307 GQTSVNADFSVWDDIVKKVEAIVE-----DIFAQPNIAELDVITEGELQSWGGKYKTIPY 361
Query: 473 WICQPYVRPTPEQQE 487
W CQPY R +++
Sbjct: 362 WRCQPYFRTVDGEKQ 376
>gi|149240295|ref|XP_001526023.1| tRNA-dihydrouridine synthase 1 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450146|gb|EDK44402.1| tRNA-dihydrouridine synthase 1 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 516
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 145/377 (38%), Positives = 210/377 (55%), Gaps = 46/377 (12%)
Query: 137 IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ-- 194
++ R ++ +G P+ I+APMVD SEL WR+LSRRYG+ LCYTPM + F D K RQ
Sbjct: 78 MLGRQLYNSIGQPKTIVAPMVDHSELAWRILSRRYGADLCYTPMFHSRLFATDPKYRQSM 137
Query: 195 --EILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 252
E S DRPLI+QFC ND L +AAKL E CD +D+N+GCPQ +A+RG YGA+L
Sbjct: 138 WNEKDGSRDNDRPLIVQFCANDPDYLLQAAKLVENQCDAVDLNLGCPQGIARRGKYGAFL 197
Query: 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR 312
DDW L+ L+ +L + VPV+ KIR+Y D K++EYA+M+ AG Q + +HGRT + +
Sbjct: 198 MDDWELVHKLIRTLHDNLSVPVTAKIRVYDDWEKSLEYAKMVLDAGAQFITIHGRTREMK 257
Query: 313 GMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
G NTGLA W+ + +R L ANGNI +D++ C + G VM+AEGNLYNP
Sbjct: 258 GQNTGLADWKILKHLRDNLPEDQVFFANGNILYPSDLKRCADEVGCDAVMSAEGNLYNPG 317
Query: 371 LF-------TGQTRPAWELASEYLDLVAQY--PVRLQYARGHVFNMCHHLLTLPENSDVR 421
+F Q +L EY ++V + P + H F + + L + ++++R
Sbjct: 318 VFWTKDNDIEKQFPRVDKLLREYFEIVKEVDSPASTHVIKSHFFKLLNSFLKV--HTELR 375
Query: 422 LLVGKTNHIKDLRKAVDMLRERFIDYHE--------GRKLWPPPNY---------PMSS- 463
+G T+ +R+ F D+++ +++ PN P+ S
Sbjct: 376 PKIGGTS-----------VRQPFEDWNKIVEEVEQIVEEIYNKPNIKEIDVIEDGPVESW 424
Query: 464 NHHNLSLPPWICQPYVR 480
H +P W CQPY R
Sbjct: 425 GGHYKKVPYWRCQPYFR 441
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ----EILM 128
+ +G P+ I+APMVD SEL WR+LSRRYG+ LCYTPM + F D K RQ E
Sbjct: 84 YNSIGQPKTIVAPMVDHSELAWRILSRRYGADLCYTPMFHSRLFATDPKYRQSMWNEKDG 143
Query: 129 STPEDRPLIIQ 139
S DRPLI+Q
Sbjct: 144 SRDNDRPLIVQ 154
>gi|325188155|emb|CCA22696.1| tRNAdihydrouridine synthase putative [Albugo laibachii Nc14]
Length = 367
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 127/313 (40%), Positives = 184/313 (58%), Gaps = 12/313 (3%)
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP 201
F +GSP+ I+APMVD SEL +R+L R +G+ LCYTPM + F ++ R +
Sbjct: 12 FFRSIGSPQRIVAPMVDQSELAFRMLCRHHGAQLCYTPMFHSRLFAESQEYRTRMFEQHV 71
Query: 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTN 261
DRPLI+QFCGND + AAK E HCD +DIN+GCPQ +A++G+YGA+L + +
Sbjct: 72 RDRPLIVQFCGNDGDTMVAAAKYVEGHCDAVDINLGCPQGIARKGNYGAFLMKEKTRVCE 131
Query: 262 LVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+V L V VPV+CKIR++ D +T+E++RMLE+AGC LL +HGRT + + G W
Sbjct: 132 IVEKLVAEVAVPVTCKIRVFPDEAETIEFSRMLEKAGCDLLVIHGRTKEMNKVTVGQVDW 191
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPA-- 379
E I ++ L+IPVIANG I+ D+ CL T GVM++E L NPALF R
Sbjct: 192 EIIKRIKSTLSIPVIANGGIETADDIVKCLEATSADGVMSSEAILGNPALFDEPFRNDPL 251
Query: 380 -------WELASEYLDLVAQY-PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIK 431
++LA EY+D Y P ++ R H+F + LT + D+R + + N
Sbjct: 252 DPKGPRYFDLAKEYMDFATIYPPGNVKIVRAHLFKLLFEDLT--HHIDLRSALARANTFS 309
Query: 432 DLRKAVDMLRERF 444
+++ + L +R
Sbjct: 310 EMKHLLQELEDRL 322
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%)
Query: 71 DAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
D + +GSP+ I+APMVD SEL +R+L R +G+ LCYTPM + F ++ R +
Sbjct: 11 DFFRSIGSPQRIVAPMVDQSELAFRMLCRHHGAQLCYTPMFHSRLFAESQEYRTRMFEQH 70
Query: 131 PEDRPLIIQ 139
DRPLI+Q
Sbjct: 71 VRDRPLIVQ 79
>gi|68482886|ref|XP_714669.1| likely tRNA dihydrouridine synthase [Candida albicans SC5314]
gi|68483082|ref|XP_714575.1| likely tRNA dihydrouridine synthase [Candida albicans SC5314]
gi|46436155|gb|EAK95523.1| likely tRNA dihydrouridine synthase [Candida albicans SC5314]
gi|46436256|gb|EAK95622.1| likely tRNA dihydrouridine synthase [Candida albicans SC5314]
gi|238883810|gb|EEQ47448.1| tRNA-dihydrouridine synthase 1 [Candida albicans WO-1]
Length = 467
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 140/366 (38%), Positives = 208/366 (56%), Gaps = 27/366 (7%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 199
R ++ +G P+ I+APMVD SEL WR+LSRRYG+ LCYTPM A F +K R + +
Sbjct: 49 RQLYNAIGQPKTIVAPMVDQSELAWRILSRRYGAQLCYTPMFHAKLFATQEKYRNSMWTT 108
Query: 200 TPE-----DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
+ DRPL++QFC ND L +AAKL E CD ID+N+GCPQ +A++G YGA+L D
Sbjct: 109 NLDGNKDLDRPLVVQFCANDPDYLLQAAKLIENECDAIDLNLGCPQGIARKGKYGAFLMD 168
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
DW L+ L+ +L + +PV+ KIRIY D K+++YA+M+ AG Q + VHGRT + +G
Sbjct: 169 DWDLVYKLIKNLHDNLSIPVTAKIRIYDDYEKSLKYAKMVLDAGAQFITVHGRTREMKGQ 228
Query: 315 NTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
TGLA+W+ + +R L +NGNI +D++ C ++T VM+AEGNLYNP +F
Sbjct: 229 ATGLANWKILKYLRDNLPQDQVFFSNGNILYPSDIQRCQSETACDAVMSAEGNLYNPGVF 288
Query: 373 -------TGQTRPAWELASEYLDLVAQYPVRL---QYARGHVFNMCHHLLTLPENSDVRL 422
Q ++ EY ++V + L + H F + H L + + ++R
Sbjct: 289 WTLDDNKDKQFPRVDKILREYFEIVKENYDSLASRHAMKSHFFKLLHAFLEV--HKELRP 346
Query: 423 LVGKTNHIKDLR-------KAVDMLRERFIDYHEGRKLWPPPNYPMSS-NHHNLSLPPWI 474
++GK N L K +++E + + + KL N P+ H ++P W
Sbjct: 347 IIGKANVNGPLDQWESIVVKIESLVQEIYSNNPDIEKLDVITNGPIEDWGGHYKTVPYWR 406
Query: 475 CQPYVR 480
CQPY R
Sbjct: 407 CQPYFR 412
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
+ +G P+ I+APMVD SEL WR+LSRRYG+ LCYTPM A F +K R + + +
Sbjct: 52 YNAIGQPKTIVAPMVDQSELAWRILSRRYGAQLCYTPMFHAKLFATQEKYRNSMWTTNLD 111
Query: 133 -----DRPLIIQ 139
DRPL++Q
Sbjct: 112 GNKDLDRPLVVQ 123
>gi|118399013|ref|XP_001031833.1| dihydrouridine synthase [Tetrahymena thermophila]
gi|89286167|gb|EAR84170.1| dihydrouridine synthase [Tetrahymena thermophila SB210]
Length = 444
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 128/306 (41%), Positives = 187/306 (61%), Gaps = 6/306 (1%)
Query: 141 TIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLR--QEILM 198
+ LGSP+++ APMVD SEL +R+L R+YG+ L YTPM+ + + + D+ +
Sbjct: 64 NFYKSLGSPQYVCAPMVDQSELAFRMLCRKYGTTLAYTPMIHS-KVLQDQGYGYLNSVFS 122
Query: 199 STPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL 258
+ EDRPL QFCGN+ L A+ E CD IDIN GCPQ +AKRG YG+YL +
Sbjct: 123 TCQEDRPLFAQFCGNNPDALLAGARYVEDKCDAIDINFGCPQGIAKRGRYGSYLLSEPDT 182
Query: 259 LTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL 318
+ LV L + + +PV+CKIRI + +T+E A+ +E AGC +L VHGRT +Q GL
Sbjct: 183 IVALVKKLHENLSIPVTCKIRILPNRQQTIELAKKIEAAGCSILTVHGRTKEQNKDTVGL 242
Query: 319 ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRP 378
W+ I +++ L+IPV ANG I DV+ CL TGV GVM+AE L NPALF+GQ
Sbjct: 243 CDWDIIKIIKEELSIPVFANGGIYTYEDVQKCLEYTGVDGVMSAESLLENPALFSGQIYD 302
Query: 379 AWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRK-AV 437
E+A EYL+ +YP +++GH+F H L + ++D+R + I++ ++ A+
Sbjct: 303 LDEIALEYLEFAEKYPTPHFFSKGHIFKFLHQGLQV--HTDLRTKLANVKTIEEQKEIAL 360
Query: 438 DMLRER 443
+M + R
Sbjct: 361 EMKKRR 366
>gi|145551887|ref|XP_001461620.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124429455|emb|CAK94247.1| unnamed protein product [Paramecium tetraurelia]
Length = 360
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 196/332 (59%), Gaps = 5/332 (1%)
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP 201
+ LGSP+FI APMVD SEL +R+L+R+YG+ L YTPM+ + K + E + P
Sbjct: 11 FYKSLGSPKFICAPMVDQSELAFRMLTRKYGTTLAYTPMLHSRIMTESKSYKDEFFTTCP 70
Query: 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTN 261
EDRPL Q CG+D + L +AA + + CD IDIN+GCPQ +A++G YGAYL + +
Sbjct: 71 EDRPLFAQLCGHDPQVLIKAALMIQDQCDAIDINLGCPQGIARKGLYGAYLLEKREQVLT 130
Query: 262 LVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+V L+Q + VPV+CKIR+++D +T++ + ++ AGC +L VHGRT +Q G W
Sbjct: 131 IVKELKQNINVPVTCKIRMFKDRKRTLDLTKDIQEAGCSILTVHGRTKEQNKDFVGQCDW 190
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWE 381
I +++ L IPV ANG I +DVE CL +T V VM++E L NPALF+G+ + +
Sbjct: 191 TIIAEIKQILQIPVFANGGIYTWSDVERCLQETKVDAVMSSEALLENPALFSGEIKDLND 250
Query: 382 LASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLR 441
LA EY+ QY RL + H+F + + L + +D+R +G ++ + V L+
Sbjct: 251 LALEYMQFAKQYNARLAEIKAHLFKLLYTGLQIF--TDLRSKLGSAKTYEEHLEVVIELK 308
Query: 442 ERFIDYHEGRKL-WPP--PNYPMSSNHHNLSL 470
+ D + KL W N+ N+ + SL
Sbjct: 309 NKRADVPKEDKLGWYKRYQNFKQPQNNKDKSL 340
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 44/67 (65%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
+ LGSP+FI APMVD SEL +R+L+R+YG+ L YTPM+ + K + E + PE
Sbjct: 12 YKSLGSPKFICAPMVDQSELAFRMLTRKYGTTLAYTPMLHSRIMTESKSYKDEFFTTCPE 71
Query: 133 DRPLIIQ 139
DRPL Q
Sbjct: 72 DRPLFAQ 78
>gi|50420411|ref|XP_458741.1| DEHA2D06512p [Debaryomyces hansenii CBS767]
gi|49654408|emb|CAG86885.1| DEHA2D06512p [Debaryomyces hansenii CBS767]
Length = 423
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 138/370 (37%), Positives = 206/370 (55%), Gaps = 24/370 (6%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ----E 195
R ++ +G P+ I+APMVD SEL WR+LSRRYG+ LCYTPM A F ++K R E
Sbjct: 10 RQLYDAIGQPKTIVAPMVDQSELAWRILSRRYGADLCYTPMFHARLFATEEKYRNNMWSE 69
Query: 196 ILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
+ +DRPLI+QFC NDS L +AAK E CD +D+N+GCPQ +AK+G+YGA+L DD
Sbjct: 70 LDGDKEKDRPLIVQFCANDSDYLLKAAKFVEDKCDAVDLNLGCPQGIAKKGNYGAFLMDD 129
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
W L+ L+ +L ++ PV+ KIR+Y D K++EYA+++ AG Q + +HGRT D +G
Sbjct: 130 WDLVYKLIKNLHDNLKCPVTAKIRVYDDWEKSLEYAKLVLNAGAQFITIHGRTRDMKGQA 189
Query: 316 TGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF- 372
TGLA+WE + ++ L ANGNI +D+E C VM+AEGNLYNP +F
Sbjct: 190 TGLANWEILKYLKDNLPKDQVFFANGNILYPSDLERCTNVVRCDAVMSAEGNLYNPGVFW 249
Query: 373 ------TGQTRPAWELASEYLDLVAQYP--VRLQYARGHVFNMCHHLLTLPENSDVRLLV 424
Q + EY ++V P + H F + H L++ ++++R ++
Sbjct: 250 TKSDDIDKQFARVDRMLREYFEIVKSCPGEASKHSMKAHFFKLLHAFLSV--HTELRPVI 307
Query: 425 GKTN---HIKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSS----NHHNLSLPPWICQP 477
G+T+ +I D V + E +E + + ++P W CQP
Sbjct: 308 GRTSVHANIDDWEAIVVKVEEIVAKIYEQSNIVELDVITVGEVQTWGGAYKTIPYWRCQP 367
Query: 478 YVRPTPEQQE 487
Y R +++
Sbjct: 368 YFRKVNGEKQ 377
>gi|448521763|ref|XP_003868569.1| Dus1 protein [Candida orthopsilosis Co 90-125]
gi|380352909|emb|CCG25665.1| Dus1 protein [Candida orthopsilosis]
Length = 474
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 132/375 (35%), Positives = 213/375 (56%), Gaps = 26/375 (6%)
Query: 137 IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEI 196
++ R ++ +G P+ I+APMVD SEL WR+LSR+YG+ LCYTPM A F+ K R+ +
Sbjct: 57 LLGRELYNAIGQPKTIVAPMVDQSELAWRILSRKYGADLCYTPMFHARLFVTSDKYRKSM 116
Query: 197 LMSTPE----DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 252
DRPLI+QFC ND + L +AAKL E CD +D+N+GCPQ +AK+G YG++L
Sbjct: 117 FNDQDGNPRYDRPLIVQFCANDPEILLQAAKLVENQCDAVDLNLGCPQGIAKKGKYGSFL 176
Query: 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR 312
+DW L+ L+ L + +PV+ KIR+Y D K+++YA+M+ AG Q + VHGRT + +
Sbjct: 177 MEDWDLIHKLIRKLHNNLSIPVTAKIRVYDDYEKSLQYAKMVLDAGAQFITVHGRTREMK 236
Query: 313 GMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
G NTGLASW+ + +R L +NGNI D++ C +T VM+AEGNLYNP
Sbjct: 237 GQNTGLASWKILRYLRDKLPQDQVFFSNGNILYPNDLQRCSDKTKCDAVMSAEGNLYNPG 296
Query: 371 LFTGQTRPAW-------ELASEYLDLVAQ---YPVRLQYARGHVFNMCHHLLTLPENSDV 420
+F +T ++ +Y ++V +P + H F + H L + +++
Sbjct: 297 VFWTKTDDVDMQFPRVDKILRQYFEIVKSVDPHPASRHSMKSHFFKLMHEFLNV--RTEL 354
Query: 421 RLLVGKTN---HIKDLRKAVD----MLRERFIDYHEGRKLWPPPNYPMSS-NHHNLSLPP 472
R ++GKT+ ++ K V+ ++++ + + + + + H ++P
Sbjct: 355 RPMIGKTSVHSSFEEWEKIVEEVERIVKDEILTLSNFKDMDVVVDGDLQKWGGHYKTVPY 414
Query: 473 WICQPYVRPTPEQQE 487
W CQP+ R +++
Sbjct: 415 WRCQPFFRKVDGERQ 429
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
+ +G P+ I+APMVD SEL WR+LSR+YG+ LCYTPM A F+ K R+ +
Sbjct: 63 YNAIGQPKTIVAPMVDQSELAWRILSRKYGADLCYTPMFHARLFVTSDKYRKSMFNDQDG 122
Query: 133 ----DRPLIIQ 139
DRPLI+Q
Sbjct: 123 NPRYDRPLIVQ 133
>gi|254567437|ref|XP_002490829.1| tRNA-dihydrouridine synthase 1 [Komagataella pastoris GS115]
gi|238030625|emb|CAY68549.1| tRNA-dihydrouridine synthase 1 [Komagataella pastoris GS115]
gi|328351211|emb|CCA37611.1| tRNA-dihydrouridine synthase 1 [Komagataella pastoris CBS 7435]
Length = 407
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 205/365 (56%), Gaps = 25/365 (6%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM- 198
R ++ +G P+ I+APMVD SEL WR+LSRRYG+ LCYTPM A F +K R++++
Sbjct: 10 RALYEAIGKPKTIVAPMVDQSELAWRILSRRYGADLCYTPMFHAKLFATQEKYRKDMMSE 69
Query: 199 ---STPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
DRPLI+QFC ND + L +AA+L CD +D+N+GCPQ +AK+G+YG++L DD
Sbjct: 70 LDGDEKVDRPLIVQFCANDPEYLLQAARLVADKCDAVDLNLGCPQGIAKKGNYGSFLMDD 129
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
W L+ L+ L + + +PV+ KIR+Y D K++EYA+M+ AG Q L +HGRT + +G
Sbjct: 130 WKLVHRLIKHLHENLSIPVTAKIRVYDDKEKSLEYAKMVLDAGAQFLTIHGRTREMKGQQ 189
Query: 316 TGLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
TGLA+WE + +R L + ANGNI D+ CL + VM+AEGNL+NP +F
Sbjct: 190 TGLANWETLKYIRDNLPDDTVFFANGNILYSDDLGRCLEKVNADAVMSAEGNLFNPGVFW 249
Query: 374 GQTRPAWE-------LASEYLDLVAQYP--VRLQYARGHVFNMCHHLLTLPENSDVRLLV 424
T + + EY +++ P + + H+F + LP ++DVR +
Sbjct: 250 TATEDKEKQFPRLDRIVREYFEVLKTTPGYASRKALKSHLFRLLRTF--LPIHTDVRAEI 307
Query: 425 G---KTNHIKDLRKAV----DMLRERFIDYHEGRKLWPPPNYPMSS-NHHNLSLPPWICQ 476
K + ++ + V + + E + +L + P+ +P W CQ
Sbjct: 308 AAIHKGTTLDEIEEKVVRKIESIVESIFGQEDIEELDSIKDGPIEFWGGSYKEVPYWRCQ 367
Query: 477 PYVRP 481
PY RP
Sbjct: 368 PYFRP 372
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM---- 128
+ +G P+ I+APMVD SEL WR+LSRRYG+ LCYTPM A F +K R++++
Sbjct: 13 YEAIGKPKTIVAPMVDQSELAWRILSRRYGADLCYTPMFHAKLFATQEKYRKDMMSELDG 72
Query: 129 STPEDRPLIIQ 139
DRPLI+Q
Sbjct: 73 DEKVDRPLIVQ 83
>gi|307110102|gb|EFN58339.1| hypothetical protein CHLNCDRAFT_16859, partial [Chlorella
variabilis]
Length = 308
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 140/300 (46%), Positives = 188/300 (62%), Gaps = 16/300 (5%)
Query: 143 FPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 202
F LGSP++ +APMVD SEL +R L+RR+G+ YTPM+ A F+ R E +T +
Sbjct: 5 FRSLGSPKYWVAPMVDQSELAFRQLTRRHGATGAYTPMLHARLFLETPSYRAEHFTTTQQ 64
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
DRPL+ QFC ND L AA+L PH DG+D+N+GCPQ +AKRG YG++L DD PL+ L
Sbjct: 65 DRPLLAQFCANDPDILLSAARLVAPHVDGVDLNLGCPQRIAKRGKYGSFLMDDLPLVERL 124
Query: 263 VSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
V L + VPV+ KIR + V +TV+YA+MLERAG LLA+HGRT +Q+ + A E
Sbjct: 125 VRQLAANLAVPVTVKIRRFDCVQRTVQYAQMLERAGASLLAIHGRTREQKRASEVRAEVE 184
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR----- 377
+I AV++ L IPV+ NGNI+ LAD EA +A TGV GVM+AE L +PALF+ Q R
Sbjct: 185 YIRAVKQGLRIPVLGNGNIRTLADCEALMAATGVDGVMSAESLLADPALFS-QRRLQPGG 243
Query: 378 -----PAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKD 432
L EY D+V +P + +GH F + LT E +D+R + NH +D
Sbjct: 244 AFGHLDGCHLLLEYCDMVELHPTPWRMVKGHAFQLLGPWLT--EFTDLR---EQLNHAQD 298
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 7/107 (6%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LGSP++ +APMVD SEL +R L+RR+G+ YTPM+ A F+ R E +T +DRP
Sbjct: 8 LGSPKYWVAPMVDQSELAFRQLTRRHGATGAYTPMLHARLFLETPSYRAEHFTTTQQDRP 67
Query: 136 LIIQRTIF--PRLGSPRFILAPMVDASEL----PWRLLSR-RYGSHL 175
L+ Q L S ++AP VD +L P R+ R +YGS L
Sbjct: 68 LLAQFCANDPDILLSAARLVAPHVDGVDLNLGCPQRIAKRGKYGSFL 114
>gi|406601374|emb|CCH46984.1| tRNA-dihydrouridine synthase [Wickerhamomyces ciferrii]
Length = 412
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 143/365 (39%), Positives = 204/365 (55%), Gaps = 27/365 (7%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM- 198
R +F +G P+ I+APMVD SEL WR+LSRRYG+ LCYTPM A F +K R+++
Sbjct: 7 RELFNAIGQPKRIVAPMVDQSELAWRILSRRYGATLCYTPMFHAKLFATSEKYRRDMWSE 66
Query: 199 ---STPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
+DRPL++QFC ND L +AAK CD +D+N+GCPQ +AK+G+YGA+L D
Sbjct: 67 WDGDESKDRPLVVQFCANDPDYLLQAAKHVVGKCDAVDLNLGCPQGIAKKGNYGAFLMDH 126
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
W L+ L++ L + +PV+ KIR++++ KT+EYA+M+ AG Q L VHGR +Q+G
Sbjct: 127 WDLVHKLINKLHTELDIPVTAKIRVFEEKEKTLEYAKMVLDAGAQFLTVHGRLREQKGQK 186
Query: 316 TGLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
TGLA WE I +R L + ANGNI D+ CL Q G VM+AEGNLYNP +F
Sbjct: 187 TGLADWEIIKYLRDNLPKDTVFFANGNILYPEDITRCLNQIGCDAVMSAEGNLYNPGVFV 246
Query: 374 GQTRPAWE------LASEYLDLVAQYPVRLQY--ARGHVFNMCHHLLTLPENSDVRLLVG 425
+ + L EY ++V P + H F + LP ++DVR L+
Sbjct: 247 EEDNIDKQFPRVDKLVREYYEIVKNCPGNASKIAMKSHFFKILRPF--LPIHTDVRELIA 304
Query: 426 KTN--HIKDLRKAVDMLRERFI-------DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQ 476
K++ H D + + + E+ + D+ E K+ P + +P W Q
Sbjct: 305 KSSPKHNFDDVEEIVIQVEKIVKEISEKPDFAELDKITTGPVELWGGAYK--QIPYWRAQ 362
Query: 477 PYVRP 481
PY RP
Sbjct: 363 PYFRP 367
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM---- 128
+ +G P+ I+APMVD SEL WR+LSRRYG+ LCYTPM A F +K R+++
Sbjct: 10 FNAIGQPKRIVAPMVDQSELAWRILSRRYGATLCYTPMFHAKLFATSEKYRRDMWSEWDG 69
Query: 129 STPEDRPLIIQ 139
+DRPL++Q
Sbjct: 70 DESKDRPLVVQ 80
>gi|401624451|gb|EJS42508.1| dus1p [Saccharomyces arboricola H-6]
Length = 423
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 140/369 (37%), Positives = 207/369 (56%), Gaps = 32/369 (8%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE---I 196
R +F ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++
Sbjct: 20 RQLFDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSS 79
Query: 197 LMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
L + DRPL++QFC ND + L AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W
Sbjct: 80 LDGSDLDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEW 139
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
L+ NL+++L ++VPV+ KIRI+ D K++ YA+M+ AG Q L VHGR +Q+G T
Sbjct: 140 ELVHNLINTLHNNLKVPVTAKIRIFDDREKSLSYAKMVLDAGAQFLTVHGRIREQKGQKT 199
Query: 317 GLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT- 373
GLA+WE + +R L + ANGN+ D+ C+ G VM+AEGNLYNP +F
Sbjct: 200 GLANWETVKYLRDELPKETVFFANGNVLYPEDISRCMKHIGADAVMSAEGNLYNPGVFNV 259
Query: 374 ------GQTRPAWE-LASEYLDLVA---QYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+T P + + EY +V + + H F + L+ ++D+R
Sbjct: 260 DQTEDKDRTFPRVDKIIREYFQIVKECEESKASRTAMKSHFFKILRPFLS--HHTDIRSK 317
Query: 424 VG-----------KTNHIKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPP 472
+ + N +K + K V + E+ D E + ++ ++P
Sbjct: 318 LATMNAKATWEEWEENIVKPVEKVVQEIFEQ-PDIKEKDDITIGEKQAWGGSYR--TVPY 374
Query: 473 WICQPYVRP 481
W CQPY RP
Sbjct: 375 WRCQPYFRP 383
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE---ILMS 129
+ ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++ L
Sbjct: 23 FDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLDG 82
Query: 130 TPEDRPLIIQ 139
+ DRPL++Q
Sbjct: 83 SDLDRPLVVQ 92
>gi|429961459|gb|ELA41004.1| hypothetical protein VICG_01963 [Vittaforma corneae ATCC 50505]
Length = 341
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 133/309 (43%), Positives = 192/309 (62%), Gaps = 12/309 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK-KLRQEILMSTPE-D 203
+ P LAPMV E +R+L+R+YG+ +CYT MV+ F K I ST D
Sbjct: 13 IKKPWKFLAPMVGNCEQAYRILARKYGADVCYTEMVNCKVFNRSKCNPVDNIWYSTSNID 72
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPL++Q CG+D + + + + CD IDIN GCPQ VAKRGHYG+YLQD+W L++ +V
Sbjct: 73 RPLVVQICGDDPEAMLQTCLSVQDCCDAIDINFGCPQDVAKRGHYGSYLQDEWDLISRIV 132
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
S+ +++P+ CKIR++ + KTVEYA++ E+AG LL VHGRT +Q+G+NTGLASWEH
Sbjct: 133 STCTLGIKIPLFCKIRVFDSIEKTVEYAKIFEKAGASLLVVHGRTREQKGVNTGLASWEH 192
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AV+ AL IPV+ANGN+ D++ C TG GVM AE +L+NP++F GQ + +
Sbjct: 193 IRAVKAALNIPVVANGNMILHGDIQRCWEHTGCDGVMIAEPHLFNPSIFAGQRISSLSIF 252
Query: 384 SEYLDLVAQYPVRLQY--ARGHVFNMCHHLLT-LPENSDVRLLVGKTNHIKD----LRKA 436
+YL++V A+ H F + + LLT +P +R ++ K+ + D R
Sbjct: 253 CDYLNIVKSNTNLFVNGDAKSHCFKIFNTLLTKIPS---LRTVLDKSRSLDDYFEFCRLV 309
Query: 437 VDMLRERFI 445
DML++ I
Sbjct: 310 EDMLKQSKI 318
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 74 TQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK-KLRQEILMSTPE 132
+ P LAPMV E +R+L+R+YG+ +CYT MV+ F K I ST
Sbjct: 11 NSIKKPWKFLAPMVGNCEQAYRILARKYGADVCYTEMVNCKVFNRSKCNPVDNIWYSTSN 70
Query: 133 -DRPLIIQ 139
DRPL++Q
Sbjct: 71 IDRPLVVQ 78
>gi|241952224|ref|XP_002418834.1| tRNA-dihydrouridine synthase, putative [Candida dubliniensis CD36]
gi|223642173|emb|CAX44140.1| tRNA-dihydrouridine synthase, putative [Candida dubliniensis CD36]
Length = 463
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 138/371 (37%), Positives = 210/371 (56%), Gaps = 27/371 (7%)
Query: 135 PLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ 194
P + R ++ +G P+ I+APMVD SEL WR+LSRRYG+ LCYTPM A F +K R
Sbjct: 42 PKLTGRQLYNAMGQPKTIVAPMVDQSELAWRILSRRYGAQLCYTPMFHAKLFATQEKYRN 101
Query: 195 EILMSTPE-----DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 249
+ + + DRPL++QFC ND L +AAKL E CD ID+N+GCPQ +A++G YG
Sbjct: 102 SMWTTNLDGNQTLDRPLVVQFCANDPDYLLQAAKLIEDECDAIDLNLGCPQGIARKGKYG 161
Query: 250 AYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309
A+L DDW L+ L+ +L + +PV+ KIRIY D K+++YA+M+ AG Q + VHGRT
Sbjct: 162 AFLMDDWDLVYKLIKNLHDNLSIPVTAKIRIYDDYEKSLKYAKMVLDAGAQFITVHGRTR 221
Query: 310 DQRGMNTGLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367
+ +G TGLA+W+ + +R L + +NGN+ +D++ C ++T VM+AEGNLY
Sbjct: 222 EMKGQATGLANWKILKYLRDNLPQDQVFFSNGNVLYPSDLQRCQSETSCDAVMSAEGNLY 281
Query: 368 NPALF-------TGQTRPAWELASEYLDLVAQYPVRL---QYARGHVFNMCHHLLTLPEN 417
NP +F Q ++ EY ++V + L + H F + H L + +
Sbjct: 282 NPGVFWTLDDNKDKQFPRVDKILREYFEIVKENYDSLASRHAMKSHFFKLLHAFLEV--H 339
Query: 418 SDVRLLVGKTNHIKDLR-------KAVDMLRERFIDYHEGRKLWPPPNYPMSS-NHHNLS 469
++R ++GK + L K ++ E + + + KL + P+ H +
Sbjct: 340 KELRPIIGKASVNGPLDQWESIVVKIESLVEEIYSNNPDIEKLDVITDGPIEDWGGHYKT 399
Query: 470 LPPWICQPYVR 480
+P W CQPY R
Sbjct: 400 VPYWRCQPYFR 410
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
+ +G P+ I+APMVD SEL WR+LSRRYG+ LCYTPM A F +K R + + +
Sbjct: 50 YNAMGQPKTIVAPMVDQSELAWRILSRRYGAQLCYTPMFHAKLFATQEKYRNSMWTTNLD 109
Query: 133 -----DRPLIIQ 139
DRPL++Q
Sbjct: 110 GNQTLDRPLVVQ 121
>gi|448122297|ref|XP_004204415.1| Piso0_000262 [Millerozyma farinosa CBS 7064]
gi|358349954|emb|CCE73233.1| Piso0_000262 [Millerozyma farinosa CBS 7064]
Length = 423
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 141/371 (38%), Positives = 207/371 (55%), Gaps = 40/371 (10%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ----E 195
++++ +G P+ I+APMVD SEL WR+LSRRYG+ LCYTPM A F D+K RQ E
Sbjct: 9 KSLYTSIGDPKKIVAPMVDQSELAWRILSRRYGADLCYTPMFHARLFATDEKYRQNMWSE 68
Query: 196 ILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
+ DRPLI+QFC ND L +AA+L E CD +D+N+GCPQ +AK+G YGA+L DD
Sbjct: 69 LDGDKELDRPLIVQFCANDPDYLLKAAQLVEDKCDAVDLNLGCPQGIAKKGKYGAFLMDD 128
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
W L+ L+ +L ++ V+ KIRIY D K+++YARM+ AG Q + +HGRT + +G
Sbjct: 129 WTLIHKLIRTLHDNLKCAVTAKIRIYDDWEKSLQYARMVLDAGAQFITIHGRTREMKGQV 188
Query: 316 TGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
TGLA+W+ + +R+ L +NGNI D+E C + T GVM+AEGNLYNP F
Sbjct: 189 TGLANWKILKYLRENLPEDQVFFSNGNILYPEDIERCKSVTECDGVMSAEGNLYNPGTFW 248
Query: 374 GQTRPAW-------ELASEYLDLVAQYP--VRLQYARGHVFNMCHHLLTLPENSDVRLLV 424
++ ++ EY ++V P + H F + H L + ++R ++
Sbjct: 249 TESDDKEKQYPRVDKIIREYFEIVKTCPGSASRHAMKAHFFKLLHAFLEV--RRELRPVI 306
Query: 425 GKTN---HIKDLRKAV--------DMLRERFID----YHEGRKLWPPPNYPMSSNHHNLS 469
GKT+ + +D V D+ + ID G+ + +Y +
Sbjct: 307 GKTSVHANFEDWESIVVKVEDIVADIYKSENIDELDVIETGKLEYWGGSYK--------T 358
Query: 470 LPPWICQPYVR 480
+P W CQPY R
Sbjct: 359 IPYWRCQPYFR 369
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 48/71 (67%), Gaps = 4/71 (5%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ----EILM 128
+T +G P+ I+APMVD SEL WR+LSRRYG+ LCYTPM A F D+K RQ E+
Sbjct: 12 YTSIGDPKKIVAPMVDQSELAWRILSRRYGADLCYTPMFHARLFATDEKYRQNMWSELDG 71
Query: 129 STPEDRPLIIQ 139
DRPLI+Q
Sbjct: 72 DKELDRPLIVQ 82
>gi|145545963|ref|XP_001458665.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426486|emb|CAK91268.1| unnamed protein product [Paramecium tetraurelia]
Length = 358
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 118/286 (41%), Positives = 176/286 (61%)
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP 201
+ LGSP+FI APMVD SEL +R+ +R+YG+ L YTPM+ + K + E + P
Sbjct: 11 FYRNLGSPKFICAPMVDQSELAFRMQTRKYGTTLAYTPMLHSRIMTESKSYKDEFFTTCP 70
Query: 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTN 261
EDRPL Q CG+D + + +AA + + CD ID+N GCPQ +A++G YGA+L + +
Sbjct: 71 EDRPLFAQLCGHDPQVIIKAALMIQDQCDAIDLNFGCPQGIARKGLYGAFLLEKREQVLT 130
Query: 262 LVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+V L+Q ++VPV+CKIR+++D +T++ + ++ AGC +L VHGRT +Q G W
Sbjct: 131 IVKELKQNIKVPVTCKIRVFKDRKRTLDLTKDIQSAGCSILTVHGRTKEQNKDFVGQCDW 190
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWE 381
I +++ L IPV ANG I +DVE CL +T V VM++E L NPALF+G+ + E
Sbjct: 191 NIIAEIKQLLQIPVFANGGIYTWSDVERCLQETKVDAVMSSEALLENPALFSGEIKDLNE 250
Query: 382 LASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT 427
LA EY+ L QY RL + H+F + + L + + +L KT
Sbjct: 251 LALEYMQLAKQYDARLVEIKAHLFKLLYTGLQIHTDQRSKLAAAKT 296
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
+ LGSP+FI APMVD SEL +R+ +R+YG+ L YTPM+ + K + E + PE
Sbjct: 12 YRNLGSPKFICAPMVDQSELAFRMQTRKYGTTLAYTPMLHSRIMTESKSYKDEFFTTCPE 71
Query: 133 DRPLIIQ 139
DRPL Q
Sbjct: 72 DRPLFAQ 78
>gi|320583070|gb|EFW97286.1| tRNA-dihydrouridine synthase 1 [Ogataea parapolymorpha DL-1]
Length = 402
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 128/362 (35%), Positives = 208/362 (57%), Gaps = 23/362 (6%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL-- 197
R ++ +LG P+ ++APMVD SEL WR++SR+YG+ LCY+PM+ + F D K R+++
Sbjct: 9 RQLYDKLGRPKKVVAPMVDGSELAWRMISRKYGADLCYSPMLHSRLFATDDKYREKMFGP 68
Query: 198 MSTPE-DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
M E DRPLI+QFC ND L +AAK E CD +D+N+GCPQ +A++GHYG++L +DW
Sbjct: 69 MDGSEVDRPLIVQFCANDPDYLLQAAKHVEDRCDAVDLNLGCPQGIARKGHYGSFLMEDW 128
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
L++ L+++L + +++PV+ KIR+Y D K++ YA+M AG Q L VHGRT + +G T
Sbjct: 129 DLISKLINTLHRNLKIPVTAKIRVYDDWEKSLAYAKMCLDAGAQFLTVHGRTREMKGQKT 188
Query: 317 GLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG 374
G A+W+ + ++ L ++NGNI D++ C+ + G VM+AEGNLYNP +F
Sbjct: 189 GFANWKLVKYIKDNLPPETVFLSNGNILYPEDIDRCIKEVGCDAVMSAEGNLYNPGIFWT 248
Query: 375 QTRPAWE-------LASEYLDLVAQ--YPVRLQYARGHVFNMCHHLLTLPENSDVRLLVG 425
+T + EY ++VAQ + + H+F + L++ ++DVR +
Sbjct: 249 ETEDIEKQFPRIDRFVREYFEVVAQCEGSESRRCFKSHLFKSLRNFLSI--HTDVRAEIA 306
Query: 426 KTNH---IKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSS----NHHNLSLPPWICQPY 478
K + +++ V M+ + ++ + + +P W QPY
Sbjct: 307 KLSRNSPLEEFEAVVKMIEDVVAKIYQQENIAELDQVRVGEIENWGGRYRDVPYWRLQPY 366
Query: 479 VR 480
R
Sbjct: 367 FR 368
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL--MST 130
+ +LG P+ ++APMVD SEL WR++SR+YG+ LCY+PM+ + F D K R+++ M
Sbjct: 12 YDKLGRPKKVVAPMVDGSELAWRMISRKYGADLCYSPMLHSRLFATDDKYREKMFGPMDG 71
Query: 131 PE-DRPLIIQ 139
E DRPLI+Q
Sbjct: 72 SEVDRPLIVQ 81
>gi|50303583|ref|XP_451733.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640865|emb|CAH02126.1| KLLA0B04499p [Kluyveromyces lactis]
Length = 425
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 143/374 (38%), Positives = 210/374 (56%), Gaps = 41/374 (10%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ----E 195
R +F ++G P I+APMVD SEL WR+LSR+YG+ L YTPM A F +K R+ E
Sbjct: 9 RQLFEKIGKPSKIVAPMVDQSELAWRILSRKYGATLAYTPMFHAKLFATSEKYRKDMWCE 68
Query: 196 ILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
+ DRPL++QFC ND + L +AAKL + CD +D+NIGCPQ +A++G YGA+L +D
Sbjct: 69 LDGDEKIDRPLVVQFCANDPEYLLQAAKLVQNKCDAVDLNIGCPQGIARKGKYGAFLMED 128
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
W L++ L+S+L + + VPV+ KIR++ + KT+EYA+M+ ++G Q L VHGR +Q+G
Sbjct: 129 WDLISRLISTLHEHLDVPVTAKIRVFPEREKTLEYAKMILKSGAQFLTVHGRLREQKGQQ 188
Query: 316 TGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF- 372
TGLA WE I +R L ANGNI D+ C+ + GVM+AEGNLYNP +F
Sbjct: 189 TGLADWEIIKYLRDNLPQDTVFFANGNILYPEDISRCMNKIHCDGVMSAEGNLYNPGIFN 248
Query: 373 ---TGQTRPAW----ELASEYLDLV----AQYPVRLQYARGHVFNMCHHLLTLPENSDVR 421
T + + +L EY ++V + ++ + H F + LP N+D+R
Sbjct: 249 TEHTNEKDKIFPRVDKLLREYFEIVKSCEGSHASKIA-MKSHFFKILRPF--LPLNTDIR 305
Query: 422 LLVGK---TNHIKDL-RKAVDMLRERFIDYHEGRKLWPPPNY----PMSSNHHNL----- 468
+ T D K V ++ ER + ++ PN ++ L
Sbjct: 306 SNIATMKATTSFNDWEEKVVKLVEERV------QAIFNEPNIYEKDVITVGETQLWGGAY 359
Query: 469 -SLPPWICQPYVRP 481
++P W CQPY RP
Sbjct: 360 RTVPYWRCQPYFRP 373
Score = 68.6 bits (166), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ----EILM 128
+ ++G P I+APMVD SEL WR+LSR+YG+ L YTPM A F +K R+ E+
Sbjct: 12 FEKIGKPSKIVAPMVDQSELAWRILSRKYGATLAYTPMFHAKLFATSEKYRKDMWCELDG 71
Query: 129 STPEDRPLIIQ 139
DRPL++Q
Sbjct: 72 DEKIDRPLVVQ 82
>gi|281207360|gb|EFA81543.1| tRNA-dihydrouridine synthase 1-like protein [Polysphondylium
pallidum PN500]
Length = 430
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/302 (41%), Positives = 189/302 (62%), Gaps = 14/302 (4%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L SP+ ++APM+D + L +R+L R+YG+ L YTPM + + + R E EDRP
Sbjct: 71 LKSPKHVVAPMIDHTFLAFRMLCRKYGADLVYTPMFHSKNYATNATYRLENFEIAKEDRP 130
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
L++QFCGN+ + +AAK+ E CD +D+N+GCPQ +A+RG+YGA+L + ++ +V +
Sbjct: 131 LVVQFCGNEVDYIVQAAKMVESQCDAVDLNLGCPQGIARRGNYGAFLLEKPDVILPMVRA 190
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + + VP+ CKIR+ +++ T++ A L+ AGCQLL VHGRT +Q+G A+W+ I
Sbjct: 191 LHKELSVPIFCKIRLLPNLDDTIKLALQLQEAGCQLLTVHGRTKEQKGHTQPHANWKAIR 250
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR-PAWELAS 384
A+++AL IPVIANG++ D+E CL +TG GVM+A+G L NPA+F G R + L
Sbjct: 251 AIKEALVIPVIANGSVGEWGDIEECLKETGADGVMSADGILNNPAMFNGAERIGSTTLCR 310
Query: 385 EYLDLVAQYPVRLQYARGHVFNM----CHHLLTLPENSDVRLLVGKTNHIKDLRKAVDML 440
EYL++V +YP Q R H + M C H D+R K H+ ++ + D+L
Sbjct: 311 EYLEMVKKYPTPYQIVRSHFYKMLKKECEHY------EDLR---DKLAHLYEMPQFYDIL 361
Query: 441 RE 442
E
Sbjct: 362 EE 363
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
L SP+ ++APM+D + L +R+L R+YG+ L YTPM + + + R E EDRP
Sbjct: 71 LKSPKHVVAPMIDHTFLAFRMLCRKYGADLVYTPMFHSKNYATNATYRLENFEIAKEDRP 130
Query: 136 LIIQ 139
L++Q
Sbjct: 131 LVVQ 134
>gi|363747962|ref|XP_003644199.1| hypothetical protein Ecym_1130 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887831|gb|AET37382.1| hypothetical protein Ecym_1130 [Eremothecium cymbalariae
DBVPG#7215]
Length = 433
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 131/306 (42%), Positives = 186/306 (60%), Gaps = 19/306 (6%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL-- 197
R +F +LG P I+APMVD SE WR+LSRRYG+ L YTPM A F +K R+++
Sbjct: 17 RALFEKLGKPTRIVAPMVDQSEFAWRVLSRRYGATLVYTPMFHAKLFATSEKYRKDMWCH 76
Query: 198 MSTPE--DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
+ E DRPLI+QFC ND + L EAAKL + CD +D+N+GCPQ +AK+GHYGAYL D+
Sbjct: 77 LDGDEKLDRPLIVQFCANDPEYLLEAAKLVQDKCDAVDLNLGCPQGIAKKGHYGAYLMDE 136
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
W L++ L+++L + + +PV+ KIR++ D KT++YA M+ AG Q+L VHGR +Q+G
Sbjct: 137 WNLISKLINNLHENLDIPVTAKIRVFPDREKTLKYANMILDAGAQILTVHGRLREQKGQK 196
Query: 316 TGLASWEHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
TGLA WE I +R + ANGNI D+ C+ + G VM+AEGNLYNP +F
Sbjct: 197 TGLADWEIIKYLRNNSPKDQVIFANGNILYPEDIGRCINEIGCDAVMSAEGNLYNPGVFN 256
Query: 374 G-------QTRPAWE-LASEYLDLVAQYP---VRLQYARGHVFNMCHHLLTLPENSDVRL 422
+T P + + EY ++V QY + H F + LP ++D+R
Sbjct: 257 TDFISDKEKTFPRVDKVLREYFEIVKQYQDSHASKSAMKNHFFKILRPF--LPHHTDIRS 314
Query: 423 LVGKTN 428
+ + N
Sbjct: 315 NLAQMN 320
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL--MST 130
+ +LG P I+APMVD SE WR+LSRRYG+ L YTPM A F +K R+++ +
Sbjct: 20 FEKLGKPTRIVAPMVDQSEFAWRVLSRRYGATLVYTPMFHAKLFATSEKYRKDMWCHLDG 79
Query: 131 PE--DRPLIIQ 139
E DRPLI+Q
Sbjct: 80 DEKLDRPLIVQ 90
>gi|323347278|gb|EGA81552.1| Dus1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 301
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 117/239 (48%), Positives = 161/239 (67%), Gaps = 5/239 (2%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE---I 196
R +F ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++
Sbjct: 20 RQLFDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSS 79
Query: 197 LMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
L + DRPL++QFC ND + L AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W
Sbjct: 80 LDGSSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEW 139
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
L+ NL+++L + ++VPV+ KIRI+ D K++ YA+M+ AG Q L VHGR +Q+G T
Sbjct: 140 DLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQKT 199
Query: 317 GLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
GLA+WE I +R L + ANGNI D+ C+ G VM+AEGNLYNP +F
Sbjct: 200 GLANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFN 258
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE---ILMS 129
+ ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++ L
Sbjct: 23 FDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLDG 82
Query: 130 TPEDRPLIIQ 139
+ DRPL++Q
Sbjct: 83 SSVDRPLVVQ 92
>gi|406698303|gb|EKD01541.1| tRNA dihydrouridine synthase [Trichosporon asahii var. asahii CBS
8904]
Length = 648
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 168/486 (34%), Positives = 235/486 (48%), Gaps = 116/486 (23%)
Query: 64 HSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLR 123
H + D + +GSP++++APMVD SEL WRLLS+ +P+
Sbjct: 55 HKKLSGYDFYRAIGSPKYVVAPMVDQSELAWRLLSK--------SPL------------- 93
Query: 124 QEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY-----GSHLCYT 178
P D G P +I AP+ D P + R+Y G+HL YT
Sbjct: 94 -------PPD-----------VAGPPEWIEAPLPDGPAGPSQ--PRKYARYAGGAHLTYT 133
Query: 179 PMVSAHQFIADKK-----------------LRQEILMSTPEDRPLII------------- 208
PM+ A F ++ R+ + DRPL +
Sbjct: 134 PMIHARVFSESRQNSRGGDPQFNITCNEEGNRKTLAGIEGGDRPLFVQVSHQLAGSKFPL 193
Query: 209 ------------QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
QFC ND L AAK + CD +DIN GCPQ +AKRG YG++L +DW
Sbjct: 194 TLDGWMSVILTLQFCANDPDVLLSAAKKVQNRCDAVDINFGCPQGIAKRGKYGSFLMEDW 253
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
L+ L+S+L + VPV+ K RI+ +V KTV YA+M+E AG Q+L HGR +Q+G T
Sbjct: 254 DLIARLISTLHVNLTVPVTAKFRIFPEVEKTVRYAQMMEAAGAQILTCHGRLREQKGPAT 313
Query: 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT 376
GLA W+ I AV++A+++PV ANGNI D C+ TG GVM+AEGNL NPALF
Sbjct: 314 GLADWDQIKAVKEAVSVPVFANGNILYADDALRCMEYTGCDGVMSAEGNLNNPALFADPK 373
Query: 377 RP-----AWELASEYLDLVAQY--PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGK--- 426
P A LA YLD+VA+ P + H+F++ +L E+ D+R++ GK
Sbjct: 374 SPNAYVAATALARRYLDIVAKLDTPTAGSAIKAHLFHLLKPMLD--EHEDLRVIFGKQGV 431
Query: 427 TNHIKDLRKAVDMLRERFIDYHEGRKLWPP-----PNYPMSSNHHNLSLPPWICQPYVRP 481
+ + R A+D + +RF PP P P+ N + LP +I QPY+R
Sbjct: 432 DDKVAYYRAALDEVEKRF----------PPEPVTMPATPLEENGYR-KLPRYIAQPYIRA 480
Query: 482 TPEQQE 487
P E
Sbjct: 481 QPISSE 486
>gi|410077060|ref|XP_003956112.1| hypothetical protein KAFR_0B06800 [Kazachstania africana CBS 2517]
gi|372462695|emb|CCF56977.1| hypothetical protein KAFR_0B06800 [Kazachstania africana CBS 2517]
Length = 427
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 143/376 (38%), Positives = 203/376 (53%), Gaps = 45/376 (11%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ----E 195
R +F R+G P ILAPMVD SEL WR+LSRRYG+ LCYTPM A F +K R+ E
Sbjct: 18 RELFERIGCPSRILAPMVDQSELAWRILSRRYGATLCYTPMFHAKLFATSEKYRRDMWCE 77
Query: 196 ILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
+ ++ DRPLI+QFC ND + L AAKL + CD +D+N+GCPQ +AK+GHYG++L ++
Sbjct: 78 LDGNSDIDRPLIVQFCANDPEYLLAAAKLVQDKCDAVDLNLGCPQGIAKKGHYGSFLMEE 137
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
W L+ L+ +L + VPV+ KIR++ + KT+EYA+M+ AG Q L VHGR +Q+G
Sbjct: 138 WDLIHKLIRTLHDNLDVPVTAKIRVFPEREKTLEYAKMVLDAGAQFLTVHGRLREQKGQK 197
Query: 316 TGLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
TGLA+W I +R L + ANGNI D+ C+ VM+AEGNLYNP LF
Sbjct: 198 TGLANWNIIKYLRDNLPSETVFFANGNILYPEDISRCMGTIECDAVMSAEGNLYNPGLFN 257
Query: 374 -------GQTRPAWE-LASEYLDLVA---QYPVRLQYARGHVFNMCHHLLTLPENSDVRL 422
+T P + + EY ++V + + H F + L ++D+R
Sbjct: 258 VDHVEEKDKTFPRVDKIVREYFEIVKECRESNASRSAMKSHFFKILRPFLA--NHTDIRS 315
Query: 423 LVGKTNHIKDLRK-----------------AVDMLRERFIDYHEGRKLWPPPNYPMSSNH 465
+ + L + A D + E+ + G++LW
Sbjct: 316 ELASMSAKSSLEEWEEKIVVPVEKTVATIFAQDDIEEKDVITVGGQELWGGAYK------ 369
Query: 466 HNLSLPPWICQPYVRP 481
S+P W CQPY RP
Sbjct: 370 ---SIPYWRCQPYFRP 382
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 65 SSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ 124
T + + ++G P ILAPMVD SEL WR+LSRRYG+ LCYTPM A F +K R+
Sbjct: 13 GKTTGRELFERIGCPSRILAPMVDQSELAWRILSRRYGATLCYTPMFHAKLFATSEKYRR 72
Query: 125 ----EILMSTPEDRPLIIQ 139
E+ ++ DRPLI+Q
Sbjct: 73 DMWCELDGNSDIDRPLIVQ 91
>gi|365986096|ref|XP_003669880.1| hypothetical protein NDAI_0D03230 [Naumovozyma dairenensis CBS 421]
gi|343768649|emb|CCD24637.1| hypothetical protein NDAI_0D03230 [Naumovozyma dairenensis CBS 421]
Length = 429
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 140/378 (37%), Positives = 206/378 (54%), Gaps = 43/378 (11%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM- 198
R +F ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F +K R+++
Sbjct: 7 RQLFEKIGCPTKIVAPMVDQSELAWRILSRRYGATLTYTPMLHAKLFATSEKYRKDMWSE 66
Query: 199 ---STPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
DRPL++QFC ND + L +AAKL E CD +D+N+GCPQ +A++GHYG++L ++
Sbjct: 67 YDGDADLDRPLVVQFCANDPEYLLKAAKLIENKCDAVDLNLGCPQGIARKGHYGSFLMEE 126
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
W L+ L+ +L + VPV+ KIR++ + KT+EYA+M+ AG Q L VHGR +Q+G
Sbjct: 127 WDLIHKLIKTLHDNLNVPVTAKIRVFPEREKTLEYAKMVLDAGAQFLTVHGRLREQKGQK 186
Query: 316 TGLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
TGLA WE I +R L + ANGN+ D+ CL GVM+AEGNLYNP +F
Sbjct: 187 TGLADWEIIKYLRDNLPSDTVFFANGNVLYPEDISRCLTYMHCDGVMSAEGNLYNPGIFV 246
Query: 374 G--------QTRPAW----ELASEYLDLVAQYPVRLQYARGHVFNMCHHLLT-----LPE 416
+ + A+ ++ EY ++V +Y Q ++ M H LP
Sbjct: 247 NIPNDATCEELKKAFPRVDKITREYFEIVKKY----QGSQASRIAMKSHFFKILRPFLPN 302
Query: 417 NSDVRLLVGKTNHIKDLRKAVDMLRERFIDYHEG--RKLWPPPNYPMSSNHHN------- 467
+ D+R + K N + + D+ E + E +K++ + N
Sbjct: 303 HVDIRTELAKLN----AKSSFDVWEENVVKPVEDIVKKIFNEADIDEKDKIINGEMELWG 358
Query: 468 ---LSLPPWICQPYVRPT 482
+P W CQPY RP
Sbjct: 359 GCYKKIPYWRCQPYFRPV 376
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM---- 128
+ ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F +K R+++
Sbjct: 10 FEKIGCPTKIVAPMVDQSELAWRILSRRYGATLTYTPMLHAKLFATSEKYRKDMWSEYDG 69
Query: 129 STPEDRPLIIQ 139
DRPL++Q
Sbjct: 70 DADLDRPLVVQ 80
>gi|302308179|ref|NP_985016.2| AER158Cp [Ashbya gossypii ATCC 10895]
gi|299789331|gb|AAS52840.2| AER158Cp [Ashbya gossypii ATCC 10895]
gi|374108239|gb|AEY97146.1| FAER158Cp [Ashbya gossypii FDAG1]
Length = 434
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 138/366 (37%), Positives = 204/366 (55%), Gaps = 26/366 (7%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 199
R +F R+G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F +K R+++
Sbjct: 18 RALFERIGKPTKIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSEKYRRDMWSD 77
Query: 200 TPED----RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
D RPL++QFC ND + L +AA+L E CD +D+N+GCPQ +AK+GHYG++L ++
Sbjct: 78 LDGDESIDRPLVVQFCANDPEYLLKAAQLVENKCDAVDLNLGCPQGIAKKGHYGSFLMEE 137
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
W L+ NL+++L + VPV+ KIRI+ D KT+ YA+M+ AG Q L VHGR +Q+G
Sbjct: 138 WDLVANLINTLHTKLAVPVTAKIRIFPDREKTLAYAKMVLDAGAQFLTVHGRLREQKGQQ 197
Query: 316 TGLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
TGLA W I +R L + ANGNI D+ C+ + G VM+AEGNLYNP +F
Sbjct: 198 TGLADWATIKYLRDNLPSDTVFFANGNILYPEDIPRCMTELGCDAVMSAEGNLYNPGVFN 257
Query: 374 ----GQTRPAW----ELASEYLDLVAQYPVRL---QYARGHVFNMCHHLLTLPENSDVRL 422
G + ++ EY ++V Q+ + + H F + LP + D+R
Sbjct: 258 IEHIGDKEKTFPRVDKVLREYFEIVKQHNCSVASRTAMKNHFFKILRPF--LPNHVDIRS 315
Query: 423 LVGK---TNHIKDLRKAVDMLRERFIDYHE----GRKLWPPPNYPMSSNHHNLSLPPWIC 475
+ + + ++ V + + +D K + P + ++P W C
Sbjct: 316 QLAQLSPKHPFEEWENVVAAVEQAVLDIFAQPDIATKDVITTHAPQAWGGAYKTVPYWRC 375
Query: 476 QPYVRP 481
QPY RP
Sbjct: 376 QPYFRP 381
Score = 68.9 bits (167), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 59 VPKDCHSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIA 118
V K S A + ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F
Sbjct: 7 VGKAQSSKLAGRALFERIGKPTKIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFAT 66
Query: 119 DKKLRQEILMSTPE----DRPLIIQ 139
+K R+++ DRPL++Q
Sbjct: 67 SEKYRRDMWSDLDGDESIDRPLVVQ 91
>gi|126135962|ref|XP_001384505.1| hypothetical protein PICST_58121 [Scheffersomyces stipitis CBS
6054]
gi|126091703|gb|ABN66476.1| tRNA dihydrouridine synthase [Scheffersomyces stipitis CBS 6054]
Length = 415
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 141/372 (37%), Positives = 210/372 (56%), Gaps = 28/372 (7%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ----E 195
R ++ +G P+ I+ PMVD SEL WR+LSRRYG+ LCYTPM A F ++K R E
Sbjct: 10 RELYDSMGQPKRIVGPMVDQSELAWRILSRRYGADLCYTPMFHAKLFATEQKYRDNMWSE 69
Query: 196 ILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
+ +DRPLI+QFC ND L +AAK E CD +D+N+GCPQ +AK+G YGA+L DD
Sbjct: 70 LDGDFEKDRPLIVQFCANDPDYLLQAAKFVEDKCDAVDLNLGCPQGIAKKGKYGAFLMDD 129
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
W L+ L+ +L ++VPV+ KIRIY D K+++YA+M+ AG Q + VHGRT D +G
Sbjct: 130 WDLVHTLIKNLHDNLKVPVTAKIRIYDDWEKSLQYAKMILDAGAQFITVHGRTRDMKGQA 189
Query: 316 TGLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF- 372
TGLA+W+ + +R+ L + ANGNI +D+ C +T VM+AEGNLYNP +F
Sbjct: 190 TGLANWKVLRYLRENLPKDQVFFANGNILYPSDLGRCENETQCDAVMSAEGNLYNPGVFW 249
Query: 373 ------TGQTRPAWELASEYLDLVAQYP--VRLQYARGHVFNMCHHLLTLPENSDVRLLV 424
Q ++ EY ++V P + H F + H L + ++R ++
Sbjct: 250 TNSADKDRQFSRVDKMLREYFEIVKICPGSASRHAMKAHFFKLLHAFLNT--HKELRPII 307
Query: 425 GKTNH---IKDLRKAV----DMLRERFI--DYHEGRKLWPPPNYPMSSNHHNLSLPPWIC 475
G+T+ ++D V +++ E F D +E K+ ++ +P W C
Sbjct: 308 GRTSVHACLEDWEAIVVRVEEIVTEIFSRPDINEIDKITTGQIQHWGGSYK--EVPYWRC 365
Query: 476 QPYVRPTPEQQE 487
QPY R +++
Sbjct: 366 QPYFRTVDGEKQ 377
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ----EILM 128
+ +G P+ I+ PMVD SEL WR+LSRRYG+ LCYTPM A F ++K R E+
Sbjct: 13 YDSMGQPKRIVGPMVDQSELAWRILSRRYGADLCYTPMFHAKLFATEQKYRDNMWSELDG 72
Query: 129 STPEDRPLIIQ 139
+DRPLI+Q
Sbjct: 73 DFEKDRPLIVQ 83
>gi|254579200|ref|XP_002495586.1| ZYRO0B14872p [Zygosaccharomyces rouxii]
gi|238938476|emb|CAR26653.1| ZYRO0B14872p [Zygosaccharomyces rouxii]
Length = 406
Score = 251 bits (641), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 139/386 (36%), Positives = 206/386 (53%), Gaps = 49/386 (12%)
Query: 133 DRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKL 192
D + R +F ++G P I+APMVD SEL WR+LSR+YG+ L YTPM A F K
Sbjct: 3 DSKKLKGRELFEKMGKPTKIVAPMVDQSELAWRILSRKYGATLAYTPMFHAKLFATSPKY 62
Query: 193 RQ----EILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHY 248
R+ E+ + DRPL++QFC ND + L +AA+L + CD +D+N+GCPQ +AK+GHY
Sbjct: 63 RKDMWCEMDGDSKIDRPLVVQFCANDPEYLLQAARLVQDKCDAVDLNLGCPQGIAKKGHY 122
Query: 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308
G++L ++W L+ L+ +L + + VPV+ KIRI+ + K+++YAR + AG Q L VHGR
Sbjct: 123 GSFLMEEWDLVHKLIRNLHENLDVPVTAKIRIFPEKEKSLQYARTVLDAGAQFLTVHGRL 182
Query: 309 VDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366
+Q+G +GLA WE I +R L +NGN+ D+ C+ Q VM+AEGNL
Sbjct: 183 REQKGQQSGLADWETIKYLRDNLPPDTVFFSNGNLLYPNDISRCMDQINCDAVMSAEGNL 242
Query: 367 YNPALFTGQTRPAWE--------LASEYLDLVAQYPVRLQYARGHVFNMCHHLLT----- 413
YNP +F + E + EY ++V Y +++ M HL
Sbjct: 243 YNPGIFNAEDSQDKEKVFPRVDVICREYFEIVKSY----EFSHASRTAMKSHLFKILRPF 298
Query: 414 LPENSDVR---LLVGKTNHIKDLRKAV---------DMLRERFIDYHEGR-----KLWPP 456
LP ++D+R L+ + + D AV + E+ ID + +LW
Sbjct: 299 LPNHTDIRSSLALLNAKSSLDDYENAVVIPVENVVKSIFEEKDIDEKDKVVKGDIELWGG 358
Query: 457 PNYPMSSNHHNLSLPPWICQPYVRPT 482
Y ++P W CQPY RP
Sbjct: 359 SYY---------TVPYWRCQPYFRPV 375
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ----EILM 128
+ ++G P I+APMVD SEL WR+LSR+YG+ L YTPM A F K R+ E+
Sbjct: 13 FEKMGKPTKIVAPMVDQSELAWRILSRKYGATLAYTPMFHAKLFATSPKYRKDMWCEMDG 72
Query: 129 STPEDRPLIIQ 139
+ DRPL++Q
Sbjct: 73 DSKIDRPLVVQ 83
>gi|301100330|ref|XP_002899255.1| tRNA-dihydrouridine synthase, putative [Phytophthora infestans
T30-4]
gi|262104172|gb|EEY62224.1| tRNA-dihydrouridine synthase, putative [Phytophthora infestans
T30-4]
Length = 377
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 187/310 (60%), Gaps = 9/310 (2%)
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP 201
+ +GSP+ I+APMVD SEL +R+L R+ G+ CYTPM+ + F + R+++
Sbjct: 17 FYRAIGSPKRIVAPMVDQSELAFRMLCRKLGADCCYTPMLHSRLFAESAEYREKMFEHHI 76
Query: 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTN 261
+DRPL++QFCGND K + AAK+ E HCD +D+N+GCPQ +A++GHYG++L D +
Sbjct: 77 QDRPLVVQFCGNDPKTVLAAAKMVEGHCDAVDLNLGCPQGIARKGHYGSFLMHDKETVKA 136
Query: 262 LVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
V +L + +PV+ KIR++ D N+T+E+A ML+ AGC LL VHGRT + +W
Sbjct: 137 TVKTLSAGLNIPVTVKIRVFPDDNETLEFADMLQEAGCDLLTVHGRTKEMNKTAVREVNW 196
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT------GQ 375
+ I +++ LTIPVIANG I+ D+ CL TG GVM++EG L NPALF G+
Sbjct: 197 DIIRRIKERLTIPVIANGGIETHEDIARCLEATGCDGVMSSEGLLENPALFADTNNTPGE 256
Query: 376 TRPAWELASEYLDLVAQY-PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLR 434
ELA +YL+ Y P + R H+F + L + +SD+R + +++
Sbjct: 257 DTSFLELARQYLECATLYPPASDKIVRAHLFKILFQDLRV--HSDLRDALAAAKSQQEMV 314
Query: 435 KAVDMLRERF 444
+ VD L R
Sbjct: 315 EIVDELAVRL 324
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 47/246 (19%)
Query: 71 DAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
D + +GSP+ I+APMVD SEL +R+L R+ G+ CYTPM+ + F + R+++
Sbjct: 16 DFYRAIGSPKRIVAPMVDQSELAFRMLCRKLGADCCYTPMLHSRLFAESAEYREKMFEHH 75
Query: 131 PEDRPLIIQRTIFPRLGSPRFIL--APMV----DASELPW---RLLSRR--YGSHLCYTP 179
+DRPL++Q P+ +L A MV DA +L + ++R+ YGS L +
Sbjct: 76 IQDRPLVVQFCG----NDPKTVLAAAKMVEGHCDAVDLNLGCPQGIARKGHYGSFLMH-- 129
Query: 180 MVSAHQFIADKKLRQEIL--MSTPEDRPLI--IQFCGNDSKNLTEAAKLAEPHCDGIDIN 235
DK+ + + +S + P+ I+ +D++ L A L E CD + ++
Sbjct: 130 ---------DKETVKATVKTLSAGLNIPVTVKIRVFPDDNETLEFADMLQEAGCDLLTVH 180
Query: 236 IGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPV--SCKIRIYQDVNKTVEYARM 293
+M + A + +W +++ +++ + +PV + I ++D+ AR
Sbjct: 181 GRTKEM-----NKTAVREVNW----DIIRRIKERLTIPVIANGGIETHEDI------ARC 225
Query: 294 LERAGC 299
LE GC
Sbjct: 226 LEATGC 231
>gi|242210427|ref|XP_002471056.1| predicted protein [Postia placenta Mad-698-R]
gi|220729846|gb|EED83713.1| predicted protein [Postia placenta Mad-698-R]
Length = 513
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 151/411 (36%), Positives = 212/411 (51%), Gaps = 98/411 (23%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSA-----------------HQFIA 188
LGSP++++APMVD SEL L YTPM++A +Q A
Sbjct: 21 LGSPKYVVAPMVDQSEL------------LVYTPMINAKACMRYAGPHNILLSHHYQMFA 68
Query: 189 D---KKLRQEILMST------PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCP 239
+ K R + T PEDRPLI+QFC N + L ++AK+ EP+CD +D+N+GCP
Sbjct: 69 EGARKGYRDQNFNITLGEEGGPEDRPLIVQFCANSPEQLLKSAKVVEPYCDAVDVNLGCP 128
Query: 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC 299
Q +A+RGHYG++LQD+W L+ L+++L + + +PV+ K R++ V KTVEYA+MLERAG
Sbjct: 129 QDIARRGHYGSFLQDEWDLIYELINTLHRNLSIPVTAKFRVFPTVEKTVEYAKMLERAGA 188
Query: 300 QLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359
Q+L HGR +QRG NTGLA WE I AV++A++IPV ANGN+ +D+E CLA TG +
Sbjct: 189 QILTCHGRLREQRGHNTGLADWEKIRAVKEAVSIPVFANGNVLFHSDIERCLAATGADAI 248
Query: 360 MTAEGNLYNPALF----------------------------TGQTRPAWELASEYLDLV- 390
M+AEGNLYNPA+F TG LA EYL +V
Sbjct: 249 MSAEGNLYNPAIFSLAPSLADASTSTSTSTSASASSSAPYLTGLHPRHTHLALEYLAIVQ 308
Query: 391 -AQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKD------LRKAVDMLRER 443
+ P +GH+F + L D+R +G+ K + D++RE
Sbjct: 309 AQRTPTSPSAVKGHLFKLLRPALA--RAPDLRERLGRVRAEKGEPPRAAFARYADVVREL 366
Query: 444 FIDYHEGRKLWPPPNYPMSSNHHNLS-------------LPPWICQPYVRP 481
E + ++ L LP W+ QPY RP
Sbjct: 367 DARLQEDVR---------AAGERGLEELVVWDAAAALPLLPHWLAQPYFRP 408
>gi|367005783|ref|XP_003687623.1| hypothetical protein TPHA_0K00550 [Tetrapisispora phaffii CBS 4417]
gi|357525928|emb|CCE65189.1| hypothetical protein TPHA_0K00550 [Tetrapisispora phaffii CBS 4417]
Length = 424
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 137/372 (36%), Positives = 210/372 (56%), Gaps = 37/372 (9%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ----E 195
R +F ++G P I+APMVD SEL WR+LSR+YG+ LCYTPM A F +K R+ E
Sbjct: 15 RELFEKIGKPTKIVAPMVDQSELAWRVLSRQYGATLCYTPMFHAKLFATSEKYRKDMWCE 74
Query: 196 ILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
+ + DRPL++QFC ND + L AAKL + CD +D+N+GCPQ +A++GHYG++L ++
Sbjct: 75 LDGDSDLDRPLVVQFCANDPEYLLAAAKLVQDKCDAVDLNLGCPQGIARKGHYGSFLMEE 134
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
W L+ L+ +L + VPV+ KIR++ + KT+EYA+M+ AG Q L VHGR +Q+G
Sbjct: 135 WDLIRKLIRTLHDNLTVPVTAKIRVFPEREKTLEYAKMVLDAGAQFLTVHGRLREQKGQK 194
Query: 316 TGLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
TGLA W+ I +R+ L + ANGNI D+ C+ VM+AEGNLYNP +F
Sbjct: 195 TGLADWDIIKYLRENLPTDTVFFANGNILYPEDISRCMEHINADAVMSAEGNLYNPGVFN 254
Query: 374 -------GQTRPAWE-LASEYLDLVAQ----YPVRLQYARGHVFNMCHHLLTLPENSDVR 421
+T P + +A EY +++ + + R+ + H+F + L ++D+R
Sbjct: 255 TDYIDDKDKTFPKVDKIAREYFEVIKKCNGSHASRIA-MKSHMFKILRPFLH--HHTDIR 311
Query: 422 LLVGKTNHIKDLRKAVDMLRERFIDYHEG--RKLWPPPNY----PMSSNHHNL------S 469
+ N + +D E+ I E +++ P+ + + L +
Sbjct: 312 SQIASMN----AKSTLDDWEEKVIKPVEKVVTEIYADPSIQEKDTIVTGSQELWGGAYKT 367
Query: 470 LPPWICQPYVRP 481
+P W CQPY RP
Sbjct: 368 IPYWRCQPYFRP 379
Score = 71.6 bits (174), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ----EILM 128
+ ++G P I+APMVD SEL WR+LSR+YG+ LCYTPM A F +K R+ E+
Sbjct: 18 FEKIGKPTKIVAPMVDQSELAWRVLSRQYGATLCYTPMFHAKLFATSEKYRKDMWCELDG 77
Query: 129 STPEDRPLIIQ 139
+ DRPL++Q
Sbjct: 78 DSDLDRPLVVQ 88
>gi|18043390|gb|AAH19480.1| Dus1l protein [Mus musculus]
Length = 365
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 128/252 (50%), Positives = 165/252 (65%), Gaps = 23/252 (9%)
Query: 241 MVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQ 300
M+AKRGHYGA+LQ++W LL ++ + + VPV+CKIR++ +++KTV YA+MLE+AGCQ
Sbjct: 1 MIAKRGHYGAFLQEEWDLLQRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQ 60
Query: 301 LLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVM 360
LL VHGRT +Q+G G ASWEHI AVRKA+ IPV ANGNIQCL DVE C+ TGV GVM
Sbjct: 61 LLTVHGRTKEQKGPMAGTASWEHIKAVRKAVGIPVFANGNIQCLQDVERCIQDTGVQGVM 120
Query: 361 TAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTL-----P 415
+AEGNL+NPALF G++ WELA EYLD+V Q+P L Y R H+F + HH L +
Sbjct: 121 SAEGNLHNPALFEGRSPAVWELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLRE 180
Query: 416 ENSDVRLLVG--KTNHIKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPW 473
E + V+ L G + LR DM R++ EG + P N P W
Sbjct: 181 ELAKVKTLEGVAAVSQALKLRCQEDMSRQQ-----EGVR--PADNLPAFH---------W 224
Query: 474 ICQPYVRPTPEQ 485
ICQPY+RP P +
Sbjct: 225 ICQPYIRPGPRE 236
>gi|344302627|gb|EGW32901.1| hypothetical protein SPAPADRAFT_136292 [Spathaspora passalidarum
NRRL Y-27907]
Length = 432
Score = 248 bits (633), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 211/370 (57%), Gaps = 24/370 (6%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 199
R + +G P+ ILAPMVD SEL WR+LSRRYG+ LC+TPM A F+ D K R + +
Sbjct: 14 RQAYEAMGEPKTILAPMVDHSELAWRILSRRYGAQLCFTPMFHARLFVTDPKYRARMWST 73
Query: 200 ----TPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
+ DRPL++QFC ND + L +AAKL E CD ID+N+GCPQ +A++G+YGA+L +
Sbjct: 74 MDGDSKVDRPLVVQFCANDPEYLLKAAKLVEDKCDAIDLNLGCPQGIARKGNYGAFLMEK 133
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
W L+ L+ +L + +PV+ KIRIY D K+++YA+M+ AG Q + +HGRT + +G
Sbjct: 134 WDLIHKLIRTLHDNLSIPVTAKIRIYDDWEKSLDYAKMVLDAGAQFITIHGRTREMKGQA 193
Query: 316 TGLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
TGLA+W+ + +R L + ANGNI D++ C +T VM+AEGNLYNP +F
Sbjct: 194 TGLANWKILKYLRDNLPSDQVFFANGNILYPNDLQRCERETTCDAVMSAEGNLYNPGVFW 253
Query: 374 GQTRPAWE-------LASEYLDLVAQYPVRLQYA--RGHVFNMCHHLLTLPENSDVRLLV 424
++ + + EY ++V Q + + H F + H L + + ++R +
Sbjct: 254 TESEDKDKQFARVDVMLREYFEIVKQCEGHASRSAMKPHFFKLLHAFLNV--HKELRPEI 311
Query: 425 GKT------NHIKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSS-NHHNLSLPPWICQP 477
GKT + + + K V+ L + + + +L + P+ S +P W CQP
Sbjct: 312 GKTSVHASFDEWEAIVKRVESLVAQIYEQPDIEELDVIVDGPIESWGGSYKKVPYWRCQP 371
Query: 478 YVRPTPEQQE 487
Y R +++
Sbjct: 372 YFRTVDGEKQ 381
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 72 AWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS-- 129
A+ +G P+ ILAPMVD SEL WR+LSRRYG+ LC+TPM A F+ D K R + +
Sbjct: 16 AYEAMGEPKTILAPMVDHSELAWRILSRRYGAQLCFTPMFHARLFVTDPKYRARMWSTMD 75
Query: 130 --TPEDRPLIIQ 139
+ DRPL++Q
Sbjct: 76 GDSKVDRPLVVQ 87
>gi|299473005|emb|CBN77406.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 461
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 133/355 (37%), Positives = 199/355 (56%), Gaps = 19/355 (5%)
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP 201
+ +GSP I+APMVD SEL +R L RRYGS+LCYTPM ++ F R+ P
Sbjct: 79 FYRSIGSPTRIVAPMVDQSELAFRRLCRRYGSNLCYTPMYNSKCFAVSSAYRKSNFDPHP 138
Query: 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTN 261
EDRPLI+QFCG+D L +AK E CD ID+N+GCPQ +A++G YGA+L ++W LL +
Sbjct: 139 EDRPLIVQFCGHDPALLLASAKFVEKECDAIDLNLGCPQGIARKGRYGAFLLEEWALLRD 198
Query: 262 LVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+VS+L + + +PV+CK+R+ V T+ +ML AG +++ VHGRT +Q+ T +W
Sbjct: 199 IVSTLAKNLSIPVTCKVRLLDSVEDTITMCKMLVAAGARIITVHGRTKEQKSKATAGCNW 258
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF-------TG 374
+ I +++AL +PV +NG I L DVE CL +TG GVM++EG L P LF TG
Sbjct: 259 DAIRRIKEALPVPVFSNGAISSLEDVERCLRETGCDGVMSSEGVLERPGLFSDNVSTVTG 318
Query: 375 QTRPAWELASEYLDLVAQYP------VRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTN 428
++ EY+DL Q P + RGH+F + + +D+R + K
Sbjct: 319 LKMSQDDIVLEYIDLAKQSPPHSRGRTSVPCLRGHMFKCLFTAVAV--RTDLRARLTKAR 376
Query: 429 HIKDLRKAVDMLRE-RFID---YHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYV 479
++++ + +RE R D + E + + P +S+ W Q V
Sbjct: 377 TLEEMEELALAVREARLADPESFDEEKTWYRRHTMPHTSDEWGTPQALWAAQAEV 431
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 44/67 (65%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
+ +GSP I+APMVD SEL +R L RRYGS+LCYTPM ++ F R+ PE
Sbjct: 80 YRSIGSPTRIVAPMVDQSELAFRRLCRRYGSNLCYTPMYNSKCFAVSSAYRKSNFDPHPE 139
Query: 133 DRPLIIQ 139
DRPLI+Q
Sbjct: 140 DRPLIVQ 146
>gi|367012726|ref|XP_003680863.1| hypothetical protein TDEL_0D00680 [Torulaspora delbrueckii]
gi|359748523|emb|CCE91652.1| hypothetical protein TDEL_0D00680 [Torulaspora delbrueckii]
Length = 427
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 138/372 (37%), Positives = 211/372 (56%), Gaps = 29/372 (7%)
Query: 137 IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEI 196
++ R +F +GSP I+APMVD SEL WR+LSRRYG+ L YTPM A F +K R+++
Sbjct: 17 MLGRQLFESIGSPTKIVAPMVDQSELAWRILSRRYGATLAYTPMFHAKLFATSEKYRRDM 76
Query: 197 ---LMSTPE-DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 252
+ PE DRPL++QFC ND + L +AA+L + CD +D+N+GCPQ +A++G YG++L
Sbjct: 77 WCEIDGNPEIDRPLVVQFCANDPEYLLQAARLVQDKCDAVDLNLGCPQGIARKGRYGSFL 136
Query: 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR 312
+DW L+ L+ L + +PV+ KIR++ + KT+EYA+M+ AG Q L VHGR +Q+
Sbjct: 137 MEDWDLIHKLIRQLHDNLDIPVTAKIRVFPEREKTLEYAKMVLDAGAQFLTVHGRLREQK 196
Query: 313 GMNTGLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
G TGLA WE + +R+ L + + NGNI D+ + +M+AEGNLYNP
Sbjct: 197 GQKTGLADWEIVKYLRENLPVDTVFFGNGNILYPEDISRGIKHIKCDAIMSAEGNLYNPG 256
Query: 371 LF----TGQTRPAW----ELASEYLDLVAQYPVRLQYAR----GHVFNMCHHLLTLPENS 418
+F + Q A+ +A EY ++V +Y Q +R H+F + L LP ++
Sbjct: 257 IFNTHESEQKDDAFPRVDHVAREYFEIVRKYK-ESQASRIAMKSHMFKILRPL--LPHHT 313
Query: 419 DVRLLVGKTNHI-------KDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSS-NHHNLSL 470
D+R + N + + KAV+ + E ++L + +++
Sbjct: 314 DIRAALASLNAKTPFEEWEEKVIKAVESVVEAIFAQENIQELDQVVKGAVELWGGFYVTV 373
Query: 471 PPWICQPYVRPT 482
P W CQPY RP
Sbjct: 374 PYWRCQPYFRPV 385
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 48/71 (67%), Gaps = 4/71 (5%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEI---LMS 129
+ +GSP I+APMVD SEL WR+LSRRYG+ L YTPM A F +K R+++ +
Sbjct: 23 FESIGSPTKIVAPMVDQSELAWRILSRRYGATLAYTPMFHAKLFATSEKYRRDMWCEIDG 82
Query: 130 TPE-DRPLIIQ 139
PE DRPL++Q
Sbjct: 83 NPEIDRPLVVQ 93
>gi|255714418|ref|XP_002553491.1| KLTH0D18084p [Lachancea thermotolerans]
gi|238934871|emb|CAR23053.1| KLTH0D18084p [Lachancea thermotolerans CBS 6340]
Length = 430
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 127/299 (42%), Positives = 180/299 (60%), Gaps = 19/299 (6%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM- 198
R +F +GSP I+APMVD SEL WR+LSRRYG+ L YTPM A F +K R+++
Sbjct: 21 RALFESIGSPEKIVAPMVDQSELAWRILSRRYGATLAYTPMFHAKMFATSEKYRRDMWCK 80
Query: 199 ---STPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
S DRPL++QFC NDS L AAKL E CD +D+N+GCPQ +AK+GHYG++L +D
Sbjct: 81 DDGSQELDRPLVVQFCANDSDYLLAAAKLIEDKCDAVDLNLGCPQGIAKKGHYGSFLMED 140
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
W L+ L+ +L +++PV+ KIR++ + KT+EYA+M+ AG Q L VHGR +Q+G
Sbjct: 141 WDLIHKLIRTLHDNLKIPVTAKIRVFSERAKTLEYAKMVLDAGAQFLTVHGRLREQKGQK 200
Query: 316 TGLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
TGLA W+ I +R+ L + ANGNI D+ C+ + VM+AEGNLYNP +F
Sbjct: 201 TGLADWDIIQYLRQELPKDTVFFANGNILYPEDISRCMNEIHCDAVMSAEGNLYNPGVFN 260
Query: 374 GQTRPAWELASEYLD-LVAQYPVRLQYARG----------HVFNMCHHLLTLPENSDVR 421
E+ +D L+ +Y ++ G H F + LPE++D+R
Sbjct: 261 TDFIGDKEMTFPRVDKLLREYFEVVKSCEGSHASKVAMKSHFFKILRPF--LPEHTDIR 317
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 20/109 (18%)
Query: 35 VAHPPNPIPQECHSPAARCKGTNVVPKDCHSSTARSDAWTQLGSPRFILAPMVDASELPW 94
A P PQ H+ AA+ +G + + +GSP I+APMVD SEL W
Sbjct: 2 AASRPQTEPQ--HTAAAKLQGRAL--------------FESIGSPEKIVAPMVDQSELAW 45
Query: 95 RLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM----STPEDRPLIIQ 139
R+LSRRYG+ L YTPM A F +K R+++ S DRPL++Q
Sbjct: 46 RILSRRYGATLAYTPMFHAKMFATSEKYRRDMWCKDDGSQELDRPLVVQ 94
>gi|358055549|dbj|GAA98669.1| hypothetical protein E5Q_05357 [Mixia osmundae IAM 14324]
Length = 542
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 122/242 (50%), Positives = 162/242 (66%), Gaps = 11/242 (4%)
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIA--DKKLRQEILM- 198
++ +G PR ++APMVD SEL WR++SR +G+ LCYTPM A F K +QE
Sbjct: 15 LYKSIGQPRHVVAPMVDQSELAWRIISRLHGADLCYTPMFHAGLFAGQHSAKYQQEYFGI 74
Query: 199 ------STPEDRPLIIQFCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGA 250
S DRPLI QFC +D + L +AA + D +D+N+GCPQ +AKRG YGA
Sbjct: 75 AEGEEGSAIIDRPLIAQFCAHDPEVLLKAASILADKGLVDAVDLNLGCPQGIAKRGRYGA 134
Query: 251 YLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVD 310
+L ++ L+ +L+S+L + + VPV+ K R + +TVEYARMLERAG Q+L +HGRT +
Sbjct: 135 FLMEEPELIESLISALHKRLSVPVTAKFRCFDTTERTVEYARMLERAGAQILTLHGRTRE 194
Query: 311 QRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
Q+G TGLA W I AV++A+ +PV ANGNI ADV C+AQTGV GVM+AEGNLYNP
Sbjct: 195 QKGQLTGLADWRKIEAVKRAVKVPVFANGNILTSADVTRCIAQTGVQGVMSAEGNLYNPF 254
Query: 371 LF 372
LF
Sbjct: 255 LF 256
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 110/250 (44%), Gaps = 46/250 (18%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIA--DKKLRQEIL-MS 129
+ +G PR ++APMVD SEL WR++SR +G+ LCYTPM A F K +QE ++
Sbjct: 16 YKSIGQPRHVVAPMVDQSELAWRIISRLHGADLCYTPMFHAGLFAGQHSAKYQQEYFGIA 75
Query: 130 TPEDRPLIIQRTIFPRLGS--PRFILAP--------MVDASEL----PWRLLSR-RYGSH 174
E+ II R + + + P +L +VDA +L P + R RYG+
Sbjct: 76 EGEEGSAIIDRPLIAQFCAHDPEVLLKAASILADKGLVDAVDLNLGCPQGIAKRGRYGAF 135
Query: 175 LCYTPMVSAHQFIADKKLRQEILMSTPEDR---PLIIQF-CGNDSKNLTEAAKLAEPHCD 230
L P + E L+S R P+ +F C + ++ E A++ E
Sbjct: 136 LMEEPELI------------ESLISALHKRLSVPVTAKFRCFDTTERTVEYARMLERA-- 181
Query: 231 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEY 290
G I + ++G DW + ++++AV+VPV I + T
Sbjct: 182 GAQILTLHGRTREQKGQLTGLA--DW----RKIEAVKRAVKVPVFANGNILTSADVT--- 232
Query: 291 ARMLERAGCQ 300
R + + G Q
Sbjct: 233 -RCIAQTGVQ 241
>gi|12835061|dbj|BAB23138.1| unnamed protein product [Mus musculus]
Length = 365
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 127/252 (50%), Positives = 164/252 (65%), Gaps = 23/252 (9%)
Query: 241 MVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQ 300
M+AKRGHYGA+LQ++W LL ++ + + VPV+CKIR++ +++KTV YA+MLE+AGCQ
Sbjct: 1 MIAKRGHYGAFLQEEWDLLQRMILLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQ 60
Query: 301 LLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVM 360
LL VHGRT +Q+G G ASWEHI AVRKA+ IPV ANGNIQCL DVE C+ TGV GVM
Sbjct: 61 LLTVHGRTKEQKGPMAGTASWEHIKAVRKAVGIPVFANGNIQCLQDVERCIQDTGVQGVM 120
Query: 361 TAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTL-----P 415
+AEGNL+NPALF ++ WELA EYLD+V Q+P L Y R H+F + HH L +
Sbjct: 121 SAEGNLHNPALFDDRSPAVWELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLRE 180
Query: 416 ENSDVRLLVG--KTNHIKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPW 473
E + V+ L G + LR DM R++ EG + P N P W
Sbjct: 181 ELAKVKTLEGVAAVSQALKLRCQEDMSRQQ-----EGVR--PADNLPAFH---------W 224
Query: 474 ICQPYVRPTPEQ 485
ICQPY+RP P +
Sbjct: 225 ICQPYIRPGPRE 236
>gi|345563607|gb|EGX46594.1| hypothetical protein AOL_s00097g610 [Arthrobotrys oligospora ATCC
24927]
Length = 517
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 154/425 (36%), Positives = 214/425 (50%), Gaps = 82/425 (19%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 199
R + +GSP+ I+APMVDASEL WR+LSR+Y + Y+PM+ A F + R++ L
Sbjct: 20 RAFYQSIGSPKRIVAPMVDASELAWRILSRKYNADAAYSPMLHARLFAETESYRRQSLRY 79
Query: 200 T----------------------------------------PEDRPLIIQFCGNDSKNLT 219
DRP +IQFC ND ++L
Sbjct: 80 APTSSSTPSPTSTSTLTSTSTPISSTSTNHNQPALPYDGDHKSDRPFLIQFCANDPQHLL 139
Query: 220 EAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR 279
AAK+A+ HCD +D+N+GCPQ +A++GHYGA+LQ+ L+ L+++L + + +PV+ KIR
Sbjct: 140 AAAKIAQHHCDAVDLNLGCPQGIARKGHYGAFLQEQPDLIYKLINTLHKELDIPVTAKIR 199
Query: 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIA 337
I T+ YA+M+ AG +L VHGR DQ+ NTGLA W +I +R L + A
Sbjct: 200 ILDTKEATLGYAKMVLDAGASILTVHGRRRDQKSHNTGLADWSYIRYLRDNLPPETVIFA 259
Query: 338 NGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQY---- 393
NGNI AD+EACL TG GVM AE NLYNPA+F T E +V QY
Sbjct: 260 NGNILYSADIEACLEITGADGVMCAETNLYNPAVFMPSTASFEERFPRVDIMVRQYLHII 319
Query: 394 ---------PV----RLQY--------ARGHVFNMCHHLLTLPENSDVRLLVGKT--NHI 430
PV R QY + H+F + H + T E +R +GK
Sbjct: 320 RDLTFGEGNPVVELSREQYRENASLICVKSHLFKLLHAVFTRKEYHYIRNTLGKATGQRF 379
Query: 431 KDLRKAVDMLRERFIDYHEGRKLWP--PPNYPM--------SSNHHNLSLPPWICQPYVR 480
++ K D L E+ ++ E KL P P + ++ L +P W CQPYVR
Sbjct: 380 DEILKLADDL-EKIVE--EQLKLTPETPEQWDDIMKEAGGPGADAKILRIPWWRCQPYVR 436
Query: 481 PTPEQ 485
PTP+Q
Sbjct: 437 PTPQQ 441
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL 127
+ +GSP+ I+APMVDASEL WR+LSR+Y + Y+PM+ A F + R++ L
Sbjct: 23 YQSIGSPKRIVAPMVDASELAWRILSRKYNADAAYSPMLHARLFAETESYRRQSL 77
>gi|440492298|gb|ELQ74875.1| tRNA-dihydrouridine synthase [Trachipleistophora hominis]
Length = 314
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 128/298 (42%), Positives = 182/298 (61%), Gaps = 8/298 (2%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
P +LAPM L +R LSR+YG+ LCYT MV +F+ K ++ + D PLI+
Sbjct: 9 PLMVLAPMYKNCGLAYRTLSRKYGTDLCYTEMVHTQKFLQTKNKKR--WLDDFVDSPLIV 66
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
Q CGND + +AA+ ID+N GCPQ++AKRG+YGAYLQDDW L + ++ SL
Sbjct: 67 QICGNDPCVMRKAAEYFTGAL-AIDVNFGCPQLIAKRGNYGAYLQDDWQLTSEILKSL-S 124
Query: 269 AVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+++ PV+CKIRI+ D +T++Y RM+E +GC++LAVHGRT +QRG NTGLA+W I V+
Sbjct: 125 SLEQPVTCKIRIFDDDKRTIDYVRMIEMSGCKMLAVHGRTREQRGQNTGLANWNTIKLVK 184
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ LTIPVI+NGNI C DV CL T GVM AE +LYNP +F+ + ++E+ EY D
Sbjct: 185 EHLTIPVISNGNILCRRDVIDCLNFTKCDGVMVAETHLYNPLIFSDVKKSSFEVLREYFD 244
Query: 389 LVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFID 446
L + + + H + + H + + + K ++R VD L ER D
Sbjct: 245 LCGE-ATPIYEIKSHTYKILHK--AFDQYDIYKCKIQKAGTFWEIRGIVDEL-ERLCD 298
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P +LAPM L +R LSR+YG+ LCYT MV +F+ K ++ + D PLI+
Sbjct: 9 PLMVLAPMYKNCGLAYRTLSRKYGTDLCYTEMVHTQKFLQTKNKKR--WLDDFVDSPLIV 66
Query: 139 QRT----IFPRLGSPRFILAPMVDASELPWRLLSRR--YGSHL 175
Q R + F A +D + +L+++R YG++L
Sbjct: 67 QICGNDPCVMRKAAEYFTGALAIDVNFGCPQLIAKRGNYGAYL 109
>gi|429966082|gb|ELA48079.1| hypothetical protein VCUG_00502 [Vavraia culicis 'floridensis']
Length = 315
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 119/247 (48%), Positives = 170/247 (68%), Gaps = 5/247 (2%)
Query: 143 FPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 202
F R G P +LAPM L +R LSR+YG++LCYT MV +F+ K ++ +
Sbjct: 4 FFRNG-PLMVLAPMYKNCGLAYRTLSRKYGANLCYTEMVHTQKFLQAKNKKR--WLDDFI 60
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
D PLI+Q CGND + +AA+ +D+N GCPQ++AKRG+YGAYLQ+DW L + +
Sbjct: 61 DSPLIVQICGNDPCVMRKAAEHFTSAL-AVDVNFGCPQLIAKRGNYGAYLQNDWQLTSEI 119
Query: 263 VSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
+ L +++ PV+CKIRI+ D +T+EYARM+E +GC++LAVHGRT +QRG NTGLA+W+
Sbjct: 120 IKRL-SSLERPVTCKIRIFDDDRRTIEYARMIEMSGCKMLAVHGRTREQRGPNTGLANWD 178
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWEL 382
I V++ L IPVI+NGNI C D+ CL+ T GVM AE +LYNP +F+G+ + ++E+
Sbjct: 179 AIKLVKEHLGIPVISNGNILCRKDITDCLSFTKCDGVMVAETHLYNPLIFSGENKSSFEI 238
Query: 383 ASEYLDL 389
+EY DL
Sbjct: 239 LNEYFDL 245
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 78 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLI 137
P +LAPM L +R LSR+YG++LCYT MV +F+ K ++ + D PLI
Sbjct: 8 GPLMVLAPMYKNCGLAYRTLSRKYGANLCYTEMVHTQKFLQAKNKKR--WLDDFIDSPLI 65
Query: 138 IQRT----IFPRLGSPRFILAPMVDASELPWRLLSRR--YGSHL 175
+Q R + F A VD + +L+++R YG++L
Sbjct: 66 VQICGNDPCVMRKAAEHFTSALAVDVNFGCPQLIAKRGNYGAYL 109
>gi|348667101|gb|EGZ06927.1| hypothetical protein PHYSODRAFT_289018 [Phytophthora sojae]
Length = 369
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 187/316 (59%), Gaps = 9/316 (2%)
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP 201
+ +GSP+ I+APMVD SEL +R+L R+ G+ CYTPM+ + F + R+++
Sbjct: 9 FYRAIGSPKRIVAPMVDQSELAFRMLCRKLGADCCYTPMLHSRLFAESAEYREKMFERHI 68
Query: 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTN 261
+DRPL++QFCGND K + AAK+ E HCD +D+N+GCPQ +A++G+YG++L D +
Sbjct: 69 QDRPLVVQFCGNDPKTVLAAAKMVEGHCDAVDLNLGCPQGIARKGNYGSFLMHDKDTVQA 128
Query: 262 LVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+V +L + VPV+ KIR++ D N+T+E+A ML++AGC LL VHGRT + W
Sbjct: 129 IVETLSANLNVPVTVKIRVFPDDNETLEFADMLQKAGCDLLTVHGRTKEMNKTAVREVDW 188
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT------GQ 375
+ I +++ LTIPVIANG I+ D+ C+ TG GVM++EG L NPALF G+
Sbjct: 189 DIIRRIKERLTIPVIANGGIETHEDIARCMEATGCDGVMSSEGLLENPALFADTNNKPGE 248
Query: 376 TRPAWELASEYLDLVAQY-PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLR 434
LA +YL+ Y P + R H+F + L + +SD+R + ++
Sbjct: 249 DTSFLALARQYLECATLYPPASDKIVRAHLFKILFQDLRV--HSDLRDALANAKSQDEMV 306
Query: 435 KAVDMLRERFIDYHEG 450
V+ L R + G
Sbjct: 307 DIVEELAVRLKEAESG 322
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 121/246 (49%), Gaps = 47/246 (19%)
Query: 71 DAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
D + +GSP+ I+APMVD SEL +R+L R+ G+ CYTPM+ + F + R+++
Sbjct: 8 DFYRAIGSPKRIVAPMVDQSELAFRMLCRKLGADCCYTPMLHSRLFAESAEYREKMFERH 67
Query: 131 PEDRPLIIQRTIFPRLGSPRFIL--APMV----DASELPW---RLLSRR--YGSHLCYTP 179
+DRPL++Q P+ +L A MV DA +L + ++R+ YGS L +
Sbjct: 68 IQDRPLVVQFCG----NDPKTVLAAAKMVEGHCDAVDLNLGCPQGIARKGNYGSFLMH-- 121
Query: 180 MVSAHQFIADKKLRQEIL--MSTPEDRPLI--IQFCGNDSKNLTEAAKLAEPHCDGIDIN 235
DK Q I+ +S + P+ I+ +D++ L A L + CD + ++
Sbjct: 122 ---------DKDTVQAIVETLSANLNVPVTVKIRVFPDDNETLEFADMLQKAGCDLLTVH 172
Query: 236 IGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPV--SCKIRIYQDVNKTVEYARM 293
+M + A + DW +++ +++ + +PV + I ++D+ AR
Sbjct: 173 GRTKEM-----NKTAVREVDW----DIIRRIKERLTIPVIANGGIETHEDI------ARC 217
Query: 294 LERAGC 299
+E GC
Sbjct: 218 MEATGC 223
>gi|412991352|emb|CCO16197.1| predicted protein [Bathycoccus prasinos]
Length = 473
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 131/335 (39%), Positives = 202/335 (60%), Gaps = 32/335 (9%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS--TPEDRPLII 208
F +APMVDAS+ +R+L +RYG+ YTPM+ + F+ R+E + T E RPL+
Sbjct: 98 FWVAPMVDASDHAFRILCKRYGADGSYTPMIHSKIFMESATFRKEYFSTHATEECRPLLA 157
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
QFC ND L +AA++ +P CDG+DIN GCPQ +AKRG+YGA+L DDWPL+ L+ L +
Sbjct: 158 QFCANDPTTLLKAARVIQPFCDGVDINFGCPQRIAKRGNYGAFLMDDWPLVEKLIKELDE 217
Query: 269 AVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+ VPV+ KIR+Y D+ K+VEYA+M+E+AG Q++AVHGRT +Q+ + +W+ I A++
Sbjct: 218 NLDVPVTAKIRVYDDLEKSVEYAKMVEKAGAQIIAVHGRTREQKRLAEYKCNWDFIKAIK 277
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG--------QTRPAW 380
+A+++PV+ANG ++ +++ CL TGV G ++AE L NP LF+ + +P +
Sbjct: 278 EAVSVPVLANGGVRNYQELQECLEYTGVDGYLSAEPLLGNPTLFSNPPFAPNPSEGQPPY 337
Query: 381 ELAS--------EYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVG----KTN 428
L + EY+D+ ++P + GH+ + H + E D+R + K
Sbjct: 338 PLENDHSFQVFLEYIDICRKHPTAPKIVFGHLHGIVGHWMH--EFHDLRDDLNENRRKYA 395
Query: 429 HIKDLRKAVDMLRERF--IDYHEGRKLWPPPNYPM 461
+ L + V+ LR R I EGR NYP+
Sbjct: 396 DLDALAEWVERLRARAKEIREKEGR------NYPI 424
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 106/224 (47%), Gaps = 33/224 (14%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS--TPEDRPLII 138
F +APMVDAS+ +R+L +RYG+ YTPM+ + F+ R+E + T E RPL+
Sbjct: 98 FWVAPMVDASDHAFRILCKRYGADGSYTPMIHSKIFMESATFRKEYFSTHATEECRPLLA 157
Query: 139 Q---RTIFPRLGSPRFILAPMVDASEL----PWRLLSR-RYGSHLCYT-PMVSAHQFIAD 189
Q L + R ++ P D ++ P R+ R YG+ L P+V
Sbjct: 158 QFCANDPTTLLKAAR-VIQPFCDGVDINFGCPQRIAKRGNYGAFLMDDWPLV-------- 208
Query: 190 KKLRQEILMSTPEDRPLIIQF-CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHY 248
+KL +E+ + D P+ + +D + E AK+ E I G + + Y
Sbjct: 209 EKLIKELDENL--DVPVTAKIRVYDDLEKSVEYAKMVEKAGAQIIAVHGRTREQKRLAEY 266
Query: 249 GAYLQDDWPLLTNLVSSLRQAVQVPV--SCKIRIYQDVNKTVEY 290
+W + + ++++AV VPV + +R YQ++ + +EY
Sbjct: 267 KC----NW----DFIKAIKEAVSVPVLANGGVRNYQELQECLEY 302
>gi|403218399|emb|CCK72889.1| hypothetical protein KNAG_0M00360 [Kazachstania naganishii CBS
8797]
Length = 414
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 137/367 (37%), Positives = 210/367 (57%), Gaps = 31/367 (8%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEI--- 196
R +F ++G PR +LAPMVD+SEL WR+LSR YG+ LCYTPM A F +K R+++
Sbjct: 21 RELFKQMGCPRRVLAPMVDSSELCWRILSRAYGATLCYTPMFHAKLFATSEKYRRDMWCP 80
Query: 197 LMSTP--EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
L T DRPLI+Q CGND + + + A+L + CD +D+N+GCPQ +A++GHYG++L +
Sbjct: 81 LDGTVGVADRPLIVQICGNDPEYILKTAELVQDRCDAVDLNLGCPQGIARKGHYGSFLME 140
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
+W ++ ++ +L + + VPV+ KIR++ D KT++YA+M+ AG Q+L VHGR +Q+G
Sbjct: 141 EWEVIEKIIRTLHEKLTVPVTAKIRVFPDREKTLQYAKMILDAGVQILTVHGRLREQKGQ 200
Query: 315 NTGLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
TGLA W+ I +R L + ANGN+ D+E CL TG VM+AEGNLYNP +F
Sbjct: 201 KTGLADWDVIRYLRDNLPAGTVMFANGNVLYPGDIERCLEYTGCDAVMSAEGNLYNPGVF 260
Query: 373 T------GQTRPAWE-LASEYLDLV----AQYPVRLQYARGHVFNMCHHLLTLPENSDVR 421
+ +T P + L E+ ++V P + + H F + LP ++D+R
Sbjct: 261 SDPAGDKDRTFPRVDVLLREFFEIVKLHAGDSPASRKAMKSHFFKILRPF--LPHHTDIR 318
Query: 422 LLVGKTNH---IKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSSNHHNL-----SLPPW 473
+ + + + + V + ER + E P + + S+P W
Sbjct: 319 SSIASLSAHTTLDEWEREVVVPVERAV---EAIYRTDPEDAIVDGPLEKWGGCYKSVPYW 375
Query: 474 ICQPYVR 480
CQPY R
Sbjct: 376 RCQPYFR 382
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 51/80 (63%), Gaps = 5/80 (6%)
Query: 65 SSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ 124
S + + Q+G PR +LAPMVD+SEL WR+LSR YG+ LCYTPM A F +K R+
Sbjct: 16 SKMTGRELFKQMGCPRRVLAPMVDSSELCWRILSRAYGATLCYTPMFHAKLFATSEKYRR 75
Query: 125 EI---LMST--PEDRPLIIQ 139
++ L T DRPLI+Q
Sbjct: 76 DMWCPLDGTVGVADRPLIVQ 95
>gi|428169432|gb|EKX38366.1| hypothetical protein GUITHDRAFT_158510 [Guillardia theta CCMP2712]
Length = 330
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 117/284 (41%), Positives = 182/284 (64%), Gaps = 5/284 (1%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM---STPE 202
+G+P+++ APMV+ SEL +R L RRYG+ LCYTPM A F+ + + R + PE
Sbjct: 40 IGAPKYVCAPMVEQSELAFRHLCRRYGTTLCYTPMFHARLFLENVQYRNDQFGEDDGKPE 99
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
DRPL +QFC N + AA+L + CD +D+N+GCPQ +AK+G+YG++L +D+ L+ +L
Sbjct: 100 DRPLFVQFCANHPETFLAAARLVQHRCDAVDLNLGCPQGIAKKGNYGSFLMEDFDLVFSL 159
Query: 263 VSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
V+ L + + +PV+ KIR++ D +KT++YA+ L+ AG Q+L VHGRT + +G + A W
Sbjct: 160 VNELHRGLDIPVTAKIRVFDDHDKTLQYAKCLQDAGAQILTVHGRTRENKGPDAVPADWS 219
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF-TGQTRPAWE 381
I +R+ ++IPV++NGNI DV CL +TG A VM+AE NPALF G+ A+
Sbjct: 220 LIKKIREHVSIPVVSNGNIVTFEDVVDCLDETGCAAVMSAEWLRRNPALFNNGEKVCAFR 279
Query: 382 LASEYLDLVAQYPVRLQYARGHVFNMCHHLL-TLPENSDVRLLV 424
+A EY +L ++P + + HVF + ++ LP + +V
Sbjct: 280 MALEYFELEREFPAPAGFVKAHVFKLLSTVVKKLPAEEETEAIV 323
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 50 AARCKGTNVVPKDCHSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTP 109
A + +G + PKD W +G+P+++ APMV+ SEL +R L RRYG+ LCYTP
Sbjct: 14 ACQGEGEELQPKDPLGPPVGWYFWNSIGAPKYVCAPMVEQSELAFRHLCRRYGTTLCYTP 73
Query: 110 MVSAHQFIADKKLRQEILM---STPEDRPLIIQ 139
M A F+ + + R + PEDRPL +Q
Sbjct: 74 MFHARLFLENVQYRNDQFGEDDGKPEDRPLFVQ 106
>gi|405117787|gb|AFR92562.1| tRNA dihydrouridine synthase [Cryptococcus neoformans var. grubii
H99]
Length = 607
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 148/398 (37%), Positives = 203/398 (51%), Gaps = 62/398 (15%)
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRR-------------------------YGSHLC 176
+ +GSP+F++APMVD SEL WRLLSR G+H+C
Sbjct: 45 FYRSIGSPKFVVAPMVDQSELAWRLLSRSPLPPALAGPSETVITPQGKTYIRHPGGAHVC 104
Query: 177 YTPMVSAHQFIADK------------------KLRQEILMSTPEDRPLIIQFCGNDSKNL 218
YTPM+ A F+ K I DRPLI+QFC ND L
Sbjct: 105 YTPMIHAKVFVDAKGEGGRNGDGQFCLSLDEEGGEGVIGGVEGGDRPLIVQFCANDPDIL 164
Query: 219 TEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI 278
AAK E + GCPQ +AKRGHYG++LQD+W L+ L+S+L + + VPV+ K
Sbjct: 165 LAAAKKVE--------HSGCPQGIAKRGHYGSFLQDEWELIHKLISTLHENLSVPVTAKF 216
Query: 279 RIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN 338
RI+ D++KT+ YARM+E AG Q+L HGRT + +G NTGLA WE+I V+KA+ +PV AN
Sbjct: 217 RIFPDLDKTIAYARMMEAAGAQILTCHGRTREMKGQNTGLADWEYIREVKKAVKVPVFAN 276
Query: 339 GNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWE-----LASEYLDLVA-- 391
GNI DV+ C+ TG GVM+AEGNL NPA+F P LA YLD+V
Sbjct: 277 GNILYREDVDRCMEVTGCDGVMSAEGNLSNPAIFMPPEHPHAHPPITMLAHRYLDIVEAL 336
Query: 392 QYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGK-TNHIKDLRKAVDMLRERFIDYHEG 450
P + H+F + +L E V++ + ++ + R+ + + R E
Sbjct: 337 DTPTAGSAIKAHLFRLLKPVLDTDEELRVQIATCRWSDGMDGFREIIRDIERRCAPVREA 396
Query: 451 RKL-WPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQQE 487
W PP + + SLP + QP +R P E
Sbjct: 397 LGADWRPPAVDPKTGYR--SLPMFAAQPQIRAKPVSTE 432
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 39/82 (47%), Gaps = 25/82 (30%)
Query: 64 HSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRR----------------------- 100
H D + +GSP+F++APMVD SEL WRLLSR
Sbjct: 37 HEKLGGYDFYRSIGSPKFVVAPMVDQSELAWRLLSRSPLPPALAGPSETVITPQGKTYIR 96
Query: 101 --YGSHLCYTPMVSAHQFIADK 120
G+H+CYTPM+ A F+ K
Sbjct: 97 HPGGAHVCYTPMIHAKVFVDAK 118
>gi|328873275|gb|EGG21642.1| tRNA-dihydrouridine synthase 1-like protein [Dictyostelium
fasciculatum]
Length = 426
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 115/297 (38%), Positives = 186/297 (62%), Gaps = 3/297 (1%)
Query: 147 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 206
+P +LAPMV+ S L +RLL+R++G+ + YTPM ++ F D R + P+DRP+
Sbjct: 52 SNPIKVLAPMVEHSLLAFRLLTRKFGADVVYTPMYNSKIFSHDATYRCN-FSTNPQDRPM 110
Query: 207 IIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSL 266
++QFCGN+ ++ ++AK+ E HCD +DIN+GCPQ +A++G YGA+L + ++ +V +L
Sbjct: 111 VVQFCGNEVDHIVKSAKMVEDHCDAVDINLGCPQGIARKGFYGAFLLERPDIVLPMVRAL 170
Query: 267 RQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
+ ++VP+ CKIR+ D++ T++ A L+ AGCQLL VHGRT +Q+G A W+ I
Sbjct: 171 HKELKVPIFCKIRLLPDIDDTIKLALQLQEAGCQLLTVHGRTKEQKGEFLCHADWKAIRR 230
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEY 386
V++A++IPV ANG++ D+ CL ++G GVM+A+G L NPA+F+G ++ EY
Sbjct: 231 VKEAVSIPVFANGSVDEYKDIVPCLEESGADGVMSADGILANPAMFSGLDMTLTDVCREY 290
Query: 387 LDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
LD+ Q P R H + M + + D+R + K + D+R +D + R
Sbjct: 291 LDICDQIPTDFFLIRSHCYKMLKR--HMDDYEDIRYKISKMIDVTDMRGILDEIDRR 345
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 77 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 136
+P +LAPMV+ S L +RLL+R++G+ + YTPM ++ F D R + P+DRP+
Sbjct: 52 SNPIKVLAPMVEHSLLAFRLLTRKFGADVVYTPMYNSKIFSHDATYRCN-FSTNPQDRPM 110
Query: 137 IIQ 139
++Q
Sbjct: 111 VVQ 113
>gi|366987597|ref|XP_003673565.1| hypothetical protein NCAS_0A06240 [Naumovozyma castellii CBS 4309]
gi|342299428|emb|CCC67182.1| hypothetical protein NCAS_0A06240 [Naumovozyma castellii CBS 4309]
Length = 427
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 134/374 (35%), Positives = 201/374 (53%), Gaps = 35/374 (9%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 199
R +F ++G P I+APMVD SEL WR+LSR+YG+ L YTPM A F K R ++ S
Sbjct: 11 RQLFEKIGKPTKIVAPMVDQSELAWRILSRKYGATLAYTPMFHAKLFATSDKYRNDMWCS 70
Query: 200 TP----EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
DRPL++QFC ND + L AAKL + CD +D+N+GCPQ +A++GHYG++L ++
Sbjct: 71 LDGDPTTDRPLVVQFCANDPEYLLTAAKLVQDKCDAVDLNLGCPQGIARKGHYGSFLMEE 130
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
W L+ L+ +L + VPV+ KIR++ + KT++YA+M+ AG Q L VHGR + +G
Sbjct: 131 WDLIHKLIKTLHDNLDVPVTAKIRVFPEREKTLDYAKMVLDAGAQFLTVHGRLREMKGQK 190
Query: 316 TGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
TGLA W+ I +R L ANGNI D+ C+ + VM+AEGNLYNP +F
Sbjct: 191 TGLADWDIIRYLRDNLPRDTVFFANGNILYPDDISRCMNEIHCDAVMSAEGNLYNPGVFN 250
Query: 374 GQTRPAWELASEYL-----DLVAQYPVRLQYARG----------HVFNMCHHLLTLPENS 418
G + + + ++ +Y +++ G H F + LP+++
Sbjct: 251 GDEEMDVDANKDKIFPRVDKVIREYFEIVKHCEGSQASRIAMKSHFFKILRPF--LPQHT 308
Query: 419 DVRLLVGKTN--------HIKDLRKAVDMLRERF--IDYHEGRKLWPPPNYPMSSNHHNL 468
D+R + K N K ++ D++ F D E ++ P H
Sbjct: 309 DIRSELSKMNAKIPFEEWDTKVVKPVEDVVARIFEEQDIEEKDRIIVGPKELWGG--HYK 366
Query: 469 SLPPWICQPYVRPT 482
++P W CQPY RP
Sbjct: 367 TVPYWRCQPYFRPV 380
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP- 131
+ ++G P I+APMVD SEL WR+LSR+YG+ L YTPM A F K R ++ S
Sbjct: 14 FEKIGKPTKIVAPMVDQSELAWRILSRKYGATLAYTPMFHAKLFATSDKYRNDMWCSLDG 73
Query: 132 ---EDRPLIIQ 139
DRPL++Q
Sbjct: 74 DPTTDRPLVVQ 84
>gi|134055604|emb|CAK37250.1| unnamed protein product [Aspergillus niger]
Length = 466
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 133/391 (34%), Positives = 213/391 (54%), Gaps = 37/391 (9%)
Query: 127 LMSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSH------LCYTPM 180
+ + E R ++ R + +GSP++I+APMVD SE WR+L+R + + L Y+PM
Sbjct: 21 IAAAAEPRKKLLGRQFYESIGSPKYIIAPMVDRSEFAWRMLTRSFMTPEDQKKVLAYSPM 80
Query: 181 VSAHQFIADKKLRQEILMSTPE-DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCP 239
A F L P DRPL +QFC ND + EAA+ P+CD +D+N+GCP
Sbjct: 81 YHARLFREQANDESPYLDGNPSFDRPLFVQFCANDPDDFLEAARHVAPYCDAVDLNLGCP 140
Query: 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC 299
Q +AKRGHYGA+LQ+DW L+ L++ L + +PV+ K RI + KT+EYA+M+ AG
Sbjct: 141 QGIAKRGHYGAFLQEDWDLIYRLINRLHNELSIPVTAKFRIQETKEKTLEYAKMILSAGA 200
Query: 300 QLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVA 357
++ VHGR +Q+G NTGLA W +I +R L + ANGN D++ CL +TG
Sbjct: 201 NIITVHGRRREQKGHNTGLADWSYIRYLRDNLPPETVIFANGNNLNYEDLDRCLEETGAD 260
Query: 358 GVMTAEGNLYNPALFT-----------GQTRPAWELASEYLDLVAQYPVRLQYARGHVFN 406
GVM+AEGNL +P++F+ + P + A P L +GH+F
Sbjct: 261 GVMSAEGNLSDPSIFSKPPPTTETTEEAEDGPPKKKQKREKSKRAASP-SLGVMQGHLFQ 319
Query: 407 MCHHLLTLPENSDVRLLVGKT---------NHIKDLRKAVDMLRERFIDYHEGRKLWPPP 457
+ ++++ +++VR + ++ N + + +A+ + + + E + P
Sbjct: 320 LLRPMVSV--HTNVRDALARSRPGDMPAFENVLALVEQAIKKGLKEYEQFPE--RFEKDP 375
Query: 458 NYPMSSNHHNLS---LPPWICQPYVRPTPEQ 485
N ++ + ++ P WICQP++RP PE+
Sbjct: 376 NQELTGSKATIAEYGRPWWICQPHIRPLPEE 406
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSH------LCYTPMVSAHQFIADKKLRQEI 126
+ +GSP++I+APMVD SE WR+L+R + + L Y+PM A F
Sbjct: 37 YESIGSPKYIIAPMVDRSEFAWRMLTRSFMTPEDQKKVLAYSPMYHARLFREQANDESPY 96
Query: 127 LMSTPE-DRPLIIQ 139
L P DRPL +Q
Sbjct: 97 LDGNPSFDRPLFVQ 110
>gi|167381962|ref|XP_001735922.1| tRNA-dihydrouridine synthase [Entamoeba dispar SAW760]
gi|165901877|gb|EDR27854.1| tRNA-dihydrouridine synthase, putative [Entamoeba dispar SAW760]
Length = 340
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 122/332 (36%), Positives = 197/332 (59%), Gaps = 14/332 (4%)
Query: 130 TPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD 189
ED + R +LG+P+ ILAPMVD S+L +R+L RR+G +LCYTPMV + F+
Sbjct: 7 NKEDSKFLFYR---EKLGNPQHILAPMVDGSDLTFRILVRRHGVNLCYTPMVLSKMFVES 63
Query: 190 KKLRQEILMS-TPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHY 248
K R E++ S P++RP+IIQ G+D+ + AK + +CD IDIN+GCPQ +A++G+Y
Sbjct: 64 KVYRNEVVNSLDPKERPIIIQVVGSDANEMARTAKFLQSYCDAIDINLGCPQKIAQKGNY 123
Query: 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308
GAYL D+ +V+++ +AV +PV CK+R+++D +KT+++ ML+ G +AVHGRT
Sbjct: 124 GAYLALDFDHTKEIVNAVIEAVNIPVYCKVRVFEDEDKTMKFVEMLQECGIWGIAVHGRT 183
Query: 309 VDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368
++++ A W +I +++ L IPVIANG ++ +E C T G M G L N
Sbjct: 184 INEKQSMNYHARWNYIAKIKEQLKIPVIANGEMRSREKIEECKKVTHSDGYMIGFGLLMN 243
Query: 369 PALFTGQTRPAWELASEYLDLVAQYP----VRLQYARGHVFNMCHHLLTLPENSDVRLLV 424
P + G ++A EY+++V +Y VRL +GH+ M L + + D+ +
Sbjct: 244 PGMCEGIIDNNEQIAEEYINIVFEYKDKNLVRLSDVKGHLIKMM--LYKIKQKKDLLKEI 301
Query: 425 GKTNHIKD----LRKAVDMLRERFIDYHEGRK 452
G+ ++ L K +++ R+R I+ E K
Sbjct: 302 GEARSFEECKTWLEKVIELNRKRSIETSENDK 333
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS-TPED 133
+LG+P+ ILAPMVD S+L +R+L RR+G +LCYTPMV + F+ K R E++ S P++
Sbjct: 19 KLGNPQHILAPMVDGSDLTFRILVRRHGVNLCYTPMVLSKMFVESKVYRNEVVNSLDPKE 78
Query: 134 RPLIIQ 139
RP+IIQ
Sbjct: 79 RPIIIQ 84
>gi|444316610|ref|XP_004178962.1| hypothetical protein TBLA_0B06180 [Tetrapisispora blattae CBS 6284]
gi|387512002|emb|CCH59443.1| hypothetical protein TBLA_0B06180 [Tetrapisispora blattae CBS 6284]
Length = 432
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 136/371 (36%), Positives = 202/371 (54%), Gaps = 32/371 (8%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 199
R +F + P I+APMVD SEL WR+LSRRYG+ L YTPM A F +K +++
Sbjct: 18 RELFNHINKPTKIVAPMVDQSELAWRILSRRYGATLAYTPMFHAKLFATSEKYGKDMWSE 77
Query: 200 TPED----RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
D RPL++QFC ND L +AAKL + CD +D+N+GCPQ +AK+GHYG++L ++
Sbjct: 78 YDGDKDIDRPLVVQFCANDPDYLLQAAKLVQDKCDAVDLNLGCPQGIAKKGHYGSFLMEE 137
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
W L+ +L+ L + +PV+ KIRIY+D K++EYA+M+ AG Q L VHGR DQ+G
Sbjct: 138 WDLIHSLIKKLHDNLNIPVTAKIRIYEDKEKSLEYAKMVLDAGAQFLTVHGRIRDQKGQK 197
Query: 316 TGLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
TGLA+W+ I +R L + ANGNI D+ + + +M+AEGNLYNP +F
Sbjct: 198 TGLANWDTIKYIRDNLPKETVFFANGNILYPEDIARGMNELHCDAIMSAEGNLYNPGIFN 257
Query: 374 -------GQTRPAWE-LASEYLDLVAQYPVRLQYA----RGHVFNMCHHLLTLPENSDVR 421
+ P + + EY ++V +Y + + + H F + L ++D+R
Sbjct: 258 TDFINDKDKIFPRVDKIIREYFEIVKKYSDKSNASKIAMKSHFFKILRPFLG--NHTDIR 315
Query: 422 LLVGKTNHI-------KDLRKAV-DMLRERFI--DYHEGRKLWPPPNYPMSSNHHNLSLP 471
+ N D+ K V D++ E F D E + ++ ++P
Sbjct: 316 SKLASLNAKMPFDRWENDVVKPVEDIVEEIFKQEDIKEKDVIIVGEKQMWGGSYR--TVP 373
Query: 472 PWICQPYVRPT 482
W CQPY RP
Sbjct: 374 YWRCQPYFRPV 384
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
+ + P I+APMVD SEL WR+LSRRYG+ L YTPM A F +K +++
Sbjct: 21 FNHINKPTKIVAPMVDQSELAWRILSRRYGATLAYTPMFHAKLFATSEKYGKDMWSEYDG 80
Query: 133 ----DRPLIIQ 139
DRPL++Q
Sbjct: 81 DKDIDRPLVVQ 91
>gi|428172536|gb|EKX41444.1| hypothetical protein GUITHDRAFT_158205 [Guillardia theta CCMP2712]
Length = 244
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 106/232 (45%), Positives = 163/232 (70%)
Query: 143 FPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 202
+ +LG+PR+I+APMVD SEL +R++ R+Y LCYTPM+ + F+ + R++ L S +
Sbjct: 12 WEKLGNPRWIMAPMVDQSELAFRMMGRKYNCDLCYTPMLHSRMFVNNAHYRKDYLQSFEK 71
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
DRPLI+QFC N+ L +AAK E CD +D+N+GCPQ +A+RG YG++L +DW + +L
Sbjct: 72 DRPLIVQFCANNPNTLLQAAKYVEDSCDAVDLNLGCPQEIARRGRYGSFLMEDWDRIHDL 131
Query: 263 VSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
V +++Q+++VP+ KIR++ ++++T+EYA+M+E AG +A+HGRT Q+G N G A+ +
Sbjct: 132 VLTMKQSLKVPIWAKIRLFPEISQTIEYAKMIEAAGASAIAIHGRTRKQKGNNPGPANLD 191
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG 374
I V K L +PVIANGNI+ + + CL +T VM+A G L P LF+G
Sbjct: 192 SIREVAKHLRVPVIANGNIRTFEEAQECLRKTECHAVMSACGLLVTPNLFSG 243
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 49/67 (73%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
W +LG+PR+I+APMVD SEL +R++ R+Y LCYTPM+ + F+ + R++ L S +
Sbjct: 12 WEKLGNPRWIMAPMVDQSELAFRMMGRKYNCDLCYTPMLHSRMFVNNAHYRKDYLQSFEK 71
Query: 133 DRPLIIQ 139
DRPLI+Q
Sbjct: 72 DRPLIVQ 78
>gi|407039419|gb|EKE39634.1| dihydrouridine synthase (Dus) family protein [Entamoeba nuttalli
P19]
Length = 339
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 120/318 (37%), Positives = 191/318 (60%), Gaps = 11/318 (3%)
Query: 144 PRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS-TPE 202
+LG+P+ ILAPMVD S+L +R+L RR+G +LCYTPMV + F+ K R E++ S P+
Sbjct: 17 EKLGNPQNILAPMVDGSDLTFRILVRRHGVNLCYTPMVLSKMFVESKVYRNEVVNSLDPK 76
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
+RP+IIQ G+D+ + AK + +CD IDIN+GCPQ +A++G+YGAYL D+ +
Sbjct: 77 ERPIIIQIVGSDANEMARTAKFLQSYCDAIDINLGCPQKIAQKGNYGAYLALDFDHTKEI 136
Query: 263 VSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
V+++ +AV VPV CK+R+++D +KT+ + ML+ G +AVHGRT+ ++ A W
Sbjct: 137 VNAVIEAVNVPVYCKVRVFEDEDKTMRFVEMLQECGIWGIAVHGRTITEKQSMNYHARWN 196
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWEL 382
+I +++ L IPVIANG ++ +E C T G M G L NP + G ++
Sbjct: 197 YIAKIKEHLKIPVIANGEMRSREKIEECKKVTRSDGYMIGFGLLMNPGMCEGIIDNNEQI 256
Query: 383 ASEYLDLVAQYP----VRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKD----LR 434
A EY+++V +Y VRL +GH+ M L + + D+ +G+ ++ L
Sbjct: 257 AEEYINIVFEYKDKNLVRLSDVKGHLIKMM--LYKIKQKKDLLKEIGEARSFEECKTWLE 314
Query: 435 KAVDMLRERFIDYHEGRK 452
K +++ R+R I+ E K
Sbjct: 315 KVIELNRKRSIETSENDK 332
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 56/85 (65%), Gaps = 5/85 (5%)
Query: 56 TNVVPKDCHSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQ 115
TN + KD R +LG+P+ ILAPMVD S+L +R+L RR+G +LCYTPMV +
Sbjct: 3 TNDLNKDSKFLFYRE----KLGNPQNILAPMVDGSDLTFRILVRRHGVNLCYTPMVLSKM 58
Query: 116 FIADKKLRQEILMS-TPEDRPLIIQ 139
F+ K R E++ S P++RP+IIQ
Sbjct: 59 FVESKVYRNEVVNSLDPKERPIIIQ 83
>gi|83032642|ref|XP_729128.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23486029|gb|EAA20693.1| Drosophila melanogaster CG3645 gene product [Plasmodium yoelii
yoelii]
Length = 338
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 114/306 (37%), Positives = 178/306 (58%), Gaps = 3/306 (0%)
Query: 139 QRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM 198
++T + LG+P+++LAPMVD SELP+RLL R Y L +TPM+ + F+ K R
Sbjct: 15 EKTYWETLGNPKYVLAPMVDLSELPFRLLCRNYNCDLAFTPMLHSKNFVEHSKYRIGYFK 74
Query: 199 STPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL 258
+D+PLI QFCGND + +A + +G+DIN+GCPQ +AK+G+YGA+L
Sbjct: 75 KCDQDKPLIAQFCGNDPSTILKAIDYIKDDVNGVDINLGCPQQIAKKGNYGAFLLHKHDE 134
Query: 259 LTNLVSSLRQAVQVPVSCKIR-IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
+ NL+S + VP+SCKIR I D KT+ L+ +++ VHGRT +++G+N
Sbjct: 135 VVNLISDITNNCNVPISCKIRKIDNDYQKTLNLCYDLQSRNVKMITVHGRTKEEKGVNIK 194
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
+E I +++ L IP+IANG+I+ D+E CL T VM AE L P+ F+ +
Sbjct: 195 ECDYEIIKIIKERLNIPIIANGSIEHFEDIEKCLNYTKTDAVMCAEILLEKPSFFSNKNI 254
Query: 378 PAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAV 437
+L +EY DL +Y +Y + H+F M + T+ ++D+R L+ + I D
Sbjct: 255 NTVDLVNEYYDLFLKYETNTKYLKSHLFKMLYKYFTV--HTDLRDLLNNCHSINDYLSFR 312
Query: 438 DMLRER 443
D+L ++
Sbjct: 313 DLLNQK 318
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%)
Query: 61 KDCHSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK 120
K+ + W LG+P+++LAPMVD SELP+RLL R Y L +TPM+ + F+
Sbjct: 7 KNVNKKEYEKTYWETLGNPKYVLAPMVDLSELPFRLLCRNYNCDLAFTPMLHSKNFVEHS 66
Query: 121 KLRQEILMSTPEDRPLIIQ 139
K R +D+PLI Q
Sbjct: 67 KYRIGYFKKCDQDKPLIAQ 85
>gi|68076617|ref|XP_680228.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56501126|emb|CAH94784.1| conserved hypothetical protein [Plasmodium berghei]
Length = 338
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 114/304 (37%), Positives = 175/304 (57%), Gaps = 3/304 (0%)
Query: 141 TIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 200
T + LG+P+++LAPMVD SELP+RLL R Y L +TPM+ + F+ K R
Sbjct: 17 TYWETLGNPKYVLAPMVDLSELPFRLLCRNYNCDLAFTPMLHSKNFVEHSKYRTGYFKKC 76
Query: 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
+D+PLI QFCGND + A + +G+DIN+GCPQ +AK+G+YGA+L +
Sbjct: 77 DQDKPLIAQFCGNDPSTILRAIDYIKDEVNGVDINLGCPQQIAKKGNYGAFLLHKHDEVV 136
Query: 261 NLVSSLRQAVQVPVSCKIR-IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA 319
NL+S + VP+SCKIR I D KT+ L+ +++ VHGRT +++G+N
Sbjct: 137 NLISDITNNCNVPISCKIRKIDNDYQKTLNLCYDLQSRNVKMITVHGRTKEEKGVNIKEC 196
Query: 320 SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPA 379
+E I +++ L IP+IANG+I+ D+E CL T VM AE L P+ F+ +
Sbjct: 197 DYEIIKIIKERLNIPIIANGSIENFEDIEKCLNYTKTDAVMCAEILLEKPSFFSNKNINT 256
Query: 380 WELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDM 439
+L +EY DL +Y +Y + H+F M + T+ ++D+R L+ + I D D+
Sbjct: 257 IDLVNEYYDLFLKYETNTKYLKSHLFKMLYKYFTV--HTDLRDLLNNCHSINDYLSFRDL 314
Query: 440 LRER 443
L ++
Sbjct: 315 LNQK 318
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 42/67 (62%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
W LG+P+++LAPMVD SELP+RLL R Y L +TPM+ + F+ K R +
Sbjct: 19 WETLGNPKYVLAPMVDLSELPFRLLCRNYNCDLAFTPMLHSKNFVEHSKYRTGYFKKCDQ 78
Query: 133 DRPLIIQ 139
D+PLI Q
Sbjct: 79 DKPLIAQ 85
>gi|156085996|ref|XP_001610407.1| dihydrouridine synthase [Babesia bovis T2Bo]
gi|154797660|gb|EDO06839.1| dihydrouridine synthase, putative [Babesia bovis]
Length = 355
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 184/308 (59%), Gaps = 7/308 (2%)
Query: 138 IQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL 197
++ + +G PR++ APMV+ SELP+RLL RRY L YTPM+ F+ ++K R
Sbjct: 1 MEDDFWASIGRPRYVAAPMVNQSELPFRLLCRRYNVDLTYTPMLHGRIFVENEKYRAVHF 60
Query: 198 MSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
++ +DRPLI Q CG+D+ +T+AA+L + H +D+N+GCPQ +AK GHYG++L D+
Sbjct: 61 QTSDDDRPLIAQVCGDDAGTITQAARLLKGHVSAVDLNLGCPQAIAKDGHYGSFLLDEPD 120
Query: 258 LLTNLVSSLRQAVQVPVSCKIR-IYQD-VNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
L+T +VS + + V + V+CKIR + +D + T+ LE++GC+ L VHGR ++G N
Sbjct: 121 LVTGIVSRVTREVGIAVTCKIRKVDKDSLQSTLNLCYSLEQSGCKALTVHGRHRSEKGTN 180
Query: 316 TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375
G A W+ I ++ L IPVIANG I+ ADVE CL+ TG VM++E L P LF+G
Sbjct: 181 VGAADWDAIRIIKSRLRIPVIANGGIETFADVERCLSYTGADAVMSSESLLERPYLFSGI 240
Query: 376 TRPAWELASEYLDLVAQYPVRLQYA-RGHVFN-MCHHLLTLPENSDVRLLVGKTNHIKDL 433
T ++ EYL +V +YP + RGH F + H PE +R + + D
Sbjct: 241 TYDHLDIMDEYLGIVRRYPDQSPCCIRGHAFKILFQHCQRHPE---IRNRLTDAMSLDDF 297
Query: 434 RKAVDMLR 441
V LR
Sbjct: 298 SSVVSYLR 305
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 45/69 (65%)
Query: 71 DAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
D W +G PR++ APMV+ SELP+RLL RRY L YTPM+ F+ ++K R ++
Sbjct: 4 DFWASIGRPRYVAAPMVNQSELPFRLLCRRYNVDLTYTPMLHGRIFVENEKYRAVHFQTS 63
Query: 131 PEDRPLIIQ 139
+DRPLI Q
Sbjct: 64 DDDRPLIAQ 72
>gi|67479621|ref|XP_655192.1| dihydrouridine synthase (Dus) family protein [Entamoeba histolytica
HM-1:IMSS]
gi|56472312|gb|EAL49806.1| dihydrouridine synthase (Dus) family protein [Entamoeba histolytica
HM-1:IMSS]
gi|449704590|gb|EMD44804.1| tRNA-dihydrouridine synthase, putative [Entamoeba histolytica KU27]
Length = 339
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 118/318 (37%), Positives = 190/318 (59%), Gaps = 11/318 (3%)
Query: 144 PRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS-TPE 202
+LG+P+ ILAPMVD S+L +R+L RR+G +LCYTPMV + F+ K R E++ S P+
Sbjct: 17 EKLGNPQNILAPMVDGSDLTFRILVRRHGVNLCYTPMVLSKMFVESKVYRNEVVNSLDPK 76
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
++P+IIQ G+D+ + AK + +CD IDIN+GCPQ +A++G+YGAYL D+ +
Sbjct: 77 EQPIIIQIVGSDANEMARTAKFLQSYCDAIDINLGCPQKIAQKGNYGAYLALDFDHTKEI 136
Query: 263 VSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
V+++ +AV +PV CK+R+++D KT+ + ML+ G +AVHGRT+ ++ A W
Sbjct: 137 VNAVIEAVNIPVYCKVRVFEDEEKTMRFVEMLQECGIWGIAVHGRTITEKQSMNYHARWN 196
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWEL 382
+I +++ L IPVIANG ++ +E C T G M G L NP + G ++
Sbjct: 197 YIAKIKERLKIPVIANGEMRSREKIEECKKVTHSDGYMIGFGLLMNPGMCEGTIDNNEQI 256
Query: 383 ASEYLDLVAQYP----VRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKD----LR 434
A EY+++V +Y VRL +GH+ M L + + D+ +G+ ++ L
Sbjct: 257 AEEYINIVFEYKDKNLVRLSDVKGHLIKMM--LYKIKQKKDLLKEIGEARSFEECKTWLE 314
Query: 435 KAVDMLRERFIDYHEGRK 452
K +++ R+R I+ E K
Sbjct: 315 KVIELNRKRNIETSENDK 332
Score = 75.1 bits (183), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 56/85 (65%), Gaps = 5/85 (5%)
Query: 56 TNVVPKDCHSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQ 115
TN + KD R +LG+P+ ILAPMVD S+L +R+L RR+G +LCYTPMV +
Sbjct: 3 TNDLNKDSKFLFYRE----KLGNPQNILAPMVDGSDLTFRILVRRHGVNLCYTPMVLSKM 58
Query: 116 FIADKKLRQEILMS-TPEDRPLIIQ 139
F+ K R E++ S P+++P+IIQ
Sbjct: 59 FVESKVYRNEVVNSLDPKEQPIIIQ 83
>gi|401886416|gb|EJT50452.1| tRNA dihydrouridine synthase [Trichosporon asahii var. asahii CBS
2479]
Length = 453
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 152/432 (35%), Positives = 213/432 (49%), Gaps = 100/432 (23%)
Query: 64 HSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLR 123
H + D + +GSP++++APMVD SEL WRLLS+ +P+
Sbjct: 55 HKKLSGYDFYRAIGSPKYVVAPMVDQSELAWRLLSK--------SPL------------- 93
Query: 124 QEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY-----GSHLCYT 178
P D G P +I AP+ D P + R+Y G+HL YT
Sbjct: 94 -------PPD-----------VAGPPEWIEAPLPDGPAGPSQ--PRKYARYAGGAHLTYT 133
Query: 179 PMVSAHQFIADKK-----------------LRQEILMSTPEDRPLII------------- 208
PM+ A F ++ R+ + DRPL +
Sbjct: 134 PMIHARVFSESRQNSRGGDPQFNITCNEEGNRKTLAGIEGGDRPLFVQVSHQLAGSKFPL 193
Query: 209 ------------QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
QFC ND L AAK + CD +DIN GCPQ +AKRG YG++L +DW
Sbjct: 194 TLDGWMSVILTLQFCANDPDVLLSAAKKVQNRCDAVDINFGCPQGIAKRGKYGSFLMEDW 253
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
L+ L+S+L + VPV+ K RI+ +V KTV YA+M+E AG Q+L HGR +Q+G T
Sbjct: 254 DLIARLISTLHVNLTVPVTAKFRIFPEVEKTVRYAQMMEAAGAQILTCHGRLREQKGPAT 313
Query: 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT 376
GLA W+ I AV++A+++PV ANGNI D C+ TG GVM+AEGNL NPALF
Sbjct: 314 GLADWDQIKAVKEAVSVPVFANGNILYADDALRCMEYTGCDGVMSAEGNLNNPALFADPK 373
Query: 377 RP-----AWELASEYLDLVAQY--PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGK--- 426
P A LA YLD+VA+ P + H+F++ +L E+ D+R++ GK
Sbjct: 374 SPNAYVAATALARRYLDIVAKLDTPTAGSAIKAHLFHLLKPMLD--EHEDLRVIFGKQGV 431
Query: 427 TNHIKDLRKAVD 438
+ + R A+D
Sbjct: 432 DDKVAYYRAALD 443
>gi|389585875|dbj|GAB68605.1| tRNA-dihydrouridine synthase [Plasmodium cynomolgi strain B]
Length = 340
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 112/295 (37%), Positives = 175/295 (59%), Gaps = 3/295 (1%)
Query: 139 QRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM 198
++T + ++G P++ILAPMVD SEL +RLL R Y HL +TPM+ A F+ +K R+
Sbjct: 16 EKTFWEQIGKPKYILAPMVDLSELAFRLLCRNYNCHLTFTPMLHAKNFVEHEKYRKSYFQ 75
Query: 199 STPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL 258
S +D P+I QFCGN SK L A + + + +D+N+GCPQ +AK+G+YGA+L
Sbjct: 76 SCEKDEPVIAQFCGNSSKILLNAIEYIKNEVNAVDLNLGCPQQIAKKGNYGAFLLHKHDE 135
Query: 259 LTNLVSSLRQAVQVPVSCKIR-IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
+ NLVS + +P++CKIR I QD KT+ L+ +++ VHGRT +++G+N
Sbjct: 136 VVNLVSDITNNCSIPITCKIRKIDQDYQKTLNLCYDLQSRNVKMITVHGRTKEEKGVNIK 195
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
+E I +++ L IP+IANG+I+ D++ CL T VM AE L P F+ Q
Sbjct: 196 QCDYEIIKIIKERLNIPIIANGSIEHFEDIQKCLNYTKADAVMCAEILLEKPYFFSNQNV 255
Query: 378 PAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKD 432
++ +EY DL QY +Y +GH+F M + + ++D+R L+ + + D
Sbjct: 256 HTVDVVNEYYDLFLQYESNTKYLKGHLFKMLYKYFQV--HTDLRDLLNNCHSLDD 308
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 44/67 (65%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
W Q+G P++ILAPMVD SEL +RLL R Y HL +TPM+ A F+ +K R+ S +
Sbjct: 20 WEQIGKPKYILAPMVDLSELAFRLLCRNYNCHLTFTPMLHAKNFVEHEKYRKSYFQSCEK 79
Query: 133 DRPLIIQ 139
D P+I Q
Sbjct: 80 DEPVIAQ 86
>gi|298715097|emb|CBJ27785.1| dihydrouridine synthase [Ectocarpus siliculosus]
Length = 450
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 124/299 (41%), Positives = 178/299 (59%), Gaps = 16/299 (5%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD--KKLRQEIL 197
R+ F ++G P++I APMV+ SE +R L RR+G L YT M+ A +F D +K R+
Sbjct: 85 RSFFEQIGRPKYIAAPMVEQSEAAFRYLVRRHGCGLAYTQMLHAEKFAPDNAEKFRRRRF 144
Query: 198 --MSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
+ EDRPLI+QFCGN+ + AA+ E CD +D+N+GCPQ +AK+G+YGAYL +
Sbjct: 145 DGVDDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPN 204
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
L ++V+++ + + VPV+ KIR + T++ AR LE AG QLL VHGRTV +
Sbjct: 205 PQLCEDIVAAMSRELSVPVTVKIRAQDRESDTLDLARRLEGAGAQLLTVHGRTVSSQKTK 264
Query: 316 TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375
G A W+ I V++ + IPV+ANG I+ AD E L +TG VM++EG L NPALF
Sbjct: 265 QGAADWDIIRKVKEVVDIPVVANGGIETGADAERLLEETGADAVMSSEGLLENPALFDSD 324
Query: 376 TRPAWEL------------ASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRL 422
P EL +EY++LV +YP + +GH+F M + LL + RL
Sbjct: 325 LIPMEELQGLEVAHRILSFTTEYMELVKRYPAPMISIKGHLFKMLYRLLECHHDLRARL 383
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 54/105 (51%), Gaps = 11/105 (10%)
Query: 39 PNPIPQECHSPAARCKGTNVVPKDCHSSTARSDAWTQLGSPRFILAPMVDASELPWRLLS 98
P+P QE H P G HS + Q+G P++I APMV+ SE +R L
Sbjct: 61 PSP-QQESHCPPEEEAGRE------HSEAEPRSFFEQIGRPKYIAAPMVEQSEAAFRYLV 113
Query: 99 RRYGSHLCYTPMVSAHQFIAD--KKLRQEIL--MSTPEDRPLIIQ 139
RR+G L YT M+ A +F D +K R+ + EDRPLI+Q
Sbjct: 114 RRHGCGLAYTQMLHAEKFAPDNAEKFRRRRFDGVDDEEDRPLIVQ 158
>gi|221060526|ref|XP_002260908.1| tRNA-dihydrouridine synthase [Plasmodium knowlesi strain H]
gi|193810982|emb|CAQ42880.1| tRNA-dihydrouridine synthase, putative [Plasmodium knowlesi strain
H]
Length = 340
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 115/306 (37%), Positives = 180/306 (58%), Gaps = 3/306 (0%)
Query: 139 QRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM 198
++T + ++G P+ +LAPMVD SEL +RLL R Y HL +TPM+ A F+ +K R+
Sbjct: 16 EKTFWEQIGKPKHVLAPMVDLSELAFRLLCRNYNCHLAFTPMLHAKNFVEHEKYRKGYFQ 75
Query: 199 STPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL 258
S +D P+I QFCGN+SK + A + + + +D+N+GCPQ +AK+G+YGA+L
Sbjct: 76 SCKKDEPVIAQFCGNNSKIILSAIEYIKNDVNAVDLNLGCPQQIAKKGNYGAFLLHKHDE 135
Query: 259 LTNLVSSLRQAVQVPVSCKIR-IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
+ NLVS + +P++CKIR I QD KT+ L+ +++ VHGRT +++G+N
Sbjct: 136 VVNLVSDITNNCNIPITCKIRKIDQDYQKTLNLCYDLQSRNVKMITVHGRTKEEKGVNIK 195
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
+E I +++ L IP+IANG+I+ DV+ CL T VM AE L P F+ Q
Sbjct: 196 ECDYEIIKIIKERLNIPIIANGSIEHFEDVQKCLNYTKADAVMCAEILLEKPYFFSNQNV 255
Query: 378 PAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAV 437
A ++ +EY DL QY +Y +GH+F M + + ++D+R L+ + + D
Sbjct: 256 HAVDIVNEYYDLFLQYESNPKYLKGHLFKMLYKYFQV--HTDLRDLLNNCHSLDDYVNFR 313
Query: 438 DMLRER 443
+L ER
Sbjct: 314 SILNER 319
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 43/67 (64%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
W Q+G P+ +LAPMVD SEL +RLL R Y HL +TPM+ A F+ +K R+ S +
Sbjct: 20 WEQIGKPKHVLAPMVDLSELAFRLLCRNYNCHLAFTPMLHAKNFVEHEKYRKGYFQSCKK 79
Query: 133 DRPLIIQ 139
D P+I Q
Sbjct: 80 DEPVIAQ 86
>gi|156102342|ref|XP_001616864.1| tRNA-dihydrouridine synthase [Plasmodium vivax Sal-1]
gi|148805738|gb|EDL47137.1| tRNA-dihydrouridine synthase, putative [Plasmodium vivax]
Length = 340
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 112/306 (36%), Positives = 178/306 (58%), Gaps = 3/306 (0%)
Query: 139 QRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM 198
++T + ++G P+ ILAPMVD SEL +RLL R Y HL +TPM+ A F+ +K R+
Sbjct: 16 EKTFWEQIGKPKHILAPMVDLSELAFRLLCRNYNCHLTFTPMLHAKNFVEHEKYRKSYFQ 75
Query: 199 STPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL 258
S +D P+I QFCGN+SK + A + + + +D+N+GCPQ +AK+G+YGA+L
Sbjct: 76 SCEKDEPVIAQFCGNNSKIILNAIEYIKNEVNAVDLNLGCPQQIAKKGNYGAFLLQKHDE 135
Query: 259 LTNLVSSLRQAVQVPVSCKIR-IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
+ NLVS + +P++CKIR I QD KT+ L+ +++ VHGRT +++G N
Sbjct: 136 VVNLVSDITNNCNIPITCKIRKIDQDYQKTLNLCYDLQSRNVKMITVHGRTKEEKGTNIK 195
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
+E I +++ L IP+IANG+I+ D++ CL T VM AE L P F+ Q
Sbjct: 196 QCDYEIIKIIKERLNIPIIANGSIEHFEDIQKCLNYTKADAVMCAEILLEKPYFFSNQNV 255
Query: 378 PAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAV 437
++ +EY DL QY +Y +GH+F M + + ++D+R ++ + + D
Sbjct: 256 HTVDVVNEYYDLFLQYESNTKYLKGHLFKMLYKYFQV--HTDLRDMLNNCHSLDDYVNFR 313
Query: 438 DMLRER 443
+L E+
Sbjct: 314 SILNEK 319
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 43/67 (64%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
W Q+G P+ ILAPMVD SEL +RLL R Y HL +TPM+ A F+ +K R+ S +
Sbjct: 20 WEQIGKPKHILAPMVDLSELAFRLLCRNYNCHLTFTPMLHAKNFVEHEKYRKSYFQSCEK 79
Query: 133 DRPLIIQ 139
D P+I Q
Sbjct: 80 DEPVIAQ 86
>gi|124808213|ref|XP_001348259.1| tRNA-dihydrouridine synthase, putative [Plasmodium falciparum 3D7]
gi|23497150|gb|AAN36698.1| tRNA-dihydrouridine synthase, putative [Plasmodium falciparum 3D7]
Length = 340
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 112/306 (36%), Positives = 179/306 (58%), Gaps = 3/306 (0%)
Query: 139 QRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM 198
+++ + LG P++I APMVD SELP+RLL R+Y L +TPM+ + F+ +K R+
Sbjct: 16 EKSFWESLGKPKYISAPMVDLSELPFRLLCRKYNCDLTFTPMLHSKNFVEHEKYRKGYFK 75
Query: 199 STPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL 258
S D+P+I QFCGNDSK L EA + + +DIN+GCPQ +AK+G+YGA+L
Sbjct: 76 SCDMDKPVIAQFCGNDSKILLEAINFIKDDVNAVDINLGCPQQIAKKGNYGAFLLHKHDE 135
Query: 259 LTNLVSSLRQAVQVPVSCKIR-IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
+ NL+S + +P++CKIR I D KT+ L+ G +++ VHGRT +++G+N
Sbjct: 136 VVNLISDITNNCVIPITCKIRKIDNDYQKTLNLCYDLQSRGIKMITVHGRTKEEKGINIK 195
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
+E I +++ L IP+IANG+I+ D++ CL T VM AE L P F+ +
Sbjct: 196 QCDYEIIRIIKERLNIPIIANGSIEHFEDIKKCLNYTKADAVMCAEILLEKPYFFSNKNI 255
Query: 378 PAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAV 437
A + +EY +L +Y +Y +GH+F + + ++D+R L+ + + D
Sbjct: 256 DAVNIVNEYFELYLKYESNTKYLKGHLFKFLYKYFQV--HTDLRDLLNNCHTLNDYINFK 313
Query: 438 DMLRER 443
++L ER
Sbjct: 314 NVLNER 319
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
Query: 62 DCHSSTARSDA--WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD 119
DC+ + W LG P++I APMVD SELP+RLL R+Y L +TPM+ + F+
Sbjct: 7 DCYVEKKEYEKSFWESLGKPKYISAPMVDLSELPFRLLCRKYNCDLTFTPMLHSKNFVEH 66
Query: 120 KKLRQEILMSTPEDRPLIIQ 139
+K R+ S D+P+I Q
Sbjct: 67 EKYRKGYFKSCDMDKPVIAQ 86
>gi|429328565|gb|AFZ80325.1| hypothetical protein BEWA_031780 [Babesia equi]
Length = 354
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 124/319 (38%), Positives = 184/319 (57%), Gaps = 17/319 (5%)
Query: 141 TIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 200
+ + LG+PR+++APMVD SELP+RLL RRY +HL YTPM+ A F ++K R+ ++
Sbjct: 9 SFWESLGNPRYVVAPMVDQSELPFRLLCRRYSAHLTYTPMLHARIFSENEKYRKTHFQTS 68
Query: 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
+DRPLI QFCGND + L AA++ + IDIN GCPQ +A++G YGAYL D ++T
Sbjct: 69 EDDRPLIAQFCGNDPQTLVNAARIIKDDVSAIDINCGCPQGIARKGKYGAYLLDFPNVIT 128
Query: 261 NLVSSLRQAVQVPVSCKIRIY--QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL 318
++V ++ V + V+CKIR+ + + T+ LE +GC+ L VHGR ++G+N
Sbjct: 129 SIVQTVTAQVDINVTCKIRLVEKESLQSTLNLCYALEASGCKALTVHGRDKTEKGVNISD 188
Query: 319 ASWEHITAVRKALTIP-----------VIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367
+WE I ++ + IP VIANG I+ L DV+ CL TG VM++E L
Sbjct: 189 CNWEAIKIIKSRVGIPGNAPSILKMSVVIANGGIESLDDVKRCLEYTGADAVMSSEAILE 248
Query: 368 NPALFTGQTRPAWELASEYLDLVAQYPV-RLQYARGHVFNMCHHLLTLPENSDVRLLVGK 426
P LFTG+ + EYL ++ P RL + H F M H L + + + R ++G+
Sbjct: 249 KPYLFTGREYNNLSIFKEYLSILKGCPEQRLSSVKSHAFKMLHKYLQV--HHETREVIGR 306
Query: 427 TNHIKDLRKAVDMLRERFI 445
I+ V L ER +
Sbjct: 307 AGSIEAFDGIVQDL-ERVV 324
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 50/70 (71%)
Query: 70 SDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
S W LG+PR+++APMVD SELP+RLL RRY +HL YTPM+ A F ++K R+ +
Sbjct: 8 SSFWESLGNPRYVVAPMVDQSELPFRLLCRRYSAHLTYTPMLHARIFSENEKYRKTHFQT 67
Query: 130 TPEDRPLIIQ 139
+ +DRPLI Q
Sbjct: 68 SEDDRPLIAQ 77
>gi|322702122|gb|EFY93870.1| dihydrouridine synthase family protein, putative [Metarhizium
acridum CQMa 102]
Length = 543
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 166/268 (61%), Gaps = 22/268 (8%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADKKLR 193
R + +GSP++I+APMVD SE WR+L+R + L YTPM A F ++K R
Sbjct: 25 REFYESIGSPKYIVAPMVDQSEFAWRMLTRSFLTDEEKKKMLAYTPMFHARLFSQERKYR 84
Query: 194 QEILMST-PE------------DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQ 240
+ ST P+ DRPL +QFC ND + L AAK P+CD +D+N+GCPQ
Sbjct: 85 KTHFQSTKPDSQEPWLDGNPSIDRPLFVQFCANDPEALLSAAKQVSPYCDAVDLNLGCPQ 144
Query: 241 MVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQ 300
+A++GHYGA+LQ+D L+ L+++L + + +PV+ KIRI +D KT+EYA+ + RAG
Sbjct: 145 GIARKGHYGAFLQEDQDLIFRLINTLHKELSIPVTAKIRILEDKEKTLEYAQNVLRAGAS 204
Query: 301 LLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAG 358
+L VHGR +Q+G TG+A W+ + +R +L + ANGNI D++ CLA TG G
Sbjct: 205 ILTVHGRRREQKGHLTGVADWKVLRFLRDSLPPETVIFANGNILQGGDIDECLAATGADG 264
Query: 359 VMTAEGNLYNPALFTGQTRPAWELASEY 386
VM+AEGNL +PALF + P E EY
Sbjct: 265 VMSAEGNLSDPALFA-KAPPVGEEGREY 291
>gi|449295999|gb|EMC92019.1| hypothetical protein BAUCODRAFT_77848 [Baudoinia compniacensis UAMH
10762]
Length = 510
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 164/268 (61%), Gaps = 20/268 (7%)
Query: 134 RPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFI 187
+P + R + LGSP+ I+APMVD SE WRLL+R + S LCY+PM+ A F
Sbjct: 5 KPKLHGRAFYESLGSPKQIVAPMVDQSEFAWRLLTRSFLPPDLRRSILCYSPMLHAKLFA 64
Query: 188 ADKKLRQEI-----------LMSTPE-DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDIN 235
K R L P+ DRPL +QFC ND + L EAA+ + HCD +D+N
Sbjct: 65 DAPKYRASHFQPLKDDDSPHLDGNPKIDRPLFVQFCANDPEVLLEAARHVQDHCDAVDLN 124
Query: 236 IGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLE 295
+GCPQ +AKRGHYGA+LQ+DW + L+ +L + + +PV+ K+RI + +T+EYA+M+
Sbjct: 125 LGCPQGIAKRGHYGAFLQEDWGTIHKLIRTLHEGLDIPVTAKMRILETKERTLEYAKMIL 184
Query: 296 RAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQ 353
AG ++ VHGR +Q+G NTGLA W + +R++L + ANGNI DV ACL Q
Sbjct: 185 DAGASVITVHGRRREQKGHNTGLADWSVLRYLRQSLPKDTVIFANGNILQREDVAACLEQ 244
Query: 354 TGVAGVMTAEGNLYNPALFTGQTRPAWE 381
T GVM+AEGNLY+P++F P E
Sbjct: 245 TQADGVMSAEGNLYDPSIFADPPAPGEE 272
>gi|242774281|ref|XP_002478411.1| dihydrouridine synthase family protein, putative [Talaromyces
stipitatus ATCC 10500]
gi|218722030|gb|EED21448.1| dihydrouridine synthase family protein, putative [Talaromyces
stipitatus ATCC 10500]
Length = 524
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 113/268 (42%), Positives = 162/268 (60%), Gaps = 23/268 (8%)
Query: 129 STPEDRPL-IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSH------LCYTPMV 181
S E+RP + R + +GSP+FI+APMVD SE WR+L+R + + L Y+PM
Sbjct: 5 SVLENRPAKLTGREFYKSIGSPKFIVAPMVDRSEFAWRMLTRSFMAKDEPQRLLAYSPMF 64
Query: 182 SAHQFIADKKLRQE-------------ILMSTPE-DRPLIIQFCGNDSKNLTEAAKLAEP 227
A + + R + L P DRPL +QFC ND + EAA+L P
Sbjct: 65 HARLYNETEGFRAQHFQPVRRDDPNVPFLDGNPAIDRPLFVQFCANDPNDFLEAARLVAP 124
Query: 228 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKT 287
+CD +D+N+GCPQ +A++GHYGA+LQ+DW L+ L++ L + VPV+ K RI + KT
Sbjct: 125 YCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYKLINRLHTELPVPVTAKFRIQETKEKT 184
Query: 288 VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLA 345
+EYA+M+ AG ++ VHGR +Q+G NTG+A W +I +R+ L + ANGNI
Sbjct: 185 LEYAKMILSAGASIITVHGRRREQKGHNTGVADWSYIKYLRENLPPKTVIFANGNILNHG 244
Query: 346 DVEACLAQTGVAGVMTAEGNLYNPALFT 373
D+E CL TG GVM+AEGNL +P +F+
Sbjct: 245 DIEHCLEATGADGVMSAEGNLSDPTIFS 272
>gi|269860977|ref|XP_002650205.1| tRNA-dihydrouridine synthase 1 [Enterocytozoon bieneusi H348]
gi|220066379|gb|EED43863.1| tRNA-dihydrouridine synthase 1 [Enterocytozoon bieneusi H348]
Length = 309
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 185/329 (56%), Gaps = 29/329 (8%)
Query: 156 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK--LRQEILMSTPEDRPLIIQFCGN 213
MV SE +R+L RRY +CYT MV+ F +K + + DRPL+IQ CGN
Sbjct: 1 MVSFSEEAFRILVRRYAVDVCYTEMVNCKVFNQNKADPRKNRWYTTNDNDRPLVIQICGN 60
Query: 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVP 273
D + + +CD IDIN+GCPQ +AK+G+YG+YL DD+ + N++S+L + + VP
Sbjct: 61 DPSEMLATCLQIQQYCDAIDINLGCPQNIAKKGNYGSYLMDDFEKVKNIISTLAEQLTVP 120
Query: 274 VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTI 333
+ CKIR+++ + KT+ YA+M+E++GC LLAVHGRT +Q+G NTG S++HI AV+ AL+I
Sbjct: 121 IFCKIRVFESIEKTITYAKMIEKSGCSLLAVHGRTREQKGQNTGYVSFDHIRAVKNALSI 180
Query: 334 PVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQ- 392
PV++NG + D++ + TG G+M E L+ P++F +P + EYL +V
Sbjct: 181 PVVSNGGVLTHRDIKNAVEITGCDGIMIGEPILFIPSIFVDIEKPCINIFKEYLTIVNNN 240
Query: 393 -YPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFIDYHEGR 451
+ ++ +GH F + LL NH L+ +D R R ID +
Sbjct: 241 IHSATNKHIKGHAFKILKPLL---------------NHNPKLQADID--RCRTIDDY--- 280
Query: 452 KLWPPPNYPMSSNHHNLSLPPWICQPYVR 480
N+ + N ++C+P +R
Sbjct: 281 -----INFIDHALKSNSDFSNYVCKPNIR 304
>gi|212531921|ref|XP_002146117.1| dihydrouridine synthase family protein, putative [Talaromyces
marneffei ATCC 18224]
gi|210071481|gb|EEA25570.1| dihydrouridine synthase family protein, putative [Talaromyces
marneffei ATCC 18224]
Length = 526
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/270 (41%), Positives = 163/270 (60%), Gaps = 26/270 (9%)
Query: 129 STPEDRPL-IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSH------LCYTPMV 181
S PE RP + R + +GSP++I+APMV+ SE WR+L+R + + Y+PM
Sbjct: 5 SAPESRPAKLTGREFYKSIGSPKYIVAPMVERSEFAWRMLTRSFMEKDQSQRLIAYSPMF 64
Query: 182 SAHQFIADKKLRQE----------------ILMSTPE-DRPLIIQFCGNDSKNLTEAAKL 224
A + + R + L P DRPL +QFC ND + EAA+L
Sbjct: 65 HARLYKESEGHRTQCMQPIRHNDQTDTDVPYLDGNPAIDRPLFVQFCANDPDDFLEAARL 124
Query: 225 AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDV 284
A P+CD +D+N+GCPQ +A++GHYGA+LQ+DW L+ NL++ L + +PV+ K RI +
Sbjct: 125 AAPYCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYNLINKLHTELPIPVTAKFRIQETK 184
Query: 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQ 342
KT+EYA+M+ AG ++ VHGR +Q+G NTG+A W ++ +R L + ANGNI
Sbjct: 185 EKTLEYAKMILSAGASIITVHGRRREQKGHNTGVADWSYVRYLRDNLPPETVIFANGNIL 244
Query: 343 CLADVEACLAQTGVAGVMTAEGNLYNPALF 372
AD+E CL TG GVM+AEGNL +P++F
Sbjct: 245 GQADIERCLEATGADGVMSAEGNLSDPSIF 274
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSH------LCYTPMVSAHQF 116
+ +GSP++I+APMV+ SE WR+L+R + + Y+PM A +
Sbjct: 20 YKSIGSPKYIVAPMVERSEFAWRMLTRSFMEKDQSQRLIAYSPMFHARLY 69
>gi|347839539|emb|CCD54111.1| hypothetical protein [Botryotinia fuckeliana]
Length = 597
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 117/275 (42%), Positives = 162/275 (58%), Gaps = 33/275 (12%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADKKLR 193
R + +GSP+F+LAPMVD SE WR+LSR + S + Y+PM A F K R
Sbjct: 37 RAFYESIGSPKFVLAPMVDQSEFAWRMLSRSFMSPESNKSLVAYSPMFHARMFSETPKFR 96
Query: 194 -------QEILMS-------TPE-----------DRPLIIQFCGNDSKNLTEAAKLAEPH 228
+ L+S TP+ DRPL +QFC ND K L E AK P
Sbjct: 97 DAHFQPMKSSLVSQLGSSSTTPKEELFLDGNPAFDRPLFVQFCANDEKELLEGAKFVAPF 156
Query: 229 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTV 288
CD +D+N+GCPQ +A+RG YGA+LQ+D L+ L+++L + + VPV+ KIRI KT+
Sbjct: 157 CDAVDLNLGCPQGIARRGKYGAFLQEDQGLIFRLINTLHKELDVPVTAKIRILDTREKTL 216
Query: 289 EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI--ANGNIQCLAD 346
+YA+M+ AG +L VHGRT + +G TGLA+WE + +R++L V+ NGNI D
Sbjct: 217 DYAKMVISAGASILTVHGRTREMKGHKTGLANWEMLRFLRESLPKEVVLFVNGNILARED 276
Query: 347 VEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWE 381
++ CL TG GVM+AEGNLY+P +F+ P E
Sbjct: 277 IDECLKATGADGVMSAEGNLYDPTIFSDAPAPGEE 311
>gi|209882371|ref|XP_002142622.1| dihydrouridine synthase family protein [Cryptosporidium muris RN66]
gi|209558228|gb|EEA08273.1| dihydrouridine synthase family protein [Cryptosporidium muris RN66]
Length = 405
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 178/312 (57%), Gaps = 11/312 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LGSP+ +LAPMVDASEL +RLL R+YG L +TPM + F R + +D+P
Sbjct: 11 LGSPKTVLAPMVDASELAYRLLCRKYGCDLAFTPMYHSGLFSKLSGYRNTNFQTCDDDKP 70
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LI+QFCGN+ + + +A+K + GID+N GCPQ +AKRGHYGA+L ++ L+ +LVS
Sbjct: 71 LILQFCGNNPEVILQASKYIDNKVQGIDLNFGCPQNIAKRGHYGAFLLEEPELMESLVSK 130
Query: 266 LRQA-VQVPVSCKIRIY--QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
L + ++ PVSCKIR+ D+ KT+ LE+AG +L VHGRT+ +G TG WE
Sbjct: 131 LVNSDLKCPVSCKIRLVCKNDLQKTINIMYRLEQAGISMLTVHGRTLKDKGTLTGSCDWE 190
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------TGQT 376
+ +++ IP IANG I D++ C TG VM+AEG L +P LF
Sbjct: 191 SLKIMKQRCNIPFIANGGIHTFEDIQKCFDYTGADAVMSAEGILEDPWLFYRFKNNQNIN 250
Query: 377 RPA-WELASEYLDLVAQY-PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLR 434
RP+ ++L EY+D+ +Y P R H++ + H +L P + R + + D +
Sbjct: 251 RPSQFDLVGEYIDVCKKYPPPNNSIVRSHLYRIFHTILNTPGANKFRDKINVAKDLNDFK 310
Query: 435 KAVDMLRERFID 446
L FI+
Sbjct: 311 IFSQELYHFFIN 322
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 41/64 (64%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LGSP+ +LAPMVDASEL +RLL R+YG L +TPM + F R + +D+P
Sbjct: 11 LGSPKTVLAPMVDASELAYRLLCRKYGCDLAFTPMYHSGLFSKLSGYRNTNFQTCDDDKP 70
Query: 136 LIIQ 139
LI+Q
Sbjct: 71 LILQ 74
>gi|323508721|dbj|BAJ77254.1| cgd1_3440 [Cryptosporidium parvum]
Length = 407
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 182/311 (58%), Gaps = 12/311 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L SP+ +LAPMVD SEL +RL+ ++YG L Y+PM + F + R+ + ED P
Sbjct: 14 LKSPKTVLAPMVDGSELAFRLICKKYGCDLGYSPMYHSGLFSKLQGYRETNFQTCEEDDP 73
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
+I+QFCGND + L +A+K + GIDIN GCPQ +AKRG+YGA+L + L+ ++S+
Sbjct: 74 MIVQFCGNDPETLVKASKFIDDKVKGIDINFGCPQNIAKRGNYGAFLLSNPDLMERIIST 133
Query: 266 LRQA-VQVPVSCKIRI--YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
L ++ ++ PVSCKIRI + D+ T+ + LE AG ++AVHGRT+ RG+ TG A+WE
Sbjct: 134 LSESDLKCPVSCKIRILDHHDLQPTINLIKRLESAGACMIAVHGRTMTSRGVLTGPANWE 193
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPA--- 379
+ ++ +IP IANG I D++ CL TG VM+AEG L NP LF G P
Sbjct: 194 ALKILKSRCSIPFIANGGISNYEDIQKCLNYTGADAVMSAEGILENPWLFQGFKTPEAIN 253
Query: 380 -----WELASEYLDLVAQY-PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDL 433
+++A EYLD Y P + R H++ + H + +LP R + ++ + +
Sbjct: 254 NKPSQFQIALEYLDYCILYPPPNVGIIRTHLYRIFHTIFSLPGAHIFRDEINNSHQVHEF 313
Query: 434 RKAVDMLRERF 444
+ V L +
Sbjct: 314 QLFVQNLENFY 324
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
L SP+ +LAPMVD SEL +RL+ ++YG L Y+PM + F + R+ + ED P
Sbjct: 14 LKSPKTVLAPMVDGSELAFRLICKKYGCDLGYSPMYHSGLFSKLQGYRETNFQTCEEDDP 73
Query: 136 LIIQ 139
+I+Q
Sbjct: 74 MIVQ 77
>gi|66362388|ref|XP_628158.1| Dus1p, tRNA dihydrouridine synthase [Cryptosporidium parvum Iowa
II]
gi|46227613|gb|EAK88548.1| Dus1p, tRNA dihydrouridine synthase [Cryptosporidium parvum Iowa
II]
Length = 409
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 121/311 (38%), Positives = 182/311 (58%), Gaps = 12/311 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L SP+ +LAPMVD SEL +RL+ ++YG L Y+PM + F + R+ + ED P
Sbjct: 16 LKSPKTVLAPMVDGSELAFRLICKKYGCDLGYSPMYHSGLFSKLQGYRETNFQTCEEDDP 75
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
+I+QFCGND + L +A+K + GIDIN GCPQ +AKRG+YGA+L + L+ ++S+
Sbjct: 76 MIVQFCGNDPETLVKASKFIDDKVKGIDINFGCPQNIAKRGNYGAFLLSNPDLMERIIST 135
Query: 266 LRQA-VQVPVSCKIRI--YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
L ++ ++ PVSCKIRI + D+ T+ + LE AG ++AVHGRT+ RG+ TG A+WE
Sbjct: 136 LSESDLKCPVSCKIRILDHHDLQPTINLIKRLESAGACMIAVHGRTMTSRGVLTGPANWE 195
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPA--- 379
+ ++ +IP IANG I D++ CL TG VM+AEG L NP LF G P
Sbjct: 196 ALKILKSRCSIPFIANGGISNYEDIQKCLNYTGADAVMSAEGILENPWLFQGFKTPEAIN 255
Query: 380 -----WELASEYLDLVAQY-PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDL 433
+++A EYLD Y P + R H++ + H + +LP R + ++ + +
Sbjct: 256 NKPSQFQIALEYLDYCILYPPPNVGIIRTHLYRIFHTIFSLPGAHIFRDEINNSHQVHEF 315
Query: 434 RKAVDMLRERF 444
+ V L +
Sbjct: 316 QLFVQNLENFY 326
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 40/64 (62%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
L SP+ +LAPMVD SEL +RL+ ++YG L Y+PM + F + R+ + ED P
Sbjct: 16 LKSPKTVLAPMVDGSELAFRLICKKYGCDLGYSPMYHSGLFSKLQGYRETNFQTCEEDDP 75
Query: 136 LIIQ 139
+I+Q
Sbjct: 76 MIVQ 79
>gi|322707292|gb|EFY98871.1| dihydrouridine synthase family protein, putative [Metarhizium
anisopliae ARSEF 23]
Length = 534
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 164/268 (61%), Gaps = 22/268 (8%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADKKLR 193
R + +GSP++I+APMVD SE WR+L+R + L YTPM A F + K R
Sbjct: 16 RAFYESIGSPKYIVAPMVDQSEFAWRMLTRSFLTDEEKKKMLAYTPMFHARLFSQESKYR 75
Query: 194 QEILMST-PE------------DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQ 240
+ ST P+ DRPL +QFC ND + L AAK P+CD +D+N+GCPQ
Sbjct: 76 KAHFQSTKPDSQEPWLDGNPSIDRPLFVQFCANDPEALLSAAKQVSPYCDAVDLNLGCPQ 135
Query: 241 MVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQ 300
+A++GHYGA+LQ+D L+ L+++L + + +PV+ KIRI +D KT+ YA+ + +AG
Sbjct: 136 GIARKGHYGAFLQEDQDLIFRLINTLHKELSIPVTAKIRILEDKEKTLAYAQNVLKAGAS 195
Query: 301 LLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAG 358
+L VHGR +Q+G TG+A W+ + +R +L + ANGNI D++ CLA TG G
Sbjct: 196 ILTVHGRRREQKGHLTGVADWKTLRFLRDSLPPETVIFANGNILQGGDIDECLAATGADG 255
Query: 359 VMTAEGNLYNPALFTGQTRPAWELASEY 386
VM+AEGNL +PALF + P E EY
Sbjct: 256 VMSAEGNLSDPALFA-KAPPVGEEGREY 282
>gi|156037856|ref|XP_001586655.1| hypothetical protein SS1G_12642 [Sclerotinia sclerotiorum 1980]
gi|154698050|gb|EDN97788.1| hypothetical protein SS1G_12642 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 587
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/267 (43%), Positives = 155/267 (58%), Gaps = 33/267 (12%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADKKLR 193
R + + SP+FILAPMVD SE WR+LSR + S L YTPM+ A F K R
Sbjct: 37 RAFYESIDSPKFILAPMVDQSEFAWRMLSRSFMSPESNKSLLAYTPMLHARMFSETPKFR 96
Query: 194 QE------------------------ILMSTPE-DRPLIIQFCGNDSKNLTEAAKLAEPH 228
L P DRPL +QFC ND K L E AK P
Sbjct: 97 DAHFQPMKSSLVSQLDSSCPIPKEDIFLDGNPAFDRPLFVQFCANDEKELLEGAKYVAPF 156
Query: 229 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTV 288
CD +D+N+GCPQ +A+RG YGA+LQ+D L+ L+++L + + VPV+ KIRI + KT+
Sbjct: 157 CDAVDLNLGCPQGIARRGKYGAFLQEDQGLIYKLINTLHKELDVPVTAKIRILETREKTL 216
Query: 289 EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI--ANGNIQCLAD 346
EYA+M+ AG +L VHGRT + +G TGLA W + +R++L V+ ANGNI D
Sbjct: 217 EYAKMVVSAGASILTVHGRTREMKGHKTGLADWAVLRFLRESLPKEVVLFANGNILSRED 276
Query: 347 VEACLAQTGVAGVMTAEGNLYNPALFT 373
++ CL TG GVM+AEGNLY+P +F+
Sbjct: 277 IDECLKVTGADGVMSAEGNLYDPTIFS 303
>gi|378733917|gb|EHY60376.1| tRNA-dihydrouridine synthase 1 [Exophiala dermatitidis NIH/UT8656]
Length = 566
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 113/264 (42%), Positives = 154/264 (58%), Gaps = 28/264 (10%)
Query: 137 IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADK 190
+ R + +GSP+ I+APMVD SE WRLL+R Y S L YTPM A F +
Sbjct: 42 LTGRAFYESIGSPKMIVAPMVDRSEFAWRLLTRSYLDEERSKSLLAYTPMFHARMFSETQ 101
Query: 191 KLRQEILMSTPE--------------------DRPLIIQFCGNDSKNLTEAAKLAEPHCD 230
+ R+E T DRPL +QFC N + L +AA+ P+CD
Sbjct: 102 RFREEFFQPTRSGLASKEKSTSPPWRDGNPALDRPLFVQFCANKPEELLDAAQYVAPYCD 161
Query: 231 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEY 290
+D+N+GCPQ +AK GHYGA+LQ DW + L+++L + + VPV+ K+RI + KT+EY
Sbjct: 162 AVDLNLGCPQGIAKAGHYGAFLQKDWDTIYKLINTLHKDLSVPVTAKMRILETREKTLEY 221
Query: 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVE 348
A+M+ AG +L VHGR +Q+G TGLA W I +R L + ANGNI D++
Sbjct: 222 AKMILSAGASILTVHGRRREQKGHYTGLADWSVIRYLRDNLPPETVIFANGNILNADDID 281
Query: 349 ACLAQTGVAGVMTAEGNLYNPALF 372
ACLA TG GVM+AEGNL +P +F
Sbjct: 282 ACLAATGADGVMSAEGNLSDPTIF 305
>gi|428182144|gb|EKX51006.1| hypothetical protein GUITHDRAFT_66485 [Guillardia theta CCMP2712]
Length = 312
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 121/266 (45%), Positives = 167/266 (62%), Gaps = 20/266 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIA-DKKLRQEILMSTPEDR 204
LGSPR++ APMV+ SEL +RLL RR+G L YTPM+ A +FI+ K R ++ +DR
Sbjct: 35 LGSPRYVSAPMVNNSELAFRLLVRRHGVQLTYTPMIPAKKFISMGAKDRLALIEPHEDDR 94
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PLI+QFC ++ L EA +LA HCD ID+N+GCPQ A R HYGA L ++ L++ +V
Sbjct: 95 PLIVQFCSDEPDELLEAGRLARDHCDAIDLNLGCPQSQAARDHYGAVLMEEPELVSRMVR 154
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM--NTGLASWE 322
Q ++VPV+CKIR++ ++ +TV +A+ML+ +GC +L VHGRT RG + G +W+
Sbjct: 155 RASQGLRVPVTCKIRVFDNLERTVAFAKMLQASGCSMLTVHGRT---RGCTHHEGSCNWD 211
Query: 323 HITAVRKALTIPVIANGN-IQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ------ 375
+I V++A+ IPVIANG I+ L DV CL TG VM+A G L +P LF GQ
Sbjct: 212 YIREVKEAVDIPVIANGGMIRSLRDVRRCLEHTGADAVMSAIGLLLDPRLFGGQESGQSS 271
Query: 376 -------TRPAWELASEYLDLVAQYP 394
ELA EYL+L P
Sbjct: 272 DPPDPQPLPDPIELALEYLELAKTIP 297
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIA-DKKLRQEILMSTP 131
W LGSPR++ APMV+ SEL +RLL RR+G L YTPM+ A +FI+ K R ++
Sbjct: 32 WRSLGSPRYVSAPMVNNSELAFRLLVRRHGVQLTYTPMIPAKKFISMGAKDRLALIEPHE 91
Query: 132 EDRPLIIQ 139
+DRPLI+Q
Sbjct: 92 DDRPLIVQ 99
>gi|367050712|ref|XP_003655735.1| hypothetical protein THITE_2119764 [Thielavia terrestris NRRL 8126]
gi|347002999|gb|AEO69399.1| hypothetical protein THITE_2119764 [Thielavia terrestris NRRL 8126]
Length = 569
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 114/269 (42%), Positives = 160/269 (59%), Gaps = 21/269 (7%)
Query: 134 RPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFI 187
+P + R + +GSP++I+APMVD SE WR+LSR + S L Y+PM+ A FI
Sbjct: 27 KPKLHGRAFYESIGSPKYIVAPMVDQSEFAWRMLSRSFLPESQRSSVLAYSPMLHARIFI 86
Query: 188 ADKKLRQEILMST-PE------------DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDI 234
KK R + T P+ DRP +QFC ND + L AA++ PHCD +D+
Sbjct: 87 ESKKYRDQHFQPTKPDSDALFLDGNPAIDRPFFVQFCANDPQALLNAARIVAPHCDAVDL 146
Query: 235 NIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARML 294
N+GCPQ +A++GHYG++LQ+D L+ L+ +L + + +PV+ KIRI T++YA+ +
Sbjct: 147 NLGCPQGIARKGHYGSFLQEDQDLIHRLIKTLHENLDIPVTAKIRILDTKEATLKYAQNV 206
Query: 295 ERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLA 352
AG +L VHGR +Q+G TGLA W+ I +R L + ANGNI D+E CLA
Sbjct: 207 LSAGASILTVHGRRREQKGHLTGLADWQMIRYLRDNLPPETVLFANGNILQHEDLEKCLA 266
Query: 353 QTGVAGVMTAEGNLYNPALFTGQTRPAWE 381
TG GVM+AEGNL NP +F P E
Sbjct: 267 ATGADGVMSAEGNLSNPGIFAAPPPPGQE 295
>gi|358378951|gb|EHK16632.1| hypothetical protein TRIVIDRAFT_41234 [Trichoderma virens Gv29-8]
Length = 528
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 163/268 (60%), Gaps = 22/268 (8%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADKKLR 193
R + +GSP+FI+APMVD SE WR+L+R + L YTPM A F D+K R
Sbjct: 19 RAFYESIGSPKFIVAPMVDQSEFAWRMLTRSFLLPSEQSKLLAYTPMFHARLFSQDEKYR 78
Query: 194 ----QEILMSTPE---------DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQ 240
Q + + E DRPL +QFC ND L AA+ P+CD +D+N+GCPQ
Sbjct: 79 KAHYQAVRTGSNEPWLDGNPKIDRPLFVQFCANDPAALLSAAQHVVPYCDAVDLNLGCPQ 138
Query: 241 MVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQ 300
+A++GHYGA+LQ+D L+ L+++L + + +PV+ KIR+ + KT+EYA+M+ +AG
Sbjct: 139 GIARKGHYGAFLQEDQDLIFKLINTLHKELSIPVTAKIRVLETREKTLEYAKMVLKAGAS 198
Query: 301 LLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAG 358
+L VHGR +Q+G TG+A W+ I +R L + ANGNI D++ CL TG G
Sbjct: 199 ILTVHGRRREQKGHLTGVADWDMIRFLRDNLPPETVLFANGNILQDGDLQKCLEATGADG 258
Query: 359 VMTAEGNLYNPALFTGQTRPAWELASEY 386
+M+AEGNL +P LF G PA E + EY
Sbjct: 259 IMSAEGNLSDPGLF-GNPPPAEENSREY 285
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 19/86 (22%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADKKLR--- 123
+ +GSP+FI+APMVD SE WR+L+R + L YTPM A F D+K R
Sbjct: 22 YESIGSPKFIVAPMVDQSEFAWRMLTRSFLLPSEQSKLLAYTPMFHARLFSQDEKYRKAH 81
Query: 124 -QEILMSTPE---------DRPLIIQ 139
Q + + E DRPL +Q
Sbjct: 82 YQAVRTGSNEPWLDGNPKIDRPLFVQ 107
>gi|367027128|ref|XP_003662848.1| hypothetical protein MYCTH_2303945 [Myceliophthora thermophila ATCC
42464]
gi|347010117|gb|AEO57603.1| hypothetical protein MYCTH_2303945 [Myceliophthora thermophila ATCC
42464]
Length = 523
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 123/302 (40%), Positives = 172/302 (56%), Gaps = 39/302 (12%)
Query: 134 RPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFI 187
+P + R + +GSP++I+APMVD SE WR+LSR + S L Y+PM A F
Sbjct: 18 KPKLHGRAFYESIGSPKYIVAPMVDQSEFAWRMLSRSFLPESERSSLLAYSPMFHARLFT 77
Query: 188 ADKKLRQEILMST-PE------------DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDI 234
+K R + T P+ DRP +QFC ND + L AAKL P+CD +D+
Sbjct: 78 ESQKYRDQHFQPTKPDSNELFLDGNPAIDRPFFVQFCANDPQALLSAAKLVAPYCDAVDL 137
Query: 235 NIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARML 294
N+GCPQ +AK+G YG++LQ+D L+ L+ +L + +++PV+ KIRI + T++YA+ +
Sbjct: 138 NLGCPQNIAKKGRYGSFLQEDQELIHQLIKTLHENLEIPVTAKIRILETKEATLKYAQNV 197
Query: 295 ERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLA 352
AG +L VHGR +Q+G TGLA WE I +R L + ANGNI D+E CLA
Sbjct: 198 LSAGASILTVHGRLREQKGHLTGLADWEMIRYLRDNLPPETVLFANGNILQHEDLEKCLA 257
Query: 353 QTGVAGVMTAEGNLYNPALFT-----GQT-RPAW------------ELASEYLDLVAQYP 394
TG GVM+AEGNL NP +F GQ R W E+ YLD++ QY
Sbjct: 258 ATGADGVMSAEGNLSNPGIFAPPPPVGQEPRGYWRGKDGKGGWRVDEVFRRYLDIIHQYV 317
Query: 395 VR 396
+R
Sbjct: 318 LR 319
>gi|255956875|ref|XP_002569190.1| Pc21g22200 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590901|emb|CAP97117.1| Pc21g22200 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 536
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 109/283 (38%), Positives = 162/283 (57%), Gaps = 25/283 (8%)
Query: 124 QEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCY 177
++ P+ + + R + +GSP++++APMVD SE WR+L+R + L Y
Sbjct: 12 EQTSAGAPQPKEKLFGRKFYESIGSPKYVVAPMVDRSEFAWRMLTRSFMPPDDPKPLLAY 71
Query: 178 TPMVSAHQFIADKKLRQEILMSTPE-----------------DRPLIIQFCGNDSKNLTE 220
+PM A F + +R + T + DRPL +QFC N+ E
Sbjct: 72 SPMFHARLFGEQENVRTKHFQPTRKAIGGSKDELFLDGNPAIDRPLFVQFCTNNPDEFLE 131
Query: 221 AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI 280
AA+ PHCD +D+N+GCPQ +AK+GHYGA+LQ+DW L+ LV+ L + +PV+ K RI
Sbjct: 132 AARHVAPHCDAVDLNLGCPQGIAKKGHYGAFLQEDWDLIYRLVNRLHTELSIPVTVKFRI 191
Query: 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIAN 338
+ KT+EYA+M+ AG ++AVHGR +Q+G NTG+A W +I +R L + AN
Sbjct: 192 QETKEKTLEYAKMILSAGASIIAVHGRRREQKGHNTGIADWSYIRYLRDNLPADTVIFAN 251
Query: 339 GNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWE 381
GNI D++ CL TG VM+AEGNL +P++F+ P E
Sbjct: 252 GNILNYGDIDTCLEATGADAVMSAEGNLSDPSIFSKPPPPGAE 294
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 23/90 (25%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADKKLRQEI 126
+ +GSP++++APMVD SE WR+L+R + L Y+PM A F + +R +
Sbjct: 31 YESIGSPKYVVAPMVDRSEFAWRMLTRSFMPPDDPKPLLAYSPMFHARLFGEQENVRTKH 90
Query: 127 LMSTPE-----------------DRPLIIQ 139
T + DRPL +Q
Sbjct: 91 FQPTRKAIGGSKDELFLDGNPAIDRPLFVQ 120
>gi|121700723|ref|XP_001268626.1| dihydrouridine synthase family protein, putative [Aspergillus
clavatus NRRL 1]
gi|119396769|gb|EAW07200.1| dihydrouridine synthase family protein, putative [Aspergillus
clavatus NRRL 1]
Length = 538
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 116/305 (38%), Positives = 168/305 (55%), Gaps = 43/305 (14%)
Query: 132 EDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQ 185
E R + R + +GSP++I+APMVD SE WR+L+R + L Y+PM A
Sbjct: 26 EARKKLFGREFYESIGSPKYIVAPMVDRSEFAWRMLTRSFMPADDPKPLLSYSPMYHARL 85
Query: 186 FIADKKLRQEILMSTPE-----------------DRPLIIQFCGNDSKNLTEAAKLAEPH 228
F +R + T DRPL +QFC ND + EAA+ P+
Sbjct: 86 FREQPNVRWQHFQPTRAGINKNDNSSYLDGNPAIDRPLFVQFCANDPDDFIEAARHVAPY 145
Query: 229 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTV 288
CD +D+N+GCPQ +A++GHYGA+LQ+DW L+ L++ L + + +PV+ K RI + KT+
Sbjct: 146 CDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYKLINRLHKELSIPVTAKFRIQESKEKTL 205
Query: 289 EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLAD 346
EYA+M+ AG ++ +HGRT +Q+G NTGLA W +I +R L + ANGN D
Sbjct: 206 EYAKMILSAGASIITLHGRTREQKGHNTGLADWSYIRYLRDNLPPETVIFANGNNLNHDD 265
Query: 347 VEACLAQTGVAGVMTAEGNLYNPALFTG------QTRPAWE------------LASEYLD 388
+E CL TG GVM+AEGNL +PA+F+ TR W + YLD
Sbjct: 266 LERCLEATGADGVMSAEGNLSDPAIFSKPPPVGTHTREYWRGKDGKGGYRIDAIVRRYLD 325
Query: 389 LVAQY 393
++ +Y
Sbjct: 326 IIYKY 330
>gi|119494427|ref|XP_001264109.1| dihydrouridine synthase family protein, putative [Neosartorya
fischeri NRRL 181]
gi|119412271|gb|EAW22212.1| dihydrouridine synthase family protein, putative [Neosartorya
fischeri NRRL 181]
Length = 527
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 117/308 (37%), Positives = 170/308 (55%), Gaps = 43/308 (13%)
Query: 129 STPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVS 182
+T E R + R + +GSP++I+APMVD SE WR+L+R + L Y+PM
Sbjct: 17 ATAEPRKKLFGREFYESIGSPKYIVAPMVDRSEFAWRMLTRSFMPPDDPKPILAYSPMYH 76
Query: 183 AHQFIADKKLRQEILMSTPE-----------------DRPLIIQFCGNDSKNLTEAAKLA 225
A F +R + T DRPL +QFC ND + EAA+
Sbjct: 77 ARLFREQANVRWQHFQPTRAGLDKNDNSLYLDGNPAFDRPLFVQFCANDPDDFLEAARHV 136
Query: 226 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN 285
P+CD +D+N+GCPQ +A++GHYGA+LQ+DW L+ L++ L + + +PV+ K RI +
Sbjct: 137 APYCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYKLINRLHKELPIPVTAKFRIQESKE 196
Query: 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQC 343
KT+EYA+M+ AG ++ +HGRT +Q+G NTGLA W +I +R L + ANGN
Sbjct: 197 KTLEYAKMILSAGASIITLHGRTREQKGHNTGLADWSYIRYLRDNLPPETVIFANGNNLN 256
Query: 344 LADVEACLAQTGVAGVMTAEGNLYNPALFT------GQTRPAWE------------LASE 385
D+E CL TG GVM+AEGNL +PA+F+ + R W +
Sbjct: 257 HDDLERCLEATGADGVMSAEGNLSDPAIFSKPPPVGSEGREYWRGRNGKGGYRIDAIFRR 316
Query: 386 YLDLVAQY 393
YLD++ QY
Sbjct: 317 YLDIIYQY 324
>gi|317025631|ref|XP_001389487.2| dihydrouridine synthase family protein [Aspergillus niger CBS
513.88]
gi|350638512|gb|EHA26868.1| hypothetical protein ASPNIDRAFT_196147 [Aspergillus niger ATCC
1015]
Length = 542
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 139/466 (29%), Positives = 224/466 (48%), Gaps = 111/466 (23%)
Query: 127 LMSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSH------LCYTPM 180
+ + E R ++ R + +GSP++I+APMVD SE WR+L+R + + L Y+PM
Sbjct: 21 IAAAAEPRKKLLGRQFYESIGSPKYIIAPMVDRSEFAWRMLTRSFMTPEDQKKVLAYSPM 80
Query: 181 VSAHQFIADKKLRQE-----------------ILMSTPE-DRPLIIQFCGNDSKNLTEAA 222
A F +R + L P DRPL +QFC ND + EAA
Sbjct: 81 YHARLFREQANVRVQHFHPTRAAAGKGEDESPYLDGNPSFDRPLFVQFCANDPDDFLEAA 140
Query: 223 KLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282
+ P+CD +D+N+GCPQ +AKRGHYGA+LQ+DW L+ L++ L + +PV+ K RI +
Sbjct: 141 RHVAPYCDAVDLNLGCPQGIAKRGHYGAFLQEDWDLIYRLINRLHNELSIPVTAKFRIQE 200
Query: 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGN 340
KT+EYA+M+ AG ++ VHGR +Q+G NTGLA W +I +R L + ANGN
Sbjct: 201 TKEKTLEYAKMILSAGANIITVHGRRREQKGHNTGLADWSYIRYLRDNLPPETVIFANGN 260
Query: 341 IQCLADVEACLAQTGVAGVMTAEGNLYNPALFT------GQTRPAWE------------L 382
D++ CL +TG GVM+AEGNL +P++F+ + R W +
Sbjct: 261 NLNYEDLDRCLEETGADGVMSAEGNLSDPSIFSKPPPVGSEGREYWRGRDGKGGYRIDAM 320
Query: 383 ASEYLDLVAQY------PVR---------------------------------------- 396
YLD++ +Y P R
Sbjct: 321 LRRYLDIIYKYVLEQPVPERKPLWLPSDAVEEEFEQTTETTEEAEDGPPKKKQKREKSKR 380
Query: 397 -----LQYARGHVFNMCHHLLTLPENSDVRLLVGKT---------NHIKDLRKAVDMLRE 442
L +GH+F + ++++ +++VR + ++ N + + +A+ +
Sbjct: 381 AASPSLGVMQGHLFQLLRPMVSV--HTNVRDALARSRPGDMPAFENVLALVEQAIKKGLK 438
Query: 443 RFIDYHEGRKLWPPPNYPMSSNHHNLS---LPPWICQPYVRPTPEQ 485
+ + E + PN ++ + ++ P WICQP++RP PE+
Sbjct: 439 EYEQFPE--RFEKDPNQELTGSKATIAEYGRPWWICQPHIRPLPEE 482
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSH------LCYTPMVSAHQFIADKKLR 123
+ +GSP++I+APMVD SE WR+L+R + + L Y+PM A F +R
Sbjct: 37 YESIGSPKYIIAPMVDRSEFAWRMLTRSFMTPEDQKKVLAYSPMYHARLFREQANVR 93
>gi|169767132|ref|XP_001818037.1| dihydrouridine synthase family protein [Aspergillus oryzae RIB40]
gi|83765892|dbj|BAE56035.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 536
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 140/460 (30%), Positives = 225/460 (48%), Gaps = 107/460 (23%)
Query: 129 STPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVS 182
+TP+ + ++ R + +GSP++I+APMVD SE WR+L+R + L Y+PM
Sbjct: 25 TTPKTK--LLGREFYKSIGSPKYIVAPMVDRSEFAWRMLTRSFMPPDDPKPMLAYSPMYH 82
Query: 183 AHQFIADKKLRQE---------------ILMSTPE-DRPLIIQFCGNDSKNLTEAAKLAE 226
A F ++R + L P DRPL +QFC N+ + EAA+
Sbjct: 83 ARLFREQLQMRLQHFHPTRAAIKGDDTPYLDGNPAIDRPLFVQFCANNPDDFLEAARHVA 142
Query: 227 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNK 286
P+CD +D+N+GCPQ +A+RGHYGA+LQ+DW L+ L++ L + VPV+ K RI + K
Sbjct: 143 PYCDAVDLNLGCPQGIARRGHYGAFLQEDWDLIYKLINKLHTELDVPVTAKFRIQETKEK 202
Query: 287 TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCL 344
T+EYA+M+ AG ++ +HGRT +Q+G NTG+A W +I +R L + ANGNI
Sbjct: 203 TLEYAKMILSAGASIITLHGRTREQKGHNTGVADWSYIRYLRDNLPPETVIFANGNILNY 262
Query: 345 ADVEACLAQTGVAGVMTAEGNLYNPALFT------GQTRPAWE------------LASEY 386
D+E CL +TG GVM+AEGNL +P++F+ + R W + Y
Sbjct: 263 DDLERCLEETGADGVMSAEGNLSDPSVFSKPPPVGSEGREYWRGRDGKGGYRIDAVFRRY 322
Query: 387 LDLVAQY------PVR-------------------------------------------- 396
LD++ +Y P R
Sbjct: 323 LDIIYKYVLEQPVPERKPLYLPSDPEEPEQFIEPTAEEAEEEGPPKKKQKRDKTKRPLSP 382
Query: 397 -LQYARGHVFNMCHHLLTLPENSDVR--LLVGKTNHIKDLRKAVDM----LRERFIDYHE 449
L +GH+F + ++ +++DVR L + + A+ + ++E +Y +
Sbjct: 383 SLGVMQGHLFQLLRPMVA--KHTDVRDALARSRPGDMAAFEHALALTERAIKEGLKEYEQ 440
Query: 450 -GRKLWPPPNYPMSSNHHNLS---LPPWICQPYVRPTPEQ 485
+ PN ++ + ++ P W+CQP++RP PE+
Sbjct: 441 FPERFETSPNQELTGSKATIAEYGRPWWVCQPHIRPLPEE 480
>gi|358370777|dbj|GAA87387.1| tRNA-dihydrouridine synthase 1 [Aspergillus kawachii IFO 4308]
Length = 542
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 110/273 (40%), Positives = 161/273 (58%), Gaps = 26/273 (9%)
Query: 127 LMSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSH------LCYTPM 180
+ + E R ++ R + +GSP++I+APMVD SE WR+L+R + + L Y+PM
Sbjct: 21 VAAAAEPRKKLLGRQFYESIGSPKYIIAPMVDRSEFAWRMLTRSFMTPEDQKKVLAYSPM 80
Query: 181 VSAHQFIADKKLRQE-----------------ILMSTPE-DRPLIIQFCGNDSKNLTEAA 222
A F +R + L P DRPL +QFC ND + EAA
Sbjct: 81 YHARLFREQANVRVQHFHPTRAAAGKGEDESPYLDGNPSFDRPLFVQFCANDPDDFLEAA 140
Query: 223 KLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282
+ P+CD +D+N+GCPQ +AKRGHYGA+LQ+DW L+ L++ L + +PV+ K RI +
Sbjct: 141 RHVAPYCDAVDLNLGCPQGIAKRGHYGAFLQEDWDLIYKLINRLHNELSIPVTAKFRIQE 200
Query: 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGN 340
KT+EYA+M+ AG ++ VHGR +Q+G NTGLA W +I +R L + ANGN
Sbjct: 201 TKEKTLEYAKMILSAGANIITVHGRRREQKGHNTGLADWSYIRYLRDNLPPETVIFANGN 260
Query: 341 IQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
D++ CL +TG GVM+AEGNL +P++F+
Sbjct: 261 NLNYEDLDRCLEETGADGVMSAEGNLSDPSIFS 293
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSH------LCYTPMVSAHQFIADKKLR 123
+ +GSP++I+APMVD SE WR+L+R + + L Y+PM A F +R
Sbjct: 37 YESIGSPKYIIAPMVDRSEFAWRMLTRSFMTPEDQKKVLAYSPMYHARLFREQANVR 93
>gi|238483959|ref|XP_002373218.1| dihydrouridine synthase family protein, putative [Aspergillus
flavus NRRL3357]
gi|220701268|gb|EED57606.1| dihydrouridine synthase family protein, putative [Aspergillus
flavus NRRL3357]
Length = 474
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 110/269 (40%), Positives = 164/269 (60%), Gaps = 26/269 (9%)
Query: 129 STPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVS 182
+TP+ + ++ R + +GSP++I+APMVD SE WR+L+R + L Y+PM
Sbjct: 25 TTPKTK--LLGREFYKSIGSPKYIVAPMVDRSEFAWRMLTRSFMPPDDPKPMLAYSPMYH 82
Query: 183 AHQFIADKKLRQE---------------ILMSTPE-DRPLIIQFCGNDSKNLTEAAKLAE 226
A F ++R + L P DRPL +QFC N+ + EAA+
Sbjct: 83 ARLFREQLQMRLQHFHPTRAAIKGDDTPYLDGNPAIDRPLFVQFCANNPDDFLEAARHVA 142
Query: 227 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNK 286
P+CD +D+N+GCPQ +A+RGHYGA+LQ+DW L+ L++ L + VPV+ K RI + K
Sbjct: 143 PYCDAVDLNLGCPQGIARRGHYGAFLQEDWDLIYKLINKLHTELDVPVTAKFRIQETKEK 202
Query: 287 TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCL 344
T+EYA+M+ AG ++ +HGRT +Q+G NTG+A W +I +R L + ANGNI
Sbjct: 203 TLEYAKMILSAGASIITLHGRTREQKGHNTGVADWSYIRYLRDNLPPETVIFANGNILNY 262
Query: 345 ADVEACLAQTGVAGVMTAEGNLYNPALFT 373
D+E CL +TG GVM+AEGNL +P++F+
Sbjct: 263 DDLERCLEETGADGVMSAEGNLSDPSVFS 291
>gi|391873998|gb|EIT82953.1| tRNA-dihydrouridine synthase [Aspergillus oryzae 3.042]
Length = 536
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 139/460 (30%), Positives = 224/460 (48%), Gaps = 107/460 (23%)
Query: 129 STPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVS 182
+TP+ + ++ R + +GSP++I+APMVD SE WR+L+R + L Y+PM
Sbjct: 25 TTPKTK--LLGREFYKSIGSPKYIVAPMVDRSEFAWRMLTRSFMPPDDPKPMLAYSPMYH 82
Query: 183 AHQFIADKKLRQE---------------ILMSTPE-DRPLIIQFCGNDSKNLTEAAKLAE 226
A F ++R + L P DRPL +QFC N+ + EAA+
Sbjct: 83 ARLFREQLQMRLQHFHPTRAAIKGDDTPYLDGNPAIDRPLFVQFCANNPDDFLEAARHVA 142
Query: 227 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNK 286
P+CD +D+N+GCPQ +A+RGHYGA+LQ+DW L+ L++ L + VPV+ K RI + K
Sbjct: 143 PYCDAVDLNLGCPQGIARRGHYGAFLQEDWDLIYKLINKLHTELDVPVTAKFRIQETKEK 202
Query: 287 TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCL 344
T+EYA+M+ AG ++ +HGRT +Q+G NTG+A W +I +R L + ANGNI
Sbjct: 203 TLEYAKMILSAGASIITLHGRTREQKGHNTGVADWSYIRYLRDNLPPETVIFANGNILNY 262
Query: 345 ADVEACLAQTGVAGVMTAEGNLYNPALFT------GQTRPAWE------------LASEY 386
D+E C +TG GVM+AEGNL +P++F+ + R W + Y
Sbjct: 263 DDLERCFEETGADGVMSAEGNLSDPSVFSKPPPVGSEGREYWRGRDGKGGYRIDAVFRRY 322
Query: 387 LDLVAQY------PVR-------------------------------------------- 396
LD++ +Y P R
Sbjct: 323 LDIIYKYVLEQPVPERKPLYLPSDPEEPEQFIEPTAEEAEEEGPPKKKQKRDKTKRPLSP 382
Query: 397 -LQYARGHVFNMCHHLLTLPENSDVR--LLVGKTNHIKDLRKAVDM----LRERFIDYHE 449
L +GH+F + ++ +++DVR L + + A+ + ++E +Y +
Sbjct: 383 SLGVMQGHLFQLLRPMVA--KHTDVRDALARSRPGDMAAFEHALALTERAIKEGLKEYEQ 440
Query: 450 -GRKLWPPPNYPMSSNHHNLS---LPPWICQPYVRPTPEQ 485
+ PN ++ + ++ P W+CQP++RP PE+
Sbjct: 441 FPERFETSPNQELTGSKATIAEYGRPWWVCQPHIRPLPEE 480
>gi|46125679|ref|XP_387393.1| hypothetical protein FG07217.1 [Gibberella zeae PH-1]
Length = 510
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 117/276 (42%), Positives = 163/276 (59%), Gaps = 23/276 (8%)
Query: 133 DRPLIIQ-RTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQ 185
+RP ++ R + +GSP+FI+APMVD SE WR+L+R + S L YTPM+ A
Sbjct: 11 ERPTKLEGRAFYESIGSPKFIVAPMVDQSEFAWRMLTRSFISPTEQKSLLAYTPMLHARL 70
Query: 186 FIADKKLRQEILMSTPED-------------RPLIIQFCGNDSKNLTEAAKLAEPHCDGI 232
F D K R+ + D RPL +QFC ND L AAK P+CD +
Sbjct: 71 FSQDDKYRKAHFQAVKTDGETPWLDGNPSIDRPLFVQFCANDPDALLSAAKQVAPYCDAV 130
Query: 233 DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYAR 292
D+N+GCPQ +A++G YGA+LQ+D L+ L++ L + + VPV+ KIRI +T+ YA+
Sbjct: 131 DLNLGCPQGIARKGKYGAFLQEDQDLIFRLINILHKELPVPVTAKIRILDTKEETLAYAQ 190
Query: 293 MLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEAC 350
+ +AG +L VHGR +Q+G TGLA W+ I +R +L + ANGNI D+E C
Sbjct: 191 NVLKAGASILTVHGRKREQKGHLTGLAEWQMIRFLRDSLPKETVIFANGNILQEGDIEKC 250
Query: 351 LAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEY 386
L TG GVM+AEGNL +PA+FT + P E EY
Sbjct: 251 LEATGADGVMSAEGNLSDPAIFT-KPPPVGEEGREY 285
>gi|440290437|gb|ELP83849.1| tRNA-dihydrouridine synthase, putative [Entamoeba invadens IP1]
Length = 357
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 123/317 (38%), Positives = 174/317 (54%), Gaps = 23/317 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS-TPEDR 204
L SP ILAPMVD S+ +R ++G LCYTPMV + F K RQE++ + P +R
Sbjct: 19 LKSPHVILAPMVDGSDTSFRSFVHKHGVDLCYTPMVLSKLFNESKTYRQEVIKTLDPRER 78
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PL+IQ G+D + AAKL +CD IDIN+GCPQ +A++G YGAYL D +V
Sbjct: 79 PLVIQIVGHDPDEMGRAAKLLSKYCDVIDINLGCPQKIAQKGQYGAYLSQDLSQTEKVVK 138
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
++ +AV+VPV CKIR+ +D KT++ ML G L VHGRT+D++ A WE I
Sbjct: 139 AVMKAVEVPVYCKIRVSEDHEKTMKLVDMLVACGIWGLCVHGRTIDEKQSGVYHARWEII 198
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELAS 384
+ ++K + IPVIANG I ++D++ C T G M G L NP L G+ + LAS
Sbjct: 199 SDIKKRVAIPVIANGGIATMSDIQKCKEITNADGFMIGMGLLLNPGLCEGRLDDNFLLAS 258
Query: 385 EYLDLVAQYP----VRLQYARGHVFNMCHHLLTLPENS------------DVRLLVGKTN 428
EYL L + V+ +GH+ M + + PE D++ +GK
Sbjct: 259 EYLSLAEELSLTCLVKFWEVKGHIIKMLIYRIR-PEKDIVKEIGLVTTYEDIKTWMGKAE 317
Query: 429 HI-----KDLRKAVDML 440
H+ D+ + DML
Sbjct: 318 HLFRKRSDDISHSQDML 334
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS-TPEDR 134
L SP ILAPMVD S+ +R ++G LCYTPMV + F K RQE++ + P +R
Sbjct: 19 LKSPHVILAPMVDGSDTSFRSFVHKHGVDLCYTPMVLSKLFNESKTYRQEVIKTLDPRER 78
Query: 135 PLIIQ 139
PL+IQ
Sbjct: 79 PLVIQ 83
>gi|403172809|ref|XP_003331954.2| hypothetical protein PGTG_13906 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375170007|gb|EFP87535.2| hypothetical protein PGTG_13906 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1600
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 117/255 (45%), Positives = 160/255 (62%), Gaps = 28/255 (10%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEI----LMSTP 201
LGSPR+++APMVD SEL WR+LSR YG+ LCYTPM+ A + D++++ + L S
Sbjct: 82 LGSPRYVVAPMVDGSELAWRILSRYYGAELCYTPMIHAGLYSDDRQIKYRVEQLDLDSHE 141
Query: 202 E-----DRPLIIQFCGNDSKNLTEAAKLAEPH----------------CDGIDINIGCPQ 240
E DRPLI+QFC N L +AA L H D +D+N+GCPQ
Sbjct: 142 EGSEGLDRPLIVQFCANHPDTLLKAANLVINHPSSSSDFLAGNMDRLPVDAVDLNLGCPQ 201
Query: 241 MVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQ 300
+AK+G YGA+L D L+T L+S L Q + +PV+ K R ++ + KT +Y L AG Q
Sbjct: 202 GIAKKGKYGAFLMDHPDLITQLISQLDQHLPIPVTAKYRRFETLEKTEQYTERLIEAGAQ 261
Query: 301 LLAVHGRTVDQRGMNTGLASWEHI-TAVRK--ALTIPVIANGNIQCLADVEACLAQTGVA 357
+L++HGRT +Q+G TGLA+WE I AV++ A P++ NGNI +DV ++QTG
Sbjct: 262 MLSIHGRTREQKGQFTGLANWEMIRGAVQRGHARGRPMLGNGNILIGSDVSELMSQTGAD 321
Query: 358 GVMTAEGNLYNPALF 372
GVM AEGNLYNPA+F
Sbjct: 322 GVMVAEGNLYNPAIF 336
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 50/73 (68%), Gaps = 9/73 (12%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEI----LMSTP 131
LGSPR+++APMVD SEL WR+LSR YG+ LCYTPM+ A + D++++ + L S
Sbjct: 82 LGSPRYVVAPMVDGSELAWRILSRYYGAELCYTPMIHAGLYSDDRQIKYRVEQLDLDSHE 141
Query: 132 E-----DRPLIIQ 139
E DRPLI+Q
Sbjct: 142 EGSEGLDRPLIVQ 154
>gi|408397470|gb|EKJ76612.1| hypothetical protein FPSE_03162 [Fusarium pseudograminearum CS3096]
Length = 506
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 116/276 (42%), Positives = 163/276 (59%), Gaps = 23/276 (8%)
Query: 133 DRPLIIQ-RTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQ 185
+RP ++ R + +GSP+FI+APMVD SE WR+L+R + S L YTPM+ A
Sbjct: 11 ERPTKLEGRAFYESIGSPKFIVAPMVDQSEFAWRMLTRSFISPTEQKSLLAYTPMLHARL 70
Query: 186 FIADKKLRQEILMSTPED-------------RPLIIQFCGNDSKNLTEAAKLAEPHCDGI 232
F D K R+ + D RPL +QFC ND L AAK P+CD +
Sbjct: 71 FSQDDKYRKAHFQAVKTDGETPWLDGNPSIDRPLFVQFCANDPDALLSAAKQVAPYCDAV 130
Query: 233 DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYAR 292
D+N+GCPQ +A++G YGA+LQ+D L+ L++ L + + VPV+ KIRI +T+ YA+
Sbjct: 131 DLNLGCPQGIARKGKYGAFLQEDQDLIFRLINILHKELPVPVTAKIRILDTKEETLAYAQ 190
Query: 293 MLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEAC 350
+ +AG +L VHGR +Q+G TGLA W+ I ++ +L + ANGNI D+E C
Sbjct: 191 NVLKAGASILTVHGRKREQKGHLTGLAEWQMIRFLKDSLPKETVIFANGNILQEGDIEKC 250
Query: 351 LAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEY 386
L TG GVM+AEGNL +PA+FT + P E EY
Sbjct: 251 LEATGADGVMSAEGNLSDPAIFT-KPPPVGEEGREY 285
>gi|398391496|ref|XP_003849208.1| hypothetical protein MYCGRDRAFT_48763 [Zymoseptoria tritici IPO323]
gi|339469084|gb|EGP84184.1| hypothetical protein MYCGRDRAFT_48763 [Zymoseptoria tritici IPO323]
Length = 584
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 110/269 (40%), Positives = 161/269 (59%), Gaps = 29/269 (10%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADKKLR 193
R + +GSP++++APMVD SE WRLL+R + + L Y+PM+ A FI K R
Sbjct: 47 RAFYESIGSPKYVVAPMVDQSEFAWRLLTRSFLPPDLRATVLAYSPMLHAKLFIDSPKYR 106
Query: 194 QE----------------ILMSTPE-DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINI 236
L P+ DRPL +QFC N+ L +AAK+ +P+CD +D+N+
Sbjct: 107 SSHFEPVKPPLTISEEDAYLDGNPKMDRPLFVQFCANEPDVLLQAAKIVQPYCDAVDLNL 166
Query: 237 GCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLER 296
GCPQ +AKRGHYGA+LQ+DW + L+++L + + +PV+ K+RI + K++EYA+M+
Sbjct: 167 GCPQGIAKRGHYGAFLQEDWDTIYKLINTLHKNLDIPVTAKMRILETKEKSLEYAKMILS 226
Query: 297 AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIP----VIANGNIQCLADVEACLA 352
AG ++ VHGR +Q+G NTGLA W + +R IP + NGNI D++ CL
Sbjct: 227 AGASIITVHGRQREQKGHNTGLADWTILRYIRD--NIPPDTVMFVNGNILQYDDLQKCLD 284
Query: 353 QTGVAGVMTAEGNLYNPALFTGQTRPAWE 381
TG VM+AEGNLY+P++F P E
Sbjct: 285 ATGADAVMSAEGNLYDPSIFAPGPPPGEE 313
>gi|302916105|ref|XP_003051863.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732802|gb|EEU46150.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 509
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 116/267 (43%), Positives = 163/267 (61%), Gaps = 21/267 (7%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADKKLR 193
R + +GSP+FI+APMVD SE WR+L+R + S L YTPM+ A F D+K R
Sbjct: 20 RAFYESIGSPKFIVAPMVDQSEFAWRMLTRSFLSPTEQSSLLAYTPMLHARLFSQDEKYR 79
Query: 194 Q---EILMSTPE---------DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQM 241
Q + + S + DRPL +QFC ND L AAK P+CD +D+N+GCPQ
Sbjct: 80 QAHFQAVRSNEDPWLDGNPSIDRPLFVQFCANDPDALLAAAKQVAPYCDAVDLNLGCPQG 139
Query: 242 VAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQL 301
+A++G YGA+LQ+D L+ L++ L + + VPV+ KIRI + +T+ YA+ + +AG +
Sbjct: 140 IARKGKYGAFLQEDQDLIFRLINILHKELPVPVTAKIRILETEEQTLAYAQNVLKAGASI 199
Query: 302 LAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGV 359
L VHGR +Q+G TGLA W+ I +R +L + ANGNI D+E CL TG GV
Sbjct: 200 LTVHGRRREQKGHLTGLAEWKMIKFLRDSLPKETVIFANGNILQEGDIERCLEATGADGV 259
Query: 360 MTAEGNLYNPALFTGQTRPAWELASEY 386
M+AEGNL +PA+F+ + P E EY
Sbjct: 260 MSAEGNLSDPAIFS-KPPPVGEEGREY 285
>gi|425773660|gb|EKV11997.1| Dihydrouridine synthase family protein, putative [Penicillium
digitatum PHI26]
gi|425782648|gb|EKV20547.1| Dihydrouridine synthase family protein, putative [Penicillium
digitatum Pd1]
Length = 536
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 109/262 (41%), Positives = 151/262 (57%), Gaps = 25/262 (9%)
Query: 137 IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADK 190
+ R + +GSP +++APMVD SE WR+L+R + L YTPM A F +
Sbjct: 25 LFGRKFYESIGSPTYVVAPMVDRSEFAWRMLTRSFMPPNDPKPLLAYTPMFHARLFGEQE 84
Query: 191 KLRQEILMSTPE-----------------DRPLIIQFCGNDSKNLTEAAKLAEPHCDGID 233
+R + T + DRPL +QFC N+ EAA+ PHCD +D
Sbjct: 85 NVRAKHFQPTRKVIGEDKDELFLDGNPAIDRPLFVQFCTNNPDEFLEAARHVAPHCDAVD 144
Query: 234 INIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARM 293
+N+GCPQ +AK+GHYGA+LQ+DW L+ LV L + VPV+ K RI KT+EYARM
Sbjct: 145 LNLGCPQGIAKKGHYGAFLQEDWDLIYKLVRRLHTELSVPVTVKFRIQDTKEKTLEYARM 204
Query: 294 LERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACL 351
+ AG ++ VHGR +Q+G NTG+A W +I +R L + ANGNI D+E CL
Sbjct: 205 ILSAGASIITVHGRRREQKGHNTGVADWGYIRYLRDNLPEDTVIFANGNILNYGDIETCL 264
Query: 352 AQTGVAGVMTAEGNLYNPALFT 373
TG VM+AEGNL +P++F+
Sbjct: 265 EATGADAVMSAEGNLSDPSIFS 286
>gi|115397477|ref|XP_001214330.1| tRNA-dihydrouridine synthase 1 [Aspergillus terreus NIH2624]
gi|114192521|gb|EAU34221.1| tRNA-dihydrouridine synthase 1 [Aspergillus terreus NIH2624]
Length = 536
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 108/262 (41%), Positives = 157/262 (59%), Gaps = 25/262 (9%)
Query: 137 IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSH------LCYTPMVSAHQFIADK 190
++ R + +GSP++I+APMVD SE WR+L+R + + L Y+PM A F
Sbjct: 27 LLGREFYKSIGSPKYIIAPMVDRSEFAWRMLTRSFMTPEEQKQLLAYSPMYHARLFREQL 86
Query: 191 KLRQE----------------ILMSTPE-DRPLIIQFCGNDSKNLTEAAKLAEPHCDGID 233
RQ+ L P DRPL +QFC N+ + EAA+ P+CD +D
Sbjct: 87 SFRQQHFHPTRAAVGKDDDAPYLDGNPAIDRPLFVQFCANNPDDFLEAAQHVAPYCDAVD 146
Query: 234 INIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARM 293
+N+GCPQ +AKRGHYG++LQ+DW L+ L++ L + +PV+ K RI + KT+EYA+M
Sbjct: 147 LNLGCPQGIAKRGHYGSFLQEDWDLIYKLINKLHTELPIPVTAKFRILESKEKTLEYAKM 206
Query: 294 LERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACL 351
+ AG ++ +HGRT +Q+G NTG+A W +I +R L + ANGN D+E CL
Sbjct: 207 ILSAGASIITLHGRTREQKGHNTGVADWSYIRYLRDNLPPETVIFANGNNLNHDDLERCL 266
Query: 352 AQTGVAGVMTAEGNLYNPALFT 373
TG GVM+AEGNL +PA+F+
Sbjct: 267 EATGADGVMSAEGNLSDPAIFS 288
>gi|255725686|ref|XP_002547772.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240135663|gb|EER35217.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 252
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 148/231 (64%), Gaps = 7/231 (3%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 199
R ++ +G P+ I+APMVD SEL WR+LSRRYG+ LCYTPM +A F +K R +
Sbjct: 21 RELYDAIGRPKTIVAPMVDHSELAWRILSRRYGAALCYTPMFNAKLFATQEKYRDSMWTK 80
Query: 200 TPE-----DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
+ DRPL++QFC ND L AA+ E CD +DIN+GCPQ +A++G YGA+L D
Sbjct: 81 GLDGNEKLDRPLVVQFCANDPDYLLTAARFIEDQCDAVDINLGCPQGIARKGRYGAFLMD 140
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
DW L+ L+ +L +++PV+ KIRIY D K++EYA+M+ AG Q + +HGRT + +G
Sbjct: 141 DWELIHKLIRNLHDNLKIPVTAKIRIYDDYEKSLEYAKMVLDAGAQFITIHGRTREMKGQ 200
Query: 315 NTGLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAE 363
TGLA+W+ + +R L + ANGNI +D++ C Q VM+AE
Sbjct: 201 KTGLANWKILKYLRDNLPKDQVFFANGNILYPSDLKRCEEQIECDAVMSAE 251
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
+ +G P+ I+APMVD SEL WR+LSRRYG+ LCYTPM +A F +K R + +
Sbjct: 24 YDAIGRPKTIVAPMVDHSELAWRILSRRYGAALCYTPMFNAKLFATQEKYRDSMWTKGLD 83
Query: 133 -----DRPLIIQ 139
DRPL++Q
Sbjct: 84 GNEKLDRPLVVQ 95
>gi|302499246|ref|XP_003011619.1| hypothetical protein ARB_02173 [Arthroderma benhamiae CBS 112371]
gi|302667563|ref|XP_003025363.1| hypothetical protein TRV_00424 [Trichophyton verrucosum HKI 0517]
gi|291175171|gb|EFE30979.1| hypothetical protein ARB_02173 [Arthroderma benhamiae CBS 112371]
gi|291189471|gb|EFE44752.1| hypothetical protein TRV_00424 [Trichophyton verrucosum HKI 0517]
Length = 567
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 113/271 (41%), Positives = 159/271 (58%), Gaps = 29/271 (10%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSH------LCYTPMVSAHQFIAD---- 189
R + +GSP+ ++APMVD SE WR+L+R + L Y+PM A F
Sbjct: 41 REFYESIGSPKMVVAPMVDRSEFAWRMLTRSFMGEGNPTPILAYSPMFHARFFNEAPAYR 100
Query: 190 ----KKLRQEILMSTPE-------------DRPLIIQFCGNDSKNLTEAAKLAEPHCDGI 232
+ +RQ + T E DRPLI+QFC ND L +AA+ E HCD +
Sbjct: 101 TQHFEPVRQAKTVGTDETTAEPYLDGNPKHDRPLIVQFCANDPDELLKAARHVEAHCDAV 160
Query: 233 DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYAR 292
D+N+GCPQ +AK+GHYGA+LQ+D L+ L++ L + +PV+ K RI + KT+EYAR
Sbjct: 161 DLNLGCPQGIAKKGHYGAFLQEDPDLIYKLINKLHNELSIPVTAKFRILETKEKTLEYAR 220
Query: 293 MLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEAC 350
M+ AG +L+VHGR +Q+G NTG+A+WE+I +R L + ANGNI +D+ C
Sbjct: 221 MILSAGASILSVHGRRREQKGHNTGVANWEYIRYLRDNLPPETVIFANGNILNHSDISRC 280
Query: 351 LAQTGVAGVMTAEGNLYNPALFTGQTRPAWE 381
L TG GVM+AEGNL +P +F+ P E
Sbjct: 281 LEVTGADGVMSAEGNLSDPTIFSTPPAPGEE 311
>gi|343469577|emb|CCD17484.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 521
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 173/322 (53%), Gaps = 59/322 (18%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP------ 201
+P +++ PMVD SELP+RLL RRYG+ L Y+PM+ A F + RQ +T
Sbjct: 68 APMYVVGPMVDQSELPFRLLCRRYGATLAYSPMLHARSFAQSAQYRQRYFTTTATTSQKL 127
Query: 202 ------------EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 249
D PL +QFCGND + + AA+L E C+ +D NIGCPQ +A+RGHYG
Sbjct: 128 STEAGASGEAQENDHPLFVQFCGNDPETVLAAARLVEDQCEAVDFNIGCPQGIARRGHYG 187
Query: 250 AYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309
++L +DW LL N++ +L ++VPV+ K+RI+ D T++YA ML G +L VHGRT
Sbjct: 188 SFLMEDWELLHNILHTLAVELRVPVTAKMRIFDDEALTLKYAEMLRDTGIYVLCVHGRTR 247
Query: 310 DQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367
+ +G A + I V L T+P+IANGNI DV LA TG G M AE L+
Sbjct: 248 ENKGQQQKQADLQMIRRVHSHLNGTVPIIANGNILTFEDVPRNLAVTGCEGYMCAEPLLW 307
Query: 368 NPALF----TGQT-------------------------------RP----AWELASEYLD 388
+P LF TG+T RP A + A+EYL+
Sbjct: 308 DPKLFAPLATGKTSKVSSDPTCANPSPSPLLSSTNRSGRLFAESRPNRLKAIDTAAEYLE 367
Query: 389 LVAQYPVRLQYARGHVFNMCHH 410
LV ++PV + + + H+F M +H
Sbjct: 368 LVRRFPVDVGFVKAHLFKMLYH 389
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 78 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
+P +++ PMVD SELP+RLL RRYG+ L Y+PM+ A F + RQ +T
Sbjct: 68 APMYVVGPMVDQSELPFRLLCRRYGATLAYSPMLHARSFAQSAQYRQRYFTTT 120
>gi|342183086|emb|CCC92566.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 523
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 173/322 (53%), Gaps = 59/322 (18%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP------ 201
+P +++ PMVD SELP+RLL RRYG+ L Y+PM+ A F + RQ +T
Sbjct: 68 APMYVVGPMVDQSELPFRLLCRRYGATLAYSPMLHARSFAQSAQYRQRYFTTTATTSQKL 127
Query: 202 ------------EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 249
D PL +QFCGND + + AA+L E C+ +D NIGCPQ +A+RGHYG
Sbjct: 128 STEAGASGEAQENDHPLFVQFCGNDPETVLAAARLVEDQCEAVDFNIGCPQGIARRGHYG 187
Query: 250 AYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309
++L +DW LL N++ +L ++VPV+ K+RI+ D T++YA ML G +L VHGRT
Sbjct: 188 SFLMEDWELLHNILHTLAVELRVPVTAKMRIFDDEALTLKYAEMLRDTGIYVLCVHGRTR 247
Query: 310 DQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367
+ +G A + I V L T+P+IANGNI DV LA TG G M AE L+
Sbjct: 248 ENKGQQQKQADLKMIRRVHSHLNGTVPIIANGNILTFEDVPRNLAVTGCEGYMCAEPLLW 307
Query: 368 NPALF----TGQT-------------------------------RP----AWELASEYLD 388
+P LF TG+T RP A + A+EYL+
Sbjct: 308 DPKLFAPLATGKTSKVSSDPTCANPSPSPLLSSTNRSGRLFAESRPNRLKAIDTAAEYLE 367
Query: 389 LVAQYPVRLQYARGHVFNMCHH 410
LV ++PV + + + H+F M +H
Sbjct: 368 LVRRFPVDVGFVKAHLFKMLYH 389
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 78 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
+P +++ PMVD SELP+RLL RRYG+ L Y+PM+ A F + RQ +T
Sbjct: 68 APMYVVGPMVDQSELPFRLLCRRYGATLAYSPMLHARSFAQSAQYRQRYFTTT 120
>gi|453088043|gb|EMF16084.1| FMN-linked oxidoreductase [Mycosphaerella populorum SO2202]
Length = 584
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/284 (40%), Positives = 159/284 (55%), Gaps = 38/284 (13%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADKKLR 193
R + +GSP++++APMVD SE WRLL+R + S L YTPM A F + K R
Sbjct: 12 RAFYESIGSPKYVVAPMVDQSEFAWRLLTRSFLPAELRSSILAYTPMFHAKLFSDNPKYR 71
Query: 194 QE--------ILMSTPED---------------------RPLIIQFCGNDSKNLTEAAKL 224
I M+ P D RPL +QFC ND ++A++
Sbjct: 72 ANHFEPLKPPITMADPPDAEHIKTMGEADRYLDGNPNMDRPLFVQFCANDPDVFLKSAQM 131
Query: 225 AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDV 284
P CD +D+N+GCPQ +AKRG+YGA+LQ+DW + L++ L + + VPV+ K R+ +
Sbjct: 132 VAPFCDAVDLNLGCPQGIAKRGNYGAFLQEDWDTIYKLINKLHKNLDVPVTAKFRVQETR 191
Query: 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI--ANGNIQ 342
KT+EYA+M+ AG ++ VHGR Q+G TGLA W + +R L + ANGNI
Sbjct: 192 EKTLEYAKMILSAGASIITVHGRQRHQKGHETGLADWAVLRYLRDNLPKDTVMFANGNIL 251
Query: 343 CLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEY 386
D+E CL TG VM+AEGNLY+P++FT Q PA E EY
Sbjct: 252 QHGDIEKCLEATGADAVMSAEGNLYDPSVFT-QGPPAGEEGREY 294
>gi|326484320|gb|EGE08330.1| tRNA-dihydrouridine synthase [Trichophyton equinum CBS 127.97]
Length = 566
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 158/271 (58%), Gaps = 29/271 (10%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSH------LCYTPMVSAHQFI------ 187
R + +GSP+ I+APMVD SE WR+L+R + L Y+PM A F
Sbjct: 41 REFYESIGSPKMIVAPMVDRSEFAWRMLTRSFMKEGSPTPILAYSPMFHARFFNDAPTYR 100
Query: 188 --------------ADKKLRQEILMSTPE-DRPLIIQFCGNDSKNLTEAAKLAEPHCDGI 232
D+ + L P+ DRPLI+QFC ND L +AA+ E HCD +
Sbjct: 101 TQHFEPVRQTKKAGTDENTTEPYLDGNPKHDRPLIVQFCANDPDELLKAARHVEEHCDAV 160
Query: 233 DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYAR 292
D+N+GCPQ +AK+GHYGA+LQ+D L+ L++ L + +PV+ K RI + KT+EYAR
Sbjct: 161 DLNLGCPQGIAKKGHYGAFLQEDPDLIYKLINKLHNELSIPVTAKFRILETKEKTLEYAR 220
Query: 293 MLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEAC 350
M+ AG +L+VHGR +Q+G +TG+A+WE+I +R L + ANGNI +D+ C
Sbjct: 221 MILSAGASILSVHGRRREQKGHSTGVANWEYIRYLRDNLPPETVIFANGNILNHSDINRC 280
Query: 351 LAQTGVAGVMTAEGNLYNPALFTGQTRPAWE 381
L TG GVM+AEGNL +P +F+ P E
Sbjct: 281 LEVTGADGVMSAEGNLSDPTIFSTPPAPGEE 311
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 27/94 (28%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSH------LCYTPMVSAHQFI--------- 117
+ +GSP+ I+APMVD SE WR+L+R + L Y+PM A F
Sbjct: 44 YESIGSPKMIVAPMVDRSEFAWRMLTRSFMKEGSPTPILAYSPMFHARFFNDAPTYRTQH 103
Query: 118 -----------ADKKLRQEILMSTPE-DRPLIIQ 139
D+ + L P+ DRPLI+Q
Sbjct: 104 FEPVRQTKKAGTDENTTEPYLDGNPKHDRPLIVQ 137
>gi|358391842|gb|EHK41246.1| hypothetical protein TRIATDRAFT_78073 [Trichoderma atroviride IMI
206040]
Length = 539
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 114/268 (42%), Positives = 161/268 (60%), Gaps = 22/268 (8%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADKKLR 193
R + +GSP+FI+APMVD SE WRLL+R + L YTPM+ A F D+K R
Sbjct: 19 RAFYESIGSPKFIVAPMVDQSEFAWRLLTRSFLLPSEQSKLLAYTPMLHARLFSQDEKYR 78
Query: 194 ----QEILMSTPE---------DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQ 240
Q + + E DRPL +QFC ND + L AAK P+CD +D+N+GCPQ
Sbjct: 79 KAHYQAVRAGSSEPWLDGNPKIDRPLFVQFCANDPEALLSAAKHVAPYCDAVDLNLGCPQ 138
Query: 241 MVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQ 300
+A++G YGA+LQ+D L+ L++ L + + +PV+ KIR+ + KT+EYA+ + AG
Sbjct: 139 GIARKGRYGAFLQEDQDLIFRLINILHKELSIPVTAKIRVLETKEKTLEYAKNVLSAGAS 198
Query: 301 LLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAG 358
+L VHGR +Q+G TG+A+W+ I +R L + ANGNI D++ CL TG G
Sbjct: 199 ILTVHGRRREQKGHLTGVANWDMIRFLRDNLPPETVIFANGNILQDGDLDKCLEATGADG 258
Query: 359 VMTAEGNLYNPALFTGQTRPAWELASEY 386
+M+AEGNL +P LF G P E + EY
Sbjct: 259 IMSAEGNLSDPGLF-GNPPPPEEKSREY 285
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 19/86 (22%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADKKLR--- 123
+ +GSP+FI+APMVD SE WRLL+R + L YTPM+ A F D+K R
Sbjct: 22 YESIGSPKFIVAPMVDQSEFAWRLLTRSFLLPSEQSKLLAYTPMLHARLFSQDEKYRKAH 81
Query: 124 -QEILMSTPE---------DRPLIIQ 139
Q + + E DRPL +Q
Sbjct: 82 YQAVRAGSSEPWLDGNPKIDRPLFVQ 107
>gi|70996530|ref|XP_753020.1| dihydrouridine synthase family protein [Aspergillus fumigatus
Af293]
gi|66850655|gb|EAL90982.1| dihydrouridine synthase family protein, putative [Aspergillus
fumigatus Af293]
gi|159131754|gb|EDP56867.1| dihydrouridine synthase family protein, putative [Aspergillus
fumigatus A1163]
Length = 541
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 173/322 (53%), Gaps = 53/322 (16%)
Query: 129 STPEDRPLIIQRTIFPRLGSPRFILAPMVDASEL----------PWRLLSRRY------G 172
+T E R + R + LGSP++I+APMVD SE WR+L+R +
Sbjct: 17 ATAEPRKKLFGREFYESLGSPKYIVAPMVDRSEFRIRTNHSISQAWRMLTRSFMPPDDPK 76
Query: 173 SHLCYTPMVSAHQFIADKKLRQEILMSTPE-----------------DRPLIIQFCGNDS 215
L Y+PM A F +R + T DRPLI+QFC ND
Sbjct: 77 PILAYSPMYHARLFREQANVRWQHFQPTRAGLDKNDNSLYLDGNPAFDRPLIVQFCANDP 136
Query: 216 KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVS 275
+ EAA+ P+CD +D+N+GCPQ +A++GHYGA+LQ+DW L+ L++ L + + +PV+
Sbjct: 137 DDFLEAARHVAPYCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYKLINRLHKELPIPVT 196
Query: 276 CKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TI 333
K RI + KT+EYA+M+ AG ++ +HGRT +Q+G NTGLA W +I +R L
Sbjct: 197 AKFRIQESKEKTLEYAKMILSAGASIITLHGRTREQKGHNTGLADWSYIRYLRDNLPPET 256
Query: 334 PVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT------GQTRPAWE------ 381
+ ANGN D+E CL TG GVM+AEGNL +PA+F+ + R W
Sbjct: 257 VIFANGNNLNHDDLERCLEATGADGVMSAEGNLSDPAIFSKPPPVGSEGREYWRGRNGKG 316
Query: 382 ------LASEYLDLVAQYPVRL 397
+ YLD++ QY + +
Sbjct: 317 GYRIDAIFRRYLDIIYQYVIEV 338
>gi|67517419|ref|XP_658560.1| hypothetical protein AN0956.2 [Aspergillus nidulans FGSC A4]
gi|40746829|gb|EAA65985.1| hypothetical protein AN0956.2 [Aspergillus nidulans FGSC A4]
gi|259488751|tpe|CBF88446.1| TPA: dihydrouridine synthase family protein, putative
(AFU_orthologue; AFUA_1G16550) [Aspergillus nidulans
FGSC A4]
Length = 563
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 109/272 (40%), Positives = 155/272 (56%), Gaps = 28/272 (10%)
Query: 129 STPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVS 182
+ P R + R + +GSP++I+APMVD SE WR+L+R + S L Y+PM
Sbjct: 22 AEPVTRKKLHGRAFYESIGSPKYIVAPMVDRSEFAWRMLTRSFMTPEESKSVLAYSPMYH 81
Query: 183 AHQFIADKKLRQEILMSTPE--------------------DRPLIIQFCGNDSKNLTEAA 222
A F R + T DRPL +QFC ND + AA
Sbjct: 82 ARLFEEHAGYRAKAFHPTRAWGDTKCKGDDSPYLDGNPAIDRPLFVQFCANDPDDFFNAA 141
Query: 223 KLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282
+ P+CD +D+N+GCPQ +A+RGHYGA+LQ+DW L+ L++ L ++VPV+ K RI +
Sbjct: 142 RHVAPYCDAVDLNLGCPQGIARRGHYGAFLQEDWDLIYKLINKLHMELEVPVTAKFRIQE 201
Query: 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGN 340
KT+EYA+M+ AG ++ +HGRT +Q+G NTGLA W +I +R L + ANGN
Sbjct: 202 SKEKTLEYAKMILSAGASIITLHGRTREQKGHNTGLADWSYIRYLRDNLPPDTVIFANGN 261
Query: 341 IQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
D+ CL TG GVM+AEGNL +P++F
Sbjct: 262 NLNHDDLARCLEATGADGVMSAEGNLSDPSIF 293
>gi|261191538|ref|XP_002622177.1| dihydrouridine synthase [Ajellomyces dermatitidis SLH14081]
gi|239589943|gb|EEQ72586.1| dihydrouridine synthase [Ajellomyces dermatitidis SLH14081]
gi|239612649|gb|EEQ89636.1| dihydrouridine synthase [Ajellomyces dermatitidis ER-3]
gi|327351718|gb|EGE80575.1| dihydrouridine synthase [Ajellomyces dermatitidis ATCC 18188]
Length = 564
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 114/276 (41%), Positives = 157/276 (56%), Gaps = 36/276 (13%)
Query: 134 RPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSH------LCYTPMVSAHQFI 187
R + R + LGSP+ ILAPMVD SE WR+L+R + L Y+PM A F
Sbjct: 9 RKKLFGREFYESLGSPKMILAPMVDRSEFAWRMLTRSFMDSNSPHPLLAYSPMFHARLFK 68
Query: 188 ADKKLR-QEILMSTPE---------------------------DRPLIIQFCGNDSKNLT 219
R Q + P+ DRPLI+QFC ND +L
Sbjct: 69 ESPGYRLQHFEATRPKPPRSPCTDDGESPLPGDIRYLDGNPALDRPLIVQFCANDPDDLL 128
Query: 220 EAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR 279
+AA+ EP CD +D+N+GCPQ +A++GHYGA+LQ+ L+ L+++L + + +PV+ K R
Sbjct: 129 QAARTVEPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYKLINTLHRELSIPVTAKFR 188
Query: 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIA 337
I + KT+EYARM+ AG ++AVHGR +Q+G NTGLA W +I +R L + A
Sbjct: 189 IQETKEKTLEYARMILSAGASIIAVHGRRREQKGHNTGLADWSYIRYLRDNLPPDTVIFA 248
Query: 338 NGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
NGNI D+E CL TG GVM+AEGNL +P +FT
Sbjct: 249 NGNILNHGDIERCLEATGADGVMSAEGNLCDPTIFT 284
>gi|452002465|gb|EMD94923.1| hypothetical protein COCHEDRAFT_1168295 [Cochliobolus
heterostrophus C5]
Length = 584
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 111/268 (41%), Positives = 151/268 (56%), Gaps = 35/268 (13%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADKKLR 193
R + +GSP+ +LAPMV+ SE WRLLSR + GS L YTPM + F + R
Sbjct: 35 RAFYESIGSPKLVLAPMVEQSEFAWRLLSRSFLPDSEKGSLLAYTPMFHSKMFGEKSQYR 94
Query: 194 QEI----------------LMSTPE-----------DRPLIIQFCGNDSKNLTEAAKLAE 226
L P+ DRPL +QFC ND + AAK
Sbjct: 95 DSHFQPLKSPLPSPVDNYHLSQLPDSSRHLDGNPAFDRPLTVQFCSNDPDDFLRAAKHVA 154
Query: 227 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNK 286
P CD +D+N+GCPQ +AKRG YGA+LQ+DW L+ ++ L + + +PV+ K+RI + K
Sbjct: 155 PFCDAVDLNLGCPQGIAKRGKYGAFLQEDWDLIARMIRKLHEELDIPVTAKMRILETPEK 214
Query: 287 TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI--ANGNIQCL 344
T+ YA+ + AG +L VHGR +Q+G NTGLA W+ I +R+ L + ANGNI
Sbjct: 215 TLAYAKTILDAGASILTVHGRRREQKGHNTGLADWQMIRFLRENLPKETVLFANGNILQH 274
Query: 345 ADVEACLAQTGVAGVMTAEGNLYNPALF 372
D+ ACL TG GVM+AEGNLY+P +F
Sbjct: 275 EDIAACLEATGADGVMSAEGNLYDPTIF 302
>gi|407918795|gb|EKG12059.1| Carboxylesterase type B [Macrophomina phaseolina MS6]
Length = 507
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/276 (40%), Positives = 155/276 (56%), Gaps = 35/276 (12%)
Query: 134 RPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFI 187
RP + R + LGSP+ +LAPMV+ASE WR+LSR + L YTPM + F
Sbjct: 23 RPKLHGRAFYESLGSPKLVLAPMVEASEFAWRMLSRSFMPDDQKNDLLAYTPMFHSRLFH 82
Query: 188 ADKKLRQEILM-------STPE--------------------DRPLIIQFCGNDSKNLTE 220
R++ S P+ DRPL +QFC ND +
Sbjct: 83 EKPPYRKQSFQPLRDAIPSPPDPAHLAQYTLSDAHLDGNPAIDRPLFVQFCSNDPNDFLL 142
Query: 221 AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI 280
AA+ P CD +D+N+GCPQ +A++GHYGA+LQ+DW +++L+S L + +PV+ K R+
Sbjct: 143 AAQHVAPFCDAVDLNLGCPQGIARKGHYGAFLQEDWDTISSLISRLHAELPIPVTAKFRV 202
Query: 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIAN 338
+ KT+ YARM+ AG ++ VHGR Q+G TGLA WE I +R L + AN
Sbjct: 203 QETHEKTLAYARMILDAGASIITVHGRQRHQKGHETGLADWEAIRYLRDKLPPDTVIFAN 262
Query: 339 GNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG 374
GNI D++ACL TG GVM+AEGNL++P +F G
Sbjct: 263 GNILQHGDIKACLEATGADGVMSAEGNLHDPTIFAG 298
>gi|400597446|gb|EJP65179.1| dihydrouridine synthase [Beauveria bassiana ARSEF 2860]
Length = 551
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 110/260 (42%), Positives = 155/260 (59%), Gaps = 27/260 (10%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSH------LCYTPMVSAHQFIADKKLR 193
R + +GSP+FI+APMV+ SE WR+LSR + S L YTPM A F D K
Sbjct: 34 RAFYESIGSPKFIVAPMVNQSEFAWRMLSRSFLSADEKSKMLAYTPMFHARLFSQDPKYL 93
Query: 194 QEILMST-------------------PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDI 234
+ +T DRPL +QFC ND +L AA+ P+CD +D+
Sbjct: 94 KAHFQATRPGATGDSYDSSLWLDGNPSGDRPLFVQFCANDPAHLLAAARQVAPYCDAVDL 153
Query: 235 NIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARML 294
N+GCPQ +A++GHYGA+LQ+D L+ L+ +L + +PV+ KIRI + +T+ YA+ +
Sbjct: 154 NLGCPQGIARKGHYGAFLQEDQDLVFRLIHTLHTELSIPVTAKIRILETKEQTLAYAQTV 213
Query: 295 ERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLA 352
RAG +L VHGR +Q+G TG+A W+ + +R++L + ANGN+ DVEACLA
Sbjct: 214 LRAGASILTVHGRRREQKGHLTGVADWQMLRFLRESLPPETVLFANGNVLQHGDVEACLA 273
Query: 353 QTGVAGVMTAEGNLYNPALF 372
TG GVM+AEGNL NP +F
Sbjct: 274 ATGFDGVMSAEGNLSNPGVF 293
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 6/55 (10%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSH------LCYTPMVSAHQFIADKK 121
+ +GSP+FI+APMV+ SE WR+LSR + S L YTPM A F D K
Sbjct: 37 YESIGSPKFIVAPMVNQSEFAWRMLSRSFLSADEKSKMLAYTPMFHARLFSQDPK 91
>gi|452846144|gb|EME48077.1| hypothetical protein DOTSEDRAFT_69872 [Dothistroma septosporum
NZE10]
Length = 568
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/289 (39%), Positives = 161/289 (55%), Gaps = 38/289 (13%)
Query: 135 PLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIA 188
P + R + +GSP ++APMV+ SE WR+L+R + S L Y+PM+ A F
Sbjct: 3 PKLHGRAFYESIGSPNHVIAPMVEQSEFAWRMLTRSFLPPDLRTSILAYSPMLHAKLFAD 62
Query: 189 DKKLRQE--------ILMSTPED---------------------RPLIIQFCGNDSKNLT 219
K R + M +P D RPL +QFC N+
Sbjct: 63 GPKYRTNSFQPLKPPLTMPSPGDSEHAKSFSEDDMYLDGNPKIDRPLFVQFCANEPDVFL 122
Query: 220 EAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR 279
AAKL +P+CD +D+N+GCPQ +AKRGHYGA+LQ+DW L+ L++ L Q + +PV+ K+R
Sbjct: 123 RAAKLVQPYCDAVDLNLGCPQGIAKRGHYGAFLQEDWDLIYKLINKLHQELDIPVTAKLR 182
Query: 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIA 337
+ + KT+EYA M+ AG ++ VHGR Q+G NTGLA W + +R+ L + A
Sbjct: 183 VQETKEKTLEYANMILGAGASIITVHGRQRHQKGHNTGLADWTVLRYLRERLPPDTVIFA 242
Query: 338 NGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEY 386
NGNI D++ CL TG VM+AEGNLY+P++F PA E EY
Sbjct: 243 NGNILQYGDLQKCLDATGADAVMSAEGNLYDPSIFV-PPPPAGEEGREY 290
>gi|399216637|emb|CCF73324.1| unnamed protein product [Babesia microti strain RI]
Length = 360
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 124/318 (38%), Positives = 176/318 (55%), Gaps = 20/318 (6%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAH-------QFIADKKLRQEILMSTPEDR 204
++APMV S+L +RLL RRYGS L YTPM+ A F+ K R + + P+DR
Sbjct: 35 VVAPMVAQSDLAFRLLCRRYGSELAYTPMLHARYYNSDSRNFLTSKTYRDKNFHTLPQDR 94
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PL QFCGN+ + AA++ E D +DIN GCPQ +A+RG+YGA+L D+ + ++S
Sbjct: 95 PLFAQFCGNNPDTIVRAARIIESEIDAVDINFGCPQEIARRGNYGAFLLDNPQSMCEIIS 154
Query: 265 SLRQAVQVPVSCKIR-IYQDVNKTVEYARMLE-------RAGCQLLAVHGRTVDQRGMNT 316
+L +++ VPV+CKIR + D TV +R LE +GC ++A+HGR D+RG
Sbjct: 155 TLSKSLNVPVTCKIRKLDGDFQYTVNLSRQLEVTTFITQASGCDIIAIHGRRKDERGSKV 214
Query: 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT 376
A W+ I V ++ IP+IANG + L D CL TG G+M AE L NPA F+
Sbjct: 215 KSADWDVIKNVVNSVRIPIIANGGVSSLEDAIKCLEYTGCTGIMVAEAILENPAFFSRNK 274
Query: 377 RPAWELASEYLDLVAQYPVR--LQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLR 434
+L EYL ++ ++ R + H F M + LL L E + L TN I R
Sbjct: 275 TRRSDLFMEYLQIIEEFQCRDAENCIKPHAFKMLYPLLKL-EGLSYQQLESCTN-IGQFR 332
Query: 435 KAVDMLRERFIDYHEGRK 452
+ V L E F D + +K
Sbjct: 333 EVVKKL-EPFSDKFDKQK 349
>gi|336273712|ref|XP_003351610.1| hypothetical protein SMAC_00151 [Sordaria macrospora k-hell]
gi|380095890|emb|CCC05936.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 614
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/305 (39%), Positives = 169/305 (55%), Gaps = 51/305 (16%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRY----GSH--LCYTPMVSAHQFIADKKLR 193
R + +GSP++I+APMVD SE WR+L+R + H LCYTPM A F K R
Sbjct: 41 RAFYESIGSPKYIVAPMVDQSEFVWRMLTRSFLPTEEQHKLLCYTPMFHARLFTEAPKYR 100
Query: 194 QE-----------------------ILMSTPE-DRPLIIQFCGNDSKNLTEAAKLAEPHC 229
L P DR L +QFC ND L AAKL P+C
Sbjct: 101 DSHYQPIRGPLTENSPRPGSPDYVPFLDGNPSIDRSLFVQFCANDPSYLLSAAKLVAPYC 160
Query: 230 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVE 289
D +D+N+GCPQ +AKRG YG++LQ++ L+ L+++L + + +PV+ KIRI + T++
Sbjct: 161 DAVDLNLGCPQGIAKRGQYGSFLQENQELIFELINTLHKELDIPVTAKIRILETKEATLK 220
Query: 290 YARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADV 347
YA+ + RAG +L VHGR +Q+G TGLA+WE+I +R+ L + ANGNI +D+
Sbjct: 221 YAQNVLRAGASILTVHGRRREQKGHQTGLANWEYIRYLRENLPKETVIFANGNILQYSDL 280
Query: 348 EACLAQTGVAGVMTAEGNLYNPALFT-----GQ-----------TRPAWELAS---EYLD 388
E CL TG GVM+AEGNL +P LF G+ +R W + + YLD
Sbjct: 281 EKCLEATGADGVMSAEGNLSDPGLFAKPPAVGEEGREYWRSKDGSRGGWRVDAVLRRYLD 340
Query: 389 LVAQY 393
++ +Y
Sbjct: 341 IIYKY 345
>gi|224003889|ref|XP_002291616.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973392|gb|EED91723.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 333
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 130/314 (41%), Positives = 184/314 (58%), Gaps = 27/314 (8%)
Query: 154 APMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEI--LMSTP-EDRPLIIQF 210
APMVDAS+LP+RLL+RRY + LC+TPM+ A FI K R++ + P +DRPLI QF
Sbjct: 1 APMVDASDLPYRLLTRRYNTSLCFTPMIHAKMFIDKPKYREKFWKIEGMPSQDRPLIAQF 60
Query: 211 CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVSSLRQ 268
CG+D L +A K+ EPH DG+DIN GCPQ +AKRG YGA+L +D+ + +V L
Sbjct: 61 CGHDKNVLLQAMKVLEPHVDGVDINCGCPQNIAKRGRYGAFLMEEDNGDKIVEIVQHLTA 120
Query: 269 AVQVPVSCKIRIY-QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
+ VPVS K+RI + ++ + L AG +L +HGRT Q ++TG A+W++I V
Sbjct: 121 NLNVPVSVKLRILPTGIEDSLALYKRLVDAGAAMLTIHGRTRFQNKVDTGTANWDYIRQV 180
Query: 328 RKALT--IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT---------GQT 376
+ +PVIANGNI L +V C TGV GVM++EG L P LFT +T
Sbjct: 181 VDLVGDRVPVIANGNICNLDEVRKCFEVTGVDGVMSSEGILEYPPLFTETNVESTGFKRT 240
Query: 377 RPA-WELASEYLDLVAQYPVR-------LQYARGHVFNMCHHLLTLPENSDVRLLVGKTN 428
P ++A +YL+L +YP L+ R H+ H L + ++ +R V KT
Sbjct: 241 GPGRLQMAEDYLELCKEYPSEEGGQGSGLKCIRAHLHRFLHADLQV--HTKIRDAVVKTF 298
Query: 429 HIKDLRKAVDMLRE 442
++ +AV M+RE
Sbjct: 299 TLEAAVEAVSMIRE 312
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 59/102 (57%), Gaps = 10/102 (9%)
Query: 84 APMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEI--LMSTP-EDRPLIIQR 140
APMVDAS+LP+RLL+RRY + LC+TPM+ A FI K R++ + P +DRPLI Q
Sbjct: 1 APMVDASDLPYRLLTRRYNTSLCFTPMIHAKMFIDKPKYREKFWKIEGMPSQDRPLIAQF 60
Query: 141 TIFPR--LGSPRFILAPMVDASEL----PWRLLSR-RYGSHL 175
+ L +L P VD ++ P + R RYG+ L
Sbjct: 61 CGHDKNVLLQAMKVLEPHVDGVDINCGCPQNIAKRGRYGAFL 102
>gi|315043678|ref|XP_003171215.1| hypothetical protein MGYG_07214 [Arthroderma gypseum CBS 118893]
gi|311345004|gb|EFR04207.1| hypothetical protein MGYG_07214 [Arthroderma gypseum CBS 118893]
Length = 568
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 112/282 (39%), Positives = 162/282 (57%), Gaps = 33/282 (11%)
Query: 125 EILMSTPEDRPLIIQ-----RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSH----- 174
EI+ + E +P + + R + +G P+ I+APMVD SE WR+L+R +
Sbjct: 21 EIMQAVNEIKPELSKKKLHGREFYESIGCPKMIVAPMVDRSEFAWRMLTRSFTGEESSPP 80
Query: 175 -LCYTPMVSAHQFI-------------------ADKKLRQEILMSTPE-DRPLIIQFCGN 213
L Y+PM A F D+ + L P+ DRP I+QFC N
Sbjct: 81 ILAYSPMFHARFFNEAPAYRTQHFEPIRQTKAGTDEATAEAYLDGNPKYDRPFIVQFCAN 140
Query: 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVP 273
+ L +AA+ E HCD +D+N+GCPQ +AK+GHYGA+LQ+D L+ L++ L + +P
Sbjct: 141 NPDELLKAARHVEEHCDAVDLNLGCPQGIAKKGHYGAFLQEDPDLIYKLINKLHTELSIP 200
Query: 274 VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-- 331
V+ K RI + KT+EYARM+ AG +L+VHGR +Q+G NTG+A+WE+I +R L
Sbjct: 201 VTAKFRILETKEKTLEYARMIISAGASILSVHGRRREQKGHNTGVANWEYIRYLRDNLPP 260
Query: 332 TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ ANGNI D+ CL TG GVM+AEGNL +P +F+
Sbjct: 261 ETVIFANGNILNHDDLSRCLEATGADGVMSAEGNLSDPTIFS 302
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSH------LCYTPMVSAHQF 116
+ +G P+ I+APMVD SE WR+L+R + L Y+PM A F
Sbjct: 44 YESIGCPKMIVAPMVDRSEFAWRMLTRSFTGEESSPPILAYSPMFHARFF 93
>gi|67588468|ref|XP_665355.1| ENSANGP00000019228 [Cryptosporidium hominis TU502]
gi|54656003|gb|EAL35125.1| ENSANGP00000019228 [Cryptosporidium hominis]
Length = 384
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 115/301 (38%), Positives = 174/301 (57%), Gaps = 12/301 (3%)
Query: 156 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDS 215
MVD SEL +RL+ ++YG L Y+PM + F + R+ + ED P+I+QFCGND
Sbjct: 1 MVDGSELAFRLICKKYGCDLGYSPMYHSGLFSKLQGYRETNFQTCEEDDPMIVQFCGNDP 60
Query: 216 KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA-VQVPV 274
+ L +A+K + GIDIN GCPQ +AKRG+YGA+L + L+ ++S+L ++ ++ PV
Sbjct: 61 ETLVKASKFIDDKVKGIDINFGCPQNIAKRGNYGAFLLSNPDLMERIISTLSESDLKCPV 120
Query: 275 SCKIRI--YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT 332
SCKIRI + D+ T+ + LE AG ++AVHGRT+ RG+ TG A+WE + ++ +
Sbjct: 121 SCKIRILDHHDLQPTINLIKRLESAGACMIAVHGRTMTSRGVLTGPANWEALKILKSRCS 180
Query: 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPA--------WELAS 384
IP IANG I D++ CL TG VM+AEG L NP LF G P +++A
Sbjct: 181 IPFIANGGISNYEDIQKCLNYTGADAVMSAEGILENPWLFQGFKTPEAINNKPSQFQIAL 240
Query: 385 EYLDLVAQY-PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYLD Y P + R H++ + H + +LP R + ++ + + + V L
Sbjct: 241 EYLDYCILYPPPNVGIIRTHLYRIFHTIFSLPGAHIFRDEINNSHQVHEFQLFVQNLENF 300
Query: 444 F 444
+
Sbjct: 301 Y 301
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 86 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
MVD SEL +RL+ ++YG L Y+PM + F + R+ + ED P+I+Q
Sbjct: 1 MVDGSELAFRLICKKYGCDLGYSPMYHSGLFSKLQGYRETNFQTCEEDDPMIVQ 54
>gi|290982753|ref|XP_002674094.1| predicted protein [Naegleria gruberi]
gi|284087682|gb|EFC41350.1| predicted protein [Naegleria gruberi]
Length = 450
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/315 (37%), Positives = 184/315 (58%), Gaps = 13/315 (4%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE-DR 204
+GSP++++APMVD SE+ +RLLS+ YG+ L YTPM F KK R P+ +
Sbjct: 100 IGSPKYVVAPMVDQSEMAFRLLSKEYGATLAYTPMFHGMYFAYHKKYRARFYQFNPDLEG 159
Query: 205 PLIIQFCGNDSKNLTEAAK----LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
P+ QFC ND + + K L++ ID+N+GCPQ +A+RG YG++L +D +
Sbjct: 160 PVFAQFCTNDPETFVQCGKRVWDLSKQKISAIDLNLGCPQRIARRGRYGSFLMEDLQTVH 219
Query: 261 NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320
++++ + +PV+ KIRI++D+ T+ Y + + AG Q+L VHGRT +Q+G N A
Sbjct: 220 SIINKAHLELPMPVTAKIRIFEDLELTMNYVKTVVDAGAQVLCVHGRTREQKGANQNYAD 279
Query: 321 WEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT-GQTRP 378
W I A+R+ IP+IANGNI+ DV+ CL T V VM+ EG L NPALF GQ
Sbjct: 280 WTVIRAIREQFPQIPMIANGNIRTFQDVQDCLEYTRVDAVMSGEGLLENPALFNGGQFVH 339
Query: 379 AWELASEYLDLV-AQYPVRLQYARGHVFNMCHHLLTLPEN-SDVRLLVGKTNHIKDLRKA 436
+++ +Y+++ +P + H+F + +PE+ SD+R ++GK + + R+
Sbjct: 340 PLDISDKYVNICKTHFPPDHNNIKRHLFRILDKY--IPEDRSDLRGILGKASLWEHYREF 397
Query: 437 VDMLR--ERFIDYHE 449
VD R E D+ E
Sbjct: 398 VDYARKIENEFDFKE 412
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 109/242 (45%), Gaps = 39/242 (16%)
Query: 71 DAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
D W +GSP++++APMVD SE+ +RLLS+ YG+ L YTPM F KK R
Sbjct: 95 DFWRSIGSPKYVVAPMVDQSEMAFRLLSKEYGATLAYTPMFHGMYFAYHKKYRARFYQFN 154
Query: 131 PE-DRPLIIQR-----TIFPRLGSPRFILAPM-VDASEL----PWRLLSR-RYGSHLCYT 178
P+ + P+ Q F + G + L+ + A +L P R+ R RYGS L
Sbjct: 155 PDLEGPVFAQFCTNDPETFVQCGKRVWDLSKQKISAIDLNLGCPQRIARRGRYGSFLM-E 213
Query: 179 PMVSAHQFIADKKLRQEILMSTP----EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDI 234
+ + H I L + ++ ED L + + K + +A G +
Sbjct: 214 DLQTVHSIINKAHLELPMPVTAKIRIFEDLELTMNYV----KTVVDA---------GAQV 260
Query: 235 NIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPV--SCKIRIYQDVNKTVEYA 291
+ ++G Y DW ++ ++R+ Q+P+ + IR +QDV +EY
Sbjct: 261 LCVHGRTREQKGANQNYA--DW----TVIRAIREQFPQIPMIANGNIRTFQDVQDCLEYT 314
Query: 292 RM 293
R+
Sbjct: 315 RV 316
>gi|440789875|gb|ELR11166.1| tRNAdihydrouridine synthase 1-like protein, putative [Acanthamoeba
castellanii str. Neff]
Length = 333
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 113/260 (43%), Positives = 153/260 (58%), Gaps = 21/260 (8%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG PR ILAPMV CY+PM+ A F AD R L S P DRP
Sbjct: 19 LGRPRHILAPMV------------------CYSPMLHAGPFHADPSYRARHLTSAPGDRP 60
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LI+QFCGND + + +AA L + CD +DIN GCPQ A++G++GAYL +WPL+ +VS+
Sbjct: 61 LIVQFCGNDPEEILQAALLVQDECDAVDINFGCPQKCARKGNFGAYLLHNWPLMEAIVST 120
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L + + +PV CKIR+ + T++ A +L+ AGCQ+LAVHGRT + + G A W I
Sbjct: 121 LHKNLSIPVCCKIRLLPKLEDTIKLALVLQNAGCQVLAVHGRT--RESNSRGPADWAAIR 178
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRP-AWELAS 384
+++AL+IPV+ANG + L DVE CL +T VM A L NP F G + EL
Sbjct: 179 QIKEALSIPVVANGGVDELEDVERCLNETKADAVMVAYPALLNPRFFGGGEKADGVELLH 238
Query: 385 EYLDLVAQYPVRLQYARGHV 404
EYL V +YP + + + H
Sbjct: 239 EYLSYVERYPAQSKTIKSHA 258
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 33/68 (48%), Gaps = 19/68 (27%)
Query: 73 WTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP 131
W Q LG PR ILAPMV CY+PM+ A F AD R L S P
Sbjct: 15 WEQVLGRPRHILAPMV------------------CYSPMLHAGPFHADPSYRARHLTSAP 56
Query: 132 EDRPLIIQ 139
DRPLI+Q
Sbjct: 57 GDRPLIVQ 64
>gi|452985769|gb|EME85525.1| hypothetical protein MYCFIDRAFT_130789 [Pseudocercospora fijiensis
CIRAD86]
Length = 528
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 159/277 (57%), Gaps = 37/277 (13%)
Query: 135 PLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIA 188
P + R + +GSP++++APMVD SE WR+L+R + S L Y+PM+ A F
Sbjct: 3 PKLHGRAFYESIGSPKYVVAPMVDQSEFAWRMLTRSFLPPDLRTSILAYSPMLHAKLFAD 62
Query: 189 DKKLRQEIL------MSTPE-----------------------DRPLIIQFCGNDSKNLT 219
K R ++ PE DRPL +QFC ND +
Sbjct: 63 GPKYRAAHFEPLKPPLAMPEPADSEHQKTFKEDDMYLDGNPKFDRPLFVQFCANDPEAFL 122
Query: 220 EAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR 279
+AA++ +P+CD ID+N+GCPQ +AKRG YGA+LQ++W L+ L+++L + +PV+ K R
Sbjct: 123 KAARVVQPYCDAIDLNLGCPQGIAKRGQYGAFLQENWDLIYKLINTLHTGLDIPVTAKFR 182
Query: 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI--A 337
I + KT+EYA+M+ AG ++ VHGR Q+G TGLA W+ + +R L + A
Sbjct: 183 IQETKEKTLEYAKMILSAGASIITVHGRQRHQKGHETGLADWKMLRFLRDNLPSETVMFA 242
Query: 338 NGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG 374
NGNI D++ CL TG G+M+AEGNLY+P++F
Sbjct: 243 NGNILQYDDLQNCLDATGADGIMSAEGNLYDPSIFAA 279
>gi|340959502|gb|EGS20683.1| dihydrouridine synthase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 552
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 108/261 (41%), Positives = 152/261 (58%), Gaps = 21/261 (8%)
Query: 134 RPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFI 187
+P + R + +GSP++I+APMVD SE WR+LSR + L Y+PM A F
Sbjct: 22 KPKLHGRAFYESIGSPKYIVAPMVDQSEFAWRMLSRSFFPESERSKILAYSPMFHARMFR 81
Query: 188 ADKKLRQEILMST-------------PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDI 234
R E T DRP +QFC ND +L AAK+ +P+CD +D+
Sbjct: 82 ESDVYRDEHFQPTRPGSDVPWLDGNPAFDRPFFVQFCANDPDHLLAAAKIVQPYCDAVDL 141
Query: 235 NIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARML 294
N+GCPQ +AK+G YG++LQ+D L+ L+++L + + +PV+ KIRI T++YA+ +
Sbjct: 142 NLGCPQNIAKKGRYGSFLQEDQELIFKLINTLHENLDIPVTAKIRILDTKEATLKYAQNV 201
Query: 295 ERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLA 352
RAG +L VHGR +Q+G TGLA WE I +R L + ANGNI D++ CL
Sbjct: 202 LRAGASILTVHGRRREQKGHLTGLADWEMIRYLRDNLPPDTVIFANGNILQHEDIQKCLE 261
Query: 353 QTGVAGVMTAEGNLYNPALFT 373
TG GVM+AEGNL NP +F
Sbjct: 262 VTGADGVMSAEGNLSNPGIFA 282
>gi|330919514|ref|XP_003298646.1| hypothetical protein PTT_09419 [Pyrenophora teres f. teres 0-1]
gi|311328059|gb|EFQ93260.1| hypothetical protein PTT_09419 [Pyrenophora teres f. teres 0-1]
Length = 578
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 109/268 (40%), Positives = 153/268 (57%), Gaps = 35/268 (13%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADKKLR 193
R + +GSP+ +LAPMV+ SE WRLLSR + + L YTPM + F R
Sbjct: 29 RAFYESIGSPKLVLAPMVEQSEFAWRLLSRSFLPESQQKNLLAYTPMFHSKMFGEKSNYR 88
Query: 194 ----QEILMSTPE-----------------------DRPLIIQFCGNDSKNLTEAAKLAE 226
Q + + P DRPL +QFC ND ++ AAK
Sbjct: 89 DAHFQPLKSTVPSPVDDYHLSQLRDSDRHLDGNPAFDRPLTVQFCSNDPEDFLRAAKHVA 148
Query: 227 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNK 286
P CD +D+N+GCPQ +AKRG YGA+LQ+DW L+++++ L + + VPV+ K+R+ + K
Sbjct: 149 PFCDAVDLNLGCPQGIAKRGKYGAFLQEDWGLISSMIRKLHEELDVPVTAKMRVLETPEK 208
Query: 287 TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCL 344
T+ YA+ L AG ++ VHGR +Q+G NTGLA W+ I +R+ L + ANGNI
Sbjct: 209 TLAYAKTLLDAGASIITVHGRRREQKGHNTGLADWKMIRYLRENLPKETVIFANGNILQH 268
Query: 345 ADVEACLAQTGVAGVMTAEGNLYNPALF 372
D+ ACL TG GVM+AEGNLY+P +F
Sbjct: 269 EDIAACLEATGADGVMSAEGNLYDPTIF 296
>gi|295657937|ref|XP_002789532.1| tRNA-dihydrouridine synthase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283236|gb|EEH38802.1| tRNA-dihydrouridine synthase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 563
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 115/284 (40%), Positives = 155/284 (54%), Gaps = 40/284 (14%)
Query: 130 TPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSA 183
TP R + R + LGSP+ ILAPMVD SE WR+L+R + L Y+PM +
Sbjct: 2 TPRLRKKLFGREFYESLGSPKMILAPMVDRSEFAWRMLTRSFIDPQSPNPLLAYSPMFHS 61
Query: 184 HQFIADKKLRQEIL----------MSTPE----------------------DRPLIIQFC 211
F R + STP DRPLI+QFC
Sbjct: 62 RLFKESANYRLQHFEATRPKLNSKFSTPADGKEPQLPDSPVIPYLDGNPTIDRPLIVQFC 121
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND L AA+ EP CD +D+N+GCPQ +A++GHYGA+LQ++ L+ L+++L +
Sbjct: 122 ANDPDELLHAARTVEPFCDAVDLNLGCPQGIARKGHYGAFLQEEPELIYKLINTLHTELS 181
Query: 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL 331
+PV+ K RI + KT+EYARM+ AG ++VHGR DQ+G NTGLA W +I +R L
Sbjct: 182 IPVTAKFRIQETKEKTLEYARMILSAGASFISVHGRRRDQKGHNTGLADWSYIRYLRDNL 241
Query: 332 --TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ ANGNI D+ CL TG GVM+AEGNL +P +FT
Sbjct: 242 PADTVIFANGNILDNRDIMRCLEATGADGVMSAEGNLCDPTIFT 285
>gi|346327564|gb|EGX97160.1| tRNA-dihydrouridine synthase C [Cordyceps militaris CM01]
Length = 539
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 112/272 (41%), Positives = 160/272 (58%), Gaps = 26/272 (9%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSH------LCYTPMVSAHQFIADKKLR 193
R + +GSP++I+APMV+ SE WR+LSR + S L YTPM A F D K
Sbjct: 35 RAFYESIGSPKYIVAPMVNQSEFAWRMLSRSFLSADEKSKMLAYTPMFHARLFSQDPKYL 94
Query: 194 QEILMST-----------------PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINI 236
+ +T DRPL +QFC ND +L AA+ P+CD +D+N+
Sbjct: 95 KAHFQATRPGAASTDESRWLDGHPTHDRPLFVQFCANDPAHLLAAARQVAPYCDAVDLNL 154
Query: 237 GCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLER 296
GCPQ +A++GHYGA+LQ+D L+ L+ +L + VPVS KIR+ + +T+ YA+ + +
Sbjct: 155 GCPQGIARKGHYGAFLQEDQDLVFRLIRTLHTELSVPVSAKIRVLETKEQTLAYAQTVLK 214
Query: 297 AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQT 354
AG +L VHGR +Q+G TG+A W+ + +R +L + ANGN+ DV+ACLA T
Sbjct: 215 AGASILTVHGRRREQKGHLTGVADWQMLRFLRDSLPPETVLFANGNVLQHGDVDACLAAT 274
Query: 355 GVAGVMTAEGNLYNPALFTGQTRPAWELASEY 386
G GVM+AEGNL +PA+F + P E EY
Sbjct: 275 GFDGVMSAEGNLSDPAVFA-KPPPVGEEGREY 305
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 23/90 (25%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSH------LCYTPMVSAHQFIADKKLRQEI 126
+ +GSP++I+APMV+ SE WR+LSR + S L YTPM A F D K +
Sbjct: 38 YESIGSPKYIVAPMVNQSEFAWRMLSRSFLSADEKSKMLAYTPMFHARLFSQDPKYLKAH 97
Query: 127 LMST-----------------PEDRPLIIQ 139
+T DRPL +Q
Sbjct: 98 FQATRPGAASTDESRWLDGHPTHDRPLFVQ 127
>gi|402471223|gb|EJW05080.1| hypothetical protein EDEG_00861 [Edhazardia aedis USNM 41457]
Length = 555
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 122/343 (35%), Positives = 180/343 (52%), Gaps = 46/343 (13%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK----------L 122
+ P ILAPMV +L +RLL+++Y + +CYT MV QF+ K L
Sbjct: 4 FNNKKKPVMILAPMVSHCDLAYRLLAQKYNADICYTEMVHCKQFLLSKSNGKKNTWYETL 63
Query: 123 RQEILMSTPEDRPLIIQRTIFPRLGSPRFILAP----MVDASELPWRLLSRRYGS----- 173
+ T I+ F + A D+ +L + + + S
Sbjct: 64 KAPKNFVTDNKNVKIVN---FDSVVQTEDTFATNKNFKNDSCDLQYLKKTEEHNSVLNPI 120
Query: 174 ----HLCYTPMVSAHQF---IADKK----------------LRQEILMSTPE-DRPLIIQ 209
++ ++ H F I+ KK L E+ ++ D PL+IQ
Sbjct: 121 SENFYINNDKIIKKHNFEKEISVKKAISLTGNNDLEKKLDVLEDEVFFTSNLIDHPLVIQ 180
Query: 210 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
CGN+ + EAAK+ +P+ IDIN GCPQ VAKRG YG+YLQDD L ++ +L
Sbjct: 181 ICGNNPDIMLEAAKIMQPYASAIDINFGCPQGVAKRGFYGSYLQDDLKLTQKIIETLSLN 240
Query: 270 VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK 329
+ VP+ CK RI +++ T+ Y +M+E AGC+LLAVHGRT +Q+G++TGLA+W I ++++
Sbjct: 241 LNVPLFCKTRILLNLSDTLNYMKMIENAGCKLLAVHGRTREQKGISTGLANWSAIKSIKQ 300
Query: 330 ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
+ IPVIANGNI+ D+ CL T GVM AE +LYNP +F
Sbjct: 301 SANIPVIANGNIRNHHDIHECLNFTKCDGVMVAESHLYNPLIF 343
>gi|225677726|gb|EEH16010.1| tRNA-dihydrouridine synthase C [Paracoccidioides brasiliensis Pb03]
Length = 526
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 113/283 (39%), Positives = 156/283 (55%), Gaps = 39/283 (13%)
Query: 130 TPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSA 183
TP R ++ R + LGSP+ ILAPMVD SE WR+L+R + L Y+PM +
Sbjct: 2 TPRPRKKLLGREFYESLGSPKMILAPMVDRSEFAWRMLTRSFIDPQSSNPLLAYSPMFHS 61
Query: 184 HQFIADKKLR-QEILMSTPE------------------------------DRPLIIQFCG 212
F R Q + P+ DRPLI+QFC
Sbjct: 62 RLFNESANYRLQHFEATRPKPNSKISTADGKEPQLPDSPVIPYLDGNPTIDRPLIVQFCA 121
Query: 213 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV 272
ND L AA+ EP CD +D+N+GCPQ +A++GHYG++LQ++ L+ L+++L + +
Sbjct: 122 NDPDELLHAARTVEPFCDAVDLNLGCPQGIARKGHYGSFLQEEPELIYKLINTLHTQLSI 181
Query: 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL- 331
PV+ K RI + KT+EYARM+ AG ++VHGR DQ+G NTGLA W +I +R L
Sbjct: 182 PVTAKFRIQETKEKTLEYARMILSAGASFISVHGRRRDQKGHNTGLADWSYIRYLRDNLP 241
Query: 332 -TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ ANGNI D+ CL TG GVM+AEGNL +P +FT
Sbjct: 242 ADTVIFANGNILDHGDIIRCLEATGADGVMSAEGNLCDPTIFT 284
>gi|340520638|gb|EGR50874.1| hypothetical protein TRIREDRAFT_75921 [Trichoderma reesei QM6a]
Length = 564
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 113/269 (42%), Positives = 161/269 (59%), Gaps = 23/269 (8%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADKKLR 193
R + +GSP++I+APMVD SE WR+L+R + L YTPM+ A F D+K R
Sbjct: 25 RAFYESIGSPKYIVAPMVDQSEFAWRILTRSFLLPEEQSKLLAYTPMLHARLFSQDEKYR 84
Query: 194 -------------QEILMSTPE-DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCP 239
+ L P DRPL +QFC ND + L AAK P+CD +D+N+GCP
Sbjct: 85 RAHFQAVRPGSDGEPWLDGNPSIDRPLFVQFCANDPEALLAAAKHVVPYCDAVDLNLGCP 144
Query: 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC 299
Q +A++GHYGA+LQ+D L+ LV+ L + + +PV+ KIR+ + KT+EYA+ + +AG
Sbjct: 145 QGIARKGHYGAFLQEDQDLIFKLVNILHRELPIPVTAKIRVLETKEKTLEYAQNVLKAGA 204
Query: 300 QLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVA 357
+L VHGR +Q+G TG+A W+ I +R L + ANGNI D++ CL TG
Sbjct: 205 SILTVHGRRREQKGHLTGVADWDMIRFLRDNLPPETVLFANGNILQPGDLQRCLDATGAD 264
Query: 358 GVMTAEGNLYNPALFTGQTRPAWELASEY 386
G+M+AEGNL +P +F G P E + EY
Sbjct: 265 GIMSAEGNLSDPGIF-GNPPPIEEHSREY 292
>gi|76156585|gb|AAX27767.2| SJCHGC04037 protein [Schistosoma japonicum]
Length = 181
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 89/172 (51%), Positives = 125/172 (72%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLI 207
SP+++LAPMVD SEL WR+L R+YG L +TPM+++ F+ +KK R L EDRP+I
Sbjct: 9 SPKYVLAPMVDGSELAWRMLGRKYGVQLTFTPMINSTSFLVNKKYRHSCLQFASEDRPII 68
Query: 208 IQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
+QFC N + AKL +P CD +D+N+GCPQ +AK+GHYGA+LQD+W L +++S
Sbjct: 69 VQFCANSPDTFIKCAKLVQPFCDAVDLNLGCPQGIAKKGHYGAFLQDEWDCLKHIISRAS 128
Query: 268 QAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA 319
+ VPV+CKIRI+ DV++TV+YA++LE AG +L VHGRT + +G TGLA
Sbjct: 129 SELSVPVTCKIRIFSDVDRTVQYAKLLEAAGASMLTVHGRTREMKGQKTGLA 180
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 71 DAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
D+W SP+++LAPMVD SEL WR+L R+YG L +TPM+++ F+ +KK R L
Sbjct: 5 DSWK---SPKYVLAPMVDGSELAWRMLGRKYGVQLTFTPMINSTSFLVNKKYRHSCLQFA 61
Query: 131 PEDRPLIIQ 139
EDRP+I+Q
Sbjct: 62 SEDRPIIVQ 70
>gi|242208769|ref|XP_002470234.1| predicted protein [Postia placenta Mad-698-R]
gi|220730684|gb|EED84537.1| predicted protein [Postia placenta Mad-698-R]
Length = 260
Score = 214 bits (545), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 112/260 (43%), Positives = 156/260 (60%), Gaps = 6/260 (2%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL--MSTPEDRPLII 208
+I APMV+ S+LP+R L RRY + L YT M+ + + + D Q L + P DRP+++
Sbjct: 1 YIAAPMVNQSDLPFRRLVRRYNATLVYTQMLLSDRLLNDHDYLQFHLRGLGEPNDRPVVV 60
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVSSL 266
Q CGND + + A K + HCD ID N+GCPQ A+ HYGAYL Q+DWPL+ N+ +S+
Sbjct: 61 QLCGNDPELVVRAGKQVQSHCDAIDFNLGCPQEAARDAHYGAYLLGQNDWPLVENIAASM 120
Query: 267 RQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
++ VPVS K+R+ Q + T++ AR LE AG + +H RTV R G A E I
Sbjct: 121 SNSLTVPVSAKLRLCQPASATLDLARRLEHAGASWVTLHARTVSVRRRRQGAADLEQIKT 180
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEY 386
++ L+IPVI+NGN++ DVE LA TG G+M E L NP LF T ++ EY
Sbjct: 181 LKDNLSIPVISNGNVRVWEDVERNLALTGADGIMVGESLLANPCLFADITPDPVAISLEY 240
Query: 387 LDLVAQYP--VRLQYARGHV 404
LDL +YP +Q + HV
Sbjct: 241 LDLCREYPDTATMQTVQTHV 260
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL--MSTPEDRPLII 138
+I APMV+ S+LP+R L RRY + L YT M+ + + + D Q L + P DRP+++
Sbjct: 1 YIAAPMVNQSDLPFRRLVRRYNATLVYTQMLLSDRLLNDHDYLQFHLRGLGEPNDRPVVV 60
Query: 139 Q 139
Q
Sbjct: 61 Q 61
>gi|38196995|gb|AAH03659.2| DUS1L protein, partial [Homo sapiens]
Length = 299
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/215 (50%), Positives = 141/215 (65%), Gaps = 17/215 (7%)
Query: 274 VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTI 333
V+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G ASWEHI AVRKA+ I
Sbjct: 13 VTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAI 72
Query: 334 PVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQY 393
PV ANGNIQCL DVE CL TGV GVM+AEGNL+NPALF G++ WELA EYLD+V ++
Sbjct: 73 PVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELAEEYLDIVREH 132
Query: 394 PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF---IDYHEG 450
P L Y R H+F + HH TL + ++R + K ++ + L+ R I EG
Sbjct: 133 PCPLSYVRAHLFKLWHH--TLQVHQELREELAKVKTLEGIAAVSQELKLRCQEEISRQEG 190
Query: 451 RKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
K P + P WICQPY+RP P +
Sbjct: 191 AK--PTGDLPFH----------WICQPYIRPGPRE 213
>gi|406867259|gb|EKD20297.1| tRNA-dihydrouridine synthase C [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 696
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 155/290 (53%), Gaps = 44/290 (15%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSR------RYGSHLCYTPMVSAHQFIADKKLR 193
R + +GSP+F+LAPMVD SE WR+LSR R L YTPM+ A F K R
Sbjct: 77 RAFYESIGSPKFVLAPMVDQSEFAWRMLSRSFIPGDRQRDLLAYTPMLHARLFCETPKFR 136
Query: 194 -----------------------------------QEILMSTPEDRPLIIQFCGNDSKNL 218
+ L P DRPL +QFC N+ L
Sbjct: 137 DAHFQPLRTSLVSCGGGDGAGEGEQQQEEVEGKEKKAFLDGNPADRPLFVQFCANNPDEL 196
Query: 219 TEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI 278
+AA P CD +D+N+GCPQ +A++G YGA+LQ+D L+ +L++ L + VPV+ KI
Sbjct: 197 LKAATYVAPFCDAVDLNLGCPQGIARKGRYGAFLQEDQELIYSLINKLHLGLDVPVTAKI 256
Query: 279 RIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI-- 336
RI KT+ YA+ + AG +L VHGRT + +G TGLA W+ I +R++L +
Sbjct: 257 RILDTKEKTLAYAQKVLEAGASILTVHGRTREMKGHKTGLADWKMIRFLRESLPKETVLF 316
Query: 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEY 386
ANGNI D+E CL +TG VM+AEGNLY+PA+F P E EY
Sbjct: 317 ANGNILRKEDIERCLEETGADAVMSAEGNLYDPAIFA-DAPPVGEEGREY 365
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSR------RYGSHLCYTPMVSAHQFIADKKLR 123
+ +GSP+F+LAPMVD SE WR+LSR R L YTPM+ A F K R
Sbjct: 80 YESIGSPKFVLAPMVDQSEFAWRMLSRSFIPGDRQRDLLAYTPMLHARLFCETPKFR 136
>gi|189208310|ref|XP_001940488.1| tRNA-dihydrouridine synthase C [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976581|gb|EDU43207.1| tRNA-dihydrouridine synthase C [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 801
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/269 (40%), Positives = 150/269 (55%), Gaps = 35/269 (13%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADKKLR 193
R + +GSP+ +LAPMV+ SE WRLLSR + + L YTPM + F R
Sbjct: 36 RAFYESIGSPKLVLAPMVEQSEFAWRLLSRSFLPESQQKNLLAYTPMFHSKMFGEKSNYR 95
Query: 194 ----QEILMSTPE-----------------------DRPLIIQFCGNDSKNLTEAAKLAE 226
Q + + P DRPL +QFC ND + AAK
Sbjct: 96 DAHFQPLKSTVPSPIDDYHLSQLRDSDRHLDGNPVFDRPLTVQFCSNDPDDFLRAAKHVA 155
Query: 227 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNK 286
P CD +D+N+GCPQ +AKRG YGA+LQ+DW L++ ++ L + + VPV+ K+R+ + K
Sbjct: 156 PFCDAVDLNLGCPQGIAKRGKYGAFLQEDWDLISRMIRKLHEELDVPVTAKMRVLETPEK 215
Query: 287 TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCL 344
T+ YA+ L AG ++ VHGR +Q+G NTGLA W+ I +R+ L + ANGNI
Sbjct: 216 TLAYAKTLLDAGASIITVHGRRREQKGHNTGLADWKMIRHLRENLPKETVIFANGNILQH 275
Query: 345 ADVEACLAQTGVAGVMTAEGNLYNPALFT 373
D+ CL TG GVM+AEGNLY+P +F
Sbjct: 276 EDIAKCLEATGADGVMSAEGNLYDPTIFA 304
>gi|226295110|gb|EEH50530.1| tRNA-dihydrouridine synthase [Paracoccidioides brasiliensis Pb18]
Length = 556
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 113/283 (39%), Positives = 155/283 (54%), Gaps = 39/283 (13%)
Query: 130 TPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSA 183
TP R ++ R + LGSP+ ILAPMVD SE WR+L+R + L Y+PM +
Sbjct: 2 TPRPRKKLLGREFYESLGSPKMILAPMVDRSEFAWRMLTRSFIDPQSPNPLLAYSPMFHS 61
Query: 184 HQFIADKKLR-QEILMSTPE------------------------------DRPLIIQFCG 212
F R Q + P+ DRPLI+QFC
Sbjct: 62 RLFNESANYRLQHFEATRPKPNSKISTADGKEPQLPDSPVIPYLDGNPTIDRPLIVQFCA 121
Query: 213 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV 272
ND L AA+ EP CD +D+N+GCPQ +A++GHYG++LQ++ L+ L++ L + +
Sbjct: 122 NDPDELLHAARTVEPFCDAVDLNLGCPQGIARKGHYGSFLQEEPELIYKLINILHTHLSI 181
Query: 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL- 331
PV+ K RI + KT+EYARM+ AG ++VHGR DQ+G NTGLA W +I +R L
Sbjct: 182 PVTAKFRIQETKEKTLEYARMILSAGASFISVHGRRRDQKGHNTGLADWSYIRYLRDNLP 241
Query: 332 -TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ ANGNI D+ CL TG GVM+AEGNL +P +FT
Sbjct: 242 ADTVIFANGNILDHGDIIRCLEATGADGVMSAEGNLCDPTIFT 284
>gi|154282457|ref|XP_001542024.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150410204|gb|EDN05592.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 584
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 110/279 (39%), Positives = 156/279 (55%), Gaps = 41/279 (14%)
Query: 137 IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSH-------LCYTPMVSAHQFIAD 189
+ R + LGSP ILAPMVD SE WR+L+R + + L Y+PM + F
Sbjct: 10 LFGREFYKSLGSPSMILAPMVDRSEFAWRMLTRSFMNPDSDSPPLLAYSPMFHSRLFKES 69
Query: 190 KKLR-------------------QEILMSTPE-------------DRPLIIQFCGNDSKN 217
R +I P+ DRPLI+QFC N+ +
Sbjct: 70 PNYRLQHFEATRPRSKTHNPPAANDIDGGAPQSNTIPYLDGNPSFDRPLIVQFCANNPDD 129
Query: 218 LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCK 277
L +AA+ EP CD +D+N+GCPQ +A++GHYGA+LQ+ L+ L+++L + +PV+ K
Sbjct: 130 LLQAARAVEPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYELINTLHTQLSIPVTAK 189
Query: 278 IRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPV 335
RI + KT+EYARM+ AG ++ VHGR +Q+G NTGLA W +I +R+ L +
Sbjct: 190 FRIQETKEKTLEYARMILSAGASIITVHGRRREQKGHNTGLADWSYIRYLRENLPADTVI 249
Query: 336 IANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG 374
ANGNI D+E CL TG GVM+AEGNL +P +F+G
Sbjct: 250 FANGNILNHGDIEKCLEATGADGVMSAEGNLCDPTIFSG 288
>gi|261330856|emb|CBH13841.1| tRNA-dihydrouridine synthase 1, putative [Trypanosoma brucei
gambiense DAL972]
Length = 520
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 167/332 (50%), Gaps = 66/332 (19%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP--- 201
R +P +++ PMVD SELP+RLL RRYG+ L YTPM A F RQ +T
Sbjct: 69 RKRTPMYVVGPMVDQSELPFRLLCRRYGATLAYTPMFHAKSFAQSAHYRQRYFSTTTFPP 128
Query: 202 -----------------------EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGC 238
D PL QFCGND + + AA+ E +C+ +D NIGC
Sbjct: 129 HSAMESGGNVAANDSTSNDGALDNDHPLFAQFCGNDPETILAAARHVEDYCEAVDFNIGC 188
Query: 239 PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAG 298
PQ +A+RGHYG++L +DW LL N++ +L ++VPV+ K+RI+ D T++YA ML G
Sbjct: 189 PQGIARRGHYGSFLMEDWELLHNILHALAVELRVPVTAKMRIFDDEALTLKYAEMLRDTG 248
Query: 299 CQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGV 356
+L VHGRT + +G A I V + L +IP+IANGN+ DV LA TG
Sbjct: 249 IYVLCVHGRTRENKGQQQQPADLRMIRRVHEHLRGSIPIIANGNVLTFEDVPRNLAITGC 308
Query: 357 AGVMTAEGNLYNPALFT----------------------------------GQTRP---- 378
G M AE L++P LF ++RP
Sbjct: 309 EGYMCAEPLLWDPKLFAPLASSSTAEFAPNITDSTLSTSPAPSTVRSGRLFAESRPTRLK 368
Query: 379 AWELASEYLDLVAQYPVRLQYARGHVFNMCHH 410
A ASEYL+LV ++PV + + + H F M +H
Sbjct: 369 ALATASEYLELVRRFPVDIGFVKAHFFKMLYH 400
>gi|355685038|gb|AER97599.1| dihydrouridine synthase 1-like protein [Mustela putorius furo]
Length = 342
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 110/218 (50%), Positives = 142/218 (65%), Gaps = 9/218 (4%)
Query: 268 QAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
+ + VPV+CKIR++ +++KTV+YA+MLE+AGCQLL VHGRT +Q+G +G ASWEHI AV
Sbjct: 5 EKLAVPVTCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWEHIKAV 64
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYL 387
RKA+ IPV ANGNIQCL DVE C+ TGV GVM+AEGNL+NPALF G++ WELA EYL
Sbjct: 65 RKAVAIPVFANGNIQCLRDVERCIRDTGVQGVMSAEGNLHNPALFEGRSPAVWELAEEYL 124
Query: 388 DLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFIDY 447
D+V Q+P L R H+F + HH TL + +R + K +K L A + RE +
Sbjct: 125 DIVRQHPCPLSCVRAHLFKLWHH--TLQVHQQLREELAK---VKTLEAAAAVSRELKLRC 179
Query: 448 HEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
E P L WICQPY+RP P +
Sbjct: 180 QEDISRQKEGEKPSG----GLPFFHWICQPYLRPGPRE 213
>gi|72393571|ref|XP_847586.1| tRNA-dihydrouridine synthase 1 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62176372|gb|AAX70483.1| tRNA-dihydrouridine synthase 1, putative [Trypanosoma brucei]
gi|70803616|gb|AAZ13520.1| tRNA-dihydrouridine synthase 1, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 520
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 121/332 (36%), Positives = 167/332 (50%), Gaps = 66/332 (19%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP--- 201
R +P +++ PMVD SELP+RLL RRYG+ L YTPM A F RQ +T
Sbjct: 69 RKRTPMYVVGPMVDQSELPFRLLCRRYGATLAYTPMFHAKSFAQSAHYRQRYFSTTTFPP 128
Query: 202 -----------------------EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGC 238
D PL QFCGND + + AA+ E +C+ +D NIGC
Sbjct: 129 HSAMESGGNVAANDSTSNDGALDNDHPLFAQFCGNDPETVLAAARHVEDYCEAVDFNIGC 188
Query: 239 PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAG 298
PQ +A+RGHYG++L +DW LL N++ +L ++VPV+ K+RI+ D T++YA ML G
Sbjct: 189 PQGIARRGHYGSFLMEDWELLHNILHALAVELRVPVTAKMRIFDDEALTLKYAEMLRDTG 248
Query: 299 CQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGV 356
+L VHGRT + +G A I V + L +IP+IANGN+ DV LA TG
Sbjct: 249 IYVLCVHGRTRENKGQQQQPADLRMIRRVHEHLRGSIPIIANGNVLTFEDVPRNLAITGC 308
Query: 357 AGVMTAEGNLYNPALFT----------------------------------GQTRP---- 378
G M AE L++P LF ++RP
Sbjct: 309 EGYMCAEPLLWDPKLFAPLASSSTAEFAPNITDSTLSTSPAPSTVRSGRLFAESRPTRLK 368
Query: 379 AWELASEYLDLVAQYPVRLQYARGHVFNMCHH 410
A ASEYL+LV ++PV + + + H F M +H
Sbjct: 369 ALATASEYLELVRRFPVDIGFVKAHFFKMLYH 400
>gi|396466196|ref|XP_003837636.1| hypothetical protein LEMA_P123440.1 [Leptosphaeria maculans JN3]
gi|312214198|emb|CBX94192.1| hypothetical protein LEMA_P123440.1 [Leptosphaeria maculans JN3]
Length = 623
Score = 211 bits (536), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 111/269 (41%), Positives = 148/269 (55%), Gaps = 35/269 (13%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADKKLR 193
R + +GSP+ +LAPMV+ SE WRLLSR + + L YTPM + F + K R
Sbjct: 29 RAFYESIGSPKLVLAPMVEQSEFAWRLLSRSFLPPAQQRNLLAYTPMFHSKMFGKESKYR 88
Query: 194 --------------------------QEILMSTPE-DRPLIIQFCGNDSKNLTEAAKLAE 226
Q L P DRPL +QFC ND +L AAK
Sbjct: 89 DAHFQPLKSTILSPTDSHHLSTLDESQRYLDGNPAFDRPLTVQFCSNDPDDLLAAAKHVA 148
Query: 227 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNK 286
P CD +D+N+GCPQ +AKRG YGA+LQ+DW L+ ++ + + VP++ K+RI + K
Sbjct: 149 PFCDAVDLNLGCPQGIAKRGKYGAFLQEDWDLIARMIRKCHEELDVPITAKMRILETREK 208
Query: 287 TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI--ANGNIQCL 344
T+EYA+ L AG +L VHGR +Q+G NTGLA W I +R L + ANGNI
Sbjct: 209 TLEYAKTLLDAGASILTVHGRQREQKGHNTGLADWTVIRYLRDNLPKDTVLFANGNILQH 268
Query: 345 ADVEACLAQTGVAGVMTAEGNLYNPALFT 373
D+ CL TG VM+AEGNLY+P +F
Sbjct: 269 DDIATCLRATGADAVMSAEGNLYDPTIFA 297
>gi|71032309|ref|XP_765796.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352753|gb|EAN33513.1| hypothetical protein, conserved [Theileria parva]
Length = 327
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/308 (36%), Positives = 169/308 (54%), Gaps = 6/308 (1%)
Query: 141 TIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 200
+ + + SP+FI+APMVD SELP+RLL RRY + L YTPM+ A F ++ R ++
Sbjct: 18 SFWKSINSPKFIVAPMVDQSELPFRLLCRRYSADLAYTPMLHAKIFSENENYRNIHFHTS 77
Query: 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
+D+PLI QFCGND A+ + IDIN+GCPQ +A++G YG++L + L+
Sbjct: 78 SDDKPLIAQFCGNDPNAFILASSYIKNDVSAIDINLGCPQGIARKGRYGSFLLEYPQLIN 137
Query: 261 NLVSSLRQAVQVPVSCKIR-IYQD-VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL 318
+V SL Q + V+CKIR + +D + T+ LE +GC+ L VHGR +
Sbjct: 138 EIVRSLTQ-TGINVTCKIRKVEKDCLQSTLNLCYSLEASGCKALTVHGRHRSETKTRISE 196
Query: 319 ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRP 378
W+ I ++ + IPVIANG I+ DV+ CL TG VM++E L NP LF+G+
Sbjct: 197 CDWDSIKIIKSKVNIPVIANGGIETFEDVKRCLEYTGADAVMSSEAILENPYLFSGKIYN 256
Query: 379 AWELASEYLDLVAQYP-VRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAV 437
++ EYL ++ P ++ +GH F + + + ++ D+R + N IK
Sbjct: 257 NIDIFEEYLSILKGSPRQKISCIKGHAFKILYKYIN--QHHDIRTAISNANTIKKFENKR 314
Query: 438 DMLRERFI 445
FI
Sbjct: 315 SFKDNTFI 322
Score = 76.3 bits (186), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 99/235 (42%), Gaps = 38/235 (16%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
W + SP+FI+APMVD SELP+RLL RRY + L YTPM+ A F ++ R ++ +
Sbjct: 20 WKSINSPKFIVAPMVDQSELPFRLLCRRYSADLAYTPMLHAKIFSENENYRNIHFHTSSD 79
Query: 133 DRPLIIQRTIFPRLGSPRFILAPMV---DASELPWRLLSRRYGSHLCYTPMVSAHQFIAD 189
D+PLI Q F FILA D S + L Q IA
Sbjct: 80 DKPLIAQ---FCGNDPNAFILASSYIKNDVSAIDINL---------------GCPQGIAR 121
Query: 190 KKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINI-------GCPQMV 242
K L+ P+ I++ N+T + E C +N+ GC +
Sbjct: 122 KGRYGSFLLEYPQLINEIVRSLTQTGINVTCKIRKVEKDCLQSTLNLCYSLEASGCKALT 181
Query: 243 AKRGHYGA----YLQDDWPLLTNLVSSLRQAVQVPV--SCKIRIYQDVNKTVEYA 291
H + DW + + ++ V +PV + I ++DV + +EY
Sbjct: 182 VHGRHRSETKTRISECDW----DSIKIIKSKVNIPVIANGGIETFEDVKRCLEYT 232
>gi|290991278|ref|XP_002678262.1| predicted protein [Naegleria gruberi]
gi|284091874|gb|EFC45518.1| predicted protein [Naegleria gruberi]
Length = 292
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/274 (40%), Positives = 162/274 (59%), Gaps = 7/274 (2%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
+GSP+ ++APMVD SEL +RLL++ +GS L YTPM F+ D+ ++ + P
Sbjct: 9 IGSPKHVVAPMVDQSELAFRLLAQNHGSTLAYTPMFHGRIFVQDETYQKTHFQFLESEGP 68
Query: 206 LIIQFCGNDSKNLTE----AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTN 261
+ QFC ND E A +L+ +D+N+GCPQ +AK+G YG+YL +D L+ +
Sbjct: 69 VFAQFCANDPNIFVECGWLAWELSNQKIAAVDLNLGCPQRIAKKGRYGSYLMEDIDLICS 128
Query: 262 LVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
++ + + VPV+ KIRI++D T++Y + AG Q+L VHGRT DQRG N A W
Sbjct: 129 MIEKAHKELPVPVTAKIRIFEDAEHTLKYVDRILEAGAQVLCVHGRTRDQRGHNQNYADW 188
Query: 322 EHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT-GQTRPA 379
+ I +R+ + IPVIANGNI+ DV CL TG VM+A+ L NPALF GQ
Sbjct: 189 KMIKLIREHVPHIPVIANGNIRMYQDVIDCLEFTGADAVMSADPLLCNPALFNGGQHVNG 248
Query: 380 WELASEYLDLVAQY-PVRLQYARGHVFNMCHHLL 412
+L EY+++ +Y P + + H+F M H L
Sbjct: 249 IDLCEEYINICEKYPPPDHSFIKRHLFQMLDHTL 282
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 104/236 (44%), Gaps = 32/236 (13%)
Query: 71 DAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
+ W +GSP+ ++APMVD SEL +RLL++ +GS L YTPM F+ D+ ++
Sbjct: 4 EFWKSIGSPKHVVAPMVDQSELAFRLLAQNHGSTLAYTPMFHGRIFVQDETYQKTHFQFL 63
Query: 131 PEDRPLIIQR-----TIFPRLGSPRFILAPM-VDASEL----PWRLLSR-RYGSHLCYTP 179
+ P+ Q IF G + L+ + A +L P R+ + RYGS+L
Sbjct: 64 ESEGPVFAQFCANDPNIFVECGWLAWELSNQKIAAVDLNLGCPQRIAKKGRYGSYL---- 119
Query: 180 MVSAHQFIADKKLRQEILMSTPEDRPL----IIQFCGNDSKNLTEAAKLAEPHCDGIDIN 235
+ D L ++ ++ P+ I+ + L ++ E G +
Sbjct: 120 -------MEDIDLICSMIEKAHKELPVPVTAKIRIFEDAEHTLKYVDRILEA---GAQVL 169
Query: 236 IGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYA 291
+ +RGH Y DW ++ L+ + V + IR+YQDV +E+
Sbjct: 170 CVHGRTRDQRGHNQNYA--DWKMI-KLIREHVPHIPVIANGNIRMYQDVIDCLEFT 222
>gi|402086955|gb|EJT81853.1| hypothetical protein GGTG_01827 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 562
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/261 (41%), Positives = 151/261 (57%), Gaps = 25/261 (9%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADKKLR 193
R + +GSP++I+APMVD SE WR+L+R + + L YTPM+ A F + R
Sbjct: 22 RAFYESIGSPKYIVAPMVDQSEFAWRMLTRSFMPKSEQSNLLAYTPMLHARLFGETQAYR 81
Query: 194 QEILMSTPE-----------------DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINI 236
+T DRPL +QFC N+ L +AA+ PHCD +D+N+
Sbjct: 82 DSHFQATRPGADAEPPTPWLDGNPAIDRPLFVQFCANEPAALLDAARRVAPHCDAVDLNL 141
Query: 237 GCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLER 296
GCPQ +AK+G YGA+LQ+D L+ L+ +L + + VPV+ KIRI T+ YAR +
Sbjct: 142 GCPQGIAKKGRYGAFLQEDQALIHRLIRTLHEELPVPVTAKIRILDTPEATLAYARNVLD 201
Query: 297 AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQT 354
AG +L VHGR +Q+G TG+A W I +R L + ANGN+ DVEACLA T
Sbjct: 202 AGASILTVHGRRREQKGHLTGVADWAAIRRLRDELPPDTVLFANGNVLQRGDVEACLAAT 261
Query: 355 GVAGVMTAEGNLYNPALFTGQ 375
G GVM+AEGNL +P++F +
Sbjct: 262 GADGVMSAEGNLSDPSIFAAE 282
>gi|294886251|ref|XP_002771632.1| Dus1p, putative [Perkinsus marinus ATCC 50983]
gi|239875338|gb|EER03448.1| Dus1p, putative [Perkinsus marinus ATCC 50983]
Length = 720
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 140/427 (32%), Positives = 207/427 (48%), Gaps = 54/427 (12%)
Query: 55 GTNVVPKDCHSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSR--------------- 99
G NVV H + SD + I +VDA E+ SR
Sbjct: 208 GLNVVGVSFHVGSGCSDVHS-------ITKALVDAREVFDAAASRFGMKLSILDIGGGFQ 260
Query: 100 ---RYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIF---PRLGSPRFIL 153
R GS L + M + + D L P++ +I + + +GSPR++
Sbjct: 261 GVDREGSPLNFKSMATVVNSLLD------TLFPDPDEVRIIAEPGRYEWWKSIGSPRYVT 314
Query: 154 APMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGN 213
APMVD SEL +R+++R+YG+ CYTPM+ A F KK R++ + P D PL QFCG+
Sbjct: 315 APMVDQSELAFRMMTRKYGAQFCYTPMMHAKSFATSKKYREKNFETAPGDSPLAAQFCGD 374
Query: 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVP 273
D + EAAK E ID+N+GCPQ +A+RGHYG++L ++ L+ +V + + ++ P
Sbjct: 375 DGDVIVEAAKHIEDQVSCIDLNLGCPQGIARRGHYGSFLLEEPELVLRIVEKMVKGIKCP 434
Query: 274 VSCKIRIYQ----------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
VS KIR+ DV T E+ + L+ G L+A+H RT + +G T W+
Sbjct: 435 VSVKIRLMTAKDDDGSGRPDVAATKEFVKRLDSLGVDLIALHPRTKEWKGQLTQACWWQA 494
Query: 324 ITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR--PAW 380
VR + IP I NG I C DVE C T VM++E L P LF G + PA
Sbjct: 495 AAEVRACVPDIPFIVNGGISCFEDVEKCFEVTKCDAVMSSECILEVPTLFRGPEKDGPAL 554
Query: 381 ---ELASEYLDLVAQYPVRL--QYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRK 435
EL EY+ YP + + H F M + L + +VR +G + ++++
Sbjct: 555 SQCELVEEYIKFARMYPHTAPPRCVKSHAFRMLY--APLQKFIEVREKLGGSRSVEEISV 612
Query: 436 AVDMLRE 442
AV+ L E
Sbjct: 613 AVETLDE 619
>gi|389632377|ref|XP_003713841.1| tRNA-dihydrouridine synthase 1 [Magnaporthe oryzae 70-15]
gi|351646174|gb|EHA54034.1| tRNA-dihydrouridine synthase 1 [Magnaporthe oryzae 70-15]
gi|440473368|gb|ELQ42171.1| tRNA-dihydrouridine synthase 1 [Magnaporthe oryzae Y34]
gi|440489410|gb|ELQ69066.1| tRNA-dihydrouridine synthase 1 [Magnaporthe oryzae P131]
Length = 614
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 112/280 (40%), Positives = 155/280 (55%), Gaps = 28/280 (10%)
Query: 134 RPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFI 187
+P + R + +GSP+F++APMVD SE WR+L+R + + L YTPM A F
Sbjct: 23 KPKLHGRAFYESIGSPKFVVAPMVDQSEFAWRMLTRSFMPESQRSTVLGYTPMFHARLFG 82
Query: 188 ADKKLRQEILMS------TPE-------------DRPLIIQFCGNDSKNLTEAAKLAEPH 228
+ R + +P+ DRPL +QFC ND L EAAK P+
Sbjct: 83 ENPSYRDSHFQAIRKDAASPDAQPTPWLDGNPAIDRPLFVQFCANDPSALLEAAKHVAPY 142
Query: 229 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTV 288
CD +D+N+GCPQ +A++GHYGA+LQ+D L+ L+ L + +PV+ KIRI T+
Sbjct: 143 CDAVDLNLGCPQGIARKGHYGAFLQEDQELIHKLIRQLHDGLSIPVTAKIRILDTPEATL 202
Query: 289 EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLAD 346
YAR + AG +L VHGR +Q+G TG+A W I +R+ L + ANGNI D
Sbjct: 203 AYARNVLDAGASILTVHGRRREQKGHLTGVADWSAIRHLRENLPPETVIFANGNILQRGD 262
Query: 347 VEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEY 386
+E CL TG VM+AEGNL +P LF + P E EY
Sbjct: 263 LERCLEATGADAVMSAEGNLSDPTLFAPEP-PVGEEGREY 301
>gi|320036772|gb|EFW18710.1| dihydrouridine synthase [Coccidioides posadasii str. Silveira]
Length = 538
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 110/276 (39%), Positives = 155/276 (56%), Gaps = 30/276 (10%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSH------LCYTPMVSAHQFIADKKLR 193
R + LGSP+ I+APMVD SE WR+L+R + L Y+PM+ A F R
Sbjct: 24 REFYQSLGSPKMIVAPMVDRSEFAWRMLTRSFMKDNSPNPLLAYSPMLHARLFKDRAGYR 83
Query: 194 QE--------------------ILMSTPE-DRPLIIQFCGNDSKNLTEAAKLAEPHCDGI 232
+ L P DRPLI+QFC ND L EAA+ + +CD +
Sbjct: 84 SQHFEPVRPKADAVETSADPVPFLDGNPAIDRPLIVQFCANDPDELLEAARHVQQYCDAV 143
Query: 233 DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYAR 292
D+N+GCPQ +AK+G YGA+LQ++ L+ L++ L + +PV+ K RI + KT+EYA+
Sbjct: 144 DLNLGCPQGIAKKGRYGAFLQEEPDLIYRLINKLHTGLSIPVTAKFRILETKEKTLEYAK 203
Query: 293 MLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEAC 350
M+ AG + VHGR +Q+G NTG+A W +I +R L + ANGNI D++ C
Sbjct: 204 MILSAGASFITVHGRRREQKGHNTGVADWSYIRYLRDNLPPDTVIFANGNILNHDDIQKC 263
Query: 351 LAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEY 386
L TG GVM+AEGNL +P +F+ + P E EY
Sbjct: 264 LDATGADGVMSAEGNLSDPTIFS-EPPPVGEEGCEY 298
>gi|303318106|ref|XP_003069055.1| Dihydrouridine synthase family protein [Coccidioides posadasii C735
delta SOWgp]
gi|240108736|gb|EER26910.1| Dihydrouridine synthase family protein [Coccidioides posadasii C735
delta SOWgp]
Length = 538
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 110/279 (39%), Positives = 156/279 (55%), Gaps = 30/279 (10%)
Query: 137 IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSH------LCYTPMVSAHQFIADK 190
+ R + LGSP+ I+APMVD SE WR+L+R + L Y+PM+ A F
Sbjct: 21 LTGREFYQSLGSPKMIVAPMVDRSEFAWRMLTRSFMKDNSPNPLLAYSPMLHARLFKDRA 80
Query: 191 KLRQE--------------------ILMSTPE-DRPLIIQFCGNDSKNLTEAAKLAEPHC 229
R + L P DRPLI+QFC ND L EAA+ + +C
Sbjct: 81 GYRSQHFEPVRPKADAVETSADTVPFLDGNPAIDRPLIVQFCANDPDELLEAARHVQQYC 140
Query: 230 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVE 289
D +D+N+GCPQ +AK+G YGA+LQ++ L+ L++ L + +PV+ K RI + KT+E
Sbjct: 141 DAVDLNLGCPQGIAKKGRYGAFLQEEPDLIYRLINKLHTGLSIPVTAKFRILETKEKTLE 200
Query: 290 YARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADV 347
YA+M+ AG + VHGR +Q+G NTG+A W +I +R L + ANGNI D+
Sbjct: 201 YAKMILSAGASFITVHGRRREQKGHNTGVADWSYIRYLRDNLPPDTVIFANGNILNHDDI 260
Query: 348 EACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEY 386
+ CL TG GVM+AEGNL +P +F+ + P E EY
Sbjct: 261 QKCLDATGADGVMSAEGNLSDPTIFS-EPPPVGEEGCEY 298
>gi|71402428|ref|XP_804129.1| dihydrouridine synthase (Dus) [Trypanosoma cruzi strain CL Brener]
gi|70866933|gb|EAN82278.1| dihydrouridine synthase (Dus), putative [Trypanosoma cruzi]
Length = 547
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 116/309 (37%), Positives = 161/309 (52%), Gaps = 50/309 (16%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE------ 202
P +++ PMVD SELP+R+L RRYG+ L Y+PM+ A F + R +TP
Sbjct: 95 PMYVVGPMVDQSELPFRMLCRRYGATLAYSPMLHARSFAQSAQYRARYFSTTPHRAEPAM 154
Query: 203 -----------------------DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCP 239
D PL +QFCGND+ L AA+ E C+ +D+N+GCP
Sbjct: 155 TATVSGEGEAAEDAGRTSDGKETDHPLFVQFCGNDADTLLAAARHVEDDCEAVDVNLGCP 214
Query: 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC 299
Q +A+RGHYG++L +DW + N++ L ++VPV+ K+R++ D T++YA ML G
Sbjct: 215 QGIARRGHYGSFLMEDWDRVHNILHCLAVELRVPVTAKMRVFDDDALTLKYAEMLRDTGI 274
Query: 300 QLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVA 357
+L VHGRT R GLA E I VR+ L +IPVI NGN+ DV ++ T
Sbjct: 275 AVLCVHGRT---RHNKRGLADMEKIRRVREHLRGSIPVIGNGNVLTFEDVRRNMSVTMTD 331
Query: 358 GVMTAEGNLYNPALFTGQTRP----------------AWELASEYLDLVAQYPVRLQYAR 401
G M AE L++P LF P A A EYL LV +YPV L + +
Sbjct: 332 GYMCAEPLLWDPRLFAAPLHPVRNGRCFAECCEARLDAIRTAQEYLQLVQRYPVDLAFVK 391
Query: 402 GHVFNMCHH 410
H+F M H
Sbjct: 392 AHLFKMLFH 400
>gi|119185991|ref|XP_001243602.1| hypothetical protein CIMG_03043 [Coccidioides immitis RS]
gi|392870306|gb|EJB11997.1| dihydrouridine synthase [Coccidioides immitis RS]
Length = 538
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 110/276 (39%), Positives = 155/276 (56%), Gaps = 30/276 (10%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSH------LCYTPMVSAHQFIADKKLR 193
R + LGSP+ I+APMVD SE WR+L+R + L Y+PM+ A F R
Sbjct: 24 REFYQSLGSPKMIVAPMVDRSEFAWRMLTRSFMKDNSRNPLLAYSPMLHARLFKDRAGYR 83
Query: 194 QE--------------------ILMSTPE-DRPLIIQFCGNDSKNLTEAAKLAEPHCDGI 232
+ L P DRPLI+QFC ND L EAA+ + +CD +
Sbjct: 84 SQHFEPVRPKADAVETSADTVPFLDGNPAIDRPLIVQFCANDPDELLEAARHVQQYCDAV 143
Query: 233 DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYAR 292
D+N+GCPQ +AK+G YGA+LQ++ L+ L++ L + +PV+ K RI + KT+EYA+
Sbjct: 144 DLNLGCPQGIAKKGRYGAFLQEEPDLIYRLINKLHTGLSIPVTAKFRILETKEKTLEYAK 203
Query: 293 MLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEAC 350
M+ AG + VHGR +Q+G NTG+A W +I +R L + ANGNI D++ C
Sbjct: 204 MILSAGASFITVHGRRREQKGHNTGVADWSYIRYLRDNLPPDTVIFANGNILNHDDIQKC 263
Query: 351 LAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEY 386
L TG GVM+AEGNL +P +F+ + P E EY
Sbjct: 264 LDATGADGVMSAEGNLSDPTIFS-EPPPVGEEGCEY 298
>gi|403220648|dbj|BAM38781.1| uncharacterized protein TOT_010001229 [Theileria orientalis strain
Shintoku]
Length = 381
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 172/316 (54%), Gaps = 18/316 (5%)
Query: 141 TIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 200
+ + L SP++++APMVD SELP+RLL RRY +HL YTPM+ A F ++ R ++
Sbjct: 18 SFWESLNSPKYVVAPMVDQSELPFRLLCRRYSAHLAYTPMLHAKIFSENENYRNVHFHTS 77
Query: 201 PEDRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 259
+D+PLI QFC GND K A+ + IDIN+GCPQ +A++G YG++L D L+
Sbjct: 78 SDDKPLIAQFCAGNDPKTFVLASSFIKDDVSAIDINLGCPQGIARKGKYGSFLLDYPDLI 137
Query: 260 TNLVSSLRQAVQVPVSCKIRIYQ--DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
+V L ++ V V+CKIR + + T+ LE +GC+ L VHGR ++ +N
Sbjct: 138 NEIVRRLTES-GVNVTCKIRKVEKDSLQSTLNLCYSLEASGCKALTVHGRHRSEKSVNIR 196
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVA-----------GVMTAEGNL 366
WE I ++ + IPVIANG I+ DV+ CL TG VM++E L
Sbjct: 197 ECDWESIRIIKSRVNIPVIANGGIENFEDVQRCLDYTGFVKQQHRLAFRADAVMSSEAIL 256
Query: 367 YNPALFTGQTRPAWELASEYLDLVAQYP-VRLQYARGHVFNMCHHLLTLPENSDVRLLVG 425
NP LF+G+ ++ EYL ++ + P +L +GH F M + + D+R +
Sbjct: 257 ENPYLFSGRQYNNIDVFEEYLSILKESPRQKLSCVKGHAFKMLYRYAR--RHHDIRDAIS 314
Query: 426 KTNHIKDLRKAVDMLR 441
IK V+ LR
Sbjct: 315 NATSIKKFESIVEDLR 330
>gi|294937192|ref|XP_002782004.1| Dus1p, putative [Perkinsus marinus ATCC 50983]
gi|239893217|gb|EER13799.1| Dus1p, putative [Perkinsus marinus ATCC 50983]
Length = 438
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 171/315 (54%), Gaps = 20/315 (6%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
+GSPR++ APMVD SEL +R+++R+YG+ CYTPM+ A F KK R++ + P D P
Sbjct: 25 IGSPRYVTAPMVDQSELAFRMMTRKYGAQFCYTPMMHAKSFATSKKYREKNFETAPGDSP 84
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
L QFCG+D + EAAK E ID+N+GCPQ +A+RGHYG++L ++ L+ +V
Sbjct: 85 LAAQFCGDDGDVIVEAAKHIEDQVSCIDLNLGCPQGIARRGHYGSFLLEEPELVLGIVEK 144
Query: 266 LRQAVQVPVSCKIRIYQ----------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
+ + ++ PVS KIR+ DV T E+ + L+ G L+A+H RT + +G
Sbjct: 145 MVKGIKCPVSVKIRLMTAKDDDGSGRPDVAATKEFVKRLDALGVDLIALHPRTKEWKGQL 204
Query: 316 TGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG 374
T W+ VR + IP I NG I C DVE C T VM++E L P LF G
Sbjct: 205 TQACWWQAAAEVRACVPDIPFIVNGGISCFEDVEKCFKVTKCDAVMSSECILEVPTLFRG 264
Query: 375 QTR--PAW---ELASEYLDLVAQYPVRL--QYARGHVFNMCHHLLTLPENSDVRLLVGKT 427
+ PA EL EY+ YP + + H F M + L + +VR +G +
Sbjct: 265 PEKDGPALSQCELVEEYIKFARMYPHTAPPRCVKSHAFRMLY--APLQKFIEVREKLGGS 322
Query: 428 NHIKDLRKAVDMLRE 442
++++ AV L E
Sbjct: 323 RSVEEISVAVKTLDE 337
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 49/80 (61%)
Query: 60 PKDCHSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD 119
P+ R + W +GSPR++ APMVD SEL +R+++R+YG+ CYTPM+ A F
Sbjct: 9 PRGSDVRVHRYEWWKSIGSPRYVTAPMVDQSELAFRMMTRKYGAQFCYTPMMHAKSFATS 68
Query: 120 KKLRQEILMSTPEDRPLIIQ 139
KK R++ + P D PL Q
Sbjct: 69 KKYREKNFETAPGDSPLAAQ 88
>gi|407418441|gb|EKF38196.1| dihydrouridine synthase (Dus), putative [Trypanosoma cruzi
marinkellei]
Length = 519
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 160/309 (51%), Gaps = 50/309 (16%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE------ 202
P +++ PMVD SELP+R+L RR+G+ L Y+PM+ A F + R +TP
Sbjct: 96 PMYVVGPMVDQSELPFRMLCRRHGATLAYSPMLHARSFAQSAQYRARYFSTTPHRTEAAM 155
Query: 203 -----------------------DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCP 239
D PL +QFCGND+ L AA+ E C+ +D+N+GCP
Sbjct: 156 TTTDPREGEAVENAKRIRDGEEIDHPLFVQFCGNDADTLLAAARYVENDCEAVDVNLGCP 215
Query: 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC 299
Q +A+RGHYG++L +DW L+ N++ L ++VPV+ K+R++ D T++YA ML G
Sbjct: 216 QGIARRGHYGSFLMEDWDLVHNILHCLAVELRVPVTAKMRVFDDDALTLKYAEMLRDTGI 275
Query: 300 QLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVA 357
+L VHGRT R GLA E I VR+ L +IPVI NGN+ DV + T
Sbjct: 276 AVLCVHGRT---RHNKRGLADMEKIRRVREHLRGSIPVIGNGNVLTFEDVRRNMTVTMTD 332
Query: 358 GVMTAEGNLYNPALFTGQTRP----------------AWELASEYLDLVAQYPVRLQYAR 401
G M AE L++P LF P A A EYL V +YPV L + +
Sbjct: 333 GYMCAEPLLWDPRLFAAPLHPVRNGRCFAECREARLDAIRTAQEYLQFVQRYPVDLAFVK 392
Query: 402 GHVFNMCHH 410
H+F M H
Sbjct: 393 AHLFKMLFH 401
>gi|71411788|ref|XP_808128.1| dihydrouridine synthase (Dus) [Trypanosoma cruzi strain CL Brener]
gi|70872267|gb|EAN86277.1| dihydrouridine synthase (Dus), putative [Trypanosoma cruzi]
Length = 548
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 114/309 (36%), Positives = 160/309 (51%), Gaps = 50/309 (16%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE------ 202
P +++ PMVD SELP+R+L RRYG+ L Y+PM+ A F + R +TP
Sbjct: 96 PMYVVGPMVDQSELPFRMLCRRYGATLAYSPMLHARSFAQSAQYRARYFSTTPHRAELAM 155
Query: 203 -----------------------DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCP 239
D PL +QFCGND+ L AA+ E C+ +D+N+GCP
Sbjct: 156 TATASGEGEAAEDAGRTSDGEETDHPLFVQFCGNDADTLLAAARHVEDDCEAVDVNLGCP 215
Query: 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC 299
Q +A+RGHYG++L +DW + N++ L ++VPV+ K+R++ D T++YA ML G
Sbjct: 216 QGIARRGHYGSFLMEDWDRVHNILHCLAVELRVPVTAKMRVFDDDALTLKYAEMLRDTGI 275
Query: 300 QLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVA 357
+L VHGRT R G+A E I VR+ L +IPVI NGN+ DV ++ T
Sbjct: 276 AVLCVHGRT---RHNKRGIADMEKIRRVREHLRGSIPVIGNGNVLTFEDVRRNMSATMTD 332
Query: 358 GVMTAEGNLYNPALFTGQTRP----------------AWELASEYLDLVAQYPVRLQYAR 401
G M AE L++P LF P A A EYL V +YPV L + +
Sbjct: 333 GYMCAEPLLWDPRLFAAPLHPVRNGRCFAERREARLDAIRTAQEYLQFVQRYPVDLAFVK 392
Query: 402 GHVFNMCHH 410
H+F M H
Sbjct: 393 AHLFKMLFH 401
>gi|340053464|emb|CCC47757.1| putative dihydrouridine synthase [Trypanosoma vivax Y486]
Length = 508
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 116/318 (36%), Positives = 170/318 (53%), Gaps = 55/318 (17%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST-----PE 202
SP +++ PMVD SELP+R+L RRYG+ L Y+PM+ A F R+ +T P
Sbjct: 62 SPMYVVGPMVDQSELPFRILCRRYGATLAYSPMLHAKSFAQSASYRKRYFSTTLPLWNPS 121
Query: 203 ------------------DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAK 244
D PL +QFCGND + + AA+ E +C+ +D N+GCPQ +A+
Sbjct: 122 LNETSDSSGQGKTNRQDCDHPLFVQFCGNDPETVLTAARYVEDYCEAVDFNLGCPQGIAR 181
Query: 245 RGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
RGHYG++L +DW L+ N++ L ++VPV+ K+R++ D T++YA ML G +L V
Sbjct: 182 RGHYGSFLMEDWELIHNILHMLVVELRVPVTAKMRVFDDELLTLKYAEMLRDTGIYVLCV 241
Query: 305 HGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTA 362
HGRT + +G T A + I V + L TIP+I NGN+ DV LA+T G+M A
Sbjct: 242 HGRTRENKGQQTKPADLDIIRRVHEHLGGTIPIITNGNVLTFEDVPRNLAKTNCEGIMCA 301
Query: 363 EGNLYNPALF----------------------TG----QTRP----AWELASEYLDLVAQ 392
E L++P LF TG + RP A EYL+LV +
Sbjct: 302 EPLLWDPCLFAPAAGGALGGERDGSKRRLTVRTGRLFAERRPSRLAAISATREYLELVRR 361
Query: 393 YPVRLQYARGHVFNMCHH 410
+PV + + + H+F M +H
Sbjct: 362 FPVDIGFVKAHMFKMLYH 379
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 78 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
SP +++ PMVD SELP+R+L RRYG+ L Y+PM+ A F R+ +T
Sbjct: 62 SPMYVVGPMVDQSELPFRILCRRYGATLAYSPMLHAKSFAQSASYRKRYFSTT 114
>gi|225561353|gb|EEH09633.1| tRNA-dihydrouridine synthase [Ajellomyces capsulatus G186AR]
Length = 583
Score = 207 bits (527), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 108/279 (38%), Positives = 155/279 (55%), Gaps = 41/279 (14%)
Query: 137 IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSH-------LCYTPMVSAHQFIAD 189
+ R + LGSP ILAPMVD SE WR+L+R + + L Y+PM + F
Sbjct: 10 LFGREFYKSLGSPSMILAPMVDRSEFAWRMLTRSFMNPDSDSPPLLAYSPMFHSRLFKES 69
Query: 190 KKLR-------------------QEILMSTPE-------------DRPLIIQFCGNDSKN 217
R +I P+ DRPLI+QFC N+
Sbjct: 70 PNYRLQHFEATRPRSKTPTTPAANDIDGGAPQSNTIPYLDGNPSFDRPLIVQFCANNPDE 129
Query: 218 LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCK 277
L +AA+ EP CD +D+N+GCPQ +A++GHYGA+LQ+ L+ L+++L + +PV+ K
Sbjct: 130 LLQAARAVEPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYELINTLHTQLSIPVTAK 189
Query: 278 IRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPV 335
RI + KT+EYAR++ AG ++ VHGR +Q+G NTGLA W +I +R+ L +
Sbjct: 190 FRIQETKEKTLEYARIILSAGASIITVHGRRREQKGHNTGLADWSYIRYLRENLPADTVI 249
Query: 336 IANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG 374
ANGNI D+E CL TG GVM+AEG+L +P +F+G
Sbjct: 250 FANGNILNHGDIEKCLEATGADGVMSAEGSLCDPTIFSG 288
>gi|325090797|gb|EGC44107.1| tRNA-dihydrouridine synthase [Ajellomyces capsulatus H88]
Length = 583
Score = 207 bits (527), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 109/284 (38%), Positives = 159/284 (55%), Gaps = 41/284 (14%)
Query: 137 IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSH-------LCYTPMVSAHQFIAD 189
+ R + LGSP ILAPMVD SE WR+L+R + + L Y+PM + F
Sbjct: 10 LFGREFYKSLGSPSMILAPMVDRSEFAWRMLTRSFMNPDSDSPPLLAYSPMFHSRLFKES 69
Query: 190 KKLRQEILMST-------------------PE-------------DRPLIIQFCGNDSKN 217
R + +T P+ DRPLI+QFC N+ +
Sbjct: 70 PNYRLQHFEATRPRSKTPTTPAANGIDGGAPQSNTVPYLDGNPSFDRPLIVQFCANNPDD 129
Query: 218 LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCK 277
L +AA+ EP CD +D+N+GCPQ +A++GHYGA+LQ+ L+ L+++L + +PV+ K
Sbjct: 130 LLQAARAVEPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYELINTLHTHLSIPVTAK 189
Query: 278 IRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPV 335
RI + KT+EYAR++ AG ++ VHGR +Q+G NTGLA W +I +R+ L +
Sbjct: 190 FRIQETKEKTLEYARIILSAGASIITVHGRRREQKGHNTGLADWSYIRYLRENLPADTVI 249
Query: 336 IANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPA 379
ANGNI D+E CL TG GVM+AEG+L +P +F+G P+
Sbjct: 250 FANGNILNHGDIEKCLEATGADGVMSAEGSLCDPTIFSGPPPPS 293
>gi|407852637|gb|EKG06033.1| dihydrouridine synthase (Dus), putative [Trypanosoma cruzi]
Length = 548
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/309 (37%), Positives = 161/309 (52%), Gaps = 50/309 (16%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE------ 202
P +++ PMVD SELP+R+L RRYG+ L Y+PM+ A F + R +TP
Sbjct: 96 PMYVVGPMVDQSELPFRMLCRRYGATLAYSPMLHARSFAQSAQYRARYFSTTPHRAEPAM 155
Query: 203 -----------------------DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCP 239
D PL +QFCGND+ L AA+ E C+ +D+N+GCP
Sbjct: 156 TATASGEGEAAEDAGRTSDGEETDHPLFVQFCGNDADTLLAAARHVEDDCEAVDVNLGCP 215
Query: 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC 299
Q +A+RG+YG++L +DW + N++ L ++VPV+ K+R++ D T++YA ML G
Sbjct: 216 QGIARRGYYGSFLMEDWDRVHNILHCLAVELRVPVTAKMRVFDDDALTLKYAEMLRDTGI 275
Query: 300 QLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVA 357
+L VHGRT R GLA E I VR+ L +IPVI NGN+ DV ++ T
Sbjct: 276 AVLCVHGRT---RHNKRGLADMEKIRRVREHLRGSIPVIGNGNVLTFEDVRRNMSATMTD 332
Query: 358 GVMTAEGNLYNPALFTGQTRP----------------AWELASEYLDLVAQYPVRLQYAR 401
G M AE L++P LF P A A EYL LV +YPV L + +
Sbjct: 333 GYMCAEPLLWDPRLFAAPLHPVRNGRCFAECREARLDAIRTAQEYLQLVQRYPVDLAFVK 392
Query: 402 GHVFNMCHH 410
H+F M H
Sbjct: 393 AHLFKMLFH 401
>gi|390463920|ref|XP_003733131.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like, partial [Callithrix jacchus]
Length = 347
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 109/230 (47%), Positives = 142/230 (61%), Gaps = 14/230 (6%)
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
LL ++ + + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G
Sbjct: 2 LLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSG 61
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
ASWEHI AV PV ANGNIQ L DVE C+ TGV GVM+AEGNL+NPALF G++
Sbjct: 62 AASWEHIKAV-XXXXXPVFANGNIQSLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSP 120
Query: 378 PAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT-NHIKDLRKA 436
WELA EYLD+V ++P L Y R H+F + HH L + + L KT I + +
Sbjct: 121 AVWELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQQLREELAKVKTLEGIAAVSQE 180
Query: 437 VDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQQ 486
+ M + I EG K P N P WICQPYVRP P ++
Sbjct: 181 LKMRCQEEISRQEGAK--PTGNLPFH----------WICQPYVRPGPRER 218
>gi|194390922|dbj|BAG60579.1| unnamed protein product [Homo sapiens]
Length = 336
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/221 (48%), Positives = 140/221 (63%), Gaps = 27/221 (12%)
Query: 268 QAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G ASWEHI AV
Sbjct: 11 EKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAV 70
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYL 387
RKA+ IPV ANGNIQCL DVE CL TGV GVM+AEGNL+NPALF G++ WELA EYL
Sbjct: 71 RKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELAEEYL 130
Query: 388 DLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF--- 444
D+V R H+F + HH TL + ++R + K ++ + L+ R
Sbjct: 131 DIV----------REHLFKLWHH--TLQVHQELREELAKVKTLEGIAAVSQELKLRCQEE 178
Query: 445 IDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
I EG K P + P WICQPY+RP P +
Sbjct: 179 ISRQEGAK--PTGDLPFH----------WICQPYIRPGPRE 207
>gi|440634324|gb|ELR04243.1| hypothetical protein GMDG_06651 [Geomyces destructans 20631-21]
Length = 588
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 105/266 (39%), Positives = 147/266 (55%), Gaps = 33/266 (12%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADKKLR 193
R + +GSP+F+LAPMVD SE WR+L+R Y L Y+PM+ A F +K R
Sbjct: 32 RAFYESIGSPKFVLAPMVDQSEFAWRMLTRSYMTPESTKDLLAYSPMLHARLFTTTEKFR 91
Query: 194 ----QEILMSTPE---------------------DRPLIIQFCGNDSKNLTEAAKLAEPH 228
Q P DRPL +QFC N ++L AA+ P
Sbjct: 92 FNHFQPTRSGLPNPPLSAPPAESADIYLDGNPTIDRPLFVQFCANTPEDLLAAAQYVAPF 151
Query: 229 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTV 288
CD +D+N+GCPQ +A++G YGA+LQ+D L+ L+++L + VPV+ KIR+ + T+
Sbjct: 152 CDAVDLNLGCPQGIARKGGYGAFLQEDQELIYALINTLHTRLAVPVTAKIRVLKTRKATL 211
Query: 289 EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLAD 346
YA+ + AG +L VHGR + +G TGLA W I +R L + ANGNI D
Sbjct: 212 AYAKKVLSAGASILTVHGRLREAKGHKTGLADWAAIRHLRDNLPKETVIFANGNILSRGD 271
Query: 347 VEACLAQTGVAGVMTAEGNLYNPALF 372
+E CL TG VM+A+GNLY+PA+F
Sbjct: 272 IERCLEATGADAVMSADGNLYDPAIF 297
>gi|405954546|gb|EKC21957.1| tRNA-dihydrouridine synthase 1-like protein, partial [Crassostrea
gigas]
Length = 183
Score = 201 bits (510), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 118/156 (75%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L S ++++APMVDASEL WR+LSR+YG+ LCYTPM + F+ D R+E + + P+DRP
Sbjct: 13 LNSAKYVVAPMVDASELAWRMLSRKYGAQLCYTPMFHSSVFVRDPNYRKEAMQTCPDDRP 72
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
LI+QFC ND +AA+ E CD +D+N+GCPQ +AKRGHYGA+L+D+W LL +V+
Sbjct: 73 LIVQFCANDPDTFLKAAQYVENICDAVDLNLGCPQTIAKRGHYGAFLEDEWDLLKKMVAL 132
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQL 301
Q ++VP++CKIR+++ KTV YA+MLE+AGCQ+
Sbjct: 133 CHQKLKVPITCKIRVFESKEKTVMYAQMLEQAGCQV 168
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 49/64 (76%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
L S ++++APMVDASEL WR+LSR+YG+ LCYTPM + F+ D R+E + + P+DRP
Sbjct: 13 LNSAKYVVAPMVDASELAWRMLSRKYGAQLCYTPMFHSSVFVRDPNYRKEAMQTCPDDRP 72
Query: 136 LIIQ 139
LI+Q
Sbjct: 73 LIVQ 76
>gi|428186121|gb|EKX54972.1| hypothetical protein GUITHDRAFT_156831 [Guillardia theta CCMP2712]
Length = 261
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 146/227 (64%), Gaps = 11/227 (4%)
Query: 155 PMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGND 214
P + S + R+L+RR+G+ L Y+ M+ + + + ++ E L S EDRPLI+Q CGND
Sbjct: 22 PFLADSLVGSRILTRRWGASLAYSEMLFSERIVEEEDYLAEKLQSCMEDRPLIVQICGND 81
Query: 215 SKNLTEAAKLAEPHC-------DGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVSS 265
+ AA L E C D IDIN+GCPQ A GHYG+YL + DW L+ +V S
Sbjct: 82 PSIMARAACLIEDFCNNKSHGVDAIDINLGCPQKRAAEGHYGSYLLEKKDWKLVQEIVES 141
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+ ++V +P+SCKIR+ Q ++TVE+A++LE AGC LLAVHGR +R G A + I
Sbjct: 142 MSKSVNIPISCKIRLLQTESQTVEFAKLLEAAGCSLLAVHGR--QRRHGRKGPADLDQIA 199
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
AV++ALTIPVIANGN++ D+ L +T G+M+AEG L NPA+F
Sbjct: 200 AVKRALTIPVIANGNVRSPEDIWINLEKTRADGIMSAEGLLANPAIF 246
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 85 PMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
P + S + R+L+RR+G+ L Y+ M+ + + + ++ E L S EDRPLI+Q
Sbjct: 22 PFLADSLVGSRILTRRWGASLAYSEMLFSERIVEEEDYLAEKLQSCMEDRPLIVQ 76
>gi|310791648|gb|EFQ27175.1| dihydrouridine synthase [Glomerella graminicola M1.001]
Length = 555
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/276 (39%), Positives = 154/276 (55%), Gaps = 28/276 (10%)
Query: 134 RPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFI 187
+P + R + +GSP++ILAPMVD SE WR+LSR + + + YTPM A F
Sbjct: 21 KPKLHGRAFYESIGSPKYILAPMVDQSEFAWRMLSRSFIPPAEQKNLVAYTPMFHARLFK 80
Query: 188 ADKKLRQ-----------EILMSTPE---------DRPLIIQFCGNDSKNLTEAAKLAEP 227
+ RQ STP+ DRPL +QFC ND L AA P
Sbjct: 81 DTENYRQCHFQAVRPGDANDSTSTPQAWLDGNPSIDRPLFVQFCANDPDALLGAALRVAP 140
Query: 228 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKT 287
+CD +D+N+GCPQ +AK+G YGA+LQ+D L+ L+++L + + +PV+ KIRI T
Sbjct: 141 YCDAVDLNLGCPQGIAKKGKYGAFLQEDQELIFKLINTLHRNLPIPVTAKIRILPTREAT 200
Query: 288 VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLA 345
+ YA+ + AG +L VHGR +Q+G TGLA W I +R+ L + ANGNI
Sbjct: 201 LAYAKNVLSAGASILTVHGRLREQKGHLTGLADWSTIKWLREQLPPETVLFANGNILQHD 260
Query: 346 DVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWE 381
D++ L TG G+M+AEGNL +P +F+ P E
Sbjct: 261 DLQRALEATGADGIMSAEGNLSDPTIFSRPPEPGTE 296
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 26/93 (27%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADKKLRQ-- 124
+ +GSP++ILAPMVD SE WR+LSR + + + YTPM A F + RQ
Sbjct: 30 YESIGSPKYILAPMVDQSEFAWRMLSRSFIPPAEQKNLVAYTPMFHARLFKDTENYRQCH 89
Query: 125 ---------EILMSTPE---------DRPLIIQ 139
STP+ DRPL +Q
Sbjct: 90 FQAVRPGDANDSTSTPQAWLDGNPSIDRPLFVQ 122
>gi|346971599|gb|EGY15051.1| tRNA-dihydrouridine synthase [Verticillium dahliae VdLs.17]
Length = 743
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/270 (40%), Positives = 150/270 (55%), Gaps = 31/270 (11%)
Query: 134 RPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFI 187
+ ++ R + +GSP++++APMV SE WR+L+R + S L YTPM A F
Sbjct: 175 KAVLRGRAFYESIGSPKYVVAPMVAQSEFAWRMLTRSFLPPSEQSSILAYTPMFHARLFK 234
Query: 188 ADKKLRQ--------------EILMSTPE---------DRPLIIQFCGNDSKNLTEAAKL 224
+ R+ E TP DRPL +QFC ND + L AA+
Sbjct: 235 ETESYREQNFQPVRPGVSAASEATTPTPTPWLDGNPTIDRPLFVQFCANDPEALLGAAQR 294
Query: 225 AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDV 284
A P+CD +DIN GCPQ +A++GHYGA+LQ+D L+ LV++L + + +PV+ KIRI
Sbjct: 295 AAPYCDAVDINFGCPQGIARKGHYGAFLQEDQDLVFRLVNTLHRHLSIPVTAKIRILDTR 354
Query: 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQ 342
T+ YA + RAG +L VHGR +Q+G TGLA W I +R L + ANGNI
Sbjct: 355 EATLAYALNVLRAGASILTVHGRRREQKGHLTGLADWSTIRWLRDQLPPETVLFANGNIL 414
Query: 343 CLADVEACLAQTGVAGVMTAEGNLYNPALF 372
D+ CL TG VM+AEGNL +P LF
Sbjct: 415 EHGDLARCLEATGADAVMSAEGNLSDPGLF 444
>gi|148702859|gb|EDL34806.1| dihydrouridine synthase 1-like (S. cerevisiae), isoform CRA_a [Mus
musculus]
Length = 228
Score = 198 bits (504), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 89/158 (56%), Positives = 120/158 (75%), Gaps = 2/158 (1%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS--TPED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 30 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPED 89
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 90 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 149
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQL 301
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQ+
Sbjct: 150 LLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQV 187
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 73 WTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS-- 129
W++ LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 26 WSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDV 85
Query: 130 TPEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 86 CPEDRPLIVQ 95
>gi|380479522|emb|CCF42966.1| dihydrouridine synthase [Colletotrichum higginsianum]
Length = 547
Score = 197 bits (502), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 109/280 (38%), Positives = 153/280 (54%), Gaps = 32/280 (11%)
Query: 134 RPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFI 187
+P + R + +GSP++ILAPMVD SE WR+LSR + + + YTPM A F
Sbjct: 21 KPKLHGRAFYESIGSPKYILAPMVDQSEFAWRMLSRSFIPPSEQKNMVAYTPMFHARLFK 80
Query: 188 ADKKLRQ-----------------------EILMSTPE-DRPLIIQFCGNDSKNLTEAAK 223
+ RQ L P DRPL +QFC ND L AA
Sbjct: 81 DTENYRQCHFQAVRPSDSTDADTTTTPTPEAWLDGNPSIDRPLFVQFCANDPDALLGAAL 140
Query: 224 LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD 283
P+CD +D+N+GCPQ +AK+G YGA+LQ+D L+ L+++L + + +PV+ KIRI
Sbjct: 141 RVAPYCDAVDLNLGCPQGIAKKGKYGAFLQEDQELIFKLINTLHKNLPIPVTAKIRILDT 200
Query: 284 VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNI 341
T+ YA+ + AG +L VHGR +Q+G TGLA W I +R+ L + ANGNI
Sbjct: 201 REATLAYAKNVLSAGASILTVHGRLREQKGHLTGLADWSVIKWLREQLPPETVLFANGNI 260
Query: 342 QCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWE 381
D++ LA TG G+M+AEGNL +P +F+ P E
Sbjct: 261 LQHDDLQRALAATGADGIMSAEGNLSDPTIFSPPPEPGTE 300
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADKKLRQ 124
+ +GSP++ILAPMVD SE WR+LSR + + + YTPM A F + RQ
Sbjct: 30 YESIGSPKYILAPMVDQSEFAWRMLSRSFIPPSEQKNMVAYTPMFHARLFKDTENYRQ 87
>gi|258578427|ref|XP_002543395.1| tRNA-dihydrouridine synthase 1 [Uncinocarpus reesii 1704]
gi|237903661|gb|EEP78062.1| tRNA-dihydrouridine synthase 1 [Uncinocarpus reesii 1704]
Length = 514
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/259 (39%), Positives = 147/259 (56%), Gaps = 29/259 (11%)
Query: 137 IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE- 195
+ R + LGSP+ I+APMVD S+ L L Y+PM A F R +
Sbjct: 11 LTGREFYRSLGSPKTIIAPMVDRSDGSSNPL-------LAYSPMFHARLFKDRAAYRSQH 63
Query: 196 --------ILMSTPE-----------DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINI 236
+ T E DRPLI+QFC ND L AA+L +P+CD +D+N+
Sbjct: 64 FEAVRPSPVAGETAEPVPFLDGNPAIDRPLIVQFCANDPDELLAAARLVQPYCDAVDLNL 123
Query: 237 GCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLER 296
GCPQ +AK+GHYGA+LQ+D L+ L+ +L + +PV+ K RI + KT++YA+M+
Sbjct: 124 GCPQGIAKKGHYGAFLQEDPELIYKLIHTLHTGLSIPVTAKFRILETREKTLDYAKMILS 183
Query: 297 AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQT 354
AG ++VHGR +Q+G NTG+A W +I +R L + ANGNI D++ CL T
Sbjct: 184 AGASFISVHGRRREQKGHNTGVADWSYIRYLRDNLPPETVIFANGNILNHDDIQKCLEAT 243
Query: 355 GVAGVMTAEGNLYNPALFT 373
G VM+AEGNL +P +F+
Sbjct: 244 GADAVMSAEGNLSDPTIFS 262
>gi|164428803|ref|XP_956375.2| hypothetical protein NCU00065 [Neurospora crassa OR74A]
gi|157072287|gb|EAA27139.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 576
Score = 196 bits (499), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/281 (38%), Positives = 157/281 (55%), Gaps = 46/281 (16%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 199
R + +GSP++I+APMVD S+ P + ++ L
Sbjct: 41 RAFYESIGSPKYIVAPMVDQSD-----------------PRPDSSDYVP-------FLDG 76
Query: 200 TPE-DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL 258
PE DR L +QFC ND L AAKL P+CD +D+N+GCPQ +AKRG YG++LQ++ L
Sbjct: 77 NPEFDRSLFVQFCANDPAYLLSAAKLVAPYCDAVDLNLGCPQGIAKRGQYGSFLQENQEL 136
Query: 259 LTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL 318
+ L+++L + + +PV+ KIRI T++YA+ + RAG +L VHGR +Q+G TGL
Sbjct: 137 IFELINTLHKELDIPVTAKIRILDTKEATLKYAQNVLRAGASILTVHGRRREQKGHQTGL 196
Query: 319 ASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT--- 373
A WE+I +R+ L + ANGNI AD+E CLA TG GVM+AEGNL +P LF
Sbjct: 197 ADWEYIRYLRENLPKETVIFANGNILQHADLEKCLAATGADGVMSAEGNLSDPGLFARPP 256
Query: 374 --GQ-----------TRPAWELAS---EYLDLVAQYPVRLQ 398
G+ +R W + + YLD++ +Y + Q
Sbjct: 257 AVGEEGREYWRSKDGSRGGWRVDAVLRRYLDIIYKYVLEQQ 297
>gi|320587574|gb|EFX00049.1| dihydrouridine synthase family [Grosmannia clavigera kw1407]
Length = 556
Score = 195 bits (496), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 107/267 (40%), Positives = 154/267 (57%), Gaps = 31/267 (11%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADKKLR 193
R + +GSP++I+APMVD SE WR+L R + S L Y+PM+ A F+ ++ R
Sbjct: 20 RAFYESIGSPKYIVAPMVDQSEFAWRMLVRSFLAPEKRSSVLAYSPMLHARLFVDSQRYR 79
Query: 194 Q---EILMS-------------TPE-------DRPLIIQFCGNDSKNLTEAAKLAEPHCD 230
+ E + S TP DRPL +QFC ND L AA+L PHCD
Sbjct: 80 ESHFEAMRSGVDGAEGIAAAAATPHLDGNPAVDRPLFVQFCANDPTALLAAARLVAPHCD 139
Query: 231 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEY 290
+D+N+GCPQ +A++G YGA+LQ+D L+ L+ +L + + VPV+ KIRI T++Y
Sbjct: 140 AVDLNLGCPQGIARKGRYGAFLQEDRELIVRLIRALHEGLDVPVTAKIRILDTREATLQY 199
Query: 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVE 348
A+ + AG +L VHGR DQ+G TG+A W + +R +L + ANGN+ D++
Sbjct: 200 AQAVLAAGASILTVHGRRRDQKGHLTGIADWATLRFLRDSLPPETVLFANGNVLQPRDLQ 259
Query: 349 ACLAQTGVAGVMTAEGNLYNPALFTGQ 375
CL TG GVM+AEG L +P LF +
Sbjct: 260 RCLDATGFDGVMSAEGLLSDPGLFGSE 286
>gi|336469596|gb|EGO57758.1| hypothetical protein NEUTE1DRAFT_62941 [Neurospora tetrasperma FGSC
2508]
gi|350290757|gb|EGZ71971.1| FMN-linked oxidoreductase [Neurospora tetrasperma FGSC 2509]
Length = 594
Score = 194 bits (494), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 107/276 (38%), Positives = 155/276 (56%), Gaps = 46/276 (16%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 199
R + +GSP++I+APMVD S+ P + ++ L
Sbjct: 41 RAFYESIGSPKYIVAPMVDQSD-----------------PRPDSPDYVP-------FLDG 76
Query: 200 TPE-DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL 258
PE DR L +QFC ND L AAKL P+CD +D+N+GCPQ +AKRG YG++LQ++ L
Sbjct: 77 NPEFDRSLFVQFCANDPAYLLSAAKLVAPYCDAVDLNLGCPQGIAKRGQYGSFLQENQEL 136
Query: 259 LTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL 318
+ L+++L + + +PV+ KIRI T++YA+ + RAG +L VHGR +Q+G TGL
Sbjct: 137 IFELINTLHKELDIPVTAKIRILDTKEATLKYAQNVLRAGASILTVHGRRREQKGHQTGL 196
Query: 319 ASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT--- 373
A WE+I +R+ L + ANGNI AD+E CLA TG GVM+AEGNL +P LF
Sbjct: 197 ADWEYIRYLRENLPKETVIFANGNILQHADLEKCLAATGADGVMSAEGNLSDPGLFARPP 256
Query: 374 --GQ-----------TRPAWELAS---EYLDLVAQY 393
G+ +R W + + YLD++ +Y
Sbjct: 257 AVGEEGREYWRSKDGSRGGWRVDAVLRRYLDIIYKY 292
>gi|342885883|gb|EGU85835.1| hypothetical protein FOXB_03683 [Fusarium oxysporum Fo5176]
Length = 476
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 148/258 (57%), Gaps = 27/258 (10%)
Query: 128 MSTPEDRPL--------IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGS--HLCY 177
M+T E+ P + R + +GSP+FI+APMVD SE + + S
Sbjct: 1 MTTTEENPTSAGEHPTKLQGRAFYESIGSPKFIVAPMVDQSEFDEKYRKAHFQSVKSDGE 60
Query: 178 TPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIG 237
TP + + I DRPL +QFC ND + L AAK P+CD +D+N+G
Sbjct: 61 TPWLDGNPSI---------------DRPLFVQFCANDPEALLSAAKQVAPYCDAVDLNLG 105
Query: 238 CPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERA 297
CPQ +A++G YGA+LQ+D L+ L++ L + + VPV+ KIRI +T+ YA+ + +A
Sbjct: 106 CPQGIARKGKYGAFLQEDQDLIFRLINILHKELPVPVTAKIRILDTKEETLAYAQNVLKA 165
Query: 298 GCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTG 355
G +L VHGR +Q+G TGLA W+ I +R +L + ANGNI D+E CL TG
Sbjct: 166 GASILTVHGRRREQKGHLTGLAEWKMIRFLRDSLPRETVIFANGNILQEGDIEKCLEATG 225
Query: 356 VAGVMTAEGNLYNPALFT 373
GVM+AEGNL +PA+FT
Sbjct: 226 ADGVMSAEGNLSDPAIFT 243
>gi|313238054|emb|CBY13173.1| unnamed protein product [Oikopleura dioica]
Length = 575
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/248 (41%), Positives = 153/248 (61%), Gaps = 16/248 (6%)
Query: 154 APMVDASELPWRLLSRR-------YGSHLCYTPMVSAHQFIADKKLRQEILMSTPED-RP 205
APMVD S LP+R S+ G +L YTPM +AH + D K RQ +L RP
Sbjct: 16 APMVDLSWLPFRTRSKSDFKIIHSKGVNLSYTPMHNAHLIVNDLKYRQNVLADLRNSPRP 75
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ-DDWPLLTNLVS 264
+ +Q ND K EA ++ + CD +D+N+GCPQ +A+RG YGA++ W L++ L+
Sbjct: 76 VFVQMAANDVKLFLEAIRIVKDFCDAVDLNLGCPQHIARRGGYGAFMMLGSWELISELIQ 135
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
+ + ++ V KIR+++++ K+V+YA+ ER LL VHGRT++Q+ TGLA+WEHI
Sbjct: 136 AGSKIHRITV--KIRVFEEIEKSVKYAK--ERF---LLTVHGRTIEQKRELTGLANWEHI 188
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELAS 384
AV++ LTIPVI NGNI+ D+E +T V GVM+AEG L NP +FT + ++
Sbjct: 189 KAVKRKLTIPVILNGNIRYFEDIERAFQETRVDGVMSAEGILSNPGIFTPYSVTIHKVVD 248
Query: 385 EYLDLVAQ 392
E++ L +
Sbjct: 249 EFIVLFEE 256
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 72 AWTQLGSPRFILA--PMVDASELPWRLLSRR-------YGSHLCYTPMVSAHQFIADKKL 122
+W L + I A PMVD S LP+R S+ G +L YTPM +AH + D K
Sbjct: 2 SWLSLAAGEKIRASAPMVDLSWLPFRTRSKSDFKIIHSKGVNLSYTPMHNAHLIVNDLKY 61
Query: 123 RQEILMSTPED-RPLIIQ 139
RQ +L RP+ +Q
Sbjct: 62 RQNVLADLRNSPRPVFVQ 79
>gi|219117564|ref|XP_002179575.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408628|gb|EEC48561.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 233
Score = 193 bits (491), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/232 (43%), Positives = 141/232 (60%), Gaps = 10/232 (4%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM--STPEDRPLII 208
++LAPMVD S+LP+RLL R YG++LC+TPM+ A F + + R++ + P+DRPLI
Sbjct: 1 YVLAPMVDQSDLPFRLLCRSYGTNLCFTPMIHARLFTTNVEYRRKFTLQYGPPQDRPLIA 60
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
Q CG D + + A +P+CDGIDIN GCPQ +AKRG+YGA+L + +L LV +L Q
Sbjct: 61 QICGGDVQAVVACALAMQPYCDGIDINCGCPQNIAKRGNYGAFLLEQEDVLLPLVHTLLQ 120
Query: 269 AVQVPVSCKIRIY------QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
+ VP+S K+R+ + ++ L AG LL +HGRT +G TG A W+
Sbjct: 121 HLSVPLSVKVRLLPAETRQASLEASLRLYTKLVDAGVHLLTIHGRTRHHKGPLTGAADWD 180
Query: 323 HITAV--RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
I V R IP+ ANG + L D +ACLA T GVM++E L PALF
Sbjct: 181 AIRVVVDRLGQRIPIFANGGVASLRDAQACLATTHADGVMSSEALLEYPALF 232
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 44/61 (72%), Gaps = 2/61 (3%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM--STPEDRPLII 138
++LAPMVD S+LP+RLL R YG++LC+TPM+ A F + + R++ + P+DRPLI
Sbjct: 1 YVLAPMVDQSDLPFRLLCRSYGTNLCFTPMIHARLFTTNVEYRRKFTLQYGPPQDRPLIA 60
Query: 139 Q 139
Q
Sbjct: 61 Q 61
>gi|387193867|gb|AFJ68726.1| dihydrouridine synthase, partial [Nannochloropsis gaditana CCMP526]
Length = 371
Score = 191 bits (485), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 116/304 (38%), Positives = 162/304 (53%), Gaps = 33/304 (10%)
Query: 172 GSHLCYTPMVSAHQFIADKKLRQEI---LMSTPE---DRPLIIQFCGNDSKNLTEAAKLA 225
G L YT M A F K R+E L + PE DRPLI QF G+ + L AA L
Sbjct: 1 GIDLAYTQMFHATNFANVKVYREENWDGLGNAPENAFDRPLIAQFAGDSADELVRAASLI 60
Query: 226 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN 285
+ D +D+N+GCPQ +AKRGHYGAYL ++ L+ L+S + + + VPV+ KIR+ +
Sbjct: 61 QHEVDAVDLNLGCPQRIAKRGHYGAYLLEERNLVVRLLSHMVKHLAVPVTTKIRLLPNER 120
Query: 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLA 345
T+E + +E AG LL +HGRT +Q M+ G A W I ++ A IPV+ANG ++
Sbjct: 121 DTLELVKAIEDAGVALLTIHGRTREQNKMSVGKADWAAINKIKCACHIPVVANGGVETYE 180
Query: 346 DVEACLAQTGVAGVMTAEGNLYNPALF-------TGQTRPAWE----------------- 381
D AC + TG VM++EG L NP+LF G R +
Sbjct: 181 DALACQSVTGADAVMSSEGLLENPSLFLPGSSLLVGGERSRMQSCEREVEAFALAHRQLN 240
Query: 382 LASEYLDLVAQYPVRLQYA--RGHVFNMCHHLLTLPENSDVRLLVG-KTNHIKDLRKAVD 438
A EYL+L ++ R A +GH+F M +H+L +P N D+R +G K N IK + V
Sbjct: 241 FAQEYLELAKKFWPREGVATVKGHLFKMLYHILEVPANYDLREKLGAKGNGIKQYEQVVQ 300
Query: 439 MLRE 442
L E
Sbjct: 301 ELLE 304
>gi|390598920|gb|EIN08317.1| FMN-linked oxidoreductase [Punctularia strigosozonata HHB-11173
SS5]
Length = 290
Score = 191 bits (485), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 107/265 (40%), Positives = 153/265 (57%), Gaps = 14/265 (5%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK-----LRQEILMSTPEDRP 205
+I APMV+ S+LP+R+L RRYG+ L YT M+S + + D+ LR+ + DRP
Sbjct: 10 YIAAPMVNQSDLPFRILVRRYGATLVYTQMLSPQRLLEDRDYLDFHLRE---LGDENDRP 66
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLV 263
+++Q CGN+ L A+ CDGID+N GCPQ A+ GHYG YL Q DWPL+ NL+
Sbjct: 67 VVVQLCGNNPDTLIRGARKLVHRCDGIDLNFGCPQEHAQEGHYGGYLLGQRDWPLVQNLI 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
SS+ ++ VPVS KIR+ D + T A L +G + +H RTV R G A
Sbjct: 127 SSMSASLSVPVSAKIRLTPDPSLTPVLAERLATSGASWITLHARTVSARRRRHGAADLSW 186
Query: 324 ITAVRKALT--IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWE 381
+ AVR+A+ +PVI+NGN++ D+ A+TG G+M E L NP LF
Sbjct: 187 VKAVREAVDPRVPVISNGNVRTFEDMGRNKAETGADGLMVGETLLGNPCLFANVVPDPVR 246
Query: 382 LASEYLDLVAQYP--VRLQYARGHV 404
++ EYL + ++P V +Q A+ HV
Sbjct: 247 ISLEYLAICREHPDTVTIQIAQMHV 271
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 8/64 (12%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK-----LRQEILMSTPEDRP 135
+I APMV+ S+LP+R+L RRYG+ L YT M+S + + D+ LR+ + DRP
Sbjct: 10 YIAAPMVNQSDLPFRILVRRYGATLVYTQMLSPQRLLEDRDYLDFHLRE---LGDENDRP 66
Query: 136 LIIQ 139
+++Q
Sbjct: 67 VVVQ 70
>gi|84999472|ref|XP_954457.1| hypothetical protein [Theileria annulata]
gi|65305455|emb|CAI73780.1| hypothetical protein, conserved [Theileria annulata]
Length = 359
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 159/303 (52%), Gaps = 13/303 (4%)
Query: 141 TIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 200
+ + + SP+FI+APMVD SELP+RLL RRY + L YTPM+ A F ++ R ++
Sbjct: 18 SFWKSINSPKFIVAPMVDQSELPFRLLCRRYSADLAYTPMLHAKIFSENENYRNIHFHTS 77
Query: 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
+D+PLI QFCGND A+ + IDIN+GCPQ +AK+G YG++L + L+T
Sbjct: 78 SDDKPLIAQFCGNDPSAFILASSYIKNDVSAIDINLGCPQGIAKKGRYGSFLLEYPQLIT 137
Query: 261 NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320
+S V K ++ + + + GC+ L VHGR +
Sbjct: 138 KGFAS--------VDTKFMLF--TRGWLFSVQSCQANGCKALTVHGRHRSETKTRISECD 187
Query: 321 WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW 380
W+ I ++ + IPVIANG I+ DV+ CL TG VM++E L NP LF+G+
Sbjct: 188 WDSIKIIKSRVNIPVIANGGIETFEDVKRCLDYTGADAVMSSEAILENPYLFSGKMYNNI 247
Query: 381 ELASEYLDLVAQYP-VRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDM 439
++ EYL ++ P ++ +GH F + + + ++ D+R + N IK V
Sbjct: 248 DIFEEYLSILKGSPRQKISCIKGHAFKILYKYIN--QHHDIRTAISNANTIKKFENVVYD 305
Query: 440 LRE 442
LR
Sbjct: 306 LRN 308
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 62/124 (50%), Gaps = 13/124 (10%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
W + SP+FI+APMVD SELP+RLL RRY + L YTPM+ A F ++ R ++ +
Sbjct: 20 WKSINSPKFIVAPMVDQSELPFRLLCRRYSADLAYTPMLHAKIFSENENYRNIHFHTSSD 79
Query: 133 DRPLIIQRTIFPRLGSPRFILAPMV---DASELPWRL-------LSRRYGSHLCYTPMVS 182
D+PLI Q F FILA D S + L RYGS L P +
Sbjct: 80 DKPLIAQ---FCGNDPSAFILASSYIKNDVSAIDINLGCPQGIAKKGRYGSFLLEYPQLI 136
Query: 183 AHQF 186
F
Sbjct: 137 TKGF 140
>gi|296082372|emb|CBI21377.3| unnamed protein product [Vitis vinifera]
Length = 316
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 86/172 (50%), Positives = 119/172 (69%)
Query: 143 FPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 202
+ +LG P+ I+APMVD SELP+R+L R+YG+ YTPM+ + F ++K R + + E
Sbjct: 62 WKKLGQPKLIVAPMVDNSELPFRMLCRKYGAQAAYTPMLHSRIFSENEKYRSQEFTTCKE 121
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
DRPL +QFC ND L EAA+ EP+CD +DIN+GCPQ +A+RG+YGA+L D+ PL+ +L
Sbjct: 122 DRPLFVQFCANDPDTLLEAAQRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 181
Query: 263 VSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
V L + VPVSCKIR++ ++ T+ YARMLE AGC LLA DQ +
Sbjct: 182 VEKLALNLHVPVSCKIRVFPNLQDTINYARMLEDAGCSLLARCLEETDQANL 233
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 58/100 (58%), Gaps = 10/100 (10%)
Query: 44 QECHSPAARCKGTNVVPKDCHSSTARSDA----WTQLGSPRFILAPMVDASELPWRLLSR 99
QEC S +A P C + +R + W +LG P+ I+APMVD SELP+R+L R
Sbjct: 35 QECQSSSAD------WPSRCLTGESRIERAWAHWKKLGQPKLIVAPMVDNSELPFRMLCR 88
Query: 100 RYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+YG+ YTPM+ + F ++K R + + EDRPL +Q
Sbjct: 89 KYGAQAAYTPMLHSRIFSENEKYRSQEFTTCKEDRPLFVQ 128
>gi|156536943|ref|XP_001608232.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Nasonia
vitripennis]
Length = 346
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 157/295 (53%), Gaps = 12/295 (4%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+LP+R L R+Y +C+TPM+ A F+ K R + D PLI+QF
Sbjct: 17 VCAPMVRYSKLPFRTLVRKYDCDICFTPMILADSFVQSSKARDSEFSTNEGDSPLIVQFA 76
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
+ + EA ++ P+ +G+D+N GCPQ A + YGA L L+ LVS++R +
Sbjct: 77 AKEVDDFVEATEMVAPYSNGVDLNCGCPQRWALKDGYGADLLTKPQLVKELVSNVRNRIP 136
Query: 272 VP--VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK 329
P VS KIRI +D+ KT+E++R +E AG L VH RT D R L S + VR
Sbjct: 137 KPFTVSVKIRILKDIKKTIEFSRAIEHAGVSFLTVHARTPDMRNEPIDLDS---LKLVRS 193
Query: 330 ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDL 389
+ +P+IANGN++ D + ++ GVM A G L NPA+F+G E ++LD+
Sbjct: 194 CVHLPMIANGNVRSFEDAKTLYEESKCNGVMVAGGILTNPAIFSGYKNTPVECIQDWLDI 253
Query: 390 VAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
+ + H+ M +LT E +L+ N+ D+ D L+ERF
Sbjct: 254 TSTMSTQFMCMHHHLVFMLEKVLTKKE----KLVFNVLNNKSDV---YDFLKERF 301
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+LP+R L R+Y +C+TPM+ A F+ K R + D PLI+Q
Sbjct: 17 VCAPMVRYSKLPFRTLVRKYDCDICFTPMILADSFVQSSKARDSEFSTNEGDSPLIVQ 74
>gi|302676381|ref|XP_003027874.1| hypothetical protein SCHCODRAFT_60830 [Schizophyllum commune H4-8]
gi|300101561|gb|EFI92971.1| hypothetical protein SCHCODRAFT_60830 [Schizophyllum commune H4-8]
Length = 282
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/226 (42%), Positives = 142/226 (62%), Gaps = 8/226 (3%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ------EILMSTPEDRP 205
I APMV+ S+LP+R+L R+YG+ YT M++ + + D+ + E+ + P+ P
Sbjct: 9 IAAPMVNQSDLPFRMLVRKYGATATYTQMLNPDKILNDRDYLEFHQRDLELASNAPDGSP 68
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLV 263
I+Q CGND++ + +AAK + C GID+N+GCPQ A+ GHYGAYL Q DWPL+ ++V
Sbjct: 69 TIVQVCGNDTELVVQAAKRVQTLCQGIDLNLGCPQDAAREGHYGAYLLGQKDWPLVNDIV 128
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
SSL ++ +PVS K+R+ Q KT+ +A LE +G + +H RTV R G A E
Sbjct: 129 SSLSYSLTIPVSAKLRLCQPSIKTLAFATALEASGASWVTLHPRTVSARRRRQGAADLEV 188
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
+ A++ ALT+PV++NGN++ DV LA TG GVM E L NP
Sbjct: 189 VRALKSALTVPVVSNGNVRHWDDVPKNLALTGADGVMVGETLLGNP 234
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ------EILMSTPEDRP 135
I APMV+ S+LP+R+L R+YG+ YT M++ + + D+ + E+ + P+ P
Sbjct: 9 IAAPMVNQSDLPFRMLVRKYGATATYTQMLNPDKILNDRDYLEFHQRDLELASNAPDGSP 68
Query: 136 LIIQ 139
I+Q
Sbjct: 69 TIVQ 72
>gi|156400870|ref|XP_001639015.1| predicted protein [Nematostella vectensis]
gi|156226140|gb|EDO46952.1| predicted protein [Nematostella vectensis]
Length = 317
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 159/293 (54%), Gaps = 13/293 (4%)
Query: 154 APMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGN 213
APMV S+L +R L RRY LC+TPM+ + F+ +K R + DRP+++QF N
Sbjct: 33 APMVRYSKLSFRELVRRYDCDLCFTPMIISESFVKSQKARDSEFTTNSGDRPIVVQFAAN 92
Query: 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-V 272
+K+L +A ++ P DG+D+N GCPQ A + YGA+L + L+ ++V + V +
Sbjct: 93 CAKDLADATEIISPFVDGVDLNCGCPQRWAIQERYGAHLINQPELVKDMVRQTKSRVTGI 152
Query: 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT 332
PVS KIRI+QD KTV+ + E AG + +HGRT QR T S E I V++ L+
Sbjct: 153 PVSIKIRIHQDKRKTVDLCKRAEHAGASWITIHGRTSKQR---TEPPSMETIKLVKENLS 209
Query: 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQ 392
IPV+ANG+I+C D TG GVM A G L NPA++ G + E +++D
Sbjct: 210 IPVVANGDIRCTDDFLKVCEATGANGVMAARGILSNPAMYAGYSVTPVECIKDWID---- 265
Query: 393 YPVRLQYARGHVFNMC-HHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
+ + G F + HHLL + E + N +K +D LRE +
Sbjct: 266 ----ISLSLGTSFTIFHHHLLYMMEKITTKAEKRVFNSLKSTSGVLDYLRENY 314
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 84 APMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ--RT 141
APMV S+L +R L RRY LC+TPM+ + F+ +K R + DRP+++Q
Sbjct: 33 APMVRYSKLSFRELVRRYDCDLCFTPMIISESFVKSQKARDSEFTTNSGDRPIVVQFAAN 92
Query: 142 IFPRLGSPRFILAPMVDASEL----PWR-LLSRRYGSHLCYTP 179
L I++P VD +L P R + RYG+HL P
Sbjct: 93 CAKDLADATEIISPFVDGVDLNCGCPQRWAIQERYGAHLINQP 135
>gi|326436672|gb|EGD82242.1| dihydrouridine synthase [Salpingoeca sp. ATCC 50818]
Length = 434
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 107/274 (39%), Positives = 158/274 (57%), Gaps = 14/274 (5%)
Query: 146 LGSPRFILAPMVDASELPWR-LLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
LGSPR++ APMV SE +R L++ G L YTPM+ A Q + + Q L +D
Sbjct: 24 LGSPRYVCAPMVWQSETAFRRLVTAEGGCDLAYTPMMHADQLLENNLAAQSHLTDLRQDM 83
Query: 205 ------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL 258
PL+ Q C ++ + +AA+L EP+ D +D+N+GCPQ A+ G +GA+L +
Sbjct: 84 ERGRPYPLLGQLCATNADDFVQAAQLVEPYVDAVDLNLGCPQRTAQAGGFGAFLMEHPDT 143
Query: 259 LTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL 318
+ +V +QVPV CKIR++ DV+KTV +ARML+ +GC +LAVHGRT QR + G
Sbjct: 144 VAAIVQRASTTLQVPVCCKIRVFTDVDKTVAFARMLQESGCSMLAVHGRTRAQR-HHEGT 202
Query: 319 ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG---- 374
++ + A+ +AL IPV+ NG I +A L TG M+A G L P ++TG
Sbjct: 203 PHYDTVRAIVEALDIPVVVNGGIATRQQADAILRHTGACATMSATGLLACPLMYTGVAAS 262
Query: 375 QTRPAWELASEYLDLVAQYPVRL-QYARGHVFNM 407
+T P +E A +YL+ +YP +Y R HV +
Sbjct: 263 ETTP-FEHAHKYLEYACRYPPPCARYIRDHVLAL 295
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 76 LGSPRFILAPMVDASELPW-RLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPED 133
LGSPR++ APMV SE + RL++ G L YTPM+ A Q + + Q L +D
Sbjct: 24 LGSPRYVCAPMVWQSETAFRRLVTAEGGCDLAYTPMMHADQLLENNLAAQSHLTDLRQD 82
>gi|347300161|ref|NP_001003490.2| tRNA-dihydrouridine synthase 4-like [Danio rerio]
Length = 307
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 101/271 (37%), Positives = 154/271 (56%), Gaps = 6/271 (2%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
P + APMV S+L +R L R+Y +C+TPM+ A F+ K R + DRPLI+
Sbjct: 16 PVRVCAPMVRYSKLAFRTLVRKYDCDVCFTPMIIAADFMRSAKARDSEFTTNKNDRPLIV 75
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
QF D++ L +AA + P DG+D+N GCPQ A YGA L + L+ ++V +R
Sbjct: 76 QFAAKDAQTLADAACVVSPFSDGVDLNCGCPQRWAMSEGYGACLINKPELVKDMVRHVRN 135
Query: 269 AVQVP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+ P VS KIRI++DV +TV+ + +E AG + VHGRT +R ++ I
Sbjct: 136 QIDNPNYAVSIKIRIHKDVRQTVDLCQKVEAAGVSYITVHGRTAIERHQPV---HYDTIK 192
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
++ +L+IPVIANG+I+ + DVEA TGV GVM+A G L NPA+F+G + +
Sbjct: 193 TIKDSLSIPVIANGDIKSMQDVEAVCELTGVDGVMSARGLLSNPAMFSGFEETPLQCVWD 252
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPE 416
++D+ A++ H+ +M + + PE
Sbjct: 253 WVDIAAEHGTPFTCFHHHLIHMLERITSQPE 283
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P + APMV S+L +R L R+Y +C+TPM+ A F+ K R + DRPLI+
Sbjct: 16 PVRVCAPMVRYSKLAFRTLVRKYDCDVCFTPMIIAADFMRSAKARDSEFTTNKNDRPLIV 75
Query: 139 QRTI--FPRLGSPRFILAPMVDASEL----PWR-LLSRRYGSHLCYTP 179
Q L +++P D +L P R +S YG+ L P
Sbjct: 76 QFAAKDAQTLADAACVVSPFSDGVDLNCGCPQRWAMSEGYGACLINKP 123
>gi|187607636|ref|NP_001120313.1| uncharacterized protein LOC100145375 [Xenopus (Silurana)
tropicalis]
gi|156914833|gb|AAI52625.1| Zgc:92033 protein [Danio rerio]
gi|170285083|gb|AAI60936.1| LOC100145375 protein [Xenopus (Silurana) tropicalis]
Length = 306
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/271 (37%), Positives = 154/271 (56%), Gaps = 6/271 (2%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
P + APMV S+L +R L R+Y +C+TPM+ A F+ K R + DRPLI+
Sbjct: 15 PVRVCAPMVCYSKLAFRSLVRKYDCDVCFTPMIIAADFMRSAKARDSEFTTHKNDRPLIV 74
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
QF D++ L +AA + P DG+D+N GCPQ A YGA L + L+ ++V +R
Sbjct: 75 QFAAKDAQTLADAACVVSPFSDGVDLNCGCPQRWAMSEGYGACLINKPELVKDMVRHVRN 134
Query: 269 AVQVP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+ P VS KIRI++DV +TV+ + +E AG + VHGRT +R ++ I
Sbjct: 135 QIDNPNYAVSIKIRIHKDVRQTVDLCQKVEAAGVSYITVHGRTAIERHQPV---HYDTIK 191
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
++ +L+IPVIANG+I+ + DVEA TGV GVM+A G L NPA+F+G + +
Sbjct: 192 TIKDSLSIPVIANGDIKSMQDVEAVCELTGVDGVMSARGLLSNPAMFSGFEETPLQCVWD 251
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPE 416
++D+ A++ H+ +M + + PE
Sbjct: 252 WVDIAAEHGTPFTCFHHHLIHMLERITSQPE 282
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P + APMV S+L +R L R+Y +C+TPM+ A F+ K R + DRPLI+
Sbjct: 15 PVRVCAPMVCYSKLAFRSLVRKYDCDVCFTPMIIAADFMRSAKARDSEFTTHKNDRPLIV 74
Query: 139 QRTI--FPRLGSPRFILAPMVDASEL----PWR-LLSRRYGSHLCYTP 179
Q L +++P D +L P R +S YG+ L P
Sbjct: 75 QFAAKDAQTLADAACVVSPFSDGVDLNCGCPQRWAMSEGYGACLINKP 122
>gi|340371111|ref|XP_003384089.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Amphimedon
queenslandica]
Length = 312
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 94/237 (39%), Positives = 144/237 (60%), Gaps = 4/237 (1%)
Query: 154 APMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP-EDRPLIIQFCG 212
APMV S+LP+R L RRYG+ + +TPM+ + F+ +K R + P +DRPL+ QF
Sbjct: 26 APMVRYSKLPFRKLVRRYGTQVAFTPMIVSESFVRSQKSRDVEFTTDPLDDRPLVAQFAA 85
Query: 213 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV 272
N+ ++ + A++L P D +D+N GCPQ A YG+YL L+ ++V ++ +
Sbjct: 86 NNVEDFSRASQLVSPFVDAVDLNCGCPQRWAMEEGYGSYLITRPELVCDMVRGAKRVTGI 145
Query: 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT 332
PVS KIRI++D+ +TVE AR E G L VHGRTV QR L++ I +++++
Sbjct: 146 PVSIKIRIHEDLRETVELARRCEAIGLSWLTVHGRTVKQRAEPVNLSA---IKLIKESVH 202
Query: 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDL 389
IPVIANG+++ +D+ + +TGV GVM A G L NPA+F G E +++D+
Sbjct: 203 IPVIANGDMRNESDINRTVQETGVDGVMAARGMLQNPAMFGGYDETPIECLEDWVDI 259
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 35/228 (15%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP-ED 133
Q G+ + APMV S+LP+R L RRYG+ + +TPM+ + F+ +K R + P +D
Sbjct: 17 QPGAVVRMCAPMVRYSKLPFRKLVRRYGTQVAFTPMIVSESFVRSQKSRDVEFTTDPLDD 76
Query: 134 RPLIIQRTI-----FPRLGSPRFILAPMVDASEL----PWR-LLSRRYGSHLCYTPMVSA 183
RPL+ Q F R +++P VDA +L P R + YGS+L P
Sbjct: 77 RPLVAQFAANNVEDFSRASQ---LVSPFVDAVDLNCGCPQRWAMEEGYGSYLITRP---- 129
Query: 184 HQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVA 243
+ + D + + P + I ++L E +LA C+ IG +
Sbjct: 130 -ELVCDMVRGAKRVTGIPVSIKIRIH------EDLRETVELAR-RCEA----IGLSWLTV 177
Query: 244 KRGHYGAYLQDDWPLLTNLVSSLRQAVQVPV--SCKIRIYQDVNKTVE 289
H Q P+ + + ++++V +PV + +R D+N+TV+
Sbjct: 178 ---HGRTVKQRAEPVNLSAIKLIKESVHIPVIANGDMRNESDINRTVQ 222
>gi|451852896|gb|EMD66190.1| hypothetical protein COCSADRAFT_295811 [Cochliobolus sativus
ND90Pr]
Length = 503
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 83/173 (47%), Positives = 114/173 (65%), Gaps = 2/173 (1%)
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
DRPL +QFC ND + AAK P CD +D+N+GCPQ +AKRG YGA+LQ+DW L+ +
Sbjct: 51 DRPLTVQFCSNDPDDFLRAAKHVAPFCDAVDLNLGCPQGIAKRGKYGAFLQEDWDLIARM 110
Query: 263 VSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
+ L + + +PV+ K+RI + KT+ YA+ + AG +L VHGR +Q+G NTGLA W+
Sbjct: 111 IRKLHEELDIPVTAKMRILETPEKTLAYAKTILDAGASILTVHGRRREQKGHNTGLADWQ 170
Query: 323 HITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
I +R+ L + ANGNI D+ ACL TG GVM+AEGNLY+P +F
Sbjct: 171 MIRYLRENLPKETVLFANGNILQHEDIAACLEATGADGVMSAEGNLYDPTIFA 223
>gi|428165461|gb|EKX34455.1| hypothetical protein GUITHDRAFT_61641, partial [Guillardia theta
CCMP2712]
Length = 245
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 148/238 (62%), Gaps = 9/238 (3%)
Query: 143 FPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 202
F +G P + LAPMV SE +R+L+RR G+H+C T M+ A + + R + PE
Sbjct: 6 FESVGRPVYWLAPMVGQSECAFRMLARRNGAHICSTEMIDAAGYARSESYRAQFPFH-PE 64
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
DRPLI+Q G++ +L AA LA PHC +++N+GCPQ AK+G YGA+L + LL
Sbjct: 65 DRPLIVQLGGSNPADLAAAAALAAPHCAAVELNVGCPQRCAKKGGYGAFLMEKRELLAEC 124
Query: 263 VSSLRQAVQV---PVSC--KIRIYQDVNKTVEYARMLERAGCQLLAVHGRT-VDQRGMNT 316
V S+ A++ +C KIR + DV +TVE ARM+ R GCQ L VHGRT V G T
Sbjct: 125 VRSMADAIRKSNPKAACLVKIRCFDDVAETVELARMVRRCGCQCLTVHGRTRVQGGGKRT 184
Query: 317 GL--ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
G A+WE I AV++AL IPVI+NGNI+ D+E CLA TG GVM+ G L P +F
Sbjct: 185 GRWPANWEWIRAVKQALDIPVISNGNIRTHRDIEECLAATGADGVMSGCGMLRRPWIF 242
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 99/241 (41%), Gaps = 43/241 (17%)
Query: 71 DAWT---QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL 127
+AW +G P + LAPMV SE +R+L+RR G+H+C T M+ A + + R +
Sbjct: 1 EAWEWFESVGRPVYWLAPMVGQSECAFRMLARRNGAHICSTEMIDAAGYARSESYRAQFP 60
Query: 128 MSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASE------------LPWRLLSR-RYGSH 174
PEDRPLI+Q LG A P R + YG+
Sbjct: 61 FH-PEDRPLIVQ------LGGSNPADLAAAAALAAPHCAAVELNVGCPQRCAKKGGYGAF 113
Query: 175 LCYTPMVSAHQFIAD--KKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGI 232
L + + +A+ + + I S P+ L+ C +D E A++
Sbjct: 114 L-----MEKRELLAECVRSMADAIRKSNPKAACLVKIRCFDDVAETVELARMVR------ 162
Query: 233 DINIGCPQMVA---KRGHYGAYLQDDWPLLTNLVSSLRQAVQVPV--SCKIRIYQDVNKT 287
GC + R G WP + +++QA+ +PV + IR ++D+ +
Sbjct: 163 --RCGCQCLTVHGRTRVQGGGKRTGRWPANWEWIRAVKQALDIPVISNGNIRTHRDIEEC 220
Query: 288 V 288
+
Sbjct: 221 L 221
>gi|393245788|gb|EJD53298.1| FMN-linked oxidoreductase [Auricularia delicata TFB-10046 SS5]
Length = 269
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/235 (41%), Positives = 139/235 (59%), Gaps = 15/235 (6%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM------STPED 203
RF+ APMV S+LP+R+L+RR+G+ L YT M A++ + D R+ + +TP
Sbjct: 12 RFVAAPMVKQSDLPFRILARRHGATLAYTQMFMANRLVNDVPYRERHMADLMRGWTTPLG 71
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLT 260
RP+++Q GND + + AA++ EP+CD +D+N+GCPQ A GHYG YL + DWP +
Sbjct: 72 RPVVVQLGGNDPETMCAAARIVEPYCDAVDVNLGCPQQHACDGHYGGYLIQARRDWPTVE 131
Query: 261 NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320
+V+ L A+ VP+ KIR+ + T E A L RAG ++A+H R V R G A
Sbjct: 132 AIVAQLHSALNVPLHVKIRLCSTASMTAELAVRLARAGASVIALHARHVSARRRRHGPAE 191
Query: 321 WEHITAVRKALT------IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
E +TA+R+AL VI+NGN++ LAD L TG AGVM E L NP
Sbjct: 192 LEWVTAIREALAREGCEGTHVISNGNVRTLADCHVNLKSTGAAGVMVGESLLGNP 246
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 6/66 (9%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM------STPED 133
RF+ APMV S+LP+R+L+RR+G+ L YT M A++ + D R+ + +TP
Sbjct: 12 RFVAAPMVKQSDLPFRILARRHGATLAYTQMFMANRLVNDVPYRERHMADLMRGWTTPLG 71
Query: 134 RPLIIQ 139
RP+++Q
Sbjct: 72 RPVVVQ 77
>gi|169599118|ref|XP_001792982.1| hypothetical protein SNOG_02375 [Phaeosphaeria nodorum SN15]
gi|160704540|gb|EAT90587.2| hypothetical protein SNOG_02375 [Phaeosphaeria nodorum SN15]
Length = 491
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 117/173 (67%), Gaps = 2/173 (1%)
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
DRPL +QFC ND + AAK P CD +D+N+GCPQ +AKRG YGA+LQ+D L+ +
Sbjct: 46 DRPLTVQFCSNDPDDFLRAAKHVAPFCDAVDLNLGCPQGIAKRGKYGAFLQEDQGLIARM 105
Query: 263 VSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
++ L + ++VPV+ K+R+ + KT+EYA+ + AG ++ VHGR +Q+G NTGLA W+
Sbjct: 106 INKLHEELEVPVTAKMRVLETKEKTLEYAKTILDAGASIITVHGRRREQKGHNTGLADWQ 165
Query: 323 HITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
I +R++L + ANGNI D+ ACL TG GVM+AEGNLY+P +F
Sbjct: 166 MIRYLRESLPKDTVIFANGNILQHEDIAACLEATGADGVMSAEGNLYDPTIFA 218
>gi|237836529|ref|XP_002367562.1| dihydrouridine synthase domain-containing protein [Toxoplasma
gondii ME49]
gi|211965226|gb|EEB00422.1| dihydrouridine synthase domain-containing protein [Toxoplasma
gondii ME49]
Length = 540
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 145/298 (48%), Gaps = 70/298 (23%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ---EILMSTPE 202
+G PRF++APMVDASEL +RLL RRYG L YTPM+ + F+ D K R + L S+P
Sbjct: 34 IGRPRFVMAPMVDASELAFRLLGRRYGVDLAYTPMLHSRLFLDDSKYRALHWQTLRSSPS 93
Query: 203 ----------------------------------------------DRPLIIQFCGNDSK 216
D P+ +QFCG+
Sbjct: 94 WTQASCSEEEDVQEEEEGEEEEGEEGEREVSEGGRSQWTGDESQEFDEPVFVQFCGDSPA 153
Query: 217 NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSC 276
L AA+L E + +D+N GCPQ +A+RGHYGA+L ++ LL ++VS+L + ++ PV+C
Sbjct: 154 TLLAAAQLVEDEVEAVDVNFGCPQGIARRGHYGAFLLNEPELLVDIVSTLHKHLKTPVTC 213
Query: 277 KIRIYQDVN---------------------KTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
K+R N T+ E AGC L +HGRT +++
Sbjct: 214 KMRKVSPRNPRDALPRSEAALVLDEERRLQDTLRLCDAFEAAGCACLCIHGRTKEEKAAF 273
Query: 316 TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
G W I V++ L+IPVIANG ++ D CL TG VM+AEG L NP LF
Sbjct: 274 VGPCDWLAIRHVKQRLSIPVIANGAVETYEDALRCLEFTGADAVMSAEGLLDNPMLFA 331
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 42/62 (67%), Gaps = 3/62 (4%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ---EILMS 129
W +G PRF++APMVDASEL +RLL RRYG L YTPM+ + F+ D K R + L S
Sbjct: 31 WDSIGRPRFVMAPMVDASELAFRLLGRRYGVDLAYTPMLHSRLFLDDSKYRALHWQTLRS 90
Query: 130 TP 131
+P
Sbjct: 91 SP 92
>gi|240274458|gb|EER37974.1| dihydrouridine synthase [Ajellomyces capsulatus H143]
Length = 545
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/179 (46%), Positives = 122/179 (68%), Gaps = 2/179 (1%)
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
DRPLI+QFC N+ +L +AA+ EP CD +D+N+GCPQ +A++GHYGA+LQ+ L+ L
Sbjct: 77 DRPLIVQFCANNPDDLLQAARAVEPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYEL 136
Query: 263 VSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
+++L + +PV+ K RI + KT+EYAR++ AG ++ VHGR +Q+G NTGLA W
Sbjct: 137 INTLHTQLSIPVTAKFRIQETKEKTLEYARIILSAGASIITVHGRRREQKGHNTGLADWS 196
Query: 323 HITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPA 379
+I +R+ L + ANGNI D+E CL TG GVM+AEG+L +P +F+G P+
Sbjct: 197 YIRYLRENLPADTVIFANGNILNHGDIEKCLEATGADGVMSAEGSLCDPTIFSGPPPPS 255
>gi|221505283|gb|EEE30937.1| dihydrouridine synthase domain-containing protein, putative
[Toxoplasma gondii VEG]
Length = 544
Score = 183 bits (464), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 105/302 (34%), Positives = 146/302 (48%), Gaps = 74/302 (24%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ---EILMSTPE 202
+G PRF++APMVDASEL +RLL RRYG L YTPM+ + F+ D K R + L S+P
Sbjct: 34 IGRPRFVMAPMVDASELAFRLLGRRYGVDLAYTPMLHSRLFLDDSKYRALHWQTLRSSPS 93
Query: 203 --------------------------------------------------DRPLIIQFCG 212
D P+ +QFCG
Sbjct: 94 WTQASCSEEEDVQEEGEEEGEEEEEGEEGEEGEVSEGGRSQWTGDESQEFDEPVFVQFCG 153
Query: 213 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV 272
+ L AA+L E + +D+N+GCPQ +A+RGHYGA+L ++ LL ++VS+L + ++
Sbjct: 154 DSPATLLAAAQLVEDEVEAVDVNVGCPQGIARRGHYGAFLLNEPELLVDIVSTLHKHLKT 213
Query: 273 PVSCKIRIYQDVN---------------------KTVEYARMLERAGCQLLAVHGRTVDQ 311
PV+CK+R N T+ E AGC L +HGRT ++
Sbjct: 214 PVTCKMRKVSPRNPRDALPRSEAALVLDEERRLQDTLRLCDAFEAAGCACLCIHGRTKEE 273
Query: 312 RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371
+ G W I V++ L+IPVIANG ++ D CL TG VM+AEG L NP L
Sbjct: 274 KAAFVGPCDWLAIRHVKQRLSIPVIANGAVETYEDALRCLEFTGADAVMSAEGLLDNPML 333
Query: 372 FT 373
F
Sbjct: 334 FA 335
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 42/62 (67%), Gaps = 3/62 (4%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ---EILMS 129
W +G PRF++APMVDASEL +RLL RRYG L YTPM+ + F+ D K R + L S
Sbjct: 31 WDSIGRPRFVMAPMVDASELAFRLLGRRYGVDLAYTPMLHSRLFLDDSKYRALHWQTLRS 90
Query: 130 TP 131
+P
Sbjct: 91 SP 92
>gi|190346080|gb|EDK38084.2| hypothetical protein PGUG_02182 [Meyerozyma guilliermondii ATCC
6260]
Length = 347
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/323 (32%), Positives = 168/323 (52%), Gaps = 15/323 (4%)
Query: 132 EDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK 191
E PL I + +LG P FI PMV S+LP+R L R Y + + YTPM+ A +F+ +
Sbjct: 14 EHNPLRIIKNAKSKLGRPAFIAGPMVRYSKLPFRELVRHYNTDIVYTPMILAREFVRNDV 73
Query: 192 LRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAY 251
R + P DR +I+Q N+ ++L + ++ P+ DGI +N GCP R GA
Sbjct: 74 ARASDFTTNPADRSVIVQVGCNNVEDLLKFVEMIHPYVDGIGLNCGCPIKEQVREGIGAA 133
Query: 252 LQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309
L + L++++V +++Q ++ + KIRI+ D+ +T+++ +M+E +G + VHGRT
Sbjct: 134 LMSEPELVSSMVKAVKQKYGDKICIETKIRIHPDIKETLKFVKMVEESGVDFITVHGRTK 193
Query: 310 DQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
+ R ++ + + I AV++A+++PV+ANG+ L D TGV GVM G L NP
Sbjct: 194 NTR--SSVPVNLDAIKAVKEAVSVPVVANGDCFSLQDAYDIAEYTGVDGVMAVRGILANP 251
Query: 370 ALFTGQTRPAWELASEYLDLVAQY--PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT 427
ALF G W + DL Y P R+ + HHL + E + ++ +
Sbjct: 252 ALFAGYKSAPWSAVERFWDLATSYGLPFRI---------IQHHLSQMLEKKIPKKVLKEM 302
Query: 428 NHIKDLRKAVDMLRERFIDYHEG 450
N L +D FI +G
Sbjct: 303 NETTSLVDMIDWFDANFILRRKG 325
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 70 SDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+A ++LG P FI PMV S+LP+R L R Y + + YTPM+ A +F+ + R +
Sbjct: 22 KNAKSKLGRPAFIAGPMVRYSKLPFRELVRHYNTDIVYTPMILAREFVRNDVARASDFTT 81
Query: 130 TPEDRPLIIQ 139
P DR +I+Q
Sbjct: 82 NPADRSVIVQ 91
>gi|50417946|gb|AAH78413.1| Zgc:92033 [Danio rerio]
Length = 285
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/264 (37%), Positives = 150/264 (56%), Gaps = 6/264 (2%)
Query: 156 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDS 215
MV S+L +R L R+Y +C+TPM+ A F+ K R + DRPLI+QF D+
Sbjct: 1 MVRYSKLAFRSLVRKYDCDVCFTPMIIAADFMRSAKARDSEFTTNKNDRPLIVQFAAKDA 60
Query: 216 KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVP-- 273
+ L +AA + P DG+D+N GCPQ A YGA L + L+ ++V +R + P
Sbjct: 61 QTLADAACVVSPFSDGVDLNCGCPQRWAMSEGYGACLINKPELVKDMVRHVRNQIDNPNY 120
Query: 274 -VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT 332
VS KIRI++DV +TV+ + +E AG + VHGRT +R ++ I ++ +L+
Sbjct: 121 AVSIKIRIHKDVRQTVDLCQKVEAAGVSYITVHGRTAIERHQPV---HYDTIKTIKDSLS 177
Query: 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQ 392
IPVIANG+I+ + DVEA TGV GVM+A G L NPA+F+G + +++D+ A+
Sbjct: 178 IPVIANGDIKSMQDVEAVCELTGVDGVMSARGLLSNPAMFSGFEETPLQCVWDWVDIAAE 237
Query: 393 YPVRLQYARGHVFNMCHHLLTLPE 416
+ H+ +M + + PE
Sbjct: 238 HGTPFTCFHHHLIHMLERITSQPE 261
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 86 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTI--F 143
MV S+L +R L R+Y +C+TPM+ A F+ K R + DRPLI+Q
Sbjct: 1 MVRYSKLAFRSLVRKYDCDVCFTPMIIAADFMRSAKARDSEFTTNKNDRPLIVQFAAKDA 60
Query: 144 PRLGSPRFILAPMVDASEL----PWR-LLSRRYGSHLCYTP 179
L +++P D +L P R +S YG+ L P
Sbjct: 61 QTLADAACVVSPFSDGVDLNCGCPQRWAMSEGYGACLINKP 101
>gi|391325013|ref|XP_003737035.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Metaseiulus occidentalis]
Length = 303
Score = 182 bits (462), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/304 (35%), Positives = 157/304 (51%), Gaps = 14/304 (4%)
Query: 146 LGSPRF--ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPED 203
L SP I APMV S+ +R L R Y + YTPMV A F K R ++ D
Sbjct: 9 LESPEMTRICAPMVRYSKQSFRELVRLYDVDIAYTPMVLAESFTKSAKARNVEFSTSSTD 68
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QF +D + AA++ P DG+D+N GCPQ A + HYG ++ L+ +++
Sbjct: 69 RPLIVQFASHDPEEFALAAEMVSPLSDGVDLNCGCPQRWAIQEHYGCWMLSQPELVADMI 128
Query: 264 SSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
++R+ + VS KIRI D+ +VE+ R +E AG + +HGRT QR + ++
Sbjct: 129 RTMRRRLPNAYTVSVKIRIKDDLKDSVEFVRRMEAAGASFITIHGRTPAQRA---EVPNF 185
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWE 381
E + +R+A+ IPV+ NG ++ L + TGVAG+M A+G L NPALF G T
Sbjct: 186 EAVKILRQAVRIPVVHNGGVRSLEEARRIHEDTGVAGIMVAQGLLNNPALFAGHTHTPES 245
Query: 382 LASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLR 441
+YLD+ Y + + + HV M LL + + LL +D L
Sbjct: 246 CVQKYLDIATAYGTQFAHFQHHVTYMVKDLLPRADRHQMNLLCSYA-------AILDFLE 298
Query: 442 ERFI 445
ER I
Sbjct: 299 ERNI 302
>gi|403413532|emb|CCM00232.1| predicted protein [Fibroporia radiculosa]
Length = 324
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 145/254 (57%), Gaps = 12/254 (4%)
Query: 166 LLSRRYGSHLCYTPMVSAHQFIADKK-----LRQEILMSTPEDRPLIIQFCGNDSKNLTE 220
+L RRY + L YT M+ + + DK LR+ + P DRP+++Q CGND + +
Sbjct: 1 MLVRRYNASLVYTQMLLPDRLLNDKDYLDFHLRE---LGDPNDRPVVVQLCGNDPEIVVR 57
Query: 221 AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVSSLRQAVQVPVSCKI 278
A + + +CDGID+N+GCPQ A+ HYGAYL Q DWP++ ++VS++ + VPVS K+
Sbjct: 58 AGRCVQNYCDGIDLNLGCPQEAARDAHYGAYLLGQKDWPVVESMVSAMSHSFIVPVSTKL 117
Query: 279 RIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN 338
R+ Q V T+ A+ LE AG + +H RTV R G A E + ++ L +PV++N
Sbjct: 118 RLCQPVPATLVLAQHLEDAGAGWITLHARTVSARRRRQGAADLEQVRRLKDNLRVPVVSN 177
Query: 339 GNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYP--VR 396
GN++ D+ + TG G+M E L NP +F+G E++ EYLDL +P
Sbjct: 178 GNVRTWEDIASNRKMTGADGIMVGESMLANPCIFSGTVPDPVEISLEYLDLCRDHPHTAT 237
Query: 397 LQYARGHVFNMCHH 410
LQ + H+ + H
Sbjct: 238 LQTIQTHIRHFVDH 251
>gi|410910122|ref|XP_003968539.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Takifugu rubripes]
Length = 305
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 102/287 (35%), Positives = 157/287 (54%), Gaps = 6/287 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+L +R L R+Y +C+TPM+ A FI K R + +DRPLI+QF
Sbjct: 12 ICAPMVRYSKLAFRSLVRKYHCDVCFTPMIVASDFIRSTKARDSEFTTNQQDRPLIVQFA 71
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L +AA + P DG+D+N GCPQ A YGA L + L+ ++V+ +R V
Sbjct: 72 ANDAQTLADAACIVAPFSDGVDLNCGCPQRWAMSAGYGACLINKPELVKDMVTHVRNQVN 131
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI++D+ +TV+ + E AG + VHGRT ++R ++ I ++
Sbjct: 132 NPNYTVSIKIRIHKDLRRTVDLCQKAESAGVSWITVHGRTSEERHQP---VHYDAIKIIK 188
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
++++PVIANG+++ L DV++ TGV GVM A G L NPA+F G + +++D
Sbjct: 189 DSVSVPVIANGDVKYLRDVQSTYQLTGVDGVMVARGLLANPAMFAGFEDTPLKCIWDWVD 248
Query: 389 LVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRK 435
+ + H+ M + + PE L + I L+K
Sbjct: 249 ISIEQGTPFTCFHRHLIYMMERVSSQPERKIFNSLSSTSAVIDYLQK 295
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
I APMV S+L +R L R+Y +C+TPM+ A FI K R + +DRPLI+Q
Sbjct: 12 ICAPMVRYSKLAFRSLVRKYHCDVCFTPMIVASDFIRSTKARDSEFTTNQQDRPLIVQFA 71
Query: 142 I--FPRLGSPRFILAPMVDASEL----PWR-LLSRRYGSHLCYTP 179
L I+AP D +L P R +S YG+ L P
Sbjct: 72 ANDAQTLADAACIVAPFSDGVDLNCGCPQRWAMSAGYGACLINKP 116
>gi|320168879|gb|EFW45778.1| tRNA-dihydrouridine synthase 4-like protein [Capsaspora owczarzaki
ATCC 30864]
Length = 432
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 140/259 (54%), Gaps = 3/259 (1%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
P I APMV S+L +R L R +G L YTPM A FI K+ R + D P+I+
Sbjct: 83 PVRICAPMVRYSKLGFRELVRAFGCDLAYTPMTVAENFILSKRGRDNDFSTNEYDHPVIV 142
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
QF ++ L AA++ P+ DGIDIN GCPQ A YG+ L L+ ++V + +
Sbjct: 143 QFAAKHTEMLCTAAEMVAPYVDGIDINCGCPQRWAMSEGYGSALLRKPQLIYDMVRAAKS 202
Query: 269 AVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+ +PVS KIRI D KT+E A+ ERAG +AVHGRT R L E I AV+
Sbjct: 203 RITIPVSVKIRINLDFKKTIELAQTAERAGADWIAVHGRTPSMRHEPVIL---EGIKAVK 259
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
++IPV+ANG+I + DV A A TGV GVM+A G L NPALF G +++
Sbjct: 260 DNVSIPVVANGDINSMLDVNAVAAATGVDGVMSARGLLANPALFGGYAFAPASCLDKWIQ 319
Query: 389 LVAQYPVRLQYARGHVFNM 407
+ + HV NM
Sbjct: 320 IALSSRIPYSLFHTHVMNM 338
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 91/217 (41%), Gaps = 30/217 (13%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P I APMV S+L +R L R +G L YTPM A FI K+ R + D P+I+
Sbjct: 83 PVRICAPMVRYSKLGFRELVRAFGCDLAYTPMTVAENFILSKRGRDNDFSTNEYDHPVIV 142
Query: 139 QRTI--FPRLGSPRFILAPMVDASEL----PWR-LLSRRYGSHLCYTPMVSAHQFIADKK 191
Q L + ++AP VD ++ P R +S YGS L P Q I D
Sbjct: 143 QFAAKHTEMLCTAAEMVAPYVDGIDINCGCPQRWAMSEGYGSALLRKP-----QLIYDMV 197
Query: 192 LRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGA 250
+ ++ P + I D K E A+ AE D I ++ P M +
Sbjct: 198 RAAKSRITIPVSVKIRINL---DFKKTIELAQTAERAGADWIAVHGRTPSMRHE------ 248
Query: 251 YLQDDWPLLTNLVSSLRQAVQVPV--SCKIRIYQDVN 285
P++ + +++ V +PV + I DVN
Sbjct: 249 ------PVILEGIKAVKDNVSIPVVANGDINSMLDVN 279
>gi|321469164|gb|EFX80145.1| hypothetical protein DAPPUDRAFT_304174 [Daphnia pulex]
Length = 303
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 101/261 (38%), Positives = 145/261 (55%), Gaps = 6/261 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+LP+RLL R+YG L +TPM+ + FI K R + D+PLI+QF
Sbjct: 14 ICAPMVRYSKLPFRLLVRKYGCDLAFTPMIISDSFIQAPKARDIEFTTCDADQPLIVQFA 73
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV- 270
++S + AA+L C+G+D+N GCPQ A + YGA L + LL ++V R +
Sbjct: 74 AHNSTDFATAAELVASTCNGVDLNCGCPQKWAMQQGYGACLINKPELLRDVVLQTRNRIP 133
Query: 271 --QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
VS KIRI+ ++ KTVE + +E AG L VHGRT DQR L E + ++
Sbjct: 134 SNDFTVSIKIRIHPEIRKTVELCQQVEAAGLSFLTVHGRTKDQRSDPVNL---EGVKLIK 190
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+++ +PVIANG+I L D E T V GVM+A G L NPA+F G + E +++
Sbjct: 191 ESVRVPVIANGDICSLQDAEHVQQITNVNGVMSARGILENPAMFAGFSETPIECIKDWMK 250
Query: 389 LVAQYPVRLQYARGHVFNMCH 409
L + + + H+ MC
Sbjct: 251 LSLETGISFTHFHHHLIYMCE 271
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
I APMV S+LP+RLL R+YG L +TPM+ + FI K R + D+PLI+Q
Sbjct: 14 ICAPMVRYSKLPFRLLVRKYGCDLAFTPMIISDSFIQAPKARDIEFTTCDADQPLIVQ-- 71
Query: 142 IFPRLGSPRFILAPMVDAS 160
F S F A + AS
Sbjct: 72 -FAAHNSTDFATAAELVAS 89
>gi|449692251|ref|XP_002170616.2| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like,
partial [Hydra magnipapillata]
Length = 270
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 130/217 (59%), Gaps = 18/217 (8%)
Query: 270 VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK 329
+ P++CKIR+Y+ + KTV YA+ LERAG ++L VHGR DQ+G TGLASW+HI AV++
Sbjct: 7 ITKPITCKIRVYESIEKTVTYAKRLERAGAKILTVHGRRRDQKGPKTGLASWDHIKAVKE 66
Query: 330 ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDL 389
+ IPV ANGNIQ L DV CL T V G+M+AEG L NPA+F+G+ PAWE+A YL
Sbjct: 67 NVQIPVFANGNIQYLRDVIKCLEYTKVDGIMSAEGALCNPAIFSGRQPPAWEMADSYLAY 126
Query: 390 VAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFI---- 445
+Y + Y RGH+F + H L+ + D+R+ +G L++ ++E +
Sbjct: 127 AEKYTPPVGYIRGHLFRIYLHCLS--KYPDLRIPMGLARSFDALKEVCKQVKELCLKDAE 184
Query: 446 -DYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRP 481
D EG+ P LP W CQPYVRP
Sbjct: 185 KDIAEGKDSEEPD-----------CLPYWRCQPYVRP 210
>gi|405961217|gb|EKC27051.1| tRNA-dihydrouridine synthase 4-like protein [Crassostrea gigas]
Length = 317
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 103/269 (38%), Positives = 151/269 (56%), Gaps = 15/269 (5%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+LP+R L R+Y L +TPM+ ++ F+ K R + DRPLI+QF
Sbjct: 24 ICAPMVRYSKLPFRTLVRKYNCDLAFTPMIISNSFVHSVKARDSEFTTCSTDRPLIVQFA 83
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV- 270
N+ +L AA++ P+ DG+D+N GCPQ A YGA L L+ ++V+ R V
Sbjct: 84 ANNGNDLAAAAEIVSPYSDGVDLNCGCPQRWAMAEGYGACLIKKPELVRDMVNQTRARVC 143
Query: 271 --QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
VS KIRI+ D+ +TV+ + E AG +AVHGRT DQR + + I ++
Sbjct: 144 SSDFTVSIKIRIHNDLRETVDLCQKAEHAGVSWIAVHGRTKDQRAEPV---NKDAIKTIK 200
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
++L+IPVIANG+I+ L DVE A T V GVM A G L NPA+++G + +++D
Sbjct: 201 ESLSIPVIANGDIKSLQDVEEIQAVTKVDGVMAARGILQNPAMYSGFENTPLQCVQDWID 260
Query: 389 LVAQYPVRLQYARGHVFNMCH-HLLTLPE 416
+ A G + + H HL+ + E
Sbjct: 261 --------ISMASGMTYPIFHQHLIYMME 281
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
I APMV S+LP+R L R+Y L +TPM+ ++ F+ K R + DRPLI+Q
Sbjct: 24 ICAPMVRYSKLPFRTLVRKYNCDLAFTPMIISNSFVHSVKARDSEFTTCSTDRPLIVQFA 83
Query: 142 I--FPRLGSPRFILAPMVDASEL----PWR-LLSRRYGSHLCYTP 179
L + I++P D +L P R ++ YG+ L P
Sbjct: 84 ANNGNDLAAAAEIVSPYSDGVDLNCGCPQRWAMAEGYGACLIKKP 128
>gi|146421120|ref|XP_001486511.1| hypothetical protein PGUG_02182 [Meyerozyma guilliermondii ATCC
6260]
Length = 347
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/323 (32%), Positives = 167/323 (51%), Gaps = 15/323 (4%)
Query: 132 EDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK 191
E PL I + +LG P FI PMV S+LP+R L R Y + + YTPM+ A +F+ +
Sbjct: 14 EHNPLRIIKNAKSKLGRPAFIAGPMVRYSKLPFRELVRHYNTDIVYTPMILAREFVRNDV 73
Query: 192 LRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAY 251
R + P DR +I+Q N+ ++L + ++ P+ DGI +N GCP R GA
Sbjct: 74 ARASDFTTNPADRLVIVQVGCNNVEDLLKFVEMIHPYVDGIGLNCGCPIKEQVREGIGAA 133
Query: 252 LQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309
L + L++++V +++Q ++ + KIRI+ D+ +T+++ +M+E +G + VHGRT
Sbjct: 134 LMSEPELVSSMVKAVKQKYGDKICIETKIRIHPDIKETLKFVKMVEESGVDFITVHGRTK 193
Query: 310 DQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
+ R ++ + + I AV++A+ +PV+ANG+ L D TGV GVM G L NP
Sbjct: 194 NTR--SSVPVNLDAIKAVKEAVLVPVVANGDCFSLQDAYDIAEYTGVDGVMAVRGILANP 251
Query: 370 ALFTGQTRPAWELASEYLDLVAQY--PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT 427
ALF G W + DL Y P R+ + HHL + E + ++ +
Sbjct: 252 ALFAGYKSAPWSAVERFWDLATSYGLPFRI---------IQHHLSQMLEKKIPKKVLKEM 302
Query: 428 NHIKDLRKAVDMLRERFIDYHEG 450
N L +D FI +G
Sbjct: 303 NETTLLVDMIDWFDANFILRRKG 325
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 70 SDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+A ++LG P FI PMV S+LP+R L R Y + + YTPM+ A +F+ + R +
Sbjct: 22 KNAKSKLGRPAFIAGPMVRYSKLPFRELVRHYNTDIVYTPMILAREFVRNDVARASDFTT 81
Query: 130 TPEDRPLIIQ 139
P DR +I+Q
Sbjct: 82 NPADRLVIVQ 91
>gi|392560700|gb|EIW53882.1| FMN-linked oxidoreductase [Trametes versicolor FP-101664 SS1]
Length = 360
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 102/270 (37%), Positives = 150/270 (55%), Gaps = 12/270 (4%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE---ILMSTPEDRPLII 208
I APMV+ S+LP+R+L RRY + L YT M+ + + D++ + L P D P+++
Sbjct: 11 IAAPMVNQSDLPFRILVRRYNTSLAYTQMLVPERLLEDQEYLESHTRGLRDGP-DSPVVV 69
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGI----DINIGCPQMVAKRGHYGAYLQD--DWPLLTNL 262
Q CGND + + +AA+ D I D+N+GCPQ A+ G YG YL D DWPL+ ++
Sbjct: 70 QLCGNDPEIVLKAARTVVDRVDAIGAYIDLNLGCPQEAAREGQYGGYLLDKKDWPLVESM 129
Query: 263 VSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
VS+L ++ VPVS K+R+ Q+ + T E A LE AG L +H R V R G A
Sbjct: 130 VSALSHSLPVPVSAKLRLCQNTSSTPELAARLETAGASWLTLHARHVSSRRRRQGAADLS 189
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWEL 382
+ +++ + IPV++NGN++ DV+ TG GVM L NP LF T ++
Sbjct: 190 QVRILKEHVRIPVVSNGNVRAWEDVQRNREDTGADGVMVGVTLLANPCLFADITPDPVQI 249
Query: 383 ASEYLDLVAQYP--VRLQYARGHVFNMCHH 410
+ EYLD+ YP LQ + HV + H
Sbjct: 250 SLEYLDICKDYPGTATLQTIQTHVRHFVDH 279
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE---ILMSTPEDRPLII 138
I APMV+ S+LP+R+L RRY + L YT M+ + + D++ + L P D P+++
Sbjct: 11 IAAPMVNQSDLPFRILVRRYNTSLAYTQMLVPERLLEDQEYLESHTRGLRDGP-DSPVVV 69
Query: 139 Q 139
Q
Sbjct: 70 Q 70
>gi|291239208|ref|XP_002739522.1| PREDICTED: dihydrouridine synthase 4-like [Saccoglossus
kowalevskii]
Length = 367
Score = 178 bits (452), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 162/304 (53%), Gaps = 14/304 (4%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+L +R L R+YG + +TPM+ + FI K R + D+PLI+QF
Sbjct: 35 ISAPMVRYSKLAFRTLVRKYGCDVTFTPMIVSDSFIKSIKARDNEFSTHKGDQPLIVQFA 94
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
N++K+ A +L P DG+D+N GCPQ A +GA L L+ ++V R +Q
Sbjct: 95 ANNTKDFVTATELIAPFADGVDLNCGCPQRWAMANGFGANLIKHPELVKDMVQQTRNKIQ 154
Query: 272 ---VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
VS KIR+ ++ T++ + E AG + VHGRT +QR T ++E I ++
Sbjct: 155 DEKFSVSIKIRLRHNLRDTLDLCQKAEHAGVSWITVHGRTTEQR---TEPVNYEDIKIIK 211
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ L+IPVIANG+++ L DV T V GVM A G L+NPA++ G E +++D
Sbjct: 212 ENLSIPVIANGDVKSLKDVNRVHELTKVDGVMAARGMLHNPAMYAGYEFTPLECIQDWVD 271
Query: 389 LVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF-IDY 447
+ Q + Q H+ M H+ + +D R+ N + ++ +D L+E + + Y
Sbjct: 272 ISLQLGTQFQCFHHHLIQMMEHVTS---KADKRIF----NTLSNVPAVLDYLQEHYQVSY 324
Query: 448 HEGR 451
+ R
Sbjct: 325 NPAR 328
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 13/108 (12%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
I APMV S+L +R L R+YG + +TPM+ + FI K R + D+PLI+Q
Sbjct: 35 ISAPMVRYSKLAFRTLVRKYGCDVTFTPMIVSDSFIKSIKARDNEFSTHKGDQPLIVQ-- 92
Query: 142 IFPRLGSPRFI-----LAPMVDASEL----PWR-LLSRRYGSHLCYTP 179
F + F+ +AP D +L P R ++ +G++L P
Sbjct: 93 -FAANNTKDFVTATELIAPFADGVDLNCGCPQRWAMANGFGANLIKHP 139
>gi|225715276|gb|ACO13484.1| tRNA-dihydrouridine synthase 4-like PP35 [Esox lucius]
Length = 320
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 99/268 (36%), Positives = 146/268 (54%), Gaps = 6/268 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+L +R L R+Y +C+TPM+ A F+ K R + DRPLI+QF
Sbjct: 24 ICAPMVRYSKLAFRSLVRKYDCDICFTPMIVAPDFLRSVKARDSEFTTNKADRPLIVQFA 83
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
+D++ L +AA + P DG+D+N GCPQ A YGA L + L+ ++V +R V
Sbjct: 84 ASDAQTLADAACVVAPFSDGVDLNCGCPQRWAMSEGYGACLINKPELVKDMVRHVRNQVD 143
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P S KIRI++++ +TV+ + E AG + VHGRT ++R ++ I ++
Sbjct: 144 NPNYTTSIKIRIHKELRRTVDMCQKAEAAGVSWITVHGRTAEERHQP---VHFDAIKTIK 200
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+L++PVIANG+I+ L DVE TGV GVM A G L NPA+F G E +++D
Sbjct: 201 DSLSVPVIANGDIKSLQDVETTHQLTGVDGVMAARGLLANPAMFAGYNETPLECVWDWVD 260
Query: 389 LVAQYPVRLQYARGHVFNMCHHLLTLPE 416
L H+ M + + PE
Sbjct: 261 LATDQGTPFTCFHQHLIYMLERVCSQPE 288
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ-- 139
I APMV S+L +R L R+Y +C+TPM+ A F+ K R + DRPLI+Q
Sbjct: 24 ICAPMVRYSKLAFRSLVRKYDCDICFTPMIVAPDFLRSVKARDSEFTTNKADRPLIVQFA 83
Query: 140 RTIFPRLGSPRFILAPMVDASEL----PWR-LLSRRYGSHLCYTP 179
+ L ++AP D +L P R +S YG+ L P
Sbjct: 84 ASDAQTLADAACVVAPFSDGVDLNCGCPQRWAMSEGYGACLINKP 128
>gi|336375552|gb|EGO03888.1| hypothetical protein SERLA73DRAFT_119513 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388669|gb|EGO29813.1| hypothetical protein SERLADRAFT_365819 [Serpula lacrymans var.
lacrymans S7.9]
Length = 245
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 138/225 (61%), Gaps = 7/225 (3%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKL----RQEILMSTPE-DRPL 206
I APMV+ S+LP+R+L+R+YG+ + YT M+ + I D+ +++I S +RP+
Sbjct: 9 ISAPMVNQSDLPFRILTRKYGATVAYTQMLIPEKLINDQAYLDFNQRDICGSAGGLERPV 68
Query: 207 IIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVS 264
++Q CGND + + +A + + +CD ID+N+GCPQ A+ GH+G YL Q DWPL+ +VS
Sbjct: 69 VVQLCGNDPETIVKAGRKLQSYCDAIDLNLGCPQDHARDGHFGGYLLGQKDWPLVEGIVS 128
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
++ + VPVS KIR+ QD KTV+ A+ +E AG + +H R V R G A I
Sbjct: 129 AMSNSFTVPVSAKIRLCQDTPKTVDLAKRIESAGASWVTLHARHVSARRRRQGAADLYEI 188
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
+++ L IPV++NGN++ AD+E TG G M E L NP
Sbjct: 189 KRLKEQLHIPVVSNGNVRTWADLEENRTFTGADGYMVGETLLGNP 233
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 41/63 (65%), Gaps = 5/63 (7%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKL----RQEILMSTPE-DRPL 136
I APMV+ S+LP+R+L+R+YG+ + YT M+ + I D+ +++I S +RP+
Sbjct: 9 ISAPMVNQSDLPFRILTRKYGATVAYTQMLIPEKLINDQAYLDFNQRDICGSAGGLERPV 68
Query: 137 IIQ 139
++Q
Sbjct: 69 VVQ 71
>gi|73981937|ref|XP_540383.2| PREDICTED: tRNA-dihydrouridine synthase 4-like [Canis lupus
familiaris]
Length = 317
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 142/244 (58%), Gaps = 6/244 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+YG LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYGCDLCYTPMIVAADFVRSIKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 90 ANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVRDMVKQVRNQVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +T++ R E G + VHGRTV++R +E I ++
Sbjct: 150 NPRFSVSIKIRIHDDLTRTIDLCRKAEATGVSWITVHGRTVEERHQPV---HYEAIKIIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IPVIANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 207 ENMSIPVIANGDIRSLKEAENVWHITGTDGVMVARGLLANPAMFAGYNETPLQCIWDWID 266
Query: 389 LVAQ 392
+ +
Sbjct: 267 IALE 270
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+YG LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYGCDLCYTPMIVAADFVRSIKARDSEFTTNQGDCPLIVQ 87
>gi|229366234|gb|ACQ58097.1| tRNA-dihydrouridine synthase 4-like PP35 [Anoplopoma fimbria]
Length = 318
Score = 178 bits (451), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 97/268 (36%), Positives = 150/268 (55%), Gaps = 6/268 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+L +R L R+Y +C++PM+ A F+ K R + DRPLI+QF
Sbjct: 25 ICAPMVRYSKLAFRSLVRKYDCDICFSPMIVASDFMRSVKARDSEFTTNESDRPLIVQFA 84
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
D++ L +AA + P DG+D+N GCPQ A +GA L + L+ ++V +R V
Sbjct: 85 APDAQTLADAACVVAPFSDGVDLNCGCPQRWAMSAGFGACLINKPELVKDMVRHVRNQVD 144
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P S KIRI++D+ +TV+ + E AG + VHGRT ++R +++ I ++
Sbjct: 145 NPNYTASIKIRIHKDLRQTVDLCQKAESAGVSWITVHGRTAEERHQPV---NYDAIKTIK 201
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+++IPVIANG+I+ L DVE+ TGV GVM A G L NPA+F+G E +++D
Sbjct: 202 DSVSIPVIANGDIKHLRDVESTYQLTGVDGVMAARGLLTNPAMFSGYEDTPLECIWDWVD 261
Query: 389 LVAQYPVRLQYARGHVFNMCHHLLTLPE 416
+ + + H+ M + + PE
Sbjct: 262 IAIEQGTQFTCFHHHLIYMLERVSSQPE 289
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
I APMV S+L +R L R+Y +C++PM+ A F+ K R + DRPLI+Q
Sbjct: 25 ICAPMVRYSKLAFRSLVRKYDCDICFSPMIVASDFMRSVKARDSEFTTNESDRPLIVQFA 84
Query: 142 I--FPRLGSPRFILAPMVDASEL----PWR-LLSRRYGSHLCYTP 179
L ++AP D +L P R +S +G+ L P
Sbjct: 85 APDAQTLADAACVVAPFSDGVDLNCGCPQRWAMSAGFGACLINKP 129
>gi|349501068|ref|NP_001007929.2| tRNA-dihydrouridine synthase 4-like [Xenopus (Silurana) tropicalis]
Length = 315
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 159/297 (53%), Gaps = 15/297 (5%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+L +R L R+Y LCYTPM+ A F+ K R + DRPLI+QF
Sbjct: 27 ICAPMVRYSKLAFRTLVRKYDCDLCYTPMIIAADFVKSVKARDSEFTTNQGDRPLIVQFA 86
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
+++ L +AA L P GID+N GCPQ A YGA L ++ L++++V +R V
Sbjct: 87 AKEAQVLADAASLVSPFASGIDLNCGCPQRWAMAEGYGACLINNPELVSDMVKQVRNQVG 146
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P +S KIRI+ D+++TV+ R E AG + VHGRT D+R ++ I +++
Sbjct: 147 DPGFTISIKIRIHADISRTVDLCRKAEAAGVSWITVHGRTHDERHQPV---HYDAIKSIK 203
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
++L+IPV+ANG+++ L + E TG GVM A G L NPA+F G +++D
Sbjct: 204 ESLSIPVVANGDVKSLKEAENIREITGADGVMAARGLLANPAMFAGYEETPLACIQDWID 263
Query: 389 LVAQYPVRLQYARGHVFN-MCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
+ ++ G F + HHL+ + E + N + +D LR+ +
Sbjct: 264 ITLEH--------GTPFTCLHHHLIYMMERITSKQEKRVFNVLSSTSAVLDYLRDHY 312
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
I APMV S+L +R L R+Y LCYTPM+ A F+ K R + DRPLI+Q
Sbjct: 27 ICAPMVRYSKLAFRTLVRKYDCDLCYTPMIIAADFVKSVKARDSEFTTNQGDRPLIVQ 84
>gi|89266831|emb|CAJ83965.1| dihydrouridine synthase 4-like (S. cerevisiae) [Xenopus (Silurana)
tropicalis]
Length = 324
Score = 177 bits (450), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 159/297 (53%), Gaps = 15/297 (5%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+L +R L R+Y LCYTPM+ A F+ K R + DRPLI+QF
Sbjct: 36 ICAPMVRYSKLAFRTLVRKYDCDLCYTPMIIAADFVKSVKARDSEFTTNQGDRPLIVQFA 95
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
+++ L +AA L P GID+N GCPQ A YGA L ++ L++++V +R V
Sbjct: 96 AKEAQVLADAASLVSPFASGIDLNCGCPQRWAMAEGYGACLINNPELVSDMVKQVRNQVG 155
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P +S KIRI+ D+++TV+ R E AG + VHGRT D+R ++ I +++
Sbjct: 156 DPGFTISIKIRIHADISRTVDLCRKAEAAGVSWITVHGRTHDERHQPV---HYDAIKSIK 212
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
++L+IPV+ANG+++ L + E TG GVM A G L NPA+F G +++D
Sbjct: 213 ESLSIPVVANGDVKSLKEAENIREITGADGVMAARGLLANPAMFAGYEETPLACIQDWID 272
Query: 389 LVAQYPVRLQYARGHVFN-MCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
+ ++ G F + HHL+ + E + N + +D LR+ +
Sbjct: 273 ITLEH--------GTPFTCLHHHLIYMMERITSKQEKRVFNVLSSTSAVLDYLRDHY 321
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
I APMV S+L +R L R+Y LCYTPM+ A F+ K R + DRPLI+Q
Sbjct: 36 ICAPMVRYSKLAFRTLVRKYDCDLCYTPMIIAADFVKSVKARDSEFTTNQGDRPLIVQ 93
>gi|51513200|gb|AAH80375.1| MGC79829 protein [Xenopus (Silurana) tropicalis]
Length = 308
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 159/297 (53%), Gaps = 15/297 (5%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+L +R L R+Y LCYTPM+ A F+ K R + DRPLI+QF
Sbjct: 20 ICAPMVRYSKLAFRTLVRKYDCDLCYTPMIIAADFVKSVKARDSEFTTNQGDRPLIVQFA 79
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
+++ L +AA L P GID+N GCPQ A YGA L ++ L++++V +R V
Sbjct: 80 AKEAQVLADAASLVSPFASGIDLNCGCPQRWAMAEGYGACLINNPELVSDMVKQVRNQVG 139
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P +S KIRI+ D+++TV+ R E AG + VHGRT D+R ++ I +++
Sbjct: 140 DPGFTISIKIRIHADISRTVDLCRKAEAAGVSWITVHGRTHDERHQPV---HYDAIKSIK 196
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
++L+IPV+ANG+++ L + E TG GVM A G L NPA+F G +++D
Sbjct: 197 ESLSIPVVANGDVKSLKEAENIREITGADGVMAARGLLANPAMFAGYEETPLACIQDWID 256
Query: 389 LVAQYPVRLQYARGHVFN-MCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
+ ++ G F + HHL+ + E + N + +D LR+ +
Sbjct: 257 ITLEH--------GTPFTCLHHHLIYMMERITSKQEKRVFNVLSSTSAVLDYLRDHY 305
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
I APMV S+L +R L R+Y LCYTPM+ A F+ K R + DRPLI+Q
Sbjct: 20 ICAPMVRYSKLAFRTLVRKYDCDLCYTPMIIAADFVKSVKARDSEFTTNQGDRPLIVQ 77
>gi|443707642|gb|ELU03155.1| hypothetical protein CAPTEDRAFT_112268 [Capitella teleta]
Length = 307
Score = 177 bits (450), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 105/297 (35%), Positives = 156/297 (52%), Gaps = 15/297 (5%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+LP+R L R Y + +TPM+ + F K R + D PLI+QF
Sbjct: 19 ICAPMVRYSKLPFRTLVRNYDCDIAFTPMIVSESFNQSIKARHSDFTTNSGDGPLIVQFA 78
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
+ +K+ +AA++ P+ DG+D+N GCPQ A + YG L LL + V RQ +
Sbjct: 79 ASQAKDFADAAEIVVPYADGVDLNCGCPQKWAMQEGYGCALLKKPELLHDSVLQARQRID 138
Query: 272 ---VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+S KIRI D+ +TVE R E+ ++VHGRTVDQR T +E I V+
Sbjct: 139 NNDFTISIKIRINSDLKETVELCRRAEKVRASFISVHGRTVDQR---TQPVDYEAIKVVK 195
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
++IPV+ANG++ LA+ + TGV GVM+A G L NPA++ G + +++D
Sbjct: 196 DCVSIPVVANGDLTTLAECQKVRDITGVDGVMSARGILANPAMYAGFDETPLQCLQDWVD 255
Query: 389 LVAQYPVRLQYARGHVFNMC-HHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
+ + G FN+ HHL+ + EN R N + +D LRE++
Sbjct: 256 ISLE--------TGVSFNLFHHHLIYMLENLTCRAEKRLFNSLSSTAAVLDFLREKY 304
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 21/147 (14%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
I APMV S+LP+R L R Y + +TPM+ + F K R + D PLI+Q
Sbjct: 19 ICAPMVRYSKLPFRTLVRNYDCDIAFTPMIVSESFNQSIKARHSDFTTNSGDGPLIVQ-- 76
Query: 142 IFPRLGSPRF-----ILAPMVDASEL------PWRLLSRRYGSHLCYTP------MVSAH 184
F + F I+ P D +L W + YG L P ++ A
Sbjct: 77 -FAASQAKDFADAAEIVVPYADGVDLNCGCPQKW-AMQEGYGCALLKKPELLHDSVLQAR 134
Query: 185 QFIADKKLRQEILMSTPEDRPLIIQFC 211
Q I + I + D ++ C
Sbjct: 135 QRIDNNDFTISIKIRINSDLKETVELC 161
>gi|403257051|ref|XP_003921151.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Saimiri boliviensis boliviensis]
Length = 307
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 142/244 (58%), Gaps = 6/244 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 20 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFA 79
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V+ +R V+
Sbjct: 80 ANDARLLSDAARIVSPYANGIDINCGCPQRWAMAEGYGACLINKPELVRDMVTQVRNQVE 139
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +TV+ R E G + VHGRTV++R ++ I ++
Sbjct: 140 NPGFSVSIKIRIHDDLKRTVDLCRKAEATGVSWITVHGRTVEERHQPV---HYDSIKIIK 196
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IPVIANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 197 ENMSIPVIANGDIRSLKEAENVWQITGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVD 256
Query: 389 LVAQ 392
+ +
Sbjct: 257 IALE 260
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 20 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQ 77
>gi|389747721|gb|EIM88899.1| FMN-linked oxidoreductase [Stereum hirsutum FP-91666 SS1]
Length = 263
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 150/245 (61%), Gaps = 8/245 (3%)
Query: 156 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKL----RQEILMSTPEDRPLIIQFC 211
M++ S+LP+RLL+R +G+ L YT M+ + + D++ ++E+ M +RP+++Q C
Sbjct: 1 MINQSDLPFRLLARSHGATLAYTQMLIPERILNDQEYLEFHQRELGMQV--ERPVVVQVC 58
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVSSLRQA 269
GN+ +++ +AAK CDG+D+N+GCPQ A+ GHYGAYL Q DWPL+ +LVSSL Q+
Sbjct: 59 GNEVESVVQAAKKMVGLCDGVDLNLGCPQEAAREGHYGAYLLGQKDWPLVESLVSSLVQS 118
Query: 270 VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK 329
+ +PVS K+R+ Q TV A+ LE AG + +H R R G A E + +++
Sbjct: 119 LPIPVSTKLRLCQPTPSTVTLAKRLEHAGSSWITLHARHSSARRRRQGAADLEQVRILKE 178
Query: 330 ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDL 389
A++IPV++NGN++ DV TG G+M E L NP LF G +++ EYL +
Sbjct: 179 AVSIPVVSNGNVRTWDDVVKNEELTGADGIMVGETLLGNPCLFEGMVPDPVQISLEYLSI 238
Query: 390 VAQYP 394
+P
Sbjct: 239 CRDHP 243
>gi|149704573|ref|XP_001491222.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Equus caballus]
gi|335772672|gb|AEH58139.1| tRNA-dihydrouridine synthase 4-like-like protein [Equus caballus]
Length = 317
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 139/241 (57%), Gaps = 6/241 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 90 ANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +TV+ R E G + VHGRTV++R +E I ++
Sbjct: 150 NPRFSVSIKIRIHDDLTRTVDLCRKAEATGVSWITVHGRTVEERHQPV---HYEAIKIIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+IPVIANG+I+ L + E TG GVM A G L NPA+F G + S+++D
Sbjct: 207 DNASIPVIANGDIRSLKEAENVRHITGTDGVMVARGLLANPAMFAGYEETPLKCVSDWVD 266
Query: 389 L 389
+
Sbjct: 267 I 267
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQ 87
>gi|260818049|ref|XP_002603897.1| hypothetical protein BRAFLDRAFT_129997 [Branchiostoma floridae]
gi|229289221|gb|EEN59908.1| hypothetical protein BRAFLDRAFT_129997 [Branchiostoma floridae]
Length = 347
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/326 (33%), Positives = 167/326 (51%), Gaps = 20/326 (6%)
Query: 127 LMSTPEDRPLIIQRTIFPRL---GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSA 183
+ P D P R L G + APMV S+LP+R L RRY L ++PM+ A
Sbjct: 1 MAQVPNDLPPATGRVPVVELFQSGKVVHVCAPMVRYSKLPFRALVRRYNCDLAFSPMIIA 60
Query: 184 HQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVA 243
F+ K R + DRPL++QF D L +AA++ P+ DG+D+N GCPQ A
Sbjct: 61 ESFVKSLKARDSEFTTNSADRPLVVQFAARDGVTLADAAEIVAPYSDGVDLNCGCPQRWA 120
Query: 244 KRGHYGAYLQDDWPLLTNLVSSLRQAV---QVPVSCKIRIYQDVNKTVEYARMLERAGCQ 300
YG+ L + L++++V + V VS KIR+++D+ +TV+ + E AG
Sbjct: 121 MAEGYGSCLLKNPELVSDMVRQAKARVSDKDFSVSIKIRLHKDLRETVDMCQKAEHAGVS 180
Query: 301 LLAVHGRTVDQRG--MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358
+AVHGRT QRG +NT E I+ ++++L+IPVIANG+I+ L DV+ + TGV G
Sbjct: 181 WIAVHGRTPSQRGEPVNT-----EAISLIKQSLSIPVIANGDIKNLEDVKRVQSLTGVDG 235
Query: 359 VMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENS 418
VM A G L NP ++ G + + +++D+ + H HHL+ + E
Sbjct: 236 VMAARGILQNPGMYAGYDQTPLQCVQDWVDISLKLGT-------HFTCFHHHLMYMFERV 288
Query: 419 DVRLLVGKTNHIKDLRKAVDMLRERF 444
+ N + +D L E +
Sbjct: 289 TPKSEKRVFNALTSTAAVLDYLEEHY 314
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 73/168 (43%), Gaps = 15/168 (8%)
Query: 59 VPKDCHSSTARSDA--WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQF 116
VP D +T R Q G + APMV S+LP+R L RRY L ++PM+ A F
Sbjct: 4 VPNDLPPATGRVPVVELFQSGKVVHVCAPMVRYSKLPFRALVRRYNCDLAFSPMIIAESF 63
Query: 117 IADKKLRQEILMSTPEDRPLIIQRTIFP--RLGSPRFILAPMVDASEL----PWR-LLSR 169
+ K R + DRPL++Q L I+AP D +L P R ++
Sbjct: 64 VKSLKARDSEFTTNSADRPLVVQFAARDGVTLADAAEIVAPYSDGVDLNCGCPQRWAMAE 123
Query: 170 RYGSHLCYTP-MVS-----AHQFIADKKLRQEILMSTPEDRPLIIQFC 211
YGS L P +VS A ++DK I + +D + C
Sbjct: 124 GYGSCLLKNPELVSDMVRQAKARVSDKDFSVSIKIRLHKDLRETVDMC 171
>gi|432890721|ref|XP_004075495.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Oryzias latipes]
Length = 320
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 156/301 (51%), Gaps = 13/301 (4%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y +C+TPM+ A F+ K R + DRPLI+QF
Sbjct: 22 MCAPMVRYSKLAFRSLVRKYSCDVCFTPMIIAADFLRSVKARDSEFTTNKSDRPLIVQFA 81
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
D + L +AA + P DG+D+N GCPQ A YGA L + L+ ++V +R V
Sbjct: 82 AQDPQTLADAACVVAPFSDGVDLNCGCPQRWAMSAGYGACLINKPELVEDMVRHVRNQVD 141
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI++D+ +TV+ + E AG + VHGRT ++R ++ I ++
Sbjct: 142 NPDYTVSIKIRIHKDLRQTVDLCQKAESAGVSWITVHGRTTEERHQPV---HYDAIKTIK 198
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
++++PVIANG+I+ L DVE+ TGV GVM A G L NPA+F G + +++D
Sbjct: 199 DSVSVPVIANGDIKYLRDVESTHQHTGVNGVMAARGLLANPAMFAGYEDTPLQCIWDWVD 258
Query: 389 LVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFIDYH 448
+ + H+ M + + PE N + +D L+ + H
Sbjct: 259 IAVEQGTPFSCFHHHLIYMLERVSSQPERK-------VFNSLSSTSAVIDYLQNTYGSIH 311
Query: 449 E 449
+
Sbjct: 312 D 312
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
+ APMV S+L +R L R+Y +C+TPM+ A F+ K R + DRPLI+Q
Sbjct: 22 MCAPMVRYSKLAFRSLVRKYSCDVCFTPMIIAADFLRSVKARDSEFTTNKSDRPLIVQFA 81
Query: 142 IFP--RLGSPRFILAPMVDASEL----PWR-LLSRRYGSHLCYTP 179
L ++AP D +L P R +S YG+ L P
Sbjct: 82 AQDPQTLADAACVVAPFSDGVDLNCGCPQRWAMSAGYGACLINKP 126
>gi|296209951|ref|XP_002751783.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Callithrix jacchus]
Length = 317
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/244 (38%), Positives = 142/244 (58%), Gaps = 6/244 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNRGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V+ +R V+
Sbjct: 90 ANDARVLSDAARIVSPYANGIDINCGCPQRWAMAEGYGACLINKPELVRDMVTQVRNQVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +TV+ R E G + VHGRTV++R ++ I ++
Sbjct: 150 SPGFSVSIKIRIHDDLKRTVDLCRKAEAIGVSWITVHGRTVEERHQPV---HYDSIKIIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IPVIANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 207 ENMSIPVIANGDIRSLKEAENVWQITGTDGVMVARGLLTNPAMFAGYEETPLKCIWDWVD 266
Query: 389 LVAQ 392
+ +
Sbjct: 267 IALE 270
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNRGDCPLIVQ 87
>gi|170572143|ref|XP_001891998.1| tRNA-dihydrouridine synthase 4 [Brugia malayi]
gi|158603133|gb|EDP39179.1| tRNA-dihydrouridine synthase 4, putative [Brugia malayi]
Length = 321
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 153/289 (52%), Gaps = 19/289 (6%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
P F+ APMV S+LP+R+L R Y + +TPM+ A FIA ++ R + P D P ++
Sbjct: 30 PLFVSAPMVRYSKLPFRMLVRLYSVDVAFTPMIYAKHFIASEQCRSAEFTTCPGDNPTVV 89
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
QF N+ + + AA +C GID+N GCPQ R YG+ L D + ++VS+ R+
Sbjct: 90 QFASNEPEEFSTAAMFISRYCRGIDLNCGCPQRDVMREGYGSSLLTDPVRIADIVSTTRR 149
Query: 269 AVQVP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+ P +S KIR+ + T+E R ERAG + VHGRT +QR + A ++ I
Sbjct: 150 RISRPDFTISIKIRLKPNRQLTLETCRQAERAGVSFVTVHGRTPEQR---SEPADYDMIK 206
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
++ +L+IPVIANGNI+ + TGV GVM+A G L NPA+F G T + ++
Sbjct: 207 LIKSSLSIPVIANGNIKSYEQALQVVKYTGVDGVMSANGLLENPAMFAGYTSTPKQCVAD 266
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDV-----RLLVGKTNH 429
+ VRL G F++ H L S + + G +NH
Sbjct: 267 W--------VRLATEHGCPFDLFHQQLMFMLRSSLTSRQRTMFNGLSNH 307
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P F+ APMV S+LP+R+L R Y + +TPM+ A FIA ++ R + P D P ++
Sbjct: 30 PLFVSAPMVRYSKLPFRMLVRLYSVDVAFTPMIYAKHFIASEQCRSAEFTTCPGDNPTVV 89
Query: 139 Q 139
Q
Sbjct: 90 Q 90
>gi|350588960|ref|XP_003357562.2| PREDICTED: tRNA-dihydrouridine synthase 4-like, partial [Sus
scrofa]
Length = 298
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 142/244 (58%), Gaps = 6/244 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 7 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQFA 66
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 67 ANDARLLSDAARIVCPYANGIDINCGCPQRWALAEGYGACLINKPELVKDMVKQVRNQVE 126
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +TV+ R E G + VHGRTV++R +E I ++
Sbjct: 127 NPRFSVSIKIRIHSDLTRTVDLCRKAEATGVSWITVHGRTVEERHQPV---HYEAIKIIK 183
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
++++IPVIANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 184 ESMSIPVIANGDIRSLKEAENVWHMTGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVD 243
Query: 389 LVAQ 392
+ +
Sbjct: 244 IALE 247
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 7 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQ 64
>gi|348508270|ref|XP_003441677.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Oreochromis
niloticus]
Length = 315
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/303 (33%), Positives = 158/303 (52%), Gaps = 13/303 (4%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+L +R L R+Y +C+TPM+ A F+ K R + DRPLI+QF
Sbjct: 22 ICAPMVRYSKLAFRSLVRKYNCDICFTPMIVAADFLRSIKARDSEFTTNERDRPLIVQFA 81
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
+D+++L +AA P DG+D+N GCPQ A YGA L + L+ ++V +R V
Sbjct: 82 AHDAQSLADAACAVAPFSDGVDLNCGCPQRWAMSAGYGACLINKPELVKDMVRHVRNQVD 141
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P S KIRI++D+ +TV+ + E AG + VHGRT ++R ++ I ++
Sbjct: 142 NPNYTASIKIRIHKDLKQTVDLCQKAESAGVSWITVHGRTTEERHQPV---HYDAIKTIK 198
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
++++PVIANG+I+ L DVE+ TGV GVM A G L NPA+F G + +++D
Sbjct: 199 DSVSVPVIANGDIKYLRDVESTHELTGVDGVMAARGLLANPAMFAGYEDTPLQCIWDWVD 258
Query: 389 LVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFIDYH 448
+ + H+ M + + PE N + +D L+ + H
Sbjct: 259 IAVEQGTPFTCFHHHLIYMLERVSSQPERKVF-------NSLSSTSAVIDYLQNTYGSVH 311
Query: 449 EGR 451
+ R
Sbjct: 312 DLR 314
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 61 KDCHSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK 120
K + +T+ D + + G I APMV S+L +R L R+Y +C+TPM+ A F+
Sbjct: 2 KTANGNTSVMDMFEK-GKVLKICAPMVRYSKLAFRSLVRKYNCDICFTPMIVAADFLRSI 60
Query: 121 KLRQEILMSTPEDRPLIIQRTIFP--RLGSPRFILAPMVDASEL----PWR-LLSRRYGS 173
K R + DRPLI+Q L +AP D +L P R +S YG+
Sbjct: 61 KARDSEFTTNERDRPLIVQFAAHDAQSLADAACAVAPFSDGVDLNCGCPQRWAMSAGYGA 120
Query: 174 HLCYTP 179
L P
Sbjct: 121 CLINKP 126
>gi|150866685|ref|XP_001386359.2| dihydrouridine synthase [Scheffersomyces stipitis CBS 6054]
gi|149387941|gb|ABN68330.2| dihydrouridine synthase [Scheffersomyces stipitis CBS 6054]
Length = 369
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/344 (29%), Positives = 172/344 (50%), Gaps = 15/344 (4%)
Query: 121 KLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPM 180
K + I PE PL I + + P F+ PMV S+LP+R L R Y + + YTPM
Sbjct: 25 KTKHTISPRNPEHNPLYILKNVRKTQNRPAFVAGPMVRYSKLPFRELVRNYNTDIVYTPM 84
Query: 181 VSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQ 240
+ A +F+ + R + +DR +I+Q N+ ++L + ++ P+ DGI +N GCP
Sbjct: 85 ILAREFVRNDIARSSDFTTNDKDRCVIVQVGSNNVEDLLKFVEMIHPYVDGIGLNCGCPI 144
Query: 241 MVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAG 298
R GA L + L+ ++V ++++ V + KIRI+ ++++T+ + + +E +G
Sbjct: 145 KEQVREGIGAALMSEPDLVASMVKAVKEKYGNTVCIETKIRIHPNLDETIAFVKKVEASG 204
Query: 299 CQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358
+ VHGRT + R ++ A+W+ I +++ +++PV+ANG+ L D + TGV G
Sbjct: 205 VDFITVHGRTKNTR--SSQPANWDAIKLIKETVSVPVVANGDCFSLEDAYSIAEHTGVDG 262
Query: 359 VMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQY--PVRLQYARGHVFNMCHHLLTLPE 416
VM+A G L NPALF G + W + DL Y P R+ + HHL + +
Sbjct: 263 VMSARGILSNPALFAGYKKTPWAAVEFFWDLATSYGLPFRI---------IQHHLSEMLD 313
Query: 417 NSDVRLLVGKTNHIKDLRKAVDMLRERFIDYHEGRKLWPPPNYP 460
R + + N L +D FI G K + P
Sbjct: 314 KVIPRKSLKEMNETTCLIDMIDWFDTHFILKRRGDKGFATATEP 357
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P F+ PMV S+LP+R L R Y + + YTPM+ A +F+ + R + +DR +I+
Sbjct: 53 PAFVAGPMVRYSKLPFRELVRNYNTDIVYTPMILAREFVRNDIARSSDFTTNDKDRCVIV 112
Query: 139 Q 139
Q
Sbjct: 113 Q 113
>gi|440901315|gb|ELR52288.1| tRNA-dihydrouridine synthase 4-like protein, partial [Bos grunniens
mutus]
Length = 323
Score = 176 bits (446), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 142/244 (58%), Gaps = 6/244 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 35 VCAPMVRYSKLSFRTLVRKYDCDLCYTPMIVAADFVRSAKARDSEFTTNQGDCPLIVQFA 94
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 95 ANDARLLSDAARIVCPYANGIDINCGCPQRWALAEGYGACLINKPELVRDMVKQVRNQVE 154
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +TV+ R E G + VHGRTV++R +E I ++
Sbjct: 155 NPRFSVSIKIRIHDDLTRTVDLCRKAEATGVSWITVHGRTVEERHQPV---HYEAIKIIK 211
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
++++IP++ANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 212 ESMSIPIVANGDIRSLKEAENVWHTTGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVD 271
Query: 389 LVAQ 392
+ +
Sbjct: 272 IALE 275
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 35 VCAPMVRYSKLSFRTLVRKYDCDLCYTPMIVAADFVRSAKARDSEFTTNQGDCPLIVQ 92
>gi|345327855|ref|XP_003431210.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine synthase 4-like
[Ornithorhynchus anatinus]
Length = 411
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/264 (37%), Positives = 145/264 (54%), Gaps = 14/264 (5%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+L +R L RRY LCYTPM+ A F+ K R + DRPLI+QF
Sbjct: 124 ICAPMVRYSKLAFRTLVRRYDCDLCYTPMIIAADFVRSVKARDSEFTTNQGDRPLIVQFA 183
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
D++ L +AA L P+ +GID+N GCPQ A YGA L ++ L+ ++V +R V+
Sbjct: 184 AKDAQLLADAATLVRPYANGIDVNCGCPQRWAMAEGYGACLINNPELVRDMVRQVRNQVE 243
Query: 272 ---VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
VS KIRI+ D+ +TV+ R E G + VHGRTV++R ++ I ++
Sbjct: 244 DVTFSVSIKIRIHDDLTRTVDLCRKAEATGVSWITVHGRTVEERHQPV---HYDAIKIIK 300
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
++L++PV+ NG+++ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 301 ESLSVPVVVNGDVKSLREAETVQRVTGTDGVMVARGLLANPAMFAGYEETPLKCIRDWVD 360
Query: 389 LVAQYPVRLQYARGHVFNMCHHLL 412
+ ++ G F HH L
Sbjct: 361 VSLEH--------GSPFTCFHHHL 376
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 34/58 (58%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
I APMV S+L +R L RRY LCYTPM+ A F+ K R + DRPLI+Q
Sbjct: 124 ICAPMVRYSKLAFRTLVRRYDCDLCYTPMIIAADFVRSVKARDSEFTTNQGDRPLIVQ 181
>gi|380024345|ref|XP_003695961.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Apis florea]
Length = 349
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 94/275 (34%), Positives = 149/275 (54%), Gaps = 7/275 (2%)
Query: 142 IFPRLGSPRFI--LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 199
I L PR I APMV S+L +R L R+Y +C+TPM+ A FI +K R +
Sbjct: 5 IIEMLKEPRMIKVCAPMVRYSKLQFRTLVRQYDCDICFTPMILADSFIQSEKARNNEFST 64
Query: 200 TPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 259
D+PLI+QF + + AA+L P+C G+D+N GCPQ A + YGA L +
Sbjct: 65 NNADKPLIVQFAAKNVYDFLNAAELVAPYCSGVDLNCGCPQRWALKEGYGADLLKKPDFV 124
Query: 260 TNLVSSLRQAVQVP--VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
+L+ +R + P VS KIR+ +D++KT+ + R+LE+AG L +H RT + R
Sbjct: 125 KDLIYQVRNRIPHPFTVSVKIRLLKDIHKTINFCRILEKAGASFLTIHARTPEMRCEPIN 184
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
L +++ +R ++ +P+IANG+++ L + E ++ VM+A G L NPALF+G +
Sbjct: 185 L---DNLKLIRDSVKLPLIANGDVKSLENAENLYRESNCDAVMSARGILTNPALFSGYSV 241
Query: 378 PAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLL 412
++LD+ + P H+ M +L
Sbjct: 242 TPLNCVQDWLDITSTIPTPFTCFHHHLVFMLEKIL 276
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 71 DAWTQLGSPRFI--LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM 128
D L PR I APMV S+L +R L R+Y +C+TPM+ A FI +K R
Sbjct: 4 DIIEMLKEPRMIKVCAPMVRYSKLQFRTLVRQYDCDICFTPMILADSFIQSEKARNNEFS 63
Query: 129 STPEDRPLIIQ---RTIFPRLGSPRFILAPMVDASEL----PWR-LLSRRYGSHLCYTP 179
+ D+PLI+Q + ++ L + + AP +L P R L YG+ L P
Sbjct: 64 TNNADKPLIVQFAAKNVYDFLNAAELV-APYCSGVDLNCGCPQRWALKEGYGADLLKKP 121
>gi|348568111|ref|XP_003469842.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Cavia porcellus]
Length = 317
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 98/268 (36%), Positives = 148/268 (55%), Gaps = 6/268 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYHCDLCYTPMIVAADFVRSIKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 90 ANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVRDMVKQVRNQVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +TV++ R E G + VHGRTV++R ++ I ++
Sbjct: 150 NPRFSVSIKIRIHDDLTRTVDFCRKAEATGVNWITVHGRTVEERHQPV---HYDAIKIIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IPVIANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 207 ENMSIPVIANGDIRSLKEAENVWQITGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVD 266
Query: 389 LVAQYPVRLQYARGHVFNMCHHLLTLPE 416
+ + H+ M + + E
Sbjct: 267 IALELGTPFMCFHQHLMYMMEKITSKQE 294
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYHCDLCYTPMIVAADFVRSIKARDSEFTTNQGDCPLIVQ 87
>gi|126340537|ref|XP_001363271.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Monodelphis
domestica]
Length = 317
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/298 (34%), Positives = 159/298 (53%), Gaps = 17/298 (5%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 ICAPMVRYSKLAFRTLVRKYNCDLCYTPMIVAADFVRSTKARDSEFTTNKGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 90 ANDAQLLSDAARIVCPYANGIDINCGCPQRWAITEGYGACLINKPELVQDMVKQVRSQVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +T++ R E G + VHGR +++R ++ I ++
Sbjct: 150 NPNFSVSIKIRIHDDLTRTIDLCRKAEATGVSWITVHGRNIEERHQP---VHYDAIKIIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ L+IP+IANG+I+ L + E TG G+M A G L NPA+F G + +++D
Sbjct: 207 ENLSIPIIANGDIKSLKEAENVQEMTGTNGIMVARGLLANPAMFAGYKETPLKCIWDWVD 266
Query: 389 LVAQYPVRLQYARGHVFNMC--HHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
+ ++ G F MC HHL+ + E + N + +D L + +
Sbjct: 267 IALEH--------GTPF-MCFHHHLMYMMERITSKQEKKMFNSLSSTTAVLDYLTDHY 315
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
I APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 ICAPMVRYSKLAFRTLVRKYNCDLCYTPMIVAADFVRSTKARDSEFTTNKGDCPLIVQ 87
>gi|328779117|ref|XP_623545.2| PREDICTED: tRNA-dihydrouridine synthase 4-like [Apis mellifera]
Length = 349
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 149/275 (54%), Gaps = 7/275 (2%)
Query: 142 IFPRLGSPRF--ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 199
I L PR + APMV S+L +R L R+Y +C+TPM+ A FI +K R +
Sbjct: 5 IIEMLKEPRMTKVCAPMVRYSKLQFRTLVRQYDCDICFTPMILADSFIQSEKARNNEFST 64
Query: 200 TPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 259
D+PLI+QF + + AA+L P+C G+D+N GCPQ A + YGA L +
Sbjct: 65 NNSDKPLIVQFAAKNVYDFLNAAELVAPYCSGVDLNCGCPQRWALKEGYGADLLKKPDFV 124
Query: 260 TNLVSSLRQAVQVP--VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
+L+ +R + P VS KIR+ +D++KT+ + R+LE+AG L +H RT + R
Sbjct: 125 KDLIYQVRNRIPHPFTVSVKIRLLKDIHKTINFCRILEKAGASFLTIHARTPEMRCEPIN 184
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
L +++ +R ++ +P+IANG+++ L + E ++ VM+A G L NPALF+G +
Sbjct: 185 L---DNLKLIRDSVKLPLIANGDVKSLENAENLYRESNCDAVMSARGILTNPALFSGYSV 241
Query: 378 PAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLL 412
++LD+ + P H+ M +L
Sbjct: 242 TPLNCVQDWLDITSTIPTPFTCFHHHLVFMLEKIL 276
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 71 DAWTQLGSPRF--ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM 128
D L PR + APMV S+L +R L R+Y +C+TPM+ A FI +K R
Sbjct: 4 DIIEMLKEPRMTKVCAPMVRYSKLQFRTLVRQYDCDICFTPMILADSFIQSEKARNNEFS 63
Query: 129 STPEDRPLIIQ---RTIFPRLGSPRFILAPMVDASEL----PWR-LLSRRYGSHLCYTP 179
+ D+PLI+Q + ++ L + + AP +L P R L YG+ L P
Sbjct: 64 TNNSDKPLIVQFAAKNVYDFLNAAELV-APYCSGVDLNCGCPQRWALKEGYGADLLKKP 121
>gi|410952046|ref|XP_003982699.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Felis catus]
Length = 317
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 96/244 (39%), Positives = 141/244 (57%), Gaps = 6/244 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L RRY LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRRYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + ++ ++V +R V+
Sbjct: 90 ANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPEVVRDMVKQVRNQVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +TV+ R E G + VHGRTV++R +E I ++
Sbjct: 150 NPRFSVSIKIRIHDDLTRTVDLCRKAEATGVSWITVHGRTVEERHQPV---HYEAIKIIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IPVIANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 207 ENMSIPVIANGDIRSLKEAENVWHITGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVD 266
Query: 389 LVAQ 392
+ +
Sbjct: 267 IALE 270
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L RRY LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 VCAPMVRYSKLAFRTLVRRYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQ 87
>gi|307166837|gb|EFN60767.1| tRNA-dihydrouridine synthase 4-like [Camponotus floridanus]
Length = 748
Score = 176 bits (445), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 97/272 (35%), Positives = 150/272 (55%), Gaps = 8/272 (2%)
Query: 142 IFPRLGSPRFI--LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 199
I L PR I APMV S+L +R L RRYG +C+TPM+ A F+ K R+ +
Sbjct: 5 IVAMLKEPRMIKICAPMVRYSKLQFRTLVRRYGCDICFTPMILADSFVRSLKARENEFTT 64
Query: 200 TPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 259
ED PLI+QF + AA++ P+C+G+D+N GCPQ A + YGA L L+
Sbjct: 65 HKEDNPLIVQFAAKTVNDFVGAAEMVAPYCNGVDLNCGCPQRWAIKEGYGADLLKKPELV 124
Query: 260 TNLVSSLRQAVQVP--VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
+L+ +R + P VS KIR+ +D+ +T+ ++LE+AG L VH RT + R
Sbjct: 125 KDLIYEIRNHIPRPFTVSVKIRLLKDIRQTIMLCQVLEKAGASFLTVHARTPEMRNEPID 184
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
L +++ +R + +P++ANG+++ L D E ++ GVM+A G L NPALF+G +
Sbjct: 185 L---DNLKLLRDHIQLPLVANGDVKNLEDAEFLFKESRCEGVMSARGILNNPALFSGHST 241
Query: 378 PAWELASEYLDLVAQYPVRLQYARGH-VFNMC 408
++L++ + P Q H VF +C
Sbjct: 242 TPLVCIQDWLNITSTIPTEFQCFHHHLVFILC 273
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 61/120 (50%), Gaps = 11/120 (9%)
Query: 70 SDAWTQLGSPRFI--LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL 127
+D L PR I APMV S+L +R L RRYG +C+TPM+ A F+ K R+
Sbjct: 3 TDIVAMLKEPRMIKICAPMVRYSKLQFRTLVRRYGCDICFTPMILADSFVRSLKARENEF 62
Query: 128 MSTPEDRPLIIQ---RTIFPRLGSPRFILAPMVDASEL----PWR-LLSRRYGSHLCYTP 179
+ ED PLI+Q +T+ +G+ + AP + +L P R + YG+ L P
Sbjct: 63 TTHKEDNPLIVQFAAKTVNDFVGAAEMV-APYCNGVDLNCGCPQRWAIKEGYGADLLKKP 121
>gi|351712773|gb|EHB15692.1| tRNA-dihydrouridine synthase 4-like protein [Heterocephalus glaber]
Length = 317
Score = 176 bits (445), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 141/241 (58%), Gaps = 6/241 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L RRY LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRRYCCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 90 ANDARILSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +TV++ R E G + VHGRTV++R ++ I ++
Sbjct: 150 NPRFSVSIKIRIHDDLTRTVDFCRKAEATGVNWITVHGRTVEERHQP---VHYDTIKIIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IPVIANG+I+ L + E T GVM A G L NPA+F G + + +++D
Sbjct: 207 ENMSIPVIANGDIRSLKEAEKMWQITRTDGVMVARGLLTNPAMFAGYEQTPLQCIRDWVD 266
Query: 389 L 389
+
Sbjct: 267 I 267
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L RRY LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 VCAPMVRYSKLAFRTLVRRYCCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQ 87
>gi|350423981|ref|XP_003493652.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Bombus impatiens]
Length = 349
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 148/271 (54%), Gaps = 7/271 (2%)
Query: 146 LGSPRFI--LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPED 203
L PR I APMV S+L +R L R+Y +C+TPM+ A F+ +K R + D
Sbjct: 9 LKEPRMIKVCAPMVRYSKLQFRTLVRQYDCDICFTPMILADSFVQSEKARDNEFSTNNGD 68
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
+PL++QF + + A +L P+C+G+D+N GCPQ A + YGA L L+ +L+
Sbjct: 69 KPLVVQFAAKNVYDFLNATELVAPYCNGVDLNCGCPQRWALKDGYGADLLKKPDLVKDLI 128
Query: 264 SSLRQAVQVP--VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+R + P VS KIR+ +D+ KT+++ R+LE+AG L +H RT + R L
Sbjct: 129 YQVRNRIPYPFTVSVKIRLLKDIQKTIDFCRILEKAGASFLTIHARTPEMRCEPIDLY-- 186
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWE 381
++ VR ++ +P+IANG+++ L E ++ VM+A G L NPALF+G +
Sbjct: 187 -NLKLVRDSVKLPLIANGDVKSLESAEKLYKESNCDAVMSARGILTNPALFSGHSITPLN 245
Query: 382 LASEYLDLVAQYPVRLQYARGHVFNMCHHLL 412
++LD+ + P + H+ M +L
Sbjct: 246 CVQDWLDITSTIPTQFICFHHHLVFMLEKML 276
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 11/119 (9%)
Query: 71 DAWTQLGSPRFI--LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM 128
D L PR I APMV S+L +R L R+Y +C+TPM+ A F+ +K R
Sbjct: 4 DIAEMLKEPRMIKVCAPMVRYSKLQFRTLVRQYDCDICFTPMILADSFVQSEKARDNEFS 63
Query: 129 STPEDRPLIIQ---RTIFPRLGSPRFILAPMVDASEL----PWR-LLSRRYGSHLCYTP 179
+ D+PL++Q + ++ L + + AP + +L P R L YG+ L P
Sbjct: 64 TNNGDKPLVVQFAAKNVYDFLNATELV-APYCNGVDLNCGCPQRWALKDGYGADLLKKP 121
>gi|219123999|ref|XP_002182301.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|219128682|ref|XP_002184536.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403986|gb|EEC43935.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406262|gb|EEC46202.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 229
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 104/229 (45%), Positives = 138/229 (60%), Gaps = 8/229 (3%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPMV ASEL +RLL R+YG+ + YTPM+SA +F D R + DRPL+ F
Sbjct: 1 ILAPMVGASELAFRLLCRKYGAQVAYTPMMSAPKFATDPSYRSAEFQTCAADRPLVCHFA 60
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD--DWPLLTNLVSSLRQA 269
ND+ + AA A+P CD ID+N+GCPQ A GH+G+YL D D L+ ++V + A
Sbjct: 61 ANDAADFAAAAIAAQPFCDAIDLNLGCPQRTAYLGHFGSYLLDRKDRSLICDIVRAGAAA 120
Query: 270 VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR-----TVDQRGMNTGLASWEHI 324
V +P+ KIR+ V +T+E + LERAG L+AVH R G G A + I
Sbjct: 121 VSIPIFVKIRLLDKVEETIELCQQLERAGASLIAVHARYRASWERKGAGARDGPALLDQI 180
Query: 325 TAVRKALT-IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
+++ +T IP+IANGN+ DVE L TG GVM+AEG L NPALF
Sbjct: 181 AVLKQHITSIPIIANGNVITYDDVEKNLELTGADGVMSAEGILDNPALF 229
Score = 62.4 bits (150), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 37/56 (66%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLI 137
ILAPMV ASEL +RLL R+YG+ + YTPM+SA +F D R + DRPL+
Sbjct: 1 ILAPMVGASELAFRLLCRKYGAQVAYTPMMSAPKFATDPSYRSAEFQTCAADRPLV 56
>gi|167526513|ref|XP_001747590.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774036|gb|EDQ87670.1| predicted protein [Monosiga brevicollis MX1]
Length = 1116
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 104/285 (36%), Positives = 153/285 (53%), Gaps = 19/285 (6%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAH-------------QFIADKK- 191
LG+PR + APMV SE +R L R +G+HL YTPM A + A+K+
Sbjct: 27 LGAPRHVCAPMVWNSEAAFRCLVRDHGAHLAYTPMWRAAIVCQYRDSPEWTPRTPAEKEA 86
Query: 192 --LRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 249
+ ++ + +DRPLI Q C ++ AA++ EP D ID+N+GCPQ AKR +G
Sbjct: 87 AGILYDVQCAPEQDRPLIAQLCATKVEDFVAAAQILEPFVDAIDLNLGCPQNTAKREGFG 146
Query: 250 AYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309
AYL DD P + ++ + R + P++ K+R++ + T Y +MLE AGC L+A+H R
Sbjct: 147 AYLMDDLPRVEAMLRAARAVLHKPITAKVRLFPTLTATRAYLQMLEAAGCSLIAIHARLR 206
Query: 310 DQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
QR + G + + R A+ IP++ NG ++ L E+ L TGVAGVM A L P
Sbjct: 207 GQRH-HQGQPDFAMVREARDAVDIPLLVNGGVRSLRQAESVLEYTGVAGVMVAGALLELP 265
Query: 370 ALFTGQTRPA-WELASEYLDLVAQY-PVRLQYARGHVFNMCHHLL 412
LF GQ A A YL +Y P ++Y R H+ + +L
Sbjct: 266 RLFAGQMDLARLADARLYLQYAERYPPPAIRYVRDHLMTLLKPVL 310
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 54/109 (49%), Gaps = 19/109 (17%)
Query: 73 WTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAH-------------QFIA 118
WT LG+PR + APMV SE +R L R +G+HL YTPM A + A
Sbjct: 23 WTDVLGAPRHVCAPMVWNSEAAFRCLVRDHGAHLAYTPMWRAAIVCQYRDSPEWTPRTPA 82
Query: 119 DKK---LRQEILMSTPEDRPLIIQ--RTIFPRLGSPRFILAPMVDASEL 162
+K+ + ++ + +DRPLI Q T + IL P VDA +L
Sbjct: 83 EKEAAGILYDVQCAPEQDRPLIAQLCATKVEDFVAAAQILEPFVDAIDL 131
>gi|301755675|ref|XP_002913683.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Ailuropoda
melanoleuca]
gi|281349138|gb|EFB24722.1| hypothetical protein PANDA_001508 [Ailuropoda melanoleuca]
Length = 317
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 97/244 (39%), Positives = 141/244 (57%), Gaps = 6/244 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSIKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 90 ANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVRDMVKQVRNQVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +TV+ R E G + VHGRTV++R +E I ++
Sbjct: 150 NPRFSVSIKIRIHDDLTRTVDLCRKAEATGVSWITVHGRTVEERHQPV---HYEAIKIIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ L+IPVIANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 207 ENLSIPVIANGDIRNLKEAENVWHITGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVD 266
Query: 389 LVAQ 392
+ +
Sbjct: 267 IALE 270
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSIKARDSEFTTNQGDCPLIVQ 87
>gi|118082094|ref|XP_001231915.1| PREDICTED: tRNA-dihydrouridine synthase 4-like isoform 1 [Gallus
gallus]
Length = 317
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 148/282 (52%), Gaps = 6/282 (2%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
R G I APMV S+L +R L RRYG LCYTPMV A F+ K R + D
Sbjct: 21 RAGHVVKICAPMVRYSKLAFRTLVRRYGCDLCYTPMVVAADFVRSAKARDSEFTTNRGDN 80
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PLI+QF +++ L +AA L P DG+D+N GCPQ A YGA L + L+ ++V
Sbjct: 81 PLIVQFAAKEAQVLCDAALLVCPFADGVDLNCGCPQRWAMAEGYGACLINKPELVRDMVR 140
Query: 265 SLRQAVQVP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+R + P VS KIRI++D+ KTV+ + E G + VHGR +++R +
Sbjct: 141 HVRNQIDNPRFSVSIKIRIHEDLKKTVDLCKKAEATGVSWITVHGRNIEERHQPV---HY 197
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWE 381
+ I +++++ IPV+ANG+I+ L D E TG GVM A G L NPA+F G +
Sbjct: 198 DAIKVIKESIHIPVVANGDIKTLKDAENVHHLTGADGVMVARGLLANPAMFAGYEETPLK 257
Query: 382 LASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+++D+ ++ H+ M + + E +L
Sbjct: 258 CIQDWVDIALEHGTPFTCFHHHLMYMMERITSKQEKKVFNIL 299
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
I APMV S+L +R L RRYG LCYTPMV A F+ K R + D PLI+Q
Sbjct: 28 ICAPMVRYSKLAFRTLVRRYGCDLCYTPMVVAADFVRSAKARDSEFTTNRGDNPLIVQFA 87
Query: 142 IFPR--LGSPRFILAPMVDASEL----PWR-LLSRRYGSHLCYTP 179
L ++ P D +L P R ++ YG+ L P
Sbjct: 88 AKEAQVLCDAALLVCPFADGVDLNCGCPQRWAMAEGYGACLINKP 132
>gi|72008833|ref|XP_786210.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Strongylocentrotus purpuratus]
Length = 351
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 148/282 (52%), Gaps = 6/282 (2%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
P + APMV S+L +R L R Y L +TPM+ F+ K R S DRPLI+
Sbjct: 18 PVKMCAPMVRYSKLAFRTLVRSYDCDLTFTPMIVCDSFVKSAKARDSEFTSNEGDRPLIV 77
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
QF +++K+L +AA+L + DG+D+N GCPQ A YGA L L+ ++V
Sbjct: 78 QFAASNAKDLADAAELVARYTDGVDLNCGCPQRWAVAEGYGACLIKHPDLIKDMVQQTWN 137
Query: 269 AV---QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
V S KIR+++D+ +TVE R E AG + VHGRT +QRG A + I
Sbjct: 138 RVDRSDFTTSIKIRLHKDIRETVELCRRAEHAGVSWITVHGRTKEQRGEP---ADHDAIR 194
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
+++ + +PV+ANG+++ + DV + QTGV GVM+A G L NPA++ G ++ +
Sbjct: 195 IIKEGVGVPVVANGDVKLMEDVRRIVEQTGVDGVMSARGILRNPAMYAGYDDTPFQCIQD 254
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT 427
++D+ L Y H+ M L E + L T
Sbjct: 255 WVDIGLSLGTNLTYFHHHLMQMLDQYLPGSEKVNFNSLTSTT 296
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 33/65 (50%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
Q P + APMV S+L +R L R Y L +TPM+ F+ K R S DR
Sbjct: 14 QSKEPVKMCAPMVRYSKLAFRTLVRSYDCDLTFTPMIVCDSFVKSAKARDSEFTSNEGDR 73
Query: 135 PLIIQ 139
PLI+Q
Sbjct: 74 PLIVQ 78
>gi|449278836|gb|EMC86575.1| tRNA-dihydrouridine synthase 4-like protein [Columba livia]
Length = 315
Score = 175 bits (443), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 146/269 (54%), Gaps = 6/269 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+L +R L R+Y LCYTPM+ A F+ K R + DRPLI+QF
Sbjct: 28 ICAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSAKARDSEFTTNKGDRPLIVQFA 87
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
+++ L +AA++ P DGID+N GCPQ A YGA L + L+ ++V +R +
Sbjct: 88 AKEAQVLCDAARIVCPFADGIDLNCGCPQRWAMSEGYGACLINKPELIRDMVRHVRNQID 147
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI++D+ +TV+ + E G + VHGR+V +R ++ I ++
Sbjct: 148 NPGFSVSIKIRIHEDLKRTVDLCQKAEATGVSWITVHGRSVQERHQPV---HYDAIKIIK 204
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
++++IPV+ANG+I+ L D E TG G+M A G L NPA+F G E +++D
Sbjct: 205 QSMSIPVVANGDIKTLKDAENVHHLTGADGIMVARGLLANPAMFAGYEETPLECIQDWVD 264
Query: 389 LVAQYPVRLQYARGHVFNMCHHLLTLPEN 417
+ ++ H+ M + + E
Sbjct: 265 IALEHGTPFTCFHHHLMYMMERITSKQEK 293
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
I APMV S+L +R L R+Y LCYTPM+ A F+ K R + DRPLI+Q
Sbjct: 28 ICAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSAKARDSEFTTNKGDRPLIVQFA 87
Query: 142 IFPR--LGSPRFILAPMVDASEL----PWR-LLSRRYGSHLCYTP 179
L I+ P D +L P R +S YG+ L P
Sbjct: 88 AKEAQVLCDAARIVCPFADGIDLNCGCPQRWAMSEGYGACLINKP 132
>gi|307208699|gb|EFN85989.1| tRNA-dihydrouridine synthase 4-like [Harpegnathos saltator]
Length = 351
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 144/263 (54%), Gaps = 5/263 (1%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+L +R L RRY +C+TPM+ A+ F+ K R+ + ED+PLI+QF
Sbjct: 17 ICAPMVRYSKLQFRTLVRRYACDICFTPMIMANSFVQSSKARENEFTTYKEDKPLIVQFA 76
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
N + A ++ P+ +G+D+N GCPQ A + YGA L L+++L+ +R +
Sbjct: 77 ANTVNDFISATEMIAPYSNGVDLNCGCPQRWAIKDGYGADLLRKPELVSDLIYQVRNRIP 136
Query: 272 VP--VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK 329
P VS KIR+ +D+ KT+ + LE+AG L +H RT + R L +++ +R
Sbjct: 137 KPFTVSVKIRLLKDICKTIMLCQTLEKAGASFLTIHARTPEMRNEPIEL---DNLKLLRD 193
Query: 330 ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDL 389
+ +P IANG+++ L E ++ GVM+A G L NPALF+G + ++LD+
Sbjct: 194 CVQLPFIANGDVKDLESAEVLFRESRCEGVMSARGILTNPALFSGHSTTPLICIQDWLDI 253
Query: 390 VAQYPVRLQYARGHVFNMCHHLL 412
+ P Q H+ M +L
Sbjct: 254 ASTIPTEFQCFHHHLVFMLEKVL 276
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 70 SDAWTQLGSPRF--ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL 127
+D L P+ I APMV S+L +R L RRY +C+TPM+ A+ F+ K R+
Sbjct: 3 TDIVAMLKEPQMTKICAPMVRYSKLQFRTLVRRYACDICFTPMIMANSFVQSSKARENEF 62
Query: 128 MSTPEDRPLIIQ 139
+ ED+PLI+Q
Sbjct: 63 TTYKEDKPLIVQ 74
>gi|291391307|ref|XP_002712160.1| PREDICTED: dihydrouridine synthase 4-like [Oryctolagus cuniculus]
Length = 317
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 141/241 (58%), Gaps = 6/241 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYNCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L+EAA++ P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 90 ANDARLLSEAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVRDMVKQVRNQVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI++D+ +TV+ + E G + +HGRTV++R ++ I ++
Sbjct: 150 NPRFSVSIKIRIHEDLRRTVDLCQKAEATGVSWITIHGRTVEERHQPV---HYDAIKIIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IPVIANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 207 ENISIPVIANGDIRSLKEAENVWQVTGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVD 266
Query: 389 L 389
+
Sbjct: 267 I 267
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYNCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQ 87
>gi|346473567|gb|AEO36628.1| hypothetical protein [Amblyomma maculatum]
Length = 358
Score = 174 bits (442), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 152/296 (51%), Gaps = 13/296 (4%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+ +R L RRY + YTPM+ + F+ +K R + DRPLI+QF
Sbjct: 53 ICAPMVRYSKQAFRHLVRRYNVDIAYTPMIVSDSFVKSRKARDAEFTTGQGDRPLIVQFA 112
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV- 270
N++ +L AA+L + DG+D+N GCPQ A YGA+L L+ ++V R +
Sbjct: 113 ANNAIDLANAAELVYRYADGVDLNCGCPQRWAMAEGYGAHLLAHPELVRDMVLQTRNRLS 172
Query: 271 --QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
S KIRI D+ KTV++ + LE G + VHGRT DQR + S E I V+
Sbjct: 173 DCSFTTSVKIRICSDLRKTVDFCQQLEATGVSFVTVHGRTKDQR---SEPVSIEAIRTVK 229
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+L IPV+ANG+I L+ E +TGV GVM A G L NPA+F+G ++L
Sbjct: 230 DSLQIPVVANGDITSLSKAEEICKETGVNGVMAARGMLDNPAMFSGSKHTPSVCVQDWLQ 289
Query: 389 LVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
L +Q L H+ M +L+ E R+ N + VD LR +
Sbjct: 290 LSSQLGCPLTQFHHHLMFMLDQVLSRSEK---RIF----NSLTSYSAIVDYLRATY 338
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
I APMV S+ +R L RRY + YTPM+ + F+ +K R + DRPLI+Q
Sbjct: 53 ICAPMVRYSKQAFRHLVRRYNVDIAYTPMIVSDSFVKSRKARDAEFTTGQGDRPLIVQ 110
>gi|323452795|gb|EGB08668.1| hypothetical protein AURANDRAFT_13024, partial [Aureococcus
anophagefferens]
Length = 224
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 99/233 (42%), Positives = 136/233 (58%), Gaps = 17/233 (7%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL---MSTP 201
RLGSPR LAP+VD SEL +RLL R YG+ +C+TPM+ A +F+AD R+ + P
Sbjct: 4 RLGSPRSALAPLVDQSELAYRLLCRSYGAGICWTPMMDATRFVADAAYRRAVFEAGAGAP 63
Query: 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTN 261
DRPL+ QF G+D + AA+L E D +++N GCPQ VAKRGH+GA+L D+ ++
Sbjct: 64 ADRPLVAQFAGDDPAAILAAARLVEHRVDVVELNCGCPQKVAKRGHFGAFLLDEPEVIVA 123
Query: 262 LVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT-GL-A 319
+V +L++ + VS TV AR LE AG LL VHGRT R M G
Sbjct: 124 VVRALKRGLACAVS---------AATVALARRLEAAGADLLTVHGRT---RAMKKCGFPC 171
Query: 320 SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
+ I AV++A+ +PV+ANG ++ AD TG VM+ E L +P F
Sbjct: 172 DFAAIAAVKRAVRVPVVANGGVERHADFARARELTGCDCVMSGELALAHPRAF 224
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 104/243 (42%), Gaps = 50/243 (20%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL---MS 129
W +LGSPR LAP+VD SEL +RLL R YG+ +C+TPM+ A +F+AD R+ +
Sbjct: 2 WRRLGSPRSALAPLVDQSELAYRLLCRSYGAGICWTPMMDATRFVADAAYRRAVFEAGAG 61
Query: 130 TPEDRPLIIQRTIFPRLGSPRFILAPM------VDASELPWRLLSRRYGSHLCYTPMVSA 183
P DRPL+ Q P ILA VD EL C P
Sbjct: 62 APADRPLVAQFAG----DDPAAILAAARLVEHRVDVVELN------------CGCP---- 101
Query: 184 HQFIADKKLRQEILMSTPEDRPLIIQ------FCGNDSKNLTEAAKLAEPHCDGIDINIG 237
Q +A + L+ PE +++ C + + A +L D + ++
Sbjct: 102 -QKVAKRGHFGAFLLDEPEVIVAVVRALKRGLACAVSAATVALARRLEAAGADLLTVH-- 158
Query: 238 CPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERA 297
G A + +P ++++++AV+VPV V + ++AR E
Sbjct: 159 --------GRTRAMKKCGFPCDFAAIAAVKRAVRVPVVAN----GGVERHADFARARELT 206
Query: 298 GCQ 300
GC
Sbjct: 207 GCD 209
>gi|402864531|ref|XP_003896514.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Papio anubis]
Length = 317
Score = 174 bits (441), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 140/244 (57%), Gaps = 6/244 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 90 ANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVRDMVKQVRNQVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +TV+ R E G + VHGRT ++R ++ I ++
Sbjct: 150 TPGFSVSIKIRIHDDLKRTVDLCRKAEATGVSWITVHGRTAEERHQPV---HYDSIKIIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IPVIANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 207 ENMSIPVIANGDIRSLKEAENVWQITGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVD 266
Query: 389 LVAQ 392
+ +
Sbjct: 267 IALE 270
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQ 87
>gi|388453742|ref|NP_001253555.1| dihydrouridine synthase 4-like [Macaca mulatta]
gi|355560906|gb|EHH17592.1| hypothetical protein EGK_14030 [Macaca mulatta]
gi|355747923|gb|EHH52420.1| hypothetical protein EGM_12857 [Macaca fascicularis]
gi|383410657|gb|AFH28542.1| tRNA-dihydrouridine synthase 4-like [Macaca mulatta]
Length = 317
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 140/244 (57%), Gaps = 6/244 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 90 ANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVRDMVKQVRNQVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +TV+ R E G + VHGRT ++R ++ I ++
Sbjct: 150 TPGFSVSIKIRIHDDLKRTVDLCRKAEATGVSWITVHGRTAEERHQPV---HYDSIKIIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IPVIANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 207 ENMSIPVIANGDIRSLKEAENVWQITGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVD 266
Query: 389 LVAQ 392
+ +
Sbjct: 267 IALE 270
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQ 87
>gi|426357501|ref|XP_004046076.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
isoform 1 [Gorilla gorilla gorilla]
gi|426357503|ref|XP_004046077.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
isoform 2 [Gorilla gorilla gorilla]
Length = 317
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 141/244 (57%), Gaps = 6/244 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ +K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSRKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 90 ANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +TV+ + E G + VHGRT ++R ++ I ++
Sbjct: 150 TPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEERHQPV---HYDSIKIIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IPVIANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 207 ENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVD 266
Query: 389 LVAQ 392
+ +
Sbjct: 267 IALE 270
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ +K R + D PLI+Q
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSRKARDSEFTTNQGDCPLIVQ 87
>gi|380799123|gb|AFE71437.1| tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like, partial
[Macaca mulatta]
Length = 299
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 140/244 (57%), Gaps = 6/244 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 12 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFA 71
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 72 ANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVRDMVKQVRNQVE 131
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +TV+ R E G + VHGRT ++R ++ I ++
Sbjct: 132 TPGFSVSIKIRIHDDLKRTVDLCRKAEATGVSWITVHGRTAEERHQPV---HYDSIKIIK 188
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IPVIANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 189 ENMSIPVIANGDIRSLKEAENVWQITGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVD 248
Query: 389 LVAQ 392
+ +
Sbjct: 249 IALE 252
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 12 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQ 69
>gi|224002192|ref|XP_002290768.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220974190|gb|EED92520.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 615
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/229 (41%), Positives = 138/229 (60%), Gaps = 8/229 (3%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPMV ASEL +RLL R+YG+ L YTPM+S+ QF+ + + + + RPL+ F
Sbjct: 94 ILAPMVGASELAFRLLCRKYGATLSYTPMMSSSQFVQEAASMKNTVADSNLYRPLVCHFS 153
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVSSLRQA 269
N ++ +AAKL E +CD ID+N+GCPQ A GH+G+YL Q D L+ ++V + +A
Sbjct: 154 ANQPQDFAKAAKLVEKYCDAIDLNLGCPQRTAFIGHFGSYLLGQKDRKLVLSIVRAGSKA 213
Query: 270 VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR---TVDQR--GMNTGLASWEHI 324
V +P+ KIR+ V +T + L AG L+A+H R T ++ G G A + +
Sbjct: 214 VSIPIFVKIRLLDTVEETTKLCHELRDAGASLIAIHARYRATWERTGPGARDGPALLDQV 273
Query: 325 TAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
V++++ P+IANGN+ DV + TG G+M+AEG L NPALF
Sbjct: 274 AVVKQSMPDFPIIANGNVITYDDVISNKQSTGADGIMSAEGILDNPALF 322
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLI 137
ILAPMV ASEL +RLL R+YG+ L YTPM+S+ QF+ + + + + RPL+
Sbjct: 94 ILAPMVGASELAFRLLCRKYGATLSYTPMMSSSQFVQEAASMKNTVADSNLYRPLV 149
>gi|327273572|ref|XP_003221554.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Anolis
carolinensis]
Length = 325
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/298 (34%), Positives = 159/298 (53%), Gaps = 17/298 (5%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+L +R L R+Y LCYTPM+ A F+ +K R + DRPLI+QF
Sbjct: 37 ICAPMVRYSKLSFRTLVRKYNCDLCYTPMIVAADFVRSEKARHSEFTTNQGDRPLIVQFA 96
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
+++ L +AA + P DGID+N GCPQ A YGA L + L+ ++V ++ V+
Sbjct: 97 AKEAQVLADAACIVSPFADGIDLNCGCPQRWAMAEGYGACLINKPELVQDMVKLVKNQVE 156
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +T++ + E AG + VHGR V++R + I ++
Sbjct: 157 NPLFSVSIKIRIHDDLKRTIDLCQKAEAAGVSWITVHGRNVEERHQPV---HCDAIKIIK 213
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
++++IPV+ANG+++ L DVE TG GVM A G L NPA+F G E +++
Sbjct: 214 ESVSIPVVANGDMKSLKDVEDVHQITGTDGVMVARGLLANPAMFAGYEETPLECVQDWVH 273
Query: 389 LVAQYPVRLQYARGHVFNMC--HHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
+ ++ G F MC HHL+ + E + N + +D LR+ +
Sbjct: 274 IALEH--------GTPF-MCFHHHLMYMLERITSKQEKKIFNVLSSTSAVLDYLRDNY 322
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
I APMV S+L +R L R+Y LCYTPM+ A F+ +K R + DRPLI+Q
Sbjct: 37 ICAPMVRYSKLSFRTLVRKYNCDLCYTPMIVAADFVRSEKARHSEFTTNQGDRPLIVQFA 96
Query: 142 IFPR--LGSPRFILAPMVDASEL----PWR-LLSRRYGSHLCYTP 179
L I++P D +L P R ++ YG+ L P
Sbjct: 97 AKEAQVLADAACIVSPFADGIDLNCGCPQRWAMAEGYGACLINKP 141
>gi|260943748|ref|XP_002616172.1| hypothetical protein CLUG_03413 [Clavispora lusitaniae ATCC 42720]
gi|238849821|gb|EEQ39285.1| hypothetical protein CLUG_03413 [Clavispora lusitaniae ATCC 42720]
Length = 367
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 160/306 (52%), Gaps = 10/306 (3%)
Query: 147 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 206
G P +I PMV S+LP+R L R Y + L Y+PM+ A +F+ + R + D PL
Sbjct: 41 GRPAYIAGPMVRYSKLPFRELVRLYNTDLVYSPMILAREFVRNGTARATDFSTNSRDSPL 100
Query: 207 IIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSL 266
++Q +++++L L H D I +N GCP R GA L + ++V ++
Sbjct: 101 VVQVGASNAQDLVRFVDLIHEHVDAIGLNCGCPIRDQVREGIGAALMSQPENVASMVRAV 160
Query: 267 RQ--AVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
++ +V V KIRI+ D+ +T+ + +++E AG + VHGRT R ++ A+W I
Sbjct: 161 KEKYGARVLVETKIRIHPDLQETLRWVKLVEEAGVDWITVHGRTRTTR--SSQPANWAAI 218
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELAS 384
V+KA ++PV+ANG+ L D +TG GVM G L NPALF+G+ RP W
Sbjct: 219 AEVKKAASVPVVANGDCFSLEDARRMARETGCDGVMAVRGILANPALFSGRARPPWGAVE 278
Query: 385 EYLDLVAQYPVRLQYARGHVFNMCHHLLT---LPENSDVRLLVGKTNHIKDLRKAVDMLR 441
+ DL A Y + + A+ H+ M L++ L E D+ V + ++ + D+ R
Sbjct: 279 HFFDLAASYGLPFRVAQHHLAQMMEQLVSRRYLREFGDISCWV---DMVEWFDQRFDLKR 335
Query: 442 ERFIDY 447
+D+
Sbjct: 336 RGDVDF 341
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 77 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 136
G P +I PMV S+LP+R L R Y + L Y+PM+ A +F+ + R + D PL
Sbjct: 41 GRPAYIAGPMVRYSKLPFRELVRLYNTDLVYSPMILAREFVRNGTARATDFSTNSRDSPL 100
Query: 137 IIQ 139
++Q
Sbjct: 101 VVQ 103
>gi|332237993|ref|XP_003268188.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
isoform 1 [Nomascus leucogenys]
Length = 317
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 140/244 (57%), Gaps = 6/244 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVKSIKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 90 ANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVRDMVKQVRNQVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +TV+ R E G + VHGRT ++R ++ I ++
Sbjct: 150 TPGFSVSIKIRIHDDLKRTVDLCRKAEATGVSWITVHGRTAEERHQPV---HYDSIKIIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IPVIANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 207 ENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVD 266
Query: 389 LVAQ 392
+ +
Sbjct: 267 IALE 270
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVKSIKARDSEFTTNQGDCPLIVQ 87
>gi|351708848|gb|EHB11767.1| tRNA-dihydrouridine synthase 4-like protein [Heterocephalus glaber]
Length = 317
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/241 (39%), Positives = 140/241 (58%), Gaps = 6/241 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L RRY LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRRYSCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA + P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 90 ANDARLLSDAACIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P +S KIRI+ D+ +TV++ R E G + VHGRTV++R ++ I ++
Sbjct: 150 NPRFSISIKIRIHDDLTRTVDFCRKAEATGVNWITVHGRTVEERHQPV---HYDAIKIIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IPVIANG+I+ L + E T GVM A G L NPA+F G + + +++D
Sbjct: 207 ENMSIPVIANGDIRSLKEAENMWQITRTDGVMVARGLLANPAMFAGYEQTPLQCVQDWVD 266
Query: 389 L 389
+
Sbjct: 267 I 267
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L RRY LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 VCAPMVRYSKLAFRTLVRRYSCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQ 87
>gi|123469809|ref|XP_001318114.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121900865|gb|EAY05891.1| hypothetical protein TVAG_353310 [Trichomonas vaginalis G3]
Length = 321
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 109/308 (35%), Positives = 159/308 (51%), Gaps = 14/308 (4%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 199
+ + LG LAPMV+ ++ +R+L R+G +C+T M++ Q+ K RQ+ +
Sbjct: 4 KEFWKSLGEYPVCLAPMVEMGDIAFRILCHRHGCDVCWTGMINGSQWNRSKTYRQQQIEY 63
Query: 200 TPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL- 258
+ EDRPL+IQ G+ +L AK IDIN+GC Q VAKRG YG ++ D
Sbjct: 64 SEEDRPLVIQISGSIDVDLLTTAKSMSEFGVPIDINLGCCQKVAKRGEYGYFMVDSEQKR 123
Query: 259 --LTNLVSSLRQAVQVPVSCKIRIYQDVNK------TVEYARMLERAGCQLLAVHGRTVD 310
+ NL+ S+ + VP+ KIR D + TV++A+ LE AG L+ +HGR+
Sbjct: 124 QNVVNLIKSIPSEITVPLYVKIRALTDESGIPSIPITVDFAKHLEEAGASLITIHGRSAA 183
Query: 311 QRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
Q G + E + AV +A++IPVI NG I L D + +TG M+A+ L +P
Sbjct: 184 QD--KHGPLNKELVKAVVQAVSIPVIVNGGINSLDDARNMIRETGAIAAMSAQSLLMDPT 241
Query: 371 LFTGQTR-PAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNH 429
LF R P A EYLD+ +Y V AR H F L L N R +G+ +
Sbjct: 242 LFDKNGRQPNTVFALEYLDIFEKYHVPFDVARRHFFYFFDKELGL--NGQKRAALGRISD 299
Query: 430 IKDLRKAV 437
I+ LR V
Sbjct: 300 IQGLRDFV 307
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 132
W LG LAPMV+ ++ +R+L R+G +C+T M++ Q+ K RQ+ + + E
Sbjct: 7 WKSLGEYPVCLAPMVEMGDIAFRILCHRHGCDVCWTGMINGSQWNRSKTYRQQQIEYSEE 66
Query: 133 DRPLIIQ 139
DRPL+IQ
Sbjct: 67 DRPLVIQ 73
>gi|383848070|ref|XP_003699675.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Megachile rotundata]
Length = 349
Score = 174 bits (440), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/343 (30%), Positives = 173/343 (50%), Gaps = 22/343 (6%)
Query: 142 IFPRLGSPRFIL--APMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 199
I L P+ I APMV S+L +R L R+Y +C+TPM+ A F+ +K R +
Sbjct: 5 IVEMLKEPKMITVCAPMVRYSKLQFRSLVRQYNCDICFTPMILADSFVQSEKARDNEFST 64
Query: 200 TPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 259
ED+P+I+QF + + A ++ P+C+G+D+N GCPQ A + YGA L L+
Sbjct: 65 NNEDKPVIVQFAAKNVYDFLNATEMVAPYCNGVDLNCGCPQRWALKEGYGADLLRKPDLV 124
Query: 260 TNLVSSLRQAVQVP--VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
+LV ++ + P VS KIR+ +D+ KT+E ++LE+AG L VH RT + R
Sbjct: 125 KDLVYQVKNRIPNPFTVSVKIRLLKDIRKTIELCQVLEKAGASFLTVHARTPEMRNEPIN 184
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
L S + V+ + +P+IANG+++ L E ++ VM A G L NPALF+G +
Sbjct: 185 LDS---LRLVKDCVKLPIIANGDVKNLQTAEKLYMESNCEAVMAARGILTNPALFSGHSV 241
Query: 378 PAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAV 437
+ ++LD+ + P + H+ M L LP+ S + N++++ +
Sbjct: 242 TPLDCIQDWLDITSVIPTQFLCFHHHLVFMLEKL--LPKKSRIFF-----NNLQNKTAVL 294
Query: 438 DMLRERF-IDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYV 479
+ L + I + KL+ P N +P C ++
Sbjct: 295 EFLENTYGIKPNNNSKLFEPI-------KCNFKVPNMKCNKFI 330
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 71 DAWTQLGSPRFIL--APMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM 128
D L P+ I APMV S+L +R L R+Y +C+TPM+ A F+ +K R
Sbjct: 4 DIVEMLKEPKMITVCAPMVRYSKLQFRSLVRQYNCDICFTPMILADSFVQSEKARDNEFS 63
Query: 129 STPEDRPLIIQ---RTIFPRLGSPRFILAPMVDASEL----PWR-LLSRRYGSHLCYTP 179
+ ED+P+I+Q + ++ L + + AP + +L P R L YG+ L P
Sbjct: 64 TNNEDKPVIVQFAAKNVYDFLNATEMV-APYCNGVDLNCGCPQRWALKEGYGADLLRKP 121
>gi|320583735|gb|EFW97948.1| dihydrouridine synthase [Ogataea parapolymorpha DL-1]
Length = 338
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 150/276 (54%), Gaps = 9/276 (3%)
Query: 127 LMSTPEDRPL-IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQ 185
+ PED PL +I+R R P F+ PMV S+LP+R L R Y + Y+PM+ A +
Sbjct: 1 MARNPEDSPLAVIERC--RRENRPVFVAGPMVRYSKLPFRELVRDYKVDIVYSPMILARE 58
Query: 186 FIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKR 245
F+ + R + DRPLI+Q N+ +L + P+ DG+ +N GCP R
Sbjct: 59 FVRNHNARASDFSTNHRDRPLIVQIGANNVTDLLRMIDMIHPYVDGVGLNCGCPIKDQVR 118
Query: 246 GHYGAYLQDDWPLLTNLVSSLRQ--AVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLA 303
GA L L+ +V ++++ ++ + KIR++ D+ +T+E+ +M+E AG +
Sbjct: 119 EGIGAALMSKKELVAEMVHAVKEKYGSKLVIETKIRVHHDIQETIEFVKMVEAAGVDFIT 178
Query: 304 VHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363
VHGRT + R ++ ++E I A+++A+++PVIANG+ + L D TG GVM A
Sbjct: 179 VHGRTKNTR--SSEPCNFEKIKAIKEAVSVPVIANGDCRSLEDAFRIAKDTGCDGVMAAR 236
Query: 364 GNLYNPALFTGQTRPAWELASEYLDLVAQY--PVRL 397
G L NPA+F G + W ++ +L Y P RL
Sbjct: 237 GILNNPAMFAGYEKAPWGAIEKFWNLSTAYGLPFRL 272
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P F+ PMV S+LP+R L R Y + Y+PM+ A +F+ + R + DRPLI+
Sbjct: 22 PVFVAGPMVRYSKLPFRELVRDYKVDIVYSPMILAREFVRNHNARASDFSTNHRDRPLIV 81
Query: 139 Q 139
Q
Sbjct: 82 Q 82
>gi|50554003|ref|XP_504410.1| YALI0E26059p [Yarrowia lipolytica]
gi|49650279|emb|CAG80011.1| YALI0E26059p [Yarrowia lipolytica CLIB122]
Length = 359
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 170/327 (51%), Gaps = 14/327 (4%)
Query: 120 KKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTP 179
K+L + M+ R + +R G + PMV S+LP+R L R + + Y+P
Sbjct: 18 KQLHNFVAMTENRIRQVFRER---KEQGKTVTVAGPMVRYSKLPFRALVRHFDCDVVYSP 74
Query: 180 MVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCP 239
M+ A +F ++ R + +D PLI+Q GN+++++ +A K+ +P+ DG+ IN GCP
Sbjct: 75 MMLAREFCRNQTARLCDFTTNKDDFPLIVQLGGNNAEDMVKAVKMLQPYVDGVGINCGCP 134
Query: 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQ--AVQVPVSCKIRIYQDVNKTVEYARMLERA 297
R GA L L+ +V+++R+ ++ V K+RI++D+N TV +A+++E A
Sbjct: 135 IKEQIREGVGAALMTAPDLVAEMVAAIRKECGAEIYVEVKMRIHKDLNDTVHFAKLVEAA 194
Query: 298 GCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVA 357
G ++VHGR V QR +++ I V+ ++ +PVIANG+ ++E + TG
Sbjct: 195 GADSISVHGRLVPQRSRTA--PNYDGIKIVKDSVDVPVIANGDAFTTTNIEEIVELTGCD 252
Query: 358 GVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPEN 417
GVM A G L NPA+F G T+ W + D V Y + H M LT E
Sbjct: 253 GVMAARGILSNPAMFAGYTKTPWRAVELFWDYVTAYGLPYALTIHHFSEMLEAELTRYEK 312
Query: 418 SDVRLLVGKTNHIKDLRKAVDMLRERF 444
D+ N+ K++ + ++ +RF
Sbjct: 313 KDL-------NNCKNMVELINWFDDRF 332
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 77 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 136
G + PMV S+LP+R L R + + Y+PM+ A +F ++ R + +D PL
Sbjct: 42 GKTVTVAGPMVRYSKLPFRALVRHFDCDVVYSPMMLAREFCRNQTARLCDFTTNKDDFPL 101
Query: 137 IIQ 139
I+Q
Sbjct: 102 IVQ 104
>gi|354498109|ref|XP_003511158.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Cricetulus griseus]
Length = 317
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 148/269 (55%), Gaps = 6/269 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 ICAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSIKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 90 ANDARILSDAAQIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +T++ + E G + VHGRT+++R +E I ++
Sbjct: 150 NPRFSVSIKIRIHDDLTRTIDLCQKAEATGVSWITVHGRTIEERHQPV---HYEAIKIIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
++++IPV+ANG+I+ L + E +G GVM A G L NPA+F G + +++D
Sbjct: 207 ESVSIPVVANGDIRNLKEAENVWQMSGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVD 266
Query: 389 LVAQYPVRLQYARGHVFNMCHHLLTLPEN 417
+ + H+ M + + E
Sbjct: 267 IALELGTPFMCFHQHLMYMMEKITSRQEK 295
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 35/65 (53%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
Q G I APMV S+L +R L R+Y LCYTPM+ A F+ K R + D
Sbjct: 23 QSGQMVKICAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSIKARDSEFTTNQGDC 82
Query: 135 PLIIQ 139
PLI+Q
Sbjct: 83 PLIVQ 87
>gi|195997917|ref|XP_002108827.1| hypothetical protein TRIADDRAFT_52208 [Trichoplax adhaerens]
gi|190589603|gb|EDV29625.1| hypothetical protein TRIADDRAFT_52208 [Trichoplax adhaerens]
Length = 309
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 135/230 (58%), Gaps = 6/230 (2%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
++ APMV S+LP+R L R+YG + +TPM+ + FI +K R + DRPLI+QF
Sbjct: 18 YMSAPMVRYSKLPFRSLVRKYGCDVAFTPMIISESFIKSEKARASEFTTVASDRPLIVQF 77
Query: 211 CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
+++ +L +A +L P+ DG+D+N GCPQ A YGA+L + L+ +V R +
Sbjct: 78 AASNAFDLADATELIVPYADGVDLNCGCPQRWAMHEGYGAHLINHPELVKEMVRHTRSKI 137
Query: 271 ---QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
+S KIRI+ D+N TV+ R E AG + VHGRT ++ ++ I +
Sbjct: 138 CNENFSISIKIRIHNDINTTVDLCRKAEAAGVSWITVHGRTTSEKHTP---VHYDAIKTI 194
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
+ +++IPVIANGN+ + D + +T V GVM+A G L NPAL+ G ++
Sbjct: 195 KDSVSIPVIANGNVFTVDDAQEIYDKTNVDGVMSARGILRNPALYAGYSK 244
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 9/107 (8%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ- 139
++ APMV S+LP+R L R+YG + +TPM+ + FI +K R + DRPLI+Q
Sbjct: 18 YMSAPMVRYSKLPFRSLVRKYGCDVAFTPMIISESFIKSEKARASEFTTVASDRPLIVQF 77
Query: 140 --RTIFPRLGSPRFILAPMVDASEL----PWR-LLSRRYGSHLCYTP 179
F L ++ P D +L P R + YG+HL P
Sbjct: 78 AASNAFD-LADATELIVPYADGVDLNCGCPQRWAMHEGYGAHLINHP 123
>gi|354544705|emb|CCE41431.1| hypothetical protein CPAR2_304200 [Candida parapsilosis]
Length = 344
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/318 (31%), Positives = 171/318 (53%), Gaps = 14/318 (4%)
Query: 131 PEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK 190
P +RP I + + P +I PMV S+LP+R L R Y + YTPM+ A +F+ +
Sbjct: 10 PSNRPTSIIKKCQDQ-NRPAYIAGPMVRYSKLPFRELCRFYNVDIVYTPMILAREFVRND 68
Query: 191 KLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGA 250
R + +D+P+I+Q ++ ++ + ++ P+ DGI IN GCP R GA
Sbjct: 69 IARYSDFTTNDKDQPVIVQVGVSNVEDFMKFIEMIHPYVDGIGINCGCPIRDQIREGIGA 128
Query: 251 YLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308
L L+++L+++ + + + KIRI+ D+N+T+EY +++E AG ++ +HGRT
Sbjct: 129 ALMSKPRLVSDLIATAKAKYGDSICIDTKIRIHNDINETIEYVKLIEEAGTDIITIHGRT 188
Query: 309 VDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367
R ++ + + I +R+ + T+PVIANG+ L D + TGV GVM+A G L
Sbjct: 189 KTTR--SSVPVNLDAIKTIRRHIKTVPVIANGDCFTLDDCNSIAEYTGVDGVMSARGVLA 246
Query: 368 NPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDV-RLLVGK 426
NPALFTG + W ++ L Y + + ++ +H++ EN D+ R ++ +
Sbjct: 247 NPALFTGLNKTPWGAVEMFMHLTTSYGLPYKLSQ-------YHVVQFMENMDIPRRIIKE 299
Query: 427 TNHIKDLRKAVDMLRERF 444
N K + +D+L + F
Sbjct: 300 INECKSMIDMIDLLDKYF 317
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P +I PMV S+LP+R L R Y + YTPM+ A +F+ + R + +D+P+I+
Sbjct: 27 PAYIAGPMVRYSKLPFRELCRFYNVDIVYTPMILAREFVRNDIARYSDFTTNDKDQPVIV 86
Query: 139 QRTIFPRLGSPRFI--LAPMVDA 159
Q + +FI + P VD
Sbjct: 87 QVGVSNVEDFMKFIEMIHPYVDG 109
>gi|209447024|ref|NP_001129275.1| tRNA-dihydrouridine synthase 4-like [Rattus norvegicus]
gi|149051085|gb|EDM03258.1| dihydrouridine synthase 4-like (S. cerevisiae) (predicted) [Rattus
norvegicus]
Length = 321
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 146/269 (54%), Gaps = 6/269 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA + P+ GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 90 ANDARLLSDAALIVCPYASGIDINCGCPQRWAMADGYGACLINKPELVLDMVRQVRNRVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +T++ R +E G + VHGRTV++R ++ I ++
Sbjct: 150 NPRFSVSIKIRIHDDLARTIDLCRKVEATGVSWITVHGRTVEERHQPV---HYDAIKMIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IP++ANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 207 ENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAGYEETPLKCVWDWVD 266
Query: 389 LVAQYPVRLQYARGHVFNMCHHLLTLPEN 417
+ + H+ M + + E
Sbjct: 267 IALELGTPFMCFHQHLMYMMEKITSRQEK 295
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQ 87
>gi|344257920|gb|EGW14024.1| tRNA-dihydrouridine synthase 4-like [Cricetulus griseus]
Length = 299
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 148/268 (55%), Gaps = 6/268 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 12 ICAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSIKARDSEFTTNQGDCPLIVQFA 71
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 72 ANDARILSDAAQIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQVE 131
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +T++ + E G + VHGRT+++R +E I ++
Sbjct: 132 NPRFSVSIKIRIHDDLTRTIDLCQKAEATGVSWITVHGRTIEERHQPV---HYEAIKIIK 188
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
++++IPV+ANG+I+ L + E +G GVM A G L NPA+F G + +++D
Sbjct: 189 ESVSIPVVANGDIRNLKEAENVWQMSGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVD 248
Query: 389 LVAQYPVRLQYARGHVFNMCHHLLTLPE 416
+ + H+ M + + E
Sbjct: 249 IALELGTPFMCFHQHLMYMMEKITSRQE 276
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 35/65 (53%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
Q G I APMV S+L +R L R+Y LCYTPM+ A F+ K R + D
Sbjct: 5 QSGQMVKICAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSIKARDSEFTTNQGDC 64
Query: 135 PLIIQ 139
PLI+Q
Sbjct: 65 PLIVQ 69
>gi|299742242|ref|XP_001832336.2| t-diRNAhydrouridine synthase [Coprinopsis cinerea okayama7#130]
gi|298405094|gb|EAU89497.2| t-diRNAhydrouridine synthase [Coprinopsis cinerea okayama7#130]
Length = 349
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 107/327 (32%), Positives = 165/327 (50%), Gaps = 35/327 (10%)
Query: 156 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK-----LRQEILMSTPEDRPLIIQF 210
MV+ S+LP+RLL +YG+ YT M+ + + D++ LR + + RP+++Q
Sbjct: 1 MVNQSDLPFRLLVEQYGATSTYTQMLLPEKLLNDQEYLEFHLRDLQTFAKLKTRPVVVQL 60
Query: 211 CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVSSLRQ 268
GND + +A + + CDGID+N+GCPQ A+ HYGAYL Q DWPL+ +VSS+
Sbjct: 61 GGNDPDLVVQAGRKMQQWCDGIDLNLGCPQEAARDAHYGAYLLGQRDWPLVEQIVSSMAT 120
Query: 269 AVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+ VP S KIR+ Q V KT E+++ LE G + +H RTV R G A + ++
Sbjct: 121 SFTVPCSAKIRLCQPVGKTSEFSQRLEAQGASWITLHARTVSARRRRQGAADLSIVQELK 180
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP------------------- 369
+L +PVI+NGN++ D++ L TG G+M E L NP
Sbjct: 181 SSLRVPVISNGNVRAFPDLQVNLDYTGADGLMVGEALLDNPWYESRPTTCLLGDSTRESI 240
Query: 370 ---ALFTGQTRPAWELASEYLDLVAQYP--VRLQYARGHVFNMCH-HLLTLPENSDVRLL 423
LF+ +++ +YL L +Q+P L+ + HV + P S R
Sbjct: 241 PQDTLFSDIVPDPMQISLDYLKLCSQFPGTAPLRTVQAHVRHFVEAQCDREPWVSQFRAA 300
Query: 424 VGKTNHIKDLRKAVDMLRERFIDYHEG 450
+ T KD+ + ++R R D EG
Sbjct: 301 LSMT---KDISEVEGLVRSRIADREEG 324
>gi|384483549|gb|EIE75729.1| hypothetical protein RO3G_00433 [Rhizopus delemar RA 99-880]
Length = 288
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 98/262 (37%), Positives = 149/262 (56%), Gaps = 9/262 (3%)
Query: 156 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDS 215
MV S+LP+R L R+Y + + YTPM+ A F + R + D P+++QF N +
Sbjct: 1 MVRYSKLPFRELVRKYNTDIVYTPMILADVFKCSEFARHSDYSTNDNDDPVVVQFAANKA 60
Query: 216 KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVS 275
+L +AA+L P GIDIN GCPQ A + GAYL +D + +++ +++ V +P S
Sbjct: 61 ADLADAAELVAPFAGGIDINCGCPQKWAYQERIGAYLMEDPENVRDMIRTVKGRVNIPCS 120
Query: 276 CKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPV 335
KIR+++D+ T E+ + E G L VHGRT Q+ +T ++E I V++++++PV
Sbjct: 121 IKIRVHKDLKTTYEFVKRAESVGVDFLTVHGRTRLQK--STEPVNFEGIKLVKESVSMPV 178
Query: 336 IANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPV 395
IANG+I L D + +TGV GVM+A G L NPALF G WE EY+ L +Y
Sbjct: 179 IANGSIFSLKDADEMYEKTGVDGVMSARGLLQNPALFAGYESTPWECIEEYVRLALEYGT 238
Query: 396 RLQYARGHVFNMCHHLLTLPEN 417
+ F HHL+ + E+
Sbjct: 239 -------NSFIFHHHLMYMFED 253
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 86 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
MV S+LP+R L R+Y + + YTPM+ A F + R + D P+++Q
Sbjct: 1 MVRYSKLPFRELVRKYNTDIVYTPMILADVFKCSEFARHSDYSTNDNDDPVVVQ 54
>gi|241955235|ref|XP_002420338.1| tRNA-dihydrouridine synthase, putative [Candida dubliniensis CD36]
gi|223643680|emb|CAX41413.1| tRNA-dihydrouridine synthase, putative [Candida dubliniensis CD36]
Length = 340
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 170/329 (51%), Gaps = 13/329 (3%)
Query: 127 LMSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQF 186
L+ P+ RP + + + G P +I PMV S+LP+R L R Y + YTPM+ A +F
Sbjct: 5 LLRDPKYRPTEVIKQCQEK-GRPAYIAGPMVRYSKLPFRELCRFYDVDIVYTPMILAREF 63
Query: 187 IADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRG 246
+ ++ R + D+ +I+Q N+ ++ + ++ P DGI IN GCP R
Sbjct: 64 VRNEVARSTDFTTNDSDKCVIVQVGVNNVEDFMKFIEMIHPFVDGIGINCGCPIKEQVRE 123
Query: 247 HYGAYLQDDWPLLTNLVSSL--RQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
GA L D L+ L+ + + + + KIRI++D+N+T+++ + AG +L V
Sbjct: 124 GIGAALMSDPDLVAELIKTAKCKYGDSICIDTKIRIHRDINQTIDFVNKVVEAGTDMLTV 183
Query: 305 HGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363
HGRT + R ++ + + I +R + +IPVIANG+ L D + +A TGV GVM+A
Sbjct: 184 HGRTKNTR--SSVPVNLDAIKIIRDNVSSIPVIANGDCFTLTDFQKIVAYTGVDGVMSAR 241
Query: 364 GNLYNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
G L NPALFTG + W +L LV Y + + A+ +HL L E+ R
Sbjct: 242 GVLANPALFTGLNKTPWSAVEMFLHLVTAYGLPYKLAQ-------YHLAKLVEDVIPRKY 294
Query: 424 VGKTNHIKDLRKAVDMLRERFIDYHEGRK 452
V N +++ +D L E F +G K
Sbjct: 295 VKAINEKRNMVDIIDYLDEHFDLKRKGDK 323
Score = 52.0 bits (123), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 77 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 136
G P +I PMV S+LP+R L R Y + YTPM+ A +F+ ++ R + D+ +
Sbjct: 24 GRPAYIAGPMVRYSKLPFRELCRFYDVDIVYTPMILAREFVRNEVARSTDFTTNDSDKCV 83
Query: 137 IIQRTIFPRLGSPRFI--LAPMVDA 159
I+Q + +FI + P VD
Sbjct: 84 IVQVGVNNVEDFMKFIEMIHPFVDG 108
>gi|449544653|gb|EMD35626.1| hypothetical protein CERSUDRAFT_85566 [Ceriporiopsis subvermispora
B]
Length = 311
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 129/212 (60%), Gaps = 4/212 (1%)
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLT 260
DRP+++Q CGNDS+ + EA K + +CD ID+N+GCPQ A+ HYGAYL Q DWPL+
Sbjct: 26 DRPVVVQLCGNDSEMVVEAGKKVQGYCDAIDLNLGCPQEAARDAHYGAYLLGQKDWPLVE 85
Query: 261 NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320
N+VS++ ++ VPV KIR+ Q ++ T+++A+ LE AG + +H RTV R G A
Sbjct: 86 NMVSAMSRSFVVPVCTKIRLCQPISATLDFAQRLEAAGSAWVTLHARTVSARRRRQGAAD 145
Query: 321 WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW 380
+ + ++ L IPVI+NGN++ DVE A T G+M E L NP +F +T
Sbjct: 146 LDQVKRLKDNLAIPVISNGNVRTWEDVENNRAYTRADGIMVGETLLANPCVFADKTPDPV 205
Query: 381 ELASEYLDLVAQYP--VRLQYARGHVFNMCHH 410
++ EYLDL ++P +Q + HV + H
Sbjct: 206 LVSLEYLDLCREHPGTATIQTIQTHVRHFVDH 237
>gi|31742496|ref|NP_853559.1| tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like [Homo sapiens]
gi|394025765|ref|NP_001257348.1| tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like [Homo sapiens]
gi|114615410|ref|XP_001164272.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
isoform 5 [Pan troglodytes]
gi|332868275|ref|XP_519306.3| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
isoform 6 [Pan troglodytes]
gi|397479923|ref|XP_003811250.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
isoform 1 [Pan paniscus]
gi|397479925|ref|XP_003811251.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
isoform 2 [Pan paniscus]
gi|110808215|sp|O95620.2|DUS4L_HUMAN RecName: Full=tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like;
AltName: Full=pp35; AltName: Full=tRNA-dihydrouridine
synthase 4-like
gi|51095148|gb|EAL24391.1| protein similar to E.coli yhdg and R. capsulatus nifR3 [Homo
sapiens]
gi|119603807|gb|EAW83401.1| dihydrouridine synthase 4-like (S. cerevisiae), isoform CRA_c [Homo
sapiens]
gi|119603808|gb|EAW83402.1| dihydrouridine synthase 4-like (S. cerevisiae), isoform CRA_c [Homo
sapiens]
gi|119603810|gb|EAW83404.1| dihydrouridine synthase 4-like (S. cerevisiae), isoform CRA_c [Homo
sapiens]
gi|410221688|gb|JAA08063.1| dihydrouridine synthase 4-like [Pan troglodytes]
gi|410257808|gb|JAA16871.1| dihydrouridine synthase 4-like [Pan troglodytes]
gi|410297188|gb|JAA27194.1| dihydrouridine synthase 4-like [Pan troglodytes]
gi|410339643|gb|JAA38768.1| dihydrouridine synthase 4-like [Pan troglodytes]
Length = 317
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 139/241 (57%), Gaps = 6/241 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 90 ANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +TV+ + E G + VHGRT ++R ++ I ++
Sbjct: 150 TPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEERHQPV---HYDSIKIIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IPVIANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 207 ENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVD 266
Query: 389 L 389
+
Sbjct: 267 I 267
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQ 87
>gi|344270847|ref|XP_003407253.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Loxodonta africana]
Length = 317
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 141/244 (57%), Gaps = 6/244 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYNCDLCYTPMIVAADFVRSLKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V ++ V+
Sbjct: 90 ANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVKNEVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P +S KIRI+ D+ +TV+ R E G + VHGRTV++R ++ I ++
Sbjct: 150 NPRFSISIKIRIHGDLTRTVDLCRKAEATGVSWITVHGRTVEERHQPV---HYDAIKIIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IPVIANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 207 ENMSIPVIANGDIKTLKEAENVWQITGTNGVMVARGLLANPAMFAGYEETPLKCIWDWVD 266
Query: 389 LVAQ 392
+ +
Sbjct: 267 IALE 270
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYNCDLCYTPMIVAADFVRSLKARDSEFTTNQGDCPLIVQ 87
>gi|395539169|ref|XP_003771545.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Sarcophilus harrisii]
Length = 317
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 98/270 (36%), Positives = 151/270 (55%), Gaps = 17/270 (6%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 ICAPMVRYSKLAFRTLVRKYNCDLCYTPMIVAADFVRSIKARDSEFTTNKGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V ++ V+
Sbjct: 90 ANDAQLLSDAARIVYPYANGIDINCGCPQRWAITEGYGACLINKPELVRDMVKQVKSQVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +TV+ R E G + VHGR +++R ++ I ++
Sbjct: 150 NPKFSVSIKIRIHDDLTRTVDLCRKAEATGVSWITVHGRNIEERHQPV---HYDAIKIIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ +++P+IANG+I+ L + E TG G+M A G L NPA+F G + +++D
Sbjct: 207 ENVSVPIIANGDIKSLKEAENVQEITGTNGIMVARGLLANPAMFAGYKETPLKCIWDWVD 266
Query: 389 LVAQYPVRLQYARGHVFNMC--HHLLTLPE 416
+ ++ G F MC HHL+ + E
Sbjct: 267 IALEH--------GTPF-MCFHHHLMYMME 287
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
I APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 ICAPMVRYSKLAFRTLVRKYNCDLCYTPMIVAADFVRSIKARDSEFTTNKGDCPLIVQ 87
>gi|148704961|gb|EDL36908.1| dihydrouridine synthase 4-like (S. cerevisiae), isoform CRA_a [Mus
musculus]
Length = 327
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 146/269 (54%), Gaps = 6/269 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 33 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRSIKARDSEFTTNQGDCPLIVQFA 92
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA L P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 93 ANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINKPELVHDMVRQVRNRVE 152
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +T++ R E G + VHGRTV++R ++ I ++
Sbjct: 153 SPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVEERHQPV---HYDAIKMIK 209
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IP++ANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 210 ENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLTNPAMFAGYEETPLKCIWDWVD 269
Query: 389 LVAQYPVRLQYARGHVFNMCHHLLTLPEN 417
+ + H+ M + + E
Sbjct: 270 ISLELGTPFMCFHQHLMYMMEKITSRQEK 298
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 33 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRSIKARDSEFTTNQGDCPLIVQ 90
>gi|21312100|ref|NP_082278.1| tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like [Mus musculus]
gi|12845370|dbj|BAB26724.1| unnamed protein product [Mus musculus]
Length = 324
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 146/269 (54%), Gaps = 6/269 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRSIKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA L P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 90 ANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINKPELVHDMVRQVRNRVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +T++ R E G + VHGRTV++R ++ I ++
Sbjct: 150 SPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVEERHQPV---HYDAIKMIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IP++ANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 207 ENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLTNPAMFAGYEETPLKCIWDWVD 266
Query: 389 LVAQYPVRLQYARGHVFNMCHHLLTLPEN 417
+ + H+ M + + E
Sbjct: 267 ISLELGTPFMCFHQHLMYMMEKITSRQEK 295
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRSIKARDSEFTTNQGDCPLIVQ 87
>gi|322795085|gb|EFZ17930.1| hypothetical protein SINV_15746 [Solenopsis invicta]
Length = 357
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 158/302 (52%), Gaps = 7/302 (2%)
Query: 142 IFPRLGSPRFI--LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 199
I L PR I APMV S+L +R L R+YG +C+TPM+ A F+ K R +
Sbjct: 12 IVAVLKEPRMIKICAPMVRYSKLQFRTLVRQYGCDICFTPMILADSFVQSSKARDNEFTT 71
Query: 200 TPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 259
D+PLI+QF N + +A+ + P+C+G+D+N GCPQ A + YGA L L+
Sbjct: 72 HKNDQPLIVQFAANTVNDFVDASVMVAPYCNGVDLNCGCPQRWAMQEGYGADLLKKPELV 131
Query: 260 TNLVSSLRQAVQVP--VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
+LV +R + P VS KIR+ +D+ +T+ + LE+AG L VH RT R
Sbjct: 132 KDLVYQVRNRIPRPFTVSAKIRLLKDIRQTILLCQTLEKAGASFLTVHARTPKMRNEPID 191
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
L S + + R + +P++ANG+ + L ++ ++ GVM+A G L NPALF+G +
Sbjct: 192 LDSLKFL---RDHVQLPLVANGDAKSLETAKSLFKESRCEGVMSARGILTNPALFSGYSV 248
Query: 378 PAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAV 437
++L++ + P Q H+ M +L + + L K++ ++ L+
Sbjct: 249 TPLTCIQDWLNITSTIPTEFQCFHHHLIFMLEKILPKKDRTLFNSLQSKSSVLEFLKDYY 308
Query: 438 DM 439
D+
Sbjct: 309 DV 310
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 64 HSSTARSDAWTQLGSPRFI--LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK 121
++T +D L PR I APMV S+L +R L R+YG +C+TPM+ A F+ K
Sbjct: 4 ENNTMTTDIVAVLKEPRMIKICAPMVRYSKLQFRTLVRQYGCDICFTPMILADSFVQSSK 63
Query: 122 LRQEILMSTPEDRPLIIQ 139
R + D+PLI+Q
Sbjct: 64 ARDNEFTTHKNDQPLIVQ 81
>gi|110808216|sp|Q32M08.1|DUS4L_MOUSE RecName: Full=tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like;
AltName: Full=tRNA-dihydrouridine synthase 4-like
gi|80478497|gb|AAI09352.1| Dihydrouridine synthase 4-like (S. cerevisiae) [Mus musculus]
Length = 324
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 146/269 (54%), Gaps = 6/269 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRSIKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA L P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 90 ANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINKPELVHDMVRQVRNRVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +T++ R E G + VHGRTV++R ++ I ++
Sbjct: 150 SPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVEERHQPV---HYDAIKMIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IP++ANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 207 ENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVD 266
Query: 389 LVAQYPVRLQYARGHVFNMCHHLLTLPEN 417
+ + H+ M + + E
Sbjct: 267 ISLELGTPFMCFHQHLMYMMEKITSRQEK 295
Score = 52.4 bits (124), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRSIKARDSEFTTNQGDCPLIVQ 87
>gi|148704962|gb|EDL36909.1| dihydrouridine synthase 4-like (S. cerevisiae), isoform CRA_b [Mus
musculus]
Length = 324
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 146/269 (54%), Gaps = 6/269 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRSIKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA L P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 90 ANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINKPELVHDMVRQVRNRVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +T++ R E G + VHGRTV++R ++ I ++
Sbjct: 150 SPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVEERHQPV---HYDAIKMIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IP++ANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 207 ENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLTNPAMFAGYEETPLKCIWDWVD 266
Query: 389 LVAQYPVRLQYARGHVFNMCHHLLTLPEN 417
+ + H+ M + + E
Sbjct: 267 ISLELGTPFMCFHQHLMYMMEKITSRQEK 295
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRSIKARDSEFTTNQGDCPLIVQ 87
>gi|312079658|ref|XP_003142269.1| tRNA-dihydrouridine synthase 4 [Loa loa]
gi|307762565|gb|EFO21799.1| tRNA-dihydrouridine synthase 4 [Loa loa]
Length = 333
Score = 172 bits (435), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 145/269 (53%), Gaps = 14/269 (5%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
P F+ APMV S+LP+R+L R Y + +TPM+ A FIA ++ R + P D P I+
Sbjct: 30 PVFVAAPMVRYSKLPFRMLVRLYAVDVAFTPMIYAKHFIASEQCRSAEFSTCPGDNPTIV 89
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
QF N+ + AA + GID+N GCPQ + YG+ L D + ++V++ R+
Sbjct: 90 QFATNNPEEFFTAAMFISRYSRGIDLNCGCPQRDVMKEGYGSSLLVDPERIADIVATARR 149
Query: 269 AVQVP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+ P VS KIR+ + T+E R E+AG + VHGRT +QR + A +E I
Sbjct: 150 RISKPDFTVSIKIRLKTNRQLTLETCRQAEKAGVSFITVHGRTPEQR---SEPADYEMIK 206
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
++ +L+IPVIANGNI+ + TGV GVM+A G L NPA+F G T + ++
Sbjct: 207 LIKSSLSIPVIANGNIKSYEQALQVVKYTGVDGVMSANGLLENPAMFAGYTSTPKQCVAD 266
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTL 414
++ L +Y G F++ H L
Sbjct: 267 WVRLATEY--------GCPFDLFHQQLMF 287
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 19/149 (12%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P F+ APMV S+LP+R+L R Y + +TPM+ A FIA ++ R + P D P I+
Sbjct: 30 PVFVAAPMVRYSKLPFRMLVRLYAVDVAFTPMIYAKHFIASEQCRSAEFSTCPGDNPTIV 89
Query: 139 QRTIFPRLGSPRFILAPM--------VDAS-ELPWR-LLSRRYGSHLCYTP------MVS 182
Q F F A M +D + P R ++ YGS L P + +
Sbjct: 90 Q---FATNNPEEFFTAAMFISRYSRGIDLNCGCPQRDVMKEGYGSSLLVDPERIADIVAT 146
Query: 183 AHQFIADKKLRQEILMSTPEDRPLIIQFC 211
A + I+ I + +R L ++ C
Sbjct: 147 ARRRISKPDFTVSIKIRLKTNRQLTLETC 175
>gi|406602283|emb|CCH46121.1| tRNA-dihydrouridine synthase [Wickerhamomyces ciferrii]
Length = 340
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 104/319 (32%), Positives = 168/319 (52%), Gaps = 14/319 (4%)
Query: 130 TPEDRPL-IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIA 188
PE+ P+ II+R + G P FI PMV S+LP+R L R Y + L Y+PM+ A +F+
Sbjct: 8 NPENNPIRIIERC--RKEGRPVFIAGPMVRYSKLPFRSLVREYNTDLVYSPMILAREFVR 65
Query: 189 DKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHY 248
++ R + D PLI+Q N+ +L ++ P DGI IN GCP R
Sbjct: 66 NEFARLSDFTTNNYDTPLIVQVGTNNVTDLLRFVEMIHPFVDGIGINCGCPIKEQIREGI 125
Query: 249 GAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHG 306
GA L + L++++V +++Q +V + KIRI+ D+N+TV++ + +E+AG + VHG
Sbjct: 126 GAALMSEPDLVSDMVYAVKQKYGDKVCIETKIRIHPDLNETVKFVQKVEKAGVDFITVHG 185
Query: 307 RTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366
RT R ++ A++E I + +++++PVIANG+ L D + +T V GVM G L
Sbjct: 186 RTKTTR--SSQPANFEAIKLMNESVSVPVIANGDCFSLNDAYEIVKKTKVDGVMAVRGIL 243
Query: 367 YNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGK 426
NPALF G + W ++ + Y + + + HHL + + + L +
Sbjct: 244 DNPALFAGYEKAPWGCIEKFWEYSTSYGLTYRLLQ-------HHLSCMLDGRIPKELYKE 296
Query: 427 TNHIKDLRKAVDMLRERFI 445
IK L + +D FI
Sbjct: 297 MMDIKTLAQLIDFFDNNFI 315
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 77 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 136
G P FI PMV S+LP+R L R Y + L Y+PM+ A +F+ ++ R + D PL
Sbjct: 24 GRPVFIAGPMVRYSKLPFRSLVREYNTDLVYSPMILAREFVRNEFARLSDFTTNNYDTPL 83
Query: 137 IIQRTIFPRLGSPRFI--LAPMVDA 159
I+Q RF+ + P VD
Sbjct: 84 IVQVGTNNVTDLLRFVEMIHPFVDG 108
>gi|401406011|ref|XP_003882455.1| dihydrouridine synthase domain-containing protein [Neospora caninum
Liverpool]
gi|325116870|emb|CBZ52423.1| dihydrouridine synthase domain-containing protein [Neospora caninum
Liverpool]
Length = 568
Score = 171 bits (434), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 107/335 (31%), Positives = 154/335 (45%), Gaps = 47/335 (14%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLR----QEILM 128
W +G PRF++APMVDASEL +RLL RRYG L YTPM+ + F+ D K R Q +
Sbjct: 33 WDSIGRPRFVMAPMVDASELAFRLLGRRYGVDLAYTPMMHSRLFVDDPKYRAVHWQTLRS 92
Query: 129 STPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIA 188
S+ R + P VD + P+ +
Sbjct: 93 SSAATRQACSEDEQEEEKEESECARPPFVDGT------------GRETDEPVFVQFCAVL 140
Query: 189 DKKLRQEILMSTPEDRPLIIQF-----------CGNDSKNLTEAAKLAEPHCDGIDINIG 237
D+ +++ P R G+ + L AA+L E D +D+N G
Sbjct: 141 DEAGSLSVVLGLPFSREKFRSLTLLGLAPVRVHAGDSPETLLAAAQLVEDEVDAVDLNFG 200
Query: 238 CPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY---------------- 281
CPQ +A+RGHYGA+L + LL ++VS+L + ++ PV+CK+R
Sbjct: 201 CPQGIARRGHYGAFLLHESELLIDIVSTLHKHLRTPVTCKMRKVSPRPTAALPRSTTALV 260
Query: 282 ----QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA 337
+ + T+ E AGC L +HGRT +++ G W I ++ L+IPVIA
Sbjct: 261 LDEERRLQDTLRLCDAFEAAGCACLCIHGRTKEEKASLVGPCDWLAIRHAKERLSIPVIA 320
Query: 338 NGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
NG ++ D CL TG VM+AEG L NP LF
Sbjct: 321 NGGVETYEDALRCLEFTGADAVMSAEGLLDNPLLF 355
>gi|296411986|ref|XP_002835709.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629498|emb|CAZ79866.1| unnamed protein product [Tuber melanosporum]
Length = 459
Score = 171 bits (433), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 115/351 (32%), Positives = 177/351 (50%), Gaps = 26/351 (7%)
Query: 147 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQ--FIADKKLRQEILMSTPEDR 204
G ++ APMV S+LP+R L R YG LCYTPMVS + +IA K + DR
Sbjct: 27 GRVLYVQAPMVRYSKLPFRALVRDYGVDLCYTPMVSLKRLYWIASAKKLLLDFTTNASDR 86
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PLI QF + S + + AA+L +P+ DG+D+N GCPQ A + G L L+ +V
Sbjct: 87 PLIAQFGAHSSIDFSRAAELVKPYTDGVDLNCGCPQSWAIQEGIGCRLMQQPQLVKEMVR 146
Query: 265 SLRQ--AVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
+ + VS KIR++ D+ +TV++ +M+E +G + +HGR QR ++ + E
Sbjct: 147 AAKDRCGEDFCVSIKIRVHHDLRETVDFVKMVESSGVDYITIHGRRRSQR--SSEPVNSE 204
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWEL 382
I V+ +P++ANG++ L D E + TGV GVM A G + NPALF G + W
Sbjct: 205 AIALVKSLAGVPIVANGDVFSLGDAERIVGITGVDGVMAARGLMENPALFAGFKKTPWGA 264
Query: 383 ASEYLDLVAQY-PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLR 441
+L A Y P+ Q A +V M ++T E +++ T + + + ++ L+
Sbjct: 265 VERFLHYNANYGPLPYQLALHNVGEMLRDMMTKKERAEM------TRNSGSIVEILNWLK 318
Query: 442 ERFIDYHEGRKLWPPPNYPMSSNHHNL--------SLPPWICQPY-VRPTP 483
+R I GR + S N N+ SL C + V P+P
Sbjct: 319 QRGI----GRIYARSRVWKGSKNGENIIATRILKTSLSSRACDGFWVNPSP 365
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 71 DAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQ--FIADKKLRQEILM 128
D G ++ APMV S+LP+R L R YG LCYTPMVS + +IA K
Sbjct: 21 DLAKSAGRVLYVQAPMVRYSKLPFRALVRDYGVDLCYTPMVSLKRLYWIASAKKLLLDFT 80
Query: 129 STPEDRPLIIQ 139
+ DRPLI Q
Sbjct: 81 TNASDRPLIAQ 91
>gi|395818443|ref|XP_003782638.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Otolemur garnettii]
Length = 317
Score = 171 bits (433), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 94/244 (38%), Positives = 139/244 (56%), Gaps = 6/244 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSIKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND+ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V +R V
Sbjct: 90 ANDASLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQVG 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+++TV+ R E G + VHGRT ++R ++ I ++
Sbjct: 150 NPRFSVSIKIRIHDDLSRTVDLCRKAEATGVSWITVHGRTTEERHQPV---HYDAIKIIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IPVIANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 207 ENMSIPVIANGDIRSLKEAENVWQNTGTDGVMVARGLLANPAMFAGFEETPLKCIWDWVD 266
Query: 389 LVAQ 392
+ +
Sbjct: 267 IALE 270
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSIKARDSEFTTNQGDCPLIVQ 87
>gi|323451531|gb|EGB07408.1| hypothetical protein AURANDRAFT_71832 [Aureococcus anophagefferens]
Length = 557
Score = 171 bits (433), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 107/260 (41%), Positives = 157/260 (60%), Gaps = 21/260 (8%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I+APMV SEL +RLL RR+G+ YTPM+ A +F+ D R + L + EDRPL+ FC
Sbjct: 128 IVAPMVGGSELAFRLLCRRHGATAAYTPMMEATRFVEDAAFRAQYLQTHAEDRPLVAHFC 187
Query: 212 GNDSKNLTEAAKLAEP--HCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVSSLR 267
GND + A LA D +D+N+GCPQ VA GHYG+YL ++D L+ ++V+++R
Sbjct: 188 GNDPGVVGRACALAAATGGVDAVDLNLGCPQRVAFAGHYGSYLMREEDRDLVKSIVAAMR 247
Query: 268 QAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT-----VDQRGMNTGLAS 320
++V ++ V KIR+ D T++ L AG Q++A+HGR G G A
Sbjct: 248 RSVPREIAVCVKIRLMDDFPATLKLVEDLRDAGAQVVAIHGRKRATWHRKGPGARDGPAD 307
Query: 321 WEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG---- 374
+ I V +A+ ++ V++NGN++ DV+A LA TG AGVM+AEG L +PALF+G
Sbjct: 308 LDSIARVVRAVGDSVVVVSNGNVRDRGDVDAGLATTGAAGVMSAEGLLDDPALFSGPALS 367
Query: 375 ----QTRPAWELASEYLDLV 390
+ +LA++YLDLV
Sbjct: 368 DDAAEDLRKLKLAADYLDLV 387
>gi|313235191|emb|CBY25064.1| unnamed protein product [Oikopleura dioica]
Length = 286
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 155/291 (53%), Gaps = 13/291 (4%)
Query: 156 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDS 215
MV S LP+R L R++ +C++PM+ + FI R L S ED PL++QF N
Sbjct: 1 MVRYSRLPFRALCRKFNVDVCFSPMLISDSFINSASARDADLRSNAEDGPLVVQFAANKG 60
Query: 216 KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV---QV 272
++ + A++ HC+GID+N GCPQ +YG L LL ++V R+A+ +
Sbjct: 61 EDFAKVAQMLYGHCEGIDLNCGCPQRWVNALNYGDILMKQPELLADIVLQARRAIPDSEF 120
Query: 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT 332
+S K R++ D++ T+E AR +E+AG +L++HGRT +R + E I+ + + L+
Sbjct: 121 SISVKTRVFDDLHTTIEMARRIEKAGATMLSIHGRTHGERDHPVRI---ETISTIVETLS 177
Query: 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQ 392
IPV NG+I+ D + TGV GVM A G L+NP LF + E+ +E+ + +
Sbjct: 178 IPVNYNGSIRTREDAQLAYESTGVGGVMVARGLLHNPGLFDDRRLGDPEVLTEWTKIALE 237
Query: 393 YPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
+ H+ M + T PE R+ N ++ + +AV LRER
Sbjct: 238 LGIPYSSYHKHLMYMLDKVTTRPE---TRVF----NSLQSMLQAVSWLRER 281
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 86 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
MV S LP+R L R++ +C++PM+ + FI R L S ED PL++Q
Sbjct: 1 MVRYSRLPFRALCRKFNVDVCFSPMLISDSFINSASARDADLRSNAEDGPLVVQ 54
>gi|68478245|ref|XP_716864.1| potential tRNA dihydrouridine synthase [Candida albicans SC5314]
gi|68478366|ref|XP_716804.1| potential tRNA dihydrouridine synthase [Candida albicans SC5314]
gi|46438488|gb|EAK97818.1| potential tRNA dihydrouridine synthase [Candida albicans SC5314]
gi|46438550|gb|EAK97879.1| potential tRNA dihydrouridine synthase [Candida albicans SC5314]
gi|238882442|gb|EEQ46080.1| tRNA-dihydrouridine synthase 4 [Candida albicans WO-1]
Length = 339
Score = 171 bits (432), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 159/309 (51%), Gaps = 12/309 (3%)
Query: 147 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 206
G P +I PMV S+LP+R L R Y + YTPM+ A +F+ ++ R + D+ +
Sbjct: 24 GRPAYIAGPMVRYSKLPFRELCRFYDVDIVYTPMILAREFVRNEVARSTDFTTNDSDKCV 83
Query: 207 IIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSL 266
I+Q N+ + + ++ P DGI IN GCP R GA L D L+ L+ +
Sbjct: 84 IVQVGVNNVDDFMKFIEMIHPFVDGIGINCGCPIKEQVREGIGAALMSDPDLVAELIKTA 143
Query: 267 RQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
+ + + KIRI++D+N+T+++ + AG L VHGRT + R ++ + + I
Sbjct: 144 KDKYGDSICIDTKIRIHRDINQTIDFVNKVVEAGTDTLTVHGRTKNTR--SSVPVNLDAI 201
Query: 325 TAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
+R+ + TIPVIANG+ L D + + TGV GVM+A G L NPALFTG + W
Sbjct: 202 KIIRENVTTIPVIANGDCFTLTDFQKIVDYTGVDGVMSARGVLANPALFTGLDKTPWSAV 261
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
+L LV Y + + A+ +HL L E+ R V N K++ +D L E
Sbjct: 262 EMFLHLVTAYGLPYKLAQ-------YHLAKLMEDVIPRKYVKAINEKKNMVDIIDYLDEH 314
Query: 444 FIDYHEGRK 452
F +G K
Sbjct: 315 FDLKRKGDK 323
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
+ G P +I PMV S+LP+R L R Y + YTPM+ A +F+ ++ R + D+
Sbjct: 22 EKGRPAYIAGPMVRYSKLPFRELCRFYDVDIVYTPMILAREFVRNEVARSTDFTTNDSDK 81
Query: 135 PLIIQRTIFPRLGSPRFI--LAPMVDA 159
+I+Q + +FI + P VD
Sbjct: 82 CVIVQVGVNNVDDFMKFIEMIHPFVDG 108
>gi|148228148|ref|NP_001089272.1| dihydrouridine synthase 4-like [Xenopus laevis]
gi|58702004|gb|AAH90192.1| MGC85035 protein [Xenopus laevis]
Length = 308
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 150/286 (52%), Gaps = 6/286 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 20 ISAPMVRYSKLAFRTLVRKYDCDLCYTPMIIAADFVKSVKARDSEFTTNQGDCPLIVQFA 79
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV- 270
+++ L +AA L P GID+N GCPQ A YGA L ++ L++++V +R V
Sbjct: 80 AKEAQVLADAASLVSPFASGIDLNCGCPQRWAMAEGYGACLINNPELVSDMVRQVRNQVG 139
Query: 271 --QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+ +S KIRI+ D+++TV+ R E AG + VHGRT D+R + I ++
Sbjct: 140 SSEFTISIKIRIHADISRTVDLCRKAEAAGVSWITVHGRTHDERHQPV---HYNAIKNIK 196
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
++L+IP++ANG+I+ L + E TG GVM A G L NPA+F G +++D
Sbjct: 197 ESLSIPIVANGDIKSLKEAENIHQITGADGVMAARGLLANPAMFAGYEETPLACIQDWVD 256
Query: 389 LVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLR 434
+ ++ H+ M + + E +L + + LR
Sbjct: 257 IALEHGTPFTCLHHHLMYMMERITSKQEKRIFNILSSTSAVLDYLR 302
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
I APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 20 ISAPMVRYSKLAFRTLVRKYDCDLCYTPMIIAADFVKSVKARDSEFTTNQGDCPLIVQ 77
>gi|4097493|gb|AAD00100.1| PP35 [Homo sapiens]
Length = 307
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/244 (38%), Positives = 138/244 (56%), Gaps = 6/244 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 20 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFA 79
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 80 ANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQVE 139
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI D+ +TV+ + E G + VHGRT ++R ++ I ++
Sbjct: 140 TPGFSVSIKIRINDDLKRTVDLCQKAEATGVSWITVHGRTAEERHQPV---HYDSIKIIK 196
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ + IPVIANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 197 ENMCIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVD 256
Query: 389 LVAQ 392
+ +
Sbjct: 257 IALE 260
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 20 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQ 77
>gi|392589128|gb|EIW78459.1| FMN-linked oxidoreductase [Coniophora puteana RWD-64-598 SS2]
Length = 363
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 160/313 (51%), Gaps = 38/313 (12%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD-------------KKLRQEI 196
R+I APMV+ S+ P+R L+RRYG+ L YT M++ + I D K +++E
Sbjct: 8 RYIAAPMVNQSDFPFRQLTRRYGATLAYTQMLAPERLINDQDYLETHLRDLWEKHVQEEA 67
Query: 197 -----------LMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKR 245
+T P+++Q CGND + + AA+ + HCDGID+N+GCPQ A+
Sbjct: 68 RSHMHASHRVCAQTTRNAPPVVVQLCGNDPETIVRAARTVQQHCDGIDLNLGCPQEHARE 127
Query: 246 GHYGAYL--QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLA 303
GHYG YL + DWPL+ ++ VPVS KIR+ Q T+ +LE +G +
Sbjct: 128 GHYGGYLLGRKDWPLVQSI---------VPVSTKIRLCQHAPDTLPLGTLLEASGTSWVT 178
Query: 304 VHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363
+H R V R G+A + + ++ +L IPVI+NGN++ D++ T G M E
Sbjct: 179 LHARHVSARRRRQGVADLQVVKELKDSLRIPVISNGNVRTWNDLQDNRTYTSADGCMVGE 238
Query: 364 GNLYNPALFTGQTRPAWELASEYLDLVAQYP--VRLQYARGHVFNMCHHLLTL-PENSDV 420
L NP +F +++ EYL+L ++ + R HV H + P +
Sbjct: 239 TLLGNPCIFANIVPDPVQISLEYLELCREHQGCATIHDVRAHVRRFVEHQCSRKPWYAKF 298
Query: 421 RLLVGKTNHIKDL 433
R+ + +T I+D+
Sbjct: 299 RVAINQTESIEDI 311
>gi|324517466|gb|ADY46829.1| tRNA-dihydrouridine synthase-like protein [Ascaris suum]
Length = 348
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 141/269 (52%), Gaps = 14/269 (5%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
P F+ APMV S+LP+R L R YG+ L YTPM++A+ FI ++ R + D P I+
Sbjct: 56 PLFVAAPMVRYSKLPFRSLVRLYGADLVYTPMINANNFITSEECRSSEFTTNKYDSPTIV 115
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
QF ND A +L +C G+D+N GCP+ RG YG+ L + ++++ R+
Sbjct: 116 QFASNDPVEFAAATELVYRYCSGVDLNCGCPKRDVMRGGYGSSLLSTPERIADMIAHARR 175
Query: 269 AV---QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+ Q +S KIR+ D+ +TVE R +E AG + VHGRT QR + A+ E I
Sbjct: 176 RIADTQFTISVKIRLNNDIRRTVELCRQVESAGASYICVHGRTPTQR---SEPANHEAIA 232
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
V+ A+ IP+IANG I + +T GVM A G L NPA+F G + +
Sbjct: 233 LVKSAMRIPIIANGAIGSYQEALQVAKRTQTDGVMAANGLLDNPAMFAGHDSTPVQCVLD 292
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTL 414
+L + A+ +G F++ H L
Sbjct: 293 WLRITAE--------QGSAFDLFHQQLIF 313
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 29/154 (18%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P F+ APMV S+LP+R L R YG+ L YTPM++A+ FI ++ R + D P I+
Sbjct: 56 PLFVAAPMVRYSKLPFRSLVRLYGADLVYTPMINANNFITSEECRSSEFTTNKYDSPTIV 115
Query: 139 QRTIFPRLGSPRFILAPMVDASELPWRLLS---------RR------YGSHLCYTP---- 179
Q F F A+EL +R S +R YGS L TP
Sbjct: 116 Q---FASNDPVEF-----AAATELVYRYCSGVDLNCGCPKRDVMRGGYGSSLLSTPERIA 167
Query: 180 --MVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ A + IAD + + + D ++ C
Sbjct: 168 DMIAHARRRIADTQFTISVKIRLNNDIRRTVELC 201
>gi|448531879|ref|XP_003870351.1| Dus4 protein [Candida orthopsilosis Co 90-125]
gi|380354705|emb|CCG24221.1| Dus4 protein [Candida orthopsilosis]
Length = 344
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 164/300 (54%), Gaps = 13/300 (4%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
P +I PMV S+LP+R L R Y + YTPM+ A +F+ + R + +D+P+I+
Sbjct: 27 PAYIAGPMVRYSKLPFRELCRFYKVDIVYTPMILAREFVRNDIARYSDFTTNDKDQPVIV 86
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
Q ++ ++ + ++ P+ DGI IN GCP R GA L L+ +L+++ +
Sbjct: 87 QVGVSNVEDFMKFIEMIHPYVDGIGINCGCPIRDQIREGIGAALMSKPRLVADLITTAKA 146
Query: 269 AV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
+ + KIRI+ D+N+T+E+ +++E AG ++ +HGRT R ++ + + I
Sbjct: 147 KYGDSICIDTKIRIHNDINETIEFVKLIEEAGTDIITIHGRTKTTR--SSVPVNLDAIKT 204
Query: 327 VRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
+R+ + ++PVIANG+ L D TGV GVM+A G L NPALFTG + W
Sbjct: 205 LRQNIKSVPVIANGDCFTLDDCNRIAEYTGVDGVMSARGVLANPALFTGLNKTPWSAIEM 264
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDV-RLLVGKTNHIKDLRKAVDMLRERF 444
++ L Y + + ++ +H++ L EN D+ R ++ + N K++ +D+L + F
Sbjct: 265 FMHLTTSYGIPYKLSQ-------YHVVQLMENMDIPRRIIKEINESKNMIDIIDLLDKYF 317
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P +I PMV S+LP+R L R Y + YTPM+ A +F+ + R + +D+P+I+
Sbjct: 27 PAYIAGPMVRYSKLPFRELCRFYKVDIVYTPMILAREFVRNDIARYSDFTTNDKDQPVIV 86
Query: 139 QRTIFPRLGSPRFI--LAPMVDA 159
Q + +FI + P VD
Sbjct: 87 QVGVSNVEDFMKFIEMIHPYVDG 109
>gi|294655199|ref|XP_002770100.1| DEHA2B07942p [Debaryomyces hansenii CBS767]
gi|199429763|emb|CAR65470.1| DEHA2B07942p [Debaryomyces hansenii CBS767]
Length = 364
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 152/284 (53%), Gaps = 4/284 (1%)
Query: 131 PEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK 190
P+ PL I ++ P FI PMV S+LP+R L R + + + YTPM+ A +F+ +
Sbjct: 30 PQHNPLRILKSARSDNNRPAFIAGPMVRYSKLPFRELVRNFNTDIVYTPMILAREFVRND 89
Query: 191 KLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGA 250
R + DR +I+Q N+ K+L + + P+ DGI +N GCP R GA
Sbjct: 90 IARLSDFTTNAGDRSVIVQVGCNNVKDLLKFVDMIHPYVDGIGLNCGCPIKEQVREGIGA 149
Query: 251 YLQDDWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308
L + L++++V +++ + V + KIRI+ D+N+T+++ +++E+ G + VHGRT
Sbjct: 150 ALMSEPELVSSMVKAVKDKYKDSVVIETKIRIHPDINETIKFVKLVEKNGVDFITVHGRT 209
Query: 309 VDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368
+ R ++ A+++ I A+++++ +PV+ANG+ L D TGV G+M G L N
Sbjct: 210 KNTR--SSQPANFDAIKAIKESVAVPVVANGDCFSLKDAYEIAEYTGVDGIMAVRGILSN 267
Query: 369 PALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLL 412
P LF G W + DL Y + + + H+ M ++
Sbjct: 268 PGLFGGYENTPWSAVEIFWDLATSYGLPFRITQHHLSEMLDKVI 311
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 67 TARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEI 126
+ARSD P FI PMV S+LP+R L R + + + YTPM+ A +F+ + R
Sbjct: 40 SARSDN----NRPAFIAGPMVRYSKLPFRELVRNFNTDIVYTPMILAREFVRNDIARLSD 95
Query: 127 LMSTPEDRPLIIQ 139
+ DR +I+Q
Sbjct: 96 FTTNAGDRSVIVQ 108
>gi|448085668|ref|XP_004195917.1| Piso0_005344 [Millerozyma farinosa CBS 7064]
gi|359377339|emb|CCE85722.1| Piso0_005344 [Millerozyma farinosa CBS 7064]
Length = 359
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 163/322 (50%), Gaps = 11/322 (3%)
Query: 135 PLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ 194
PL I + G P FI PMV S+LP+R L R + + + YTPM+ A +F+ + R
Sbjct: 29 PLSILQNCKQTKGRPAFIAGPMVRYSKLPFRELVRNFNTDIVYTPMILAREFVRNDIARL 88
Query: 195 EILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
+ DRP+I+Q N++ +L + P+ DGI +N GCP + GA L
Sbjct: 89 SDFTTNNADRPVIVQVGCNNATDLLRFVDMIHPYVDGIGLNCGCPIKEQVKEGIGAALMS 148
Query: 255 DWPLLTNLVSSLRQ--AVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR 312
+ L+ ++V ++Q V + KIRI+ D+N+T+ +A+ +E +G + VHGRT + R
Sbjct: 149 EPDLVADMVKVVKQKYGSSVVLETKIRIHSDINETLRFAKKVEASGVDFITVHGRTKNTR 208
Query: 313 GMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
++ A+ + I V++ +++PV+ANG+ L D TGV GVM G L NPALF
Sbjct: 209 --SSQPANHDAIKLVKENVSVPVVANGDCYSLEDAYRIAEYTGVDGVMAVRGILANPALF 266
Query: 373 TGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKD 432
G + W +L L A Y + + + H+ M ++ R ++ + N +
Sbjct: 267 AGFDKTPWMAVEIFLHLAASYGLPFRITQHHLSEMLDKIIP-------RKVLKEMNEKTN 319
Query: 433 LRKAVDMLRERFIDYHEGRKLW 454
L +D L F EG + +
Sbjct: 320 LIDLIDWLDATFYVKREGEEGY 341
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%)
Query: 77 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 136
G P FI PMV S+LP+R L R + + + YTPM+ A +F+ + R + DRP+
Sbjct: 41 GRPAFIAGPMVRYSKLPFRELVRNFNTDIVYTPMILAREFVRNDIARLSDFTTNNADRPV 100
Query: 137 IIQ 139
I+Q
Sbjct: 101 IVQ 103
>gi|66802582|ref|XP_635163.1| tRNA-dihydrouridine synthase 4-like protein [Dictyostelium
discoideum AX4]
gi|60463479|gb|EAL61664.1| tRNA-dihydrouridine synthase 4-like protein [Dictyostelium
discoideum AX4]
Length = 344
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 147/268 (54%), Gaps = 9/268 (3%)
Query: 133 DRPLII-----QRTIFPRLGSPRF--ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQ 185
D+P++ ++ + R+ S F I APMV S LP+R+L +++G + YTPM+ A +
Sbjct: 32 DKPIVKIYDSDKQNLMDRINSGEFMKIQAPMVRFSRLPFRMLVKKWGCDITYTPMIMAAE 91
Query: 186 FIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKR 245
F + R D PLI+QF N+++ L AA+ + +C GIDIN GCPQ +
Sbjct: 92 FNRSEAARDSDFTINKLDEPLIVQFGVNNAEELVSAAEKVKDYCQGIDINCGCPQRWVMK 151
Query: 246 GHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVH 305
+GA L + ++V + V +P+S KIR+ D+ T+E A+ ER G + VH
Sbjct: 152 EGFGANLLLHPERIYDMVKQINNRVPIPISIKIRVQSDLKDTIELAKRAERIGVSWITVH 211
Query: 306 GRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365
GRT + + ++ I V+ +T+PV ANG++ L+ +TGV GVM+A G
Sbjct: 212 GRTSAMKSSHP--VDYDAIKLVKDNVTLPVFANGDVFTLSQSNEIREKTGVNGVMSARGL 269
Query: 366 LYNPALFTGQTRPAWELASEYLDLVAQY 393
L NPALF G + E +++++ ++Y
Sbjct: 270 LTNPALFQGYDKTPIECIKDFINIYSEY 297
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 66 STARSDAWTQLGSPRF--ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLR 123
+ + + ++ S F I APMV S LP+R+L +++G + YTPM+ A +F + R
Sbjct: 40 DSDKQNLMDRINSGEFMKIQAPMVRFSRLPFRMLVKKWGCDITYTPMIMAAEFNRSEAAR 99
Query: 124 QEILMSTPEDRPLIIQ 139
D PLI+Q
Sbjct: 100 DSDFTINKLDEPLIVQ 115
>gi|194765699|ref|XP_001964964.1| GF22896 [Drosophila ananassae]
gi|190617574|gb|EDV33098.1| GF22896 [Drosophila ananassae]
Length = 148
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 71/117 (60%), Positives = 93/117 (79%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LGSPR+++APMVD SEL WR+L RRYG+HLCYTPM A+ F D K R++ L + DRP
Sbjct: 25 LGSPRYVVAPMVDQSELAWRMLCRRYGAHLCYTPMYHANLFATDPKYRKDALQTCAGDRP 84
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
L+IQFCGND++ + +AA A+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT +
Sbjct: 85 LVIQFCGNDAQQILDAALAAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEI 141
Score = 90.5 bits (223), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 50/66 (75%)
Query: 74 TQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPED 133
+ LGSPR+++APMVD SEL WR+L RRYG+HLCYTPM A+ F D K R++ L + D
Sbjct: 23 STLGSPRYVVAPMVDQSELAWRMLCRRYGAHLCYTPMYHANLFATDPKYRKDALQTCAGD 82
Query: 134 RPLIIQ 139
RPL+IQ
Sbjct: 83 RPLVIQ 88
>gi|449684650|ref|XP_002157580.2| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Hydra magnipapillata]
Length = 311
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 157/302 (51%), Gaps = 11/302 (3%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
+I APMV S+ P+R L RRY L YTPM+ A FI + R + +DRPL++QF
Sbjct: 11 YICAPMVRYSKQPFRHLVRRYNCDLAYTPMIMADSFIKSIEARDSDFTTNKDDRPLVVQF 70
Query: 211 CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
N++++L AA++ P+ DG+ +N GCPQ A YGA L L+ +++ RQ +
Sbjct: 71 AANNAEDLALAAEIIYPYADGVGLNCGCPQRWAMAEGYGAQLISKPELINDMIKQTRQRL 130
Query: 271 --QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
KIRI+ D+ KTV+ + E AG + VHGR QR +++ I ++
Sbjct: 131 PQDFSFEIKIRIHSDIRKTVDLCQKAEHAGVSWITVHGRLPSQRNEPV---NYDAIKTIK 187
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+L IPV+ANG+I+ D + +TGV GVM A+G L NPA++ G + ++++
Sbjct: 188 DSLQIPVVANGDIKNKEDAWDVVKKTGVNGVMAAQGMLNNPAMYAGYEVTPLQCVKDWVN 247
Query: 389 LVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFIDYH 448
+ H+ M L+ N ++L N++ + +D L +R+ +
Sbjct: 248 IALSLGTPFVTFHHHLIFMLDKWLS---NKGEKMLF---NNLSSVAAVLDFLEDRYDISY 301
Query: 449 EG 450
+G
Sbjct: 302 DG 303
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
+I APMV S+ P+R L RRY L YTPM+ A FI + R + +DRPL++Q
Sbjct: 11 YICAPMVRYSKQPFRHLVRRYNCDLAYTPMIMADSFIKSIEARDSDFTTNKDDRPLVVQF 70
Query: 141 TI--FPRLGSPRFILAPMVDASEL----PWR-LLSRRYGSHLCYTP 179
L I+ P D L P R ++ YG+ L P
Sbjct: 71 AANNAEDLALAAEIIYPYADGVGLNCGCPQRWAMAEGYGAQLISKP 116
>gi|332022244|gb|EGI62559.1| tRNA-dihydrouridine synthase 4-like protein [Acromyrmex echinatior]
Length = 745
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 96/272 (35%), Positives = 145/272 (53%), Gaps = 8/272 (2%)
Query: 146 LGSPRFI--LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPED 203
L PR I APMV S+L +R L RRYG +C+TPM+ A F+ K R + D
Sbjct: 9 LKEPRMIKICAPMVRYSKLQFRTLVRRYGCDICFTPMILADSFVQSSKARDNEFTTHEGD 68
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
PLI+QF + A+ + P+C+G+D+N GCPQ A + YGA L L+ +LV
Sbjct: 69 EPLIVQFAAKTVNDFVSASVMVAPYCNGVDLNCGCPQRWAMQEGYGADLLKKPELVKDLV 128
Query: 264 SSLRQAVQVP--VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+R + P VS KIR+ +D+ KT+ + LE+AG L +H RT + R L
Sbjct: 129 YQVRNRIPKPFTVSAKIRLLKDIRKTITLCQTLEKAGASFLTIHARTPEMRNEPIDL--- 185
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWE 381
++ +R + +P+IANG+++ L + E ++ GVM+A G L NPALF+G
Sbjct: 186 NNLKLLRDYVQLPLIANGDVKSLENAEFLFKESRCEGVMSARGILTNPALFSGYPVTPLV 245
Query: 382 LASEYLDLVAQYPVRLQYARGH-VFNMCHHLL 412
++LD+ + Q + H VF +C + L
Sbjct: 246 CVQDWLDITSTMSTEFQCFQHHLVFILCGNGL 277
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 70 SDAWTQLGSPRFI--LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL 127
+D L PR I APMV S+L +R L RRYG +C+TPM+ A F+ K R
Sbjct: 3 TDVMVTLKEPRMIKICAPMVRYSKLQFRTLVRRYGCDICFTPMILADSFVQSSKARDNEF 62
Query: 128 MSTPEDRPLIIQ---RTIFPRLGSPRFILAPMVDASEL----PWR-LLSRRYGSHLCYTP 179
+ D PLI+Q +T+ S ++AP + +L P R + YG+ L P
Sbjct: 63 TTHEGDEPLIVQFAAKTV-NDFVSASVMVAPYCNGVDLNCGCPQRWAMQEGYGADLLKKP 121
>gi|324510450|gb|ADY44369.1| tRNA-dihydrouridine synthase-like protein [Ascaris suum]
Length = 560
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 141/269 (52%), Gaps = 14/269 (5%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
P F+ APMV S+LP+R L R YG+ L YTPM++A+ FI ++ R + D P I+
Sbjct: 268 PLFVAAPMVRYSKLPFRSLVRLYGADLVYTPMINANNFITSEECRSSEFTTNKYDSPTIV 327
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
QF ND A +L +C G+D+N GCP+ RG YG+ L + ++++ R+
Sbjct: 328 QFASNDPVEFAAATELVYRYCSGVDLNCGCPKRDVMRGGYGSSLLSTPERIADMIAHARR 387
Query: 269 AV---QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+ Q +S KIR+ D+ +TVE R +E AG + VHGRT QR + A+ E I
Sbjct: 388 RIADTQFTISVKIRLNNDIRRTVELCRQVESAGASYICVHGRTPTQR---SEPANHEAIA 444
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
V+ A+ IP+IANG I + +T GVM A G L NPA+F G + +
Sbjct: 445 LVKSAMRIPIIANGAIGSYQEALQVAKRTQTDGVMAANGLLDNPAMFAGHDSTPVQCVLD 504
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTL 414
+L + A+ +G F++ H L
Sbjct: 505 WLRITAE--------QGSAFDLFHQQLIF 525
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 68/154 (44%), Gaps = 29/154 (18%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P F+ APMV S+LP+R L R YG+ L YTPM++A+ FI ++ R + D P I+
Sbjct: 268 PLFVAAPMVRYSKLPFRSLVRLYGADLVYTPMINANNFITSEECRSSEFTTNKYDSPTIV 327
Query: 139 QRTIFPRLGSPRFILAPMVDASELPWRLLS---------RR------YGSHLCYTP---- 179
Q F F A+EL +R S +R YGS L TP
Sbjct: 328 Q---FASNDPVEF-----AAATELVYRYCSGVDLNCGCPKRDVMRGGYGSSLLSTPERIA 379
Query: 180 --MVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ A + IAD + + + D ++ C
Sbjct: 380 DMIAHARRRIADTQFTISVKIRLNNDIRRTVELC 413
>gi|224093091|ref|XP_002192992.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Taeniopygia guttata]
Length = 316
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 148/275 (53%), Gaps = 6/275 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 28 ICAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSAKARDSEFTTNKGDHPLIVQFA 87
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
+++ L +AA + P DGID+N GCPQ A YGA L + L+ ++V +R +
Sbjct: 88 AKEAQVLCDAACIICPFADGIDVNCGCPQRWAISEGYGACLINKPELVKDMVRHVRNQID 147
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI++D+ +TV+ + E AG + VHGRT+++R ++ I ++
Sbjct: 148 NPKFSVSIKIRIHEDLKRTVDLCQKAEAAGVSWITVHGRTIEERHQPV---HYDAIKIIK 204
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
++++IP++ANG+I+ L + E T GVM A G L NPA+F G ++ +++D
Sbjct: 205 QSMSIPIVANGDIKSLKEAENVHHLTEADGVMVARGLLANPAMFAGYEETPFQCIQDWVD 264
Query: 389 LVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+ ++ H+ M + + E +L
Sbjct: 265 IALEHGTPFTCFHHHLMYMMERITSKQEKRVFNVL 299
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
I APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 28 ICAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSAKARDSEFTTNKGDHPLIVQFA 87
Query: 142 IFPR--LGSPRFILAPMVDASEL----PWR-LLSRRYGSHLCYTP 179
L I+ P D ++ P R +S YG+ L P
Sbjct: 88 AKEAQVLCDAACIICPFADGIDVNCGCPQRWAISEGYGACLINKP 132
>gi|448081184|ref|XP_004194826.1| Piso0_005344 [Millerozyma farinosa CBS 7064]
gi|359376248|emb|CCE86830.1| Piso0_005344 [Millerozyma farinosa CBS 7064]
Length = 354
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 96/322 (29%), Positives = 164/322 (50%), Gaps = 11/322 (3%)
Query: 135 PLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ 194
PL I + G P FI PMV S+LP+R L R + + + YTPM+ A +F+ + R
Sbjct: 29 PLSILQNCKKTQGRPAFIAGPMVRYSKLPFRELVRNFNTDIVYTPMILAREFVRNDIARL 88
Query: 195 EILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
+ DRP+I+Q N++ +L + P+ DGI +N GCP + GA L
Sbjct: 89 SDFTTNNADRPVIVQVGCNNATDLLRFVDMIHPYVDGIGLNCGCPIKEQVKEGIGAALMS 148
Query: 255 DWPLLTNLVSSLRQ--AVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR 312
+ L+ ++V +++Q + + KIRI+ D+N+T+ +A+ +E +G + VHGRT + R
Sbjct: 149 EPDLVADMVKAVKQKYGSSIVLETKIRIHSDINETLRFAKKVEASGVDFITVHGRTKNTR 208
Query: 313 GMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
++ A+ + I V++ +++PV+ANG+ L D TGV GVM G L NPA+F
Sbjct: 209 --SSQPANHDAIKLVKENVSVPVVANGDCFSLEDAHRIAEYTGVDGVMAVRGILANPAIF 266
Query: 373 TGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKD 432
G + W +L L Y + + + H+ M ++ R ++ + N +
Sbjct: 267 AGYDKTPWMAVEIFLHLATSYGLPFRITQHHLSEMMDKMIP-------RKVLKEMNEKTN 319
Query: 433 LRKAVDMLRERFIDYHEGRKLW 454
L +D L + F +G + +
Sbjct: 320 LIDLIDWLDDTFYVKRKGEEGY 341
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 42 IPQECHSPAARCKGTNVVPKD--CHSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSR 99
IP+ ++ AR + P+D C+ + + G P FI PMV S+LP+R L R
Sbjct: 4 IPRPSNNGGARTLLEKLSPRDAACNPLSILQNCKKTQGRPAFIAGPMVRYSKLPFRELVR 63
Query: 100 RYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ + + YTPM+ A +F+ + R + DRP+I+Q
Sbjct: 64 NFNTDIVYTPMILAREFVRNDIARLSDFTTNNADRPVIVQ 103
>gi|242011621|ref|XP_002426546.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]
gi|212510683|gb|EEB13808.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]
Length = 332
Score = 168 bits (425), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 143/263 (54%), Gaps = 5/263 (1%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LC+TPM+ A FI +K R ++ D P+I+QF
Sbjct: 15 VCAPMVRYSKLEFRSLVRQYDCDLCFTPMIMADSFIKSEKARINEFTTSSNDSPVIVQFA 74
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV- 270
N++ + +EAAKL P DG+D+N GCPQ A + GA L + + ++V +++ +
Sbjct: 75 ANNTFDFSEAAKLVFPFSDGVDLNCGCPQRWAMKIGIGAQLLSEPETIKDIVLNVKNQIS 134
Query: 271 -QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK 329
VS K+R+ D+ TV+ + LE+ G L +HGRT +QR +A+ + I
Sbjct: 135 CNYSVSVKLRLLNDIKSTVDLCKKLEKTGVTFLTIHGRTKEQRSEPVNIAAIKDIV---D 191
Query: 330 ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDL 389
++ IP+IANG+++ L D + TG GVM+A G L NP+LF G E +++D+
Sbjct: 192 SVQIPIIANGDVKTLQDAQLLQQLTGCQGVMSARGLLQNPSLFQGYNETPLECVKKWVDI 251
Query: 390 VAQYPVRLQYARGHVFNMCHHLL 412
+ H+ M +L
Sbjct: 252 SLNSNIHFTTFHHHLVFMLEKIL 274
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LC+TPM+ A FI +K R ++ D P+I+Q
Sbjct: 15 VCAPMVRYSKLEFRSLVRQYDCDLCFTPMIMADSFIKSEKARINEFTTSSNDSPVIVQ 72
>gi|357613396|gb|EHJ68482.1| tRNA-dihydrouridine synthase [Danaus plexippus]
Length = 366
Score = 168 bits (425), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 96/298 (32%), Positives = 156/298 (52%), Gaps = 11/298 (3%)
Query: 156 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDS 215
MV S++ +R L + YG LC+TPM+ A F ++K R ++T D PLI+QF N+
Sbjct: 1 MVRYSKVQFRTLVKNYGVDLCFTPMILADSFCQNEKARSNEFITTTNDTPLIVQFAANNV 60
Query: 216 KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVP 273
+ +A++L P+ DG+D+N GCPQ A + YG L L+ NL+ S+R +
Sbjct: 61 DDFVDASQLVYPYADGVDLNCGCPQRWAMKDGYGCALLSRPELVHNLLRSVRNNLPSHFS 120
Query: 274 VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT-VDQRGMNTGLASWEHITAVRKALT 332
VS K+RI+QD+ KT+ + LE+ G + VHGRT + + G N + E + V +
Sbjct: 121 VSVKVRIFQDLKKTITMCQQLEQCGVNFMTVHGRTPLQKSGDNIDV---EMLKEVCDLVK 177
Query: 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQ 392
IPV+ANG I+ L D E + G+M A+G L NPALFTG + +++L
Sbjct: 178 IPVVANGGIKSLYDAEQLYSTLNCDGIMVADGILNNPALFTGANKTPLYCVKHWMNLKDS 237
Query: 393 YPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFIDYHEG 450
++ + H HHL+ + + + N++ D + +++ +D +G
Sbjct: 238 SDDKITFQCYH-----HHLVFMLGKILTKKQKQEFNNLSDFDEVDVYIKKYVLDSFDG 290
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 86 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPR 145
MV S++ +R L + YG LC+TPM+ A F ++K R ++T D PLI+Q F
Sbjct: 1 MVRYSKVQFRTLVKNYGVDLCFTPMILADSFCQNEKARSNEFITTTNDTPLIVQ---FAA 57
Query: 146 LGSPRFILAPMVDASELPW 164
F VDAS+L +
Sbjct: 58 NNVDDF-----VDASQLVY 71
>gi|198429785|ref|XP_002120440.1| PREDICTED: similar to MGC79829 protein [Ciona intestinalis]
Length = 305
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 156/302 (51%), Gaps = 15/302 (4%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
P I APMV S+ +RLL R+Y + YTPM+ A F+ RQ +++ +D PLI+
Sbjct: 14 PTKICAPMVRYSKHAFRLLVRKYDCDIAYTPMIVAKSFLESDSCRQNEFITSKDDTPLIV 73
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
QF ++K +EA++L P G+ +N GCPQ A YGA L + + + +
Sbjct: 74 QFAAKNAKEFSEASELIYPFASGVGLNCGCPQRWAMAEGYGAKLLQKPEEIVDFIRFTKA 133
Query: 269 AV---QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
V + +S KIR+++++ +TVE R LE+AG ++VHGRT +R ++ I
Sbjct: 134 LVSDEKFTISVKIRLHEELARTVEMCRGLEKAGASFVSVHGRTSKERHQPV---HYDAIK 190
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
++++++IP++ANG + D + TG GVM A+G L NPALF G +
Sbjct: 191 ILKESVSIPIVANGGVNTYKDFDKVHKMTGANGVMVAQGLLNNPALFQGYKTTPLSCVKD 250
Query: 386 YLDLVAQYPVRLQYARGHVFNMCH-HLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
+LD+ Y G F H HL+ + +N R N+++ ++ L + F
Sbjct: 251 WLDISLSY--------GTPFTPFHNHLIYMLDNVTSRAEKRIFNNLQSTPAVLEFLNKYF 302
Query: 445 ID 446
+D
Sbjct: 303 VD 304
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P I APMV S+ +RLL R+Y + YTPM+ A F+ RQ +++ +D PLI+
Sbjct: 14 PTKICAPMVRYSKHAFRLLVRKYDCDIAYTPMIVAKSFLESDSCRQNEFITSKDDTPLIV 73
Query: 139 Q 139
Q
Sbjct: 74 Q 74
>gi|170099590|ref|XP_001881013.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643692|gb|EDR07943.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 234
Score = 167 bits (424), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 137/228 (60%), Gaps = 8/228 (3%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK-----LRQEILMSTPE-D 203
R+I APMV ++ P+RLL R+YG+ L YT M+ + + D+ LR + S +
Sbjct: 7 RYIAAPMVKQADGPFRLLVRKYGASLTYTQMLLPDRILNDQDYLEYHLRDLSIASDDGLE 66
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTN 261
RP++IQ CG+D + + +A + + HCD ID+N+GCPQ A+ GH+GAYL Q +WPL+
Sbjct: 67 RPVVIQLCGHDPQTIVKAGRKLQGHCDAIDLNLGCPQESARDGHFGAYLLGQKNWPLVEE 126
Query: 262 LVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+VS++ + VPV+ K+R+ Q + T++ ++ LE G + +H R V R G A+
Sbjct: 127 IVSAMSSSFSVPVTAKLRLCQPSHATLDLSQRLEACGVSWVTLHARNVSARRRRQGSANL 186
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
+ + ++ L +PV++NGN++ +D+ A TG GVM E L NP
Sbjct: 187 DEVKRLKGNLQVPVVSNGNVREFSDLLANTEYTGADGVMVGETLLGNP 234
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK-----LRQ-EILMSTPED 133
R+I APMV ++ P+RLL R+YG+ L YT M+ + + D+ LR I +
Sbjct: 7 RYIAAPMVKQADGPFRLLVRKYGASLTYTQMLLPDRILNDQDYLEYHLRDLSIASDDGLE 66
Query: 134 RPLIIQ 139
RP++IQ
Sbjct: 67 RPVVIQ 72
>gi|395324906|gb|EJF57338.1| FMN-linked oxidoreductase [Dichomitus squalens LYAD-421 SS1]
Length = 352
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/256 (36%), Positives = 146/256 (57%), Gaps = 8/256 (3%)
Query: 156 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK---LRQEILMSTPEDRPLIIQFCG 212
MV+ S+LP+R+L R+Y + L YT M+ + + D + + L TP D P+++Q CG
Sbjct: 1 MVNQSDLPFRILVRQYDASLVYTQMLLPERLLNDTEYLEFHRRGLHDTP-DAPVVVQLCG 59
Query: 213 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVSSLRQAV 270
ND + + AA+ D ID+N+GCPQ A+ GHYG YL + DWPL+ ++VS+L ++
Sbjct: 60 NDPEVVVRAARTVVDKADAIDLNLGCPQDAAREGHYGGYLLEKKDWPLVESIVSALSHSL 119
Query: 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA 330
VPVS KIR+ Q+ T + LE A + +H R V R G A E + +++
Sbjct: 120 PVPVSTKIRLCQNTALTSDLGVRLEAARSSWITLHARHVSARRRRQGAADLEQVRVLKET 179
Query: 331 LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLV 390
+ +PV++NGN++ DV+A TG GVM E L NP LF T +++ EYL++
Sbjct: 180 VGVPVVSNGNVRTWEDVQANRKMTGADGVMVGETLLANPCLFANVTPDPVKISLEYLEVC 239
Query: 391 AQYP--VRLQYARGHV 404
++P +Q + HV
Sbjct: 240 REHPGTATMQTIQTHV 255
>gi|328868434|gb|EGG16812.1| tRNA-dihydrouridine synthase 4-like protein [Dictyostelium
fasciculatum]
Length = 346
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 99/304 (32%), Positives = 160/304 (52%), Gaps = 7/304 (2%)
Query: 122 LRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMV 181
L+ +++ +D+ +++R G I APMV S+LP+RLL +++G L ++PM+
Sbjct: 32 LKDLKIVTDDQDKTSVMERI---NRGDFLHIAAPMVRFSKLPFRLLCKKWGCDLTFSPML 88
Query: 182 SAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQM 241
A F + R + D LI+QF ND + L+ A + HC G+DIN GCPQ
Sbjct: 89 LAESFNRSEFARDSDFTTNQFDNSLIVQFAANDGEELSAAVEKVANHCQGVDINCGCPQK 148
Query: 242 VAKRGHYGAYLQDDWPLLTNLV-SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQ 300
R + GA L + ++ ++ R+ +P+S KIRI +D+++T+E A+ ERAG
Sbjct: 149 WIIRENMGAGLLTTPEKIEEMIKTTTRRITNIPLSIKIRIQKDMSQTIELAKRAERAGVS 208
Query: 301 LLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVM 360
+ VHGRT QR + ++ I V++++ IPV ANG+I L +T V GVM
Sbjct: 209 WITVHGRTSSQRSSHP--VDYDAIKLVKESIGIPVFANGDIFTLDQANDIRDKTKVNGVM 266
Query: 361 TAEGNLYNPALFTGQTRPAWELASEYLDLVAQY-PVRLQYARGHVFNMCHHLLTLPENSD 419
+A G L NPAL+ G E E++D+ +Q + H+ M + + + E +
Sbjct: 267 SARGILCNPALYMGYDTTPIECIKEFIDINSQIGGLNTDIFHRHLMYMLYSVNSKAEKKE 326
Query: 420 VRLL 423
LL
Sbjct: 327 FNLL 330
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
I APMV S+LP+RLL +++G L ++PM+ A F + R + D LI+Q
Sbjct: 59 IAAPMVRFSKLPFRLLCKKWGCDLTFSPMLLAESFNRSEFARDSDFTTNQFDNSLIVQ 116
>gi|401842715|gb|EJT44807.1| DUS1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 154
Score = 165 bits (418), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/147 (51%), Positives = 105/147 (71%), Gaps = 3/147 (2%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEI--- 196
R +F ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++
Sbjct: 7 RQLFDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSP 66
Query: 197 LMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
L + DRPL++QFC ND +L AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W
Sbjct: 67 LDGSDGDRPLVVQFCANDPVHLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEW 126
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQD 283
L+ NL+S+L + ++V VS KIRI+ +
Sbjct: 127 DLIHNLISTLHKNLKVAVSAKIRIFDE 153
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEI---LMS 129
+ ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++ L
Sbjct: 10 FDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSPLDG 69
Query: 130 TPEDRPLIIQ 139
+ DRPL++Q
Sbjct: 70 SDGDRPLVVQ 79
>gi|327293319|ref|XP_003231356.1| dihydrouridine synthase [Trichophyton rubrum CBS 118892]
gi|326466472|gb|EGD91925.1| dihydrouridine synthase [Trichophyton rubrum CBS 118892]
Length = 456
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 108/171 (63%), Gaps = 23/171 (13%)
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
DRPLI+QFC ND L +AA+ E +CD +D+N+GCPQ +AK+GHYGA+LQ+D L+ L
Sbjct: 45 DRPLIVQFCANDPDELLKAARHVEEYCDAVDLNLGCPQGIAKKGHYGAFLQEDPDLIYKL 104
Query: 263 VSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
++ L + +PV+ K RI + KT+EYARM+ AG +L+VHGR +Q+G NTG+A+W+
Sbjct: 105 INKLHNELSIPVTAKFRILETKEKTLEYARMILSAGASILSVHGRRREQKGHNTGVANWD 164
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
D+ CL TG GVM+AEGNL +P +F+
Sbjct: 165 -----------------------DISRCLEVTGADGVMSAEGNLSDPTIFS 192
>gi|428182359|gb|EKX51220.1| hypothetical protein GUITHDRAFT_66170 [Guillardia theta CCMP2712]
Length = 352
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 135/247 (54%), Gaps = 2/247 (0%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+LP+R + R +G L YTPM+ A FIA + R + DRP+I+QF
Sbjct: 7 IAAPMVRFSKLPFRHVVRSWGCELVYTPMIMAESFIASSRARDIEFTTNHHDRPVIVQFA 66
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
+D+ L++AA L DG+DIN GCPQ A + GA L L+ ++V R++
Sbjct: 67 AHDAMELSKAAALLAGKVDGVDINCGCPQRWAIKEGVGAALLKKPELVRDMVKMTRESSG 126
Query: 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL 331
+PVS KIR D+ +T+ R+ E G + +HGRT + + ++ I V++ L
Sbjct: 127 LPVSIKIRTDPDLKETLRLTRLAEEVGVSFITLHGRTALSKPSDP--VDFDAIRLVKEHL 184
Query: 332 TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVA 391
+P++ANG+++ L DV TG G M A G L NPA+F+G + E ++Y+
Sbjct: 185 RVPLVANGDVKQLQDVYDIFNSTGADGAMAARGLLVNPAMFSGYDQTPTECVNDYVYSAL 244
Query: 392 QYPVRLQ 398
Q R +
Sbjct: 245 QLGTRFE 251
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
I APMV S+LP+R + R +G L YTPM+ A FIA + R + DRP+I+Q
Sbjct: 7 IAAPMVRFSKLPFRHVVRSWGCELVYTPMIMAESFIASSRARDIEFTTNHHDRPVIVQ 64
>gi|341889683|gb|EGT45618.1| hypothetical protein CAEBREN_21814 [Caenorhabditis brenneri]
Length = 307
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 131/246 (53%), Gaps = 6/246 (2%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
F LAPMV S+L +R L R Y +CYTPM+ A FI +K R L DRPLI+QF
Sbjct: 19 FYLAPMVRYSKLAFRQLVRLYDVDVCYTPMIYAKNFIESEKCRNSELSVCEGDRPLIVQF 78
Query: 211 CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
+D L EAA++ G+D+N GCP+ + +G+ L LL ++V R +
Sbjct: 79 ATDDPFVLAEAAEMVYSCSTGVDLNCGCPKHDVRSKGFGSALLSKPELLADMVRQTRARI 138
Query: 271 ---QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
VS KIR+ D+ KTV+ R E AG L VHGRT QR + + I V
Sbjct: 139 PDENFSVSLKIRVNHDIEKTVDLCRKAESAGVTHLTVHGRTPSQRAEPIDIKA---IRIV 195
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYL 387
++++++PVIANG I L + E QTGV G+M A G L NPALF G + ++
Sbjct: 196 KESVSVPVIANGGITSLQEAEFLAEQTGVDGIMAANGLLDNPALFAGHAYTPSDCVQNFM 255
Query: 388 DLVAQY 393
L ++
Sbjct: 256 RLSKEH 261
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 35/59 (59%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
F LAPMV S+L +R L R Y +CYTPM+ A FI +K R L DRPLI+Q
Sbjct: 19 FYLAPMVRYSKLAFRQLVRLYDVDVCYTPMIYAKNFIESEKCRNSELSVCEGDRPLIVQ 77
>gi|195156341|ref|XP_002019059.1| GL26162 [Drosophila persimilis]
gi|194115212|gb|EDW37255.1| GL26162 [Drosophila persimilis]
Length = 398
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 167/332 (50%), Gaps = 24/332 (7%)
Query: 128 MSTPEDRPLIIQRTIFPRLGSPRF--ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQ 185
M P+ RP +F P F + APMV S+L +R L R G L +TPM+ +
Sbjct: 1 MHLPQQRPHHDIAALFA-AAQPDFLRVSAPMVRYSKLEFRRLVRMNGVQLAFTPMMISDS 59
Query: 186 FIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKR 245
+K RQ + P+D+PLI QF D+ +A+L P+ DGID+N GCPQ A
Sbjct: 60 INNSEKARQNEFSTDPDDQPLIAQFAAKDATEFVTSAQLIYPYVDGIDLNCGCPQSWAMS 119
Query: 246 GHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIY-----QDVNKTVEYARMLERAG 298
YG L + +V +R+ + VS K+R+ V +T++ AR LERAG
Sbjct: 120 KGYGCGLLRQPEQVREVVQQVRRTLPSDFSVSVKMRLLGGSEEDSVERTIDLARQLERAG 179
Query: 299 CQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358
L +HGRT Q+ L + + VRK+L IP+I NGN++ +D AQTG AG
Sbjct: 180 VTFLTLHGRTPAQKHSKDTL-NVSAMEEVRKSLQIPLIVNGNVESWSDACELHAQTGAAG 238
Query: 359 VMTAEGNLYNPALF-----TGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLT 413
VM A G L NPALF T T P+ ++LD+ + L +F HH LT
Sbjct: 239 VMAARGLLANPALFNSDYPTATTTPS-ACVEQWLDIASAAGDNL------LFQCFHHHLT 291
Query: 414 LPENSDV-RLLVGKTNHIKDLRKAVDMLRERF 444
+S++ R L + N + ++ VD LRE +
Sbjct: 292 FMWSSEMKRSLRVQFNSLGTKQQVVDFLREHY 323
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
+ APMV S+L +R L R G L +TPM+ + +K RQ + P+D+PLI Q
Sbjct: 26 VSAPMVRYSKLEFRRLVRMNGVQLAFTPMMISDSINNSEKARQNEFSTDPDDQPLIAQ-- 83
Query: 142 IFPRLGSPRFILA-----PMVDASEL------PWRLLSRRYGSHLCYTP 179
F + F+ + P VD +L W +S+ YG L P
Sbjct: 84 -FAAKDATEFVTSAQLIYPYVDGIDLNCGCPQSW-AMSKGYGCGLLRQP 130
>gi|123414609|ref|XP_001304522.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121885980|gb|EAX91592.1| hypothetical protein TVAG_323330 [Trichomonas vaginalis G3]
Length = 322
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 105/325 (32%), Positives = 166/325 (51%), Gaps = 26/325 (8%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 199
R I LG +LAP + ++L +R+L R+Y LC+T MV++H + R +
Sbjct: 7 REIINGLGEVPIVLAPQFEVNDLAFRMLVRKYNVKLCWTGMVNSHMWAIQPSSRNSYFQT 66
Query: 200 TPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 259
+DRPLIIQ GND L AK + GIDIN GC Q +A+RG YG ++ ++
Sbjct: 67 CSQDRPLIIQMSGNDESELIACAKDLQQFAVGIDINCGCTQHIARRGQYGYFMVNNENKR 126
Query: 260 TNLVSSLRQ---AVQVPVSCKIRIYQ------DVNKTVEYARMLERAGCQLLAVHGRTVD 310
N++ ++ ++ VP+S K R+ DV+ T ++A+ LE AG L++VHGR
Sbjct: 127 KNVIEMVKNIVASINVPLSIKFRLIDGEDGKPDVDITCKFAKELEDAGVSLISVHGRA-- 184
Query: 311 QRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ G E I + ++++IPV+ANG ++ + ++ AGVM +G L NP
Sbjct: 185 KNSNKAGPVDAEAIRKIAESVSIPVMANGGVRTKEEAIEMFKESHAAGVMVGQGLLMNPK 244
Query: 371 LF--TGQTRPAWELASEYLDLVAQYPV-RLQYARGHVFNMCHHLLTLPENSDVRLLVGKT 427
F T + P ++ EYL L +YP AR H+FN ++ + N V + T
Sbjct: 245 AFSDTPEHDPV-AISREYLQLWKEYPDPNFFIARRHIFNFFDEIVRV--NKPVGDYLKTT 301
Query: 428 NHIKDLRKAVDMLRERFI-DYHEGR 451
+ I++L E F+ DY G+
Sbjct: 302 HSIEEL--------ESFLTDYENGK 318
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 65 SSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ 124
SS + LG +LAP + ++L +R+L R+Y LC+T MV++H + R
Sbjct: 2 SSNPLREIINGLGEVPIVLAPQFEVNDLAFRMLVRKYNVKLCWTGMVNSHMWAIQPSSRN 61
Query: 125 EILMSTPEDRPLIIQRT 141
+ +DRPLIIQ +
Sbjct: 62 SYFQTCSQDRPLIIQMS 78
>gi|125986951|ref|XP_001357238.1| GA10353 [Drosophila pseudoobscura pseudoobscura]
gi|54645569|gb|EAL34307.1| GA10353 [Drosophila pseudoobscura pseudoobscura]
Length = 398
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 166/332 (50%), Gaps = 24/332 (7%)
Query: 128 MSTPEDRPLIIQRTIFPRLGSPRF--ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQ 185
M P+ RP +F P F + APMV S+L +R L R G L +TPM+ +
Sbjct: 1 MHLPQQRPHHDIAALFA-AAQPDFLRVSAPMVRYSKLEFRRLVRMNGVQLAFTPMMISDS 59
Query: 186 FIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKR 245
+K RQ + P+D+PLI QF D+ +A+L P+ DGID+N GCPQ A
Sbjct: 60 INNSEKARQNEFSTDPDDQPLIAQFAAKDATEFVTSAQLIYPYVDGIDLNCGCPQSWAMS 119
Query: 246 GHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIY-----QDVNKTVEYARMLERAG 298
YG L + +V +R+ + VS K+R+ V +T++ AR LERAG
Sbjct: 120 KGYGCGLLRQPEQVREVVQQVRRTLPSDFSVSVKMRLLGGSEEDSVERTIDLARQLERAG 179
Query: 299 CQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358
L +HGRT Q+ L + + VRK+L IP+I NGN++ +D AQTG AG
Sbjct: 180 VTFLTLHGRTPAQKHSKDTL-NVSAMEEVRKSLQIPLIVNGNVESWSDACELHAQTGAAG 238
Query: 359 VMTAEGNLYNPALF-----TGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLT 413
VM A G L NPALF T T P ++LD+ + L +F HH LT
Sbjct: 239 VMAARGLLANPALFNSDYPTATTTP-LACVEQWLDIASAAGDNL------LFQCFHHHLT 291
Query: 414 LPENSDV-RLLVGKTNHIKDLRKAVDMLRERF 444
+S++ R L + N + ++ VD LRE +
Sbjct: 292 FMWSSEMKRSLRIQFNSLGTKQQVVDFLREHY 323
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
+ APMV S+L +R L R G L +TPM+ + +K RQ + P+D+PLI Q
Sbjct: 26 VSAPMVRYSKLEFRRLVRMNGVQLAFTPMMISDSINNSEKARQNEFSTDPDDQPLIAQ-- 83
Query: 142 IFPRLGSPRFILA-----PMVDASEL------PWRLLSRRYGSHLCYTP 179
F + F+ + P VD +L W +S+ YG L P
Sbjct: 84 -FAAKDATEFVTSAQLIYPYVDGIDLNCGCPQSW-AMSKGYGCGLLRQP 130
>gi|255732059|ref|XP_002550953.1| tRNA-dihydrouridine synthase 4 [Candida tropicalis MYA-3404]
gi|240131239|gb|EER30799.1| tRNA-dihydrouridine synthase 4 [Candida tropicalis MYA-3404]
Length = 342
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 112/331 (33%), Positives = 168/331 (50%), Gaps = 19/331 (5%)
Query: 128 MSTPEDRPL-IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQF 186
+ PE RP II++ G P I PMV S+LP+R L R Y + YTPM+ A +F
Sbjct: 6 LRNPEYRPTEIIKKC--QEQGRPAHIAGPMVRYSKLPFRELCRFYNVDIVYTPMILAREF 63
Query: 187 IADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRG 246
+ ++ R + D+ +I+Q N+ ++ + + P D I IN GCP R
Sbjct: 64 VRNETARYTDFTTNDIDKSVIVQVGVNNVEDFMKFVDMIHPFVDAIGINCGCPIKEQVRE 123
Query: 247 HYGAYLQDDWPLLTNLVSSLRQ--AVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
GA L + L+ +L+ + + + + KIRI+ D+N+TVE+A+ + AG ++ V
Sbjct: 124 GIGAALMSEPDLVADLIKAAKAKYGESICIDTKIRIHSDINQTVEFAKKVVAAGTDMITV 183
Query: 305 HGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363
HGRT R +T + E I +R + TIPVIANG+ L D TGV GVM+A
Sbjct: 184 HGRTKSTR--STVPVNLEAIKIIRDNVKTIPVIANGDCFTLDDCNRIAEFTGVDGVMSAR 241
Query: 364 GNLYNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLL--TLPENSDVR 421
G L NPALFTG + W ++ L Y + + A+ HV HLL T+P+ +
Sbjct: 242 GILANPALFTGLDKTPWSAVEMFMHLATAYGLPYKLAQYHV----AHLLEDTIPK----K 293
Query: 422 LLVGKTNHIKDLRKAVDMLRERFIDYHEGRK 452
L G N ++ +D L E F+ +G K
Sbjct: 294 YLKG-INEKLNMVDLIDYLDEHFVLKRKGEK 323
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 77 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 136
G P I PMV S+LP+R L R Y + YTPM+ A +F+ ++ R + D+ +
Sbjct: 24 GRPAHIAGPMVRYSKLPFRELCRFYNVDIVYTPMILAREFVRNETARYTDFTTNDIDKSV 83
Query: 137 IIQRTIFPRLGSPRFI--LAPMVDA 159
I+Q + +F+ + P VDA
Sbjct: 84 IVQVGVNNVEDFMKFVDMIHPFVDA 108
>gi|330799310|ref|XP_003287689.1| hypothetical protein DICPUDRAFT_151810 [Dictyostelium purpureum]
gi|325082309|gb|EGC35795.1| hypothetical protein DICPUDRAFT_151810 [Dictyostelium purpureum]
Length = 324
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/313 (31%), Positives = 160/313 (51%), Gaps = 18/313 (5%)
Query: 139 QRTIFPRLGSPRF--ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEI 196
++++ ++ + F I APMV S LP+R+L R++G + YTPM+ A +F + R
Sbjct: 23 KQSLLDKINNGEFMKIQAPMVRFSRLPFRMLCRKWGCDITYTPMIMAAEFNRSESARDSD 82
Query: 197 LMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
+ + +I+QF N+++ L AA+ C GIDIN GCPQ + YGA L +
Sbjct: 83 YTTNQFEDQMIVQFGVNNAEELCAAAEKVANTCSGIDINCGCPQRWVMKEGYGANLLLNP 142
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
+ ++V L V VP S KIRI D+NKT+E + E+ G + VHGRT R +
Sbjct: 143 DKIYDMVKQLNNRVPVPCSIKIRIQPDLNKTIELVKRAEKIGVSWITVHGRTSAMRSSHP 202
Query: 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT 376
++ I V++ ++PV ANG++ L +TGV GVM A G L NPALF G
Sbjct: 203 --VDYDAIKLVKENTSLPVFANGDVFTLEQANTIKEKTGVNGVMAARGLLSNPALFMGYD 260
Query: 377 RPAWELASEYLDLVAQY----PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKD 432
+ E +++++ ++Y P+ H+ M + E S+ N IK
Sbjct: 261 KTPIECIEDFINIYSEYGGLHPIIFHR---HLIYMLYEYQNKNEKSEF-------NKIKT 310
Query: 433 LRKAVDMLRERFI 445
+ +D + ++F+
Sbjct: 311 VSGILDYINDKFL 323
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
I APMV S LP+R+L R++G + YTPM+ A +F + R + + +I+Q
Sbjct: 38 IQAPMVRFSRLPFRMLCRKWGCDITYTPMIMAAEFNRSESARDSDYTTNQFEDQMIVQ 95
>gi|443896032|dbj|GAC73376.1| tRNA-dihydrouridine synthase [Pseudozyma antarctica T-34]
Length = 366
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 154/298 (51%), Gaps = 42/298 (14%)
Query: 137 IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEI 196
++ R+ P L S + APMV S+LP+RL + R G+ +T M A I + + +
Sbjct: 1 MVVRSGLP-LESLLYCAAPMVGQSDLPFRLQTVRNGATSTWTQMYMAADIIEHQDTLESL 59
Query: 197 LMSTP----------EDRP---------LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIG 237
+ + +DR I+Q GND L +AA+ P D ID+N+G
Sbjct: 60 VKALELGRASTDNLIQDRKSSLHGSSALQIVQLAGNDVDELVDAARKVAPFADAIDLNLG 119
Query: 238 CPQMVAKRGHYGAYL--QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLE 295
CPQ A++G YGAYL + +WPLL+ +VS+L QAV VP++ KIR+ +T E A L
Sbjct: 120 CPQRHAEQGKYGAYLLPKQNWPLLSQIVSALAQAVDVPITTKIRLTVPKEQTPELAVTLA 179
Query: 296 RAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--------------TIPVIANGNI 341
RAG L+ +H R GLA + + VR+AL V++NGN+
Sbjct: 180 RAGSSLVTLHPRFASSVRRRKGLADLDQVIQVRQALQNEGLLRCTHQPDGQTAVVSNGNV 239
Query: 342 QCLADVEACLAQTGVAGVMTAEGNLYNPALF---TGQTRP---AWELASEYLDLVAQY 393
+C +D+ LA TG +GVM E L NPALF G P A E+A EY++L A+Y
Sbjct: 240 RCWSDIATNLALTGASGVMVGETLLENPALFRPSLGDLDPYPSAAEMAGEYMNLRAKY 297
>gi|323507663|emb|CBQ67534.1| related to tRNA dihydrouridine synthase [Sporisorium reilianum
SRZ2]
Length = 362
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 119/351 (33%), Positives = 175/351 (49%), Gaps = 53/351 (15%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ------EILMS 199
L S + APMV S+LP+RL + R G+ +T M A +D+ + E+ +
Sbjct: 9 LDSLLYCAAPMVGQSDLPFRLQTVRNGATSTWTQMYLASDLNSDRDMLDTLCKSLELGKA 68
Query: 200 TPE------DRPL-------IIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRG 246
PE D PL I+Q GND + L EA++ P D ID+N+GCPQ A++G
Sbjct: 69 APENIIPDKDSPLVGQAAPQIVQLAGNDVQQLVEASRKVAPFADAIDLNLGCPQRHAEQG 128
Query: 247 HYGAYL--QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
HYGAYL + +WPLL +VS L QAV VP++ KIR+ +T + A L RAG L+ +
Sbjct: 129 HYGAYLLPKQNWPLLAEIVSGLAQAVDVPITTKIRLTVPKEQTQQLAVTLARAGSSLVTL 188
Query: 305 HGRTVDQRGMNTGLASWEHITAVRKAL--------------TIPVIANGNIQCLADVEAC 350
H R GLA + + VR+AL V++NGN++C D+
Sbjct: 189 HPRFASSVRRRKGLADLDQVVHVREALQAEGLLRSADQPCGDTAVVSNGNVRCWCDIVDN 248
Query: 351 LAQTGVAGVMTAEGNLYNPALFTGQ--------TRPAWELASEYLDLVAQY-----PVRL 397
LA TG +GVM E L NPALF T P ++A EYLDL +Y P+++
Sbjct: 249 LASTGASGVMVGETLLENPALFHPSISEIDRVGTSPK-DMALEYLDLRDRYDHFESPLKV 307
Query: 398 --QYARGHVFNMCHHLLTLPEN--SDVRLLVGKTNHIKDLRKAVDMLRERF 444
Q+ + + ++ + T P+N R T+ IK ++ D+ + R
Sbjct: 308 AKQHLQSILGSIPYTTSTGPDNIAEHHRFAASMTHIIKSMQSDADLDQFRL 358
>gi|157111456|ref|XP_001651572.1| tRNA-dihydrouridine synthase [Aedes aegypti]
gi|108878341|gb|EAT42566.1| AAEL005898-PA [Aedes aegypti]
Length = 391
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/300 (33%), Positives = 158/300 (52%), Gaps = 17/300 (5%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+L +R L R YG+ L +T M+ A F +K R + +D P+I QF
Sbjct: 26 ICAPMVRYSKLEFRNLVRSYGTDLTFTSMIMADSFCQSEKARLNEFTTNRDDTPVIAQFA 85
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV- 270
++ + A ++ P+ DG+D+N GCPQ A + YG+ L L+ +++S++R+ +
Sbjct: 86 AKNAVDFLSATEMTFPYVDGVDLNCGCPQRWAMQDGYGSALLRTPELIADMLSTVRRNLP 145
Query: 271 -QVPVSCKIRIYQ-DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL-ASWEHITAV 327
VS K+R+ Q ++ T++ R LE G + VHGRT Q+ T + + E + +
Sbjct: 146 STFSVSVKVRLLQKSLSATIDMCRQLEACGITFITVHGRTPAQK---TNIPVNQEALKEI 202
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYL 387
+ +L IPV+ANG+I L D +A +T GVM+A G L NPA++ G R E +L
Sbjct: 203 KSSLGIPVVANGDIFSLQDADAMHCKTNCDGVMSARGILSNPAMYAGFERTPLECIQRWL 262
Query: 388 DLVAQYPVRLQYARGHVFNMCHHLLTLPEN---SDVRLLVGKTNHIKDLRKAVDMLRERF 444
++ AQ + Y H HHL + E+ + R++ N KD + D RE F
Sbjct: 263 NITAQADTDITYQAMH-----HHLTFMAESLLTKEQRIVFN--NLTKDKGRVYDFFREHF 315
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
I APMV S+L +R L R YG+ L +T M+ A F +K R + +D P+I Q
Sbjct: 26 ICAPMVRYSKLEFRNLVRSYGTDLTFTSMIMADSFCQSEKARLNEFTTNRDDTPVIAQ-- 83
Query: 142 IFPRLGSPRFILA-----PMVDASEL----PWR-LLSRRYGSHLCYTPMVSAHQFIAD 189
F + F+ A P VD +L P R + YGS L TP + IAD
Sbjct: 84 -FAAKNAVDFLSATEMTFPYVDGVDLNCGCPQRWAMQDGYGSALLRTP-----ELIAD 135
>gi|300120824|emb|CBK21066.2| unnamed protein product [Blastocystis hominis]
Length = 225
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 109/178 (61%), Gaps = 1/178 (0%)
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
D PLI+Q CGND + L +AA E C +D+N+GCPQ +A++G YG+YL ++ L+ +
Sbjct: 24 DSPLIVQLCGNDPEFLQKAALKFEGKCMAVDLNLGCPQGIARKGKYGSYLLPNYNLVEQI 83
Query: 263 VSSLR-QAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+L + VQ P + KIR+ + T++ +MLER G Q++ +HGRT +Q TG W
Sbjct: 84 AKALGGEEVQFPFTVKIRLLPSLEDTIKLCKMLEREGAQMITIHGRTREQNKDRTGACDW 143
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPA 379
+ I +RK L+IPV ANG I L DV C+ +TGV GVM E L NPA F PA
Sbjct: 144 QAIATIRKELSIPVFANGGICSLEDVTKCIEETGVCGVMVGEAILENPAFFVNGIDPA 201
>gi|123475588|ref|XP_001320971.1| dihydrouridine synthase [Trichomonas vaginalis G3]
gi|121903787|gb|EAY08748.1| dihydrouridine synthase, putative [Trichomonas vaginalis G3]
Length = 318
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 162/309 (52%), Gaps = 18/309 (5%)
Query: 143 FPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 202
+ + G LAPM + S+L WR+L R +G +C+T M++AHQ+ + + + PE
Sbjct: 12 WKKFGEKPICLAPMAEISDLSWRMLIRNHGVKVCWTGMLNAHQWSQGSGYQNKFFNTCPE 71
Query: 203 DRPLIIQFCGN--DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
D PLI Q G+ D + AAK + DG+D+N+GC Q +A R YG ++ D+
Sbjct: 72 DHPLIAQIAGSNEDQDLIVAAAKDLAKYADGVDVNLGCTQKIASRSEYGYFMVDNCQKRE 131
Query: 261 NLVSSLR---QAVQVPVSCKIRIYQDVNK------TVEYARMLERAGCQLLAVHGRTVDQ 311
+ R + V P+ KIRI+ D + T+++A+ LE AG LL VHGR +
Sbjct: 132 KTLELFRRLCKEVNCPICAKIRIFIDDSGEVSEKITIDFAKKLEEAGVSLLQVHGRA-EH 190
Query: 312 RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371
R + + E I + +A+ IPV+ANG I + D + +TG AGV A+ L +P
Sbjct: 191 RNKQADVYN-EIIKHIVQAVNIPVVANGGINTVEDAHKFMEETGAAGVSVAQALLKDPTA 249
Query: 372 F--TGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNH 429
F TG+ +P + A EYL+L + VR + H+F + + EN ++ + ++
Sbjct: 250 FDPTGK-KPRKDYALEYLNLSKEKGVRFFGPKKHIF--IFYEKEIRENKELAKQIEQSTT 306
Query: 430 IKDLRKAVD 438
I+ L + V+
Sbjct: 307 IEQLIEFVN 315
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 62 DCHSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK 121
D HS A W + G LAPM + S+L WR+L R +G +C+T M++AHQ+
Sbjct: 2 DSHSQKAWK-WWKKFGEKPICLAPMAEISDLSWRMLIRNHGVKVCWTGMLNAHQWSQGSG 60
Query: 122 LRQEILMSTPEDRPLIIQ 139
+ + + PED PLI Q
Sbjct: 61 YQNKFFNTCPEDHPLIAQ 78
>gi|116192117|ref|XP_001221871.1| hypothetical protein CHGG_05776 [Chaetomium globosum CBS 148.51]
gi|88181689|gb|EAQ89157.1| hypothetical protein CHGG_05776 [Chaetomium globosum CBS 148.51]
Length = 464
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 89/259 (34%), Positives = 127/259 (49%), Gaps = 65/259 (25%)
Query: 134 RPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFI 187
+P + R + LGSP++I+APMVD SE WR+LSR + L Y+PM A F
Sbjct: 21 KPKLHGRAFYESLGSPKYIVAPMVDQSEFAWRMLSRSFLPESEQSGLLAYSPMFHARLFS 80
Query: 188 ADKKLRQEILMST-PE------------DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDI 234
+K R + T P+ DRP +QFC ND + L AAK+A P+CD +D+
Sbjct: 81 ESQKYRDQHFQPTKPDCDKLYLDGNPAIDRPFFVQFCANDPQALLNAAKIAAPYCDAVDL 140
Query: 235 NIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARML 294
N+GCPQ +AK+GHYG++LQ+D L+ L+ L + + +PV+ KIRI + T++YA+ +
Sbjct: 141 NLGCPQGIAKKGHYGSFLQEDQDLIHQLIKILHENLDIPVTAKIRILETKEATLKYAQNV 200
Query: 295 ERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQT 354
R +L CLA T
Sbjct: 201 LRPTASIL----------------------------------------------TCLAAT 214
Query: 355 GVAGVMTAEGNLYNPALFT 373
G G+M+AEGNL NP F
Sbjct: 215 GADGIMSAEGNLSNPGFFA 233
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRY------GSHLCYTPMVSAHQFIADKKLRQEI 126
+ LGSP++I+APMVD SE WR+LSR + L Y+PM A F +K R +
Sbjct: 30 YESLGSPKYIVAPMVDQSEFAWRMLSRSFLPESEQSGLLAYSPMFHARLFSESQKYRDQH 89
Query: 127 LMSTPED 133
T D
Sbjct: 90 FQPTKPD 96
>gi|426195334|gb|EKV45264.1| hypothetical protein AGABI2DRAFT_208170 [Agaricus bisporus var.
bisporus H97]
Length = 316
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 153/287 (53%), Gaps = 18/287 (6%)
Query: 175 LCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDI 234
L T ++S +++ + L+ + + + P++ Q CGND + +A + + +C GID+
Sbjct: 2 LMSTKLLSDQEYL-ETHLKDLSTVVSGLENPVVAQLCGNDPDAIVQAGRKLQNYCQGIDL 60
Query: 235 NIGCPQMVAKRGHYGAYL--QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYAR 292
N+GCPQ +A+ GHYGAYL Q DW L+ ++VSS+ Q+ VPVS K R+ Q KT+E +
Sbjct: 61 NLGCPQGLARDGHYGAYLLGQSDWSLVESIVSSMAQSFTVPVSVKTRLCQPQVKTLELYQ 120
Query: 293 MLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLA 352
LE G L +HGRT+ R G A + +++ L+IP+I+NGN++ D+ LA
Sbjct: 121 RLEHCGASWLILHGRTISARRRRQGSADLTEVKRLKENLSIPIISNGNVRGHNDIWENLA 180
Query: 353 QTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYP--VRLQYARGHVFNMCHH 410
TG G+M E L NP +FT +++ EYL L QYP LQ + HV H
Sbjct: 181 FTGADGLMVGETLLGNPYVFTETLPDPVDISFEYLSLCHQYPGIASLQAIQTHV----RH 236
Query: 411 LLTLPEN-----SDVRLLVGKTNHIKDLRKAVDMLRERFIDYHEGRK 452
+ S R + T I+D+ V + ER+ GRK
Sbjct: 237 FIEFQCGRETWFSKFRTALSATRSIEDIEHLVYLKLERW----RGRK 279
>gi|395738851|ref|XP_003777160.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine(20a/20b)
synthase [NAD(P)+]-like [Pongo abelii]
Length = 325
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 143/277 (51%), Gaps = 14/277 (5%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + ++V +R V+
Sbjct: 90 ANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPEDDRDMVKQVRNQVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHG--------RTVDQRGMNTGLAS 320
P +S KI I+ D+ +TV+ R E G + VHG RT ++R
Sbjct: 150 TPGFSISIKIGIHDDLKRTVDLCRKAEATGVSWITVHGELLKKDISRTAEERHQPV---H 206
Query: 321 WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW 380
+E I +++ ++IPVIANG+I+ L + E TG GVM A G L NPA+F G
Sbjct: 207 YESIKIIKENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGYEETPL 266
Query: 381 ELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPEN 417
+ +++D+ + H+ M + + E
Sbjct: 267 KCIWDWVDIALELGTPYMCFHQHLMYMMEKITSRQEK 303
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQ 87
>gi|225717662|gb|ACO14677.1| tRNA-dihydrouridine synthase 4-like [Caligus clemensi]
Length = 308
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 140/263 (53%), Gaps = 13/263 (4%)
Query: 154 APMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP-EDRPLIIQFCG 212
APMV S+LP+R L YG+ + ++PM+ A F++ + R + P DRPLI+QF
Sbjct: 18 APMVRYSKLPFRRLILSYGADVAFSPMILADSFVSSPEARFNEFTTDPLRDRPLIVQFAS 77
Query: 213 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ- 271
+ AA+L PH +G+D+N GCPQ A R GA L ++++V S + Q
Sbjct: 78 KSVDDFVSAAQLVAPHAEGVDLNCGCPQGWAIREGIGAALLQRPEFISDVVRSTKNRTQH 137
Query: 272 -VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA 330
+ VS KIR+ +D +T + + +E AG + VHGRT DQ+ + E + V+++
Sbjct: 138 SLSVSVKIRLQKDHRRTWDLVKAVENAGADFITVHGRTKDQQSGDP--VDLEGVKYVKES 195
Query: 331 LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLV 390
L+IPV+ANG+I+ L + TGV GVM A G L NPA++ G E ++L
Sbjct: 196 LSIPVVANGDIKSLHEAHCVRELTGVDGVMAARGLLENPAMYAGYGITPKECVEDWL--- 252
Query: 391 AQYPVRLQYARGHVFNMCHHLLT 413
R+ G F HH L+
Sbjct: 253 -----RISLETGTPFQTFHHHLS 270
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 84 APMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP-EDRPLIIQ 139
APMV S+LP+R L YG+ + ++PM+ A F++ + R + P DRPLI+Q
Sbjct: 18 APMVRYSKLPFRRLILSYGADVAFSPMILADSFVSSPEARFNEFTTDPLRDRPLIVQ 74
>gi|71003213|ref|XP_756287.1| hypothetical protein UM00140.1 [Ustilago maydis 521]
gi|46096292|gb|EAK81525.1| hypothetical protein UM00140.1 [Ustilago maydis 521]
Length = 364
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 105/305 (34%), Positives = 152/305 (49%), Gaps = 46/305 (15%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP---- 201
L S + APMV S+L +RL + + G+ L +T M A + +D+ + + +L S
Sbjct: 9 LESLLYCAAPMVGQSDLAFRLQTVQNGATLTWTQMYLAPELSSDQYMLESLLKSLEMGSN 68
Query: 202 ---------------EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRG 246
+ P ++Q GN+ + L EAA+ P+ D ID+N+GCPQ A++G
Sbjct: 69 ATKNMARYRASPLHDQSAPQVVQLAGNNVQQLVEAARRVAPYADAIDLNLGCPQRHAEQG 128
Query: 247 HYGAYL--QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
HYGA L + +WPL+ +VS + QAV VP++ KIR+ +T + A ML AG L+ V
Sbjct: 129 HYGACLLPKQNWPLVAEIVSGMVQAVDVPITTKIRLPVPKEQTAQLAVMLAHAGSSLVTV 188
Query: 305 HGRTVDQRGMNTGLASWEHITAVRKALT--------------IPVIANGNIQCLADVEAC 350
H R GLA + + VR+AL V++NGN+QC DV
Sbjct: 189 HPRFASSARRRKGLADLDQVVKVREALQAQGLLRSAEQPHKDTAVVSNGNVQCWQDVVNN 248
Query: 351 LAQTGVAGVMTAEGNLYNPALFTGQTR--------PAWELASEYLDL---VAQYPVRLQY 399
L TG +GVM E L NPALF R A E+A EYLD Q+ L+
Sbjct: 249 LELTGASGVMVGETLLQNPALFRPALRDCEHARLPTAKEMAIEYLDFRDTYDQFESPLKV 308
Query: 400 ARGHV 404
A+ H+
Sbjct: 309 AKQHL 313
>gi|189239358|ref|XP_974445.2| PREDICTED: similar to tRNA-dihydrouridine synthase [Tribolium
castaneum]
Length = 401
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 91/250 (36%), Positives = 127/250 (50%), Gaps = 7/250 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+L +R L + Y LCYTPM+ A F K R + D PLI QF
Sbjct: 27 ICAPMVRYSKLQFRNLVKSYNCDLCYTPMILADSFCKSGKARANEFTTNMNDTPLITQFA 86
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
N + AA + P CDG+D+N GCPQ AK G + + ++ +LV R +
Sbjct: 87 ANKVYDFVGAAYMVSPFCDGVDLNCGCPQRWAKLQGLGCIMLEKPEVIYDLVKQCRNVIP 146
Query: 272 VP--VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK 329
P VS K+R+ +D+ ++VE R LE G L VHGRT DQ TG + E + +
Sbjct: 147 KPFTVSVKLRLQKDLRRSVEICRQLEHCGVSFLTVHGRTPDQL---TGEVNKEALNLIVG 203
Query: 330 ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDL 389
++ +PV+ANG ++ L D +T GVM A G L NP LFT + + +L++
Sbjct: 204 SVNVPVVANGGVKSLEDCLELQEKTNCKGVMVANGLLTNPTLFTESSVTTTDCIQRWLNI 263
Query: 390 VAQYPVRLQY 399
Y L Y
Sbjct: 264 C--YNTTLDY 271
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ-- 139
I APMV S+L +R L + Y LCYTPM+ A F K R + D PLI Q
Sbjct: 27 ICAPMVRYSKLQFRNLVKSYNCDLCYTPMILADSFCKSGKARANEFTTNMNDTPLITQFA 86
Query: 140 -RTIFPRLGSPRFILAPMVDASEL 162
++ +G+ ++++P D +L
Sbjct: 87 ANKVYDFVGAA-YMVSPFCDGVDL 109
>gi|290982534|ref|XP_002673985.1| predicted protein [Naegleria gruberi]
gi|284087572|gb|EFC41241.1| predicted protein [Naegleria gruberi]
Length = 427
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 134/250 (53%), Gaps = 10/250 (4%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +RLL R YG + YTPM+ + F +K R + D PL++QF
Sbjct: 127 VQAPMVRYSKLAFRLLCREYGCDVVYTPMIMSDCFHKSQKARDSDFTTHYYDSPLVVQFA 186
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL----QDDWPLLTNLVSSLR 267
N+ + + A +LA P+CDGID+N GCPQ + GA L Q + ++ +
Sbjct: 187 ANNPTDFSLACQLAAPYCDGIDLNCGCPQPYVMKESLGAALVTKPQKIFDMVHEANNKFI 246
Query: 268 QAVQVPVSCKIRIY-----QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
+ P+ KIR++ + KT+E AR +E AG + VHGRT QR NT + + +
Sbjct: 247 SGMSRPIGVKIRLHPEDDTLEFRKTIELARQIEMAGASWVTVHGRTHKQRTKNTKV-NPD 305
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWEL 382
+++ L +PV+ NG+I L D + +TG GVM+A G L NPALF+G +E
Sbjct: 306 GPKTIKQILNVPVMHNGDIFTLGDSDRFAKETGCDGVMSARGLLSNPALFSGYDYVPFEC 365
Query: 383 ASEYLDLVAQ 392
YL + Q
Sbjct: 366 IQRYLQIAIQ 375
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +RLL R YG + YTPM+ + F +K R + D PL++Q
Sbjct: 127 VQAPMVRYSKLAFRLLCREYGCDVVYTPMIMSDCFHKSQKARDSDFTTHYYDSPLVVQ 184
>gi|404497412|ref|YP_006721518.1| TIM barrel oxidoreductase NifR3 [Geobacter metallireducens GS-15]
gi|418066839|ref|ZP_12704196.1| TIM-barrel protein, nifR3 family [Geobacter metallireducens RCH3]
gi|78195013|gb|ABB32780.1| TIM barrel oxidoreductase NifR3 [Geobacter metallireducens GS-15]
gi|373559828|gb|EHP86110.1| TIM-barrel protein, nifR3 family [Geobacter metallireducens RCH3]
Length = 324
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 130/224 (58%), Gaps = 4/224 (1%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
ILAPM + LP+RLL+R G+ LC+T MVS + + + + E+L S PEDRPL IQ
Sbjct: 16 LILAPMAGITNLPFRLLAREEGASLCFTEMVSVNGLVREGRKTFELLRSVPEDRPLGIQL 75
Query: 211 CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G+D + L E A++ E H D IDIN+GCP G+ L + + ++ R+A
Sbjct: 76 FGDDPQLLAEGARMVEGHGDLIDINMGCPVKKVVGTGAGSALLREPAKVRAIIRETRRAT 135
Query: 271 QVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
++P++ KIR + ++ A++ E GC + +H R+ Q M G A W+ I ++
Sbjct: 136 RLPLTVKIRSGWACGEANFLDIAQIAEEEGCDAITLHPRSRSQ--MFEGHADWQQIAEMK 193
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
+++ IPVI +G++ ADV A LA+TG GVM A G L NP +F
Sbjct: 194 QSVKIPVIGSGDLFTAADVTAMLAETGCDGVMVARGALGNPWIF 237
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 104/235 (44%), Gaps = 35/235 (14%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
ILAPM + LP+RLL+R G+ LC+T MVS + + + + E+L S PEDRPL IQ
Sbjct: 16 LILAPMAGITNLPFRLLAREEGASLCFTEMVSVNGLVREGRKTFELLRSVPEDRPLGIQ- 74
Query: 141 TIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK--KLRQEILM 198
G +LA E L+ G + A + + K+R I
Sbjct: 75 ----LFGDDPQLLAEGARMVEGHGDLIDINMGCPVKKVVGTGAGSALLREPAKVRAIIRE 130
Query: 199 STPEDR-PLIIQF-----CGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAK--RGHYG 249
+ R PL ++ CG N + A++AE CD I ++ P+ ++ GH
Sbjct: 131 TRRATRLPLTVKIRSGWACGE--ANFLDIAQIAEEEGCDAITLH---PRSRSQMFEGHA- 184
Query: 250 AYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
DW ++ ++Q+V++PV ++ + T ML GC + V
Sbjct: 185 -----DW----QQIAEMKQSVKIPVIGSGDLFTAADVTA----MLAETGCDGVMV 226
>gi|221484010|gb|EEE22314.1| dihydrouridine synthase domain-containing protein, putative
[Toxoplasma gondii GT1]
Length = 608
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/312 (32%), Positives = 138/312 (44%), Gaps = 85/312 (27%)
Query: 147 GSPRFILAPMVDASELP-----------WRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ- 194
GSP +L P A LP +RLL RRYG L YTPM+ + F+ D K R
Sbjct: 88 GSPFPVLLPPATAFSLPRVRCCLVSVAVFRLLGRRYGVDLAYTPMLHSRLFLDDSKYRAL 147
Query: 195 --EILMSTPE-------------------------------------------------- 202
+ L S+P
Sbjct: 148 HWQTLRSSPSWTQASCSEEEDVQEEGEEEGEEEEEGEEGEEGEVSEGGRSQWTGDESQEF 207
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
D P+ +QFCG+ L AA+L E + +D+N GCPQ +A+RGHYGA+L ++ LL ++
Sbjct: 208 DEPVFVQFCGDSPATLLAAAQLVEDEVEAVDVNFGCPQGIARRGHYGAFLLNEPELLVDI 267
Query: 263 VSSLRQAVQVPVSCKIRIYQDVN---------------------KTVEYARMLERAGCQL 301
VS+L + ++ PV+CK+R N T+ E AGC
Sbjct: 268 VSTLHKHLKTPVTCKMRKVSPRNPRDALPRSEAALVLDEERRLQDTLRLCDAFEAAGCAC 327
Query: 302 LAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361
L +HGRT +++ G W I V++ L+IPVIANG ++ D CL TG VM+
Sbjct: 328 LCIHGRTKEEKAAFVGPCDWLAIRHVKQRLSIPVIANGAVETYEDALRCLEFTGADAVMS 387
Query: 362 AEGNLYNPALFT 373
AEG L NP LF
Sbjct: 388 AEGLLDNPMLFA 399
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 14/69 (20%)
Query: 77 GSPRFILAPMVDASELP-----------WRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ- 124
GSP +L P A LP +RLL RRYG L YTPM+ + F+ D K R
Sbjct: 88 GSPFPVLLPPATAFSLPRVRCCLVSVAVFRLLGRRYGVDLAYTPMLHSRLFLDDSKYRAL 147
Query: 125 --EILMSTP 131
+ L S+P
Sbjct: 148 HWQTLRSSP 156
>gi|149237573|ref|XP_001524663.1| tRNA-dihydrouridine synthase 4 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451260|gb|EDK45516.1| tRNA-dihydrouridine synthase 4 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 342
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/325 (31%), Positives = 169/325 (52%), Gaps = 14/325 (4%)
Query: 132 EDRPL-IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK 190
E+RP II+R G + PMV S+LP+R L R Y + YTPM+ A +F+ ++
Sbjct: 13 ENRPTEIIKRC--NAEGRRAHVAGPMVRYSKLPFRELCRFYNVDIIYTPMILAREFVRNE 70
Query: 191 KLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGA 250
R + +D +I+Q N+ ++ + ++ P+ DGI IN GCP R GA
Sbjct: 71 MARYSDFTTNDKDTCVIVQVGVNNVEDFMKFIEMIHPYVDGIGINCGCPIRDQIREGIGA 130
Query: 251 YLQDDWPLLTNLVSSLRQ--AVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308
L + L+ ++++ ++ + + KIRI+ D+++T+E+ + +E AG ++ +HGRT
Sbjct: 131 ALMSEPDLVAEMIATAKKQYGDSICIDTKIRIHNDLSETIEFVKKVEAAGTDIITIHGRT 190
Query: 309 VDQRGMNTGLASWEHITAVRKALT-IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367
R ++ + + I VR +T +PVIANG+ L D E TGV GVM+A G L
Sbjct: 191 KTTR--SSIPVNLDAIKLVRSHITKVPVIANGDCFTLEDCERIADYTGVNGVMSARGILA 248
Query: 368 NPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT 427
NPALF G + W ++ L Y + + ++ HV M ++L +P R ++ +
Sbjct: 249 NPALFQGFNQTPWSAVEVFMHLTTCYGLPYKLSQHHVAQMMENML-IP-----RKVIKEV 302
Query: 428 NHIKDLRKAVDMLRERFIDYHEGRK 452
N K + +D L + F +G K
Sbjct: 303 NESKTMIDMIDTLDKYFYLKRKGEK 327
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
+ PMV S+LP+R L R Y + YTPM+ A +F+ ++ R + +D +I+Q
Sbjct: 32 VAGPMVRYSKLPFRELCRFYNVDIIYTPMILAREFVRNEMARYSDFTTNDKDTCVIVQVG 91
Query: 142 IFPRLGSPRFI--LAPMVDA 159
+ +FI + P VD
Sbjct: 92 VNNVEDFMKFIEMIHPYVDG 111
>gi|308485393|ref|XP_003104895.1| hypothetical protein CRE_24419 [Caenorhabditis remanei]
gi|308257216|gb|EFP01169.1| hypothetical protein CRE_24419 [Caenorhabditis remanei]
Length = 304
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/229 (38%), Positives = 125/229 (54%), Gaps = 6/229 (2%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
P+F LAPMV S+L +R L R Y +CYTPM+ A FI +K R L D PLI+
Sbjct: 13 PKFYLAPMVRYSKLAFRQLVRLYDVDVCYTPMIYAKNFIESEKCRNSELSICERDSPLIV 72
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
QF +D L EAA++ G+D+N GCP+ + +G+ L + LL +++ R
Sbjct: 73 QFATDDPIVLAEAAEMVYGCSTGVDVNCGCPKHDVRSKGFGSALLNKPELLADMIRQTRA 132
Query: 269 AV---QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+ + VS KIR+ D+ +TV+ R E AG L VHGRT Q + + I
Sbjct: 133 RISDTEFSVSLKIRVNSDIERTVDLCRKAESAGVTHLTVHGRTPSQHAEPIDIQA---IR 189
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG 374
V++++++PVIANG I + QTGV G+M A G L NPALF G
Sbjct: 190 IVKESVSVPVIANGGITTREEALFLAEQTGVDGIMAANGLLDNPALFAG 238
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 36/61 (59%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P+F LAPMV S+L +R L R Y +CYTPM+ A FI +K R L D PLI+
Sbjct: 13 PKFYLAPMVRYSKLAFRQLVRLYDVDVCYTPMIYAKNFIESEKCRNSELSICERDSPLIV 72
Query: 139 Q 139
Q
Sbjct: 73 Q 73
>gi|328713887|ref|XP_001951826.2| PREDICTED: tRNA-dihydrouridine synthase 4-like [Acyrthosiphon
pisum]
Length = 350
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 136/263 (51%), Gaps = 8/263 (3%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S L +R L R Y LC+TPM+ A ++ K R + +DRPLI+QF
Sbjct: 20 ICAPMVRYSRLQFRKLIRMYECDLCFTPMIMADCYVKSAKARAHEFQTDTDDRPLIVQFG 79
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV- 270
N+S + A+ L P+CDG+D+N GCPQ A YGA L + ++ + V LR +
Sbjct: 80 ANNSSDFVNASNLIIPYCDGVDLNCGCPQRWALNEGYGAQLLKNPEIIKDCVRQLRNHLP 139
Query: 271 -QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK 329
+S K+R+ D K+V+ + +E G + VHGRT Q+ E + + +
Sbjct: 140 TNKTISVKLRLLDDHRKSVDLCQQIEATGVSFITVHGRTALQKNEPI---DQECLKLINE 196
Query: 330 ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDL 389
++++PVI NG+I+ L+D TG G+M+A G L+NP LF G ++L++
Sbjct: 197 SVSVPVILNGDIKNLSDAITMQEYTGCRGMMSARGILHNPGLFAGYQTTPLSAVQDWLNI 256
Query: 390 VAQYPVRLQYARGHVFNMCHHLL 412
+ H+ MC LL
Sbjct: 257 ---KHTNFLWFHHHLVFMCERLL 276
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 99/236 (41%), Gaps = 48/236 (20%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
I APMV S L +R L R Y LC+TPM+ A ++ K R + +DRPLI+Q
Sbjct: 20 ICAPMVRYSRLQFRKLIRMYECDLCFTPMIMADCYVKSAKARAHEFQTDTDDRPLIVQ-- 77
Query: 142 IFPRLGSPRFILA-----PMVDASEL----PWR-LLSRRYGSHLCYTPMVSAHQFIAD-- 189
F S F+ A P D +L P R L+ YG+ L P + I D
Sbjct: 78 -FGANNSSDFVNASNLIIPYCDGVDLNCGCPQRWALNEGYGAQLLKNP-----EIIKDCV 131
Query: 190 KKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAK----- 244
++LR + P ++ + ++ +L + H +D+ C Q+ A
Sbjct: 132 RQLRNHL----PTNKTISVKL------------RLLDDHRKSVDL---CQQIEATGVSFI 172
Query: 245 RGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQ 300
H LQ + P+ + + ++V VPV + D+ + M E GC+
Sbjct: 173 TVHGRTALQKNEPIDQECLKLINESVSVPVI----LNGDIKNLSDAITMQEYTGCR 224
>gi|347968560|ref|XP_312125.4| AGAP002791-PA [Anopheles gambiae str. PEST]
gi|333467945|gb|EAA07861.4| AGAP002791-PA [Anopheles gambiae str. PEST]
Length = 412
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 149/290 (51%), Gaps = 11/290 (3%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+L +R L R YG+ L +T M+ A F +K R + ED PLI QF
Sbjct: 23 ICAPMVRYSKLEFRHLVRSYGTDLAFTSMIMADSFCKSEKARLNEFTTNEEDTPLIAQFA 82
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV- 270
N++ + A+++ P+ DG+D+N GCPQ A YG+ L L+ +++ ++R+ +
Sbjct: 83 ANNTIDFLSASEMVYPYVDGVDLNCGCPQRWAMAEGYGSALLKTPELIADMLGTVRRNMP 142
Query: 271 -QVPVSCKIRIYQ--DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
VS K+R+ D +T++ R LE G L VHGRT + M + + +
Sbjct: 143 STFSVSVKVRLLSSTDHKRTIDMCRQLEATGITFLTVHGRTAPE--MTKVPVHKDALQEI 200
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYL 387
++++ IP++ANG+I L D E QT GVMTA G L NPALF G + E +L
Sbjct: 201 KQSIGIPMVANGDIFTLDDAEQMYLQTKCDGVMTARGILSNPALFAGHSSTPVECVKRWL 260
Query: 388 DLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAV 437
++ Q + Y H HH + E+ + L + N++ ++ V
Sbjct: 261 NICQQADTDITYQCMH-----HHFSFMTESLLTKRLRYELNNLSKEKQKV 305
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 67/144 (46%), Gaps = 26/144 (18%)
Query: 56 TNVVPKDCHSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQ 115
TN+ +D SS A + + + I APMV S+L +R L R YG+ L +T M+ A
Sbjct: 5 TNI--RDLFSSAAERNTFLK------ICAPMVRYSKLEFRHLVRSYGTDLAFTSMIMADS 56
Query: 116 FIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILA-----PMVDASEL----PWR- 165
F +K R + ED PLI Q F + F+ A P VD +L P R
Sbjct: 57 FCKSEKARLNEFTTNEEDTPLIAQ---FAANNTIDFLSASEMVYPYVDGVDLNCGCPQRW 113
Query: 166 LLSRRYGSHLCYTPMVSAHQFIAD 189
++ YGS L TP + IAD
Sbjct: 114 AMAEGYGSALLKTP-----ELIAD 132
>gi|225712694|gb|ACO12193.1| tRNA-dihydrouridine synthase 4-like [Lepeophtheirus salmonis]
Length = 301
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 133/236 (56%), Gaps = 8/236 (3%)
Query: 143 FPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP- 201
F R G + APMV S+LP+R L +G+ + ++PM+ A F++ + R S P
Sbjct: 3 FFREGELTKMGAPMVRYSKLPFRRLILSHGADVAFSPMILADSFVSSSEARDNEFTSDPK 62
Query: 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTN 261
ED PL++QF N ++ +A+ L P+ +G+D+N GCPQ A + GA L + +
Sbjct: 63 EDHPLVVQFAANKVQDFVDASVLVAPYAEGVDLNCGCPQSWALKEGIGASLLQKPEFICD 122
Query: 262 LVSSLRQAVQVP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL 318
+V S + + P VS KIR+++D +T++ + +E +G + VHGRT DQ L
Sbjct: 123 VVKSTKSVIPYPDFSVSVKIRLHRDKRRTIDLCK-VENSGVDFITVHGRTKDQHSDPVDL 181
Query: 319 ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG 374
E + ++ AL+IPV+ANG+I+ L D TGV GVM A G L NPA++ G
Sbjct: 182 ---EGVKMIKDALSIPVVANGDIKSLDDAYRVREVTGVDGVMAARGLLENPAMYAG 234
Score = 47.4 bits (111), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 66 STARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE 125
S R T++G APMV S+LP+R L +G+ + ++PM+ A F++ + R
Sbjct: 2 SFFREGELTKMG------APMVRYSKLPFRRLILSHGADVAFSPMILADSFVSSSEARDN 55
Query: 126 ILMSTP-EDRPLIIQ 139
S P ED PL++Q
Sbjct: 56 EFTSDPKEDHPLVVQ 70
>gi|347528184|ref|YP_004834931.1| putative tRNA-dihydrouridine synthase [Sphingobium sp. SYK-6]
gi|345136865|dbj|BAK66474.1| putative tRNA-dihydrouridine synthase [Sphingobium sp. SYK-6]
Length = 342
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 108/313 (34%), Positives = 154/313 (49%), Gaps = 23/313 (7%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
ILAPM +++P+R L RRYGS L T M+++ I + + + P + P+ +Q
Sbjct: 18 VILAPMTGVTDMPFRTLVRRYGSGLNVTEMIASPAMIRETRQSLQKAAWAPAEEPVSLQL 77
Query: 211 CGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G + EAAKL A+ IDIN+GCP G G+ L D PL +L+ + +A
Sbjct: 78 AGCQPAEMAEAAKLNADRGAAIIDINMGCPVKKVVNGDAGSALMRDLPLAASLIRATVEA 137
Query: 270 VQVPVSCKIRIY--QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
V VPV+ K+R+ D E AR+ E G +++ VHGRT +Q M G A W + V
Sbjct: 138 VDVPVTVKMRMGWCHDNLNAPELARIAEDLGARMITVHGRTRNQ--MYKGSADWAFVRKV 195
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP--------ALFTGQTRPA 379
+ A+ IPVI NG+I + D LAQ+G GVM G P AL TG+ R
Sbjct: 196 KDAVGIPVIVNGDICSIEDARTALAQSGADGVMIGRGAYGRPWLLGQVMQALATGEHRSD 255
Query: 380 WELASEYLDLVAQYPVRLQ-YARGHVFNMCHHLL-----TLPENSDVRLLVGKTNHIKDL 433
+LA +Y + Y L Y NM L LP +++ R K N + D
Sbjct: 256 PDLAEQYAMITEHYRAMLDHYGEMTGVNMARKHLGWYTRGLPGSAEFR---NKVNQVPDA 312
Query: 434 RKAVDMLRERFID 446
+ +DML RF +
Sbjct: 313 ARVLDML-ARFYE 324
Score = 42.4 bits (98), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 75 QLGSPRF----ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
Q+G R ILAPM +++P+R L RRYGS L T M+++ I + + +
Sbjct: 8 QIGPVRIDMPVILAPMTGVTDMPFRTLVRRYGSGLNVTEMIASPAMIRETRQSLQKAAWA 67
Query: 131 PEDRPLIIQ 139
P + P+ +Q
Sbjct: 68 PAEEPVSLQ 76
>gi|156120523|ref|NP_001095407.1| tRNA-dihydrouridine synthase 4-like [Bos taurus]
gi|151555764|gb|AAI49230.1| DUS4L protein [Bos taurus]
gi|296488502|tpg|DAA30615.1| TPA: dihydrouridine synthase 4-like [Bos taurus]
Length = 238
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 124/210 (59%), Gaps = 6/210 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 ICAPMVRYSKLSFRTLVRKYDCDLCYTPMIVAADFVRSAKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 90 ANDARLLSDAARIVCPYANGIDINCGCPQRWALAEGYGACLINKPELVRDMVKQVRNQVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +TV+ R E G + VHGRTV++R +E I ++
Sbjct: 150 NPRFSVSIKIRIHDDLTRTVDLCRKAEATGVSWITVHGRTVEERHQP---VHYEAIKIIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAG 358
++++IP++ANG+I+ L + E TG G
Sbjct: 207 ESMSIPIVANGDIRSLKEAENVWHTTGTDG 236
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
I APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 ICAPMVRYSKLSFRTLVRKYDCDLCYTPMIVAADFVRSAKARDSEFTTNQGDCPLIVQ 87
>gi|328773713|gb|EGF83750.1| hypothetical protein BATDEDRAFT_21188 [Batrachochytrium
dendrobatidis JAM81]
Length = 327
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 99/277 (35%), Positives = 147/277 (53%), Gaps = 19/277 (6%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ-EILMSTPEDRPLIIQF 210
I APMV S+L +R L R Y L YTPM+ + F + R+ E D P+I+QF
Sbjct: 28 ICAPMVRYSKLAFRELVRGYNVDLAYTPMILSDVFKHSQISRETEFRTHQITDDPVIVQF 87
Query: 211 CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV------- 263
++ +L +AA+L + +G+D+N GCPQ A G+YL + L+ ++V
Sbjct: 88 AASNPTDLADAAELVARYTNGVDLNCGCPQKWAISEGIGSYLMEHPELVRDMVKQVKSRT 147
Query: 264 SSLRQA--VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
SS++ A P S KIRI+ D+ KTVE+ R E G + VHGRT Q+ NT +
Sbjct: 148 SSVKMANGTSFPCSIKIRIHSDLKKTVEFVRRAESIGVDWITVHGRTRKQK--NTEPLNM 205
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWE 381
+ I ++++ +PV ANGN+ L D + + +T V GVM A G L NPALF+G +E
Sbjct: 206 DGIRIAKESVGVPVFANGNVLTLGDADRLVEETRVDGVMAARGLLENPALFSGYDTTPFE 265
Query: 382 LASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENS 418
++L L + Y H F HHL+ + + S
Sbjct: 266 CVEKFLKL------SIGYGSTH-FITHHHLMYMLDAS 295
>gi|430813401|emb|CCJ29241.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 313
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 95/317 (29%), Positives = 160/317 (50%), Gaps = 33/317 (10%)
Query: 132 EDRPL-IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK 190
ED PL + + R P +I PMV S+LP+R L R Y L YTPM+ A +
Sbjct: 16 EDHPLKLFSMAKYER--RPLYISGPMVRYSKLPFRSLVRNYSVDLAYTPMMVAKE----- 68
Query: 191 KLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGA 250
PL+ QF ND L A ++ + DGI +N GCPQ A +G GA
Sbjct: 69 --------------PLVSQFASNDPVVLGRAVEMISNYVDGISLNCGCPQSWACQGGLGA 114
Query: 251 YLQDDWPLLTNLVSSLRQ--AVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308
+L D + ++ ++++ ++ KIRI+ D+ KTV++A+ ++ AG + VHGR
Sbjct: 115 HLMHDPQNVCEMIKAVKERCGKRMCTEVKIRIHSDLRKTVDWAQKVQAAGVDYMVVHGRR 174
Query: 309 VDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368
+Q+ ++ + + I ++++LTIPV+ANG++ L+D T V G+M++ G L+N
Sbjct: 175 RNQK--SSEPVNLDAIKLIKESLTIPVVANGDVFTLSDANCIAKYTNVNGIMSSRGILFN 232
Query: 369 PALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTN 428
PALF+G W +++ Y + + H+ M +L ++ D+ +G
Sbjct: 233 PALFSGFDSCPWSAIERFIEYSLSYGLNFHLFQQHILKMMGKILNKKDSVDLSKQIG--- 289
Query: 429 HIKDLRKAVDMLRERFI 445
+ +D + ERF+
Sbjct: 290 ----IVGILDWIDERFV 302
>gi|402584035|gb|EJW77977.1| DUS4L protein [Wuchereria bancrofti]
Length = 275
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 91/272 (33%), Positives = 140/272 (51%), Gaps = 19/272 (6%)
Query: 166 LLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLA 225
+L R Y + +TPM+ A FIA ++ R + P D P ++QF N+ + + AA
Sbjct: 1 MLVRLYSVDVAFTPMIYAKHFIASEQCRSAEFTTCPGDNPTVVQFASNEPEEFSTAAMFI 60
Query: 226 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVP---VSCKIRIYQ 282
+C GID+N GCPQ + YG+ L D + ++VS+ R+ + P +S KIR+
Sbjct: 61 SRYCRGIDLNCGCPQRDVMKEGYGSSLLTDPVRIADIVSTTRRRISKPDFTISIKIRLKP 120
Query: 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQ 342
+ T+E R ERAG + VHGRT +QR + A ++ I ++ +L++PVIANGNI+
Sbjct: 121 NRQLTLETCRQAERAGVSFVTVHGRTPEQR---SEPADYDMIKLIKSSLSVPVIANGNIK 177
Query: 343 CLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARG 402
+ TGV GVM+A G L NPA+F G T + +++ VRL G
Sbjct: 178 SYEQALQVVKYTGVDGVMSANGLLENPAMFAGYTSTPKQCVADW--------VRLTTEHG 229
Query: 403 HVFNMCHHLLTLPENSDV-----RLLVGKTNH 429
F++ H L S + + G +NH
Sbjct: 230 CPFDLFHQQLMFMLRSSLTSRQRTMFNGLSNH 261
>gi|426227585|ref|XP_004007898.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Ovis aries]
Length = 238
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 124/210 (59%), Gaps = 6/210 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLSFRTLVRKYDCDLCYTPMIVAADFVRSAKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 90 ANDARLLSDAARIVCPYANGIDINCGCPQRWALAEGYGACLINKPELVRDMVKQVRNQVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +TV+ R E G + VHGRTV++R +E I ++
Sbjct: 150 NPRFSVSIKIRIHDDLTRTVDLCRKAEATGVSWITVHGRTVEERHQPV---HYEAIKIIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAG 358
++++IP++ANG+I+ L + E TG G
Sbjct: 207 ESMSIPIVANGDIRSLKEAENVWHITGTDG 236
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 VCAPMVRYSKLSFRTLVRKYDCDLCYTPMIVAADFVRSAKARDSEFTTNQGDCPLIVQ 87
>gi|45190681|ref|NP_984935.1| AER075Wp [Ashbya gossypii ATCC 10895]
gi|44983660|gb|AAS52759.1| AER075Wp [Ashbya gossypii ATCC 10895]
gi|374108158|gb|AEY97065.1| FAER075Wp [Ashbya gossypii FDAG1]
Length = 352
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 156/323 (48%), Gaps = 16/323 (4%)
Query: 130 TPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD 189
TPE+ PL I +T P I PMV S+LP+R L R + + Y+PM+ A +F+ +
Sbjct: 15 TPENDPLHIIKTRRITHNRPATIAGPMVRYSKLPFRQLCRHFNVDIVYSPMILAREFVRN 74
Query: 190 KKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 249
+ R + D PLI+Q N+ +L ++ P+CDGI IN GCP R G
Sbjct: 75 EHARMADFTTNSRDTPLIVQVGVNNVVDLLRFVEMVSPYCDGIGINCGCPIREQVREGIG 134
Query: 250 AYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307
+ L + PLL +V ++++ + V + KIRI+ D+ +TV L AG + +HGR
Sbjct: 135 SALIYNQPLLCEMVRAVKEKYKDTVRLETKIRIHDDLAQTVTLCNALASAGVDWITIHGR 194
Query: 308 TVDQR-GMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366
T R + +A+ +I +P++ANG+ L D A+TG G+M G L
Sbjct: 195 TRTTRSSVPANIAAIRYIKEHITDKELPIVANGDCFTLDDCHRIAAETGADGIMAVRGLL 254
Query: 367 YNPALFTGQTRPAW---ELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDV-RL 422
NPALF+G W EL Y P +L + HHL + EN +
Sbjct: 255 ANPALFSGYKTCPWHAVELLWHYAMEFGTLPYQL---------LQHHLHCMLENMGADKT 305
Query: 423 LVGKTNHIKDLRKAVDMLRERFI 445
L+ + IK+ + +D E F+
Sbjct: 306 LLKQMMDIKNFCELIDWFDEHFV 328
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P I PMV S+LP+R L R + + Y+PM+ A +F+ ++ R + D PLI+
Sbjct: 34 PATIAGPMVRYSKLPFRQLCRHFNVDIVYSPMILAREFVRNEHARMADFTTNSRDTPLIV 93
Query: 139 QRTIFPRLGSPRFI--LAPMVDA 159
Q + + RF+ ++P D
Sbjct: 94 QVGVNNVVDLLRFVEMVSPYCDG 116
>gi|388852453|emb|CCF53855.1| related to tRNA dihydrouridine synthase [Ustilago hordei]
Length = 366
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/313 (33%), Positives = 149/313 (47%), Gaps = 50/313 (15%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS------ 199
L S + APMV S+LP+RL + R G+ +T M A +D+ + + S
Sbjct: 9 LESLLYCAAPMVGQSDLPFRLQTVRNGATSTWTQMYFASDLNSDRDMLDTLCKSLVLGRD 68
Query: 200 -------------TPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRG 246
T + P I+Q GND + L EAA+ P D ID+N+GCPQ A++G
Sbjct: 69 ATENTIRGSTHPMTGQSAPQIVQLAGNDVQQLVEAARKVAPFADAIDLNLGCPQRHAEQG 128
Query: 247 HYGAYL--QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
HYGAYL + +WPL+ +VS L QAV +P++ KIR+ +T + A +L AG L+ V
Sbjct: 129 HYGAYLLPKQNWPLIAKMVSGLVQAVDIPITTKIRLTVPKEQTPQLAVILAHAGSSLVTV 188
Query: 305 HGRTVDQRGMNTGLASWEHITAVRKAL--------------TIPVIANGNIQCLADVEAC 350
H R GLA + + VR+AL V++NGN++C D
Sbjct: 189 HPRFASAVRRRKGLADLDQVVQVRQALQSEGLLRNAEHSEGETAVVSNGNVRCWDDAVTN 248
Query: 351 LAQTGVAGVMTAEGNLYNPALF-----------TGQTRPAWELASEYL---DLVAQYPVR 396
T +GVM E L NPALF A + A EYL DL ++
Sbjct: 249 FHTTRASGVMVGETLLENPALFRPSLSEADRIGGSNELSAMDKAREYLALRDLYEEFESP 308
Query: 397 LQYARGHVFN-MC 408
L+ A+ H+ + MC
Sbjct: 309 LKVAKQHIQSIMC 321
>gi|170057436|ref|XP_001864482.1| tRNA-dihydrouridine synthase [Culex quinquefasciatus]
gi|167876880|gb|EDS40263.1| tRNA-dihydrouridine synthase [Culex quinquefasciatus]
Length = 378
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 156/299 (52%), Gaps = 23/299 (7%)
Query: 156 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDS 215
+ + ++L +R L R + + L ++ M+ A F +K R + +D P+I+QF N++
Sbjct: 8 LFNVTKLEFRNLVRTFDTDLTFSSMIMADSFCHSEKARLNEFTTNKDDTPMIVQFAANNT 67
Query: 216 KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVP 273
+ AA++ P+ DG+D+N GCPQ A + YG+ L L+ ++++++R+ +
Sbjct: 68 IDFLSAAEMVYPYSDGVDLNCGCPQRWAMQDGYGSALLKTPELIADMLATVRRNLPCSFS 127
Query: 274 VSCKIRIYQ-DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL-ASWEHITAVRKAL 331
VS K+R+ Q + TV+ R LE G L VHGRT + T + + + + ++ +L
Sbjct: 128 VSVKVRLLQKSLAATVDMCRQLEACGITFLTVHGRTAADK---TNVPVNKDALKEIKASL 184
Query: 332 TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVA 391
+IP++ANG+I L D + TG GVM+A G L NP L+ G + E +LD+ A
Sbjct: 185 SIPMVANGDIFSLQDADEMHRITGCDGVMSARGILSNPGLYAGHRQTPRECIQRWLDITA 244
Query: 392 QYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHI------KDLRKAVDMLRERF 444
Q + Y H HHL + E+ ++ KT + KD R VD LRE F
Sbjct: 245 QADTDITYQAMH-----HHLSFMAES-----MLSKTQRVTFNGLSKDKRLVVDFLREHF 293
>gi|195484353|ref|XP_002090658.1| GE13230 [Drosophila yakuba]
gi|194176759|gb|EDW90370.1| GE13230 [Drosophila yakuba]
Length = 395
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 157/310 (50%), Gaps = 20/310 (6%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R G L +TPM+ + +K RQ + +D+PLI QF
Sbjct: 26 VSAPMVRYSKLEFRRLVRLNGVQLAFTPMMISDSINNSEKARQNEFSTGADDQPLIAQFA 85
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV- 270
D +A+L P+ DGID+N GCPQ A YG + L+ +V +R+A+
Sbjct: 86 AKDPTEFVTSAQLIYPYVDGIDLNCGCPQSWAMAKGYGCGMLRQPELVRQVVQEVRRALP 145
Query: 271 -QVPVSCKIRIY---QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
VS K+R+ Q + +T++ AR LE+AG L +HGRT Q+ L +
Sbjct: 146 ADFSVSVKMRLLGGEQSLERTIDLARQLEQAGVTFLTLHGRTPAQKHSKDTL-DIPAMAE 204
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT-----GQTRPAWE 381
VRK+L IP+I NGN++ D QTG AGVM A G L NPALF +T P
Sbjct: 205 VRKSLQIPLIVNGNVESYRDACDMHDQTGAAGVMAARGLLANPALFNSIYPDAKTTP-LS 263
Query: 382 LASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDV-RLLVGKTNHIKDLRKAVDML 440
++LD+ + L +F HH LT ++ + R L + N + + VD L
Sbjct: 264 CVQQWLDIASAAGNNL------LFQCFHHHLTFMWSAQIKRDLRVQFNSLGSKEQVVDFL 317
Query: 441 RERF-IDYHE 449
+E + ++Y E
Sbjct: 318 KEHYNLEYSE 327
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 22/139 (15%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
+ APMV S+L +R L R G L +TPM+ + +K RQ + +D+PLI Q
Sbjct: 26 VSAPMVRYSKLEFRRLVRLNGVQLAFTPMMISDSINNSEKARQNEFSTGADDQPLIAQ-- 83
Query: 142 IFPRLGSPRFILA-----PMVDASEL------PWRLLSRRYGSHLCYTPMVSAHQFIADK 190
F F+ + P VD +L W +++ YG + P + +
Sbjct: 84 -FAAKDPTEFVTSAQLIYPYVDGIDLNCGCPQSW-AMAKGYGCGMLRQPELV-------R 134
Query: 191 KLRQEILMSTPEDRPLIIQ 209
++ QE+ + P D + ++
Sbjct: 135 QVVQEVRRALPADFSVSVK 153
>gi|440635483|gb|ELR05402.1| hypothetical protein GMDG_07385 [Geomyces destructans 20631-21]
Length = 343
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/270 (32%), Positives = 139/270 (51%), Gaps = 11/270 (4%)
Query: 147 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE--ILMSTPEDR 204
G P + APMV S+L +R +YG LC+TPM+ A +F R L +P
Sbjct: 34 GRPLYTSAPMVRYSKLAFRQTVHKYGVDLCWTPMILAKEFNRSVFARDSDFTLPPSPTSV 93
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
P I+QF N A P G+D+N GCPQ A GA L + L+ ++V
Sbjct: 94 PTILQFGANSPLEFARATSTLAPFVSGVDLNCGCPQSWACAECLGAALMNKRELVADIVK 153
Query: 265 SLRQAV-------QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
+ + Q VS KIRI++D+ +T+++ + ++ AG L +HGRT QR ++
Sbjct: 154 EAKATLKRDGYEGQRTVSVKIRIHKDLRQTIDFIKTVQDAGVDFLTIHGRTKSQR--SSE 211
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
+ E ++ +R +T+P+IANG++ LA + A+TG+ GVM+A L NPALF G
Sbjct: 212 PVNTEALSLLRPHVTVPLIANGDVSTLAIASSIAAETGIDGVMSARDILANPALFAGHDA 271
Query: 378 PAWELASEYLDLVAQYPVRLQYARGHVFNM 407
WE +++ V + P+ + H+ M
Sbjct: 272 CPWEAVEHFMNRVVRAPIPFKLVLHHLSQM 301
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 71 DAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE--ILM 128
D + G P + APMV S+L +R +YG LC+TPM+ A +F R L
Sbjct: 28 DIAREQGRPLYTSAPMVRYSKLAFRQTVHKYGVDLCWTPMILAKEFNRSVFARDSDFTLP 87
Query: 129 STPEDRPLIIQRTI-----FPRLGSPRFILAPMVDASEL 162
+P P I+Q F R S LAP V +L
Sbjct: 88 PSPTSVPTILQFGANSPLEFARATS---TLAPFVSGVDL 123
>gi|374587606|ref|ZP_09660698.1| TIM-barrel protein, nifR3 family [Leptonema illini DSM 21528]
gi|373876467|gb|EHQ08461.1| TIM-barrel protein, nifR3 family [Leptonema illini DSM 21528]
Length = 326
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 139/241 (57%), Gaps = 8/241 (3%)
Query: 153 LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCG 212
LAPM S++P+R + RR+GS L YT VS + + ++L ++RP+I Q G
Sbjct: 11 LAPMAGYSDMPFRRICRRFGSALSYTEFVSTDAVVRENVRTLQMLRFAEDERPVIFQIFG 70
Query: 213 NDSKNLTEAA-KLAEPHCDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
D + EAA +L DGID+N+GC VA +G A LQ+ + ++ ++ + +
Sbjct: 71 YDIDTIVEAALRLEVLRPDGIDLNLGCSVPKVAHKGSGAALLQNPEKIGV-IIEAMVKRL 129
Query: 271 QVPVSCKIRI-YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK 329
+VPVS K+RI + D ++ V+ AR +E AG +LAVHGRT DQR TG A W I A+R+
Sbjct: 130 RVPVSAKMRIGWSDTDQAVDIARRIEDAGASMLAVHGRTADQR--YTGRADWSVIGAMRE 187
Query: 330 ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRP--AWELASEYL 387
A+ IP++ NG+I+ AD E + + GV GV+ NP +F P A EL+S +
Sbjct: 188 AVKIPLLGNGDIESRADAEEKMRRYGVDGVLIGRAAHGNPWIFRSAANPVTAQELSSVFA 247
Query: 388 D 388
+
Sbjct: 248 E 248
Score = 45.8 bits (107), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 83 LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
LAPM S++P+R + RR+GS L YT VS + + ++L ++RP+I Q
Sbjct: 11 LAPMAGYSDMPFRRICRRFGSALSYTEFVSTDAVVRENVRTLQMLRFAEDERPVIFQ 67
>gi|409076990|gb|EKM77358.1| hypothetical protein AGABI1DRAFT_77367 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 317
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 152/288 (52%), Gaps = 19/288 (6%)
Query: 175 LCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGI-D 233
L T ++S +++ + L+ + + + P++ Q CGND + +A + + +C GI D
Sbjct: 2 LMSTKLLSDQEYL-ETHLKDLSTVVSGLENPVVAQLCGNDPDAIVQAGRKLQNYCQGIVD 60
Query: 234 INIGCPQMVAKRGHYGAYL--QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYA 291
+N+GCPQ +A+ GHYGAYL Q DW L+ +VSS+ Q+ VPVS K R+ Q KT+E
Sbjct: 61 LNLGCPQGLARDGHYGAYLLGQSDWSLVELIVSSMAQSFTVPVSVKTRLCQPQVKTLELY 120
Query: 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACL 351
+ LE G L +HGRT+ R G A + +++ L+IP+I+NGN++ D+ L
Sbjct: 121 QRLEHCGASWLILHGRTISARRRRQGSADLTEVKRLKENLSIPIISNGNVRGHNDIWENL 180
Query: 352 AQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYP--VRLQYARGHVFNMCH 409
A TG G+M E L NP +FT +++ EYL L QYP LQ + H+
Sbjct: 181 AFTGADGLMVGETLLGNPCVFTETLPDPVDISFEYLSLCHQYPGIASLQAIQTHI----R 236
Query: 410 HLLTLPENSDV-----RLLVGKTNHIKDLRKAVDMLRERFIDYHEGRK 452
H + + R + T I+D+ V + ER+ GRK
Sbjct: 237 HFIEFQCGRETWFNKFRTALSATRSIEDIEHLVYLKLERW----RGRK 280
>gi|6323437|ref|NP_013509.1| Dus4p [Saccharomyces cerevisiae S288c]
gi|2833204|sp|Q06063.1|DUS4_YEAST RecName: Full=tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+];
AltName: Full=tRNA-dihydrouridine synthase 4
gi|625099|gb|AAB82341.1| Ylr405wp [Saccharomyces cerevisiae]
gi|45271062|gb|AAS56912.1| YLR405W [Saccharomyces cerevisiae]
gi|285813808|tpg|DAA09704.1| TPA: Dus4p [Saccharomyces cerevisiae S288c]
gi|392297906|gb|EIW09005.1| Dus4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 367
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 160/320 (50%), Gaps = 12/320 (3%)
Query: 130 TPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD 189
T E PL I +T G P I PMV S+LP+R L R Y + Y+PM+ A +++ +
Sbjct: 20 TEETDPLHIIKTRQKTHGRPVTIAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRN 79
Query: 190 KKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 249
+ R L + ED PLI+Q N+ +L + ++ P+CDGI IN GCP R G
Sbjct: 80 EHARISDLSTNNEDTPLIVQVGVNNVADLLKFVEMVAPYCDGIGINCGCPIKEQIREGIG 139
Query: 250 AYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307
L + LL ++V +++ ++ + KIRI++ +++TVE R L AG + +HGR
Sbjct: 140 CALIYNSDLLCSMVHAVKDKYGDKLRIETKIRIHEALDETVELCRKLCDAGVDWITIHGR 199
Query: 308 TVDQRGMN-TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366
T R L + ++I +PVIANG+ L+D+E TG GVM G L
Sbjct: 200 TRRTRSSQPANLDAIKYIIENISDKNVPVIANGDCFKLSDLERITKYTGAHGVMAVRGLL 259
Query: 367 YNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMC-HHLLTLPENSDVRL-LV 424
NPALF G T W ++ ++ G F + HHL + EN +++ L+
Sbjct: 260 SNPALFAGYTTCPWGCIEKFCYWALEFG-------GLPFQLAQHHLYCMLENMELKKSLL 312
Query: 425 GKTNHIKDLRKAVDMLRERF 444
K ++K+ +D + F
Sbjct: 313 KKMMNLKNYISLIDWFNKTF 332
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 77 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 136
G P I PMV S+LP+R L R Y + Y+PM+ A +++ ++ R L + ED PL
Sbjct: 37 GRPVTIAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRNEHARISDLSTNNEDTPL 96
Query: 137 IIQRTIFPRLGSPRFI--LAPMVDA 159
I+Q + +F+ +AP D
Sbjct: 97 IVQVGVNNVADLLKFVEMVAPYCDG 121
>gi|398406519|ref|XP_003854725.1| hypothetical protein MYCGRDRAFT_37404, partial [Zymoseptoria
tritici IPO323]
gi|339474609|gb|EGP89701.1| hypothetical protein MYCGRDRAFT_37404 [Zymoseptoria tritici IPO323]
Length = 298
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/301 (29%), Positives = 156/301 (51%), Gaps = 18/301 (5%)
Query: 155 PMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR---------P 205
P+ S+LP+RLL+R+YG+ + Y PM+ AH+FI R + P +R
Sbjct: 1 PISRYSKLPFRLLARQYGTDITYVPMMLAHEFIRSHIARDADFTTHPLERERTPDGREHA 60
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
+I QF +D AA++ P DG+D+N GCPQ A + G L + L+ ++ +
Sbjct: 61 VIAQFASSDPIEFARAAEMIAPWVDGVDLNCGCPQSWAIKEGIGCSLMEKPELMAAIIRA 120
Query: 266 LRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + + VSCKIR+++D++KT++ +++++AG + VHGRT QR ++ +
Sbjct: 121 AKDVLPPEKSVSCKIRVHKDLSKTIKLVQIVQQAGVDFITVHGRTRSQR--SSTPPDYAA 178
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I ++R +T+P+IANG+ L+DV + T GVM A G L NPA+F E A
Sbjct: 179 ILSLRPHVTVPLIANGDAYTLSDVSKIASLTSADGVMAARGILENPAMFADHDVSPVECA 238
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
++++ + P+ HV + + + + L +DL + VD + +R
Sbjct: 239 KDFIEWAIRCPIPFPLVLHHVGEITARMPGMNKKEKKVL-----QECQDLMELVDFIDDR 293
Query: 444 F 444
+
Sbjct: 294 W 294
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 85 PMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
P+ S+LP+RLL+R+YG+ + Y PM+ AH+FI R + P +R
Sbjct: 1 PISRYSKLPFRLLARQYGTDITYVPMMLAHEFIRSHIARDADFTTHPLER 50
>gi|149055088|gb|EDM06905.1| PP3111 protein, isoform CRA_a [Rattus norvegicus]
Length = 298
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/179 (46%), Positives = 106/179 (59%), Gaps = 20/179 (11%)
Query: 316 TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375
G ASWEHI AVRKA+ IPV ANGNI+CL DVE C+ TGV GVM+AEGNL+NPALF G+
Sbjct: 2 AGTASWEHIKAVRKAVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGR 61
Query: 376 TRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTL-----PENSDVRLLVGKTNHI 430
+ WELA EYLD+V Q+P L Y R H+F + HH L + E + V+ L G
Sbjct: 62 SPAVWELADEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREELAKVKTLEGVAAVS 121
Query: 431 KDLR----KAVDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
+ L+ + +L+E EG + P N P WICQPY+RP P++
Sbjct: 122 QALKLRCQAGLGLLQEDMARQQEGVR--PADNLPAFH---------WICQPYIRPGPKE 169
>gi|344301622|gb|EGW31927.1| dihydrouridine synthase [Spathaspora passalidarum NRRL Y-27907]
Length = 346
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 140/268 (52%), Gaps = 6/268 (2%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
P +I PMV S+LP+R L R Y + YTPM+ A +F+ ++ R + DR +I+
Sbjct: 28 PVYIAGPMVRYSKLPFRELVRHYKCDIVYTPMILAREFVRNEIARYSDFTTNSRDRCVIV 87
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
Q N+ +++ + + P DGI IN GCP R GA L + L+ ++V ++++
Sbjct: 88 QVGVNNVEDMLKFVAMIHPFVDGIGINCGCPIKEQVREGIGAALMSEPNLVADMVRAVKE 147
Query: 269 AV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
V + KIRI+ D+N+T+ + + AG + VHGRT + R ++ + + I A
Sbjct: 148 KYGNTVCIDTKIRIHPDINETISFVDKVVDAGVDFITVHGRTKNTR--SSVPVNLDAIKA 205
Query: 327 VRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELAS 384
+R + IPVIANG+ LAD TGV GVM+A G L NPALF G + W
Sbjct: 206 IRNHVPANIPVIANGDGFSLADCHRIAKYTGVDGVMSARGVLKNPALFAGYEKAPWGAIE 265
Query: 385 EYLDLVAQYPVRLQYARGHVFNMCHHLL 412
++ L Y + + A+ H M ++
Sbjct: 266 MFMHLCTAYGLPFRVAQHHFSEMLEDII 293
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P +I PMV S+LP+R L R Y + YTPM+ A +F+ ++ R + DR +I+
Sbjct: 28 PVYIAGPMVRYSKLPFRELVRHYKCDIVYTPMILAREFVRNEIARYSDFTTNSRDRCVIV 87
Query: 139 QRTIFPRLGSPRFI--LAPMVDA 159
Q + +F+ + P VD
Sbjct: 88 QVGVNNVEDMLKFVAMIHPFVDG 110
>gi|50294732|ref|XP_449777.1| hypothetical protein [Candida glabrata CBS 138]
gi|49529091|emb|CAG62755.1| unnamed protein product [Candida glabrata]
Length = 344
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 145/295 (49%), Gaps = 9/295 (3%)
Query: 130 TPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD 189
T E+ PL I +T G P I PMV S+LP+R R+Y + + YTPM+ A +F+ +
Sbjct: 11 TKENDPLHIIKTRAQTHGRPATIAGPMVRYSKLPFRQTCRQYDTDIVYTPMILAREFVRN 70
Query: 190 KKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 249
++ R L + D PLI+Q N+ +L + A++ P CDGI IN GCP R G
Sbjct: 71 QQARIADLTTNKNDTPLIVQVGVNNVGDLMKFAEMVAPFCDGIGINCGCPIREQIREGIG 130
Query: 250 AYLQDDWPLLTNLVSSLRQ--AVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307
L + LL +V S++ ++ + KIRI+ D + TV R L +G + +HGR
Sbjct: 131 CALIYNPDLLCEMVKSVKSKYGAKLRLETKIRIHDDWDVTVNLCRRLCDSGVDWITIHGR 190
Query: 308 TVDQRGMN-TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366
T R L + ++I K +PV+ANG+ + D + TGV GVM G L
Sbjct: 191 TRTTRSSQPVNLEAIKYIVDKIKDKNVPVVANGDCFTMKDFKHISDYTGVQGVMAVRGVL 250
Query: 367 YNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVR 421
NPALF G + W + +Y L +A HHL + EN +R
Sbjct: 251 ANPALFAGHDKCPWGCVEWFWYWTTEYNT-LPFALTQ-----HHLYCMLENMGIR 299
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 12/147 (8%)
Query: 77 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 136
G P I PMV S+LP+R R+Y + + YTPM+ A +F+ +++ R L + D PL
Sbjct: 28 GRPATIAGPMVRYSKLPFRQTCRQYDTDIVYTPMILAREFVRNQQARIADLTTNKNDTPL 87
Query: 137 IIQRTIFPRLGSPRF--ILAPMVDASEL----PWRLLSRR-YGSHLCYTP-----MVSAH 184
I+Q + +F ++AP D + P R R G L Y P MV +
Sbjct: 88 IVQVGVNNVGDLMKFAEMVAPFCDGIGINCGCPIREQIREGIGCALIYNPDLLCEMVKSV 147
Query: 185 QFIADKKLRQEILMSTPEDRPLIIQFC 211
+ KLR E + +D + + C
Sbjct: 148 KSKYGAKLRLETKIRIHDDWDVTVNLC 174
>gi|366999164|ref|XP_003684318.1| hypothetical protein TPHA_0B02120 [Tetrapisispora phaffii CBS 4417]
gi|357522614|emb|CCE61884.1| hypothetical protein TPHA_0B02120 [Tetrapisispora phaffii CBS 4417]
Length = 350
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 104/330 (31%), Positives = 160/330 (48%), Gaps = 16/330 (4%)
Query: 130 TPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD 189
T E+ PL I +T P I PMV S+LP+R + R Y + + Y+PM+ A +F+ +
Sbjct: 16 TSENDPLHIIKTRMVTHNRPATIAGPMVRYSKLPFRQICRDYNADIVYSPMILAREFVRN 75
Query: 190 KKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 249
+ RQ D PLI+Q N+ +L + ++ P+CDGI IN GCP R G
Sbjct: 76 EHARQADFSRNSSDTPLIVQVGVNNVTDLLKFCEMVAPYCDGIGINCGCPIKEQIREGIG 135
Query: 250 AYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307
L + LL+++V ++++ + + + KIRI+ D++ TVE R + AG + +HGR
Sbjct: 136 CALIYNPDLLSSMVRTVKEKYKDTLRLETKIRIHDDLDTTVELCRRVCDAGADWITIHGR 195
Query: 308 TVDQRGMN-TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366
T R L + ++I + K IPV+ANG+ L+DV TG VM G L
Sbjct: 196 TRRTRSSQPVNLDAIKYIISKIKDKNIPVVANGDCFQLSDVTRIADYTGANAVMAVRGLL 255
Query: 367 YNPALFTGQTRPAWELASEYLDLVAQY---PVRLQYARGHVFNMCHHLLTLPENSDV-RL 422
NPALF+G R W + +Y P +L HHL + EN + +
Sbjct: 256 ENPALFSGYGRCPWGCIERFWYRTIEYTCLPFQLTQ---------HHLFCMLENMQLSKS 306
Query: 423 LVGKTNHIKDLRKAVDMLRERFIDYHEGRK 452
L+ + K L + +D + F G K
Sbjct: 307 LLKELMSTKSLPEMLDWFEDNFELKRYGEK 336
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P I PMV S+LP+R + R Y + + Y+PM+ A +F+ ++ RQ D PLI+
Sbjct: 35 PATIAGPMVRYSKLPFRQICRDYNADIVYSPMILAREFVRNEHARQADFSRNSSDTPLIV 94
Query: 139 Q 139
Q
Sbjct: 95 Q 95
>gi|19921524|ref|NP_609939.1| CG10495 [Drosophila melanogaster]
gi|7298533|gb|AAF53752.1| CG10495 [Drosophila melanogaster]
gi|17862030|gb|AAL39492.1| LD05576p [Drosophila melanogaster]
gi|220942934|gb|ACL84010.1| CG10495-PA [synthetic construct]
gi|220953160|gb|ACL89123.1| CG10495-PA [synthetic construct]
Length = 396
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 111/335 (33%), Positives = 165/335 (49%), Gaps = 21/335 (6%)
Query: 128 MSTPEDRPLIIQRTIFPRLGSPRF-ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQF 186
M P+ RP +F S + APMV S+L +R L R G L +TPM+ +
Sbjct: 1 MHLPQQRPHHDIAAMFAEAQSDFVRVSAPMVRYSKLEFRRLVRLNGVQLAFTPMMISDSI 60
Query: 187 IADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRG 246
+K RQ + +D+PLI QF D +A+L P+ DGID+N GCPQ A
Sbjct: 61 NNSEKARQNEFSTGADDQPLIAQFAAKDPTEFVTSAQLIYPYVDGIDLNCGCPQSWAMAK 120
Query: 247 HYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIY---QDVNKTVEYARMLERAGCQL 301
YG + L+ +V +R+ + VS K+R+ + + +T++ AR LE AG
Sbjct: 121 GYGCGMLRQPELVHQVVQEVRRTLPGDFSVSVKMRLLGGEESLQRTIDLARQLESAGVTF 180
Query: 302 LAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361
L +HGRT Q+ L ++ VR++L IP+I NGN++ D QTG AGVM
Sbjct: 181 LTLHGRTPAQKHSKDTL-DIPAMSQVRQSLQIPLIVNGNVESYRDACDMHEQTGAAGVMA 239
Query: 362 AEGNLYNPALFT-----GQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPE 416
A G L NPALF G+T P ++LD+ + L +F HH LT
Sbjct: 240 ARGLLANPALFNSNYPDGKTTP-LSCVQQWLDIASAAGDNL------LFQCFHHHLTFMY 292
Query: 417 NSDV-RLLVGKTNHIKDLRKAVDMLRERF-IDYHE 449
++ + R L + N + + VD L+E + ++Y E
Sbjct: 293 SAQMKRDLRVQFNSLGSKEQVVDFLKEHYNLEYSE 327
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 22/139 (15%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
+ APMV S+L +R L R G L +TPM+ + +K RQ + +D+PLI Q
Sbjct: 26 VSAPMVRYSKLEFRRLVRLNGVQLAFTPMMISDSINNSEKARQNEFSTGADDQPLIAQ-- 83
Query: 142 IFPRLGSPRFILA-----PMVDASEL------PWRLLSRRYGSHLCYTPMVSAHQFIADK 190
F F+ + P VD +L W +++ YG + P + HQ +
Sbjct: 84 -FAAKDPTEFVTSAQLIYPYVDGIDLNCGCPQSW-AMAKGYGCGMLRQPEL-VHQVV--- 137
Query: 191 KLRQEILMSTPEDRPLIIQ 209
QE+ + P D + ++
Sbjct: 138 ---QEVRRTLPGDFSVSVK 153
>gi|190405444|gb|EDV08711.1| dihydrouridine synthase 4 [Saccharomyces cerevisiae RM11-1a]
gi|259148383|emb|CAY81630.1| Dus4p [Saccharomyces cerevisiae EC1118]
gi|323332436|gb|EGA73845.1| Dus4p [Saccharomyces cerevisiae AWRI796]
gi|323336419|gb|EGA77687.1| Dus4p [Saccharomyces cerevisiae Vin13]
gi|323347323|gb|EGA81596.1| Dus4p [Saccharomyces cerevisiae Lalvin QA23]
gi|365764193|gb|EHN05718.1| Dus4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 367
Score = 152 bits (383), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 160/320 (50%), Gaps = 12/320 (3%)
Query: 130 TPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD 189
T E PL I +T G P I PMV S+LP+R L R Y + Y+PM+ A +++ +
Sbjct: 20 TEETDPLHIIKTRQKTHGRPVTIAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRN 79
Query: 190 KKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 249
+ R L + ED PLI+Q N+ +L + ++ P+CDGI IN GCP R G
Sbjct: 80 EHARISDLSTNNEDTPLIVQVGVNNVADLLKFVEMVAPYCDGIGINCGCPIKEQIREGIG 139
Query: 250 AYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307
L + LL ++V +++ ++ + KIRI++ +++TVE R L AG + +HGR
Sbjct: 140 CALIYNSDLLCSMVHAVKDKYGDKLRIETKIRIHEALDETVELCRKLCDAGVDWITIHGR 199
Query: 308 TVDQRGMN-TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366
T R L + ++I +PVIANG+ L+D+E TG GVM G L
Sbjct: 200 TRRTRSSQPANLDAIKYIIENISDKNVPVIANGDCFKLSDLERITKYTGAHGVMAVRGLL 259
Query: 367 YNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMC-HHLLTLPENSDVRL-LV 424
NPALF G T W ++ ++ G F + HHL + EN +++ L+
Sbjct: 260 SNPALFAGYTTCPWGCIEKFCYWALEFG-------GLPFQLAQHHLYCMLENMELKKSLL 312
Query: 425 GKTNHIKDLRKAVDMLRERF 444
+ ++K+ +D + F
Sbjct: 313 KEMMNLKNYISLIDWFNKTF 332
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 77 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 136
G P I PMV S+LP+R L R Y + Y+PM+ A +++ ++ R L + ED PL
Sbjct: 37 GRPVTIAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRNEHARISDLSTNNEDTPL 96
Query: 137 IIQRTIFPRLGSPRFI--LAPMVDA 159
I+Q + +F+ +AP D
Sbjct: 97 IVQVGVNNVADLLKFVEMVAPYCDG 121
>gi|409911553|ref|YP_006890018.1| TIM barrel oxidoreductase NifR3 [Geobacter sulfurreducens KN400]
gi|298505124|gb|ADI83847.1| TIM barrel oxidoreductase NifR3 [Geobacter sulfurreducens KN400]
Length = 325
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 139/257 (54%), Gaps = 10/257 (3%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
ILAPM + LP+RLL+R G+ LC+T MVS + + + K E+L S P DRPL IQ
Sbjct: 16 LILAPMAGITNLPFRLLAREQGAGLCFTEMVSVNGLVREGKKSFELLRSVPGDRPLGIQL 75
Query: 211 CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G+D + A + + D IDIN+GCP G+ L + + +V ++R+A
Sbjct: 76 FGDDPDVMGRVAATVDGYGDLIDINMGCPVKKVVGTGAGSALMREPDKVRAIVRAVRRAT 135
Query: 271 QVPVSCKIRIY---QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
++P++ KIR +D N ++ AR+ E GC + +H R+ Q M G A W + +
Sbjct: 136 RLPLTVKIRSGWSCEDAN-FIQIARIAEEEGCNAVTLHPRSRAQ--MFEGTADWTKLAEL 192
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYL 387
++A+ IPVI +G++ ADV A L +TG GVM A G L NP +F R A +L +
Sbjct: 193 KRAVAIPVIGSGDLFSAADVAAMLDRTGCDGVMIARGALGNPWIF----RQALDLMAGRE 248
Query: 388 DLVAQYPVRLQYARGHV 404
A RL AR H+
Sbjct: 249 PAAASPAERLAVARRHL 265
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 102/232 (43%), Gaps = 37/232 (15%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
ILAPM + LP+RLL+R G+ LC+T MVS + + + K E+L S P DRPL IQ
Sbjct: 16 LILAPMAGITNLPFRLLAREQGAGLCFTEMVSVNGLVREGKKSFELLRSVPGDRPLGIQL 75
Query: 141 -----TIFPRLGSPRFILAPMVDASEL--PWRLLSRRYGSHLCYTPMVSAHQFIADKKLR 193
+ R+ + ++D + +++ GS L P K+R
Sbjct: 76 FGDDPDVMGRVAATVDGYGDLIDINMGCPVKKVVGTGAGSALMREP----------DKVR 125
Query: 194 QEILMSTPEDR-PLIIQFCGN---DSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHY 248
+ R PL ++ + N + A++AE C+ + ++ P+ A+
Sbjct: 126 AIVRAVRRATRLPLTVKIRSGWSCEDANFIQIARIAEEEGCNAVTLH---PRSRAQMFEG 182
Query: 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQ 300
A DW L + L++AV +PV D+ + A ML+R GC
Sbjct: 183 TA----DWTKL----AELKRAVAIPVIGS----GDLFSAADVAAMLDRTGCD 222
>gi|397676089|ref|YP_006517627.1| nifR3 family TIM-barrel protein [Zymomonas mobilis subsp. mobilis
ATCC 29191]
gi|395396778|gb|AFN56105.1| TIM-barrel protein, nifR3 family [Zymomonas mobilis subsp. mobilis
ATCC 29191]
Length = 341
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 110/344 (31%), Positives = 171/344 (49%), Gaps = 39/344 (11%)
Query: 128 MSTPEDRPLIIQRTIFP-RLGSPRF----ILAPMVDASELPWRLLSRRYGSHLCYTPMVS 182
M++PE P I P ++GS R ILAPM ++LP+R + RRYGS L T M++
Sbjct: 1 MNSPEHNP--THNLISPIQIGSVRIDNPVILAPMTGVTDLPFRRIVRRYGSGLNVTEMIA 58
Query: 183 AHQFIADKKLRQEILMST--PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDG-IDINIGCP 239
+ I ++ RQ + ST P + P+ +Q G ++ E+AKL + IDIN+GCP
Sbjct: 59 SQAMI--RETRQSLQKSTWDPSEEPISVQLVGCTPDDMAESAKLNQDRGAAIIDINMGCP 116
Query: 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERA 297
G G+ L D L +++ + +AV +PV+ K+R+ D+N E AR+ +
Sbjct: 117 VRKVVSGDAGSALMRDLKLAASIIEATVKAVSLPVTLKMRMGWDLNSLNAPELARIAQDI 176
Query: 298 GCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVA 357
G Q++ VHGRT +Q + G A W I V+ A++IPVI NG+I L D + L Q+G
Sbjct: 177 GVQMVTVHGRTRNQ--LYKGHADWAFIRQVKDAVSIPVIVNGDINSLDDAKTALQQSGAD 234
Query: 358 GVMTAEGNLYNPALFT--------GQTRPAWELASEYLDLVAQYPVRLQY---------A 400
G+M G+ P L + G+ A + +Y + Y L Y A
Sbjct: 235 GIMVGRGSYGKPWLLSQLMQGLTDGEMEKAPSIDEQYRTITEHYDHMLSYYGTITGVNIA 294
Query: 401 RGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
R H+ + LP +++ R K N +D + +ML E +
Sbjct: 295 RKHI---GWYTKGLPASAEFR---NKINREEDPDRVKEMLAEFY 332
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 75 QLGSPRF----ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
Q+GS R ILAPM ++LP+R + RRYGS L T M+++ I ++ RQ + ST
Sbjct: 17 QIGSVRIDNPVILAPMTGVTDLPFRRIVRRYGSGLNVTEMIASQAMI--RETRQSLQKST 74
Query: 131 --PEDRPLIIQ 139
P + P+ +Q
Sbjct: 75 WDPSEEPISVQ 85
>gi|151940924|gb|EDN59306.1| dihydrouridine synthase [Saccharomyces cerevisiae YJM789]
gi|256269148|gb|EEU04483.1| Dus4p [Saccharomyces cerevisiae JAY291]
Length = 367
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 160/320 (50%), Gaps = 12/320 (3%)
Query: 130 TPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD 189
T E PL I +T G P I PMV S+LP+R L R Y + Y+PM+ A +++ +
Sbjct: 20 TEETDPLHIIKTRQKTHGRPVTIAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRN 79
Query: 190 KKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 249
+ R L + ED PLI+Q N+ +L + ++ P+CDGI IN GCP R G
Sbjct: 80 EHARISDLSTNNEDTPLIVQVGVNNVADLLKFVEMVAPYCDGIGINCGCPIKEQIREGIG 139
Query: 250 AYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307
L + LL ++V +++ ++ + KIRI++ +++TVE R L AG + +HGR
Sbjct: 140 CALIYNSDLLCSMVHAVKDKYGDKLRIETKIRIHEALDETVELCRKLCDAGVDWITIHGR 199
Query: 308 TVDQRGMN-TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366
T R L + ++I +PVIANG+ L+D+E TG GVM G L
Sbjct: 200 TRRTRSSQPANLDAIKYIIENISDKNVPVIANGDCFKLSDLERITKYTGAHGVMAVRGLL 259
Query: 367 YNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMC-HHLLTLPENSDVRL-LV 424
NPALF G T W ++ ++ G F + HHL + EN +++ L+
Sbjct: 260 SNPALFAGYTTCPWGCIEKFCYWALEFG-------GLPFQLTQHHLYCMLENMELKKSLL 312
Query: 425 GKTNHIKDLRKAVDMLRERF 444
+ ++K+ +D + F
Sbjct: 313 KEMMNLKNYISLIDWFDKTF 332
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 77 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 136
G P I PMV S+LP+R L R Y + Y+PM+ A +++ ++ R L + ED PL
Sbjct: 37 GRPVTIAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRNEHARISDLSTNNEDTPL 96
Query: 137 IIQRTIFPRLGSPRFI--LAPMVDA 159
I+Q + +F+ +AP D
Sbjct: 97 IVQVGVNNVADLLKFVEMVAPYCDG 121
>gi|323303732|gb|EGA57518.1| Dus4p [Saccharomyces cerevisiae FostersB]
gi|323307899|gb|EGA61159.1| Dus4p [Saccharomyces cerevisiae FostersO]
gi|349580100|dbj|GAA25261.1| K7_Dus4p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 367
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 160/320 (50%), Gaps = 12/320 (3%)
Query: 130 TPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD 189
T E PL I +T G P I PMV S+LP+R L R Y + Y+PM+ A +++ +
Sbjct: 20 TKETDPLHIIKTRQKTHGRPVTIAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRN 79
Query: 190 KKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 249
+ R L + ED PLI+Q N+ +L + ++ P+CDGI IN GCP R G
Sbjct: 80 EHARISDLSTNNEDTPLIVQVGVNNVADLLKFVEMVAPYCDGIGINCGCPIKEQIREGIG 139
Query: 250 AYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307
L + LL ++V +++ ++ + KIRI++ +++TVE R L AG + +HGR
Sbjct: 140 CALIYNSDLLCSMVHAVKDKYGDKLRIETKIRIHEALDETVELCRKLCDAGVDWITIHGR 199
Query: 308 TVDQRGMN-TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366
T R L + ++I +PVIANG+ L+D+E TG GVM G L
Sbjct: 200 TRRTRSSQPANLDAIKYIIENISDKNVPVIANGDCFKLSDLERITKYTGAHGVMAVRGLL 259
Query: 367 YNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMC-HHLLTLPENSDVRL-LV 424
NPALF G T W ++ ++ G F + HHL + EN +++ L+
Sbjct: 260 SNPALFAGYTTCPWGCIEKFCYWALEFG-------GLPFQLTQHHLYCMLENMELKKSLL 312
Query: 425 GKTNHIKDLRKAVDMLRERF 444
+ ++K+ +D + F
Sbjct: 313 KEMMNLKNYISLIDWFDKTF 332
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 77 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 136
G P I PMV S+LP+R L R Y + Y+PM+ A +++ ++ R L + ED PL
Sbjct: 37 GRPVTIAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRNEHARISDLSTNNEDTPL 96
Query: 137 IIQRTIFPRLGSPRFI--LAPMVDA 159
I+Q + +F+ +AP D
Sbjct: 97 IVQVGVNNVADLLKFVEMVAPYCDG 121
>gi|118082096|ref|XP_001231946.1| PREDICTED: tRNA-dihydrouridine synthase 4-like isoform 2 [Gallus
gallus]
Length = 301
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 121/217 (55%), Gaps = 6/217 (2%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
R G I APMV S+L +R L RRYG LCYTPMV A F+ K R + D
Sbjct: 21 RAGHVVKICAPMVRYSKLAFRTLVRRYGCDLCYTPMVVAADFVRSAKARDSEFTTNRGDN 80
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
PLI+QF +++ L +AA L P DG+D+N GCPQ A YGA L + L+ ++V
Sbjct: 81 PLIVQFAAKEAQVLCDAALLVCPFADGVDLNCGCPQRWAMAEGYGACLINKPELVRDMVR 140
Query: 265 SLRQAVQVP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+R + P VS KIRI++D+ KTV+ + E G + VHGR +++R +
Sbjct: 141 HVRNQIDNPRFSVSIKIRIHEDLKKTVDLCKKAEATGVSWITVHGRNIEERHQPV---HY 197
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358
+ I +++++ IPV+ANG+I+ L D E TG G
Sbjct: 198 DAIKVIKESIHIPVVANGDIKTLKDAENVHHLTGADG 234
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
I APMV S+L +R L RRYG LCYTPMV A F+ K R + D PLI+Q
Sbjct: 28 ICAPMVRYSKLAFRTLVRRYGCDLCYTPMVVAADFVRSAKARDSEFTTNRGDNPLIVQFA 87
Query: 142 IFPR--LGSPRFILAPMVDASEL----PWR-LLSRRYGSHLCYTP 179
L ++ P D +L P R ++ YG+ L P
Sbjct: 88 AKEAQVLCDAALLVCPFADGVDLNCGCPQRWAMAEGYGACLINKP 132
>gi|154416301|ref|XP_001581173.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121915398|gb|EAY20187.1| hypothetical protein TVAG_021320 [Trichomonas vaginalis G3]
Length = 312
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 92/268 (34%), Positives = 140/268 (52%), Gaps = 18/268 (6%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPED--RPLII 208
LAPM D ++ +R L R+ G LC+T ++AH ++ K R + T D + L++
Sbjct: 15 IFLAPMADVNDYSFRKLCRQNGVSLCWTGFINAHHWVTRTKQRDRDVWFTTRDNEKNLVV 74
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD-----DWPLLTNLV 263
Q G++ + L AK E CD I++N GC A R G +L D D L+ L+
Sbjct: 75 QLLGSNLEELVSCAKDVENFCDMIELNCGCTHCFASRSGCGFFLIDTQKHRDSALI--LI 132
Query: 264 SSLRQAVQVPVSCKIRIYQDVN------KTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
+L +++ PVS KIR+ D N +TV++A+ LER G L+ VH RT Q+ G
Sbjct: 133 QNLIKSINKPVSIKIRLISDDNSVPSLERTVKFAQDLERVGVSLITVHART--QQADKKG 190
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
++ I AV +A+++PVIANG I L + + +TG VM + NP T
Sbjct: 191 DVDYDAIKAVVQAVSVPVIANGGISSLEQAQEIIQRTGAYAVMAGQCFFKNPTCLTTNKN 250
Query: 378 PAWELASEYLDLVAQYPVRLQYARGHVF 405
P E++ EYL+L + LQ +R HV+
Sbjct: 251 PK-EISLEYLNLAKENNEDLQRSRKHVY 277
>gi|260752443|ref|YP_003225336.1| hypothetical protein Za10_0199 [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|384411139|ref|YP_005620504.1| nifR3 family TIM-barrel protein [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|258551806|gb|ACV74752.1| TIM-barrel protein, nifR3 family [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|335931513|gb|AEH62053.1| TIM-barrel protein, nifR3 family [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 341
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 109/344 (31%), Positives = 171/344 (49%), Gaps = 39/344 (11%)
Query: 128 MSTPEDRPLIIQRTIFP-RLGSPRF----ILAPMVDASELPWRLLSRRYGSHLCYTPMVS 182
M++PE P I P ++GS R ILAPM ++LP+R + RRYGS L T M++
Sbjct: 1 MNSPEHNP--THNLISPIQIGSVRIDNPVILAPMTGVTDLPFRRIVRRYGSGLNVTEMIA 58
Query: 183 AHQFIADKKLRQEILMST--PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDG-IDINIGCP 239
+ I ++ RQ + ST P + P+ +Q G ++ E+AKL + IDIN+GCP
Sbjct: 59 SQAMI--RETRQSLQKSTWDPSEEPISVQLVGCTPDDMAESAKLNQDRGAAIIDINMGCP 116
Query: 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERA 297
G G+ L D L +++ + +AV +PV+ K+R+ D+N E AR+ +
Sbjct: 117 VRKVVSGDAGSALMRDLKLAASIIEATVKAVSLPVTLKMRMGWDLNSLNAPELARIAQDI 176
Query: 298 GCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVA 357
G Q++ VHGRT +Q + G A W + V+ A++IPVI NG+I L D + L Q+G
Sbjct: 177 GVQMVTVHGRTRNQ--LYKGHADWAFVRQVKDAVSIPVIVNGDINSLDDAKTALQQSGAD 234
Query: 358 GVMTAEGNLYNPALFT--------GQTRPAWELASEYLDLVAQYPVRLQY---------A 400
G+M G+ P L + G+ A + +Y + Y L Y A
Sbjct: 235 GIMVGRGSYGKPWLLSQLMQGLTDGEMEKAPSIDEQYRTITEHYDHMLSYYGTITGVNIA 294
Query: 401 RGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
R H+ + LP +++ R K N +D + +ML E +
Sbjct: 295 RKHI---GWYTKGLPASAEFR---NKINREEDPDRVKEMLAEFY 332
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 75 QLGSPRF----ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
Q+GS R ILAPM ++LP+R + RRYGS L T M+++ I ++ RQ + ST
Sbjct: 17 QIGSVRIDNPVILAPMTGVTDLPFRRIVRRYGSGLNVTEMIASQAMI--RETRQSLQKST 74
Query: 131 --PEDRPLIIQ 139
P + P+ +Q
Sbjct: 75 WDPSEEPISVQ 85
>gi|39996108|ref|NP_952059.1| TIM barrel oxidoreductase NifR3 [Geobacter sulfurreducens PCA]
gi|39982873|gb|AAR34332.1| TIM barrel oxidoreductase NifR3 [Geobacter sulfurreducens PCA]
Length = 325
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 139/257 (54%), Gaps = 10/257 (3%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
ILAPM + LP+RLL+R G+ LC+T MVS + + + K E+L S P DRPL IQ
Sbjct: 16 LILAPMAGITNLPFRLLAREQGAGLCFTEMVSVNGLVREGKKSFELLRSVPGDRPLGIQL 75
Query: 211 CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G+D + A + + D IDIN+GCP G+ L + + +V ++R+A
Sbjct: 76 FGDDPDVMGRVAATVDGYGDLIDINMGCPVKKVVGTGAGSALMREPDKVRAIVRAVRRAT 135
Query: 271 QVPVSCKIRIY---QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
++P++ KIR +D N ++ AR+ E GC + +H R+ Q M G A W + +
Sbjct: 136 RLPLTVKIRSGWSCEDAN-FIQIARIAEEEGCNAVTLHPRSRAQ--MFEGTADWTKLAEL 192
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYL 387
++A+ IPVI +G++ ADV A L +TG GVM A G L NP +F R A +L +
Sbjct: 193 KQAVAIPVIGSGDLFSAADVAAMLDRTGCDGVMIARGALGNPWIF----RQALDLMAGRE 248
Query: 388 DLVAQYPVRLQYARGHV 404
A RL AR H+
Sbjct: 249 PAAASPAERLAVARRHL 265
Score = 65.1 bits (157), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 102/232 (43%), Gaps = 37/232 (15%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
ILAPM + LP+RLL+R G+ LC+T MVS + + + K E+L S P DRPL IQ
Sbjct: 16 LILAPMAGITNLPFRLLAREQGAGLCFTEMVSVNGLVREGKKSFELLRSVPGDRPLGIQL 75
Query: 141 -----TIFPRLGSPRFILAPMVDASEL--PWRLLSRRYGSHLCYTPMVSAHQFIADKKLR 193
+ R+ + ++D + +++ GS L P K+R
Sbjct: 76 FGDDPDVMGRVAATVDGYGDLIDINMGCPVKKVVGTGAGSALMREP----------DKVR 125
Query: 194 QEILMSTPEDR-PLIIQFCGN---DSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHY 248
+ R PL ++ + N + A++AE C+ + ++ P+ A+
Sbjct: 126 AIVRAVRRATRLPLTVKIRSGWSCEDANFIQIARIAEEEGCNAVTLH---PRSRAQMFEG 182
Query: 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQ 300
A DW L + L+QAV +PV D+ + A ML+R GC
Sbjct: 183 TA----DWTKL----AELKQAVAIPVIGS----GDLFSAADVAAMLDRTGCD 222
>gi|195580071|ref|XP_002079879.1| GD24181 [Drosophila simulans]
gi|194191888|gb|EDX05464.1| GD24181 [Drosophila simulans]
Length = 396
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 167/336 (49%), Gaps = 23/336 (6%)
Query: 128 MSTPEDRPLIIQRTIFPRLGSPRF-ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQF 186
M P+ RP +F S + APMV S+L +R L R G L +TPM+ +
Sbjct: 1 MHLPQQRPHHDIAALFAEAQSDFVRVSAPMVRYSKLEFRRLVRLNGVQLAFTPMMISDSI 60
Query: 187 IADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRG 246
+K RQ + +D+PLI QF D +A+L P+ DGID+N GCPQ A
Sbjct: 61 NNSEKARQNEFSTGADDQPLIAQFAAKDPTEFVTSAQLIYPYVDGIDLNCGCPQSWAMAK 120
Query: 247 HYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIY---QDVNKTVEYARMLERAGCQL 301
YG + L+ +V +R+ + VS K+R+ + + +T++ AR LE AG
Sbjct: 121 GYGCGMLRQPELVHQVVQEVRRTLPGDFSVSVKMRLLGGEESLQRTIDLARQLEHAGVTF 180
Query: 302 LAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361
L +HGRT Q+ L ++ VR++L IP+I NGN++ D QTG AGVM
Sbjct: 181 LTLHGRTPAQKHSKDTL-DIPSMSQVRQSLQIPLIVNGNVESYRDACDMHEQTGAAGVMA 239
Query: 362 AEGNLYNPALFT-----GQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMC-HHLLTLP 415
A G L NPALF G+T P ++LD+ + AR ++ C HH LT
Sbjct: 240 ARGLLANPALFNRSYPEGKTTP-LSCVQQWLDIASA-------ARDNLLFQCFHHHLTFM 291
Query: 416 ENSDV-RLLVGKTNHIKDLRKAVDMLRERF-IDYHE 449
++ + R L + N + + VD L++ + ++Y E
Sbjct: 292 YSAHMKRDLRVQFNSLGSKEQVVDFLKKHYNLEYSE 327
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 22/139 (15%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
+ APMV S+L +R L R G L +TPM+ + +K RQ + +D+PLI Q
Sbjct: 26 VSAPMVRYSKLEFRRLVRLNGVQLAFTPMMISDSINNSEKARQNEFSTGADDQPLIAQ-- 83
Query: 142 IFPRLGSPRFILA-----PMVDASEL------PWRLLSRRYGSHLCYTPMVSAHQFIADK 190
F F+ + P VD +L W +++ YG + P + HQ +
Sbjct: 84 -FAAKDPTEFVTSAQLIYPYVDGIDLNCGCPQSW-AMAKGYGCGMLRQPEL-VHQVV--- 137
Query: 191 KLRQEILMSTPEDRPLIIQ 209
QE+ + P D + ++
Sbjct: 138 ---QEVRRTLPGDFSVSVK 153
>gi|452839637|gb|EME41576.1| hypothetical protein DOTSEDRAFT_73865 [Dothistroma septosporum
NZE10]
Length = 338
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 159/330 (48%), Gaps = 31/330 (9%)
Query: 126 ILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQ 185
IL S EDR P I APM+ S+LP+RL++R+YG+ + YTPM+ AH+
Sbjct: 24 ILASAKEDR-------------RPLNIAAPMIRYSKLPFRLVARQYGTDVMYTPMMLAHE 70
Query: 186 FIADKKLRQEILMSTPEDR---------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINI 236
F R + P +R +I QF +D AA+L P DG+++N
Sbjct: 71 FNRSHIARDSDFTTHPLERAQTTDGRHHAVIAQFAASDPAEFARAAELISPWVDGVNLNC 130
Query: 237 GCPQMVAKRGHYGAYLQDDWPLLTNLV--SSLRQAVQVPVSCKIRIYQDVNKTVEYARML 294
GCPQ A + G L ++ + +V + R A VS KIRI++D+ +T+++ R++
Sbjct: 131 GCPQSWAIKEGIGCSLMENPEAVAEMVRMTKARLASDKSVSVKIRIHKDIARTIDWVRIV 190
Query: 295 ERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQT 354
+ AG + VHGRT QR ++ +E + +R + +P+ ANG+ L+D + T
Sbjct: 191 QDAGVDYITVHGRTRSQR--SSTPPDYEAVRQLRPHIKVPMFANGDAYTLSDTKKIADLT 248
Query: 355 GVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTL 414
GVM A G L NPALF G + ++++ + P+ H+ M + +
Sbjct: 249 LADGVMAARGMLENPALFAGYQATPPQCVHDFMNWAVKCPIPYPLVLHHIGEMTARMPGM 308
Query: 415 PENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
+ L+ KDL +D + + F
Sbjct: 309 TKKEKKHLMA-----CKDLLDLIDYVEDTF 333
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 17/86 (19%)
Query: 64 HSSTARSDAWTQLGSPRF---------------ILAPMVDASELPWRLLSRRYGSHLCYT 108
H A +D T +G PR I APM+ S+LP+RL++R+YG+ + YT
Sbjct: 6 HDGAASAD--THVGRPRIFRILASAKEDRRPLNIAAPMIRYSKLPFRLVARQYGTDVMYT 63
Query: 109 PMVSAHQFIADKKLRQEILMSTPEDR 134
PM+ AH+F R + P +R
Sbjct: 64 PMMLAHEFNRSHIARDSDFTTHPLER 89
>gi|194879780|ref|XP_001974300.1| GG21157 [Drosophila erecta]
gi|190657487|gb|EDV54700.1| GG21157 [Drosophila erecta]
Length = 396
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 151/302 (50%), Gaps = 19/302 (6%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R G L +TPM+ + +K RQ + +D+PLI QF
Sbjct: 26 VSAPMVRYSKLEFRRLVRLNGVQLAFTPMMISDSINNSEKARQNEFSTGADDQPLIAQFA 85
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV- 270
D +A+L P+ DGID+N GCPQ A YG + L+ +V +R+ +
Sbjct: 86 AKDPTEFVTSAQLIYPYVDGIDLNCGCPQSWAMAKGYGCGMLRQPELVRQVVQEVRRTLP 145
Query: 271 -QVPVSCKIRIY---QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
VS K+R+ + + T++ AR LE+AG L +HGRT Q+ L +
Sbjct: 146 ADFSVSVKMRLLGGEKSLESTIDLARQLEQAGVTFLTLHGRTPAQKHSKDTL-DIAAMAE 204
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT-----GQTRPAWE 381
VRK+L IP+I NGN++ D QTG AGVM A G L NPALF G+T P
Sbjct: 205 VRKSLQIPLIVNGNVESYRDACDIHDQTGAAGVMAARGLLANPALFNSNYPEGKTTP-LS 263
Query: 382 LASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDV-RLLVGKTNHIKDLRKAVDML 440
++LD+ + L +F HH LT ++ + R L + N + + VD L
Sbjct: 264 CVQQWLDIASAAGDNL------LFQCFHHHLTFMWSAHMKRDLRVQFNSLSSKEQVVDFL 317
Query: 441 RE 442
+E
Sbjct: 318 KE 319
Score = 42.7 bits (99), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 22/139 (15%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
+ APMV S+L +R L R G L +TPM+ + +K RQ + +D+PLI Q
Sbjct: 26 VSAPMVRYSKLEFRRLVRLNGVQLAFTPMMISDSINNSEKARQNEFSTGADDQPLIAQ-- 83
Query: 142 IFPRLGSPRFILA-----PMVDASEL------PWRLLSRRYGSHLCYTPMVSAHQFIADK 190
F F+ + P VD +L W +++ YG + P + +
Sbjct: 84 -FAAKDPTEFVTSAQLIYPYVDGIDLNCGCPQSW-AMAKGYGCGMLRQPELV-------R 134
Query: 191 KLRQEILMSTPEDRPLIIQ 209
++ QE+ + P D + ++
Sbjct: 135 QVVQEVRRTLPADFSVSVK 153
>gi|56552023|ref|YP_162862.1| nitrogen regulator protein NIfR3 [Zymomonas mobilis subsp. mobilis
ZM4]
gi|56543597|gb|AAV89751.1| TIM-barrel protein, nifR3 family [Zymomonas mobilis subsp. mobilis
ZM4]
Length = 341
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 109/344 (31%), Positives = 171/344 (49%), Gaps = 39/344 (11%)
Query: 128 MSTPEDRPLIIQRTIFP-RLGSPRF----ILAPMVDASELPWRLLSRRYGSHLCYTPMVS 182
M++PE P I P ++GS R ILAPM ++LP+R + RRYGS L T M++
Sbjct: 1 MNSPEHNP--THNLISPIQIGSVRIDNPVILAPMTGVTDLPFRRIVRRYGSGLNVTEMIA 58
Query: 183 AHQFIADKKLRQEILMST--PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDG-IDINIGCP 239
+ I ++ RQ + ST P + P+ +Q G ++ E+AKL + IDIN+GCP
Sbjct: 59 SQAMI--RETRQSLQKSTWDPYEEPISVQLVGCTPDDMAESAKLNQDRGAAIIDINMGCP 116
Query: 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERA 297
G G+ L D L +++ + +AV +PV+ K+R+ D+N E AR+ +
Sbjct: 117 VRKVVSGDAGSALMRDLKLAASIIEATVKAVSLPVTLKMRMGWDLNSLNAPELARIAQDI 176
Query: 298 GCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVA 357
G Q++ VHGRT +Q + G A W + V+ A++IPVI NG+I L D + L Q+G
Sbjct: 177 GVQMVTVHGRTRNQ--LYKGHADWAFVRQVKDAVSIPVIVNGDINSLDDAKTALQQSGAD 234
Query: 358 GVMTAEGNLYNPALFT--------GQTRPAWELASEYLDLVAQYPVRLQY---------A 400
G+M G+ P L + G+ A + +Y + Y L Y A
Sbjct: 235 GIMVGRGSYGKPWLLSQLMQGLTDGEMEKAPSIDEQYRTITEHYDHMLSYYGTITGVNIA 294
Query: 401 RGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
R H+ + LP +++ R K N +D + +ML E +
Sbjct: 295 RKHI---GWYTKGLPASAEFR---NKINREEDPDRVKEMLAEFY 332
Score = 47.8 bits (112), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 75 QLGSPRF----ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
Q+GS R ILAPM ++LP+R + RRYGS L T M+++ I ++ RQ + ST
Sbjct: 17 QIGSVRIDNPVILAPMTGVTDLPFRRIVRRYGSGLNVTEMIASQAMI--RETRQSLQKST 74
Query: 131 --PEDRPLIIQ 139
P + P+ +Q
Sbjct: 75 WDPYEEPISVQ 85
>gi|344231352|gb|EGV63234.1| dihydrouridine synthase [Candida tenuis ATCC 10573]
Length = 336
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 162/326 (49%), Gaps = 14/326 (4%)
Query: 122 LRQEILMSTPEDRPL-IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPM 180
L++ I P+ +P+ IIQ I + I PMV S+LP+R L R + + Y+PM
Sbjct: 2 LKERITPRDPKYKPINIIQVNIANNKYTT--IAGPMVRYSKLPFRALLRNFKCDIVYSPM 59
Query: 181 VSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQ 240
+ A +F+ + R + ED+ LI+Q N+ +L + P+ DGI +N GCP
Sbjct: 60 ILAREFVRNDIARLSDFTTNSEDKSLIVQVGVNNELDLLRFVDMVHPYVDGIGLNCGCPI 119
Query: 241 MVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAG 298
GA L + L+ ++ ++ + V + KIRI++D+ +TVE+ + ++ +G
Sbjct: 120 KEQVAEGIGAALMSEPDLVARMIKVVKDKYKDTVCIDAKIRIHKDLEETVEFVKKVQASG 179
Query: 299 CQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358
+ +HGRT R ++ + + I VR+ T+PV+ANG+ DVE + TG G
Sbjct: 180 VDFITIHGRTKSTR--SSIPVNLDAIKYVRQFTTVPVMANGDCFNPEDVERICSYTGCDG 237
Query: 359 VMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENS 418
VM+A G L NPALF G + W + Y + + + H+ M H +LT N+
Sbjct: 238 VMSARGVLQNPALFAGYDKTPWMAVELFWHYSMSYGLPFRIIQHHLSEMLHQILT---NA 294
Query: 419 DVRLLVGKTNHIKDLRKAVDMLRERF 444
++ + N I +L +D F
Sbjct: 295 KLK----EMNFINNLVDLMDWFDHNF 316
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
I PMV S+LP+R L R + + Y+PM+ A +F+ + R + ED+ LI+Q
Sbjct: 31 IAGPMVRYSKLPFRALLRNFKCDIVYSPMILAREFVRNDIARLSDFTTNSEDKSLIVQVG 90
Query: 142 IFPRLGSPRFI--LAPMVDASEL 162
+ L RF+ + P VD L
Sbjct: 91 VNNELDLLRFVDMVHPYVDGIGL 113
>gi|148262987|ref|YP_001229693.1| nifR3 family TIM-barrel protein [Geobacter uraniireducens Rf4]
gi|146396487|gb|ABQ25120.1| tRNA-U20-dihydrouridine synthase [Geobacter uraniireducens Rf4]
Length = 347
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 126/224 (56%), Gaps = 4/224 (1%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
ILAPM + LP R+L+R G+ L +T MVS + + + K ++L EDRPL IQ
Sbjct: 37 LILAPMAGLTNLPMRVLARECGAALTFTEMVSVNGLVREGKKTFDLLRRDQEDRPLGIQI 96
Query: 211 CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G+D L E A+L EP+ + IDIN+GCP G+ L + + ++ ++R+A
Sbjct: 97 FGDDPDLLAEGARLVEPYGELIDINMGCPVRKVVGSGAGSALLREPAKVALILKAVRKAT 156
Query: 271 QVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+P++ KIR V + +E R+ E G + +H R+ Q M G A W IT ++
Sbjct: 157 SLPLTIKIRTGWVVEEQSFLEIGRIAEAEGVDAVTLHPRSRAQ--MFEGHADWSRITELK 214
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
AL+IPVI +G+I ADV A LAQTG GVM A G L NP +F
Sbjct: 215 GALSIPVIGSGDIFSAADVTAMLAQTGCDGVMIARGGLGNPWIF 258
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
ILAPM + LP R+L+R G+ L +T MVS + + + K ++L EDRPL IQ
Sbjct: 37 LILAPMAGLTNLPMRVLARECGAALTFTEMVSVNGLVREGKKTFDLLRRDQEDRPLGIQ 95
>gi|195031103|ref|XP_001988289.1| GH11083 [Drosophila grimshawi]
gi|193904289|gb|EDW03156.1| GH11083 [Drosophila grimshawi]
Length = 398
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 113/354 (31%), Positives = 169/354 (47%), Gaps = 27/354 (7%)
Query: 128 MSTPEDRPLIIQRTIFPRLGSPRFIL--APMVDASELPWRLLSRRYGSHLCYTPMVSAHQ 185
M P+ RP +F +P F+ APMV S+L +R L R+ G L +TPM+ +
Sbjct: 1 MELPKQRPHHDITALFA--DAPDFVRVSAPMVRYSKLEFRRLLRQNGVQLAFTPMMISDS 58
Query: 186 FIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKR 245
+K RQ + P+D+PLI QF D+ +A+L P+ DGID+N GCPQ A
Sbjct: 59 INNSEKARQNEFTTGPDDQPLIAQFAAKDATEFVTSAQLIYPYVDGIDLNCGCPQSWAIA 118
Query: 246 GHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQ------DVNKTVEYARMLERA 297
YG L + +++ LR+ + VS K+R+ Q + KT++ A+ LE
Sbjct: 119 KGYGCGLLRQPDQMRDMIQCLRRTLPTGFSVSVKMRLLQGSDSDISLQKTIQLAQQLEHC 178
Query: 298 GCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVA 357
G L +HGRT Q+ L + + V ++L IP+I NGN++ D A T A
Sbjct: 179 GVTFLTLHGRTPAQKHSKDTL-NVAAMADVAQSLQIPLIVNGNVESYRDACELHANTQAA 237
Query: 358 GVMTAEGNLYNPALFT-----GQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLL 412
GVM A G L NPALF +T P ++LD+ RL F HH L
Sbjct: 238 GVMAARGLLANPALFNSDYPLAETTPK-SCVQQWLDIAQSAGERLH------FQCFHHHL 290
Query: 413 TLPENSDV-RLLVGKTNHIKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSSNH 465
T +S++ R L + N + + ++ L E + D + + P P + NH
Sbjct: 291 TFMWSSEMKRALRVQFNSLGSKSQVLEFLAEHY-DVRQSAGISPDPYTNCTYNH 343
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 17/115 (14%)
Query: 78 SPRFIL--APMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
+P F+ APMV S+L +R L R+ G L +TPM+ + +K RQ + P+D+P
Sbjct: 19 APDFVRVSAPMVRYSKLEFRRLLRQNGVQLAFTPMMISDSINNSEKARQNEFTTGPDDQP 78
Query: 136 LIIQRTIFPRLGSPRFILA-----PMVDASEL------PWRLLSRRYGSHLCYTP 179
LI Q F + F+ + P VD +L W +++ YG L P
Sbjct: 79 LIAQ---FAAKDATEFVTSAQLIYPYVDGIDLNCGCPQSW-AIAKGYGCGLLRQP 129
>gi|25144369|ref|NP_498078.2| Protein C45G9.2 [Caenorhabditis elegans]
gi|21431919|sp|Q09504.2|YQI2_CAEEL RecName: Full=Uncharacterized tRNA-dihydrouridine synthase-like
protein C45G9.2
gi|351059809|emb|CCD67391.1| Protein C45G9.2 [Caenorhabditis elegans]
Length = 284
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 125/241 (51%), Gaps = 6/241 (2%)
Query: 156 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDS 215
MV S+L +R L R Y +C+TPM+ A FI +K R L D PLI+QF +D
Sbjct: 1 MVRYSKLAFRQLVRVYDVDVCFTPMIYAKNFIESEKCRSSELSVCEGDSPLIVQFATDDP 60
Query: 216 KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVP-- 273
L+EAA++ G+D+N GCP+ + +G+ L LL ++V R + P
Sbjct: 61 FVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALLSKPELLADMVRQTRARIPDPDF 120
Query: 274 -VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT 332
VS KIRI D+ KTV+ R E AG L VHGRT QR + + + V+ +++
Sbjct: 121 SVSLKIRINHDIEKTVDLCRKAEAAGVTHLTVHGRTPSQRAEPIDIQA---LRIVKDSVS 177
Query: 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQ 392
+P+IANG I + QTGV G+M A G L NPALF G + ++ L +
Sbjct: 178 VPIIANGGITTREEALFLAEQTGVDGIMAANGLLDNPALFAGHEHTPSDCVENFMRLSRE 237
Query: 393 Y 393
Y
Sbjct: 238 Y 238
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 86 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
MV S+L +R L R Y +C+TPM+ A FI +K R L D PLI+Q
Sbjct: 1 MVRYSKLAFRQLVRVYDVDVCFTPMIYAKNFIESEKCRSSELSVCEGDSPLIVQ 54
>gi|209963474|ref|YP_002296389.1| tRNA-dihydrouridine synthase B [Rhodospirillum centenum SW]
gi|209956940|gb|ACI97576.1| tRNA-dihydrouridine synthase B, putative [Rhodospirillum centenum
SW]
Length = 338
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 103/309 (33%), Positives = 157/309 (50%), Gaps = 29/309 (9%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS--TPEDRPLII 208
ILAPM S++P+R L +R G+ L + M+++ I + R+ +L + +PE+ P+ +
Sbjct: 19 VILAPMSGVSDMPFRRLVKRTGAGLVVSEMIASQAMI--RASRESMLKTEWSPEEAPISM 76
Query: 209 QFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
Q G D + + EAA+L E IDIN GCP G+ G+ L D PL ++
Sbjct: 77 QLAGCDPEAMAEAARLNEDRGAHIIDINFGCPVKKVVNGYAGSALMKDEPLAGRIMEQTV 136
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+AV VPV+ K+R D AR+ E G +++ VHGRT Q M G A W+ I
Sbjct: 137 KAVSVPVTMKMRKGWDAGNLNAPRLARIAEECGIRMVTVHGRTRCQ--MYNGTADWKFIR 194
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP--------ALFTGQTR 377
V++A++IPVIANG+I LADV CL ++G GVM G P L TG+ R
Sbjct: 195 TVKEAVSIPVIANGDINTLADVVRCLEESGADGVMIGRGTYGRPWFLAQVMHYLRTGEAR 254
Query: 378 PAWELASEYLDLVAQYPVRLQY---------ARGHVFNMCHHLLTLPENSDVRLLVGKTN 428
P LA + ++ Y L++ AR HV + LP ++D R + +
Sbjct: 255 PDPSLAEQLTIVLEHYEAILEHYGAEAGLRIARKHV---AWYSKGLPGSADYRNAIMTMD 311
Query: 429 HIKDLRKAV 437
+++A+
Sbjct: 312 QPARVKQAI 320
>gi|270009693|gb|EFA06141.1| hypothetical protein TcasGA2_TC008984 [Tribolium castaneum]
Length = 418
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 91/267 (34%), Positives = 127/267 (47%), Gaps = 24/267 (8%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+L +R L + Y LCYTPM+ A F K R + D PLI QF
Sbjct: 27 ICAPMVRYSKLQFRNLVKSYNCDLCYTPMILADSFCKSGKARANEFTTNMNDTPLITQFA 86
Query: 212 GNDSKNLTEAAKLAEP-----------------HCDGIDINIGCPQMVAKRGHYGAYLQD 254
N + AA + P CDG+D+N GCPQ AK G + +
Sbjct: 87 ANKVYDFVGAAYMVSPLVFGLNLANFYRFFIFSFCDGVDLNCGCPQRWAKLQGLGCIMLE 146
Query: 255 DWPLLTNLVSSLRQAVQVP--VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR 312
++ +LV R + P VS K+R+ +D+ ++VE R LE G L VHGRT DQ
Sbjct: 147 KPEVIYDLVKQCRNVIPKPFTVSVKLRLQKDLRRSVEICRQLEHCGVSFLTVHGRTPDQL 206
Query: 313 GMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
TG + E + + ++ +PV+ANG ++ L D +T GVM A G L NP LF
Sbjct: 207 ---TGEVNKEALNLIVGSVNVPVVANGGVKSLEDCLELQEKTNCKGVMVANGLLTNPTLF 263
Query: 373 TGQTRPAWELASEYLDLVAQYPVRLQY 399
T + + +L++ Y L Y
Sbjct: 264 TESSVTTTDCIQRWLNIC--YNTTLDY 288
>gi|73668536|ref|YP_304551.1| hypothetical protein Mbar_A1003 [Methanosarcina barkeri str.
Fusaro]
gi|72395698|gb|AAZ69971.1| tRNA-U20-dihydrouridine synthase [Methanosarcina barkeri str.
Fusaro]
Length = 323
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 103/316 (32%), Positives = 163/316 (51%), Gaps = 31/316 (9%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL--MSTPEDRPLII 208
+LAPM D + L +RLL R+ G+ L YT M+SA + + R+ +L +S+PEDRP +
Sbjct: 17 LLLAPMADVTNLAFRLLCRQNGADLTYTEMISADALLNEN--RKSLLKGLSSPEDRPFGV 74
Query: 209 QFCGNDSKNLTEAAKLAEPHC--DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSL 266
Q G+ + L EAA E + ID+N+GCP G+ L + L+ ++S L
Sbjct: 75 QLVGSSPEKLREAALFIEDEYRPELIDVNMGCPAKRITGTGCGSALLNSKKLIYEIISDL 134
Query: 267 RQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
++ PV+ KIRI + KT+E AR++E AG L +HGR +Q M +G + I A
Sbjct: 135 TDVLKTPVTAKIRILKRDEKTLEIARLIEEAGASALTIHGRRAEQ--MYSGSSDLTVIRA 192
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQ--- 375
V++ L+IPVIANG+I+ EA L T G+M + NP +F TG+
Sbjct: 193 VKQELSIPVIANGDIRNEESAEAALDFTECDGLMIGRAAMGNPFIFKRIRHYLETGERLE 252
Query: 376 -TRPAWELA--SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKD 432
R +L Y+ L+ +Y + +A ++ H S R + K N++KD
Sbjct: 253 FDRQVRQLEDFENYIALLEEYDL---HASTNIRMHAHWFTKGLRGS--RQIREKINNLKD 307
Query: 433 LRKAVDMLRERFIDYH 448
+ V++++ D+H
Sbjct: 308 GKAIVELIK----DFH 319
>gi|20088934|ref|NP_615009.1| hypothetical protein MA0035 [Methanosarcina acetivorans C2A]
gi|19913780|gb|AAM03489.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 323
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 129/241 (53%), Gaps = 8/241 (3%)
Query: 134 RPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLR 193
+ L I RT P +LAPM D + L +RLL R+ G+ L YT M++A + + +
Sbjct: 4 KKLKIGRTELP----GNLLLAPMADVTNLAFRLLCRQDGADLAYTEMINADALLNESRKS 59
Query: 194 QEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCD--GIDINIGCPQMVAKRGHYGAY 251
+++PEDRP +Q G+ K L EAA E + IDIN+GCP G+
Sbjct: 60 FIKGLNSPEDRPFGVQLVGSCPKKLREAALFVEEEYEPEVIDINMGCPAKCITGAGCGSA 119
Query: 252 LQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQ 311
L + L+ ++S L A+ PVS KIR+ KT+E A ++E+AG L VHGRT Q
Sbjct: 120 LLNSPELVRKIISELADALNTPVSAKIRLLGKEEKTLEIACLIEKAGASALTVHGRTAAQ 179
Query: 312 RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371
M +G A+ I AV+ L+IPVIANG+I+ + L TG G+M + NP +
Sbjct: 180 --MYSGNANLMGIKAVKNELSIPVIANGDIKDEESAKKTLELTGCDGLMIGRAAMGNPFI 237
Query: 372 F 372
F
Sbjct: 238 F 238
>gi|326387744|ref|ZP_08209350.1| dihydrouridine synthase TIM-barrel protein nifR3 [Novosphingobium
nitrogenifigens DSM 19370]
gi|326207790|gb|EGD58601.1| dihydrouridine synthase TIM-barrel protein nifR3 [Novosphingobium
nitrogenifigens DSM 19370]
Length = 342
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 115/331 (34%), Positives = 165/331 (49%), Gaps = 23/331 (6%)
Query: 128 MSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI 187
MST + P + I P +LAPM S+LP+R + RR+GS L T M+++ I
Sbjct: 1 MSTTPNPPSLSAIAIGPVSIDCPVVLAPMTGVSDLPFRRMVRRFGSGLNVTEMIASPAAI 60
Query: 188 ADKKLRQEILMST--PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDG-IDINIGCPQMVAK 244
++ RQ I + P + P+ +Q G + + + EAAKL+E IDIN+GCP
Sbjct: 61 --RETRQSIQKAAWDPAEEPVSMQLVGCEPEQMGEAAKLSEDRGAAIIDINMGCPVRKVV 118
Query: 245 RGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY--QDVNKTVEYARMLERAGCQLL 302
G G+ L D PL L+ + +AV VPV+ K+R+ D E AR+ + G +++
Sbjct: 119 NGDAGSALMRDIPLAARLIEATVKAVSVPVTVKMRMGWCHDSLNAPELARIAQDLGAKMI 178
Query: 303 AVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362
VHGRT +Q M G A W + V+ A++IPVI NG+I +ADV L Q+G GVM
Sbjct: 179 TVHGRTRNQ--MYKGSADWGFVRKVKDAVSIPVIVNGDICSIADVATALEQSGADGVMIG 236
Query: 363 EGNLYNPALFTGQT----RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENS 418
G P L GQ R ELA LD QY V ++ H +M H + +
Sbjct: 237 RGAYGRPWLL-GQIMHWLRTGEELADPALD--QQYEVIIE----HYQDMLSHYGAMTGGN 289
Query: 419 DVRLLVGKTNHIKDLRKAVDML-RERFIDYH 448
R +G + K L + + R FID H
Sbjct: 290 MARKHLGW--YTKGLPGSAEFRNRVNFIDDH 318
>gi|87199943|ref|YP_497200.1| dihydrouridine synthase TIM-barrel protein nifR3 [Novosphingobium
aromaticivorans DSM 12444]
gi|87135624|gb|ABD26366.1| tRNA-U20-dihydrouridine synthase [Novosphingobium aromaticivorans
DSM 12444]
Length = 351
Score = 147 bits (372), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 159/313 (50%), Gaps = 26/313 (8%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PEDRPLII 208
+LAPM S+LP+R + RR+GS L T M+++ I ++ RQ I + P + P+ +
Sbjct: 24 VVLAPMTGVSDLPFRTIVRRFGSGLNVTEMIASPAAI--RETRQSIQKAAWHPTEEPVSM 81
Query: 209 QFCGNDSKNLTEAAKLAEPHCDG-IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
Q G + + + EAAKL+E IDIN+GCP G G+ L D PL T L+ +
Sbjct: 82 QLVGCEPEQMAEAAKLSEDKGAAIIDINMGCPVRKVVNGDAGSALMRDIPLATRLIEATV 141
Query: 268 QAVQVPVSCKIRIY--QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+AV+VPV+ K+R+ D E AR+ E G +++ VHGRT +Q M G A W +
Sbjct: 142 KAVKVPVTVKMRMGWCHDSLNAPELARIAEDLGAKMITVHGRTRNQ--MYKGSADWAFVR 199
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTR 377
+V++A++IPVI NG+I + DV + Q+G GVM G+ P L TG+
Sbjct: 200 SVKEAVSIPVIVNGDICGIEDVATAIEQSGADGVMIGRGSYGRPWLLGQIMHWLDTGERL 259
Query: 378 PAWELASEYLDLVAQY-PVRLQYARGHVFNMCHHLL-----TLPENSDVRLLVGKTNHIK 431
LA +Y +V Y ++ Y NM L L ++D R K N I
Sbjct: 260 ADPPLAEQYALIVEHYHAMQEHYGEMTGVNMARKHLGWYTKGLHGSADFR---NKVNFID 316
Query: 432 DLRKAVDMLRERF 444
D + + L + +
Sbjct: 317 DPKAVLASLADFY 329
>gi|429861207|gb|ELA35907.1| dihydrouridine synthase family [Colletotrichum gloeosporioides Nara
gc5]
Length = 455
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 118/208 (56%), Gaps = 11/208 (5%)
Query: 175 LCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDI 234
+ YTPM A F + R + FC ND L AA A P+CD +D+
Sbjct: 16 VAYTPMFHARIFNDTEHYRDGHFQA----------FCANDPDALLGAALKAAPYCDAVDL 65
Query: 235 NIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARML 294
N+GCPQ +A++G YGA+LQ+D L+ L+++L + + +PV+ KIRI T+ YA+ +
Sbjct: 66 NLGCPQGIARKGKYGAFLQEDQELIFKLINTLHKNLPIPVTAKIRILDTKEATLAYAKNV 125
Query: 295 ERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQT 354
AG ++ VHGR +Q+G TGLA W + A T+ + ANGNI AD+ L T
Sbjct: 126 LAAGASIVTVHGRRREQKGHLTGLADWGRLREQLPAETV-LFANGNILQHADLARALEAT 184
Query: 355 GVAGVMTAEGNLYNPALFTGQTRPAWEL 382
G G+M+AEGNL +PA+F + P E+
Sbjct: 185 GADGIMSAEGNLSDPAIFGREPEPGSEV 212
>gi|5834292|gb|AAD53896.1|AF176314_6 NifR3-like protein [Zymomonas mobilis subsp. mobilis ZM4]
Length = 344
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 150/290 (51%), Gaps = 24/290 (8%)
Query: 128 MSTPEDRPLIIQRTIFP-RLGSPRF----ILAPMVDASELPWRLLSRRYGSHLCYTPMVS 182
M++PE P I P ++GS R ILAPM ++LP+R + RRYGS L T M++
Sbjct: 1 MNSPEHNP--THNLISPIQIGSVRIDNPVILAPMTGVTDLPFRRIVRRYGSGLNVTEMIA 58
Query: 183 AHQFIADKKLRQEILMST--PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDG-IDINIGCP 239
+ I ++ RQ + ST P + P+ +Q G ++ E+AKL + IDIN+GCP
Sbjct: 59 SQAMI--RETRQSLQKSTWDPYEEPISVQLVGCTPDDMAESAKLNQDRGAAIIDINMGCP 116
Query: 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERA 297
G G+ L D L +++ + +AV +PV+ K+R+ D+N E AR+ +
Sbjct: 117 VRKVVSGDAGSALMRDLKLAASIIEATVKAVSLPVTLKMRMGWDLNSLNAPELARIAQDI 176
Query: 298 GCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVA 357
G Q++ VHGRT +Q + G A W + V+ A++IPVI NG+I L D + L Q+G
Sbjct: 177 GVQMVTVHGRTRNQ--LYKGHADWAFVRQVKDAVSIPVIVNGDINSLDDAKTALQQSGAD 234
Query: 358 GVMTAEGNLYNPALFT--------GQTRPAWELASEYLDLVAQYPVRLQY 399
G+M G+ P L + G+ A + +Y + Y L Y
Sbjct: 235 GIMVGRGSYGKPWLLSQLMQGLTDGEMEKAPSIDEQYRTITEHYDHMLSY 284
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 75 QLGSPRF----ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
Q+GS R ILAPM ++LP+R + RRYGS L T M+++ I ++ RQ + ST
Sbjct: 17 QIGSVRIDNPVILAPMTGVTDLPFRRIVRRYGSGLNVTEMIASQAMI--RETRQSLQKST 74
Query: 131 --PEDRPLIIQ 139
P + P+ +Q
Sbjct: 75 WDPYEEPISVQ 85
>gi|413919017|gb|AFW58949.1| hypothetical protein ZEAMMB73_913989 [Zea mays]
gi|413919018|gb|AFW58950.1| hypothetical protein ZEAMMB73_913989 [Zea mays]
Length = 420
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 149/290 (51%), Gaps = 21/290 (7%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--------- 200
+ +LAPMV LP+RLL+ YG+ + Y + H+F+ +++ E L +T
Sbjct: 106 KLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKFLKCERVTNESLGTTDFVEKGTDS 165
Query: 201 ------PEDRP-LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 253
P++R ++ Q +++ +AA++ IDIN+GCP+ + G GA L
Sbjct: 166 VVFRTCPQERGRVVFQMGTSNAVRALKAAQIVCRDVSAIDINMGCPKSFSLSGGMGAALL 225
Query: 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313
L+ +++++LR+ + V+CKIR+ TVE AR +E+ G LAVHGR + R
Sbjct: 226 SKPELIHDILTTLRRNLDTTVTCKIRLLNTPKDTVELARRIEKTGVPALAVHGRKIKDRP 285
Query: 314 MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ LA W+ I V AL+IPVIANG++ D + TG A VM A G ++N ++F
Sbjct: 286 RD--LAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGAASVMVARGAMWNASIFC 343
Query: 374 GQTRPAWE-LASEYLDLVAQYPVRLQYARGHVFNMCHHL--LTLPENSDV 420
+ + WE + EY+ + ++ + + M H L LPE V
Sbjct: 344 AKGKTPWEDVKREYVRKSILWDNDVKSTKHTLKEMIMHYSCLELPEGKGV 393
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 54 KGTNVVPKDCHSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSA 113
+G +P+ S+ D + +LAPMV LP+RLL+ YG+ + Y +
Sbjct: 80 RGPRFLPEQSRSALRHGDEVGMEYRDKLVLAPMVRVGTLPFRLLAAEYGADITYGEEIID 139
Query: 114 HQFIADKKLRQEILMST 130
H+F+ +++ E L +T
Sbjct: 140 HKFLKCERVTNESLGTT 156
>gi|115459590|ref|NP_001053395.1| Os04g0531300 [Oryza sativa Japonica Group]
gi|38346764|emb|CAD41143.2| OSJNBa0081C01.15 [Oryza sativa Japonica Group]
gi|113564966|dbj|BAF15309.1| Os04g0531300 [Oryza sativa Japonica Group]
gi|116312037|emb|CAJ86402.1| OSIGBa0125M19.5 [Oryza sativa Indica Group]
gi|125549126|gb|EAY94948.1| hypothetical protein OsI_16753 [Oryza sativa Indica Group]
gi|215737387|dbj|BAG96316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 319
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 153/305 (50%), Gaps = 25/305 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--------- 200
+ +LAPMV LP+RLL+ YG+ + Y + H+F+ +++ E L +T
Sbjct: 6 KLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKFLKCERVTNESLGTTDFLERGTDT 65
Query: 201 ------PEDRP-LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 253
P++R ++ Q +D+ +AA+L IDIN+GCP+ + G GA L
Sbjct: 66 VVFRTCPQERDRVVFQMGTSDAVRALKAAQLVCNDVAAIDINMGCPKSFSLSGGMGAALL 125
Query: 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313
L+ +++++LR+ + V+CKIR+ TVE AR +E+ G LAVHGR V R
Sbjct: 126 SKPELIHDILTTLRRNLDTTVTCKIRLLNTRQDTVELARRVEKIGVPALAVHGRKVKDRP 185
Query: 314 MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ A W+ I V AL+IPVIANG++ D + TG A VM A G ++N ++F
Sbjct: 186 RDP--AKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGAASVMVARGAMWNASIFC 243
Query: 374 GQTRPAWE-LASEYLDLVAQYPVRLQYARGHVFNMCHHL--LTLPENSDVRLLVGKTNHI 430
+ + WE + EY+ + L+ + + M H L PE V K + I
Sbjct: 244 PKGKTPWEDVKREYVRKSILWDNDLKSTKQTIKEMIMHYSCLEFPEGKG----VNKCDTI 299
Query: 431 KDLRK 435
DL K
Sbjct: 300 ADLAK 304
Score = 42.4 bits (98), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
+ +LAPMV LP+RLL+ YG+ + Y + H+F+ +++ E L +T
Sbjct: 6 KLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKFLKCERVTNESLGTT 56
>gi|195116601|ref|XP_002002842.1| GI17600 [Drosophila mojavensis]
gi|193913417|gb|EDW12284.1| GI17600 [Drosophila mojavensis]
Length = 397
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/328 (32%), Positives = 157/328 (47%), Gaps = 16/328 (4%)
Query: 128 MSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI 187
M P RP +F + APMV S+L +R L R+ G L +TPM+ A
Sbjct: 1 MELPRQRPHHDIGALFTDTQGFLRVSAPMVRYSKLEFRRLLRQNGVQLAFTPMMIADSIN 60
Query: 188 ADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGH 247
+K RQ + +D+PLI QF D+ A++L P+ DG+D+N GCPQ A
Sbjct: 61 NSEKARQNEFTTGLDDQPLIAQFAAKDALEFVTASQLIYPYVDGVDLNCGCPQGWAIAKG 120
Query: 248 YGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQ------DVNKTVEYARMLERAGC 299
YG L + +++ SLR+ + VS K+R+ VNKT++ A+ LE G
Sbjct: 121 YGCGLLRQPEQVRDIIQSLRRTLPTDFSVSVKMRLLNSSDNQTSVNKTIQLAQQLEYCGV 180
Query: 300 QLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359
L +HGRT Q+ L + E + V K+L IP+I NGN++ D QT AGV
Sbjct: 181 TFLTLHGRTPAQKHSKDTL-NVEAMAEVAKSLQIPLIVNGNVESYQDACELHKQTQAAGV 239
Query: 360 MTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNM--CHHLLTLPEN 417
M A G L NPALF ++L + + Q + + + GH N HH L+ N
Sbjct: 240 MAARGLLANPALFNSD----YQLETATPKVCVQQWLDIAESAGHNLNFQCFHHHLSFMWN 295
Query: 418 SDV-RLLVGKTNHIKDLRKAVDMLRERF 444
S + R L + N + + + L E +
Sbjct: 296 STMKRALRVQFNSLGSKDQVLQFLAEHY 323
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
+ APMV S+L +R L R+ G L +TPM+ A +K RQ + +D+PLI Q
Sbjct: 25 VSAPMVRYSKLEFRRLLRQNGVQLAFTPMMIADSINNSEKARQNEFTTGLDDQPLIAQ-- 82
Query: 142 IFPRLGSPRFILA-----PMVDASEL------PWRLLSRRYGSHLCYTP 179
F + F+ A P VD +L W +++ YG L P
Sbjct: 83 -FAAKDALEFVTASQLIYPYVDGVDLNCGCPQGW-AIAKGYGCGLLRQP 129
>gi|195345007|ref|XP_002039067.1| GM17321 [Drosophila sechellia]
gi|194134197|gb|EDW55713.1| GM17321 [Drosophila sechellia]
Length = 316
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 148/299 (49%), Gaps = 21/299 (7%)
Query: 128 MSTPEDRPLIIQRTIFPRLGSPRF-ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQF 186
M P+ RP +F S + APMV S+L +R L R G L +TPM+ +
Sbjct: 1 MHLPQQRPHHDIAALFAEAQSDFVRVSAPMVRYSKLEFRRLVRLNGVQLAFTPMMISDSI 60
Query: 187 IADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRG 246
+K RQ + +D+PLI QF D +A+L P+ DGID+N GCPQ A
Sbjct: 61 NNSEKARQNEFSTGADDQPLIAQFAAKDPTEFVTSAQLIYPYVDGIDLNCGCPQSWAMAK 120
Query: 247 HYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIY---QDVNKTVEYARMLERAGCQL 301
YG + L+ +V +R+ + VS K+R+ + + +T++ AR LE AG
Sbjct: 121 GYGCGMLRQPELVHQVVQEVRRTLPGDFSVSVKMRLLGGEESLQRTIDLARQLEHAGVTF 180
Query: 302 LAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361
L +HGRT Q+ L ++ VR++L IP+I NGN++ D QTG AGVM
Sbjct: 181 LTLHGRTPAQKHSKDTL-DIPAMSQVRQSLQIPLIVNGNVESYRDACDMHEQTGAAGVMA 239
Query: 362 AEGNLYNPALFT-----GQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMC-HHLLTL 414
A G L NPALF G+T P ++LD+ + AR ++ C HH LT
Sbjct: 240 ARGLLANPALFNSSYPEGKTTP-LSCVQQWLDIASA-------ARDNLLFQCFHHHLTF 290
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
+ APMV S+L +R L R G L +TPM+ + +K RQ + +D+PLI Q
Sbjct: 26 VSAPMVRYSKLEFRRLVRLNGVQLAFTPMMISDSINNSEKARQNEFSTGADDQPLIAQ-- 83
Query: 142 IFPRLGSPRFILA-----PMVDASEL------PWRLLSRRYGSHLCYTPMVSAHQFIADK 190
F F+ + P VD +L W +++ YG + P + HQ +
Sbjct: 84 -FAAKDPTEFVTSAQLIYPYVDGIDLNCGCPQSW-AMAKGYGCGMLRQPEL-VHQVV--- 137
Query: 191 KLRQEILMSTPED 203
QE+ + P D
Sbjct: 138 ---QEVRRTLPGD 147
>gi|254579030|ref|XP_002495501.1| ZYRO0B12826p [Zygosaccharomyces rouxii]
gi|238938391|emb|CAR26568.1| ZYRO0B12826p [Zygosaccharomyces rouxii]
Length = 348
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 160/323 (49%), Gaps = 20/323 (6%)
Query: 131 PEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK 190
P + PL I +T P I PMV S+LP+R + R+Y + + YTPM+ A +F+ +
Sbjct: 16 PHNDPLHIIKTRKATHKRPATIAGPMVRYSKLPFRQVCRQYDTDIVYTPMILAREFVRNP 75
Query: 191 KLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGA 250
R + D PL++Q N+ +L + ++ P+CDGI IN GCP R G
Sbjct: 76 HARLADFSTNSSDSPLMVQVGTNNVMDLLKFVEMVAPYCDGIGINCGCPIKEQVREGIGC 135
Query: 251 YLQDDWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308
L + LL ++V ++++ V + KIRI++D ++TV+ R L AG + +HGRT
Sbjct: 136 ALIYNRELLCSMVKAVKEKYGDLVRLETKIRIHEDWDQTVKLCRDLCSAGVDWITIHGRT 195
Query: 309 VDQRGMNTGLASWEHITAVRKAL---TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365
+ R +T A++E I V + +PV+ANG+ DV+ TG GVM G
Sbjct: 196 KNTRSSHT--ANFEAIRYVVDRIRDKQVPVVANGDCLQSEDVQKIAEITGADGVMAVRGV 253
Query: 366 LYNPALFTGQTRPAWELASEYLDLVAQY---PVRLQYARGHVFNMCHHLLTLPENSDV-R 421
L NPALF+G W + ++ P +L + HHL + EN +V R
Sbjct: 254 LSNPALFSGFKTCPWSCVEWFWYYTLEFGGLPYQL---------LQHHLYCMLENMEVPR 304
Query: 422 LLVGKTNHIKDLRKAVDMLRERF 444
L+ + +K + +D + F
Sbjct: 305 NLIKELMDVKGTAELLDWFGDHF 327
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P I PMV S+LP+R + R+Y + + YTPM+ A +F+ + R + D PL++
Sbjct: 34 PATIAGPMVRYSKLPFRQVCRQYDTDIVYTPMILAREFVRNPHARLADFSTNSSDSPLMV 93
Query: 139 QRTIFPRLGSPRFI--LAPMVDA 159
Q + +F+ +AP D
Sbjct: 94 QVGTNNVMDLLKFVEMVAPYCDG 116
>gi|313233300|emb|CBY24415.1| unnamed protein product [Oikopleura dioica]
Length = 355
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 143/280 (51%), Gaps = 22/280 (7%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE----ILMSTPEDRPL- 206
ILAPMV LP RLL G+ L YT + H+ + +K + T ED P+
Sbjct: 6 ILAPMVRIGTLPTRLLCLEEGADLVYTEEIIDHRLMDCRKFEHKNGLVEFKLTAEDNPVL 65
Query: 207 ----------IIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
I+Q D +AAKL + H G+D+N+GCP+ + +G GA +
Sbjct: 66 QTCAKEKEKVILQLGTADPNRAVKAAKLCQDHISGVDVNMGCPKAYSTKGGMGAAMLKTP 125
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
L +++ +L Q + +PV+CKIR + + +TVE+A+ +E+ G LA+HGR +R
Sbjct: 126 DLAESILKALVQELDIPVTCKIRCLKTLEETVEFAKRMEKTGIAALAIHGRQKTERSRAD 185
Query: 317 GLAS-WEHITAVRKALTIPVIANGN---IQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
S W I V K+L IPV+ANG I+ +D++ +TG AGV+ A ++NP++F
Sbjct: 186 PCRSLW--IAEVAKSLKIPVLANGGSGEIKSRSDIDEFQEKTGTAGVLVARAAMWNPSVF 243
Query: 373 TGQT-RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHL 411
R +E+ Y L +Y L+ + +V +M L
Sbjct: 244 NKDGPRHVFEVVKRYCKLCLEYDFALEVMKYNVLSMLRDL 283
>gi|50303445|ref|XP_451664.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640796|emb|CAH02057.1| KLLA0B02959p [Kluyveromyces lactis]
Length = 351
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 158/328 (48%), Gaps = 16/328 (4%)
Query: 130 TPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD 189
T ++ PL I +T P I PMV S+L +R R+Y + YTPM+ A +F+ +
Sbjct: 14 TKKNDPLHIIKTRSQTHCRPATIAGPMVRYSKLAFRQTCRQYDVDIVYTPMILAREFVRN 73
Query: 190 KKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 249
R + ED PLI+Q N+ +L + ++ P+CDGI IN GCP R G
Sbjct: 74 GHARMADFTTCDEDSPLIVQVGVNNVPDLLKFTEMVYPYCDGIGINCGCPIREQVREGIG 133
Query: 250 AYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307
+ L + LL ++V +++ + V + KIRI+ DV TV+ L AG + VHGR
Sbjct: 134 SALIYNGELLCDMVKAVKDKYRDSVRLETKIRIHDDVKDTVKLCDDLCEAGVDWITVHGR 193
Query: 308 TVDQR-GMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366
T R + L + + I K +P++ANG+ L D T V GVM G L
Sbjct: 194 TRTTRSSVPVNLDAIKFIRENMKYQDVPLVANGDCFTLNDCYRISEYTKVDGVMAVRGLL 253
Query: 367 YNPALFTGQTRPAWELASEYLDLVAQY---PVRLQYARGHVFNMCHHLLTLPENSDV-RL 422
NPALF G + W ++ Q+ P +L + HHL T+ EN + +L
Sbjct: 254 CNPALFDGYDKCPWGAVELFVHYAMQFGGLPYQL---------LQHHLYTMLENMGLDKL 304
Query: 423 LVGKTNHIKDLRKAVDMLRERFIDYHEG 450
L+ + IK+ +D L E F+ +G
Sbjct: 305 LLKELMEIKNTAHLIDWLDEMFVLKRKG 332
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P I PMV S+L +R R+Y + YTPM+ A +F+ + R + ED PLI+
Sbjct: 33 PATIAGPMVRYSKLAFRQTCRQYDVDIVYTPMILAREFVRNGHARMADFTTCDEDSPLIV 92
Query: 139 Q 139
Q
Sbjct: 93 Q 93
>gi|213403071|ref|XP_002172308.1| tRNA-dihydrouridine synthase [Schizosaccharomyces japonicus yFS275]
gi|212000355|gb|EEB06015.1| tRNA-dihydrouridine synthase [Schizosaccharomyces japonicus yFS275]
Length = 347
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/274 (33%), Positives = 137/274 (50%), Gaps = 5/274 (1%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
P FI APMV S+LP+R L R Y + + YTPM+ A +F+ + R + +DR L++
Sbjct: 20 PVFIAAPMVRYSKLPFRQLVRDYNADIVYTPMILAKEFLHPEG-RYFDFSTNEKDRSLVV 78
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
QF D L +A+++ P+ D I IN GCPQ A + G+ L + LV S++
Sbjct: 79 QFGVEDPVILAQASEIVAPYTDAIGINCGCPQPWAIQEGIGSALLKQPQKVHELVRSVKS 138
Query: 269 AVQVP--VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
A+ V KIR+ D+ KT + + ERAG + VHGR R ++ E I +
Sbjct: 139 ALGETFCVEVKIRLDNDLEKTRQLMQTAERAGADFITVHGRRRADR--SSFPVDLEAIRS 196
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEY 386
VR ++IPV+ANG++ L T GVM+A G + NPALF G T W ++
Sbjct: 197 VRPCVSIPVVANGDVNDLDTGLKIAEYTNTDGVMSARGLMENPALFAGYTSTPWGCVEKF 256
Query: 387 LDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDV 420
+ Y + Q H+ M + T E V
Sbjct: 257 VAYATGYSLNFQLFEHHLMTMMGKMTTKRERMQV 290
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 11/121 (9%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P FI APMV S+LP+R L R Y + + YTPM+ A +F+ + R + +DR L++
Sbjct: 20 PVFIAAPMVRYSKLPFRQLVRDYNADIVYTPMILAKEFLHPEG-RYFDFSTNEKDRSLVV 78
Query: 139 QRTIFP--RLGSPRFILAPMVDASEL------PWRLLSRRYGSHLCYTPMVSAHQFIADK 190
Q + L I+AP DA + PW + GS L P H+ +
Sbjct: 79 QFGVEDPVILAQASEIVAPYTDAIGINCGCPQPW-AIQEGIGSALLKQPQ-KVHELVRSV 136
Query: 191 K 191
K
Sbjct: 137 K 137
>gi|19075762|ref|NP_588262.1| tRNA dihydrouridine synthase Dus4 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74626875|sp|O74553.1|DUS4_SCHPO RecName: Full=tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+];
AltName: Full=tRNA-dihydrouridine synthase 4
gi|3560252|emb|CAA20719.1| tRNA dihydrouridine synthase Dus4 (predicted) [Schizosaccharomyces
pombe]
Length = 326
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 142/278 (51%), Gaps = 11/278 (3%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
P I APMV S+LP+R L R Y + + YTPM+ A +F+ K R + D LI+
Sbjct: 20 PVHIAAPMVRYSKLPFRQLVRDYNTDIVYTPMILAKEFLHPKG-RYFDFSTNDADASLIL 78
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
QF +D L +AA+L P+ DGI IN GCPQ A + G+ L D+ + LV +++
Sbjct: 79 QFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAIQEGIGSALLDEPEKVHKLVRAVKS 138
Query: 269 AV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
+ KIRI +D+NKT +++E++G ++ VHGRT R ++ + + I
Sbjct: 139 TLGESFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVHGRTRQDR--SSFPVNLDAIRE 196
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEY 386
VR + IPV+ANG+++ L T G+M+A G L NPALF G W +
Sbjct: 197 VRPCVQIPVVANGDVKSLRKGLEIAKYTETQGIMSARGLLENPALFAGYEETPWGCVERF 256
Query: 387 LDLVAQYPVRLQYARGHVFNMCHHL------LTLPENS 418
L Y + H+ M + +T+P++S
Sbjct: 257 LWYSTSYSLNFHLFYHHLTTMMGQMTTKRERMTIPKDS 294
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P I APMV S+LP+R L R Y + + YTPM+ A +F+ K R + D LI+
Sbjct: 20 PVHIAAPMVRYSKLPFRQLVRDYNTDIVYTPMILAKEFLHPKG-RYFDFSTNDADASLIL 78
Query: 139 Q 139
Q
Sbjct: 79 Q 79
>gi|449675240|ref|XP_002165230.2| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like [Hydra
magnipapillata]
Length = 433
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 171/326 (52%), Gaps = 28/326 (8%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST------- 200
S + ILAPMV LP+RLL+ RYG+ + YT + ++ I K++ ++L +T
Sbjct: 6 SNKIILAPMVRIGTLPFRLLALRYGADIVYTEEIIDYKMIECKRIENKLLDTTDFLLADG 65
Query: 201 --------PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 252
E L+ Q N+++ A++ E DGIDIN+GCP+ + +G GA L
Sbjct: 66 TVVFRTCKEEKGKLVFQMGTNNAERALSVAQMLEKDIDGIDINMGCPKEFSVKGGMGAAL 125
Query: 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR 312
+ +++ L Q + +PV+CKIRI ++ T+E A+++E G + +A+HGRT D+R
Sbjct: 126 LTQPDKVKQILTGLVQNLSIPVTCKIRILPQLSDTIELAKLIEATGVKAIAIHGRTKDER 185
Query: 313 GMNTGLASWEHITAVRKALTIPVIANG---NIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
++ ++I AV A+ IPVIANG +I+ ++ +TG + VM A +NP
Sbjct: 186 --SSSPCHNDYIKAVADAVNIPVIANGGSQDIKTYFNIAKFKEETGCSSVMIARSAQWNP 243
Query: 370 ALFTGQ-TRPAWELASEYLDLVAQYP---VRLQYARGHVF-NMCHHLLTLPENSDVRLL- 423
++F + P ++ EY+ + + ++Y +F N L ++ V L
Sbjct: 244 SVFRKEGILPLIDVIKEYIKVALIFDACFTNIKYVLCKMFGNTAGSELGKRLSASVNLQD 303
Query: 424 VGKTNHIKDLRKAVDMLRERFIDYHE 449
+ +T ++D R+ ++L+ER I E
Sbjct: 304 ICETFDLEDFRQ--NLLKEREIRRTE 327
>gi|194759368|ref|XP_001961921.1| GF14697 [Drosophila ananassae]
gi|190615618|gb|EDV31142.1| GF14697 [Drosophila ananassae]
Length = 395
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 108/327 (33%), Positives = 157/327 (48%), Gaps = 17/327 (5%)
Query: 128 MSTPEDRPLIIQRTIFPRLGSPRF--ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQ 185
M P+ RP +F P F + APMV S+L +R L R G L +TPM+ +
Sbjct: 1 MLLPQQRPHHDIAALFA--AQPEFLRVSAPMVRYSKLEFRRLVRLNGVQLAFTPMMISDS 58
Query: 186 FIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKR 245
+K RQ + P+D+PL+ QF D+ +A+L P+ DGID+N GCPQ A
Sbjct: 59 INNSEKARQNEFTTGPDDQPLVAQFAAKDATEFVTSAQLIYPYVDGIDLNCGCPQSWAMA 118
Query: 246 GHYGAYL--QDDWPLLTNLVSSLRQAVQVPVSCKIRIY---QDVNKTVEYARMLERAGCQ 300
YG L Q + VS K+R+ + +T+E AR LE+AG
Sbjct: 119 KGYGCGLLRQPEVVREVVQQVRRTLPSDFSVSVKMRLLGGESSLERTIELARQLEQAGAT 178
Query: 301 LLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVM 360
L +HGRT Q+ L ++ VR++L IP+I NGN++ AD +TG AGVM
Sbjct: 179 FLTLHGRTPAQKHSKDTL-DIGAMSEVRQSLRIPLIVNGNVESWADACELSEKTGAAGVM 237
Query: 361 TAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGH--VFNMCHHLLTLPENS 418
A G L NPALF A+ A+ Q + + A G +F HH LT ++
Sbjct: 238 AARGLLANPALFNS----AYPEATTTPSACVQQWLDIAEAAGENLLFQCFHHHLTFMWSA 293
Query: 419 DV-RLLVGKTNHIKDLRKAVDMLRERF 444
D+ R L + N + + +D L + +
Sbjct: 294 DMKRSLRVQFNSLATKSEVLDFLDDHY 320
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 17/114 (14%)
Query: 79 PRF--ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 136
P F + APMV S+L +R L R G L +TPM+ + +K RQ + P+D+PL
Sbjct: 20 PEFLRVSAPMVRYSKLEFRRLVRLNGVQLAFTPMMISDSINNSEKARQNEFTTGPDDQPL 79
Query: 137 IIQRTIFPRLGSPRFILA-----PMVDASEL------PWRLLSRRYGSHLCYTP 179
+ Q F + F+ + P VD +L W +++ YG L P
Sbjct: 80 VAQ---FAAKDATEFVTSAQLIYPYVDGIDLNCGCPQSW-AMAKGYGCGLLRQP 129
>gi|197119180|ref|YP_002139607.1| oxidoreductase NifR3 [Geobacter bemidjiensis Bem]
gi|197088540|gb|ACH39811.1| TIM barrel oxidoreductase NifR3 [Geobacter bemidjiensis Bem]
Length = 321
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/334 (31%), Positives = 164/334 (49%), Gaps = 44/334 (13%)
Query: 135 PLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ 194
PL+++ +F LAPM + LP R++SR G+ +T MVS + + +
Sbjct: 9 PLVLKNQLF---------LAPMAGITNLPMRIISREGGASFAFTEMVSVNGLTREGQKSF 59
Query: 195 EILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++L S+PEDRP+ +Q G+D + L EAA+L E + + IDIN+GCP G+ L
Sbjct: 60 DLLKSSPEDRPIGMQLFGDDPEMLAEAARLVEEYGELIDINMGCPVRKVVGTGAGSALMK 119
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIR---IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQ 311
D + +V S+R A ++P++ KIR + D + +E R+ + GC + +H R+ Q
Sbjct: 120 DPQKVGRIVRSVRAATKLPLTIKIRTGWVCGD-DTFLEVGRIAQEEGCDAVTLHPRSRAQ 178
Query: 312 RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371
M G A W I ++ AL+IPVI +G++ AD LA+TG VM A G + NP +
Sbjct: 179 --MFEGKADWSRIGELKSALSIPVIGSGDLFSAADAVGMLAETGCDSVMVARGAMGNPWI 236
Query: 372 F---------------TGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHL----L 412
F T Q R A ++ +L+L A++ R + M HL
Sbjct: 237 FREALSLLAGEEPAPPTVQERLA--VSRRHLELFAEFA----GGRVALMEMRKHLSWYSK 290
Query: 413 TLPENSDVRLLVGKTNHIKDLRKAVDMLRERFID 446
LP + R V + +L +A+ E F D
Sbjct: 291 GLPGAAQFRAAVNRIESAPELIRAM----EEFFD 320
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 95/234 (40%), Gaps = 31/234 (13%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ LAPM + LP R++SR G+ +T MVS + + + ++L S+PEDRP+ +Q
Sbjct: 15 QLFLAPMAGITNLPMRIISREGGASFAFTEMVSVNGLTREGQKSFDLLKSSPEDRPIGMQ 74
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYG---SHLCYTPMVSAHQFIADKKLRQEI 196
G +LA E L+ G + T SA K R
Sbjct: 75 -----LFGDDPEMLAEAARLVEEYGELIDINMGCPVRKVVGTGAGSALMKDPQKVGRIVR 129
Query: 197 LMSTPEDRPLIIQF-----CGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGA 250
+ PL I+ CG+D+ E ++A E CD + ++ P+ A+ A
Sbjct: 130 SVRAATKLPLTIKIRTGWVCGDDT--FLEVGRIAQEEGCDAVTLH---PRSRAQMFEGKA 184
Query: 251 YLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
DW + + L+ A+ +PV D+ + ML GC + V
Sbjct: 185 ----DW----SRIGELKSALSIPVIGS----GDLFSAADAVGMLAETGCDSVMV 226
>gi|212722480|ref|NP_001132459.1| uncharacterized protein LOC100193915 [Zea mays]
gi|194694448|gb|ACF81308.1| unknown [Zea mays]
Length = 320
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 148/292 (50%), Gaps = 25/292 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--------- 200
+ +LAPMV LP+RLL+ YG+ + Y + H+F+ +++ E L +T
Sbjct: 6 KLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKFLKCERVTNESLGTTDFVEKGTDS 65
Query: 201 ------PEDRPLIIQFCGNDSKNLTEAAKLAEPHC---DGIDINIGCPQMVAKRGHYGAY 251
P++R ++ G + N A K A+ C IDIN+GCP+ + G GA
Sbjct: 66 VVFRTCPQERGRVVFQMG--TSNAVRALKAAQIVCRDVSAIDINMGCPKSFSLSGGMGAA 123
Query: 252 LQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQ 311
L L+ +++++LR+ + V+CKIR+ TVE AR +E+ G LAVHGR +
Sbjct: 124 LLSKPELIHDILTTLRRNLDTTVTCKIRLLNTPKDTVELARRIEKTGVPALAVHGRKIKD 183
Query: 312 RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371
R + LA W+ I V AL+IPVIANG++ D + TG A VM A G ++N ++
Sbjct: 184 RPRD--LAKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGAASVMVARGAMWNASI 241
Query: 372 FTGQTRPAWE-LASEYLDLVAQYPVRLQYARGHVFNMCHHL--LTLPENSDV 420
F + + WE + EY+ + ++ + + M H L LPE V
Sbjct: 242 FCAKGKTPWEDVKREYVRKSILWDNDVKSTKHTLKEMIMHYSCLELPEGKGV 293
>gi|404253572|ref|ZP_10957540.1| tRNA-dihydrouridine synthase [Sphingomonas sp. PAMC 26621]
Length = 334
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 109/318 (34%), Positives = 156/318 (49%), Gaps = 27/318 (8%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
+ SP ILAPM +++P+R L RRYGS L T MV++ I ++ RQ I + P +
Sbjct: 16 IASP-VILAPMTGVTDMPFRTLVRRYGSGLNVTEMVASQAAI--RETRQSIQKAAWHPIE 72
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
P+ +Q G + EAAKL+E I DIN+GCP G G+ L D L +
Sbjct: 73 DPVSMQLVGCTPFEMGEAAKLSEDRGAAIVDINMGCPVRKVTNGDAGSALMRDLDLAAAI 132
Query: 263 VSSLRQAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320
+ + AV VPV+ K+R+ D+++ E A++ + GC+L+ VHGRT +Q M G A
Sbjct: 133 IKGVVDAVSVPVTLKMRMGWDLDRLNAPELAKIAQDLGCKLVTVHGRTRNQ--MYKGNAD 190
Query: 321 WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT------- 373
W I V++A+TIPVIANG+I + D E L Q+G GVM G P L
Sbjct: 191 WAFIRQVKEAVTIPVIANGDICSIEDAETALEQSGADGVMIGRGAYGRPWLLGQVMEWFA 250
Query: 374 -GQTRPAWELASEYLDLVAQYPVRL-QYARGHVFNMCH-----HLLTLPENSDVRLLVGK 426
G+ R L +Y + Y L Y NM + L +++ R K
Sbjct: 251 HGRRREDPSLEEQYTVIAEHYDAMLTHYGTETGVNMARKHIGWYTRGLHGSAEFR---NK 307
Query: 427 TNHIKDLRKAVDMLRERF 444
N I D + ML E +
Sbjct: 308 VNQIPDPKVVQAMLAEFY 325
>gi|326492876|dbj|BAJ90294.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526215|dbj|BAJ97124.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 320
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 148/290 (51%), Gaps = 21/290 (7%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--------- 200
+ +LAPMV A LP+RLL+ YG+ + Y + H+F+ +++ E L +T
Sbjct: 6 KLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTTDFLERGTDS 65
Query: 201 ------PEDRP-LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 253
P++R ++ Q +D+ +AA++ IDIN+GCP+ + G G+ L
Sbjct: 66 VVFRTCPQERDRVVFQMGTSDAVRALKAAEIVCNDVAAIDINMGCPKAFSVSGGMGSALL 125
Query: 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313
L+ +++++LR+ + PV+CKIR+ TVE AR +E+ G LAVHGR V R
Sbjct: 126 SKPELIHDILTTLRRNLNTPVTCKIRLLNTRQDTVELARRIEKCGVPALAVHGRKVKDRP 185
Query: 314 MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ A W+ I V AL+IPVIANG++ D + TG VM A G L+N ++F+
Sbjct: 186 RDP--AKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGATSVMAARGALWNASIFS 243
Query: 374 GQTRPAWE-LASEYLDLVAQYPVRLQYARGHVFNMCHHL--LTLPENSDV 420
+ WE EY+ + ++ + + + H L LPE V
Sbjct: 244 PNGKVPWEDFKREYVRKTILWDNCIKSTKTTLREIIMHYICLELPEGKGV 293
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
+ +LAPMV A LP+RLL+ YG+ + Y + H+F+ +++ E L +T
Sbjct: 6 KLVLAPMVRAGTLPFRLLAAEYGADITYGEEIIDHKFVHCQRVTNESLGTT 56
>gi|334142006|ref|YP_004535213.1| dihydrouridine synthase TIM-barrel protein nifR3 [Novosphingobium
sp. PP1Y]
gi|333940037|emb|CCA93395.1| dihydrouridine synthase TIM-barrel protein nifR3 [Novosphingobium
sp. PP1Y]
Length = 338
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 139/264 (52%), Gaps = 12/264 (4%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM S+LP+R + R +GS L T M+++ I + ++ + M + P+ +Q
Sbjct: 25 VLAPMTGVSDLPFRRMVRGFGSGLNVTEMIASPAAIRETRVSIQKAMWDKIEDPVSMQLV 84
Query: 212 GNDSKNLTEAAKLAEPHCDG-IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G + + + EAAKL E IDIN+GCP G G+ L D PL T L+ + +AV
Sbjct: 85 GCEPEQMAEAAKLVEDRGAAIIDINMGCPVRKVVNGDAGSALMRDVPLATRLIEATVKAV 144
Query: 271 QVPVSCKIRIY--QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+VPV+ K+R+ D E AR+ E G Q++ VHGRT +Q M G A W + +V+
Sbjct: 145 RVPVTVKMRMGWCHDSLNAPELARIAEDLGAQMITVHGRTRNQ--MYKGEADWAFVRSVK 202
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW--ELASEY 386
+A++IPVI NG+I + D A L Q+G G+M G+ P F GQ W + S
Sbjct: 203 EAVSIPVIVNGDICTIDDAAAALEQSGADGLMIGRGSYGRP-WFLGQVMQWWRGQPVSAD 261
Query: 387 LDLVAQYPVRLQYARGHVFNMCHH 410
++ QY + R H M H
Sbjct: 262 PNVAGQYEI----IRSHYEQMLEH 281
>gi|91201593|emb|CAJ74653.1| strongly similar to tRNA-dihydrouridine synthase [Candidatus
Kuenenia stuttgartiensis]
Length = 341
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 162/309 (52%), Gaps = 15/309 (4%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
ILAPM S++P+RL+ RR+G + YT +VS + + K ++L E+RP+ Q
Sbjct: 35 LILAPMAGFSDMPYRLICRRFGMSMSYTEVVSVSGIVWNNKKTFKLLDFKEEERPVTFQV 94
Query: 211 CGNDSKNLTEAAKLAEPHC-DGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
GND +TEA K E D IDIN+GC +A +G GA + ++ + ++L
Sbjct: 95 VGNDECQITEACKKIEQLGPDIIDINMGCSVSDIAGKGA-GAGMLKHPSKISKMFNNLTG 153
Query: 269 AVQVPVSCKIRIYQD--VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
++ VPV+ KIR+ D +E AR+LE G L+AVHGRT Q +G A W+ I
Sbjct: 154 SLSVPVTGKIRLGWDHKTRNYIEVARILEENGASLIAVHGRTRSQ--YFSGAADWDAIAE 211
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEY 386
V++++ IPVIANG+++ +AD+ +T GVM + +P +F + R SE
Sbjct: 212 VKQSVKIPVIANGDVRSVADIAEIKKRTACDGVMIGRAAIGHPWIFRYKDRENIS-GSEK 270
Query: 387 LDLVAQYPVRLQYARGHVFNM-------CHHLLTLPENSDVRLLVGKTNHIKDLRKAVDM 439
++++ + ++ GH + +++ LP+ +++R + ++ +D+ +
Sbjct: 271 IEMIRYHLDCMKEYYGHAIGVVLFRKHAVKYIVGLPKATELRPYIVRSKSAEDIISYIAA 330
Query: 440 LRERFIDYH 448
R+ Y
Sbjct: 331 HLNRYSKYE 339
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
ILAPM S++P+RL+ RR+G + YT +VS + + K ++L E+RP+ Q
Sbjct: 35 LILAPMAGFSDMPYRLICRRFGMSMSYTEVVSVSGIVWNNKKTFKLLDFKEEERPVTFQ 93
>gi|395493244|ref|ZP_10424823.1| nifR3 family TIM-barrel protein [Sphingomonas sp. PAMC 26617]
Length = 326
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 109/318 (34%), Positives = 155/318 (48%), Gaps = 27/318 (8%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
+ SP ILAPM +++P+R L RRYGS L T MV++ I ++ RQ I + P +
Sbjct: 8 IASP-VILAPMTGVTDMPFRTLVRRYGSGLNVTEMVASQAAI--RETRQSIQKAAWHPIE 64
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
P+ +Q G + EAAKL+E I DIN+GCP G G+ L D L +
Sbjct: 65 DPVSMQLVGCTPFEMGEAAKLSEDRGAAIVDINMGCPVRKVTNGDAGSALMRDLDLAAAI 124
Query: 263 VSSLRQAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320
+ + AV VPV+ K+R+ D+++ E A++ + GC+L+ VHGRT +Q M G A
Sbjct: 125 IKGVVDAVSVPVTLKMRMGWDLDRLNAPELAKIAQDLGCKLVTVHGRTRNQ--MYKGNAD 182
Query: 321 WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT------- 373
W I V+ A+TIPVIANG+I + D E L Q+G GVM G P L
Sbjct: 183 WAFIRRVKDAVTIPVIANGDICSIEDAETALEQSGANGVMIGRGAYGRPWLLGQVMEWFA 242
Query: 374 -GQTRPAWELASEYLDLVAQYPVRL-QYARGHVFNMCH-----HLLTLPENSDVRLLVGK 426
G+ R L +Y + Y L Y NM + L +++ R K
Sbjct: 243 YGRRREDPSLEEQYTVIAEHYDAMLTHYGTETGVNMARKHIGWYTRGLHGSAEFR---NK 299
Query: 427 TNHIKDLRKAVDMLRERF 444
N I D + ML E +
Sbjct: 300 VNQIPDPKVVQAMLAEFY 317
>gi|21227445|ref|NP_633367.1| NifR3-like protein [Methanosarcina mazei Go1]
gi|20905814|gb|AAM31039.1| NifR3-like protein [Methanosarcina mazei Go1]
Length = 323
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 123/227 (54%), Gaps = 4/227 (1%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLI 207
S +LAPM D + L +RLL RRYG+ L YT M++ + + + +S+ EDRP
Sbjct: 14 SGNLLLAPMADVTNLAFRLLCRRYGADLTYTEMINVDALLNESRKSFIKGLSSEEDRPFG 73
Query: 208 IQFCGNDSKNLTEAAKLAEPHC--DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
+Q G L AA E + ID+N+GCP G+ L + L+ +++
Sbjct: 74 VQLVGGCPDKLKRAALFIEEEYRPEIIDVNMGCPARCITGAGCGSALLNSPELVYSIILE 133
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
L +++ PVS KIR+ KT+E AR++E+AG + VHGRT Q M +G ++ E I
Sbjct: 134 LTESLDTPVSAKIRLLGREEKTLEIARLIEKAGASAVTVHGRTAAQ--MYSGNSNLEGIR 191
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
AV+ L+IPVIANG+++ E L TG G+M + NP +F
Sbjct: 192 AVKNELSIPVIANGDVKDEESAERTLELTGCDGLMIGRAAMGNPFIF 238
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 78 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLI 137
S +LAPM D + L +RLL RRYG+ L YT M++ + + + +S+ EDRP
Sbjct: 14 SGNLLLAPMADVTNLAFRLLCRRYGADLTYTEMINVDALLNESRKSFIKGLSSEEDRPFG 73
Query: 138 IQ 139
+Q
Sbjct: 74 VQ 75
>gi|195398221|ref|XP_002057721.1| GJ17945 [Drosophila virilis]
gi|194141375|gb|EDW57794.1| GJ17945 [Drosophila virilis]
Length = 399
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 103/329 (31%), Positives = 154/329 (46%), Gaps = 18/329 (5%)
Query: 128 MSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI 187
M P+ RP +F I APMV S+L +R L R+ G L +TPM+ +
Sbjct: 1 MELPKQRPHHDIGALFADAQDFVRISAPMVRYSKLEFRRLLRQNGVQLAFTPMMISDSVN 60
Query: 188 ADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGH 247
+K RQ + P+D+PLI QF D+ +A+L P+ DG+D+N GCPQ A
Sbjct: 61 NSEKARQNEFTTGPDDQPLIAQFAAKDAMEFVTSAQLVYPYVDGVDLNCGCPQGWAISKG 120
Query: 248 YGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQ------DVNKTVEYARMLERAGC 299
YG L + ++V LR+ + VS K+R+ Q + +T++ A+ LE G
Sbjct: 121 YGCGLLRQPEQVRDIVQCLRRTLPTDFSVSVKMRLLQSSDSQTSLQRTIQLAQQLEHCGV 180
Query: 300 QLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359
L +HGRT Q+ L + + V ++L IP+I NGN++ D A+T AGV
Sbjct: 181 TFLTLHGRTPSQKHSKDTL-NVAAMADVCQSLQIPLIVNGNVESFQDACELHARTHAAGV 239
Query: 360 MTAEGNLYNPALFTGQ----TRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLP 415
M A G L NPALF T ++LD+ LQ+ H HHL +
Sbjct: 240 MAARGLLANPALFNSDYPQATTTPKACVQQWLDIAQSAGDHLQFQCFH-----HHLSFMC 294
Query: 416 ENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
+ R L + N + + + L E +
Sbjct: 295 SSEMKRALRVQFNSLSSKSQVLQFLSEHY 323
Score = 48.5 bits (114), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 15/109 (13%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
I APMV S+L +R L R+ G L +TPM+ + +K RQ + P+D+PLI Q
Sbjct: 25 ISAPMVRYSKLEFRRLLRQNGVQLAFTPMMISDSVNNSEKARQNEFTTGPDDQPLIAQ-- 82
Query: 142 IFPRLGSPRFILA-----PMVDASEL------PWRLLSRRYGSHLCYTP 179
F + F+ + P VD +L W +S+ YG L P
Sbjct: 83 -FAAKDAMEFVTSAQLVYPYVDGVDLNCGCPQGW-AISKGYGCGLLRQP 129
>gi|254572950|ref|XP_002493584.1| Dihydrouridine synthase [Komagataella pastoris GS115]
gi|238033383|emb|CAY71405.1| Dihydrouridine synthase [Komagataella pastoris GS115]
gi|328354588|emb|CCA40985.1| potential tRNA dihydrouridine synthase similar to S. cerevisiae
DUS4 (YLR405W) [Komagataella pastoris CBS 7435]
Length = 352
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 131/271 (48%), Gaps = 4/271 (1%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLI 207
P I PMV S+LP+R L R Y L YTPM+ A +F+ +K R + D P I
Sbjct: 36 KPVTIAGPMVRYSKLPFRELVRFYNVDLVYTPMILAREFVRNKVARYSDFTTNIRDTPTI 95
Query: 208 IQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
+Q N+S +L + + DGI +N GCP R GA L + ++ +V ++
Sbjct: 96 VQIGCNNSVDLLRMVDMIHSYVDGISLNCGCPIKEQVREGIGAALMTEPEKVSQMVRVVK 155
Query: 268 QAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+ V + KIRI+ D+ +T+ + + ++ AG + VHGRT R ++ E I
Sbjct: 156 EKYGDSVCIETKIRIHNDIQETIRFVKQVQDAGVDYITVHGRTKTTR--SSKPVDLESIR 213
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
+++ +PVIANG+ + E L T GVM+ G L NP+LF+G + W
Sbjct: 214 IIKEVARVPVIANGDCVDVKSFEHILDVTKCDGVMSVRGLLENPSLFSGYNKTTWGCVER 273
Query: 386 YLDLVAQYPVRLQYARGHVFNMCHHLLTLPE 416
+ L Y + + + H+ M + T E
Sbjct: 274 FFSLSMHYGLPFRIIQHHLSCMTSQIFTKKE 304
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 78 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLI 137
P I PMV S+LP+R L R Y L YTPM+ A +F+ +K R + D P I
Sbjct: 36 KPVTIAGPMVRYSKLPFRELVRFYNVDLVYTPMILAREFVRNKVARYSDFTTNIRDTPTI 95
Query: 138 IQ 139
+Q
Sbjct: 96 VQ 97
>gi|401840063|gb|EJT42985.1| DUS4-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 401
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 133/260 (51%), Gaps = 3/260 (1%)
Query: 130 TPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD 189
T E PL I +T G P I PMV S+LP+R L R Y + + Y+PM+ A +++ +
Sbjct: 52 TKETDPLHIIKTRQRTHGRPATIAGPMVRYSKLPFRQLCREYDADIVYSPMILAREYVRN 111
Query: 190 KKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 249
+ R L + +D PLI+Q N+ +L + ++ P+CDG+ IN GCP R G
Sbjct: 112 EHARTSDLSTNDKDAPLIVQVGVNNVADLLKFVEMVAPYCDGVGINCGCPIKEQIREGIG 171
Query: 250 AYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307
L + LL +V +++ ++ + KIRI++ V+ TVE R L +G + +HGR
Sbjct: 172 CALIYNSELLCGMVRAVKDKYGDKLRIETKIRIHEKVDDTVELCRNLCDSGVDWITIHGR 231
Query: 308 TVDQRGMN-TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366
T R L + ++I +PVIANG+ +D+E TG +GVM G L
Sbjct: 232 TRRTRSSQPVNLDAIKYIIEKISDKNVPVIANGDCFKSSDLERITKYTGASGVMAVRGLL 291
Query: 367 YNPALFTGQTRPAWELASEY 386
NPALF G W ++
Sbjct: 292 SNPALFAGYDTCPWGCIEKF 311
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 12/149 (8%)
Query: 77 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 136
G P I PMV S+LP+R L R Y + + Y+PM+ A +++ ++ R L + +D PL
Sbjct: 69 GRPATIAGPMVRYSKLPFRQLCREYDADIVYSPMILAREYVRNEHARTSDLSTNDKDAPL 128
Query: 137 IIQRTIFPRLGSPRFI--LAPMVDASEL----PWRLLSRR-YGSHLCYTP-----MVSAH 184
I+Q + +F+ +AP D + P + R G L Y MV A
Sbjct: 129 IVQVGVNNVADLLKFVEMVAPYCDGVGINCGCPIKEQIREGIGCALIYNSELLCGMVRAV 188
Query: 185 QFIADKKLRQEILMSTPEDRPLIIQFCGN 213
+ KLR E + E ++ C N
Sbjct: 189 KDKYGDKLRIETKIRIHEKVDDTVELCRN 217
>gi|195434933|ref|XP_002065456.1| GK14658 [Drosophila willistoni]
gi|194161541|gb|EDW76442.1| GK14658 [Drosophila willistoni]
Length = 404
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/229 (36%), Positives = 122/229 (53%), Gaps = 8/229 (3%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+ +R L R+ G LC+TPM+ + +K RQ + +D+PL+ QF
Sbjct: 30 VSAPMVRYSKFEFRKLLRQNGVQLCFTPMMISESINNSEKARQNEFSTDQDDQPLVAQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV- 270
D+ +A+L P+ DGID+N GCPQ A YG L + ++V +R+ +
Sbjct: 90 AKDASEFVTSAQLIYPYVDGIDLNCGCPQSWAMAKGYGCGLLRQPEQVKDIVREVRRVLP 149
Query: 271 -QVPVSCKIRIY-----QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
VS K+R+ + +T++ AR LE G L +HGRT Q+ L + +
Sbjct: 150 TDFSVSVKMRLLGGSQETSLERTIDLARQLEHTGVTFLTLHGRTPAQKHSKDTL-NIPAM 208
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
V+K+L IP+I NGN++ D +QTG AGVM A G L NPALF
Sbjct: 209 NEVQKSLQIPLIVNGNVESWEDAIELQSQTGAAGVMAARGLLANPALFN 257
Score = 47.0 bits (110), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
+ APMV S+ +R L R+ G LC+TPM+ + +K RQ + +D+PL+ Q
Sbjct: 30 VSAPMVRYSKFEFRKLLRQNGVQLCFTPMMISESINNSEKARQNEFSTDQDDQPLVAQ-- 87
Query: 142 IFPRLGSPRFILA-----PMVDASEL------PWRLLSRRYGSHLCYTP 179
F + F+ + P VD +L W +++ YG L P
Sbjct: 88 -FAAKDASEFVTSAQLIYPYVDGIDLNCGCPQSW-AMAKGYGCGLLRQP 134
>gi|253700031|ref|YP_003021220.1| hypothetical protein GM21_1403 [Geobacter sp. M21]
gi|251774881|gb|ACT17462.1| TIM-barrel protein, nifR3 family [Geobacter sp. M21]
Length = 321
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 130/241 (53%), Gaps = 15/241 (6%)
Query: 135 PLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ 194
PL+++ +F LAPM + LP R++SR G+ +T MVS + + +
Sbjct: 9 PLVLKNQLF---------LAPMAGITNLPMRIVSREGGASFAFTEMVSVNGLTREGRKSF 59
Query: 195 EILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++L S EDRP+ +Q G+D + L EAA+L E H + IDIN+GCP G+ L
Sbjct: 60 DLLKSCAEDRPIGMQLFGDDPEMLAEAARLVEDHGELIDINMGCPVRKVVGTGAGSALMK 119
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIR---IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQ 311
D + +V S+R A ++P++ KIR + D + +E R+ + GC + +H R+ Q
Sbjct: 120 DPRKVGRIVRSVRAATRLPLTIKIRTGWVCGD-DTFLEVGRIAQEEGCDAVTLHPRSRAQ 178
Query: 312 RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371
M G A W I ++ L+IPVI +G++ ADV LA+TG VM A G + NP +
Sbjct: 179 --MFEGKADWSRIAELKSTLSIPVIGSGDLFSAADVAGMLAETGCDAVMVARGAMGNPWI 236
Query: 372 F 372
F
Sbjct: 237 F 237
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 94/234 (40%), Gaps = 31/234 (13%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ LAPM + LP R++SR G+ +T MVS + + + ++L S EDRP+ +Q
Sbjct: 15 QLFLAPMAGITNLPMRIVSREGGASFAFTEMVSVNGLTREGRKSFDLLKSCAEDRPIGMQ 74
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQ-FIADKKLRQEILM 198
G +LA E L+ G + A + D + I+
Sbjct: 75 -----LFGDDPEMLAEAARLVEDHGELIDINMGCPVRKVVGTGAGSALMKDPRKVGRIVR 129
Query: 199 S--TPEDRPLIIQF-----CGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGA 250
S PL I+ CG+D+ E ++A E CD + ++ P+ A+ A
Sbjct: 130 SVRAATRLPLTIKIRTGWVCGDDT--FLEVGRIAQEEGCDAVTLH---PRSRAQMFEGKA 184
Query: 251 YLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
DW + L S+L +PV D+ + A ML GC + V
Sbjct: 185 ----DWSRIAELKSTL----SIPVIGS----GDLFSAADVAGMLAETGCDAVMV 226
>gi|224541983|ref|ZP_03682522.1| hypothetical protein CATMIT_01156 [Catenibacterium mitsuokai DSM
15897]
gi|224525040|gb|EEF94145.1| TIM-barrel protein, nifR3 family [Catenibacterium mitsuokai DSM
15897]
Length = 325
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 150/290 (51%), Gaps = 15/290 (5%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
I+APM + + +R L + +G+ L + MVS + ++L ++ P+ +Q
Sbjct: 13 IIMAPMAGITNVAYRRLVKEFGAGLVVSEMVSDKALCYGNQKTIDMLAVGEDEHPMSMQI 72
Query: 211 CGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G + + + +AAK E H CD IDIN+GCP + H G+YL L ++V ++ +
Sbjct: 73 FGGEVETMVKAAKFVEEHSDCDIIDINMGCPVNKVLKAHAGSYLMQYPELAYDIVKAVVE 132
Query: 269 AVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV VPV+ K+RI D+ VE A+++E+AG +A+HGRT Q M G A W I
Sbjct: 133 AVNVPVTVKMRIGYDMKHINCVEMAQLMEKAGASAVAIHGRTRSQ--MYEGHADWSWIKK 190
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEY 386
V++A++IPVI NG+++ D + + +TG VM G L NP + R L
Sbjct: 191 VKEAVSIPVIGNGDVRTPEDAKRMMEETGCDAVMVGRGALGNPFVI---RRMVKYLEEGI 247
Query: 387 LDLVAQYPVRLQYARGHVFNMCHHLL-TLPENSDVRLLVGKTN-HIKDLR 434
L+ Y R+Q H H L+ T E + +R + G+ ++K LR
Sbjct: 248 LEEEPDYHARIQLCIDH----AHRLVKTEGEKNAIRQMRGQAPWYVKGLR 293
>gi|423342662|ref|ZP_17320376.1| hypothetical protein HMPREF1077_01806 [Parabacteroides johnsonii
CL02T12C29]
gi|409216917|gb|EKN09896.1| hypothetical protein HMPREF1077_01806 [Parabacteroides johnsonii
CL02T12C29]
Length = 343
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 109/344 (31%), Positives = 168/344 (48%), Gaps = 32/344 (9%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D +++ +RL+ +R+G+ + YT VSA I Q+ L E+RP
Sbjct: 8 LGERPVFLAPMEDVTDISFRLMCKRFGADMVYTEFVSADALIRSVNKTQQKLNVANEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D + EAA++ E H D +DIN GCP + VA +G GA + + PL+ ++
Sbjct: 68 VAIQIYGRDVPTMVEAAQICEAAHPDILDINFGCPVKRVAGKGA-GAGMLRNIPLMLDIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV +PV+ K R+ D + V+ A L+ G L++HGRT Q M TG A W
Sbjct: 127 REVVKAVNIPVTVKTRLGWDADNRIIVDLAEQLQDCGIAALSIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I V+K + IP+I NG++ + Q GV VM G++ P +F
Sbjct: 185 TLIGEVKKNPRMQIPIIGNGDVTSAEICKQRFEQYGVDAVMIGRGSIGRPWIFREVKHFL 244
Query: 373 -TGQTRPAWELASEYLDL----VAQYPVRLQYARGHVFNMCHHLLTLP------ENSDVR 421
TG+ PA E S YLD+ V Q RL RG + ++ HL P + R
Sbjct: 245 NTGELLPA-ESFSWYLDILKKQVEQSVARLDERRG-ILHIRRHLAATPLFKGIADFKQTR 302
Query: 422 LLVGKTNHIKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSSNH 465
+ + + ++ L +D + ++F H G P S ++
Sbjct: 303 VAMLRAETVEALFDILDSIPDKF---HTGSGFQSDPRVSESIDY 343
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LG LAPM D +++ +RL+ +R+G+ + YT VSA I Q+ L E+RP
Sbjct: 8 LGERPVFLAPMEDVTDISFRLMCKRFGADMVYTEFVSADALIRSVNKTQQKLNVANEERP 67
Query: 136 LIIQ 139
+ IQ
Sbjct: 68 VAIQ 71
>gi|356496040|ref|XP_003516878.1| PREDICTED: tRNA-dihydrouridine synthase 2-like isoform 1 [Glycine
max]
Length = 320
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 147/290 (50%), Gaps = 21/290 (7%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--------- 200
+ +LAPMV LP+RLL+ +YG+ + Y + H+ + + E++ ST
Sbjct: 6 KLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKMLKCDRQINELIGSTDFVEKGTKN 65
Query: 201 -------PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 253
E ++ Q +D+ A+L +DIN+GCP+ + G GA L
Sbjct: 66 VVFRTCDEEKDTVVFQIGTSDAVRALATAQLVCNDVAAVDINMGCPKSFSVSGGMGAALL 125
Query: 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313
L+ +++++LR+ + PV+CKIR+ + + TVE AR +E+ G LAVHGR V R
Sbjct: 126 SKPELIHDILTTLRRNLNTPVTCKIRLLKSPHDTVELARRIEKTGVSALAVHGRKVPDRP 185
Query: 314 MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ A W I V AL+IPVIANG++ D E + TG + VM A G L+N ++F+
Sbjct: 186 RDP--AKWNEIADVVSALSIPVIANGDVFEYDDFERIKSATGASSVMVARGALWNASMFS 243
Query: 374 GQTRPAWE-LASEYLDLVAQYPVRLQYARGHVFNMCHHL--LTLPENSDV 420
+ + ++E + EY+ + L+ + + M H L LPE V
Sbjct: 244 PEGKVSYEAVKREYIRKCILWDNDLKSTKHTLKEMIMHYSCLELPEGKAV 293
>gi|356496042|ref|XP_003516879.1| PREDICTED: tRNA-dihydrouridine synthase 2-like isoform 2 [Glycine
max]
Length = 321
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 147/290 (50%), Gaps = 21/290 (7%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--------- 200
+ +LAPMV LP+RLL+ +YG+ + Y + H+ + + E++ ST
Sbjct: 6 KLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKMLKCDRQINELIGSTDFVEKGTKN 65
Query: 201 -------PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 253
E ++ Q +D+ A+L +DIN+GCP+ + G GA L
Sbjct: 66 VVFRTCDEEKDTVVFQIGTSDAVRALATAQLVCNDVAAVDINMGCPKSFSVSGGMGAALL 125
Query: 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313
L+ +++++LR+ + PV+CKIR+ + + TVE AR +E+ G LAVHGR V R
Sbjct: 126 SKPELIHDILTTLRRNLNTPVTCKIRLLKSPHDTVELARRIEKTGVSALAVHGRKVPDRP 185
Query: 314 MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ A W I V AL+IPVIANG++ D E + TG + VM A G L+N ++F+
Sbjct: 186 RDP--AKWNEIADVVSALSIPVIANGDVFEYDDFERIKSATGASSVMVARGALWNASMFS 243
Query: 374 GQTRPAWE-LASEYLDLVAQYPVRLQYARGHVFNMCHHL--LTLPENSDV 420
+ + ++E + EY+ + L+ + + M H L LPE V
Sbjct: 244 PEGKVSYEAVKREYIRKCILWDNDLKSTKHTLKEMIMHYSCLELPEGKAV 293
>gi|359401662|ref|ZP_09194629.1| dihydrouridine synthase TIM-barrel protein nifR3 [Novosphingobium
pentaromativorans US6-1]
gi|357597002|gb|EHJ58753.1| dihydrouridine synthase TIM-barrel protein nifR3 [Novosphingobium
pentaromativorans US6-1]
Length = 338
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 137/264 (51%), Gaps = 12/264 (4%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM S+LP+R + R +GS L T M+++ I + ++ + M + P+ +Q
Sbjct: 25 VLAPMTGVSDLPFRRMVRGFGSGLNVTEMIASPAAIRETRVSIQKAMWDKIEDPVSMQLV 84
Query: 212 GNDSKNLTEAAKLAEPHCDG-IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G + + + EAAKL E IDIN+GCP G G+ L D PL T L+ + +AV
Sbjct: 85 GCEPEQMAEAAKLVEDRGAAIIDINMGCPVRKVVNGDAGSALMRDVPLATRLIEATVKAV 144
Query: 271 QVPVSCKIRIY--QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+VPV+ K+R+ D E AR+ E G Q++ VHGRT +Q M G A W + +V+
Sbjct: 145 RVPVTVKMRMGWCHDSLNAPELARIAEDLGAQMITVHGRTRNQ--MYKGEADWAFVRSVK 202
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW--ELASEY 386
A++IPVI NG+I + D L Q+G G+M G+ P F GQ W + S
Sbjct: 203 DAVSIPVIVNGDICTIDDAAVALEQSGADGLMIGRGSYGRP-WFLGQVMQWWRGQPVSAD 261
Query: 387 LDLVAQYPVRLQYARGHVFNMCHH 410
++ QY + R H M H
Sbjct: 262 PNVAGQYEI----IRSHYEQMLEH 281
>gi|148553172|ref|YP_001260754.1| nifR3 family TIM-barrel protein [Sphingomonas wittichii RW1]
gi|148498362|gb|ABQ66616.1| putative TIM-barrel protein, nifR3 family [Sphingomonas wittichii
RW1]
Length = 333
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 109/332 (32%), Positives = 162/332 (48%), Gaps = 26/332 (7%)
Query: 130 TPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD 189
TP RP+ I R+ SP ILAPM S+LP+R + R YGS L T M+++ I +
Sbjct: 2 TPRLRPIDIGPV---RIDSP-VILAPMTGVSDLPFRKVVRGYGSGLNVTEMIASQAAIRE 57
Query: 190 KKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDG-IDINIGCPQMVAKRGHY 248
+ + + P + P+ +Q G K + EAAKL++ IDIN+GCP G
Sbjct: 58 TRQSVQKALWDPAEEPVSMQLVGCTPKEMGEAAKLSQDRGAAIIDINMGCPVRKVVNGDA 117
Query: 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHG 306
G+ L L +V + AV+VPV+ K+R+ D + E AR+ E G +++ VHG
Sbjct: 118 GSALMRTPELAVEIVKATVAAVEVPVTLKMRMGWDHDSLNAPELARIAEDVGVKMITVHG 177
Query: 307 RTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366
RT Q M G A W I V++A++IPVI NG+I + D E L Q+G G+M G
Sbjct: 178 RTRCQ--MYKGSADWAFIRRVKEAVSIPVIVNGDICSIEDAETALDQSGADGLMIGRGAY 235
Query: 367 YNPALF--------TGQTRPAWELASEYLDLVAQYPVRLQ-YARGHVFNMCH-----HLL 412
P L TG+ RP + +Y ++A Y L+ Y + NM +
Sbjct: 236 GRPWLLSQVMHYLATGERRPDPTIEQQYHVILAHYHAMLELYGKEVGVNMARKHIGWYTK 295
Query: 413 TLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
L +++ R V N D + + ML E +
Sbjct: 296 GLAGSAEFRNAV---NQEPDAARVIAMLGEFY 324
Score = 40.8 bits (94), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 74 TQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPED 133
++ SP ILAPM S+LP+R + R YGS L T M+++ I + + + + P +
Sbjct: 13 VRIDSP-VILAPMTGVSDLPFRKVVRGYGSGLNVTEMIASQAAIRETRQSVQKALWDPAE 71
Query: 134 RPLIIQ 139
P+ +Q
Sbjct: 72 EPVSMQ 77
>gi|325292774|ref|YP_004278638.1| nitrogen regulation protein [Agrobacterium sp. H13-3]
gi|325060627|gb|ADY64318.1| nitrogen regulation protein [Agrobacterium sp. H13-3]
Length = 333
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 164/315 (52%), Gaps = 30/315 (9%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK-----KLRQEILMSTPEDR 204
R +LAPM ++LP+R L+ RYG+ L T MV++ + +A++ +L+ ++
Sbjct: 20 RAVLAPMSGVTDLPFRQLAWRYGAGLVVTEMVASRELVANRGESWARLKNAGMV------ 73
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
P ++Q G ++ + EAAK+A + GI DIN+GCP G+ G+ L D +L+
Sbjct: 74 PHMVQLAGREAHFMAEAAKIAADNGAGIIDINMGCPAKKVTGGYSGSALMRDPDHALSLI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ AV VPV+ K+R+ D N E AR + AG QL+ +HGRT Q G A+W
Sbjct: 134 EATVGAVDVPVTLKMRLGWDENTINAPEIARRAQAAGVQLITIHGRTRMQ--FYEGRANW 191
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT---AEGNLYNPALFTGQTRP 378
+ I AVR+ +++P+IANG+++ D L+++G VM A+G + PA+ G P
Sbjct: 192 DAIRAVREVISVPLIANGDVETAEDAREILSRSGADAVMVGRGAQGQPWLPAVLAGHAAP 251
Query: 379 A----WELASEYLDLVAQYPVR---LQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIK 431
++A E+ D++ ++ R L++AR H+ T +D K +
Sbjct: 252 QRADIADIAVEHYDMMLEFYGREAGLRHARKHLGWYLDRFATEIATTD----KAKIMTSR 307
Query: 432 DLRKAVDMLRERFID 446
D + D+LR D
Sbjct: 308 DTGEVADLLRSALCD 322
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK 120
R +LAPM ++LP+R L+ RYG+ L T MV++ + +A++
Sbjct: 20 RAVLAPMSGVTDLPFRQLAWRYGAGLVVTEMVASRELVANR 60
>gi|319936962|ref|ZP_08011372.1| transcriptional regulator [Coprobacillus sp. 29_1]
gi|319807898|gb|EFW04477.1| transcriptional regulator [Coprobacillus sp. 29_1]
Length = 335
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 123/224 (54%), Gaps = 6/224 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R ++APM + + +R + + +G+ L + MVS + E+L + P+ IQ
Sbjct: 11 RIVMAPMAGITNVAFRKIIKEFGAGLVVSEMVSDKALCYGNQKTIEMLKVDENEHPMSIQ 70
Query: 210 FCGNDSKNLTEAAKLAE--PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G D +++ AAK + +CD IDIN+GCP + H G+YL L+ ++V S+
Sbjct: 71 VFGGDVESMVTAAKFVDENSNCDIIDINMGCPVNKVLKAHAGSYLLQFPDLVYDIVKSVV 130
Query: 268 QAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+AV PV+ KIRI D + VE A+++ERAG +AVHGRT Q M G A W I
Sbjct: 131 EAVSKPVTVKIRIGYDFDSINCVEIAQLIERAGASAIAVHGRTRSQ--MYEGHADWSWIK 188
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
V++A++IPVI NG+++ D + L +TG VM L NP
Sbjct: 189 KVKEAVSIPVIGNGDVKTAKDAKRMLEETGCDAVMVGRAALGNP 232
>gi|242073810|ref|XP_002446841.1| hypothetical protein SORBIDRAFT_06g023500 [Sorghum bicolor]
gi|241938024|gb|EES11169.1| hypothetical protein SORBIDRAFT_06g023500 [Sorghum bicolor]
Length = 320
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 147/290 (50%), Gaps = 21/290 (7%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--------- 200
+ +LAPMV LP+RLL+ YG+ + Y + H+ + +++ E L +T
Sbjct: 6 KLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKLLKCERVTNESLGTTDFVEKGTDS 65
Query: 201 ------PEDRP-LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 253
PE+R ++ Q +++ +AA+L IDIN+GCP+ + G GA L
Sbjct: 66 VVFRTCPEERGRVVFQMGTSNAVRALKAAQLVCQDVTAIDINMGCPKSFSLSGGMGAALL 125
Query: 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313
L+ +++++LR+ + V+CKIR+ TVE AR +E+ G LAVHGR + R
Sbjct: 126 SKPELIHDILTTLRRNLDTTVTCKIRLLNTPKDTVELARRIEKTGVPALAVHGRKIKDRP 185
Query: 314 MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ A W+ I V AL+IPVIANG++ D + TG A +M A G ++N ++F
Sbjct: 186 RDP--AKWDEIADVVSALSIPVIANGDVFEYEDFKRIKDATGAASIMVARGAMWNASIFC 243
Query: 374 GQTRPAWE-LASEYLDLVAQYPVRLQYARGHVFNMCHHL--LTLPENSDV 420
+ + WE + EY+ + ++ + + M H L LPE V
Sbjct: 244 AKGKTPWEDVKREYVRKSILWDNDVKSTKHTLKEMIMHYSCLELPEGKGV 293
>gi|268576246|ref|XP_002643103.1| Hypothetical protein CBG23028 [Caenorhabditis briggsae]
Length = 279
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 114/218 (52%), Gaps = 6/218 (2%)
Query: 160 SELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLT 219
S L +R L R Y +CYTPM+ A FI +K R L D PLI+QF +D L
Sbjct: 2 SRLAFRQLVRLYDVDVCYTPMIYAKNFIESEKCRNSELSVCEGDSPLIVQFATDDPFVLA 61
Query: 220 EAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV---QVPVSC 276
EAA++ G+D+N GCP+ + +G+ L LL ++V R + VS
Sbjct: 62 EAAEMVYSCSSGVDLNCGCPKHDVRSKGFGSALLSKPELLADMVRQTRARISDENFSVSL 121
Query: 277 KIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI 336
KIR+ +++ KTV+ R E AG L VHGRT Q + E I V+ A+ +P+I
Sbjct: 122 KIRVNKEIEKTVDLCRKAESAGVTHLTVHGRTPSQHAEPIDI---EAIRLVKSAVKVPII 178
Query: 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG 374
ANG I L + +TGV G+M A G L NPALF G
Sbjct: 179 ANGGITNLQEAMNLAEKTGVDGIMAANGLLDNPALFAG 216
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%)
Query: 90 SELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
S L +R L R Y +CYTPM+ A FI +K R L D PLI+Q
Sbjct: 2 SRLAFRQLVRLYDVDVCYTPMIYAKNFIESEKCRNSELSVCEGDSPLIVQ 51
>gi|325189578|emb|CCA24064.1| tRNAdihydrouridine synthase putative [Albugo laibachii Nc14]
Length = 427
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/265 (33%), Positives = 139/265 (52%), Gaps = 20/265 (7%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL------- 197
RL LAPMV A LP RLLS RYG+ L Y+ + + IA +++ IL
Sbjct: 3 RLYENAVCLAPMVRAGTLPLRLLSLRYGADLVYSEEIIDKKIIATERIENPILNTVDFVS 62
Query: 198 ----------MSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGH 247
S E ++ Q +D +AA+ ID+N+GCP+ + +G
Sbjct: 63 VNNRDSVVFRTSKEEKDRVVFQMGTSDPILAIKAAQKVARDVAAIDVNMGCPKHFSIQGG 122
Query: 248 YGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307
GA L L +++ +L+Q +++PVSCKIR+ +D N T+E+ + +E+AG + VHGR
Sbjct: 123 MGAALLQKPQLAFDIIKALKQNLEIPVSCKIRVLEDTNATIEFVKKMEQAGADAIGVHGR 182
Query: 308 TVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367
+R + ASW+ I V A+++PV+ANG++ + C QTG++ + A G L
Sbjct: 183 QTHERPEDP--ASWDSIKPVVSAVSVPVLANGDLFTQTAIAKCREQTGLSSFLVARGALS 240
Query: 368 NPALFTGQTR-PAWELASEYLDLVA 391
NP++F + P E+ EYL L A
Sbjct: 241 NPSIFRKEGMLPQSEVVVEYLKLAA 265
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 83 LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL 127
LAPMV A LP RLLS RYG+ L Y+ + + IA +++ IL
Sbjct: 11 LAPMVRAGTLPLRLLSLRYGADLVYSEEIIDKKIIATERIENPIL 55
>gi|340374433|ref|XP_003385742.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Amphimedon
queenslandica]
Length = 451
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 145/293 (49%), Gaps = 27/293 (9%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP-------- 201
+ I+APMV LP RLL+ +YG+ + Y+ H + ++ ++ +
Sbjct: 6 KVIMAPMVRIGTLPSRLLALKYGADIVYSEETIDHSILKCRRFHNRLIGTVDFIEEGGRS 65
Query: 202 -------EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
E R +I Q +D EAAKL + GIDIN+GCP+ + +G GA L +
Sbjct: 66 IFRTCPLERRKIIFQMGTSDPARALEAAKLVKDDVAGIDINMGCPKGFSLKGGMGAALLE 125
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
+ ++++L Q + +PV+CKIRI V KT+E +++E G LAVHGRT ++R
Sbjct: 126 KPEKVREILTTLVQGLDIPVTCKIRILPSVEKTLELVKVIESTGVAALAVHGRTKEERS- 184
Query: 315 NTGLASWEHITAVRK---ALTIPVIANGN---IQCLADVEACLAQTGVAGVMTAEGNLYN 368
+S HI +R+ T+P+IANG I+ D A ++ T + VM A +N
Sbjct: 185 ----SSPVHIDVLRQIASIATVPIIANGGSDLIKSREDAAAFISNTNCSSVMIARAAQWN 240
Query: 369 PALF-TGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDV 420
P++F + P E+ EYL L +Y + + + H LT P + +
Sbjct: 241 PSIFRSSGPLPTEEVVKEYLKLAIEYNNPFANTKYCLAQIMHDRLTSPNGAKL 293
>gi|82617391|emb|CAI64302.1| dihydrouridine synthase like protein [uncultured archaeon]
Length = 318
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/224 (34%), Positives = 129/224 (57%), Gaps = 4/224 (1%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
LAPM + + L +R+L ++YG+ L Y+ M+SA+ + + + ++ +++P IQ
Sbjct: 12 LFLAPMANVTNLAFRMLCKKYGAALTYSEMISANAVVRQGEKTMQRGLTCEDEQPFCIQM 71
Query: 211 CGNDSKNLTEAAKLAEPHC--DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
GN + +TEAA + E ID+N+GCP + R G+ L + L+ ++VSSL
Sbjct: 72 FGNSTDTMTEAALILEETYRPAIIDVNMGCPAPLIVRQECGSALLNSPSLVHDIVSSLAD 131
Query: 269 AVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+ PVS KIR++ ++ KT+E AR +E AG + VHGRT +Q M +G +S E+ ++
Sbjct: 132 NISTPVSTKIRVFDNMEKTLEIARTIESAGACAITVHGRTREQ--MYSGTSSLEYAKRIK 189
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
K L+IPVIANG+I+ + L T G+M + +P +F
Sbjct: 190 KELSIPVIANGDIKDGESAKHALEYTECDGLMIGRAAIGHPFIF 233
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
LAPM + + L +R+L ++YG+ L Y+ M+SA+ + + + ++ +++P IQ
Sbjct: 12 LFLAPMANVTNLAFRMLCKKYGAALTYSEMISANAVVRQGEKTMQRGLTCEDEQPFCIQ 70
>gi|449663327|ref|XP_002167268.2| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like,
partial [Hydra magnipapillata]
Length = 132
Score = 142 bits (358), Expect = 4e-31, Method: Composition-based stats.
Identities = 60/117 (51%), Positives = 85/117 (72%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LGSP+++LAPMV+ SEL +R L R YG+ LCYTPM A F+ ++K R+ + + DRP
Sbjct: 16 LGSPKYVLAPMVEQSELAFRSLCREYGAQLCYTPMWHAALFVNNEKYRKAAIETAFHDRP 75
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
L+ QFC ND + EA LAEP+CDG+D+N+GCPQ++A RGHYG+YL ++ L+ +
Sbjct: 76 LLFQFCANDPQIFAEACALAEPYCDGVDLNLGCPQVIAARGHYGSYLMEELDLVEEI 132
Score = 73.2 bits (178), Expect = 3e-10, Method: Composition-based stats.
Identities = 32/64 (50%), Positives = 45/64 (70%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LGSP+++LAPMV+ SEL +R L R YG+ LCYTPM A F+ ++K R+ + + DRP
Sbjct: 16 LGSPKYVLAPMVEQSELAFRSLCREYGAQLCYTPMWHAALFVNNEKYRKAAIETAFHDRP 75
Query: 136 LIIQ 139
L+ Q
Sbjct: 76 LLFQ 79
>gi|154489885|ref|ZP_02030146.1| hypothetical protein PARMER_00114 [Parabacteroides merdae ATCC
43184]
gi|423346346|ref|ZP_17324034.1| hypothetical protein HMPREF1060_01706 [Parabacteroides merdae
CL03T12C32]
gi|423722902|ref|ZP_17697055.1| hypothetical protein HMPREF1078_01115 [Parabacteroides merdae
CL09T00C40]
gi|154089327|gb|EDN88371.1| TIM-barrel protein, nifR3 family [Parabacteroides merdae ATCC
43184]
gi|409221144|gb|EKN14097.1| hypothetical protein HMPREF1060_01706 [Parabacteroides merdae
CL03T12C32]
gi|409242175|gb|EKN34940.1| hypothetical protein HMPREF1078_01115 [Parabacteroides merdae
CL09T00C40]
Length = 343
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 148/288 (51%), Gaps = 23/288 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D +++ +RL+ +R+G+ + YT VSA I Q+ L E+RP
Sbjct: 8 LGERPVFLAPMEDVTDISFRLMCKRFGADMVYTEFVSADALIRSVNKTQQKLNVADEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D + EAA++ E H D +DIN GCP + VA +G GA + + PL+ ++
Sbjct: 68 VAIQIYGRDVPTMVEAAQICEAAHPDILDINFGCPVKRVAGKGA-GAGMLRNIPLMLDIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV +PV+ K R+ D + V+ A L+ G L++HGRT Q M TG A W
Sbjct: 127 REVVKAVNIPVTVKTRLGWDADNRIIVDLAEQLQDCGIAALSIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I V+ + IP+I NG++ + Q GV VM G++ P +F
Sbjct: 185 TLIGEVKNNPRIQIPIIGNGDVTSAEICKQRFEQYGVDAVMIGRGSIGRPWIFREVRHYL 244
Query: 373 -TGQTRPAWELASEYLDL----VAQYPVRLQYARGHVFNMCHHLLTLP 415
TG+T PA E S YLD+ V Q RL RG + ++ HL P
Sbjct: 245 DTGETLPA-ESFSWYLDILKKQVEQSVERLDERRG-ILHIRRHLAATP 290
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LG LAPM D +++ +RL+ +R+G+ + YT VSA I Q+ L E+RP
Sbjct: 8 LGERPVFLAPMEDVTDISFRLMCKRFGADMVYTEFVSADALIRSVNKTQQKLNVADEERP 67
Query: 136 LIIQ 139
+ IQ
Sbjct: 68 VAIQ 71
>gi|338707162|ref|YP_004661363.1| TIM-barrel protein, nifR3 family [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
gi|336293966|gb|AEI37073.1| TIM-barrel protein, nifR3 family [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
Length = 341
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 140/254 (55%), Gaps = 14/254 (5%)
Query: 128 MSTPEDRPLIIQRTIFPRLGSPRF----ILAPMVDASELPWRLLSRRYGSHLCYTPMVSA 183
M+ ED+ I R + +GS R ILAPM ++LP+R + RRYGS L T M+++
Sbjct: 1 MTNSEDKAAPI-RLLPINIGSVRIDNPVILAPMTGVTDLPFRSIVRRYGSGLNVTEMIAS 59
Query: 184 HQFIADKKLRQEILMST--PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDG-IDINIGCPQ 240
I ++ RQ + ST PE+ P+ +Q G ++++ E+AKL + IDIN+GCP
Sbjct: 60 QAMI--RETRQSLQKSTWDPEEEPISVQLVGCAAEDMAESAKLNQDRGAAIIDINMGCPV 117
Query: 241 MVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAG 298
G G+ L D L +++ + +AV +PV+ K+R+ D+N E AR+ E G
Sbjct: 118 RKVVSGDAGSALMRDLKLAASIIEATVKAVSLPVTLKMRMGWDLNSLNAPELARIAEDIG 177
Query: 299 CQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358
+++ VHGRT +Q + G A W + V+ A++IPVI NG+I L D + L+Q+ G
Sbjct: 178 IKMITVHGRTRNQ--LYKGHADWAFVKKVKDAVSIPVIVNGDICNLDDAVSALSQSHADG 235
Query: 359 VMTAEGNLYNPALF 372
+M G P L
Sbjct: 236 IMVGRGAYGKPWLL 249
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 75 QLGSPRF----ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
+GS R ILAPM ++LP+R + RRYGS L T M+++ I ++ RQ + ST
Sbjct: 17 NIGSVRIDNPVILAPMTGVTDLPFRSIVRRYGSGLNVTEMIASQAMI--RETRQSLQKST 74
Query: 131 --PEDRPLIIQ 139
PE+ P+ +Q
Sbjct: 75 WDPEEEPISVQ 85
>gi|449296646|gb|EMC92665.1| hypothetical protein BAUCODRAFT_27019 [Baudoinia compniacensis UAMH
10762]
Length = 395
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 150/317 (47%), Gaps = 26/317 (8%)
Query: 147 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR-- 204
G P + APMV S+LP+RLL Y + YTPM+ AH+FI R ++P +R
Sbjct: 69 GRPLHVSAPMVRYSKLPFRLLLHSYNVDIIYTPMILAHEFIRSPIARDSDFATSPLERQS 128
Query: 205 -----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 253
LI QF +D AA+L P DG+D+N GCPQ A + G L
Sbjct: 129 TRISHGSQQQHALIAQFASSDPTEFARAAELIAPWVDGVDLNCGCPQSWALKEGIGCSLM 188
Query: 254 DDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQ 311
L+ N++ + R + VS KIRI+ D++KTV + + +A + +HGRT Q
Sbjct: 189 SSPTLVANMIRAARARLGPSKSVSVKIRIHADLSKTVAWLDEVAKAEPTFITIHGRTRSQ 248
Query: 312 RGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
R ++ + I +R+ + +IPV+ NG+ L+DV A+TG GVM A G L NP
Sbjct: 249 R--SSTPPDYGAIRTLRERIPVSIPVVVNGDAYTLSDVTTIAAKTGADGVMAARGILENP 306
Query: 370 ALF--TGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT 427
A+F +G E +L + P+ HV M + + RL
Sbjct: 307 AMFSHSGVGGTPVECVQRFLGWAVRCPIPFPLVLHHVSEMTGRMKGFGKLERRRL----- 361
Query: 428 NHIKDLRKAVDMLRERF 444
+DL + VD + ++
Sbjct: 362 GACRDLIELVDFVDAKW 378
Score = 48.1 bits (113), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 77 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
G P + APMV S+LP+RLL Y + YTPM+ AH+FI R ++P +R
Sbjct: 69 GRPLHVSAPMVRYSKLPFRLLLHSYNVDIIYTPMILAHEFIRSPIARDSDFATSPLER 126
>gi|452977524|gb|EME77290.1| hypothetical protein MYCFIDRAFT_83236 [Pseudocercospora fijiensis
CIRAD86]
Length = 293
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 145/296 (48%), Gaps = 14/296 (4%)
Query: 156 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP----EDRPLIIQFC 211
MV S+LP+RLL +YG+ + YTPM+ AH+FI + R + P E + LI QF
Sbjct: 1 MVRYSKLPFRLLVSQYGADVVYTPMMLAHEFIRSQTARDSDFTTHPLERQEGKILIAQFA 60
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV- 270
++ + L AA L P DG+D+N GCPQ A + G L + + +V + +
Sbjct: 61 SSEPEELARAADLISPWVDGVDLNCGCPQSWAIKEGIGCSLMEQPEKVGEMVRVTKGRLI 120
Query: 271 --QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
VS KIRI +++ KTV++ +++ AG + VHGRT QR ++ + I +R
Sbjct: 121 GRGKSVSVKIRIDKNLQKTVKWLGVVQDAGVDYITVHGRTRSQR--SSTPPDYAAIGVLR 178
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ +P++ANG+ DV TG GVM A G + NP +F G P + L
Sbjct: 179 TFIRVPMVANGDAYSKEDVGRIARITGADGVMAARGLMENPTMFAGYPIPPERSVGDLLQ 238
Query: 389 LVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
V + P+ HV M + + + RL+ DL +D++ E++
Sbjct: 239 WVVRCPIPFPLVLHHVHEMTAKMEGMTKKEKRRLM-----QCGDLMDLIDLVEEKW 289
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 86 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
MV S+LP+RLL +YG+ + YTPM+ AH+FI + R + P +R
Sbjct: 1 MVRYSKLPFRLLVSQYGADVVYTPMMLAHEFIRSQTARDSDFTTHPLER 49
>gi|167519230|ref|XP_001743955.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777917|gb|EDQ91533.1| predicted protein [Monosiga brevicollis MX1]
Length = 328
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 123/237 (51%), Gaps = 4/237 (1%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S L +R R++G L YTPM+ A F + R+ + +DRPL+ QF
Sbjct: 26 VSAPMVRYSRLAFRRTVRKHGIDLAYTPMIVADSFTKSQWAREADFHTAEDDRPLVAQFA 85
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV- 270
N+ L A +L P+ D +N GCPQ A + G L + + +LV R AV
Sbjct: 86 ANNGPVLAHAVELMAPYADAFCLNCGCPQRWAIQDGLGCALTLNPDAMVDLVRHARAAVP 145
Query: 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA 330
PVS K+RI +TVE R E G ++VHGRT +R ++ + V+ +
Sbjct: 146 HHPVSVKVRIRDTAAETVELVRRAEAMGAAWISVHGRTPAERHQPV---HYDMLKLVKDS 202
Query: 331 LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYL 387
+++PV+ANG+I L D + +TG G+M A G L NP LF G + E+ ++L
Sbjct: 203 VSVPVVANGDIFTLKDADRVWNETGCDGIMAARGLLANPGLFEGGRYVSREVIGDFL 259
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
+ APMV S L +R R++G L YTPM+ A F + R+ + +DRPL+ Q
Sbjct: 26 VSAPMVRYSRLAFRRTVRKHGIDLAYTPMIVADSFTKSQWAREADFHTAEDDRPLVAQFA 85
Query: 142 I--FPRLGSPRFILAPMVDA 159
P L ++AP DA
Sbjct: 86 ANNGPVLAHAVELMAPYADA 105
>gi|399060981|ref|ZP_10745870.1| putative TIM-barrel protein, nifR3 family [Novosphingobium sp.
AP12]
gi|398036413|gb|EJL29624.1| putative TIM-barrel protein, nifR3 family [Novosphingobium sp.
AP12]
Length = 344
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 155/322 (48%), Gaps = 34/322 (10%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM S+LP+R + R +GS L T M+++ I + ++ + M + P+ +Q
Sbjct: 25 VLAPMTGVSDLPFRKMVRGFGSGLNVTEMIASPAAIRETRVSLQKAMWDVIEDPVSMQLV 84
Query: 212 GNDSKNLTEAAKLAEPHCDG-IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G + + + EAAKL E IDIN+GCP G G+ L PL T L+ + +AV
Sbjct: 85 GCEPEQMAEAAKLVEDRGAAIIDINMGCPVRKVVNGDAGSALMRQIPLATKLIEATVKAV 144
Query: 271 QVPVSCKIRIY--QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+VPV+ K+R+ D E AR+ E G Q++ VHGRT +Q M G A W + +V+
Sbjct: 145 KVPVTVKMRMGWCHDSLNAPELARIAEDLGAQMITVHGRTRNQ--MYKGEADWAFVRSVK 202
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+A++IPVI NG+I +AD L Q+G G+M G P F GQ W
Sbjct: 203 EAVSIPVIVNGDICTIADASKALEQSGADGLMIGRGAYGRP-WFLGQVMQWWRGTD---- 257
Query: 389 LVAQYPV---RLQYARGHVFNMCHHLLTLPENSDVRL-----------------LVGKTN 428
VA+ P + + R H +M H + ++ VR+ K N
Sbjct: 258 -VAEDPTIGEQYEIMRRHYDDMLEHYGS---DTGVRMARKHLGWYIKGVRGSAEFRNKVN 313
Query: 429 HIKDLRKAVDMLRERFIDYHEG 450
I D + + L E + Y +G
Sbjct: 314 FISDPDEVLRELAEFYAPYRDG 335
>gi|297568450|ref|YP_003689794.1| hypothetical protein [Desulfurivibrio alkaliphilus AHT2]
gi|296924365|gb|ADH85175.1| TIM-barrel protein, nifR3 family [Desulfurivibrio alkaliphilus
AHT2]
Length = 313
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 95/271 (35%), Positives = 143/271 (52%), Gaps = 18/271 (6%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
I AP+ S+L +RLL R YG+ LCY+ M+S H + + E+L + P +RP+I+Q
Sbjct: 17 LIAAPLAGFSDLAFRLLCREYGAGLCYSEMISCHGLVRQQPSTLELLATVPAERPVIMQL 76
Query: 211 CGNDSKNLTEAAK-LAEPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G + + + +AA L+ DGIDIN+GCP + V K+G GA L L +V+++ +
Sbjct: 77 FGAEPEVMGQAAAILSRLPIDGIDINMGCPVKKVVKKG-AGAALMRQPELAAAIVTAVVK 135
Query: 269 AVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
A ++PV+ KIR + + E+AR E G + VHGRT +G A I A
Sbjct: 136 ATELPVTVKIRTGWNHQRITAPEFARRCEDCGAAAITVHGRTWSDG--FSGRADQRLIAA 193
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF-----TGQTRP-AW 380
V++A+ +PVI NG++ C + A +A TG GVM G + P +F T T P
Sbjct: 194 VKQAVKVPVIGNGDVTCHQEAVAMMANTGCDGVMIGRGAIGAPWVFSPDFPTSPTLPRRL 253
Query: 381 ELASEYLDLVAQY-----PVRLQYARGHVFN 406
A +L+L+ QY P R+ G F
Sbjct: 254 AAARRHLELLQQYHPHHHPSRINNQIGRYFK 284
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
I AP+ S+L +RLL R YG+ LCY+ M+S H + + E+L + P +RP+I+Q
Sbjct: 17 LIAAPLAGFSDLAFRLLCREYGAGLCYSEMISCHGLVRQQPSTLELLATVPAERPVIMQ 75
>gi|156847371|ref|XP_001646570.1| hypothetical protein Kpol_1055p69 [Vanderwaltozyma polyspora DSM
70294]
gi|156117248|gb|EDO18712.1| hypothetical protein Kpol_1055p69 [Vanderwaltozyma polyspora DSM
70294]
Length = 346
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 102/327 (31%), Positives = 155/327 (47%), Gaps = 24/327 (7%)
Query: 130 TPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD 189
T E+ PL I +T I PMV S+LP+R + R Y + YTPM+ A +F+ +
Sbjct: 12 TNENDPLYIIKTRKKTHNRAATIAGPMVRYSKLPFRQVCRDYDVDIVYTPMILAREFVRN 71
Query: 190 KKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 249
R + D PLI+Q N+ +L + ++ P+CDGI IN GCP R G
Sbjct: 72 GHARLADFTTCSTDSPLIVQVGVNNVADLLKFVEMVSPYCDGIGINCGCPIKEQIREGIG 131
Query: 250 AYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307
L + LL ++VS+++Q +V + KIRI+ D+ +TVE + AG + +HGR
Sbjct: 132 CALIYNPELLASMVSAVKQKYGDKVRLETKIRIHDDLEQTVELCNKVCDAGVDWITIHGR 191
Query: 308 TVDQRGMN-TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366
T R L + ++I + K +PV+ANG+ D+ TG GVM G L
Sbjct: 192 TRTTRSSQPVNLDAIKYIISQIKGRNVPVVANGDCFVETDLAKISECTGADGVMAVRGLL 251
Query: 367 YNPALFT-------GQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSD 419
NPALF G W A E+ L P +L + HHL + EN
Sbjct: 252 ANPALFAKYDVCPWGCLEKFWYWAMEFSTL----PFQL---------LQHHLFCMLENMQ 298
Query: 420 VRL-LVGKTNHIKDLRKAVDMLRERFI 445
++ L+ + +K+ + +D + FI
Sbjct: 299 LQKPLLKEMMTLKNTVQLIDWFDKNFI 325
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 12/143 (8%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
I PMV S+LP+R + R Y + YTPM+ A +F+ + R + D PLI+Q
Sbjct: 34 IAGPMVRYSKLPFRQVCRDYDVDIVYTPMILAREFVRNGHARLADFTTCSTDSPLIVQVG 93
Query: 142 IFPRLGSPRFI--LAPMVDASEL----PWRLLSRR-YGSHLCYTP-----MVSAHQFIAD 189
+ +F+ ++P D + P + R G L Y P MVSA +
Sbjct: 94 VNNVADLLKFVEMVSPYCDGIGINCGCPIKEQIREGIGCALIYNPELLASMVSAVKQKYG 153
Query: 190 KKLRQEILMSTPEDRPLIIQFCG 212
K+R E + +D ++ C
Sbjct: 154 DKVRLETKIRIHDDLEQTVELCN 176
>gi|225389821|ref|ZP_03759545.1| hypothetical protein CLOSTASPAR_03569 [Clostridium asparagiforme
DSM 15981]
gi|225044131|gb|EEG54377.1| hypothetical protein CLOSTASPAR_03569 [Clostridium asparagiforme
DSM 15981]
Length = 319
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 157/313 (50%), Gaps = 28/313 (8%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM ++LP+RLL R G + T MVSA + K +E+L E+RP +Q
Sbjct: 15 ILAPMAGVTDLPFRLLCREQGCGMVVTEMVSAKAILYKNKNTKELLTVRSEERPAAVQLF 74
Query: 212 GNDSKNLTE-AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G+D + + E AA++ + D ID+N+GCP G+ L D ++S++ +AV
Sbjct: 75 GSDPEIMAEIAAQIEDGPYDVIDVNMGCPVPKIVNNGEGSALMKDPKRAEAVLSAMVRAV 134
Query: 271 QVPVSCKIR--IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+ PV+ K R + VE+A+M E G +AVHGRT +Q +G A W+ I V+
Sbjct: 135 KKPVTVKFRKGFNDESVNAVEFAKMAESCGVAAVAVHGRTREQ--YYSGTADWDIIRRVK 192
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRPA- 379
+A+ IPVI NG++ D L QTG G+M A G NP +F TG++ P
Sbjct: 193 EAVKIPVIGNGDVFTPEDAGRLLEQTGCDGIMVARGAKGNPWIFHRINHYLETGESLPGP 252
Query: 380 -----WELASEYLDLVAQYP---VRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIK 431
E+ + ++A Y V ++ R H M + L ++ +R + N ++
Sbjct: 253 SVQEIREMILRHSRMLADYKGERVAMREMRSH---MAWYTSGLAHSASIRR---EINGVE 306
Query: 432 DLRKAVDMLRERF 444
+ +D+L RF
Sbjct: 307 TMEGLIDLLDRRF 319
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 103/233 (44%), Gaps = 32/233 (13%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
ILAPM ++LP+RLL R G + T MVSA + K +E+L E+RP +Q
Sbjct: 15 ILAPMAGVTDLPFRLLCREQGCGMVVTEMVSAKAILYKNKNTKELLTVRSEERPAAVQ-- 72
Query: 142 IFPRLGSPRFILAPMVDASE-LPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQEI 196
GS I+A + E P+ ++ G C P + + D K + +
Sbjct: 73 ---LFGSDPEIMAEIAAQIEDGPYDVIDVNMG---CPVPKIVNNGEGSALMKDPKRAEAV 126
Query: 197 L--MSTPEDRPLIIQF---CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAY 251
L M +P+ ++F ++S N E AK+AE C + + + +Y
Sbjct: 127 LSAMVRAVKKPVTVKFRKGFNDESVNAVEFAKMAE-SCGVAAVAV---HGRTREQYYSGT 182
Query: 252 LQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
DW +++ +++AV++PV DV + R+LE+ GC + V
Sbjct: 183 A--DW----DIIRRVKEAVKIPVIGN----GDVFTPEDAGRLLEQTGCDGIMV 225
>gi|222054815|ref|YP_002537177.1| nifR3 family TIM-barrel protein [Geobacter daltonii FRC-32]
gi|221564104|gb|ACM20076.1| TIM-barrel protein, nifR3 family [Geobacter daltonii FRC-32]
Length = 326
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 126/224 (56%), Gaps = 4/224 (1%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
ILAPM + LP R+L+R G+ L +T M+S + + + K ++L P DRP+ IQ
Sbjct: 16 LILAPMAGLTNLPMRILARECGAALTFTEMISVNGLVREGKKTFDLLRRDPMDRPMGIQI 75
Query: 211 CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G+D + L E A+L E + + IDIN+GCP G+ L + + ++ ++R+A
Sbjct: 76 FGDDPQLLAEGARLVEQYGELIDINMGCPVRKVVGSGAGSALLREPAKVGMIIKAVRKAT 135
Query: 271 QVPVSCKIRI-YQDVNKT-VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+P++ KIR + + T +E R+ E G + +H R+ Q M G A W I ++
Sbjct: 136 SLPLTIKIRTGWGAADHTFLEIGRIAEAEGVDGVTLHPRSRAQ--MFEGHADWSRIRELK 193
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
+AL+IPVI +G+I ADV A + QTG GVM A G L NP LF
Sbjct: 194 EALSIPVIGSGDIFTAADVVAMIDQTGCDGVMVARGGLGNPWLF 237
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
ILAPM + LP R+L+R G+ L +T M+S + + + K ++L P DRP+ IQ
Sbjct: 16 LILAPMAGLTNLPMRILARECGAALTFTEMISVNGLVREGKKTFDLLRRDPMDRPMGIQ 74
>gi|147797460|emb|CAN64677.1| hypothetical protein VITISV_024917 [Vitis vinifera]
Length = 326
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 163/323 (50%), Gaps = 27/323 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIA-DKKLRQEI------------ 196
R +LAPMV LP+RLL+ +YG+ + Y + H+ I +++L ++I
Sbjct: 6 RLVLAPMVRVGTLPFRLLAAQYGADITYGEEIIDHKLIKCERRLNEDIGSIDFVEKGTHN 65
Query: 197 -LMST--PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 253
+ T E ++ Q ++++ AA++ +DIN+GCP+ + G GA L
Sbjct: 66 VVFRTCHEEKNRVVFQMGTSNAERALTAAQIVCKDVAAVDINMGCPKSFSISGGMGAALL 125
Query: 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313
L+ ++++ L++ + +PV+CKIR+ + +TVE A+ +E+ G LAVHGR + R
Sbjct: 126 TRPELIHDILTILKRNLDIPVTCKIRLLKSSQETVELAQQIEKTGVAALAVHGRRIADRP 185
Query: 314 MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ A W I V AL+IPVIANG++ D + TG + VM A G L+N ++F+
Sbjct: 186 RDP--AKWNEIADVVAALSIPVIANGDVFGYDDFQRIKVATGASSVMVARGALWNASVFS 243
Query: 374 GQTRPAWE-LASEYLDLVAQYPVRLQYARGHVFNMC--HHLLTLPENSDVRLLVGKTNHI 430
+ + WE + EY+ + ++ + + M H L LPE V K+ +
Sbjct: 244 PEGKVPWEDVKXEYIRKSILWDNDIKSTKHTLKEMIMHHSCLELPEGKAVI----KSETL 299
Query: 431 KDLRKAVDMLRERFIDYHEGRKL 453
DL K E++ + G +L
Sbjct: 300 ADLAKLYG--EEKYYQFVRGNRL 320
>gi|294011661|ref|YP_003545121.1| tRNA-dihydrouridine synthase [Sphingobium japonicum UT26S]
gi|292674991|dbj|BAI96509.1| tRNA-dihydrouridine synthase [Sphingobium japonicum UT26S]
Length = 339
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 104/311 (33%), Positives = 149/311 (47%), Gaps = 23/311 (7%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
+LAPM +++P+R L RRYGS L T M++ I + + + P + P+ +Q
Sbjct: 18 VVLAPMTGVTDMPFRTLVRRYGSGLNVTEMIATAAMIRETRQSLQKAAWHPLEEPVSMQL 77
Query: 211 CGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G + EAAKL A+ IDIN+GCP G G+ L D PL +L+ + +A
Sbjct: 78 AGCSPSEMAEAAKLNADRGAAIIDINMGCPVKKVVNGDAGSALMRDLPLAASLIEATVKA 137
Query: 270 VQVPVSCKIRIYQD--VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
V VPV+ K+R+ D E AR+ E G +L+ VHGRT Q M G A W + +V
Sbjct: 138 VDVPVTVKMRMGWDHASLNAPELARIAEDLGAKLITVHGRTRCQ--MYKGSADWAFVRSV 195
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRPA 379
+ A+++PVI NG+I + D E L Q+G GVM G P L TGQ
Sbjct: 196 KDAVSLPVIVNGDICSIDDAETALEQSGADGVMIGRGAYGRPWLIGQVMHWFRTGQRLAD 255
Query: 380 WELASEYLDLVAQYPVRLQYARGHV-FNMCH-----HLLTLPENSDVRLLVGKTNHIKDL 433
L +Y + Y L++ H NM + LP +++ R V N D
Sbjct: 256 PSLEEQYRVITEHYRAMLEHYDNHTGVNMARKHIGWYTKGLPGSAEFRNAV---NQEPDG 312
Query: 434 RKAVDMLRERF 444
+DML RF
Sbjct: 313 DVVLDML-ARF 322
>gi|170743988|ref|YP_001772643.1| NifR3 family TIM-barrel protein [Methylobacterium sp. 4-46]
gi|168198262|gb|ACA20209.1| TIM-barrel protein, nifR3 family [Methylobacterium sp. 4-46]
Length = 358
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 105/319 (32%), Positives = 159/319 (49%), Gaps = 33/319 (10%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI---ADKKLRQEILMSTPEDR 204
+P +LAP+ ++L R ++RR G+ + MV+A A+ +LR E R
Sbjct: 27 APGALLAPLSGVTDLHLRRIARRCGASAVVSEMVAAEDLARGSAEARLRAE----GEGVR 82
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
P ++Q G D + + E A+LAE + D ID+N+GCP G G+ L D L+
Sbjct: 83 PHVVQLAGCDPRWMAEGARLAEANGADVIDVNMGCPAKKVTGGEAGSALMRDLDHAARLL 142
Query: 264 SSLRQAVQVPVSCKIRI-YQDVNKTV-EYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+++R+AV VPV+ K+R+ + D ++ + AR E G + VHGRT Q G A W
Sbjct: 143 AAVREAVAVPVTVKMRLGWDDASRNAPDLARRAEALGLSAVTVHGRTRQQ--FYAGRADW 200
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP-------ALFTG 374
I AV +A++IPV+ANG++ LA+ ACLA++G A VM + P A G
Sbjct: 201 AAIRAVVEAVSIPVVANGDVGSLAEARACLAESGAAAVMIGRAAVGRPWLVGAVAAGLRG 260
Query: 375 QTRPAW------ELASE-YLDLVAQYPVRL--QYARGHVFNMCHHLLTLPENSDVRLLVG 425
PA +LA E Y L+A Y V + ++AR H+ H L RL+
Sbjct: 261 APAPALTRAAQADLAGEHYEGLLALYGVAMGVRHARKHLAAYADHAGGLAAGERARLVT- 319
Query: 426 KTNHIKDLRKAVDMLRERF 444
D +A+ +LR F
Sbjct: 320 ----TTDPAEALALLRRAF 334
>gi|402822222|ref|ZP_10871720.1| dihydrouridine synthase TIM-barrel protein nifR3 [Sphingomonas sp.
LH128]
gi|402264246|gb|EJU14111.1| dihydrouridine synthase TIM-barrel protein nifR3 [Sphingomonas sp.
LH128]
Length = 343
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 135/264 (51%), Gaps = 12/264 (4%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM S+LP+R + R +GS L T M+++ I + ++ + M + P+ +Q
Sbjct: 25 VLAPMTGVSDLPFRRMVRAFGSGLNVTEMIASPAAIRETRVSLQKAMWDKVEDPVSMQLV 84
Query: 212 GNDSKNLTEAAKLAEPHCDG-IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G D + + EAAKL E IDIN+GCP G G+ L PL T L+ + +AV
Sbjct: 85 GCDPEQMGEAAKLVEDRGAAIIDINMGCPVRKVVNGDAGSALMRQVPLATKLIEATVKAV 144
Query: 271 QVPVSCKIRIY--QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+VPV+ K+R+ D E AR+ E G +++ VHGRT +Q M G A W + V+
Sbjct: 145 KVPVTVKMRMGWCHDSLNAPELARIAEDLGAKMITVHGRTRNQ--MYKGEADWAFVRKVK 202
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW--ELASEY 386
A++IPVI NG+I + D L Q+G G+M G+ P F Q W E S
Sbjct: 203 DAVSIPVIVNGDICTVHDAAQALEQSGADGLMIGRGSYGRP-WFLSQVMQWWRGEAVSAD 261
Query: 387 LDLVAQYPVRLQYARGHVFNMCHH 410
D+ QY + R H +M H
Sbjct: 262 PDIAGQYDI----IRRHYEDMLDH 281
>gi|406890018|gb|EKD36037.1| hypothetical protein ACD_75C01667G0002 [uncultured bacterium]
Length = 312
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 155/294 (52%), Gaps = 14/294 (4%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
F+LAP+ + LP+RLL R+YG+ C + M+S H + ++ ++L S E+RP+ Q
Sbjct: 13 FVLAPLAGYTNLPFRLLCRKYGAAYCVSEMISCHGLVHREQNTLKMLASVAEERPVSFQL 72
Query: 211 CGNDSKNLTEAAKLAEPHC-DGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G D + + + A++ E + D IDIN+GCP + V KRG GA L D L ++ +
Sbjct: 73 FGADPEVMADGAEILESYRPDMIDINMGCPVKKVTKRGA-GAALMTDPRLAGKILKKIVA 131
Query: 269 AVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
V +PVS KIR +D + +A+M E G + VH RT Q G + +A I
Sbjct: 132 RVSIPVSIKIRSGKDSSSINAAAFAKMAEDCGVAAITVHARTWAQ-GFSGSIAPG-IIAD 189
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWEL---- 382
V++++++PVI NG++ L D +A TG GVM G L NP +F RP L
Sbjct: 190 VKRSVSLPVIGNGDVLSLEDGRRMMAATGCDGVMIGRGALGNPWIFRQSGRPEDVLEIVA 249
Query: 383 -ASEYLDLVAQYPVRLQYARGHVFN-MCHHLLTLPENSDVRLLVGKTNHIKDLR 434
A E+L L+ ++ + + G++ N MC + ++ R + ++ +LR
Sbjct: 250 AAREHLRLIEEF-LPAERLLGYIKNQMCRYFREFSGSAVERKKIFSMPNLDELR 302
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
F+LAP+ + LP+RLL R+YG+ C + M+S H + ++ ++L S E+RP+ Q
Sbjct: 13 FVLAPLAGYTNLPFRLLCRKYGAAYCVSEMISCHGLVHREQNTLKMLASVAEERPVSFQ 71
>gi|404493635|ref|YP_006717741.1| TIM barrel oxidoreductase NifR3 [Pelobacter carbinolicus DSM 2380]
gi|77545671|gb|ABA89233.1| TIM barrel oxidoreductase NifR3 [Pelobacter carbinolicus DSM 2380]
Length = 342
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 152/303 (50%), Gaps = 19/303 (6%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
+LAPM ++L RLL R YG L +T M+SA+ + +++L STP DRPL IQ
Sbjct: 31 ILLAPMAGITDLACRLLMRPYGIGLAFTEMISANGLVLGGDATRDLLASTPSDRPLGIQL 90
Query: 211 CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G + K L++A K E H D ID+NIGCP R G+ L + +++++R+A
Sbjct: 91 FGENPKYLSQACKQVESHGDLIDLNIGCPVKKVVRSGAGSALMQTPARVAQIIAAMRRAT 150
Query: 271 QVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+P++ KIR D + +E A + E+ G + +H RT Q +G A+W+ I ++
Sbjct: 151 HLPLTVKIRAGWDASHINFLEIAHIAEQEGVDAITLHPRTRSQG--FSGSANWDLIAELK 208
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP-------ALFTGQTRPAWE 381
+ TIPVI +G+I + L QTG VM G NP A+ GQT PA
Sbjct: 209 RRSTIPVIGSGDIFEAQYAQRMLQQTGCDAVMIGRGCYGNPWLARDILAMRQGQT-PAPV 267
Query: 382 LASEYLDLVAQYP---VRLQYARGHVFNMCHHLL----TLPENSDVRLLVGKTNHIKDLR 434
E D+ ++ +R R VF++ HL LP + R + + I+++R
Sbjct: 268 TPEERCDVALRHMELFLRFNDERKAVFDLRKHLCWYAKGLPGAAQFRSSINRAMSIEEMR 327
Query: 435 KAV 437
V
Sbjct: 328 TLV 330
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 111/239 (46%), Gaps = 43/239 (17%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
+LAPM ++L RLL R YG L +T M+SA+ + +++L STP DRPL IQ
Sbjct: 31 ILLAPMAGITDLACRLLMRPYGIGLAFTEMISANGLVLGGDATRDLLASTPSDRPLGIQ- 89
Query: 141 TIFPRLGSPRFIL---------APMVDAS-ELPWRLLSRR-YGSHLCYTPMVSAHQFIAD 189
+F +P+++ ++D + P + + R GS L TP A Q IA
Sbjct: 90 -LFGE--NPKYLSQACKQVESHGDLIDLNIGCPVKKVVRSGAGSALMQTPARVA-QIIA- 144
Query: 190 KKLRQEILMSTPEDRPLIIQF-CGNDSK--NLTEAAKLAEPHCDGIDINIGCPQMVAKRG 246
M PL ++ G D+ N E A +AE +G+D P+ +G
Sbjct: 145 -------AMRRATHLPLTVKIRAGWDASHINFLEIAHIAEQ--EGVDAITLHPR-TRSQG 194
Query: 247 HYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYA-RMLERAGCQLLAV 304
G+ +W +L++ L++ +PV I++ +YA RML++ GC + +
Sbjct: 195 FSGSA---NW----DLIAELKRRSTIPVIGSGDIFE-----AQYAQRMLQQTGCDAVMI 241
>gi|449451357|ref|XP_004143428.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like [Cucumis
sativus]
Length = 325
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 151/305 (49%), Gaps = 25/305 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP-------- 201
+F+LAPMV LP+RLL+ +YG+ + Y + H+ I ++ E + ST
Sbjct: 6 KFVLAPMVRVGTLPFRLLASQYGADITYGEEIIDHKMIKCERRLNEHVGSTDFVEKGTNN 65
Query: 202 --------EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 253
E + ++ Q +++ AA+L IDIN+GCP+ + G GA L
Sbjct: 66 VVFRTCSLERKHVVFQMGTSNAARALSAAQLVCQDVAAIDINMGCPKSFSISGGMGAALL 125
Query: 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313
+ L+ +++++LR+ + + ++CKIR+ TVE AR +E G L VHGR V R
Sbjct: 126 NKPDLIHDILTTLRRNLNILITCKIRLLNSPQDTVELARRIESTGVSALGVHGRRVADRP 185
Query: 314 MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ A W I V ALTIPVIANG+I D + TG + +M A G L+N ++F+
Sbjct: 186 RDP--AKWSEIADVVAALTIPVIANGDIFEYDDFQRIKVHTGASSMMVARGALWNASIFS 243
Query: 374 GQTRPAWE-LASEYLDLVAQYPVRLQYARGHVFNMC--HHLLTLPENSDVRLLVGKTNHI 430
+ + WE + EY+ + ++ + + M H L LPE V K+ +
Sbjct: 244 PEGKLPWEDVKREYVRKSILWDNDIKSTKYTLKEMIMHHSCLELPEGK----AVIKSESL 299
Query: 431 KDLRK 435
DL K
Sbjct: 300 ADLAK 304
>gi|255576019|ref|XP_002528905.1| tRNA-dihydrouridine synthase, putative [Ricinus communis]
gi|223531659|gb|EEF33485.1| tRNA-dihydrouridine synthase, putative [Ricinus communis]
Length = 330
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 143/290 (49%), Gaps = 21/290 (7%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--------- 200
+ +LAPMV LP+RLL+ YG+ + Y + H+ + ++ E + T
Sbjct: 6 KLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKLLKCERKVNEYIGCTDFVEKGTEN 65
Query: 201 -------PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 253
E ++ Q +D+ AA++ IDIN+GCP+ + G GA L
Sbjct: 66 VVFRTCNEEKNRVVFQMGTSDAVRALTAAQMVCKDVAAIDINMGCPKSFSISGGMGAALL 125
Query: 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313
L+ +++++L++ + PV+CKIR+ + TVE AR +E+ G LAVHGR V R
Sbjct: 126 TKPELIHDILTTLKRNLDSPVTCKIRLLKSPQDTVELARRIEKTGVSALAVHGRKVADRP 185
Query: 314 MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ A W I + L+IPVIANG++ D E A TG + VM A G L+N ++F+
Sbjct: 186 RDP--AKWSEIADIVSTLSIPVIANGDVFDYGDFERIKAATGASSVMVARGALWNASIFS 243
Query: 374 GQTRPAWE-LASEYLDLVAQYPVRLQYARGHVFNMCHHL--LTLPENSDV 420
+ + WE + EY+ + ++ + + M H L LPE V
Sbjct: 244 PKGKVHWEDVKREYVRKSILWDNDVKSTKHTLKEMIMHYSCLELPEGKGV 293
>gi|218258330|ref|ZP_03474732.1| hypothetical protein PRABACTJOHN_00387 [Parabacteroides johnsonii
DSM 18315]
gi|218225570|gb|EEC98220.1| hypothetical protein PRABACTJOHN_00387 [Parabacteroides johnsonii
DSM 18315]
Length = 343
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/344 (31%), Positives = 167/344 (48%), Gaps = 32/344 (9%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D +++ +RL+ +R+G+ + YT VSA I Q+ L E+RP
Sbjct: 8 LGERPVFLAPMEDVTDVSFRLMCKRFGADMVYTEFVSADALIRSVNKTQQKLNVANEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D + EAA++ E H D +DIN GCP + VA +G GA + + L+ ++
Sbjct: 68 VAIQIYGRDVPTMVEAAQICEAAHPDILDINFGCPVKRVAGKGA-GAGMLRNISLMLDIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV +PV+ K R+ D + V+ A L+ G L++HGRT Q M TG A W
Sbjct: 127 REVVKAVNIPVTVKTRLGWDADNRIIVDLAEQLQDCGIAALSIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I V+K + IP+I NG++ + Q GV VM G++ P +F
Sbjct: 185 TLIGEVKKNPRMQIPIIGNGDVTSAEICKQRFEQYGVDAVMIGRGSIGRPWIFREVKHFL 244
Query: 373 -TGQTRPAWELASEYLDL----VAQYPVRLQYARGHVFNMCHHLLTLP------ENSDVR 421
TG+ PA E S YLD+ V Q RL RG + ++ HL P + R
Sbjct: 245 NTGELLPA-ESFSWYLDILKKQVEQSVARLDERRG-ILHIRRHLAATPLFKGIADFKQTR 302
Query: 422 LLVGKTNHIKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSSNH 465
+ + + ++ L +D + ++F H G P S ++
Sbjct: 303 VAMLRAETVEALFDILDSIPDKF---HTGSGFQSDPRVSESIDY 343
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LG LAPM D +++ +RL+ +R+G+ + YT VSA I Q+ L E+RP
Sbjct: 8 LGERPVFLAPMEDVTDVSFRLMCKRFGADMVYTEFVSADALIRSVNKTQQKLNVANEERP 67
Query: 136 LIIQ 139
+ IQ
Sbjct: 68 VAIQ 71
>gi|301615800|ref|XP_002937358.1| PREDICTED: hypothetical protein LOC100487204 [Xenopus (Silurana)
tropicalis]
Length = 1161
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/95 (64%), Positives = 76/95 (80%)
Query: 268 QAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
Q + VPV+CKIR++ ++ KTVEYA+MLE+AGCQLL VHGRT +Q+G TG+ASWEHI AV
Sbjct: 607 QKLSVPVTCKIRVFPEIEKTVEYAKMLEKAGCQLLTVHGRTKEQKGPLTGIASWEHIKAV 666
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362
R A+ IPV ANGNIQ L D E C+ +T V GVM+A
Sbjct: 667 RNAVNIPVFANGNIQYLNDAERCMRETAVQGVMSA 701
>gi|356526723|ref|XP_003531966.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Glycine max]
Length = 320
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 148/290 (51%), Gaps = 21/290 (7%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--------- 200
+ +LAPMV LP+RLL+ +YG+ + Y + H+ + ++ E++ ST
Sbjct: 6 KLVLAPMVRVGTLPFRLLAAQYGADITYCEEIIDHKMLKCERRINELIGSTDFVEKGTNN 65
Query: 201 -------PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 253
E ++ Q +D+ A+L +DIN+GCP+ + G GA L
Sbjct: 66 VVFRTCDEEKDRVVFQIGTSDAVRALTTAQLVCNDVAAVDINMGCPKSFSVSGGMGAALL 125
Query: 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313
L+ +++++L++ + PV+CKIR+ + + TVE AR +E+ G LAVHGR V R
Sbjct: 126 SKPELIHDILTTLKRNLNTPVTCKIRLLKSPHDTVELARRIEKTGVSALAVHGRKVPDRP 185
Query: 314 MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ A W I V AL+IPVI NG++ DVE + TG + VM A G L+N ++F+
Sbjct: 186 RDP--AKWNEIADVVSALSIPVIENGDVFENDDVERIKSATGASSVMVARGALWNASMFS 243
Query: 374 GQTRPAWE-LASEYLDLVAQYPVRLQYARGHVFNMCHHL--LTLPENSDV 420
+ + ++E + EY+ + ++ + + M H L LPE V
Sbjct: 244 PEGKVSYEAVKREYIRKCILWDNDIKSTKHTLKEMIIHYSCLELPEGKAV 293
>gi|51894293|ref|YP_076984.1| transcriptional regulator [Symbiobacterium thermophilum IAM 14863]
gi|51857982|dbj|BAD42140.1| putative transcriptional regulator [Symbiobacterium thermophilum
IAM 14863]
Length = 345
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/305 (33%), Positives = 149/305 (48%), Gaps = 25/305 (8%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
LAPM + P+R L + +G L T VS + D K +E++ P++RP +Q
Sbjct: 23 LALAPMAGVTNWPFRRLCKEHGCGLVVTEFVSDKALLYDSKRTREMIRLLPDERPAGVQL 82
Query: 211 CGNDSKNLTEAA----KLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSL 266
G D + AA +L +P D IDIN+GCP +G G+ L + L +V +
Sbjct: 83 FGADPDTMARAAARVVELEQP--DLIDINMGCPAPKVTKGRGGSSLLKEPELAQEIVRRV 140
Query: 267 RQAVQ-VPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
QAV PV+ K+RI D VE A+ +E AG +++ VHGRT +Q +G A W
Sbjct: 141 VQAVAPTPVTVKMRIGWDSRSINAVEVAKRVEEAGARMITVHGRTKEQH--YSGRADWGV 198
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQ 375
I AV +A++IPV+ NG+I + EA L +GVAG+ G L NP +F TG+
Sbjct: 199 IAAVARAVSIPVLGNGDIADPREAEARLRTSGVAGLAVGRGALGNPWIFSRTLHYLETGE 258
Query: 376 ------TRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNH 429
R E A +LDL+ +Y R + +L L ++ VR V +
Sbjct: 259 LLPEPGVRERVETALRHLDLMIEYKGEFLAVREMRKHAAWYLKGLHGSAGVRAAVNEAER 318
Query: 430 IKDLR 434
DLR
Sbjct: 319 ADDLR 323
Score = 38.9 bits (89), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
LAPM + P+R L + +G L T VS + D K +E++ P++RP +Q
Sbjct: 23 LALAPMAGVTNWPFRRLCKEHGCGLVVTEFVSDKALLYDSKRTREMIRLLPDERPAGVQ 81
>gi|444314569|ref|XP_004177942.1| hypothetical protein TBLA_0A06320 [Tetrapisispora blattae CBS 6284]
gi|387510981|emb|CCH58423.1| hypothetical protein TBLA_0A06320 [Tetrapisispora blattae CBS 6284]
Length = 349
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 154/321 (47%), Gaps = 13/321 (4%)
Query: 132 EDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK 191
E+ PL I ++ P I PMV S+LP+R R Y + YTPM+ A +F+ +K
Sbjct: 12 ENDPLYIIQSRKTTHNRPATIAGPMVRYSKLPFRQTCRDYSVDIVYTPMILAREFVRNKN 71
Query: 192 LRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAY 251
R + +D PLI+Q N+ ++ + A + P+CDGI IN GCP R G
Sbjct: 72 ARLSDFSTNSKDTPLIVQVGVNNVSDILKFADMVAPYCDGIGINCGCPIKEQVREGIGCA 131
Query: 252 LQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309
L + L+ +LV ++++ ++ + KIRI+ D+N+T+E + + +G + +HGRT
Sbjct: 132 LIYNPDLICSLVKAVKEKYHDKLRLETKIRIHDDLNQTIELCKKIIDSGADWITIHGRTR 191
Query: 310 DQRGMN-TGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366
R L + + ITA K PV+ANG+ D+ T VM+ G L
Sbjct: 192 TTRSSTPVNLEAIKTITAAIKDYKPNYPVVANGDCFQYKDLFEISKITNTDAVMSVRGVL 251
Query: 367 YNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMC-HHLLTLPENSDV-RLLV 424
NP+LF + W +++ +Y G F + HHL + EN + + L+
Sbjct: 252 ANPSLFENHLKCPWGCIEIFINW------SFEYNNGIPFQLFQHHLFCMMENMMIPKHLI 305
Query: 425 GKTNHIKDLRKAVDMLRERFI 445
+ + + +D + E FI
Sbjct: 306 KQLMETRTYSQLIDWIDETFI 326
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 12/150 (8%)
Query: 74 TQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPED 133
T P I PMV S+LP+R R Y + YTPM+ A +F+ +K R + +D
Sbjct: 24 TTHNRPATIAGPMVRYSKLPFRQTCRDYSVDIVYTPMILAREFVRNKNARLSDFSTNSKD 83
Query: 134 RPLIIQRTIFPRLGSPRF--ILAPMVDASEL----PWRLLSRR-YGSHLCYTP-----MV 181
PLI+Q + +F ++AP D + P + R G L Y P +V
Sbjct: 84 TPLIVQVGVNNVSDILKFADMVAPYCDGIGINCGCPIKEQVREGIGCALIYNPDLICSLV 143
Query: 182 SAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
A + KLR E + +D I+ C
Sbjct: 144 KAVKEKYHDKLRLETKIRIHDDLNQTIELC 173
>gi|389577410|ref|ZP_10167438.1| putative TIM-barrel protein, nifR3 family [Eubacterium
cellulosolvens 6]
gi|389312895|gb|EIM57828.1| putative TIM-barrel protein, nifR3 family [Eubacterium
cellulosolvens 6]
Length = 322
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 126/229 (55%), Gaps = 8/229 (3%)
Query: 153 LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCG 212
L PM ++LP+RLL R G+ L YT MVSA + + + ++ P +RP+ +Q G
Sbjct: 17 LGPMAGVTDLPFRLLCREQGAGLVYTEMVSAKAILYKNRNTEALMQIDPGERPVSLQLFG 76
Query: 213 NDSKNLTE-AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
++ + + E AA++ E D D N+GCP H G+ L D L +++++ + V
Sbjct: 77 SEPEIVAEAAAQIEERPFDIFDFNMGCPVPKVVNNHEGSALMKDPKLAGEIIAAVVKRVH 136
Query: 272 VPVSCKIRIY---QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
PV+ KIR Q VN VE A++LE AG +AVHGRT Q G A W+ I V+
Sbjct: 137 KPVTVKIRKGWDCQSVN-AVEVAKVLEDAGAAAIAVHGRTRSQ--YYAGEADWDVIRQVK 193
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
+A++IPV NG++ A + QTGV G+M A G NP LF G+ R
Sbjct: 194 EAVSIPVFGNGDVDSPEKAAALVEQTGVDGIMIARGARGNPWLF-GRVR 241
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 102/235 (43%), Gaps = 38/235 (16%)
Query: 83 LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTI 142
L PM ++LP+RLL R G+ L YT MVSA + + + ++ P +RP+ +Q
Sbjct: 17 LGPMAGVTDLPFRLLCREQGAGLVYTEMVSAKAILYKNRNTEALMQIDPGERPVSLQ--- 73
Query: 143 FPRLGS-PRFILAPMVDASELPWRLLSRRYGSHLCYTP-MVSAHQ---FIADKKLRQEIL 197
GS P + E P+ + G C P +V+ H+ + D KL EI+
Sbjct: 74 --LFGSEPEIVAEAAAQIEERPFDIFDFNMG---CPVPKVVNNHEGSALMKDPKLAGEII 128
Query: 198 MSTPED--RPLIIQFCGN---DSKNLTEAAKLAEPHCDGIDINIGCPQMVA---KRGHYG 249
+ + +P+ ++ S N E AK+ E + G + R Y
Sbjct: 129 AAVVKRVHKPVTVKIRKGWDCQSVNAVEVAKVLE--------DAGAAAIAVHGRTRSQYY 180
Query: 250 AYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
A + DW +++ +++AV +PV DV+ + A ++E+ G + +
Sbjct: 181 AG-EADW----DVIRQVKEAVSIPVFGN----GDVDSPEKAAALVEQTGVDGIMI 226
>gi|149184568|ref|ZP_01862886.1| tRNA-dihydrouridine synthase [Erythrobacter sp. SD-21]
gi|148831888|gb|EDL50321.1| tRNA-dihydrouridine synthase [Erythrobacter sp. SD-21]
Length = 339
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 124/226 (54%), Gaps = 7/226 (3%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM ++LP+R L R+YGS L T M+++ I + + + P + P+ +Q
Sbjct: 26 ILAPMTGVTDLPFRKLVRKYGSGLNVTEMIASEAAIRETRQSVQKAAWDPIEEPVSMQLV 85
Query: 212 GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G D ++ EAAKL + + D IDIN GCP G+ L + PL T L+ + +AV
Sbjct: 86 GCDPSSMAEAAKLQQGNGADIIDINFGCPVRKVVGQLAGSALMREVPLATRLMEATVRAV 145
Query: 271 QVPVSCKIRI---YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
VPV+ K+R+ + D+N E AR+ E G +++ VHGRT +Q M G A WE + V
Sbjct: 146 DVPVTVKMRMGWDHADLNAP-ELARIAEDLGVKMVTVHGRTRNQ--MYKGSADWEFVRKV 202
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ A+ IPVI NG+I + D L Q+G G+M G NP L
Sbjct: 203 KDAVNIPVIVNGDICTIDDAAKALDQSGADGLMIGRGAYGNPWLLA 248
Score = 40.4 bits (93), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
ILAPM ++LP+R L R+YGS L T M+++ I + + + P + P+ +Q
Sbjct: 26 ILAPMTGVTDLPFRKLVRKYGSGLNVTEMIASEAAIRETRQSVQKAAWDPIEEPVSMQ 83
>gi|451948385|ref|YP_007468980.1| tRNA-U20-dihydrouridine synthase [Desulfocapsa sulfexigens DSM
10523]
gi|451907733|gb|AGF79327.1| tRNA-U20-dihydrouridine synthase [Desulfocapsa sulfexigens DSM
10523]
Length = 311
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 101/311 (32%), Positives = 152/311 (48%), Gaps = 27/311 (8%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
L SP FILAP+ S+LP+RLL R YG+ L + M+S H I +K ++L S+ +RP
Sbjct: 9 LNSP-FILAPLAGYSDLPFRLLCREYGAGLVVSEMISCHGLIYGQKKTFQMLASSVAERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHC-DGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ Q G+D + +AA L H IDIN+GCP + V K+G G+ L D PL ++
Sbjct: 68 VSFQLFGSDPVIMGKAAALLCEHSPSFIDINMGCPVRKVTKKGA-GSALMKDIPLAEKII 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
++ VPV+ K R D +++A+M E +G + VHGRT Q +G A W
Sbjct: 127 QAVIAHSTVPVTVKTRAGIDNGHITAIDFAKMCESSGVAAITVHGRTWAQ--AFSGSADW 184
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW- 380
I V+ ++IPVI NG++ + + +TG G+M L NP +F RP++
Sbjct: 185 NIIRQVKDTVSIPVIGNGDVHSYKEGLLRMDETGCDGIMIGRAALGNPWVFQIDGRPSFL 244
Query: 381 -----------ELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNH 429
EL +EYLD L Y R H + +S +R + N
Sbjct: 245 DAIIPTVKRHLELMAEYLDTNKA----LAYIRNHT---GRYFSEFSGSSQIRKSIHSCNS 297
Query: 430 IKDLRKAVDML 440
L+ ++ L
Sbjct: 298 YTALQDYIESL 308
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 74 TQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPED 133
T L SP FILAP+ S+LP+RLL R YG+ L + M+S H I +K ++L S+ +
Sbjct: 7 TTLNSP-FILAPLAGYSDLPFRLLCREYGAGLVVSEMISCHGLIYGQKKTFQMLASSVAE 65
Query: 134 RPLIIQ 139
RP+ Q
Sbjct: 66 RPVSFQ 71
>gi|335037236|ref|ZP_08530547.1| nitrogen regulation protein [Agrobacterium sp. ATCC 31749]
gi|333791392|gb|EGL62778.1| nitrogen regulation protein [Agrobacterium sp. ATCC 31749]
Length = 338
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 150/273 (54%), Gaps = 26/273 (9%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK-----KLRQEILMSTPEDR 204
R +LAPM ++LP+R L+ RYG+ L T MV++ + +A++ +L+ ++
Sbjct: 25 RAVLAPMSGVTDLPFRQLAWRYGAGLVVTEMVASRELVANRGESWARLKNAGMV------ 78
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
P ++Q G ++ + EAAK+A + GI DIN+GCP G+ G+ L D +L+
Sbjct: 79 PHMVQLAGREAHFMAEAAKIAADNGAGIIDINMGCPAKKVTGGYSGSALMRDPDHALSLI 138
Query: 264 SSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ AV VPV+ K+R+ D N E AR E AG QL+ +HGRT Q G A W
Sbjct: 139 EATVGAVDVPVTLKMRLGWDENSINAPEIARRAEAAGVQLITIHGRTRMQ--FYEGRADW 196
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT---AEGNLYNPALFTGQTRP 378
+ I AVR+ +++P+IANG+++ D L ++G VM A+G + PA+ G + P
Sbjct: 197 DAIRAVREVISVPLIANGDVETAEDAREILRRSGADAVMVGRGAQGQPWLPAVLAGHSAP 256
Query: 379 AWE----LASEYLDLVAQYPVR---LQYARGHV 404
+A E+ +++ ++ R L++AR H+
Sbjct: 257 QRNDIPAIAVEHYEMMLEFYGREAGLRHARKHL 289
Score = 42.0 bits (97), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK 120
R +LAPM ++LP+R L+ RYG+ L T MV++ + +A++
Sbjct: 25 RAVLAPMSGVTDLPFRQLAWRYGAGLVVTEMVASRELVANR 65
>gi|402307481|ref|ZP_10826504.1| TIM-barrel protein, nifR3 family [Prevotella sp. MSX73]
gi|400378531|gb|EJP31386.1| TIM-barrel protein, nifR3 family [Prevotella sp. MSX73]
Length = 321
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 127/236 (53%), Gaps = 9/236 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
GS LAPM D +++ +R+L +R+G+ + YT VSA + K L + E+RP
Sbjct: 8 FGSRPLFLAPMEDVTDIGFRMLCKRFGAAMVYTEFVSAEALVRSIKSTVSKLTISDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G +++ EAA++ E D IDIN GCP + VA +G GA + + PL+ ++
Sbjct: 68 VGIQIYGRTVEDMVEAARIVEQARPDVIDINFGCPVKKVAGKGA-GAGMLKNVPLMLDIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV+VPV+ K R+ D N + E A L+ G Q L +HGRT Q M TG A W
Sbjct: 127 REVVKAVKVPVTVKTRLGWDSNNLIISELAEQLQDCGIQALTIHGRTRSQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375
I V+ + IP+I NG+I +A+V + GV VM P LF+ Q
Sbjct: 185 SLIGEVKNNPRIHIPIIGNGDIGSIAEVHEAFDRYGVDAVMIGRATFGQPWLFSEQ 240
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
+ GS LAPM D +++ +R+L +R+G+ + YT VSA + K L + E+R
Sbjct: 7 EFGSRPLFLAPMEDVTDIGFRMLCKRFGAAMVYTEFVSAEALVRSIKSTVSKLTISDEER 66
Query: 135 PLIIQ---RTIFPRLGSPRFI 152
P+ IQ RT+ + + R +
Sbjct: 67 PVGIQIYGRTVEDMVEAARIV 87
>gi|390169603|ref|ZP_10221537.1| tRNA-dihydrouridine synthase [Sphingobium indicum B90A]
gi|389587877|gb|EIM65938.1| tRNA-dihydrouridine synthase [Sphingobium indicum B90A]
Length = 339
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 134/270 (49%), Gaps = 14/270 (5%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
+LAPM +++P+R L RRYGS L T M++ I + + + P + P+ +Q
Sbjct: 18 VVLAPMTGVTDMPFRTLVRRYGSGLNVTEMIATAAMIRETRQSLQKAAWHPLEEPVSMQL 77
Query: 211 CGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G + EAAKL A+ IDIN+GCP G G+ L D PL +L+ + +A
Sbjct: 78 AGCSPSEMAEAAKLNADRGAAIIDINMGCPVKKVVNGDAGSALMRDLPLAASLIEATVKA 137
Query: 270 VQVPVSCKIRIYQD--VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
V+VPV+ K+R+ D E AR+ E G +L+ VHGRT Q M G A W + +V
Sbjct: 138 VEVPVTVKMRMGWDHASLNAPELARIAEDLGAKLITVHGRTRCQ--MYKGSADWAFVRSV 195
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRPA 379
+ A+++PVI NG+I + D E L Q+G GVM G P L TG+
Sbjct: 196 KDAVSLPVIVNGDICSIDDAETALEQSGADGVMIGRGAYGRPWLIGQVMHWFRTGERLAD 255
Query: 380 WELASEYLDLVAQYPVRLQYARGHV-FNMC 408
L +Y + Y L++ H NM
Sbjct: 256 PSLEEQYRVITEHYRAMLEHYDNHTGVNMA 285
>gi|357164898|ref|XP_003580204.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Brachypodium
distachyon]
Length = 320
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 134/255 (52%), Gaps = 19/255 (7%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--------- 200
+ +LAPMV LP+RLL+ YG+ + Y + H+F+ +++ E L +T
Sbjct: 6 KLVLAPMVRVGTLPFRLLAAEYGADITYGEEIVDHKFLKCERVANESLGTTDFLERGTDN 65
Query: 201 ------PEDRP-LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 253
P++R ++ Q +D+ +AA++ IDIN+GCP+ + G GA L
Sbjct: 66 LVFRTCPQERDRVVFQMGTSDAVRALKAAQIVCNDVAAIDINMGCPKSFSVSGGMGAALL 125
Query: 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313
L+ +++++LR+ + ++CKIR+ TVE AR +E+ G LAVHGR V R
Sbjct: 126 SKPELIHDILTTLRRNLDTTLTCKIRLLNTRQDTVELARRIEKTGVPALAVHGRKVKDRP 185
Query: 314 MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ + W+ I V AL+IPVIANG++ D + TG VM A G L+N ++F
Sbjct: 186 RDP--SKWDEIADVVSALSIPVIANGDVFEYDDFKRIKDATGATSVMAARGALWNASIFC 243
Query: 374 GQTRPAW-ELASEYL 387
+ W E+ EY+
Sbjct: 244 AKGTTPWEEVKREYI 258
Score = 42.4 bits (98), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
+ +LAPMV LP+RLL+ YG+ + Y + H+F+ +++ E L +T
Sbjct: 6 KLVLAPMVRVGTLPFRLLAAEYGADITYGEEIVDHKFLKCERVANESLGTT 56
>gi|15888769|ref|NP_354450.1| nitrogen regulation protein [Agrobacterium fabrum str. C58]
gi|15156519|gb|AAK87235.1| nitrogen regulation protein [Agrobacterium fabrum str. C58]
Length = 338
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 150/273 (54%), Gaps = 26/273 (9%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK-----KLRQEILMSTPEDR 204
R +LAPM ++LP+R L+ RYG+ L T MV++ + +A++ +L+ ++
Sbjct: 25 RAVLAPMSGVTDLPFRQLAWRYGAGLVVTEMVASRELVANRGESWARLKNAGMV------ 78
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
P ++Q G ++ + EAAK+A + GI DIN+GCP G+ G+ L D +L+
Sbjct: 79 PHMVQLAGREAHFMAEAAKIAADNGAGIIDINMGCPAKKVTGGYSGSALMRDPDHALSLI 138
Query: 264 SSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ AV VPV+ K+R+ D N E AR E AG QL+ +HGRT Q G A W
Sbjct: 139 EATVGAVDVPVTLKMRLGWDENSINAPEIARRAEAAGVQLITIHGRTRMQ--FYEGRADW 196
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT---AEGNLYNPALFTGQTRP 378
+ I AVR+ +++P+IANG+++ D L ++G VM A+G + PA+ G + P
Sbjct: 197 DAIRAVREVISVPLIANGDVETAEDAREILRRSGADAVMVGRGAQGQPWLPAVLAGHSAP 256
Query: 379 AWE----LASEYLDLVAQYPVR---LQYARGHV 404
+A E+ +++ ++ R L++AR H+
Sbjct: 257 QRADIPTIAVEHYEMMLEFYGREAGLRHARKHL 289
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK 120
R +LAPM ++LP+R L+ RYG+ L T MV++ + +A++
Sbjct: 25 RAVLAPMSGVTDLPFRQLAWRYGAGLVVTEMVASRELVANR 65
>gi|266624024|ref|ZP_06116959.1| tRNA-dihydrouridine synthase B [Clostridium hathewayi DSM 13479]
gi|288864155|gb|EFC96453.1| tRNA-dihydrouridine synthase B [Clostridium hathewayi DSM 13479]
Length = 328
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 159/314 (50%), Gaps = 24/314 (7%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
ILAPM ++LP+R+L + G + T MVSA + + + +L +RP+ +Q
Sbjct: 14 LILAPMAGVTDLPFRVLCKEQGCGMVVTEMVSAKAILYKNRNTKALLEVEERERPVSVQL 73
Query: 211 CGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G+D + + + AKL EP D ID+N+GCP G+ + + L ++ ++ +A
Sbjct: 74 FGSDPEIMADIAKLIEPGPFDIIDVNMGCPVPKIVNNGEGSAMMKNPRLAEAVLGAMVKA 133
Query: 270 VQVPVSCKIR---IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
V+ PV+ K R DVN VE+A+M E G +AVHGRT +Q +G A W+ I
Sbjct: 134 VKKPVTVKFRKGFTDSDVN-AVEFAKMAESCGVAAVAVHGRTREQ--YYSGTADWDIIRR 190
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRP 378
V++A+ IPVI NG++ D +A L +TG G+M A G NP +F TG+ P
Sbjct: 191 VKEAVKIPVIGNGDVFAPEDAKALLDETGCDGIMIARGAKGNPWIFSRTIHYLETGELLP 250
Query: 379 ---AWELASEYL---DLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKD 432
EL + L ++ +Y R +M + LP ++ +R + + D
Sbjct: 251 PPSMEELQNMVLRHAEMSVEYKGEYLGIREMRKHMAWYTAGLPHSAKLRNDINAVETLAD 310
Query: 433 LRKAVDMLRERFID 446
L+ +++ERF D
Sbjct: 311 LKT---LVKERFSD 321
Score = 46.2 bits (108), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 99/234 (42%), Gaps = 32/234 (13%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
ILAPM ++LP+R+L + G + T MVSA + + + +L +RP+ +Q
Sbjct: 14 LILAPMAGVTDLPFRVLCKEQGCGMVVTEMVSAKAILYKNRNTKALLEVEERERPVSVQ- 72
Query: 141 TIFPRLGSPRFILAPMVDASE-LPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQE 195
GS I+A + E P+ ++ G C P + + + +L +
Sbjct: 73 ----LFGSDPEIMADIAKLIEPGPFDIIDVNMG---CPVPKIVNNGEGSAMMKNPRLAEA 125
Query: 196 IL--MSTPEDRPLIIQF---CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGA 250
+L M +P+ ++F + N E AK+AE C + + + +Y
Sbjct: 126 VLGAMVKAVKKPVTVKFRKGFTDSDVNAVEFAKMAE-SCGVAAVAV---HGRTREQYYSG 181
Query: 251 YLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
DW +++ +++AV++PV DV + +L+ GC + +
Sbjct: 182 --TADW----DIIRRVKEAVKIPVIGN----GDVFAPEDAKALLDETGCDGIMI 225
>gi|85708679|ref|ZP_01039745.1| tRNA-dihydrouridine synthase [Erythrobacter sp. NAP1]
gi|85690213|gb|EAQ30216.1| tRNA-dihydrouridine synthase [Erythrobacter sp. NAP1]
Length = 340
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 131/254 (51%), Gaps = 15/254 (5%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM +++P+R L RRYGS L T M+++ I + + + + P+ +Q
Sbjct: 25 LLAPMTGVTDMPFRTLVRRYGSGLNVTEMIASEAAIRETRQSVQKAEWDKTEEPVSMQLV 84
Query: 212 GNDSKNLTEAAKLAEPHCDG-IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G D ++ EAAKL E + IDIN GCP G+ L + PL T L+ + +AV
Sbjct: 85 GCDPSSMGEAAKLQEGNGAAIIDINFGCPVRKVVGQFAGSALMREVPLATKLMEATVKAV 144
Query: 271 QVPVSCKIRI---YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
VPV+ K+R+ +Q +N E AR+ E G +++ VHGRT +Q M G A W I V
Sbjct: 145 DVPVTVKMRMGWDHQSLNAP-EMARIAEDLGVKMITVHGRTRNQ--MYKGSADWSFIRKV 201
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRPA 379
++A+ IPVI NG+I + D L Q+G G+M G P L TG++ P
Sbjct: 202 KEAVNIPVIVNGDICTIQDAATALEQSGADGLMIGRGAYGKPWLLGQVMHWWRTGESIPT 261
Query: 380 WELASEYLDLVAQY 393
+Y LV Y
Sbjct: 262 PSFDEQYSVLVEHY 275
>gi|325261220|ref|ZP_08127958.1| TIM-barrel protein, NifR3 family [Clostridium sp. D5]
gi|324032674|gb|EGB93951.1| TIM-barrel protein, NifR3 family [Clostridium sp. D5]
Length = 319
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 126/226 (55%), Gaps = 5/226 (2%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
+IL PM ++LP+RLL + G+ L MVSA + + K + +L P++ P +Q
Sbjct: 15 YILGPMAGVTDLPFRLLCKEQGAGLVCMEMVSAKGILYNNKNTESLLEIHPDEMPASLQL 74
Query: 211 CGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G+D K ++E AK E I DIN+GCP R G+ L + L+ LVS++ +A
Sbjct: 75 FGSDPKIVSEMAKKIEERPFAILDINMGCPVPKVVRNGEGSALMKNPKLVYELVSAVVKA 134
Query: 270 VQVPVSCKIR--IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
++ PV+ KIR +D VE A+++E AG + VHGRT +Q +G A WE I V
Sbjct: 135 IKKPVTVKIRKGFDEDHVNAVEIAKIIEEAGAAAVGVHGRTREQ--YYSGKADWEIIRKV 192
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
++A++IPVI NG++ A QTG GVM A G NP +F+
Sbjct: 193 KEAVSIPVIGNGDVTSGEKAIAMREQTGCDGVMIARGAQGNPWIFS 238
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 97/229 (42%), Gaps = 32/229 (13%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
+IL PM ++LP+RLL + G+ L MVSA + + K + +L P++ P +Q
Sbjct: 15 YILGPMAGVTDLPFRLLCKEQGAGLVCMEMVSAKGILYNNKNTESLLEIHPDEMPASLQ- 73
Query: 141 TIFPRLGSPRFILAPMVDA-SELPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQE 195
GS I++ M E P+ +L G C P V + + KL E
Sbjct: 74 ----LFGSDPKIVSEMAKKIEERPFAILDINMG---CPVPKVVRNGEGSALMKNPKLVYE 126
Query: 196 ILMSTPE--DRPLIIQF---CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGA 250
++ + + +P+ ++ D N E AK+ E + +G ++ + G
Sbjct: 127 LVSAVVKAIKKPVTVKIRKGFDEDHVNAVEIAKIIE---EAGAAAVGVHGRTREQYYSG- 182
Query: 251 YLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC 299
+ DW ++ +++AV +PV DV + M E+ GC
Sbjct: 183 --KADW----EIIRKVKEAVSIPVIGN----GDVTSGEKAIAMREQTGC 221
>gi|156052667|ref|XP_001592260.1| hypothetical protein SS1G_06500 [Sclerotinia sclerotiorum 1980]
gi|154704279|gb|EDO04018.1| hypothetical protein SS1G_06500 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 342
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 133/269 (49%), Gaps = 9/269 (3%)
Query: 147 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 206
G P + APMV S+L +R +YG LC+TPM+ A +F R ++P P
Sbjct: 28 GRPLYTCAPMVRYSKLAFRETVAQYGVDLCWTPMILAKEFNRSVFARDSDFTTSPTSTPT 87
Query: 207 IIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSL 266
I QF ++ + L P+ +GIDIN GCPQ A GA L L+ +V
Sbjct: 88 IAQFGVCSPLEISRSTTLIAPYINGIDINCGCPQSWACACSIGAALMHKRELVAEMVKEA 147
Query: 267 RQAV-------QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA 319
+ A+ + VS KIRI++D+ TV++ + ++ AG + +HGR + ++
Sbjct: 148 KSALKREGYEGKKTVSVKIRIHRDLRDTVDFIKTVQDAGVDFITIHGRM--RSTPSSHPV 205
Query: 320 SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPA 379
+ E I + T+P ++NG+I L QT V+GVM+A G L NPALF G
Sbjct: 206 NLEAIKLLNTHTTVPTVSNGDITSLRSAHEHTQQTSVSGVMSARGLLSNPALFAGYVSTP 265
Query: 380 WELASEYLDLVAQYPVRLQYARGHVFNMC 408
WE +L+ V + P+ + H+ MC
Sbjct: 266 WECVDVFLNCVVRQPIPFKLVVHHLSEMC 294
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 71 DAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQF 116
D Q G P + APMV S+L +R +YG LC+TPM+ A +F
Sbjct: 22 DIAKQEGRPLYTCAPMVRYSKLAFRETVAQYGVDLCWTPMILAKEF 67
>gi|296284138|ref|ZP_06862136.1| tRNA-dihydrouridine synthase [Citromicrobium bathyomarinum JL354]
Length = 339
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 140/264 (53%), Gaps = 13/264 (4%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE-- 202
R+ +P +LAPM +++P+R L RRYGS L T M+++ I ++ RQ + + +
Sbjct: 20 RVETP-VVLAPMTGVTDMPFRTLVRRYGSGLNVTEMIASEAAI--RETRQSVQKAAWDRI 76
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTN 261
+ P+ +Q G D ++ EAAKL E + I DIN GCP G+ L + PL T
Sbjct: 77 EEPVSMQLVGCDPASMAEAAKLQEGNGAAIIDINFGCPVRKVVGQLAGSALMREVPLATK 136
Query: 262 LVSSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA 319
L+ + +AV VPV+ K+R+ D + E AR+ E G +++ VHGRT +Q M G A
Sbjct: 137 LMEATVKAVDVPVTVKMRMGWDHDSLNAPELARIAEDLGVKMITVHGRTRNQ--MYKGSA 194
Query: 320 SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPA 379
W I V+ A+ IPVI NG+I + D L Q+G G+M G P L GQ
Sbjct: 195 DWSFIAKVKDAVNIPVIVNGDICSIDDAARALEQSGADGLMIGRGAYGRPWLL-GQVMHW 253
Query: 380 WELASEYLD--LVAQYPVRLQYAR 401
W+ + D L QY V +++ R
Sbjct: 254 WQTGEKRADPPLNEQYAVVVEHFR 277
>gi|381203281|ref|ZP_09910388.1| tRNA-dihydrouridine synthase [Sphingobium yanoikuyae XLDN2-5]
Length = 340
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 151/309 (48%), Gaps = 28/309 (9%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM +++P+R L RR+GS L T M+++ I + + + P + P+ +Q
Sbjct: 20 ILAPMTGVTDMPFRTLVRRFGSGLNVTEMIASAAMIRETRQSLQKAAWHPLEEPVSMQLA 79
Query: 212 GNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G + EAAKL A+ IDIN+GCP G G+ L D PL L+ + +AV
Sbjct: 80 GCSPTEMAEAAKLNADRGAAIIDINMGCPVKKVVNGDAGSALMRDLPLAAALIKATVEAV 139
Query: 271 QVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
VPV+ K+R+ D + E A + E G +L+ VHGRT Q M G A W + +V+
Sbjct: 140 DVPVTVKMRMGWDHSSLNAPELAHIAEDLGAKLITVHGRTRCQ--MYKGSADWRFVRSVK 197
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRPAW 380
+A+ +PVI NG+I + D E L Q+G GVM G P L TG+ R
Sbjct: 198 EAVKLPVIVNGDICSIEDAETALDQSGADGVMIGRGAYGKPWLLGQVMHWFATGERRADP 257
Query: 381 ELASEYLDLVAQYPVRLQY---------ARGHVFNMCHHLLTLPENSDVRLLVGKTNHIK 431
LA +Y + Y + L + AR H+ + L +++ R V N
Sbjct: 258 SLAEQYNLITEHYRMMLDHYDNMTGVNMARKHI---GWYTKGLTGSAEFRNTV---NQEA 311
Query: 432 DLRKAVDML 440
D ++ +DML
Sbjct: 312 DAQRVLDML 320
>gi|430751770|ref|YP_007214678.1| TIM-barrel protein, nifR3 family [Thermobacillus composti KWC4]
gi|430735735|gb|AGA59680.1| putative TIM-barrel protein, nifR3 family [Thermobacillus composti
KWC4]
Length = 329
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 146/290 (50%), Gaps = 20/290 (6%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ +LAPM +RL+++ +G L MVS I K E+L ++PL +Q
Sbjct: 12 QVVLAPMAGVCNPAFRLIAKEFGCGLVCAEMVSDKAIIHGNKRTMEMLYVDEREKPLSLQ 71
Query: 210 FCGNDSKNLTEAAKLAEP--HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G D K+L EAAK+ + + D IDIN+GCP + GA D + +V+++
Sbjct: 72 IFGGDRKSLVEAAKVVDKQTNADIIDINMGCPVPKVTKCDAGARWLLDPDKIYEMVAAVV 131
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV+ PV+ K+RI D VE AR +ERAG + +AVHGRT +Q + TG A W I
Sbjct: 132 DAVEKPVTVKMRIGWDDQHIYAVENARAVERAGGKAVAVHGRTREQ--LYTGKADWNVIK 189
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP--------ALFTGQTR 377
V++A++IPVI NG++ D + L TGV GVM G L NP L TG+
Sbjct: 190 EVKEAVSIPVIGNGDVFTPEDAKRMLETTGVDGVMIGRGALGNPWMLYRTVHYLTTGELL 249
Query: 378 P------AWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVR 421
P E+A ++D + Q R ++ +L LP + V+
Sbjct: 250 PEPTPKEKVEIAVLHMDRLIALKGEAQAVREMRKHLAWYLKGLPRAARVK 299
>gi|297819610|ref|XP_002877688.1| FAD binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323526|gb|EFH53947.1| FAD binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 543
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 156/309 (50%), Gaps = 25/309 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI---------------ADKKLRQ 194
+ +LAPMV L +R+L+ YG+ + Y+ + H+ + +K
Sbjct: 220 KHVLAPMVRVGTLSFRMLAAEYGADITYSEEIIDHKLVKCERRINVAYGTTEFVEKGTDN 279
Query: 195 EILMSTPEDRP-LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 253
+ + E+R ++ Q +D+ +AA++ +DIN+GCP+ + +G GA L
Sbjct: 280 VVFSTCKEERNRVVFQMGTSDAVRALKAAEIVCNDVATVDINMGCPKAFSIQGGMGAALL 339
Query: 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313
L+ +++++L++ + VPV+CKIR+ + TVE AR +E+ G LAVHGR + R
Sbjct: 340 SKPELIHDILATLKRNLDVPVTCKIRLLKSPADTVELARRIEKLGVPALAVHGRKIADRP 399
Query: 314 MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ A W+ I V AL+IPVIANG++ D TG A VM A G ++N ++F+
Sbjct: 400 RDP--AKWDEIADVVAALSIPVIANGDVLEYDDFSRIKTATGAASVMVARGAMWNASIFS 457
Query: 374 GQTRPAWE-LASEYLDLVAQYPVRLQYARGHVFNMC--HHLLTLPENSDVRLLVGKTNHI 430
+ + WE + +YL + ++ + + M H L LPE + K + +
Sbjct: 458 PKGKSHWEDVKKKYLRKSILWNNDVKSTKYTIKEMIAHHSCLELPEGKS----INKADTL 513
Query: 431 KDLRKAVDM 439
+DL + D+
Sbjct: 514 EDLARLYDL 522
>gi|402908813|ref|XP_003917129.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
1 [Papio anubis]
gi|402908815|ref|XP_003917130.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
2 [Papio anubis]
gi|355710317|gb|EHH31781.1| tRNA-dihydrouridine synthase 2-like protein [Macaca mulatta]
gi|355756891|gb|EHH60499.1| tRNA-dihydrouridine synthase 2-like protein [Macaca fascicularis]
Length = 493
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 147/294 (50%), Gaps = 25/294 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS----TPEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + I K++ E+L + P+DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRV 72
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q +D++ A+L E GID+N+GCP+ + +G GA L
Sbjct: 73 VFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLS 132
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + ++S+L + ++ PV+CKIRI + T+ + +ER G +AVHGR ++R
Sbjct: 133 DPDKIEKILSTLVKGIRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQ 192
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ S E I A+ L+IPVIANG IQ +D+E T + VM A ++NP+
Sbjct: 193 HP--VSCEVIKAIADTLSIPVIANGGSHDHIQRYSDIEDFRQATAASSVMVARAAMWNPS 250
Query: 371 LFTGQT-RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+F + RP E+ +Y+ QY + + +C L E+ RLL
Sbjct: 251 IFLKEGLRPLEEVMQKYIRYAVQYD---NHYTNTKYCLCQMLREQLESPQGRLL 301
>gi|90083447|dbj|BAE90806.1| unnamed protein product [Macaca fascicularis]
Length = 493
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 147/294 (50%), Gaps = 25/294 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS----TPEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + I K++ E+L + P+DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRV 72
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q +D++ A+L E GID+N+GCP+ + +G GA L
Sbjct: 73 VFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLS 132
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + ++S+L + ++ PV+CKIRI + T+ + +ER G +AVHGR ++R
Sbjct: 133 DPDKIEKILSTLVKGIRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQ 192
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ S E I A+ L+IPVIANG IQ +D+E T + VM A ++NP+
Sbjct: 193 HP--VSCEVIKAIADTLSIPVIANGGSHDHIQRYSDIEDFRQATAASSVMVARAAMWNPS 250
Query: 371 LFTGQT-RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+F + RP E+ +Y+ QY + + +C L E+ RLL
Sbjct: 251 IFLKEGLRPLEEVMQKYIRYAVQYD---NHYTNTKYCLCQMLREQLESPQGRLL 301
>gi|411116431|ref|ZP_11388918.1| putative TIM-barrel protein, nifR3 family [Oscillatoriales
cyanobacterium JSC-12]
gi|410712534|gb|EKQ70035.1| putative TIM-barrel protein, nifR3 family [Oscillatoriales
cyanobacterium JSC-12]
Length = 359
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 105/314 (33%), Positives = 165/314 (52%), Gaps = 31/314 (9%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYG-SHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 206
+ R + +P+ ++L +R L RRY + + YT MV+A K+L +I+ P +RP+
Sbjct: 24 NSRVLQSPLSGVTDLVFRRLVRRYAPTSMMYTEMVNATGLHYVKQL-PKIMEVDPNERPI 82
Query: 207 IIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
IQ L EAA++A E D +DIN+GCP + G+ L L + +V S
Sbjct: 83 SIQLFDCRPDFLAEAAQMAVEEGADTVDINMGCPVNKITKNGGGSSLLRQPELASEIVRS 142
Query: 266 LRQAVQVPVSCKIRIY---QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
+ QAV VPV+ K RI Q++N +++AR +E AG +++ VHGRT Q +G A WE
Sbjct: 143 VVQAVDVPVTVKTRIGWTDQEIN-ILDFARRMEDAGAKMITVHGRTRAQG--YSGSAKWE 199
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TG 374
I V++ L+IPVIANG+I + CL QTG GVM + G L P L TG
Sbjct: 200 WIAKVKQVLSIPVIANGDIFSVEAAVKCLEQTGADGVMCSRGTLGYPFLVGEVDHFLKTG 259
Query: 375 QTRPA------WELASEYLDLVAQYPVR--LQYARGHVFNMCHHLLTLPENSDVRLLVGK 426
+ PA + A E+L ++ +Y ++ AR H+ + E L G+
Sbjct: 260 EQMPAPTAVERLQCAREHLQMLHEYKGNRGVRQARKHMTWYSKGFMGAAE------LRGQ 313
Query: 427 TNHIKDLRKAVDML 440
+ I+++++ +D+L
Sbjct: 314 LSTIENVQQGLDLL 327
>gi|408785355|ref|ZP_11197102.1| tRNA-dihydrouridine synthase [Rhizobium lupini HPC(L)]
gi|408488949|gb|EKJ97256.1| tRNA-dihydrouridine synthase [Rhizobium lupini HPC(L)]
Length = 333
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 151/273 (55%), Gaps = 26/273 (9%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK-----KLRQEILMSTPEDR 204
R +LAPM ++LP+R L+ RYG+ L T MV++ + +A++ +L+ ++
Sbjct: 20 RAVLAPMSGVTDLPFRQLAWRYGAGLVVTEMVASRELVANRGESWARLKNAGMV------ 73
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
P ++Q G ++ + EAAK+A + GI DIN+GCP G+ G+ L D +L+
Sbjct: 74 PHMVQLAGREAHFMAEAAKIAAGNGAGIIDINMGCPAKKVTGGYSGSALMRDPDHALSLI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV VPV+ K+R+ D N + AR E AG +L+ +HGRT Q G A W
Sbjct: 134 EATVEAVDVPVTLKMRLGWDENSINAPDIARRAEAAGVRLITIHGRTRMQ--FYEGRADW 191
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT---AEGNLYNPALFTGQTRP 378
+ I AVR+ +++P+IANG+I+ D L ++G VM A+G + PA+ G P
Sbjct: 192 DAIRAVREVISVPLIANGDIETAEDAREILRRSGADAVMVGRGAQGQPWLPAVLAGHAAP 251
Query: 379 AWE----LASEYLDLVAQYPVR---LQYARGHV 404
E +A E+ +++ ++ R L++AR H+
Sbjct: 252 HREDIPAIAVEHYEMMLEFYGREAGLRHARKHL 284
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK 120
R +LAPM ++LP+R L+ RYG+ L T MV++ + +A++
Sbjct: 20 RAVLAPMSGVTDLPFRQLAWRYGAGLVVTEMVASRELVANR 60
>gi|8923374|ref|NP_060273.1| tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform 1 [Homo
sapiens]
gi|419635745|ref|NP_001258691.1| tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform 1 [Homo
sapiens]
gi|73620832|sp|Q9NX74.1|DUS2L_HUMAN RecName: Full=tRNA-dihydrouridine(20) synthase [NAD(P)+]-like;
AltName: Full=Up-regulated in lung cancer protein 8;
Short=URLC8; AltName: Full=tRNA-dihydrouridine synthase
2-like; Short=hDUS2
gi|7020473|dbj|BAA91143.1| unnamed protein product [Homo sapiens]
gi|16306804|gb|AAH06527.1| Dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) [Homo
sapiens]
gi|71006842|dbj|BAE07219.1| up-regulated in lung cancer 8 [Homo sapiens]
gi|119603613|gb|EAW83207.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|119603614|gb|EAW83208.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|119603615|gb|EAW83209.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|158254588|dbj|BAF83267.1| unnamed protein product [Homo sapiens]
gi|312152458|gb|ADQ32741.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)
[synthetic construct]
Length = 493
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 146/294 (49%), Gaps = 25/294 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS----TPEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + I K++ E+L + P+DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRV 72
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q +D++ A+L E GID+N+GCP+ + +G GA L
Sbjct: 73 VFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLS 132
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + ++S+L + + PV+CKIRI + T+ + +ER G +AVHGR ++R
Sbjct: 133 DPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQ 192
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ S E I A+ L+IPVIANG IQ +D+E T + VM A ++NP+
Sbjct: 193 HP--VSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWNPS 250
Query: 371 LFTGQT-RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+F + RP E+ +Y+ QY + + +C L E+ RLL
Sbjct: 251 IFLKEGLRPLEEVMQKYIRYAVQYD---NHYTNTKYCLCQMLREQLESPQGRLL 301
>gi|449499830|ref|XP_004160928.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like [Cucumis
sativus]
Length = 325
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 151/305 (49%), Gaps = 25/305 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP-------- 201
+F+LAPMV LP+RLL+ ++G+ + Y + H+ I ++ E + ST
Sbjct: 6 KFVLAPMVRVGTLPFRLLASQHGADITYGEEIIDHKMIKCERRLNEHVGSTDFVEKGTNN 65
Query: 202 --------EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 253
E + ++ Q +++ AA+L IDIN+GCP+ + G GA L
Sbjct: 66 VVFRTCSLERKHVVFQMGTSNAARALSAAQLVCQDVAAIDINMGCPKSFSISGGMGAALL 125
Query: 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313
+ L+ +++++LR+ + + ++CKIR+ TVE AR +E G L VHGR V R
Sbjct: 126 NKPDLIHDILTTLRRNLNILITCKIRLLNSPQDTVELARRIESTGVSALGVHGRRVADRP 185
Query: 314 MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ A W I V ALTIPVIANG+I D + TG + +M A G L+N ++F+
Sbjct: 186 RDP--AKWSEIADVVAALTIPVIANGDIFEYDDFQRIKVHTGASSMMVARGALWNASIFS 243
Query: 374 GQTRPAWE-LASEYLDLVAQYPVRLQYARGHVFNMC--HHLLTLPENSDVRLLVGKTNHI 430
+ + WE + EY+ + ++ + + M H L LPE V K+ +
Sbjct: 244 PEGKLPWEDVKREYVRKSILWDNDIKSTKYTLKEMIMHHSCLELPEGK----AVIKSESL 299
Query: 431 KDLRK 435
DL K
Sbjct: 300 ADLAK 304
>gi|334344351|ref|YP_004552903.1| TIM-barrel fold family protein [Sphingobium chlorophenolicum L-1]
gi|334100973|gb|AEG48397.1| TIM-barrel protein, nifR3 family [Sphingobium chlorophenolicum L-1]
Length = 339
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 104/312 (33%), Positives = 151/312 (48%), Gaps = 25/312 (8%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
+LAPM +++P+R L RRYGS L T M++ I + + + P + P+ +Q
Sbjct: 18 VVLAPMTGVTDMPFRTLVRRYGSGLNVTEMIATAAMIRETRQSLQKAAWHPLEEPVSMQL 77
Query: 211 CGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G + EAAKL A+ IDIN+GCP G G+ L D PL +L+ + +A
Sbjct: 78 AGCSPTEMAEAAKLNADRGAAIIDINMGCPVKKVVNGDAGSALMRDLPLAASLIEATVKA 137
Query: 270 VQVPVSCKIRIYQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
V VPV+ K+R+ D +N E AR+ E G +L+ VHGRT Q M G A W + +
Sbjct: 138 VDVPVTVKMRMGWDHASLNAP-ELARIAEDLGAKLITVHGRTRCQ--MYKGSADWAFVRS 194
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRP 378
V++A+++PVI NG+I + D E L Q+G GVM G P L TG+
Sbjct: 195 VKEAVSLPVIVNGDICSIDDAETALEQSGADGVMIGRGAYGRPWLIGQVMHWFRTGERLA 254
Query: 379 AWELASEYLDLVAQYPVRLQYARGHV-FNMCH-----HLLTLPENSDVRLLVGKTNHIKD 432
L +Y + Y L + H NM + LP +++ R V N D
Sbjct: 255 DPSLEEQYGLITEHYRAMLDHYDNHTGVNMARKHIGWYTKGLPGSAEFRNAV---NQEPD 311
Query: 433 LRKAVDMLRERF 444
+DML RF
Sbjct: 312 GDIVLDML-ARF 322
>gi|160939910|ref|ZP_02087257.1| hypothetical protein CLOBOL_04801 [Clostridium bolteae ATCC
BAA-613]
gi|158437344|gb|EDP15109.1| hypothetical protein CLOBOL_04801 [Clostridium bolteae ATCC
BAA-613]
Length = 321
Score = 138 bits (348), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 99/313 (31%), Positives = 160/313 (51%), Gaps = 28/313 (8%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM ++LP+R+L R G+ T MVSA + + K +E+L P +RP +Q
Sbjct: 15 ILAPMAGVTDLPFRVLCREQGAGCVVTEMVSAKAVLYNNKNTRELLQIDPAERPAAVQLF 74
Query: 212 GNDSKNLTE-AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G++ + E AA+L E D ID+N+GCP G+ L + +++++ +AV
Sbjct: 75 GSEPDIMAEIAARLEEGPYDYIDVNMGCPVPKIVNNGEGSALMKNPERAKEVLTAMVKAV 134
Query: 271 QVPVSCKIRI-YQDVN-KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+ PV+ K R + D++ VE+A+M E G +AVHGRT +Q +G A W+ I V+
Sbjct: 135 KKPVTVKFRKGFNDLSVNAVEFAKMAESCGVAAVAVHGRTREQ--YYSGKADWDIIRQVK 192
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRPAW 380
+A+ IPVI NG+I D L +TG G+M A G NP LF TG+ P
Sbjct: 193 EAVRIPVIGNGDIFTPEDAGRMLKETGCDGIMVARGAKGNPWLFGRINHYLDTGEVLPGP 252
Query: 381 ELAS------EYLDLVAQYP---VRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIK 431
+A + ++ Q+ V ++ RGH M + +P ++ +R + N ++
Sbjct: 253 SMAEIKAMILRHGRMLVQFKGEGVAMREMRGH---MAWYTKGMPHSATLR---NEINQVE 306
Query: 432 DLRKAVDMLRERF 444
L V++L +
Sbjct: 307 TLEGFVELLDRKI 319
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 32/233 (13%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
ILAPM ++LP+R+L R G+ T MVSA + + K +E+L P +RP +Q
Sbjct: 15 ILAPMAGVTDLPFRVLCREQGAGCVVTEMVSAKAVLYNNKNTRELLQIDPAERPAAVQ-- 72
Query: 142 IFPRLGSPRFILAPMVDA-SELPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQEI 196
GS I+A + E P+ + G C P + + + + +E+
Sbjct: 73 ---LFGSEPDIMAEIAARLEEGPYDYIDVNMG---CPVPKIVNNGEGSALMKNPERAKEV 126
Query: 197 L--MSTPEDRPLIIQF--CGND-SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAY 251
L M +P+ ++F ND S N E AK+AE C + + + +Y
Sbjct: 127 LTAMVKAVKKPVTVKFRKGFNDLSVNAVEFAKMAE-SCGVAAVAV---HGRTREQYYSG- 181
Query: 252 LQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
+ DW +++ +++AV++PV D+ + RML+ GC + V
Sbjct: 182 -KADW----DIIRQVKEAVRIPVIGN----GDIFTPEDAGRMLKETGCDGIMV 225
>gi|409437310|ref|ZP_11264429.1| tRNA-dihydrouridine synthase B [Rhizobium mesoamericanum STM3625]
gi|408751034|emb|CCM75585.1| tRNA-dihydrouridine synthase B [Rhizobium mesoamericanum STM3625]
Length = 333
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 147/268 (54%), Gaps = 16/268 (5%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R +LAPM +++P+R L+ R+G+ L T MV++ + + + + + P ++Q
Sbjct: 20 RVVLAPMSGVTDMPFRQLAWRHGAGLVVTEMVASRELV-NSTAESWARLESAGFEPHMVQ 78
Query: 210 FCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G ++ + EAAK+A H D IDIN+GCP G+ G+ L D +L+ + +
Sbjct: 79 LAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGYSGSALMRDPDHALSLIEATVK 138
Query: 269 AVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV VPV+ K+R+ D N + AR + AG QL+ +HGRT Q G A W+ I A
Sbjct: 139 AVSVPVTLKMRLGWDENSINAPQIARRAQEAGIQLITIHGRTRMQ--FYEGRADWDKIRA 196
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP---ALFTGQTRPA-WE- 381
VR +T+P++ANG+++ + D + L ++G VM G+ P + G+T P WE
Sbjct: 197 VRDVITVPLVANGDVETVEDAQEILHRSGADAVMIGRGSQGRPWHAGVLAGKTAPDLWEI 256
Query: 382 --LASEYLDLVAQY---PVRLQYARGHV 404
+A+E+ ++ ++ V +++AR H+
Sbjct: 257 PDIATEHYRMMLEFYGEAVAVRHARKHL 284
>gi|186510837|ref|NP_190533.3| tRNA-dihydrouridine synthase 2 [Arabidopsis thaliana]
gi|332645048|gb|AEE78569.1| tRNA-dihydrouridine synthase 2 [Arabidopsis thaliana]
Length = 329
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 157/309 (50%), Gaps = 25/309 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIA-DKKLR-------------QE 195
+ +LAPMV L +R+L+ YG+ + Y + H+ + +++L
Sbjct: 6 KLVLAPMVRVGTLSFRMLAAEYGADITYGEEIIDHKLVKCERRLNVASGTSEFVEKGTDN 65
Query: 196 ILMST--PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 253
++ ST E ++ Q +D+ +A+++ IDIN+GCP+ + +G GA L
Sbjct: 66 VVFSTCDEEKSRVVFQMGTSDAVRALKASEIVCNDVATIDINMGCPKAFSIQGGMGAALL 125
Query: 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313
L+ +++++L++ + VPV+CKIR+ + TVE AR +E+ G LAVHGR + R
Sbjct: 126 SKPELIHDILATLKRNLDVPVTCKIRLLKSPADTVELARRIEKLGVPALAVHGRKIADRP 185
Query: 314 MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ A W+ I V AL+IPVIANG++ D TG A VM A G ++N ++F+
Sbjct: 186 RDP--AKWDEIADVVAALSIPVIANGDVLEYDDFSRIKTATGAASVMVARGAMWNASIFS 243
Query: 374 GQTRPAWE-LASEYLDLVAQYPVRLQYARGHVFNMC--HHLLTLPENSDVRLLVGKTNHI 430
+ + WE + +YL + ++ + + M H L LPE + K + +
Sbjct: 244 PKGKSHWEDVKKKYLRKSILWNNDVKSTKYTIKEMIAHHSCLELPEGKS----INKADTL 299
Query: 431 KDLRKAVDM 439
+DL + D+
Sbjct: 300 EDLARLYDL 308
>gi|229829710|ref|ZP_04455779.1| hypothetical protein GCWU000342_01807 [Shuttleworthia satelles DSM
14600]
gi|229791699|gb|EEP27813.1| hypothetical protein GCWU000342_01807 [Shuttleworthia satelles DSM
14600]
Length = 341
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 89/227 (39%), Positives = 126/227 (55%), Gaps = 9/227 (3%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
IL PM S+LP+RLL G+ L T MVSA + +E+L + E+RP+ +Q
Sbjct: 33 LILGPMAGVSDLPFRLLCHEQGAGLVCTEMVSAKAIAYKNRNTKELLKVSDEERPVSLQI 92
Query: 211 CGNDSKNLTEAAKLAEP-HCDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTN-LVSSLR 267
G+D + E A+ E H D +DIN+GCP V G A L++ PLL ++ ++
Sbjct: 93 FGSDPVIMAEQARQIEDLHWDILDINMGCPVPKVFNNGDGSALLRN--PLLAGQIIEAVA 150
Query: 268 QAVQVPVSCKIR--IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
A+ P++ KIR + D VE A + + +G +AVHGRT DQ M G A WE I
Sbjct: 151 GAIHKPLTVKIRLGVSPDTINAVEMAHIAQESGAAAVAVHGRTRDQFYM--GAADWEQIA 208
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
V++A++IPVI NG+I+ ADV+A QTGV M A NP +F
Sbjct: 209 RVKQAVSIPVIGNGDIKSPADVQAMYEQTGVDAYMIARAAQGNPWIF 255
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
IL PM S+LP+RLL G+ L T MVSA + +E+L + E+RP+ +Q
Sbjct: 33 LILGPMAGVSDLPFRLLCHEQGAGLVCTEMVSAKAIAYKNRNTKELLKVSDEERPVSLQ- 91
Query: 141 TIFPRLGSPRFILAPMV-DASELPWRLLSRRYGSHLCYTPMV 181
IF GS I+A +L W +L G C P V
Sbjct: 92 -IF---GSDPVIMAEQARQIEDLHWDILDINMG---CPVPKV 126
>gi|168056695|ref|XP_001780354.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668196|gb|EDQ54808.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 332
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 143/279 (51%), Gaps = 19/279 (6%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--------- 200
++ILAPMV LP+R+L+ YG+ + Y + H+ + +++ E L +
Sbjct: 6 KYILAPMVRVGGLPFRMLAAGYGADITYGEEIVDHKMLCCERVENEALGTVDFVDKKSKD 65
Query: 201 -------PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 253
E ++ Q D+ + A + D+N+GCP+ + G G+ L
Sbjct: 66 IIFRTCDAEKHRVVFQVGTADAVRCLKVANMVAGDIAAFDVNMGCPKSFSTSGGMGSALL 125
Query: 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313
D L+ +++++LR+ + +PV+CK+R+ + +TVE +R +E+ G LAVHGR V R
Sbjct: 126 DKPELIHDILTTLRRNLNIPVTCKVRLLKTCGETVELSRRIEKTGVSALAVHGRRVADRP 185
Query: 314 MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ A+W+ I V AL+IPVIANG++ +D + TG + VM A G ++N ++F
Sbjct: 186 RDP--ANWDGIREVVSALSIPVIANGDVFDYSDFQRMKDATGASSVMVARGAVWNASVFR 243
Query: 374 GQTRPAWE-LASEYLDLVAQYPVRLQYARGHVFNMCHHL 411
+ WE + +EY+ ++ + + + + M H
Sbjct: 244 PEGMLYWEDVKTEYVKRCIEWDNNVHWTKHTLKAMIMHF 282
>gi|452964770|gb|EME69804.1| NifR3-like protein [Magnetospirillum sp. SO-1]
Length = 335
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 161/308 (52%), Gaps = 26/308 (8%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
ILAPM +++P R L +R G+ L + M+++ I + ++ T E+ P+ +Q
Sbjct: 20 VILAPMAGVTDMPNRRLVKRLGAGLVVSEMIASQAMIRQNRQTMQMAQHTAEEFPMSVQL 79
Query: 211 CGNDSKNLTEAAKLAEPHCDG-IDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G + K + EAAKL + IDIN+GCP + VA +G G+ L + L ++S++ +
Sbjct: 80 AGCEPKVMAEAAKLNQDLGAAIIDINMGCPVKKVALKGEAGSALMRNENLAARIMSAVVE 139
Query: 269 AVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV +PV+ K+R D+ AR+ E G +++ VHGRT +Q M TG A W I
Sbjct: 140 AVDIPVTLKMRTGWDMTSRNAPSLARVAEECGIRMVTVHGRTRNQ--MYTGQADWAFIGE 197
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP--------ALFTGQTRP 378
V++A++IPVI NG+++ + D + L +G GVM G P L +G+ RP
Sbjct: 198 VKRAVSIPVIGNGDVESIDDALSMLELSGADGVMIGRGTYGRPWLPGQVAHFLSSGERRP 257
Query: 379 AWELASE------YLD-LVAQYPVR--LQYARGHVFNMCHHLLTLPENSDVRLLVGKTNH 429
LA + +LD +++ Y ++ AR HV + LP +++ R + +T+
Sbjct: 258 DPTLAEQMEIILGHLDAMLSHYGTEPGVRIARKHV---GWYSKGLPGSAEFRAEINRTSD 314
Query: 430 IKDLRKAV 437
+R A+
Sbjct: 315 PAVMRAAI 322
>gi|397487030|ref|XP_003814617.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
1 [Pan paniscus]
gi|397487032|ref|XP_003814618.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
2 [Pan paniscus]
gi|410209166|gb|JAA01802.1| dihydrouridine synthase 2-like, SMM1 homolog [Pan troglodytes]
gi|410247418|gb|JAA11676.1| dihydrouridine synthase 2-like, SMM1 homolog [Pan troglodytes]
gi|410297398|gb|JAA27299.1| dihydrouridine synthase 2-like, SMM1 homolog [Pan troglodytes]
gi|410330847|gb|JAA34370.1| dihydrouridine synthase 2-like, SMM1 homolog [Pan troglodytes]
Length = 493
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 145/294 (49%), Gaps = 25/294 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS----TPEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + I K++ E+L + P+DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRV 72
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q +D++ A+L E GID+N+GCP+ + +G GA L
Sbjct: 73 VFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLS 132
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + ++S+L + PV+CKIRI + T+ + +ER G +AVHGR ++R
Sbjct: 133 DPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQ 192
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ S E I A+ L+IPVIANG IQ +D+E T + VM A ++NP+
Sbjct: 193 HP--VSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWNPS 250
Query: 371 LFTGQT-RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+F + RP E+ +Y+ QY + + +C L E+ RLL
Sbjct: 251 IFLKEGLRPLEEVMQKYIRYAVQYD---NHYTNTKYCLCQMLREQLESPQGRLL 301
>gi|94263194|ref|ZP_01287011.1| Dihydrouridine synthase TIM-barrel protein nifR3 [delta
proteobacterium MLMS-1]
gi|93456412|gb|EAT06532.1| Dihydrouridine synthase TIM-barrel protein nifR3 [delta
proteobacterium MLMS-1]
Length = 313
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 87/231 (37%), Positives = 129/231 (55%), Gaps = 10/231 (4%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
P + AP+ S+LP+RLL R YG+ LCY+ M+S H + + E+L +T +RPL++
Sbjct: 13 PPLVAAPLAGYSDLPFRLLCREYGAGLCYSEMLSCHGLVRRQPATIEMLATTAAERPLLM 72
Query: 209 QFCGNDSKNLTEAAK-LAEPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSL 266
Q G + + + EAA L+ DGIDIN+GCP + V K+G GA L D L + ++
Sbjct: 73 QLFGAEPEVMGEAAAILSRLPIDGIDINMGCPVRKVVKKG-AGAALMRDPELAAAITGAV 131
Query: 267 RQAV-QVPVSCKIRI---YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
A +PV+ KIR ++ +N ++AR+L G + +H RT TG A W
Sbjct: 132 TAAAGDLPVTVKIRSGWNHKQINAP-DFARLLVAHGAAAVTIHARTWSDG--FTGRADWA 188
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
I AV++A+++PVI NG+I A +A TG GVM G L P +FT
Sbjct: 189 VIAAVKRAVSVPVIGNGDIGSYEQALAMMAATGCDGVMIGRGALGAPWVFT 239
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P + AP+ S+LP+RLL R YG+ LCY+ M+S H + + E+L +T +RPL++
Sbjct: 13 PPLVAAPLAGYSDLPFRLLCREYGAGLCYSEMLSCHGLVRRQPATIEMLATTAAERPLLM 72
Query: 139 Q 139
Q
Sbjct: 73 Q 73
>gi|255714144|ref|XP_002553354.1| KLTH0D14806p [Lachancea thermotolerans]
gi|238934734|emb|CAR22916.1| KLTH0D14806p [Lachancea thermotolerans CBS 6340]
Length = 348
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 130/254 (51%), Gaps = 3/254 (1%)
Query: 130 TPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD 189
T ++ PL I +T I PMV S+LP+R + R Y + YTPM+ A +++ +
Sbjct: 12 TKKNDPLHIIKTRKATHQRAVTIAGPMVRYSKLPFRQVCRHYNVDIVYTPMILAREYVRN 71
Query: 190 KKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 249
R S D PLI+Q N+ +L ++ P+CDGI IN GCP R G
Sbjct: 72 CHARMADFSSNESDSPLIVQVGVNNVTDLLRFVEMVSPYCDGIGINCGCPIKEQVREGIG 131
Query: 250 AYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307
+ L + LL+++VS+++ +V + KIRI+ + ++TV+ L AG + +HGR
Sbjct: 132 SALIYNPELLSSMVSAVKTKYGDKVRLETKIRIHDNWDQTVDLCNQLCDAGVDWITIHGR 191
Query: 308 TVDQRGMN-TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366
T R L + + IT K+ +PVIANG+ ++D + L TG GVM G L
Sbjct: 192 TRTTRSSEPVNLDAIKFITQKIKSRNVPVIANGDCFDMSDFQKILDYTGADGVMAVRGLL 251
Query: 367 YNPALFTGQTRPAW 380
NPALF G W
Sbjct: 252 DNPALFGGFKACPW 265
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 12/142 (8%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
I PMV S+LP+R + R Y + YTPM+ A +++ + R S D PLI+Q
Sbjct: 34 IAGPMVRYSKLPFRQVCRHYNVDIVYTPMILAREYVRNCHARMADFSSNESDSPLIVQVG 93
Query: 142 IFPRLGSPRFI--LAPMVDASEL----PWRLLSRR-YGSHLCYTP-----MVSAHQFIAD 189
+ RF+ ++P D + P + R GS L Y P MVSA +
Sbjct: 94 VNNVTDLLRFVEMVSPYCDGIGINCGCPIKEQVREGIGSALIYNPELLSSMVSAVKTKYG 153
Query: 190 KKLRQEILMSTPEDRPLIIQFC 211
K+R E + ++ + C
Sbjct: 154 DKVRLETKIRIHDNWDQTVDLC 175
>gi|410050487|ref|XP_001166768.2| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
4 [Pan troglodytes]
Length = 518
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 145/294 (49%), Gaps = 25/294 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST----PEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + I K++ E+L + P+DR
Sbjct: 38 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRV 97
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q +D++ A+L E GID+N+GCP+ + +G GA L
Sbjct: 98 VFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLS 157
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + ++S+L + PV+CKIRI + T+ + +ER G +AVHGR ++R
Sbjct: 158 DPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQ 217
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ S E I A+ L+IPVIANG IQ +D+E T + VM A ++NP+
Sbjct: 218 HP--VSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWNPS 275
Query: 371 LFTGQT-RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+F + RP E+ +Y+ QY + + +C L E+ RLL
Sbjct: 276 IFLKEGLRPLEEVMQKYIRYAVQYDNHYTNTK---YCLCQMLREQLESPQGRLL 326
>gi|315606822|ref|ZP_07881831.1| tRNA-dihydrouridine synthase B [Prevotella buccae ATCC 33574]
gi|315251487|gb|EFU31467.1| tRNA-dihydrouridine synthase B [Prevotella buccae ATCC 33574]
Length = 321
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 126/236 (53%), Gaps = 9/236 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
GS LAPM D +++ +R+L +R+G+ + YT VSA + K L + E+RP
Sbjct: 8 FGSRPLFLAPMEDVTDIGFRMLCKRFGAAMVYTEFVSAEALVRSIKSTVSKLTISDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G +++ EAA++ E D IDIN GCP + VA +G GA + + PL+ ++
Sbjct: 68 VGIQIYGRTVEDMVEAARIVEQARPDVIDINFGCPVKKVAGKGA-GAGMLKNVPLMLDIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV+VPV+ K R+ D N + E A L+ G Q L +HGRT Q M TG A W
Sbjct: 127 REVVKAVKVPVTVKTRLGWDSNNLIISELAEQLQDCGIQALTIHGRTRSQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375
I V+ + IP+I NG+I +A+ + GV VM P LF+ Q
Sbjct: 185 SLIGEVKNNPRIHIPIIGNGDIGSIAEAHEAFDRYGVDAVMIGRATFGQPWLFSEQ 240
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
+ GS LAPM D +++ +R+L +R+G+ + YT VSA + K L + E+R
Sbjct: 7 EFGSRPLFLAPMEDVTDIGFRMLCKRFGAAMVYTEFVSAEALVRSIKSTVSKLTISDEER 66
Query: 135 PLIIQ---RTIFPRLGSPRFI 152
P+ IQ RT+ + + R +
Sbjct: 67 PVGIQIYGRTVEDMVEAARIV 87
>gi|288925390|ref|ZP_06419324.1| TIM-barrel protein, putative, NifR3 family [Prevotella buccae D17]
gi|288337861|gb|EFC76213.1| TIM-barrel protein, putative, NifR3 family [Prevotella buccae D17]
Length = 321
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 126/236 (53%), Gaps = 9/236 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
GS LAPM D +++ +R+L +R+G+ + YT VSA + K L + E+RP
Sbjct: 8 FGSRPLFLAPMEDVTDIGFRMLCKRFGAAMVYTEFVSAEALVRSIKSTVSKLTISDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G +++ EAA++ E D IDIN GCP + VA +G GA + + PL+ ++
Sbjct: 68 VGIQIYGRTVEDMVEAARIVEQARPDVIDINFGCPVKKVAGKGA-GAGMLKNVPLMLDIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV+VPV+ K R+ D N + E A L+ G Q L +HGRT Q M TG A W
Sbjct: 127 REVVKAVKVPVTVKTRLGWDSNNLIISELAEQLQDCGIQALTIHGRTRSQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375
I V+ + IP+I NG+I +A+ + GV VM P LF+ Q
Sbjct: 185 SLIGEVKNNPRIHIPIIGNGDIGSIAEAHEAFDRYGVDAVMIGRATFGQPWLFSEQ 240
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
+ GS LAPM D +++ +R+L +R+G+ + YT VSA + K L + E+R
Sbjct: 7 EFGSRPLFLAPMEDVTDIGFRMLCKRFGAAMVYTEFVSAEALVRSIKSTVSKLTISDEER 66
Query: 135 PLIIQ---RTIFPRLGSPRFI 152
P+ IQ RT+ + + R +
Sbjct: 67 PVGIQIYGRTVEDMVEAARIV 87
>gi|424910269|ref|ZP_18333646.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. viciae USDA 2370]
gi|392846300|gb|EJA98822.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. viciae USDA 2370]
Length = 338
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 147/268 (54%), Gaps = 16/268 (5%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R +LAPM ++LP+R L+ RYG+ L T MV++ + +A++ L + P ++Q
Sbjct: 25 RAVLAPMSGVTDLPFRQLAWRYGAGLVVTEMVASRELVANRGESWARLKNVGM-VPHMVQ 83
Query: 210 FCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G ++ + EAAK+A + GI DIN+GCP G+ G+ L D +L+ +
Sbjct: 84 LAGREAHFMAEAAKIAAGNGAGIIDINMGCPAKKVTGGYSGSALMRDPDHALSLIEATVN 143
Query: 269 AVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV VPV+ K+R+ D N + AR E AG +L+ +HGRT Q G A W+ I A
Sbjct: 144 AVDVPVTLKMRLGWDENSINAPDIARRAEAAGVRLITIHGRTRMQ--FYEGRADWDAIRA 201
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT---AEGNLYNPALFTGQTRPAWE-- 381
VR+ +++P+IANG+I+ D L ++G VM A+G + PA+ G P E
Sbjct: 202 VREVISVPLIANGDIETAEDAREILRRSGADAVMVGRGAQGQPWLPAVLAGHAAPHREDI 261
Query: 382 --LASEYLDLVAQYPVR---LQYARGHV 404
+A E+ +++ ++ R L++AR H+
Sbjct: 262 PAIAVEHYEMMLEFYGREAGLRHARKHL 289
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK 120
R +LAPM ++LP+R L+ RYG+ L T MV++ + +A++
Sbjct: 25 RAVLAPMSGVTDLPFRQLAWRYGAGLVVTEMVASRELVANR 65
>gi|341615347|ref|ZP_08702216.1| tRNA-dihydrouridine synthase [Citromicrobium sp. JLT1363]
Length = 339
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 96/265 (36%), Positives = 141/265 (53%), Gaps = 15/265 (5%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE-- 202
R+ +P ILAPM +++P+R L RRYGS L T M+++ I ++ RQ + + +
Sbjct: 20 RVETP-VILAPMTGVTDMPFRTLVRRYGSGLNVTEMIASEAAI--RETRQSVQKAAWDRI 76
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTN 261
+ P+ +Q G D ++ EAAKL E + I DIN GCP G+ L + PL T
Sbjct: 77 EEPVSMQLVGCDPVSMAEAAKLQEGNGAAIIDINFGCPVRKVVGQLAGSALMREVPLATK 136
Query: 262 LVSSLRQAVQVPVSCKIRIYQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL 318
L+ + +AV VPV+ K+R+ D +N E AR+ E G +++ VHGRT +Q M G
Sbjct: 137 LMEATVKAVDVPVTVKMRMGWDHASLNAP-ELARIAEDLGVKMITVHGRTRNQ--MYKGS 193
Query: 319 ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRP 378
A W I V+ A+ IPVI NG+I + D L Q+G G+M G P L GQ
Sbjct: 194 ADWSFIRKVKDAVNIPVIVNGDICSIDDAAKALEQSGADGLMIGRGAYGRPWLL-GQVMH 252
Query: 379 AWELASEYLD--LVAQYPVRLQYAR 401
W+ + D L QY V +++ R
Sbjct: 253 WWQTGEKRADPPLNEQYAVVVEHFR 277
>gi|358056655|dbj|GAA97318.1| hypothetical protein E5Q_03996 [Mixia osmundae IAM 14324]
Length = 366
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 138/300 (46%), Gaps = 37/300 (12%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
I APMV S+LP+R+L++ YG+H+ +TPM+ A +F R P++R L
Sbjct: 31 IAAPMVRYSKLPFRMLAQEYGAHITHTPMILAQEFGLSATARDSDFTVRPDERGL----- 85
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP 201
+R RR C + + + + + +++
Sbjct: 86 ----------------------FRAKGRRIS---CLSETARTRLEMMGEAVPGDAMVADA 120
Query: 202 E---DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL 258
+ ++IQF ++ L +AA+L H D IDIN GCPQ A + G+YL
Sbjct: 121 DHLVQGCMVIQFAASEPVALADAAELVAGHVDAIDINCGCPQSWAYKECIGSYLLRQPDK 180
Query: 259 LTNLVSS--LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQ--RGM 314
+ NL+ LR PV KIRI D T + AG +L+ VHGRT +Q +
Sbjct: 181 VRNLIRGVKLRLGEDFPVHIKIRIDTDPQLTAQLMTTAVEAGAELITVHGRTRNQPSDSV 240
Query: 315 NTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG 374
L+ +H V + L +PV+ANG+I CL D L QTG VM A G + NP LF G
Sbjct: 241 PVNLSGIQHAVQVGRKLGVPVVANGDIFCLDDARRTLEQTGADAVMAARGLMSNPCLFAG 300
>gi|338813921|ref|ZP_08625990.1| tRNA-U20-dihydrouridine synthase [Acetonema longum DSM 6540]
gi|337274097|gb|EGO62665.1| tRNA-U20-dihydrouridine synthase [Acetonema longum DSM 6540]
Length = 319
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 96/309 (31%), Positives = 154/309 (49%), Gaps = 21/309 (6%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM ++ P+RLL++ L Y+ M+S + +L P+++P+ +Q
Sbjct: 13 ILAPMAGVTDPPFRLLAKEMDCGLVYSEMISDKGLVYQNTHTVHMLTINPQEKPVTVQIF 72
Query: 212 GNDSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G++ + + +AAK+ E D IDIN+GCP + G+ L L ++++S+ +AV
Sbjct: 73 GSEPEPMAQAAKIVERAGADIIDINMGCPTPKIVKNGEGSALMRKPDLAYSIMASVVEAV 132
Query: 271 QVPVSCKIRIYQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
Q PV+ KIR D VN + AR+ E+AG +AVHGRT +Q G A WE I AV
Sbjct: 133 QAPVTVKIRKGWDDSSVNAP-QIARLAEKAGVAAVAVHGRTREQ--FYAGTADWEIIRAV 189
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRPA 379
++++ IPVI NG+I+ D L QTG VM G NP +F TG+T P
Sbjct: 190 KESVAIPVIGNGDIRSGQDAVRMLGQTGCDAVMVGRGAQGNPWIFRQIVHFLATGETLPV 249
Query: 380 WELAS------EYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDL 433
++ +LD+ + R + + LP ++++RL + +D
Sbjct: 250 PTVSERLAVFLRHLDMTIAFNGEYIGIREMRRHASWYTKGLPHSAEIRLNFNQAESREDF 309
Query: 434 RKAVDMLRE 442
+ + L E
Sbjct: 310 IRVIRDLSE 318
>gi|367014111|ref|XP_003681555.1| hypothetical protein TDEL_0E01010 [Torulaspora delbrueckii]
gi|359749216|emb|CCE92344.1| hypothetical protein TDEL_0E01010 [Torulaspora delbrueckii]
Length = 349
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 100/330 (30%), Positives = 152/330 (46%), Gaps = 25/330 (7%)
Query: 127 LMSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQF 186
++S+ D PL I RT P I PMV S+LP+R + R Y + YTPM+ A +F
Sbjct: 14 ILSSRND-PLHIIRTRKTTHNRPATIAGPMVRYSKLPFRQVCRDYDVDIVYTPMILAREF 72
Query: 187 IADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRG 246
+ + R +D PLI+Q N+ +L + ++ P+CDG+ IN GCP R
Sbjct: 73 VRNNNARLADFSINEQDSPLIVQVGVNNVADLLKFVEMVAPYCDGVGINCGCPIKEQVRE 132
Query: 247 HYGAYLQDD------WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQ 300
G L + W L+N + + + KIRI++D ++TV+ R L AG
Sbjct: 133 GIGCALIYNPECYVRWSQLSNKI----MGTALRLETKIRIHEDYDQTVDLCRRLSDAGVD 188
Query: 301 LLAVHGRTVDQRGMN-TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359
+++HGRT R L + ++I K IPVIANG+ D+ T V GV
Sbjct: 189 WISIHGRTRTTRSSQPVNLEAIKYIVEKIKDKNIPVIANGDCFKKCDLREIAEVTKVDGV 248
Query: 360 MTAEGNLYNPALFTGQTRPAWELASEYLDLVAQY---PVRLQYARGHVFNMCHHLLTLPE 416
M G L NPALF G W ++ ++ P +L + HHL + E
Sbjct: 249 MAVRGLLANPALFAGYETCPWGCVEKFWYYTLEFGGLPYQL---------LQHHLYCMLE 299
Query: 417 NSDV-RLLVGKTNHIKDLRKAVDMLRERFI 445
N + + L+ + +K+ +D FI
Sbjct: 300 NMKLEKNLLKEMMDVKNTAALIDWFETNFI 329
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P I PMV S+LP+R + R Y + YTPM+ A +F+ + R +D PLI+
Sbjct: 35 PATIAGPMVRYSKLPFRQVCRDYDVDIVYTPMILAREFVRNNNARLADFSINEQDSPLIV 94
Query: 139 QRTIFPRLGSPRFI--LAPMVDA 159
Q + +F+ +AP D
Sbjct: 95 QVGVNNVADLLKFVEMVAPYCDG 117
>gi|153815945|ref|ZP_01968613.1| hypothetical protein RUMTOR_02190 [Ruminococcus torques ATCC 27756]
gi|317500709|ref|ZP_07958927.1| tRNA-dihydrouridine synthase B [Lachnospiraceae bacterium
8_1_57FAA]
gi|331089816|ref|ZP_08338709.1| hypothetical protein HMPREF1025_02292 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438499|ref|ZP_08618132.1| hypothetical protein HMPREF0990_00526 [Lachnospiraceae bacterium
1_1_57FAA]
gi|145846764|gb|EDK23682.1| TIM-barrel protein, nifR3 family [Ruminococcus torques ATCC 27756]
gi|316897903|gb|EFV19956.1| tRNA-dihydrouridine synthase B [Lachnospiraceae bacterium
8_1_57FAA]
gi|330403513|gb|EGG83071.1| hypothetical protein HMPREF1025_02292 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336019133|gb|EGN48865.1| hypothetical protein HMPREF0990_00526 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 319
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 129/228 (56%), Gaps = 7/228 (3%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R++L PM ++LP+RLL + G+ L MVSA + K ++++ PE++P+ +Q
Sbjct: 14 RYLLGPMAGVTDLPFRLLCKEQGAGLLGMEMVSAKAILYQNKNTEKLMEIHPEEQPVSLQ 73
Query: 210 FCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G+D K ++E AK E I DIN+GCP + G+ L + L+ +V+++ +
Sbjct: 74 LFGSDPKIMSEMAKRIEERPFAILDINMGCPVPKVVKNGEGSALMKNPSLVYEIVNAIVK 133
Query: 269 AVQVPVSCKIRIYQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
A++ PV+ KIR D VN VE AR E AG +AVHGRT +Q +G A W+ I
Sbjct: 134 AIEKPVTVKIRKGFDDAHVN-AVEVARAAEEAGASAVAVHGRTREQ--YYSGEADWDIIR 190
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
V++A++IPVI NG++ E + TG G+M A G NP +F+
Sbjct: 191 QVKEAVSIPVIGNGDVTTPEKAEELVQTTGCDGIMIARGAQGNPWIFS 238
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 42/240 (17%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
R++L PM ++LP+RLL + G+ L MVSA + K ++++ PE++P+ +Q
Sbjct: 14 RYLLGPMAGVTDLPFRLLCKEQGAGLLGMEMVSAKAILYQNKNTEKLMEIHPEEQPVSLQ 73
Query: 140 RTIFPRLGSPRFILAPMVD-ASELPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQ 194
+F GS I++ M E P+ +L G C P V + + L
Sbjct: 74 --LF---GSDPKIMSEMAKRIEERPFAILDINMG---CPVPKVVKNGEGSALMKNPSLVY 125
Query: 195 EILMSTPE--DRPLIIQF-CGNDSK--NLTEAAKLAEPHCDGIDINIGCPQMVAKRG--- 246
EI+ + + ++P+ ++ G D N E A+ AE VA G
Sbjct: 126 EIVNAIVKAIEKPVTVKIRKGFDDAHVNAVEVARAAEE---------AGASAVAVHGRTR 176
Query: 247 --HYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
+Y + DW +++ +++AV +PV DV + +++ GC + +
Sbjct: 177 EQYYSG--EADW----DIIRQVKEAVSIPVIGN----GDVTTPEKAEELVQTTGCDGIMI 226
>gi|168830124|gb|ACA34352.1| tRNA-dihydrouridine synthase [Paenibacillus polymyxa]
Length = 342
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 85/224 (37%), Positives = 124/224 (55%), Gaps = 6/224 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ +LAPM +RL+++ +G+ L MVS I K +E+L ++PL +Q
Sbjct: 12 QVVLAPMAGVCNPAFRLIAKEFGTGLVCAEMVSDKAIIHGNKRTREMLFVDEREKPLSLQ 71
Query: 210 FCGNDSKNLTEAAKLA--EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G D K+L EAAK+ E + D IDIN+GCP + GA D + +VS++
Sbjct: 72 IFGGDRKSLVEAAKVVNQETNADIIDINMGCPVPKVTKCDAGARWLLDPNKIYEMVSAVV 131
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
++V PV+ K+RI D VE AR +ERAG Q ++VHGRT +Q + TG A+W+ I
Sbjct: 132 ESVSKPVTVKMRIGWDSEHIYAVENARAVERAGGQAVSVHGRTREQ--LYTGHANWDIIK 189
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
V++A++IPVI NG++ D L T GVM G L NP
Sbjct: 190 EVKEAVSIPVIGNGDVASPEDARRMLDLTNCDGVMIGRGALGNP 233
>gi|296131768|ref|YP_003639015.1| nifR3 family TIM-barrel protein [Thermincola potens JR]
gi|296030346|gb|ADG81114.1| TIM-barrel protein, nifR3 family [Thermincola potens JR]
Length = 340
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 100/311 (32%), Positives = 154/311 (49%), Gaps = 21/311 (6%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R + APM ++ +RL++ GS L T MVSA + + + +L + E P+ +Q
Sbjct: 24 RVVSAPMAGVTDKAYRLIAELAGSGLVCTEMVSATALRYNSERTKTMLDLSGEKGPISVQ 83
Query: 210 FCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
GN + ++ AAK AE I DIN+GCP + G L D PL ++S++ +
Sbjct: 84 IFGNQPELMSRAAKFAETQGAAIIDINMGCPAPKVVKNFEGCALMRDLPLAREIMSAVVK 143
Query: 269 AVQVPVSCKIRIYQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AVQ+PV+ K+R D VN VE A+M + G + VHGRT Q +G A W+ I
Sbjct: 144 AVQIPVTVKMRKGWDEESVN-AVELAKMAQETGIAAVTVHGRTRGQ--FYSGKADWDIIA 200
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTR 377
V++A+ IPVI NG+I A + QTG VM G L NP LF TG+
Sbjct: 201 RVKEAVQIPVIGNGDIFEPVHALAMMKQTGCDAVMIGRGALGNPWLFSRTVKLLETGEIP 260
Query: 378 PA------WELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIK 431
P E+A ++L L + + R ++ ++ L E + VR V + ++
Sbjct: 261 PEPSIDERLEMAKKHLQLAVAFKGEYRAVREMRKHIAWYIKGLREAARVREKVNQAVSVE 320
Query: 432 DLRKAVDMLRE 442
+L + +D +E
Sbjct: 321 ELVRLLDQYKE 331
>gi|393718420|ref|ZP_10338347.1| tRNA-dihydrouridine synthase [Sphingomonas echinoides ATCC 14820]
Length = 321
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 125/230 (54%), Gaps = 6/230 (2%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
+ SP ILAPM +++P+R L RRYGS L T MV++ I + + + P + P
Sbjct: 3 IASP-VILAPMTGVTDMPFRTLVRRYGSGLNVTEMVASQAAIRETRQSLQKAAWHPIEDP 61
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
+ +Q G + EAAKL+E I DIN+GCP G G+ L D ++
Sbjct: 62 VSMQLVGCTPYEMGEAAKLSEDRGAAIIDINMGCPVRKVTNGDAGSALMRDLDTAGAIIK 121
Query: 265 SLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
+ +AV VPV+ K+R+ D + + A++ + G +L+ VHGRT +Q M G A W
Sbjct: 122 GVVEAVSVPVTLKMRMGWDHSSLNAPQLAKIAQDLGVKLVTVHGRTRNQ--MYKGNADWA 179
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
I +V+ A+TIPVIANG+I + D EA L Q+G GVM G+ P L
Sbjct: 180 FIRSVKDAVTIPVIANGDICSIEDAEAALDQSGADGVMIGRGSYGRPWLL 229
Score = 41.2 bits (95), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
+ SP ILAPM +++P+R L RRYGS L T MV++ I + + + P + P
Sbjct: 3 IASP-VILAPMTGVTDMPFRTLVRRYGSGLNVTEMVASQAAIRETRQSLQKAAWHPIEDP 61
Query: 136 LIIQ 139
+ +Q
Sbjct: 62 VSMQ 65
>gi|149699255|ref|XP_001498775.1| PREDICTED: tRNA-dihydrouridine synthase 2-like isoform 1 [Equus
caballus]
Length = 493
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 136/264 (51%), Gaps = 22/264 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST----PEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + + K++ E+L + P+DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPDDRV 72
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
+I Q +D++ A+L E GID+N+GCP+ + +G GA L
Sbjct: 73 VFRTCEREQSRVIFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLS 132
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + ++S+L + + PV+CKIRI + T+ + +ER G +AVHGR ++R
Sbjct: 133 DPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQ 192
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ S E I A+ + L+IPVIANG IQ D+E T + VM A ++NP+
Sbjct: 193 HP--VSCEAIKAIAETLSIPVIANGGSYDHIQEYLDIEDFRQATAASSVMVARAAMWNPS 250
Query: 371 LFTGQT-RPAWELASEYLDLVAQY 393
+F + RP E+ +Y+ QY
Sbjct: 251 IFLKEGLRPLEEVMKKYIRYAVQY 274
>gi|344290919|ref|XP_003417184.1| PREDICTED: tRNA-dihydrouridine synthase 2 [Loxodonta africana]
Length = 493
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 145/294 (49%), Gaps = 25/294 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST----PEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + + K++ E+L + P+DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPDDRV 72
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q +D++ A+L E GID+N+GCP+ + +G GA L
Sbjct: 73 VFRTCAREQSRVVFQLGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLS 132
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + ++S+L + PV+CKIRI + T+ + +ER G +AVHGR +QR
Sbjct: 133 DPDKIEKILSTLVKGTCRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREQRPQ 192
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ S E I A+ + L+IPVIANG IQ D+E T + VM A ++NP+
Sbjct: 193 HP--VSCEAIKAIAETLSIPVIANGGSHDHIQGYLDIEDFRQTTAASSVMVARAAMWNPS 250
Query: 371 LFTGQT-RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+F + RP E+ +Y+ QY + + +C L E+ RLL
Sbjct: 251 IFLKEGLRPLEEVMQKYIRYAVQYD---NHYTNTKYCLCQMLREQLESPQGRLL 301
>gi|393771687|ref|ZP_10360156.1| dihydrouridine synthase TIM-barrel protein nifR3 [Novosphingobium
sp. Rr 2-17]
gi|392722939|gb|EIZ80335.1| dihydrouridine synthase TIM-barrel protein nifR3 [Novosphingobium
sp. Rr 2-17]
Length = 348
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/302 (32%), Positives = 151/302 (50%), Gaps = 17/302 (5%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM S+LP+R + R +GS L T M+++ I + ++ + M + P+ +Q
Sbjct: 25 VLAPMTGVSDLPFRKMVRGFGSGLNVTEMIASPAAIRETRVSLQKAMWDVIEDPVSMQLV 84
Query: 212 GNDSKNLTEAAKLAEPHCDG-IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G + + + EAAKL E IDIN+GCP G G+ L D PL T L+ + +AV
Sbjct: 85 GCEPEQMGEAAKLVEDRGAAIIDINMGCPVRKVVNGDAGSALMRDVPLATRLIEATVKAV 144
Query: 271 QVPVSCKIRIY--QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+VPV+ K+R+ D E AR+ E G +++ VHGRT +Q M G A W + V+
Sbjct: 145 KVPVTVKMRMGWCHDSLNAPELARIAEDLGAKMITVHGRTRNQ--MYKGEADWAFVRRVK 202
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW--ELASEY 386
A++IPVI NG+I + D L Q+G GVM G+ P F Q W + S
Sbjct: 203 DAVSIPVIVNGDICTVEDAANALDQSGADGVMIGRGSYGRP-WFLAQVMQWWRGQAISAD 261
Query: 387 LDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTN-HIKDLRKAVDMLRE-RF 444
D QY + R H M H E++ V++ +IK +R + + + F
Sbjct: 262 PDFGQQYEI----IRTHYEAMLDH---YGEDTGVKMARKHLGWYIKGIRGSAEFRNKINF 314
Query: 445 ID 446
+D
Sbjct: 315 VD 316
>gi|296820214|ref|XP_002849907.1| tRNA-dihydrouridine synthase 1 [Arthroderma otae CBS 113480]
gi|238837461|gb|EEQ27123.1| tRNA-dihydrouridine synthase 1 [Arthroderma otae CBS 113480]
Length = 573
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/370 (27%), Positives = 159/370 (42%), Gaps = 111/370 (30%)
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
DRPLI+QFC N+ L AA+ E +CD D P ++ K L
Sbjct: 164 DRPLIVQFCANNPDELLRAARHVEGYCDAED-----PDLIYK-----------------L 201
Query: 263 VSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
++ L + +PV+ K RI + KT+EYA+M+ AG +L+VHGR +Q+G NTG+A+WE
Sbjct: 202 INKLHAELSIPVTAKFRILETKEKTLEYAKMILSAGASILSVHGRRREQKGHNTGVANWE 261
Query: 323 HITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW 380
+I +R L + ANGNI D+ CL TG GVM+AEGNL +P +F+ P
Sbjct: 262 YIRYLRDNLPPETVIFANGNILNHGDIRDCLESTGADGVMSAEGNLSDPTIFSTPPPPGS 321
Query: 381 E------------------LASEYLDLV-------------------------------- 390
E + +Y+DL+
Sbjct: 322 EGRIYWRGRDGRGGYRLDYVLRQYIDLIYKYVLEQEPPQREPLYHPDDPALESSSRADEA 381
Query: 391 ----AQYPVR----------------LQYARGHVFNMCHHLLTLPENSDVRLLV-----G 425
AQ P R L +GH+F + HL++ +D+R + G
Sbjct: 382 AEDEAQQPPRKKQKQGRRMKKATSTNLTTMQGHLFQLLRHLIS--HRTDIRDALARCHGG 439
Query: 426 KTNHIKDLRKAVDMLRERFIDYHEGRKLW---PPPNYP--MSSNHHNLSL-----PPWIC 475
+ + + VD ++ + +E W P + P + S ++ P W+C
Sbjct: 440 DMPQFEKVVRLVDQAVKQGMQEYEQNPSWQHITPASKPGVVKSEESKATMEKYQRPWWVC 499
Query: 476 QPYVRPTPEQ 485
QP++RP PE+
Sbjct: 500 QPFIRPLPEE 509
>gi|224372117|ref|YP_002606489.1| tRNA-dihydrouridine synthase B [Nautilia profundicola AmH]
gi|223588677|gb|ACM92413.1| tRNA-dihydrouridine synthase B [Nautilia profundicola AmH]
Length = 313
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 152/307 (49%), Gaps = 15/307 (4%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLI 207
SP F LAP+ ++LP+R + +++G + ++ M + + + Q+++ +P + P
Sbjct: 10 SPYFFLAPLAGYTDLPFRSVVKKFGCDMTFSEMTNVNAIAYQNEKTQKMMEKSPLENPYF 69
Query: 208 IQFCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDW--PLLTNLV 263
+Q N+ +N +A ++ DGIDIN+GCP A+R +G L D L +V
Sbjct: 70 VQIAANNVENAVKAVEIINELNWIDGIDINLGCPVNKARRSGFGGVLLKDENRDFLKEVV 129
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
++ + + PVS K+RI D + + A++LE G L +HGRTV Q M G A ++
Sbjct: 130 GTIVKTSKKPVSAKMRIGFDKSVVEDRAKLLEDLGIVFLTIHGRTVKQ--MYKGEADYDE 187
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I A+ IPVIANG+I + L TG +GV G + P +F + +
Sbjct: 188 IKKGVNAVKIPVIANGDITDYEKAKYVLEYTGASGVSIGRGAVGKPWIFLEMKQQGNITS 247
Query: 384 SEYLDLVAQYPVRLQYARGH----VFNMCHHLLT--LPENSDVRLLVGKTNHIKDLRKAV 437
+ +++ ++ ++ Y G +F H + +P+ S+ R K N +KD A
Sbjct: 248 EQKKEVILEHFNQMVYWYGEYGVILFRKHAHAYSKGIPKASEFR---SKMNEVKDPEVAR 304
Query: 438 DMLRERF 444
++ E F
Sbjct: 305 KLIEEYF 311
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 66 STARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE 125
ST +SD SP F LAP+ ++LP+R + +++G + ++ M + + + Q+
Sbjct: 4 STLKSD------SPYFFLAPLAGYTDLPFRSVVKKFGCDMTFSEMTNVNAIAYQNEKTQK 57
Query: 126 ILMSTPEDRPLIIQ 139
++ +P + P +Q
Sbjct: 58 MMEKSPLENPYFVQ 71
>gi|302785397|ref|XP_002974470.1| hypothetical protein SELMODRAFT_174143 [Selaginella moellendorffii]
gi|300158068|gb|EFJ24692.1| hypothetical protein SELMODRAFT_174143 [Selaginella moellendorffii]
Length = 319
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 144/293 (49%), Gaps = 28/293 (9%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS---------- 199
+ ILAPMV LP+R+L+ YG+ L Y + H+ + ++ ++L S
Sbjct: 10 KLILAPMVRVGTLPFRMLAAGYGADLTYGEEIVDHKMLKCSRVVNDVLGSIDFVEKGTND 69
Query: 200 ------TPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 253
E ++ Q +D A+L +DIN+GCP+ + G G+ L
Sbjct: 70 VVFRTCKAERDHVVFQMGTSDPYRALTVAQLLCKDIAAVDINMGCPKPFSVTGGMGSALL 129
Query: 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313
L++ ++++LR+ + +PV+CKIR+ + +TVE AR +E+ G +AVHGR + R
Sbjct: 130 SQPELVSEILTTLRRNLDIPVTCKIRLLKSTQETVELARRIEKTGVSAIAVHGRRIPDRP 189
Query: 314 MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ A W+ I V AL+IPVIANG++ D+ A TG + VM A G L+N ++F
Sbjct: 190 KDR--AKWDGIADVVSALSIPVIANGDVFEPPDIPRIKAATGASSVMVARGALWNASIFR 247
Query: 374 GQTRPAWELASEYLDLV--AQYPVR--------LQYARGHVFNMCHHLLTLPE 416
+ + WE + + + +Y V L+ G + C LL L E
Sbjct: 248 PEGKLDWEECILWENDIKFTKYTVNNMIIRNSSLESPEGRAVHKCQSLLHLAE 300
>gi|398383004|ref|ZP_10541081.1| putative TIM-barrel protein, nifR3 family [Sphingobium sp. AP49]
gi|397725714|gb|EJK86162.1| putative TIM-barrel protein, nifR3 family [Sphingobium sp. AP49]
Length = 340
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/311 (32%), Positives = 148/311 (47%), Gaps = 32/311 (10%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PEDRPLIIQ 209
ILAPM +++P+R L RR+GS L T M++ I ++ RQ + + P + P+ +Q
Sbjct: 20 ILAPMTGVTDMPFRTLVRRFGSGLNVTEMIATAAMI--RETRQSLQKAAWHPLEEPVSMQ 77
Query: 210 FCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G + EAAKL A+ IDIN+GCP G G+ L D PL L+ + +
Sbjct: 78 LAGCSPSEMAEAAKLNADRGAAIIDINMGCPVKKVVNGDAGSALMRDLPLAAALIEATVK 137
Query: 269 AVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV VPV+ K+R+ D E A + E G +L+ VHGRT Q M G A W + +
Sbjct: 138 AVDVPVTVKMRMGWDHGSLNAPELAHIAEDLGAKLITVHGRTRCQ--MYKGSADWGFVRS 195
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRP 378
V++A+ +PVI NG+I + D E L Q+G GVM G P L TG+ R
Sbjct: 196 VKEAVKLPVIVNGDICSIEDAETALDQSGADGVMIGRGAYGRPWLLGQVMHWFATGERRD 255
Query: 379 AWELASEYLDLVAQYPVRLQY---------ARGHVFNMCHHLLTLPENSDVRLLVGKTNH 429
LA +Y + Y + L + AR H+ L E + N
Sbjct: 256 DPSLAEQYDLITDHYRMMLDHYDNLTGVNMARKHIGWYTKGLTGSAEFRNA------VNQ 309
Query: 430 IKDLRKAVDML 440
D ++ +DML
Sbjct: 310 EADAQRVLDML 320
>gi|355670428|ref|ZP_09057283.1| hypothetical protein HMPREF9469_00320 [Clostridium citroniae
WAL-17108]
gi|354816500|gb|EHF01088.1| hypothetical protein HMPREF9469_00320 [Clostridium citroniae
WAL-17108]
Length = 331
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 162/314 (51%), Gaps = 30/314 (9%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM ++LP+RLL R G+ T MVSA + + + +E+L P++RP +Q
Sbjct: 15 ILAPMAGVTDLPFRLLCREQGAGCVVTEMVSAKAILYNNRNTKELLQIHPQERPAAVQLF 74
Query: 212 GNDSKNLTE-AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G+D + + E AA++ + D ID+N+GCP G+ L D +++++ +AV
Sbjct: 75 GSDPEIMGEIAARIEDGPYDFIDVNMGCPVPKIVNNGEGSALMKDPKKAGEILTAMVRAV 134
Query: 271 QVPVSCKIRI-YQD--VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
+ PV+ K R + D VN VE+ARM E G +AVHGRT +Q +G A W+ I V
Sbjct: 135 KKPVTVKFRKGFNDSCVN-GVEFARMAESCGVAAVAVHGRTREQ--YYSGRADWDIIRRV 191
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRPA 379
++A+ IPVI NG+I D + + +TG G+M A G NP +F TG+ P
Sbjct: 192 KEAVKIPVIGNGDIFTPQDAKRMMEETGCDGLMVARGAKGNPWIFRRINHYLDTGELLPE 251
Query: 380 ------WELASEYLDLVAQYP---VRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHI 430
E+ + ++ +Y ++ RGH M + +P ++ +R + N +
Sbjct: 252 PSIEEIREMVLRHGRMLVEYKGESTAMREMRGH---MAWYTKGMPHSAALR---NEINQV 305
Query: 431 KDLRKAVDMLRERF 444
+ L ++L +R
Sbjct: 306 ETLEGLAELLNQRI 319
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 103/234 (44%), Gaps = 34/234 (14%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
ILAPM ++LP+RLL R G+ T MVSA + + + +E+L P++RP +Q
Sbjct: 15 ILAPMAGVTDLPFRLLCREQGAGCVVTEMVSAKAILYNNRNTKELLQIHPQERPAAVQ-- 72
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQEIL 197
+F P + + P+ + G C P + + D K EIL
Sbjct: 73 LFG--SDPEIMGEIAARIEDGPYDFIDVNMG---CPVPKIVNNGEGSALMKDPKKAGEIL 127
Query: 198 --MSTPEDRPLIIQF--CGNDS-KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 252
M +P+ ++F NDS N E A++AE C + + + +Y
Sbjct: 128 TAMVRAVKKPVTVKFRKGFNDSCVNGVEFARMAE-SCGVAAVAV---HGRTREQYYSG-- 181
Query: 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRIY--QDVNKTVEYARMLERAGCQLLAV 304
+ DW +++ +++AV++PV I+ QD RM+E GC L V
Sbjct: 182 RADW----DIIRRVKEAVKIPVIGNGDIFTPQDAK------RMMEETGCDGLMV 225
>gi|333378038|ref|ZP_08469771.1| hypothetical protein HMPREF9456_01366 [Dysgonomonas mossii DSM
22836]
gi|332884058|gb|EGK04338.1| hypothetical protein HMPREF9456_01366 [Dysgonomonas mossii DSM
22836]
Length = 331
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 101/328 (30%), Positives = 166/328 (50%), Gaps = 32/328 (9%)
Query: 145 RLGSPRF-----ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 199
++G+ +F LAPM D +++ +RL+ +++G+ + YT VS+ I Q L
Sbjct: 2 KIGNIKFSENPVFLAPMEDVTDMGFRLMCKQFGADMVYTEFVSSDALIRHVNKTQAKLTI 61
Query: 200 TPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGI-DINIGCP-QMVAKRGHYGAYLQDDWP 257
+ E+RP+ IQ G + + EAAK+ E I DIN GCP + VA +G G+ +
Sbjct: 62 SEEERPVAIQIYGREVDAMVEAAKICEEANPNILDINFGCPVKKVAGKG-AGSGMMKTPE 120
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMN 315
L+ + +++ +AV++PV+ K R+ D VE A L+ G Q L +HGRT Q M
Sbjct: 121 LMVEITAAVVKAVKIPVTVKTRLGWDHESKIIVELAEQLQDVGIQALTIHGRTRSQ--MY 178
Query: 316 TGLASWEHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF- 372
TG A WE I V+ + IP++ NG++ + +TGV VM G++ +P +F
Sbjct: 179 TGDADWELIGDVKNNPRIHIPIVGNGDVTSPEICKRRFDETGVDAVMIGRGSIGSPWIFE 238
Query: 373 -------TGQTRPAWELASEYLDLVAQY---PVRLQYARGHVFNMCHHLLT------LPE 416
TG+T P E YLD++ + V RG + + HL LP+
Sbjct: 239 EVKHYLRTGETLPKKEF-EWYLDVLKEMIRKNVVHSGERGGIIHSRRHLAASSLFKGLPD 297
Query: 417 NSDVRLLVGKTNHIKDLRKAVDMLRERF 444
VR+ + +T + +L + +D + E+F
Sbjct: 298 FKKVRVAMLRTESVDELFEIMDTIPEQF 325
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 75 QLGSPRF-----ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
++G+ +F LAPM D +++ +RL+ +++G+ + YT VS+ I Q L
Sbjct: 2 KIGNIKFSENPVFLAPMEDVTDMGFRLMCKQFGADMVYTEFVSSDALIRHVNKTQAKLTI 61
Query: 130 TPEDRPLIIQ 139
+ E+RP+ IQ
Sbjct: 62 SEEERPVAIQ 71
>gi|110625595|ref|NP_079794.1| tRNA-dihydrouridine(20) synthase [NAD(P)+]-like [Mus musculus]
gi|73620836|sp|Q9D7B1.1|DUS2L_MOUSE RecName: Full=tRNA-dihydrouridine(20) synthase [NAD(P)+]-like;
AltName: Full=tRNA-dihydrouridine synthase 2-like
gi|12844161|dbj|BAB26260.1| unnamed protein product [Mus musculus]
gi|109733553|gb|AAI16937.1| Dihydrouridine synthase 2-like (SMM1, S. cerevisiae) [Mus musculus]
gi|109733887|gb|AAI16935.1| Dihydrouridine synthase 2-like (SMM1, S. cerevisiae) [Mus musculus]
gi|148679394|gb|EDL11341.1| mCG20459, isoform CRA_b [Mus musculus]
Length = 493
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 144/294 (48%), Gaps = 25/294 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST----PEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + + K++ E+L + P+DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPDDRV 72
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q +D++ A+L E GID+N+GCP+ + +G GA L
Sbjct: 73 VFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLS 132
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + ++S+L + PV+CKIRI + T+ + +ER G +AVHGR D+R
Sbjct: 133 DPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGRNRDERPQ 192
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ S E I A+ + L+IPVIANG IQ D+E T + VM A ++NP+
Sbjct: 193 HP--VSCEVIRAIAETLSIPVIANGGSHDHIQQHVDIEDFRQATAASSVMVARAAMWNPS 250
Query: 371 LFTGQT-RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+F RP E+ +Y+ QY + + +C L E+ RLL
Sbjct: 251 IFLKDGLRPLEEVMQKYIRYAVQYD---NHYTNTKYCLCQMLREQLESPQGRLL 301
>gi|424894921|ref|ZP_18318495.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. trifolii WSM2297]
gi|393179148|gb|EJC79187.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. trifolii WSM2297]
Length = 339
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 139/257 (54%), Gaps = 13/257 (5%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R +LAPM +++P+R L+ R+G+ L T MV++ + + D L + RP ++Q
Sbjct: 28 RVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRELVNDTAESWSRLKAAGF-RPHMVQ 86
Query: 210 FCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G ++ + EAAK+A H D IDIN+GCP G+ G+ L D L+ + +
Sbjct: 87 LAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGYSGSALMRDPDHALGLIEATVK 146
Query: 269 AVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV +PV+ K+R+ D N E AR E AG QL+ +HGRT Q G A W+ I
Sbjct: 147 AVDIPVTLKMRLGWDENSINAPEIARRAEEAGIQLVTIHGRTRMQ--FYEGRADWDAIRP 204
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA---EGNLYNPALFTGQTRPAWELA 383
VR+A++IP+IANG+++ D + L ++G VM +G ++ + +G P L+
Sbjct: 205 VREAISIPLIANGDVETAEDAQEILRRSGADAVMIGRGCQGRPWHAGVISGAAEP---LS 261
Query: 384 SEYLDL-VAQYPVRLQY 399
E D+ V Y + L++
Sbjct: 262 HEIADIAVEHYRMMLEF 278
>gi|423313199|ref|ZP_17291135.1| tRNA dihydrouridine synthase A [Bacteroides vulgatus CL09T03C04]
gi|392686413|gb|EIY79719.1| tRNA dihydrouridine synthase A [Bacteroides vulgatus CL09T03C04]
Length = 329
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 157/326 (48%), Gaps = 35/326 (10%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D ++ +RL+ +++G+ + YT VSA I + L E+RP
Sbjct: 8 LGRYPIFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSADALIRSVGKTMQKLNINDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D++ + EAAK+A E H D +DIN GCP + VA +G GA + + PL+ +
Sbjct: 68 VAIQIYGRDTETMVEAAKIAEEAHPDILDINFGCPVKRVAGKGA-GAGMLQNIPLMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
++ V++PV+ K R+ D V+ A L+ G + L +HGRT Q M TG A W
Sbjct: 127 RAVVDTVKIPVTVKTRLGWDNEHKIIVDLAEQLQDCGIEALTIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I V+K + IP+I NG+I + C Q GV +M + P +F
Sbjct: 185 SLIGEVKKNPRMHIPIIGNGDITTPQRAKECFDQYGVDAIMIGRASFGRPWIFKEVKHYI 244
Query: 373 -TGQTRPA----WELA---SEYLDLVAQYPVRLQYARGHVFNMCHHLLT------LPENS 418
TG+ PA W L E LD V L R + ++ HL +P
Sbjct: 245 ETGKELPALSFEWRLNVLRQEVLD-----SVNLLDERRGILHVRRHLAASPLFKGIPNFK 299
Query: 419 DVRLLVGKTNHIKDLRKAVDMLRERF 444
+ R+ + + +K+L +D +R +
Sbjct: 300 ETRIAMLRAETVKELFSILDYIRGNY 325
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LG LAPM D ++ +RL+ +++G+ + YT VSA I + L E+RP
Sbjct: 8 LGRYPIFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSADALIRSVGKTMQKLNINDEERP 67
Query: 136 LIIQ 139
+ IQ
Sbjct: 68 VAIQ 71
>gi|302390915|ref|YP_003826735.1| tRNA-U20-dihydrouridine synthase [Acetohalobium arabaticum DSM
5501]
gi|302202992|gb|ADL11670.1| tRNA-U20-dihydrouridine synthase [Acetohalobium arabaticum DSM
5501]
Length = 322
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 125/224 (55%), Gaps = 5/224 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM ++LP+R + + +G L T MVSA + +E+L + ++RP+ +Q
Sbjct: 13 MLAPMAGVTDLPFRRIVKEFGCGLVCTEMVSAKGLVYGSSRTEELLTISDQERPVSLQIF 72
Query: 212 GNDSKNLTEAA-KLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G++ + + EA K+ E D ID+N+GCP +G G+ L + L+ +V +L +A
Sbjct: 73 GSEPEIMAEAVEKIEEYRPDIIDVNLGCPTPKIVKGGAGSVLMKEPDLVGRIVDALVRAT 132
Query: 271 QVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
++P++ K+R D + VE A+ E +G Q +AVHGRT +Q G A W I V+
Sbjct: 133 EIPITVKMRKGWDEDHVNAVEIAQTAEESGVQAVAVHGRTREQ--FYKGEADWNIIKEVK 190
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
+A+ +PVI NG+I D E + TG GVM A G NP +F
Sbjct: 191 EAVEVPVIGNGDIFSPQDAEEMIDTTGCDGVMIARGAQGNPWIF 234
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 106/249 (42%), Gaps = 59/249 (23%)
Query: 74 TQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPED 133
+L +P +LAPM ++LP+R + + +G L T MVSA + +E+L + ++
Sbjct: 6 VELDNP-VMLAPMAGVTDLPFRRIVKEFGCGLVCTEMVSAKGLVYGSSRTEELLTISDQE 64
Query: 134 RPLIIQRTIFPRLGSPRFILAPMVDASELPWR--LLSRRYGSHLCYTPMVSAHQFIADKK 191
RP+ +Q IF GS I+A V+ E +R ++ G C TP + K
Sbjct: 65 RPVSLQ--IF---GSEPEIMAEAVEKIE-EYRPDIIDVNLG---CPTPKIV-------KG 108
Query: 192 LRQEILMSTPE-------------DRPLIIQF---CGNDSKNLTEAAKLAEPHCDGIDIN 235
+LM P+ + P+ ++ D N E A+ AE G+
Sbjct: 109 GAGSVLMKEPDLVGRIVDALVRATEIPITVKMRKGWDEDHVNAVEIAQTAEES--GV--- 163
Query: 236 IGCPQMVAKRGHYGAYL---QDDWPLLTNLVSSLRQAVQVPVSCKIRIY--QDVNKTVEY 290
Q VA G + DW N++ +++AV+VPV I+ QD +
Sbjct: 164 ----QAVAVHGRTREQFYKGEADW----NIIKEVKEAVEVPVIGNGDIFSPQDAEE---- 211
Query: 291 ARMLERAGC 299
M++ GC
Sbjct: 212 --MIDTTGC 218
>gi|427411892|ref|ZP_18902094.1| tRNA dihydrouridine synthase A [Sphingobium yanoikuyae ATCC 51230]
gi|425710182|gb|EKU73205.1| tRNA dihydrouridine synthase A [Sphingobium yanoikuyae ATCC 51230]
Length = 340
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/311 (33%), Positives = 153/311 (49%), Gaps = 32/311 (10%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PEDRPLIIQ 209
ILAPM +++P+R L RR+GS L T M+++ I ++ RQ + + P + P+ +Q
Sbjct: 20 ILAPMTGVTDMPFRTLVRRFGSGLNVTEMIASAAMI--RETRQSLQKAAWHPLEEPVSMQ 77
Query: 210 FCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G + EAAKL A+ IDIN+GCP G G+ L D PL L+ + +
Sbjct: 78 LAGCAPTEMAEAAKLNADRGAAIIDINMGCPVKKVVNGDAGSALMRDLPLAAALIKATVE 137
Query: 269 AVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV VPV+ K+R+ D + E A + E G +L+ VHGRT Q M G A W + +
Sbjct: 138 AVDVPVTVKMRMGWDHSSLNAPELAHIAEDLGAKLITVHGRTRCQ--MYKGSADWGFVRS 195
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRP 378
V+ A+ +PVI NG+I + D E L Q+G GVM G P L TG+ R
Sbjct: 196 VKDAVKLPVIVNGDICSIEDAETALDQSGADGVMIGRGAYGKPWLLGQVMHWFATGERRA 255
Query: 379 AWELASEYLDLVAQYPVRLQY---------ARGHVFNMCHHLLTLPENSDVRLLVGKTNH 429
LA +Y + Y + L + AR H+ + L +++ R V N
Sbjct: 256 DPSLAEQYNLITEHYRMMLDHYDNMTGVNMARKHI---GWYTKGLTGSAEFRNTV---NQ 309
Query: 430 IKDLRKAVDML 440
D ++ +DML
Sbjct: 310 EADAQRVLDML 320
>gi|333384100|ref|ZP_08475743.1| hypothetical protein HMPREF9455_03909 [Dysgonomonas gadei ATCC
BAA-286]
gi|332826846|gb|EGJ99646.1| hypothetical protein HMPREF9455_03909 [Dysgonomonas gadei ATCC
BAA-286]
Length = 330
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 160/320 (50%), Gaps = 28/320 (8%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLI 207
+P F LAPM D +++ +RL+ +R+G+ + YT VS+ I Q L + E+RP+
Sbjct: 11 NPVF-LAPMEDVTDMGFRLMCKRFGADMVYTEFVSSDALIRHVNKTQAKLTISEEERPVA 69
Query: 208 IQFCGNDSKNLTEAAKLAEPHC-DGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSS 265
IQ G + + EAAK+ E D +DIN GCP + VA +G G+ + L+ + ++
Sbjct: 70 IQIYGREVDAMVEAAKICEEASPDILDINFGCPVKKVAGKG-AGSGMMRTPELMVEITAA 128
Query: 266 LRQAVQVPVSCKIRIY--QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ +AV +PV+ K R+ D VE A L+ G Q L +HGRT Q M +G A W
Sbjct: 129 VVKAVNIPVTVKTRLGWDNDSKIIVELAEQLQDTGIQALTLHGRTRAQ--MYSGEADWSL 186
Query: 324 ITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------T 373
I AV+ + IP+I NG++ + +TGV VM G++ P +F T
Sbjct: 187 IGAVKNNPRMHIPIIGNGDVTTPEICKRRFDETGVDAVMIGRGSIGGPWIFEEVKHYLAT 246
Query: 374 GQTRPAWELASEYLDLVAQYPVRL---QYARGHVFNMCHHLL------TLPENSDVRLLV 424
G+ P E + YLD++ R RG + + HL +P+ VR+ +
Sbjct: 247 GELMPKKEF-TWYLDVLKDLVSRNIAHSGERGGIIHSRRHLAGSPVFKGIPDFKKVRVSM 305
Query: 425 GKTNHIKDLRKAVDMLRERF 444
+T + DL +D L E+F
Sbjct: 306 LRTESVDDLFAIIDNLPEQF 325
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 78 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLI 137
+P F LAPM D +++ +RL+ +R+G+ + YT VS+ I Q L + E+RP+
Sbjct: 11 NPVF-LAPMEDVTDMGFRLMCKRFGADMVYTEFVSSDALIRHVNKTQAKLTISEEERPVA 69
Query: 138 IQ 139
IQ
Sbjct: 70 IQ 71
>gi|339252522|ref|XP_003371484.1| dihydrouridine synthase (Dus) superfamily [Trichinella spiralis]
gi|316968258|gb|EFV52559.1| dihydrouridine synthase (Dus) superfamily [Trichinella spiralis]
Length = 355
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 86/120 (71%), Gaps = 1/120 (0%)
Query: 180 MVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCP 239
M+ A F+ D+ R+ + PEDRPLI QFC N+ + L AA L CD IDIN+GCP
Sbjct: 1 MLHAGNFLTDELYRKTHFTTCPEDRPLIAQFCANEPETLFNAASLVANQCDAIDINLGCP 60
Query: 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC 299
Q +A+RG YGAYLQDDW L+++L+ S + + +PV+CKIRI+ +V +TVEYA+M++ +GC
Sbjct: 61 QTIARRGKYGAYLQDDWDLVSSLIKSACR-LPIPVTCKIRIFPEVRRTVEYAQMIQASGC 119
>gi|283795849|ref|ZP_06345002.1| tRNA-dihydrouridine synthase [Clostridium sp. M62/1]
gi|291076480|gb|EFE13844.1| TIM-barrel protein, nifR3 family [Clostridium sp. M62/1]
gi|295091061|emb|CBK77168.1| tRNA-U20-dihydrouridine synthase [Clostridium cf. saccharolyticum
K10]
Length = 319
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 126/224 (56%), Gaps = 5/224 (2%)
Query: 153 LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCG 212
LAPM ++LP+R+L R G L T MVSA + + + +L + PE+RP+ +Q G
Sbjct: 16 LAPMAGVTDLPFRILCREQGCGLMCTEMVSAKALLYKNRNTKPLLETKPEERPVAVQLFG 75
Query: 213 NDSKNLTEAA-KLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
+D + ++E A L E D ID+N+GCP G+ L + L ++S++ + ++
Sbjct: 76 SDPEIMSEMALMLEEGPYDIIDVNMGCPVPKIVNNGEGSALMKNPKLAGEILSAMTRKLK 135
Query: 272 VPVSCKIR--IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK 329
PV+ K R + VE+A+M E++G +AVHGRT +Q +G A W+ I V++
Sbjct: 136 KPVTVKFRKGFNDESVNAVEFAKMAEQSGAAAVAVHGRTREQ--FYSGKADWDIIRQVKE 193
Query: 330 ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
A++IPVI NG+I D + +TG GVM A G NP +F+
Sbjct: 194 AVSIPVIGNGDIFTPQDAGRMMEETGCDGVMVARGAKGNPWIFS 237
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 37/243 (15%)
Query: 74 TQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPED 133
+L SP LAPM ++LP+R+L R G L T MVSA + + + +L + PE+
Sbjct: 8 VELDSP-VALAPMAGVTDLPFRILCREQGCGLMCTEMVSAKALLYKNRNTKPLLETKPEE 66
Query: 134 RPLIIQRTIFPRLGSPRFILAPM-VDASELPWRLLSRRYGSHLCYTPMV----SAHQFIA 188
RP+ +Q GS I++ M + E P+ ++ G C P + +
Sbjct: 67 RPVAVQ-----LFGSDPEIMSEMALMLEEGPYDIIDVNMG---CPVPKIVNNGEGSALMK 118
Query: 189 DKKLRQEIL--MSTPEDRPLIIQF---CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVA 243
+ KL EIL M+ +P+ ++F ++S N E AK+AE +
Sbjct: 119 NPKLAGEILSAMTRKLKKPVTVKFRKGFNDESVNAVEFAKMAEQSGAAA---VAVHGRTR 175
Query: 244 KRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY--QDVNKTVEYARMLERAGCQL 301
++ + G + DW +++ +++AV +PV I+ QD RM+E GC
Sbjct: 176 EQFYSG---KADW----DIIRQVKEAVSIPVIGNGDIFTPQDA------GRMMEETGCDG 222
Query: 302 LAV 304
+ V
Sbjct: 223 VMV 225
>gi|103486763|ref|YP_616324.1| dihydrouridine synthase TIM-barrel protein nifR3 [Sphingopyxis
alaskensis RB2256]
gi|98976840|gb|ABF52991.1| Dihydrouridine synthase TIM-barrel protein nifR3 [Sphingopyxis
alaskensis RB2256]
Length = 332
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 151/318 (47%), Gaps = 29/318 (9%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PEDRPLII 208
ILAPM ++LP+R L R YGS L T M+++ I ++ RQ I + P + P+ +
Sbjct: 18 VILAPMTGVTDLPFRKLVRYYGSGLNVTEMIASQAAI--RETRQSIQKAAWDPVEEPVSM 75
Query: 209 QFCGNDSKNLTEAAKLAEPHCDG-IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
Q G + EAAKL E IDIN+GCP G G+ L D L L+ +
Sbjct: 76 QLVGCTPYEMGEAAKLNEDRGAAIIDINMGCPVRKVTNGDAGSALMRDLRLAAALIDACV 135
Query: 268 QAVQVPVSCKIRIY--QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+AV VPV+ K+R+ D E A + E G +L+ VHGRT +Q M G A W +
Sbjct: 136 KAVSVPVTVKMRMGWCHDSLNAPELAHIAEDLGAKLVTVHGRTRNQ--MYRGEADWGFVR 193
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
V++A++IPVI NG+I D LAQ+G GVM G P L GQ A E
Sbjct: 194 KVKEAVSIPVIVNGDICSADDARTALAQSGADGVMIGRGAYGRPWLL-GQVMAALRGEGE 252
Query: 386 YLD--LVAQYPVRLQYARGHV--------FNMCH-----HLLTLPENSDVRLLVGKTNHI 430
D L QY V + R + NM ++ LP +++ R K N I
Sbjct: 253 RPDPGLDEQYDVITSHYRAMIDHYGETTGVNMARKHLGWYVKGLPGSAEFR---NKVNRI 309
Query: 431 KDLRKAVDMLRERFIDYH 448
D + +D L E F H
Sbjct: 310 PDSKGVLDAL-EAFYGPH 326
>gi|296231397|ref|XP_002761126.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
1 [Callithrix jacchus]
gi|296231399|ref|XP_002761127.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
2 [Callithrix jacchus]
Length = 493
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 145/294 (49%), Gaps = 25/294 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS----TPEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + I K++ E+L + P+DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRV 72
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q +D++ A+L E GID+N+GCP+ + +G GA L
Sbjct: 73 VFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLS 132
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + ++S+L + PV+CKIRI + T+ + +ER G +AVHGR ++R
Sbjct: 133 DPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQ 192
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ S E I A+ L+IPVIANG IQ +D+E T + VM A ++NP+
Sbjct: 193 HP--VSCEVIKAIADTLSIPVIANGGSHDHIQRYSDIEDFRQATAASSVMVARAAMWNPS 250
Query: 371 LFTGQT-RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+F + RP E+ +Y+ QY + + +C L E+ RLL
Sbjct: 251 IFLKEGLRPLEEVMQKYIRYAVQYD---NHYTNTKYCLCQMLREQLESPQGRLL 301
>gi|168053249|ref|XP_001779050.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669612|gb|EDQ56196.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 336
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/306 (29%), Positives = 150/306 (49%), Gaps = 36/306 (11%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI------------AD--KKLRQE 195
+ +LAPMV LP+R+L+ YG+ + Y + H+ + D +K E
Sbjct: 10 KHVLAPMVRVGGLPFRMLAAEYGADITYGEEIVDHKMVRCARVVNEDLGTVDFVEKSSNE 69
Query: 196 ILMST--PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 253
++ T E ++ Q +++ +AA L D+N+GCP+ + G G+ L
Sbjct: 70 VVFRTCDEEKHRVVFQVGTSEAVRCLKAANLVAGDIAAFDVNMGCPKSFSTSGGMGSALL 129
Query: 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313
++ +++++L++ + +PV+CKIR+ + +TVE AR +E+ G LAVHGR V R
Sbjct: 130 SKPDVIHDILTTLKRNLNIPVTCKIRLLKTYGETVELARRIEKTGVSALAVHGRRVPDRP 189
Query: 314 MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ A W+ I V AL+IPVIANG++ +D + TG A VM A G ++N ++F
Sbjct: 190 RDP--AQWDGIQEVVSALSIPVIANGDVFEYSDFQRIKDATGAASVMVARGAMWNVSVFR 247
Query: 374 GQTRPAWE-LASEY-----------------LDLVAQYPVRLQYARGHVFNMCHHLLTLP 415
+ + WE + EY L + QY L++A G C L +
Sbjct: 248 PEGKHFWEDVKREYVRKCIEWDNDVRWTKHTLKEMIQYHSCLEFAEGKAMYRCKTLADVA 307
Query: 416 ENSDVR 421
+ D+R
Sbjct: 308 DMYDMR 313
>gi|393796790|ref|ZP_10380154.1| nifR3 family TIM-barrel protein [Candidatus Nitrosoarchaeum limnia
BG20]
Length = 321
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 148/321 (46%), Gaps = 42/321 (13%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIA-------DKKLRQEILMST 200
S R LAPM S+ RL ++ G+ L T S H IA +KK QE L +
Sbjct: 6 SSRAFLAPMAGVSDPALRLQCKKMGAGLVVTEFTSIHSIIAKEHQLKENKKTIQEFLEYS 65
Query: 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
++RPL +Q G+D L +AAK+ EP D ID N+GCP + G L + L
Sbjct: 66 EKERPLSVQLFGSDLLALEKAAKIVEPFFDIIDYNMGCPAPHITQQMAGGALLQEINLTQ 125
Query: 261 NLVSSLRQAVQVPVSCKIR---------IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQ 311
+ S+L AV+ PV+ KIR +++D+ A + E G Q++ +H RTV Q
Sbjct: 126 QIFSTLVNAVKKPVTLKIRSGVTDASRYLFKDI------ATIAEDEGIQMITLHPRTVSQ 179
Query: 312 RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371
+G A W+ I +++ IP++ NG+I D + + QTG VM G + NP L
Sbjct: 180 G--YSGNADWKMIKELKEISNIPIVGNGDITTPEDAKNMIDQTGCDYVMIGRGAMGNPFL 237
Query: 372 F--------TGQTRPAWELAS------EYLDLVAQYPVRLQYARGHVFNMCHHLLTLPEN 417
F TG T + L EYL L QY ++ +G +
Sbjct: 238 FEQINDYLKTG-TYKQYSLKDKIDSFFEYLSLSTQYKIKFSNIKGQAMRFTKG---IKGG 293
Query: 418 SDVRLLVGKTNHIKDLRKAVD 438
S +R + + +I +L K +D
Sbjct: 294 SKIRPKISTSKNITELTKIMD 314
>gi|239626632|ref|ZP_04669663.1| TIM-barrel protein [Clostridiales bacterium 1_7_47_FAA]
gi|239516778|gb|EEQ56644.1| TIM-barrel protein [Clostridiales bacterium 1_7_47FAA]
Length = 328
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 127/226 (56%), Gaps = 9/226 (3%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM ++LP+RLL R G+ T MVSA + + + +E++ P++RP IQ
Sbjct: 15 ILAPMAGVTDLPFRLLCREQGAGCVVTEMVSAKAILYNNRNTKELMQIHPQERPAAIQLF 74
Query: 212 GNDSKNLTE-AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G+D + + AA++ + D ID+N+GCP G+ L + L ++S++ +AV
Sbjct: 75 GSDPDIMAQIAARIEDGPYDFIDVNMGCPVPKIVNNGEGSALMKNPELAEKILSAMVKAV 134
Query: 271 QVPVSCKIRIYQDVNKT----VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
+ PV+ K R + N T VE+A+M E +G +AVHGRT +Q +G A W+ I
Sbjct: 135 KKPVTVKFR--KGFNDTCVNAVEFAKMAEASGVAAVAVHGRTREQ--YYSGKADWDIIRQ 190
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
V++A+ IPVI NG+I D + +TG G+M A G NP +F
Sbjct: 191 VKEAVKIPVIGNGDIFTPQDAGRMMEETGCDGIMVARGAKGNPWIF 236
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 108/240 (45%), Gaps = 46/240 (19%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
ILAPM ++LP+RLL R G+ T MVSA + + + +E++ P++RP IQ
Sbjct: 15 ILAPMAGVTDLPFRLLCREQGAGCVVTEMVSAKAILYNNRNTKELMQIHPQERPAAIQ-- 72
Query: 142 IFPRLGSPRFILAPMVDASE-LPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQEI 196
GS I+A + E P+ + G C P + + + +L ++I
Sbjct: 73 ---LFGSDPDIMAQIAARIEDGPYDFIDVNMG---CPVPKIVNNGEGSALMKNPELAEKI 126
Query: 197 L--MSTPEDRPLIIQF--CGNDS-KNLTEAAKLAEPHCDGIDINIGCPQMVAKRG----- 246
L M +P+ ++F ND+ N E AK+AE G+ VA G
Sbjct: 127 LSAMVKAVKKPVTVKFRKGFNDTCVNAVEFAKMAE--ASGV-------AAVAVHGRTREQ 177
Query: 247 HYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY--QDVNKTVEYARMLERAGCQLLAV 304
+Y + DW +++ +++AV++PV I+ QD RM+E GC + V
Sbjct: 178 YYSG--KADW----DIIRQVKEAVKIPVIGNGDIFTPQDA------GRMMEETGCDGIMV 225
>gi|304405776|ref|ZP_07387434.1| TIM-barrel protein, nifR3 family [Paenibacillus curdlanolyticus
YK9]
gi|304345019|gb|EFM10855.1| TIM-barrel protein, nifR3 family [Paenibacillus curdlanolyticus
YK9]
Length = 342
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 124/223 (55%), Gaps = 6/223 (2%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
+LAPM +RL+++ +G+ L MVS + K E+L ++PL +Q
Sbjct: 13 VVLAPMAGVCNPAFRLIAKEFGTGLVCAEMVSDKAILHGNKRTLEMLYVDEREKPLSLQI 72
Query: 211 CGNDSKNLTEAAKLAEP--HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G D ++L EAAK+ + + D IDIN+GCP + GA D + +VS++ +
Sbjct: 73 FGGDRESLVEAAKIVDKQTNADIIDINMGCPVPKVTKCDAGARWLLDPNKIYEMVSAVTE 132
Query: 269 AVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV PV+ K+RI D VE AR +ERAG ++VHGRT +Q + TG A+W+ I
Sbjct: 133 AVDKPVTVKMRIGWDDEHIFAVENARAVERAGGSAVSVHGRTREQ--LYTGKANWDIIKE 190
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
V++A++IPVI NG++ D + L TGV GVM G L NP
Sbjct: 191 VKEAVSIPVIGNGDVFTPEDAKRMLDHTGVDGVMIGRGALGNP 233
>gi|115495449|ref|NP_001068887.1| tRNA-dihydrouridine synthase 2-like [Bos taurus]
gi|111308646|gb|AAI20343.1| Dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae) [Bos
taurus]
gi|296477934|tpg|DAA20049.1| TPA: dihydrouridine synthase 2-like, SMM1 homolog [Bos taurus]
gi|440905420|gb|ELR55797.1| tRNA-dihydrouridine synthase 2-like protein [Bos grunniens mutus]
Length = 493
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 145/294 (49%), Gaps = 25/294 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST----PEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + + K++ E L + P+DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELVDLKMLQCKRVVNEALSTVDFVAPDDRV 72
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q +D++ A+L E GID+N+GCP+ + +G GA L
Sbjct: 73 VFRTCEREQSKVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLS 132
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + ++S+L + + PV+CKIRI + T+ + +ER G +AVHGR ++R
Sbjct: 133 DPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQ 192
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ S E I A+ + L+IPVIANG IQ D+E T + VM A ++NP+
Sbjct: 193 HP--VSCEAIKAIAETLSIPVIANGGSHDHIQGYLDIEDFRRATAASSVMVARAAMWNPS 250
Query: 371 LFTGQT-RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+F + RP E+ +Y+ QY + + +C L E+ RLL
Sbjct: 251 IFLKEGPRPLEEVMQKYIRYAVQYD---NHYTNTKYCLCQMLREQLESPQGRLL 301
>gi|241204538|ref|YP_002975634.1| nifR3 family TIM-barrel protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240858428|gb|ACS56095.1| TIM-barrel protein, nifR3 family [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 338
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 161/311 (51%), Gaps = 24/311 (7%)
Query: 131 PEDRPLIIQRTIFPRLGSP-----RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQ 185
P+D LI + P P R +LAPM +++P+R L+ R+G+ L T MV++ +
Sbjct: 3 PKDNHLISKDLAAPFQIGPVSVRNRVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRE 62
Query: 186 FIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAK 244
+ D L S RP ++Q G ++ + EAAK+A H D IDIN+GCP
Sbjct: 63 LVNDTAESWSRL-SAAGFRPHMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVI 121
Query: 245 RGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLL 302
G+ G+ L D L+ + +AV +PV+ K+R+ D N + AR E AG QL+
Sbjct: 122 GGYSGSALMRDPDHALGLIEATVKAVDIPVTLKMRLGWDENSINAPDIARRAEAAGIQLV 181
Query: 303 AVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362
+HGRT Q G A W+ I AVR+ ++IP+IANG+++ +D + L ++G VM
Sbjct: 182 TIHGRTRMQ--FYEGRADWDAIRAVREVISIPLIANGDVETASDAQEILRRSGADAVMIG 239
Query: 363 ---EGNLYNPALFTG----QTRPAWELASEYLDLVAQY---PVRLQYARGHVFNMCHHL- 411
+G ++ + +G Q+ ++A E+ ++ + V +++AR H+
Sbjct: 240 RGCQGRPWHAGVISGAPAPQSLKIADIAVEHYRMMLDFYGEAVAIRHARKHLGWYLQRFA 299
Query: 412 --LTLPENSDV 420
L+ PE +++
Sbjct: 300 PDLSGPEKAEI 310
>gi|193211956|ref|YP_001997909.1| TIM-barrel protein, nifR3 family [Chlorobaculum parvum NCIB 8327]
gi|193085433|gb|ACF10709.1| TIM-barrel protein, nifR3 family [Chlorobaculum parvum NCIB 8327]
Length = 347
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 109/301 (36%), Positives = 157/301 (52%), Gaps = 39/301 (12%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQF--IADKKLRQEILMSTPEDRPLII 208
ILAPM D ++ +R L +R+G+ + YT VSA A+K +R+ L +RP+ +
Sbjct: 12 IILAPMEDVTDRAFRQLCKRHGADIVYTEFVSAEAIRRGAEKSIRK--LRMDAHERPVAV 69
Query: 209 QFCGNDSKNLTEAAKLAE---PHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVS 264
Q GN +++ EAA +AE P C +DIN GCP + VA RG GA L + L+ + +
Sbjct: 70 QIFGNTVESMVEAASIAESFEPDC--LDINFGCPVKKVAGRG-AGAALLKEPEKLSAIAA 126
Query: 265 SLRQAVQVPVSCKIRIYQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
++ AV +PV+ K RI D +N T + R LE AG Q +AVHGRT + M G A W
Sbjct: 127 AVVGAVSLPVTAKTRIGWDHDSINIT-DTVRRLEDAGIQAVAVHGRT--RSDMYKGRADW 183
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------T 373
I ++A +IPVIANG++ D A A+TG G+M G++ NP +F T
Sbjct: 184 GRIAEAKRACSIPVIANGDVWSADDAVAMFAETGADGIMIGRGSIGNPFIFAQAKSLVKT 243
Query: 374 GQT------RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLT----LPENSDVRLL 423
G+ R + A E+L L +Y + + V M H T LP S VR L
Sbjct: 244 GERLPLPSYRDRIDAAREHLRLSLEY----KGEKHGVLEMRRHYSTYLKGLPGVSKVRNL 299
Query: 424 V 424
+
Sbjct: 300 L 300
>gi|261403946|ref|YP_003240187.1| TIM-barrel protein, nifR3 family [Paenibacillus sp. Y412MC10]
gi|261280409|gb|ACX62380.1| TIM-barrel protein, nifR3 family [Paenibacillus sp. Y412MC10]
Length = 343
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 122/224 (54%), Gaps = 6/224 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ +LAPM +RL+++ +G+ L MVS + K QE+L ++PL +Q
Sbjct: 14 QVVLAPMAGVCNPAFRLIAKEFGTGLVCAEMVSGKAIVHGNKRTQEMLFVDEREKPLSLQ 73
Query: 210 FCGNDSKNLTEAAKLAE--PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G D +L EAAK+ + + D IDIN+GCP + GA D + +V+++
Sbjct: 74 IFGGDRVSLVEAAKVVDQQTNADIIDINMGCPAPKVTKMDAGARWLLDSNKIYEMVAAVV 133
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV PV+ K+R D + VE A+ +ERAG Q ++VHGRT DQ + TG A W+ I
Sbjct: 134 DAVNKPVTVKMRTGWDSDHIYAVENAQAVERAGGQAVSVHGRTRDQ--LYTGHADWDIIR 191
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
V++A++IPVI NG++ D L TG GVM G L NP
Sbjct: 192 QVKEAVSIPVIGNGDVVTPEDARRMLDTTGCDGVMIGRGALGNP 235
>gi|410099087|ref|ZP_11294060.1| hypothetical protein HMPREF1076_03238 [Parabacteroides goldsteinii
CL02T12C30]
gi|409219568|gb|EKN12529.1| hypothetical protein HMPREF1076_03238 [Parabacteroides goldsteinii
CL02T12C30]
Length = 328
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 159/323 (49%), Gaps = 29/323 (8%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D +++ +RL+ +R+G+ + YT VS+ I QE L ++RP
Sbjct: 8 LGERPVFLAPMEDVTDISFRLMCKRFGADMVYTEFVSSDALIRSVNKTQEKLTVAEDERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G + + EAAK+ E D +DIN GCP + VA +G GA + + PL+ +
Sbjct: 68 VAIQIYGKEVDAMVEAAKICEAARPDILDINFGCPVKKVAGKGA-GAGMLRNIPLMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV +PV+ K R+ D + V+ A L+ G L++HGRT Q M TG A W
Sbjct: 127 KEVVKAVNIPVTVKTRLGWDADNKIIVDLAEQLQDCGIAALSIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I V+ + IP+I NG++ + GV GVM G++ P +F
Sbjct: 185 TLIGEVKNNPRIHIPIIGNGDVTSAEICKQRFDNYGVDGVMIGRGSIGRPWIFREVKHFL 244
Query: 373 -TGQTRPAWELASEYLDL----VAQYPVRLQYARGHVFNMCHHLLTLP------ENSDVR 421
TG+T P E + YLD+ V Q RL RG + ++ HL P + R
Sbjct: 245 TTGETLPE-EKFTWYLDILKQQVNQSVERLDERRG-ILHIRRHLAATPLFKGISDFKQTR 302
Query: 422 LLVGKTNHIKDLRKAVDMLRERF 444
+ + + + +L +D + E+F
Sbjct: 303 VAMLRAETVSELFDIMDSIPEKF 325
Score = 49.7 bits (117), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LG LAPM D +++ +RL+ +R+G+ + YT VS+ I QE L ++RP
Sbjct: 8 LGERPVFLAPMEDVTDISFRLMCKRFGADMVYTEFVSSDALIRSVNKTQEKLTVAEDERP 67
Query: 136 LIIQ 139
+ IQ
Sbjct: 68 VAIQ 71
>gi|393724848|ref|ZP_10344775.1| nifR3 family TIM-barrel protein [Sphingomonas sp. PAMC 26605]
Length = 333
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/316 (32%), Positives = 149/316 (47%), Gaps = 23/316 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
+ SP ILAPM S++P+R L RRYGS L T MV++ I + + + P + P
Sbjct: 15 IASP-VILAPMTGVSDMPFRTLVRRYGSGLNVTEMVASQAAIRETRQSLQKAAWAPIENP 73
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDG-IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
+ +Q G + EAAKL+E IDIN+GCP G G+ L D ++
Sbjct: 74 VSMQLVGCTPYEMGEAAKLSEDRGAAIIDINMGCPVRKVTNGDAGSALMRDLDTAGAIIK 133
Query: 265 SLRQAVQVPVSCKIRIYQD--VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
+ AV VPV+ K+R+ D + A++ + G +L+ VHGRT +Q M G A W
Sbjct: 134 GVVDAVSVPVTLKMRMGWDHACLNAPQLAQIAQDLGVKLVTVHGRTRNQ--MYKGNADWA 191
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TG 374
I +V+ A++IPVIANG+I + D E L Q+G G+M G P L TG
Sbjct: 192 FIRSVKDAVSIPVIANGDITSIEDAETALDQSGADGIMIGRGAYGRPWLLGQVMEWFATG 251
Query: 375 QTRPAWELASEYLDLVAQYPVRLQ-YARGHVFNMCH-----HLLTLPENSDVRLLVGKTN 428
+ P + +Y + Y L Y NM + L +++ R K N
Sbjct: 252 RRVPDPSIEEQYGVIAEHYEAMLSHYGNETGVNMARKHIGWYTRGLHGSAEFR---NKVN 308
Query: 429 HIKDLRKAVDMLRERF 444
I D + ML E +
Sbjct: 309 QIPDPKVVQAMLAEFY 324
Score = 43.5 bits (101), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
+ SP ILAPM S++P+R L RRYGS L T MV++ I + + + P + P
Sbjct: 15 IASP-VILAPMTGVSDMPFRTLVRRYGSGLNVTEMVASQAAIRETRQSLQKAAWAPIENP 73
Query: 136 LIIQ 139
+ +Q
Sbjct: 74 VSMQ 77
>gi|424881450|ref|ZP_18305082.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. trifolii WU95]
gi|392517813|gb|EIW42545.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. trifolii WU95]
Length = 338
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 152/292 (52%), Gaps = 21/292 (7%)
Query: 131 PEDRPLIIQRTIFPRLGSP-----RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQ 185
P+D LI + P P R +LAPM +++P+R L+ R+G+ L T MV++ +
Sbjct: 3 PKDNHLISKDLAAPFRTGPVSVRNRVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRE 62
Query: 186 FIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAK 244
+ D L S RP ++Q G ++ + EAAK+A H D IDIN+GCP
Sbjct: 63 LVNDTAESWSRL-SAAGFRPHMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVI 121
Query: 245 RGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLL 302
G+ G+ L D L+ + +AV +PV+ K+R+ D N + AR E AG QL+
Sbjct: 122 GGYSGSALMRDPEHALGLIEATVKAVDIPVTLKMRLGWDENSINAPDIARRAEAAGIQLV 181
Query: 303 AVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362
+HGRT Q G A W+ I AVR+ ++IP+IANG+++ D + L ++G VM
Sbjct: 182 TIHGRTRMQ--FYEGRADWDAIRAVREVISIPLIANGDVETAGDAQEILRRSGADAVMIG 239
Query: 363 ---EGNLYNPALFTGQTRP----AWELASEYLDLVAQY---PVRLQYARGHV 404
+G ++ + +G P ++A E+ ++ + V +++AR H+
Sbjct: 240 RGCQGRPWHAGVISGAPAPLPPDIADIAVEHYRMMLDFYGEAVAIRHARKHL 291
>gi|336436164|ref|ZP_08615877.1| hypothetical protein HMPREF0988_01462 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336008204|gb|EGN38223.1| hypothetical protein HMPREF0988_01462 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 319
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 128/227 (56%), Gaps = 7/227 (3%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
++L PM ++LP+RLL + G L MVSA + + K + +L P++ P+ +Q
Sbjct: 15 YVLGPMAGVTDLPFRLLCKEQGVGLICMEMVSAKGILYNNKNTESLLQIHPDETPVSLQL 74
Query: 211 CGNDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G+D K ++E AK + E +DIN+GCP + G+ L + L+ LVS++ +A
Sbjct: 75 FGSDPKIVSEMAKRIEERPFTFLDINMGCPVPKVVKNKEGSALMKNPRLVYELVSAVVKA 134
Query: 270 VQVPVSCKIRIYQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
++ PV+ KIR D VN VE A+++E AG +AVHGRT +Q +G A WE I
Sbjct: 135 IEKPVTVKIRKGFDDEHVN-AVEIAKIIEEAGASAVAVHGRTREQ--YYSGKADWEIIRQ 191
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
V++A+ IPVI NG++ EA QTG G+M A NP +F+
Sbjct: 192 VKEAVHIPVIGNGDVTSGEQAEAMRKQTGCDGIMIARAAEGNPWIFS 238
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 101/239 (42%), Gaps = 42/239 (17%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
++L PM ++LP+RLL + G L MVSA + + K + +L P++ P+ +Q
Sbjct: 15 YVLGPMAGVTDLPFRLLCKEQGVGLICMEMVSAKGILYNNKNTESLLQIHPDETPVSLQ- 73
Query: 141 TIFPRLGSPRFILAPMVD-ASELPWRLLSRRYGSHLCYTPMVSAHQ----FIADKKLRQE 195
GS I++ M E P+ L G C P V ++ + + +L E
Sbjct: 74 ----LFGSDPKIVSEMAKRIEERPFTFLDINMG---CPVPKVVKNKEGSALMKNPRLVYE 126
Query: 196 ILMSTPE--DRPLIIQF-CGNDSK--NLTEAAKLAEPHCDGIDINIGCPQMVAKRG---- 246
++ + + ++P+ ++ G D + N E AK+ E VA G
Sbjct: 127 LVSAVVKAIEKPVTVKIRKGFDDEHVNAVEIAKIIEE---------AGASAVAVHGRTRE 177
Query: 247 -HYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
+Y + DW ++ +++AV +PV DV + M ++ GC + +
Sbjct: 178 QYYSG--KADW----EIIRQVKEAVHIPVIGN----GDVTSGEQAEAMRKQTGCDGIMI 226
>gi|6561964|emb|CAB62468.1| putative protein [Arabidopsis thaliana]
Length = 519
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/303 (29%), Positives = 154/303 (50%), Gaps = 25/303 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIA-DKKLR-------------QE 195
+ +LAPMV L +R+L+ YG+ + Y + H+ + +++L
Sbjct: 222 KLVLAPMVRVGTLSFRMLAAEYGADITYGEEIIDHKLVKCERRLNVASGTSEFVEKGTDN 281
Query: 196 ILMST--PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 253
++ ST E ++ Q +D+ +A+++ IDIN+GCP+ + +G GA L
Sbjct: 282 VVFSTCDEEKSRVVFQMGTSDAVRALKASEIVCNDVATIDINMGCPKAFSIQGGMGAALL 341
Query: 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313
L+ +++++L++ + VPV+CKIR+ + TVE AR +E+ G LAVHGR + R
Sbjct: 342 SKPELIHDILATLKRNLDVPVTCKIRLLKSPADTVELARRIEKLGVPALAVHGRKIADRP 401
Query: 314 MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ A W+ I V AL+IPVIANG++ D TG A VM A G ++N ++F+
Sbjct: 402 RDP--AKWDEIADVVAALSIPVIANGDVLEYDDFSRIKTATGAASVMVARGAMWNASIFS 459
Query: 374 GQTRPAWE-LASEYLDLVAQYPVRLQYARGHVFNMC--HHLLTLPENSDVRLLVGKTNHI 430
+ + WE + +YL + ++ + + M H L LPE + K + +
Sbjct: 460 PKGKSHWEDVKKKYLRKSILWNNDVKSTKYTIKEMIAHHSCLELPEGKS----INKADTL 515
Query: 431 KDL 433
+DL
Sbjct: 516 EDL 518
>gi|302818315|ref|XP_002990831.1| hypothetical protein SELMODRAFT_132390 [Selaginella moellendorffii]
gi|300141392|gb|EFJ08104.1| hypothetical protein SELMODRAFT_132390 [Selaginella moellendorffii]
Length = 299
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 129/248 (52%), Gaps = 18/248 (7%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--------- 200
+ ILAPMV LP+R+L+ YG+ L Y + H+ + ++ ++L S
Sbjct: 10 KLILAPMVRVGTLPFRMLAAGYGADLTYGEEIVDHKMLKCSRVVNDVLGSIDFVENGTND 69
Query: 201 -------PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 253
E ++ Q +D A+L +DIN+GCP+ + G G+ L
Sbjct: 70 VVFRTCKAERDHVVFQMGTSDPYRALTVAQLLCRDIAAVDINMGCPKPFSVTGGMGSALL 129
Query: 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313
L++ ++++LR+ + +PV+CKIR+ + +TVE AR +E+ G +AVHGR + R
Sbjct: 130 SQPELVSEILTTLRRNLDIPVTCKIRLLKSTQETVELARRIEKTGVSAIAVHGRRIPDRP 189
Query: 314 MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ A W+ I V AL+IPVIANG++ D+ A TG + VM A G L+N ++F
Sbjct: 190 KDR--AKWDGIADVVSALSIPVIANGDVFEPPDIPRIKAATGASSVMVARGALWNASIFR 247
Query: 374 GQTRPAWE 381
+ + WE
Sbjct: 248 PEGKLDWE 255
>gi|357055111|ref|ZP_09116187.1| hypothetical protein HMPREF9467_03159 [Clostridium clostridioforme
2_1_49FAA]
gi|355383484|gb|EHG30567.1| hypothetical protein HMPREF9467_03159 [Clostridium clostridioforme
2_1_49FAA]
Length = 321
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/313 (31%), Positives = 157/313 (50%), Gaps = 28/313 (8%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM ++LP+R+L R G+ T MVSA + + + +E+L P++RP +Q
Sbjct: 15 ILAPMAGVTDLPFRVLCREQGAGCVVTEMVSAKAVLYNNRNTRELLQIDPDERPAAVQLF 74
Query: 212 GNDSKNLTE-AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G++ + E AA+L E D ID+N+GCP G+ L + +++++ +AV
Sbjct: 75 GSEPDIMAEIAARLEEGPYDYIDVNMGCPVPKIVNNGEGSALMKNPGRAREVLAAMVKAV 134
Query: 271 QVPVSCKIRI-YQDVN-KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+ PV+ K R + D++ VE+A+M E G +AVHGRT +Q +G A W+ I V+
Sbjct: 135 KKPVTVKFRKGFNDLSVNAVEFAKMAESCGVAAVAVHGRTREQ--YYSGKADWDIIRQVK 192
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRPAW 380
+A+ IPVI NG+I D L +TG G+M A G NP LF TG+ P
Sbjct: 193 EAVRIPVIGNGDIFTPEDAGRMLKETGCDGIMVARGAKGNPWLFGRINHYLDTGEVFPGP 252
Query: 381 ELA---------SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIK 431
+A L V ++ RGH M + +P ++ +R + N ++
Sbjct: 253 SMAEIKAMILRHGRMLVRFKGEGVAMREMRGH---MAWYTKGMPHSATLR---NEINQVE 306
Query: 432 DLRKAVDMLRERF 444
L V++L +
Sbjct: 307 TLEGFVELLDRKI 319
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 104/233 (44%), Gaps = 32/233 (13%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
ILAPM ++LP+R+L R G+ T MVSA + + + +E+L P++RP +Q
Sbjct: 15 ILAPMAGVTDLPFRVLCREQGAGCVVTEMVSAKAVLYNNRNTRELLQIDPDERPAAVQ-- 72
Query: 142 IFPRLGSPRFILAPMVDA-SELPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQEI 196
GS I+A + E P+ + G C P + + + +E+
Sbjct: 73 ---LFGSEPDIMAEIAARLEEGPYDYIDVNMG---CPVPKIVNNGEGSALMKNPGRAREV 126
Query: 197 L--MSTPEDRPLIIQF--CGND-SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAY 251
L M +P+ ++F ND S N E AK+AE C + + + +Y
Sbjct: 127 LAAMVKAVKKPVTVKFRKGFNDLSVNAVEFAKMAE-SCGVAAVAV---HGRTREQYYSG- 181
Query: 252 LQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
+ DW +++ +++AV++PV D+ + RML+ GC + V
Sbjct: 182 -KADW----DIIRQVKEAVRIPVIGN----GDIFTPEDAGRMLKETGCDGIMV 225
>gi|145219156|ref|YP_001129865.1| nifR3 family TIM-barrel protein [Chlorobium phaeovibrioides DSM
265]
gi|145205320|gb|ABP36363.1| tRNA-U20-dihydrouridine synthase [Chlorobium phaeovibrioides DSM
265]
Length = 354
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 147/292 (50%), Gaps = 29/292 (9%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM D ++ +R L +R+G+ + YT VSA + L++ P +RP+ +Q
Sbjct: 13 ILAPMEDVTDRAFRQLCKRHGADIVYTEFVSAEALRRGVEKTTRKLIADPVERPIAVQIF 72
Query: 212 GNDSKNLTEAAKLAEP-HCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G+ +++TEAA++AE D +DIN GCP + VA +G GA L + + + ++ +A
Sbjct: 73 GSTVESMTEAARIAESFEPDYLDINFGCPTKKVAGKGA-GAALLREPEKMAAITEAVVRA 131
Query: 270 VQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
V +PV+ K R+ D + ++ R LE AG Q LA+HGRT + M G A W+ I
Sbjct: 132 VNIPVTAKTRLGWDRDSINIIDVLRRLEDAGIQALALHGRTRSE--MYKGRADWDWIAET 189
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG------------- 374
+ +IPVIANG++ D TG G+M G + NP +F+G
Sbjct: 190 VRHASIPVIANGDVWSPEDALQMFNHTGAEGIMIGRGAIGNPFIFSGTRHLLKTGNLPSP 249
Query: 375 -QTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLT----LPENSDVR 421
R E A E+L+L Q+ + R M H T LP+ S VR
Sbjct: 250 PDFRDRIEAALEHLELSVQF----KGERYGTLEMRRHYSTYLKGLPKVSVVR 297
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
ILAPM D ++ +R L +R+G+ + YT VSA + L++ P +RP+ +Q
Sbjct: 13 ILAPMEDVTDRAFRQLCKRHGADIVYTEFVSAEALRRGVEKTTRKLIADPVERPIAVQ 70
>gi|354484304|ref|XP_003504329.1| PREDICTED: tRNA-dihydrouridine synthase 2 [Cricetulus griseus]
Length = 493
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 145/294 (49%), Gaps = 25/294 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST----PEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + + K++ E+L + P+DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPDDRV 72
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q +D++ A+L E GID+N+GCP+ + +G GA L
Sbjct: 73 VFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLS 132
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + ++S+L + + PV+CKIRI + T+ + +ER G +AVHGR ++R
Sbjct: 133 DPDKIEKILSTLVKGIHKPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGRNREERPQ 192
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ S E I A+ + L+IPVIANG IQ D+E T + VM A ++NP+
Sbjct: 193 HP--VSCEVIRAIAETLSIPVIANGGSHDHIQQHLDIEDFRQATAASSVMVARAAMWNPS 250
Query: 371 LFTGQT-RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+F RP E+ +Y+ QY + + +C L E+ RLL
Sbjct: 251 IFLKDGLRPLEEVMQKYIRYAVQYD---NHYTNTKYCLCQMLREQLESPQGRLL 301
>gi|344924695|ref|ZP_08778156.1| tRNA-dihydrouridine synthase B [Candidatus Odyssella
thessalonicensis L13]
Length = 323
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 140/274 (51%), Gaps = 22/274 (8%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
ILAPM +++P+R L +R G+ L + M+++ + + +++ +PE+ P+ +Q
Sbjct: 14 VILAPMSGVTDMPFRRLVKRMGAGLVISEMIASQAMVRQVRQTMKMIEKSPEELPMAVQL 73
Query: 211 CGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G + + EAA+L E IDIN+GCP GH G+ L D L ++ + +A
Sbjct: 74 AGCEPSVMAEAARLNEDLGAQIIDINMGCPVKKVVNGHAGSSLMRDEALAARIIEATVKA 133
Query: 270 VQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
V+VPV+ K+R D N A++ E G +++ +HGRT Q + G A W I V
Sbjct: 134 VKVPVTLKMRTGWDDNTRNAPRLAKIAEECGIKMITIHGRTRCQ--LYNGRADWAFIRQV 191
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG--------NLYNPALFTGQTRPA 379
+ A+ +PVI NG++ + D + L Q+G GVM G N L TG P
Sbjct: 192 KDAVKVPVIGNGDVVSIEDAQTLLQQSGADGVMVGRGCYGRPWFINQIGHFLKTGTYLPD 251
Query: 380 WELASEYL-------DLVAQYPVR--LQYARGHV 404
+LA++ L D+++ Y V ++ AR HV
Sbjct: 252 PDLATQRLIVKTHLDDILSHYGVATGIKIARKHV 285
Score = 41.6 bits (96), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 35/59 (59%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
ILAPM +++P+R L +R G+ L + M+++ + + +++ +PE+ P+ +Q
Sbjct: 14 VILAPMSGVTDMPFRRLVKRMGAGLVISEMIASQAMVRQVRQTMKMIEKSPEELPMAVQ 72
>gi|116252011|ref|YP_767849.1| tRNA-dihydrouridine synthase (nitrogen regulation protein)
[Rhizobium leguminosarum bv. viciae 3841]
gi|115256659|emb|CAK07747.1| putative tRNA-dihydrouridine synthase (nitrogen regulation protein)
[Rhizobium leguminosarum bv. viciae 3841]
Length = 338
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 152/292 (52%), Gaps = 21/292 (7%)
Query: 131 PEDRPLIIQRTIFPRLGSP-----RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQ 185
P+D LI + P P R +LAPM +++P+R L+ R+G+ L T MV++ +
Sbjct: 3 PKDNHLISKDLAAPFQIGPVSVRNRVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRE 62
Query: 186 FIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAK 244
+ D L S RP ++Q G ++ + EAAK+A H D IDIN+GCP
Sbjct: 63 LVNDTAESWSRL-SAAGFRPHMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVI 121
Query: 245 RGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLL 302
G+ G+ L D L+ + +AV +PV+ K+R+ D N + AR E AG QL+
Sbjct: 122 GGYSGSALMRDPDHAIGLIEATVKAVDIPVTLKMRLGWDENSINAPDIARRAEAAGVQLV 181
Query: 303 AVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362
+HGRT Q G A W+ I AVR+ ++IP+IANG+++ D + L ++G VM
Sbjct: 182 TIHGRTRMQ--FYEGRADWDAIRAVREVISIPLIANGDVETAGDAQEILRRSGADAVMIG 239
Query: 363 ---EGNLYNPALFTGQTRP----AWELASEYLDLVAQY---PVRLQYARGHV 404
+G ++ + +G P ++A E+ ++ + V +++AR H+
Sbjct: 240 RGCQGRPWHAGVISGAPEPLPPEIADIAIEHYRMMLDFYGEAVAIRHARKHL 291
>gi|363750684|ref|XP_003645559.1| hypothetical protein Ecym_3249 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889193|gb|AET38742.1| Hypothetical protein Ecym_3249 [Eremothecium cymbalariae
DBVPG#7215]
Length = 352
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/318 (29%), Positives = 152/318 (47%), Gaps = 16/318 (5%)
Query: 135 PLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ 194
PL+I + G P + PMV S+LP+R R + + YTPM+ A +F+ + R
Sbjct: 20 PLLIIKNSRKLHGRPATVAGPMVRYSKLPFRQTCRHFNVDIVYTPMILAREFVRNGHARM 79
Query: 195 EILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
+ +D PLI+Q N+ +L A++ P+CDGI IN GCP R G+ L
Sbjct: 80 ADFTTNNKDFPLIVQVGVNNVVDLLRFAEMVIPYCDGISINCGCPIREQIREGIGSALIY 139
Query: 255 DWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR 312
+ LL N+V +++ + + KIRI+ ++TV + AG + +HGRT R
Sbjct: 140 NPELLYNMVKAIKDKYGDSLRLETKIRIHDHPDQTVALCDRISEAGADWITIHGRTRTTR 199
Query: 313 -GMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371
+ + + ++I K IP++ANG+ + D TGV GVM A G L NPAL
Sbjct: 200 SSVPVNIRAIKYIKEHIKNQQIPIVANGDCFNMKDFWKVAEYTGVDGVMAARGLLANPAL 259
Query: 372 FTGQTRPAW---ELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDV-RLLVGKT 427
F+G W EL Y P ++ + HHL + E+ ++ + L+ +
Sbjct: 260 FSGYVNCPWKAVELFWYYTMEFGGLPFQI---------LLHHLHCMLEDMNIDKGLLKEM 310
Query: 428 NHIKDLRKAVDMLRERFI 445
++ + +D + FI
Sbjct: 311 MLMRSTSELIDWFDKYFI 328
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 12/131 (9%)
Query: 77 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 136
G P + PMV S+LP+R R + + YTPM+ A +F+ + R + +D PL
Sbjct: 32 GRPATVAGPMVRYSKLPFRQTCRHFNVDIVYTPMILAREFVRNGHARMADFTTNNKDFPL 91
Query: 137 IIQRTIFPRLGSPRF--ILAPMVDASEL----PWRLLSRR-YGSHLCYTP-----MVSAH 184
I+Q + + RF ++ P D + P R R GS L Y P MV A
Sbjct: 92 IVQVGVNNVVDLLRFAEMVIPYCDGISINCGCPIREQIREGIGSALIYNPELLYNMVKAI 151
Query: 185 QFIADKKLRQE 195
+ LR E
Sbjct: 152 KDKYGDSLRLE 162
>gi|432093601|gb|ELK25583.1| tRNA-dihydrouridine synthase 2-like protein [Myotis davidii]
Length = 536
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 135/264 (51%), Gaps = 22/264 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS----TPEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + + K++ E+L + P+DR
Sbjct: 56 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPDDRV 115
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q +D++ A+L E GID+N+GCP+ + +G GA L
Sbjct: 116 VFRTCQREKSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLS 175
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + ++S+L + PV+CKIRI + T+ + +ER G +AVHGR ++R
Sbjct: 176 DPDKIEKILSTLVKGTSRPVTCKIRILPSLEDTLNLVKRIERTGIAAIAVHGRKREERPQ 235
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ S E I A+ + L+IPVIANG IQ D+E T + VM A ++NP+
Sbjct: 236 HP--VSCETIKAIAETLSIPVIANGGSHDHIQDYLDIEDFRQATAASSVMVARAAMWNPS 293
Query: 371 LFTGQT-RPAWELASEYLDLVAQY 393
+F + RP E+ +Y+ QY
Sbjct: 294 IFLKEGLRPLEEVMQKYIRYAVQY 317
>gi|85858573|ref|YP_460775.1| tRNA-dihydrouridine synthase [Syntrophus aciditrophicus SB]
gi|85721664|gb|ABC76607.1| tRNA-dihydrouridine synthase [Syntrophus aciditrophicus SB]
Length = 326
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 125/226 (55%), Gaps = 7/226 (3%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM S LP+R+++R G L +T M+SA+ + + Q+ + S +D+PL +Q
Sbjct: 14 ILAPMAGISNLPFRMMAREAGCALAFTEMISANGLVRGIEKSQQYMKSCIDDKPLGVQIF 73
Query: 212 GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
GND + +A ++ + + D ID+N+GCP + GA L D L++ ++ S+R+A
Sbjct: 74 GNDPTTMADAVRIVDDYGADLIDLNMGCPVKKVVKNGAGAALLKDPGLVSQILESVRKAT 133
Query: 271 QVPVSCKIRI---YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
+ P++ KIR Q +N V+ AR+ E+ G + VH RT Q G G A W I +
Sbjct: 134 RKPLTVKIRSGWNLQSIN-AVQIARIAEQQGIDAVFVHARTAVQ-GF-AGSADWRIIEEI 190
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
+ ++ I VI NG+++ AD + TG GVM G L NP +F
Sbjct: 191 KNSVGIKVIGNGDVKSGADAWRMIKMTGCDGVMIGRGALGNPWIFN 236
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 98/233 (42%), Gaps = 42/233 (18%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
ILAPM S LP+R+++R G L +T M+SA+ + + Q+ + S +D+PL +Q
Sbjct: 14 ILAPMAGISNLPFRMMAREAGCALAFTEMISANGLVRGIEKSQQYMKSCIDDKPLGVQ-- 71
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPM----------VSAHQFIADKK 191
IF P M DA + YG+ L M + + D
Sbjct: 72 IFGN--DP----TTMADAVRIV-----DDYGADLIDLNMGCPVKKVVKNGAGAALLKDPG 120
Query: 192 LRQEILMSTPED--RPLIIQFCGN---DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRG 246
L +IL S + +PL ++ S N + A++AE GID + A +G
Sbjct: 121 LVSQILESVRKATRKPLTVKIRSGWNLQSINAVQIARIAEQQ--GIDA-VFVHARTAVQG 177
Query: 247 HYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC 299
G+ DW ++ + +S V K+ DV + RM++ GC
Sbjct: 178 FAGSA---DWRIIEEIKNS--------VGIKVIGNGDVKSGADAWRMIKMTGC 219
>gi|21674741|ref|NP_662806.1| NifR3 family TIM-barrel protein [Chlorobium tepidum TLS]
gi|21647952|gb|AAM73148.1| TIM-barrel protein, nifR3 family [Chlorobium tepidum TLS]
Length = 352
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 143/262 (54%), Gaps = 18/262 (6%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI--ADKKLRQEILMSTPEDRPLII 208
ILAPM D ++ +R L +++G+ + YT +SA +K +R+ + +RP+ +
Sbjct: 17 IILAPMEDVTDRAFRQLCKQHGADIVYTEFISAEALRRGVEKSIRK--ITVADHERPVAV 74
Query: 209 QFCGNDSKNLTEAAKLAEPHC-DGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSL 266
Q GN +++ EAA +AE + D +DIN GCP + VA RG GA L + L+ + S++
Sbjct: 75 QIFGNTVESMVEAAAIAETYEPDYLDINFGCPVKKVAGRGA-GAALLKEPEKLSEIASAV 133
Query: 267 RQAVQVPVSCKIRI---YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
AV +PV+ K RI + +N T + R LE AG + +AVHGRT + M G A W
Sbjct: 134 VNAVSLPVTAKTRIGWDHDSINIT-DTVRRLEDAGIRAVAVHGRT--RSDMYKGRADWGR 190
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I ++A +IPVIANG++ D A +TG G+M G++ NP +F A L
Sbjct: 191 IAEAKQACSIPVIANGDVWLPEDAVAMFERTGADGIMIGRGSIGNPFIF----EQAKSLV 246
Query: 384 SEYLDLVA-QYPVRLQYARGHV 404
E + L A Y R+Q A H+
Sbjct: 247 KEGVRLSAPSYRQRIQAAVDHL 268
>gi|375306240|ref|ZP_09771540.1| tRNA-dihydrouridine synthase 1 [Paenibacillus sp. Aloe-11]
gi|375081751|gb|EHS59959.1| tRNA-dihydrouridine synthase 1 [Paenibacillus sp. Aloe-11]
Length = 342
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 124/224 (55%), Gaps = 6/224 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ +LAPM +RL+++ +G+ L MVS I K +E+L ++PL +Q
Sbjct: 12 QVVLAPMAGVCNPAFRLIAKEFGTGLVCAEMVSDKAIIHGNKRTREMLFVDEREKPLSLQ 71
Query: 210 FCGNDSKNLTEAAKLA--EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G D ++L EAAK+ E + D IDIN+GCP + GA D + +VS++
Sbjct: 72 IFGGDRESLVEAAKVVDQETNADIIDINMGCPVPKVTKCDAGARWLLDPNKIYEMVSAVV 131
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
++V PV+ K+RI D VE AR +ERAG Q ++VHGRT +Q + TG A+W+ I
Sbjct: 132 ESVSKPVTVKMRIGWDSEHIYAVENARAVERAGGQAVSVHGRTREQ--LYTGHANWDIIK 189
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
V++A++IPVI NG++ D L T GVM G L NP
Sbjct: 190 EVKEAVSIPVIGNGDVASPEDARRMLDLTNCDGVMIGRGALGNP 233
>gi|374321426|ref|YP_005074555.1| tRNA-dihydrouridine synthase 1 [Paenibacillus terrae HPL-003]
gi|357200435|gb|AET58332.1| tRNA-dihydrouridine synthase 1 [Paenibacillus terrae HPL-003]
Length = 342
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 124/224 (55%), Gaps = 6/224 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ +LAPM +RL+++ +G+ L MVS I K +E+L ++PL +Q
Sbjct: 12 QVVLAPMAGVCNPAFRLIAKEFGTGLVCAEMVSDKAIIHGNKRTREMLFVDEREKPLSLQ 71
Query: 210 FCGNDSKNLTEAAKLA--EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G D ++L EAAK+ E + D IDIN+GCP + GA D + +VS++
Sbjct: 72 IFGGDRESLVEAAKVVDQETNADIIDINMGCPVPKVTKCDAGARWLLDPNKIYEMVSAVV 131
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
++V PV+ K+RI D VE AR +ERAG Q ++VHGRT +Q + TG A+W+ I
Sbjct: 132 ESVSKPVTVKMRIGWDSEHIYAVENARAVERAGGQAVSVHGRTREQ--LYTGHANWDIIK 189
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
V++A++IPVI NG++ D L T GVM G L NP
Sbjct: 190 EVKEAVSIPVIGNGDVASPEDARRMLDLTNCDGVMIGRGALGNP 233
>gi|426242543|ref|XP_004015132.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
1 [Ovis aries]
Length = 493
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 145/294 (49%), Gaps = 25/294 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST----PEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + + K++ E L + P+DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEALSTVDFVAPDDRV 72
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q +D++ A+L E GID+N+GCP+ + +G GA L
Sbjct: 73 VFRTCEREQSKVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLS 132
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + ++S+L + + PV+CKIRI + T+ + +ER G +AVHGR ++R
Sbjct: 133 DPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQ 192
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ S E I A+ + L+IPVIANG IQ D+E T + VM A ++NP+
Sbjct: 193 HP--VSCEAIKAIAETLSIPVIANGGSHDHIQGYLDIEDFRRATAASSVMVARAAMWNPS 250
Query: 371 LFTGQT-RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+F + RP E+ +Y+ QY + + +C L E+ RLL
Sbjct: 251 IFLREGPRPLEEVMQKYIRYAVQYD---NHYTNTKYCLCQMLREQLESPQGRLL 301
>gi|288958350|ref|YP_003448691.1| tRNA-dihydrouridine synthase B [Azospirillum sp. B510]
gi|288910658|dbj|BAI72147.1| tRNA-dihydrouridine synthase B [Azospirillum sp. B510]
Length = 340
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 123/221 (55%), Gaps = 5/221 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM S+LP+R L +R G L + M+++ I + + ++ + PE+ P+ +Q
Sbjct: 27 ILAPMSGVSDLPFRRLVKRSGCGLVVSEMIASQAMIRENRQTLRMVETEPEEFPMAVQLA 86
Query: 212 GNDSKNLTEAAKLAEPHCDG-IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G + + + EAAKL + +DIN GCP GH G+ L D L ++ ++ +AV
Sbjct: 87 GCEPEVMAEAAKLNQDRGAAVVDINFGCPVKKVVNGHAGSSLMRDEALAGRILEAVVKAV 146
Query: 271 QVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+PV+ K+R+ D + AR+ E+ G +++ VHGRT Q TG A W + AV+
Sbjct: 147 SIPVTLKMRLGWDGTRLNAPSLARIAEQCGIRMVTVHGRTRMQ--FYTGTADWTAVRAVK 204
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
+A++IPV+ NG++ V+ L+++G GVM G+ P
Sbjct: 205 EAVSIPVVVNGDVTSFDAVDRALSESGADGVMIGRGSYGRP 245
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
ILAPM S+LP+R L +R G L + M+++ I + + ++ + PE+ P+ +Q
Sbjct: 27 ILAPMSGVSDLPFRRLVKRSGCGLVVSEMIASQAMIRENRQTLRMVETEPEEFPMAVQ 84
>gi|332184999|ref|ZP_08386748.1| TIM-barrel , nifR3 family protein [Sphingomonas sp. S17]
gi|332014723|gb|EGI56779.1| TIM-barrel , nifR3 family protein [Sphingomonas sp. S17]
Length = 333
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 129/243 (53%), Gaps = 11/243 (4%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PEDRPLII 208
+LAPM +++P+R L RRYGS L T M+++ I + RQ I + P + P+ +
Sbjct: 18 VVLAPMTGVTDMPFRTLVRRYGSGLNVTEMIASQAAI--RATRQSIQKAAWHPLEEPVSM 75
Query: 209 QFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
Q G + EAAKL A+ IDIN+GCP G G+ L D L + ++ +
Sbjct: 76 QLVGCTPYEMGEAAKLNADRGAAIIDINMGCPVRKVVNGDAGSALMRDLKLASEIIRATV 135
Query: 268 QAVQVPVSCKIRIY--QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+AV VPV+ K+R+ D E +R+ E G +++ VHGRT +Q M G A W I
Sbjct: 136 KAVDVPVTLKMRMGWCHDSLNAPELSRIAEDIGVKMITVHGRTRNQ--MYKGSADWGFIR 193
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASE 385
V++A++IPVIANG+I + D + L Q+G GVM G P L GQ W E
Sbjct: 194 NVKEAVSIPVIANGDICSIDDADTALDQSGADGVMIGRGAYGRPWLL-GQVMH-WFATGE 251
Query: 386 YLD 388
LD
Sbjct: 252 RLD 254
>gi|322420178|ref|YP_004199401.1| nifR3 family TIM-barrel protein [Geobacter sp. M18]
gi|320126565|gb|ADW14125.1| TIM-barrel protein, nifR3 family [Geobacter sp. M18]
Length = 321
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 99/316 (31%), Positives = 155/316 (49%), Gaps = 32/316 (10%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R LAPM + LP RL++R G+ L +T MVS + + + ++L +T DRP+ +Q
Sbjct: 15 RVFLAPMAGITNLPMRLIAREGGASLTFTEMVSVNGLTREGRKSFDLLKTTSGDRPIGMQ 74
Query: 210 FCGNDSKNLTEAAKLAEPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPL-LTNLVSSLR 267
G++ + L EAA+L E + + +DIN+GCP + V G A ++D PL + +V S+R
Sbjct: 75 LFGDEPEMLAEAARLVEEYGELLDINMGCPVKKVVGTGAGSALMKD--PLKVGRIVRSVR 132
Query: 268 QAVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+A ++P + KIR E R+ + GC + +H R+ Q M G A W I
Sbjct: 133 KATRLPFTVKIRTGWVCGDDTFPEVGRIAQEEGCDAITLHPRSRAQ--MFEGKADWAKIG 190
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP-------ALFTGQT-- 376
++ L IPVI +G++ DV L++TG VM A G + NP AL G+T
Sbjct: 191 ELKSTLKIPVIGSGDLFSADDVVRMLSETGCDAVMVARGAMGNPWLFREALALLAGETPV 250
Query: 377 ----RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHL----LTLPENSDVRLLVGKTN 428
+A +L+L ++ + R + M HL LP + R V N
Sbjct: 251 PPTVAERLAVARRHLELFTEF----EGGRVALMEMRKHLSWYSKGLPGAAQFRAAV---N 303
Query: 429 HIKDLRKAVDMLRERF 444
I+D + V + E F
Sbjct: 304 RIEDAAELVGAMEEFF 319
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 96/234 (41%), Gaps = 31/234 (13%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
R LAPM + LP RL++R G+ L +T MVS + + + ++L +T DRP+ +Q
Sbjct: 15 RVFLAPMAGITNLPMRLIAREGGASLTFTEMVSVNGLTREGRKSFDLLKTTSGDRPIGMQ 74
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLR-QEILM 198
G +LA E LL G + A + L+ I+
Sbjct: 75 -----LFGDEPEMLAEAARLVEEYGELLDINMGCPVKKVVGTGAGSALMKDPLKVGRIVR 129
Query: 199 STPEDR--PLIIQF-----CGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGA 250
S + P ++ CG+D+ E ++A E CD I ++ P+ A+ A
Sbjct: 130 SVRKATRLPFTVKIRTGWVCGDDT--FPEVGRIAQEEGCDAITLH---PRSRAQMFEGKA 184
Query: 251 YLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
DW + L S+L+ +PV D+ + RML GC + V
Sbjct: 185 ----DWAKIGELKSTLK----IPVIGS----GDLFSADDVVRMLSETGCDAVMV 226
>gi|424870485|ref|ZP_18294147.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. viciae WSM1455]
gi|393166186|gb|EJC66233.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. viciae WSM1455]
Length = 338
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 129/242 (53%), Gaps = 11/242 (4%)
Query: 131 PEDRPLIIQRTIFPRLGSP-----RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQ 185
P+D LI + P P R +LAPM +++P+R L+ R+G+ L T MV++ +
Sbjct: 3 PKDNHLISKELATPFQIGPVSVRNRVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRE 62
Query: 186 FIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAK 244
+ D L S RP ++Q G ++ + EAAK+A H D IDIN+GCP
Sbjct: 63 LVNDTAESWSRL-SAAGFRPHMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVI 121
Query: 245 RGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLL 302
G+ G+ L D L+ + +AV +PV+ K+R+ D N + AR E AG QL+
Sbjct: 122 GGYSGSALMRDPDHALGLIEATVKAVDIPVTLKMRLGWDENSINAPDIARRAEAAGIQLV 181
Query: 303 AVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362
+HGRT Q G A W+ I AVR+ ++IP+IANG+++ D + L ++G VM
Sbjct: 182 TIHGRTRMQ--FYEGRADWDAIRAVREVISIPLIANGDVETAGDAQEILRRSGADAVMIG 239
Query: 363 EG 364
G
Sbjct: 240 RG 241
>gi|418296228|ref|ZP_12908072.1| tRNA-dihydrouridine synthase protein [Agrobacterium tumefaciens
CCNWGS0286]
gi|355539660|gb|EHH08898.1| tRNA-dihydrouridine synthase protein [Agrobacterium tumefaciens
CCNWGS0286]
Length = 338
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 147/273 (53%), Gaps = 26/273 (9%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK-----KLRQEILMSTPEDR 204
R +LAPM ++LP+R L+ RYG+ L T MV++ + +A++ +L+ ++
Sbjct: 25 RAVLAPMSGVTDLPFRQLAWRYGAGLVVTEMVASRELVANRGESWARLKNAGMV------ 78
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
P ++Q G ++ + EAAK+A + GI DIN+GCP G+ G+ L D +L+
Sbjct: 79 PHMVQLAGREAHFMAEAAKIAADNGAGIIDINMGCPAKKVTGGYSGSALMRDPDHALSLI 138
Query: 264 SSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ AV VPV+ K+R+ D N + AR E AG QL+ +HGRT Q G A W
Sbjct: 139 EATVNAVDVPVTLKMRLGWDENTINAPDIARRAEAAGVQLITIHGRTRMQ--FYEGRADW 196
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT---AEGNLYNPALFTGQTRP 378
I AVR +++P+IANG+++ D L ++G VM A+G + PA+ G P
Sbjct: 197 NAIRAVRDVISVPLIANGDVETAEDAREILRRSGADAVMVGRGAQGQPWLPAVLAGHAAP 256
Query: 379 AWE----LASEYLDLVAQY---PVRLQYARGHV 404
+ +A E+ +++ ++ L++AR H+
Sbjct: 257 HRDDIPAIAIEHYEMMLEFYGMEAGLRHARKHL 289
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK 120
R +LAPM ++LP+R L+ RYG+ L T MV++ + +A++
Sbjct: 25 RAVLAPMSGVTDLPFRQLAWRYGAGLVVTEMVASRELVANR 65
>gi|421859860|ref|ZP_16292050.1| tRNA-dihydrouridine synthase [Paenibacillus popilliae ATCC 14706]
gi|410830621|dbj|GAC42487.1| tRNA-dihydrouridine synthase [Paenibacillus popilliae ATCC 14706]
Length = 333
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 124/224 (55%), Gaps = 6/224 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ +LAPM +RL+++ +G L MVS + + +E+L ++PL +Q
Sbjct: 15 QVVLAPMAGVCNPAFRLIAKEFGCGLVCAEMVSDKALVHGNERTREMLYVDEREKPLSLQ 74
Query: 210 FCGNDSKNLTEAAKLA--EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G D K+L EAAK+ E + D IDIN+GCP + GA D + +VS++
Sbjct: 75 IFGGDRKSLVEAAKIVDKESNADIIDINMGCPVPKVTKCDAGARWLLDPNKIYEMVSAVV 134
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV+ PV+ K+RI D V+ A+ +ERAG + +++HGRT +Q + TG A W +I
Sbjct: 135 DAVEKPVTVKMRIGWDDEHIYVVDNAKAIERAGGRAVSIHGRTREQ--LYTGKADWSYIR 192
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
V++A++IPVI NG++ D L +TG GVM G L NP
Sbjct: 193 EVKEAVSIPVIGNGDVATPEDARRMLDETGCDGVMIGRGALGNP 236
>gi|160878583|ref|YP_001557551.1| NifR3 family TIM-barrel protein [Clostridium phytofermentans ISDg]
gi|160427249|gb|ABX40812.1| TIM-barrel protein, nifR3 family [Clostridium phytofermentans ISDg]
Length = 324
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 129/226 (57%), Gaps = 5/226 (2%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
+L PM ++LP+RLL + G+ L YT MVSA + K + +L ++RP+ +Q
Sbjct: 14 LVLGPMAGVTDLPFRLLCKEQGADLIYTEMVSAKGIYYNNKNTEVLLEVEEKERPVALQL 73
Query: 211 CGNDSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G D ++E AK E + D +DIN+GCP G+ L + +VS++ +A
Sbjct: 74 FGEDPYIMSEMAKRIEHRNFDFLDINMGCPVPKVVNNGEGSALMLKPERIGEIVSAISKA 133
Query: 270 VQVPVSCKIR--IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
++ PV+ KIR +D VE A+++E++G +AVHGRT +Q +G A W+ I AV
Sbjct: 134 IKKPVTVKIRKGFTKDNINAVEVAKVIEQSGGAAIAVHGRTREQ--YYSGEADWDIIKAV 191
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
++A++IPVI NG++Q DV+ ++ TG VM A G NP F+
Sbjct: 192 KEAVSIPVIGNGDVQTPEDVKRMMSYTGCDAVMIARGVRGNPWFFS 237
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 99/238 (41%), Gaps = 40/238 (16%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
+L PM ++LP+RLL + G+ L YT MVSA + K + +L ++RP+ +Q
Sbjct: 14 LVLGPMAGVTDLPFRLLCKEQGADLIYTEMVSAKGIYYNNKNTEVLLEVEEKERPVALQ- 72
Query: 141 TIFPRLGSPRFILAPMVDASELPWRLLSRRYG----SHLCYTPMVSAHQFIADKKLRQEI 196
G +I+ SE+ R+ R + + C P V + + L+ E
Sbjct: 73 ----LFGEDPYIM------SEMAKRIEHRNFDFLDINMGCPVPKVVNNGEGSALMLKPER 122
Query: 197 L------MSTPEDRPLIIQF---CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGH 247
+ +S +P+ ++ D+ N E AK+ E G V R
Sbjct: 123 IGEIVSAISKAIKKPVTVKIRKGFTKDNINAVEVAKVIEQSG-------GAAIAVHGRTR 175
Query: 248 YGAYLQD-DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
Y + DW +++ ++++AV +PV DV + RM+ GC + +
Sbjct: 176 EQYYSGEADW----DIIKAVKEAVSIPVIGN----GDVQTPEDVKRMMSYTGCDAVMI 225
>gi|374291851|ref|YP_005038886.1| tRNA-dihydrouridine synthase B [Azospirillum lipoferum 4B]
gi|357423790|emb|CBS86650.1| tRNA-dihydrouridine synthase B [Azospirillum lipoferum 4B]
Length = 328
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 123/221 (55%), Gaps = 5/221 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM S+LP+R L +R G L + M+++ I + + ++ + PE+ P+ +Q
Sbjct: 15 ILAPMSGVSDLPFRRLVKRAGCGLVVSEMIASQAMIRENRQTLRMVETEPEEFPMAVQLA 74
Query: 212 GNDSKNLTEAAKLAEPHCDG-IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G + + + EAAKL + +DIN GCP GH G+ L D L ++ ++ +AV
Sbjct: 75 GCEPEVMAEAAKLNQDRGAAVVDINFGCPVKKVVNGHAGSSLMRDEALAGRILEAVVKAV 134
Query: 271 QVPVSCKIRI-YQDVNKTV-EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+PV+ K+R+ + + N+ AR+ E+ G +++ VHGRT Q TG A W ++ V+
Sbjct: 135 GIPVTLKMRLGWDETNRNAPNLARIAEQCGIRMVTVHGRTRMQ--FYTGTADWTYVRHVK 192
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
A++IPV+ NG+I V+ L ++G GVM G+ P
Sbjct: 193 DAVSIPVVVNGDITSFEAVDQALTESGADGVMIGRGSYGRP 233
Score = 42.7 bits (99), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
ILAPM S+LP+R L +R G L + M+++ I + + ++ + PE+ P+ +Q
Sbjct: 15 ILAPMSGVSDLPFRRLVKRAGCGLVVSEMIASQAMIRENRQTLRMVETEPEEFPMAVQ 72
>gi|374386519|ref|ZP_09644019.1| nifR3 family putative TIM-barrel protein [Odoribacter laneus YIT
12061]
gi|373224448|gb|EHP46788.1| nifR3 family putative TIM-barrel protein [Odoribacter laneus YIT
12061]
Length = 329
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 157/320 (49%), Gaps = 25/320 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG +LAPM D + P+R + +G+ Y+ VSA + + L +RP
Sbjct: 8 LGKYPLVLAPMEDVTNPPFRKFCKEFGADWLYSEFVSADALVRSVHKSLKKLTIEESERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G ++TEAAK+ E D ID+N GCP + VA++G GA L D PL+ +
Sbjct: 68 VTIQIYGRYIDSMTEAAKIVEEVQPDFIDLNFGCPVKRVAQKGA-GAGLLKDIPLMIEMA 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV+VPV+ K R+ D + + A L+ G Q LA+HGRT Q M G A W
Sbjct: 127 ERIVKAVKVPVTAKTRLGWDCEHIIIEDIAERLQDVGIQALAIHGRTRSQ--MYAGEADW 184
Query: 322 EHITAVRK--ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
E I V+ + IP+I NG+I + + GV VM G + P +F
Sbjct: 185 EPIGRVKNNPRIQIPIIGNGDITSPQKAKEAFDKYGVDAVMIGRGAIGRPWIFKQIKHYF 244
Query: 373 -TGQTRPAWELASEYLDLVAQYPVRLQY---ARGHVFNMCHHLLT----LPENSDVRLLV 424
TG+ P +A + L Q + + + RG + +M H+ LP ++R+ +
Sbjct: 245 QTGEMLPDLSVAEQIDILKEQILLSVDWIDEIRG-ILHMRRHMAAMFKGLPHFRELRIQM 303
Query: 425 GKTNHIKDLRKAVDMLRERF 444
+ I++L + +++RER+
Sbjct: 304 LRAESIEELWRIFELIRERY 323
>gi|94266587|ref|ZP_01290270.1| Dihydrouridine synthase TIM-barrel protein nifR3 [delta
proteobacterium MLMS-1]
gi|93452782|gb|EAT03317.1| Dihydrouridine synthase TIM-barrel protein nifR3 [delta
proteobacterium MLMS-1]
Length = 313
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 128/231 (55%), Gaps = 10/231 (4%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
P + AP+ S+LP+RLL R YG+ LCY+ M+S H + + E+L +T +RPL++
Sbjct: 13 PPLVAAPLAGYSDLPFRLLCREYGAGLCYSEMLSCHGLVRRQPATIEMLATTAAERPLLM 72
Query: 209 QFCGNDSKNLTEAAK-LAEPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSL 266
Q G + + + EAA L+ DGIDIN+GCP + V K+G GA L D L + ++
Sbjct: 73 QLFGAEPEVMGEAAAILSRLPIDGIDINMGCPVKKVVKKG-AGAALMRDPELAAAITGAV 131
Query: 267 RQAV-QVPVSCKIRI---YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
A +PV+ KIR ++ +N ++AR+L G + +H RT G A W
Sbjct: 132 TAAAGDLPVTVKIRSGWNHKQLNAP-DFARLLVAHGAAAVTIHARTWSDG--FAGRADWA 188
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
I AV++A+++PVI NG+I A +A TG GVM G L P +FT
Sbjct: 189 VIAAVKRAVSVPVIGNGDIGSYEQALAMMAATGCDGVMIGRGALGAPWVFT 239
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 39/61 (63%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P + AP+ S+LP+RLL R YG+ LCY+ M+S H + + E+L +T +RPL++
Sbjct: 13 PPLVAAPLAGYSDLPFRLLCREYGAGLCYSEMLSCHGLVRRQPATIEMLATTAAERPLLM 72
Query: 139 Q 139
Q
Sbjct: 73 Q 73
>gi|294777525|ref|ZP_06742976.1| TIM-barrel protein, nifR3 family [Bacteroides vulgatus PC510]
gi|319640124|ref|ZP_07994851.1| hypothetical protein HMPREF9011_00448 [Bacteroides sp. 3_1_40A]
gi|345517145|ref|ZP_08796623.1| dehydrogenase [Bacteroides sp. 4_3_47FAA]
gi|254833910|gb|EET14219.1| dehydrogenase [Bacteroides sp. 4_3_47FAA]
gi|294448593|gb|EFG17142.1| TIM-barrel protein, nifR3 family [Bacteroides vulgatus PC510]
gi|317388402|gb|EFV69254.1| hypothetical protein HMPREF9011_00448 [Bacteroides sp. 3_1_40A]
Length = 329
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 156/326 (47%), Gaps = 35/326 (10%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D ++ +RL+ +++G+ + YT VSA I + L E+RP
Sbjct: 8 LGRYPIFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSADALIRSVGKTMQKLNINDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D++ + EAAK+ E H D +DIN GCP + VA +G GA + + PL+ +
Sbjct: 68 VAIQIYGRDTETMVEAAKIVEEAHPDILDINFGCPVKRVAGKGA-GAGMLQNIPLMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
++ V++PV+ K R+ D V+ A L+ G + L +HGRT Q M TG A W
Sbjct: 127 RAVVDTVKIPVTVKTRLGWDNEHKIIVDLAEQLQDCGIEALTIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I V+K + IP+I NG+I + C Q GV +M + P +F
Sbjct: 185 SLIGEVKKNPRMHIPIIGNGDITTPQRAKECFDQYGVDAIMIGRASFGRPWIFKEVKHYI 244
Query: 373 -TGQTRPA----WELA---SEYLDLVAQYPVRLQYARGHVFNMCHHLLT------LPENS 418
TG+ PA W L E LD V L R + ++ HL +P
Sbjct: 245 ETGKELPALSFEWRLNVLRQEVLD-----SVNLLDERRGILHVRRHLAASPLFKGIPNFK 299
Query: 419 DVRLLVGKTNHIKDLRKAVDMLRERF 444
+ R+ + + +K+L +D +R +
Sbjct: 300 ETRIAMLRAETVKELFSILDYIRGNY 325
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LG LAPM D ++ +RL+ +++G+ + YT VSA I + L E+RP
Sbjct: 8 LGRYPIFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSADALIRSVGKTMQKLNINDEERP 67
Query: 136 LIIQ 139
+ IQ
Sbjct: 68 VAIQ 71
>gi|335289247|ref|XP_003355825.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Sus scrofa]
Length = 493
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 145/294 (49%), Gaps = 25/294 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS----TPEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + + K++ E L + P+DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEALSTVDFVAPDDRV 72
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q +D++ AKL E GID+N+GCP+ + +G GA L
Sbjct: 73 VFRTCEREQSRVVFQMGTSDAERALAVAKLVENDVAGIDVNMGCPKEYSTKGGMGAALLS 132
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + ++S+L + + PV+CKIR+ + T+ + +ER G +AVHGR ++R
Sbjct: 133 DPDKIEKILSTLVKGTRRPVTCKIRLLPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQ 192
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ S E I A+ + L+IPVIANG IQ D+E T + VM A ++NP+
Sbjct: 193 HP--VSCEAIKAIAETLSIPVIANGGSHDHIQKYLDIEDFRQATAASSVMVARAAMWNPS 250
Query: 371 LFTGQT-RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+F + RP E+ +Y+ QY + + +C L E+ RLL
Sbjct: 251 VFLKEGPRPLEEVMQKYIRYAVQYD---NHHTNTKYCLCQMLREQLESPQGRLL 301
>gi|291390365|ref|XP_002711677.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog
[Oryctolagus cuniculus]
Length = 493
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 147/294 (50%), Gaps = 25/294 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST----PEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + + +++ E+L + P+DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCRRVVNEVLSTVDFVAPDDRV 72
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q +D++ A+L E GID+N+GCP+ + +G GA L
Sbjct: 73 VFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLS 132
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + ++S+L + + PV+CKIRI + T+ + +E+ G +AVHGR ++R
Sbjct: 133 DPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIEKTGIAAIAVHGRKREERPQ 192
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ S E I A+ + L+IPVIANG IQ D+E T + VM A ++NP+
Sbjct: 193 HP--VSCEVIKAIAETLSIPVIANGGSHDHIQQHLDIEDFRQATAASSVMVARAAMWNPS 250
Query: 371 LFTGQT-RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+F + RP E+ +Y+ QY + + +C L E+S RLL
Sbjct: 251 IFLKEGLRPLEEVMQKYIRYAVQYD---NHYTNTKYCLCQMLREQLESSQGRLL 301
>gi|94496405|ref|ZP_01302982.1| Dihydrouridine synthase TIM-barrel protein nifR3 [Sphingomonas sp.
SKA58]
gi|94424151|gb|EAT09175.1| Dihydrouridine synthase TIM-barrel protein nifR3 [Sphingomonas sp.
SKA58]
Length = 343
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 136/271 (50%), Gaps = 16/271 (5%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
+LAPM +++P+R L RRYGS L T M+++ I + + + P + P+ +Q
Sbjct: 21 VVLAPMTGVTDMPFRTLVRRYGSGLNVTEMIASAAMIRETRQSLQKAAWHPLEEPVSMQL 80
Query: 211 CGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G + + +AA+L A+ IDIN+GCP G G+ L D PL +L+ + +A
Sbjct: 81 AGCSPREMADAARLNADRGAAIIDINMGCPVKKVVNGDAGSALMRDLPLAASLIKATVEA 140
Query: 270 VQVPVSCKIRIYQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
V VPV+ K+R+ D +N E A + E G +L+ VHGRT +Q M G A W +
Sbjct: 141 VDVPVTVKMRMGWDHASLNAP-ELAHIAEDLGAKLITVHGRTRNQ--MYKGSADWAFVRK 197
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP-------ALFTGQTR-P 378
V+ A+ +PV+ NG+I + D + L Q+G GVM G P A T TR P
Sbjct: 198 VKDAVKLPVVVNGDICSIEDADTALEQSGADGVMIGRGAYGRPWLIGQVMAWLTDGTRLP 257
Query: 379 AWELASEYLDLVAQYPVRLQ-YARGHVFNMC 408
L +Y +V Y L Y R NM
Sbjct: 258 DPSLEEQYHVIVEHYRAMLDHYDRHTGVNMA 288
Score = 40.0 bits (92), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+LAPM +++P+R L RRYGS L T M+++ I + + + P + P+ +Q
Sbjct: 21 VVLAPMTGVTDMPFRTLVRRYGSGLNVTEMIASAAMIRETRQSLQKAAWHPLEEPVSMQ 79
>gi|253576834|ref|ZP_04854159.1| tRNA-dihydrouridine synthase [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251843701|gb|EES71724.1| tRNA-dihydrouridine synthase [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 333
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 124/224 (55%), Gaps = 6/224 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ +LAPM +RL+++ +G+ L MVS + K +E+L ++PL +Q
Sbjct: 12 QVVLAPMAGVCNPAFRLIAKEFGTGLVCAEMVSDKAILHGNKRTREMLFVDEREKPLSLQ 71
Query: 210 FCGNDSKNLTEAAKLA--EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G D +L EAAK+ E + D IDIN+GCP + GA D + +V+++
Sbjct: 72 IFGGDRASLVEAAKVVDQETNADIIDINMGCPVPKVTKCDAGARWLLDPNKIYEMVAAVV 131
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV PV+ K+RI D V+ A+ +ERAG + ++VHGRT +Q + TG A W +I
Sbjct: 132 DAVSKPVTVKMRIGWDAEHIYVVDNAKAVERAGGKAVSVHGRTREQ--LYTGKADWSYIR 189
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
V++A++IPVI NG++ D + L +TG GVM G L NP
Sbjct: 190 QVKEAVSIPVIGNGDVATPEDAKRMLDETGCDGVMIGRGALGNP 233
>gi|157818491|ref|NP_001099651.1| tRNA-dihydrouridine synthase 2-like [Rattus norvegicus]
gi|149038072|gb|EDL92432.1| dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)
(predicted), isoform CRA_a [Rattus norvegicus]
gi|165971659|gb|AAI58729.1| Dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)
[Rattus norvegicus]
Length = 493
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 134/264 (50%), Gaps = 22/264 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST----PEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + + +++ E+L + P+DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCRRVVNEVLSTVDFVAPDDRV 72
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q +D++ A+L E GID+N+GCP+ + +G GA L
Sbjct: 73 VFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLS 132
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + ++S+L + PV+CKIRI + T+ + +ER G +AVHGR D+R
Sbjct: 133 DPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGRNRDERPQ 192
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ S E I A+ + L+IPVIANG IQ D+E T + VM A ++NP+
Sbjct: 193 HP--VSCEVIRAIAETLSIPVIANGGSHDHIQQHLDIEDFRQATAASSVMVARAAMWNPS 250
Query: 371 LFTGQT-RPAWELASEYLDLVAQY 393
+F RP E+ +Y+ QY
Sbjct: 251 IFLKDGLRPLEEVMQKYIRYAVQY 274
>gi|323141551|ref|ZP_08076436.1| TIM-barrel protein, nifR3 family [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413963|gb|EFY04797.1| TIM-barrel protein, nifR3 family [Phascolarctobacterium
succinatutens YIT 12067]
Length = 360
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 125/240 (52%), Gaps = 9/240 (3%)
Query: 141 TIFPRLG----SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEI 196
IF +G S LAPM ++LP+RL+ RR G + + MVSA + E+
Sbjct: 23 VIFMNIGNIELSAPLALAPMAGITDLPFRLICRRLGCGMTVSEMVSAKGLLYKNVKTTEM 82
Query: 197 LMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDD 255
L +RP IQ G+ L EAA++ E D ID N+GCP G+ L +
Sbjct: 83 LRIDDGERPTAIQLFGSVPAELAEAARMVEASGADMIDFNMGCPVPKIVNNGEGSALMKN 142
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRI-YQDVNK-TVEYARMLERAGCQLLAVHGRTVDQRG 313
L ++++++ +AV++PV+ K R + D N+ VE AR +E AG +AVHGRT Q
Sbjct: 143 PQLAHDILAAMVKAVKIPVTVKFRAGWDDANRNAVEVARAVEAAGVSAVAVHGRTRQQ-- 200
Query: 314 MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
G A W I V++A+ +PV NG+I +AD L QTG G+M G NP LFT
Sbjct: 201 FYEGKADWSIIADVKQAVKVPVFGNGDIFTVADGLRMLEQTGCDGLMIGRGADGNPWLFT 260
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 110/249 (44%), Gaps = 40/249 (16%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
+L +P LAPM ++LP+RL+ RR G + + MVSA + E+L +R
Sbjct: 32 ELSAP-LALAPMAGITDLPFRLICRRLGCGMTVSEMVSAKGLLYKNVKTTEMLRIDDGER 90
Query: 135 PLIIQRTIFPRLGSPRFILAPMVDASELPW----------RLLSRRYGSHLCYTPMVSAH 184
P IQ +F + + A MV+AS ++++ GS L P + AH
Sbjct: 91 PTAIQ--LFGSVPAELAEAARMVEASGADMIDFNMGCPVPKIVNNGEGSALMKNPQL-AH 147
Query: 185 QFIADKKLRQEILMSTPEDRPLIIQF-CGND--SKNLTEAAKLAEPHCDGIDINIGCPQM 241
+A M P+ ++F G D ++N E A+ E G+ +
Sbjct: 148 DILA--------AMVKAVKIPVTVKFRAGWDDANRNAVEVARAVE--AAGVSA-VAVHGR 196
Query: 242 VAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQL 301
++ + G + DW ++++ ++QAV+VPV D+ + RMLE+ GC
Sbjct: 197 TRQQFYEG---KADW----SIIADVKQAVKVPVFGN----GDIFTVADGLRMLEQTGCDG 245
Query: 302 LAVHGRTVD 310
L + GR D
Sbjct: 246 LMI-GRGAD 253
>gi|340350395|ref|ZP_08673387.1| tRNA-dihydrouridine synthase [Prevotella nigrescens ATCC 33563]
gi|339608473|gb|EGQ13368.1| tRNA-dihydrouridine synthase [Prevotella nigrescens ATCC 33563]
Length = 323
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 154/316 (48%), Gaps = 20/316 (6%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
G LAPM D +++ +R +S+R+G+ + YT VSA I K ++ E+RP
Sbjct: 8 FGERPLFLAPMEDVTDIGFRKMSKRFGAAMVYTEFVSADAVIRSIKSTLNKIVIDEEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D +++ EAAK+ E D IDIN GCP + VA +G G+ + + PLL +
Sbjct: 68 VGIQIYGKDVESMVEAAKIVEQVKPDVIDINFGCPVKKVANKGA-GSGMLKNIPLLLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV PV+ K R+ D N + + A L+ G Q L +HGRT Q M TG A W
Sbjct: 127 REVVKAVNTPVTVKTRLGWDDNNLIITDLAEQLQDCGIQALTIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRP- 378
I V+K + IP+I NG++ +AD + GV VM P LF+ P
Sbjct: 185 TLIGEVKKNPRIHIPIIGNGDVTSVADAQKRFDSYGVDAVMIGRATFGCPWLFSETNAPD 244
Query: 379 AWELASEYLDLVAQYPVRLQYARGHVFNMCHH----------LLTLPENSDVRLLVGKTN 428
A +L ++ + + +R+ + + H +P+ R+ + + N
Sbjct: 245 AQKLTLDHKIDILEEMLRINVEKIDEYRGILHTRRHLAASPIFKGVPDFKQTRIAMLRAN 304
Query: 429 HIKDLRKAVDMLRERF 444
+ +L +++ RER
Sbjct: 305 KMDELIGILEICRERL 320
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
G LAPM D +++ +R +S+R+G+ + YT VSA I K ++ E+R
Sbjct: 7 DFGERPLFLAPMEDVTDIGFRKMSKRFGAAMVYTEFVSADAVIRSIKSTLNKIVIDEEER 66
Query: 135 PLIIQ 139
P+ IQ
Sbjct: 67 PVGIQ 71
>gi|387824267|ref|YP_005823738.1| tRNA dihydrouridine synthase B [Francisella cf. novicida 3523]
gi|328675866|gb|AEB28541.1| tRNA dihydrouridine synthase B [Francisella cf. novicida 3523]
Length = 325
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 164/314 (52%), Gaps = 25/314 (7%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM + +R + + +G+ L YT MVS + E+L ++PL IQ
Sbjct: 15 VLAPMAGFCDSAFRTICKEHGAGLIYTEMVSNKAVVERNWETMEMLYMENSEKPLGIQIF 74
Query: 212 GNDSKNLTEAAK-LAE-PHCDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G D + A K +AE CD +DIN+GCP VAK+ GA L D + +++++ +
Sbjct: 75 GTDIDSFVGATKYIAENTECDFLDINMGCPMPKVAKKLQAGAALLKDVNRIHEILTAVVK 134
Query: 269 AVQVPVSCKIRIY---QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV PV+ K+RI Q++N +E A+ + AG +A+HGRT +Q M TG A+W+ I
Sbjct: 135 AVHKPVTVKMRIGWDDQNIN-AIEVAKACQDAGVSAIAIHGRTREQ--MYTGKANWDIIR 191
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTR 377
VRKA+ VI NG++ C +A + TGV VM + NP +F TG+
Sbjct: 192 DVRKAVDTVVIGNGDVFCPHSAKAMIEHTGVDAVMVGRASRGNPWIFRQIAEYLNTGELI 251
Query: 378 PAWELASEYLDLVAQY---PVRLQYARGHVFNMCHH----LLTLPENSDVRLLVGKTNHI 430
P + E +D++ ++ ++L+ A+ V + H L LP + + R+ + + H
Sbjct: 252 PP-PTSVERVDVLEEHLRRLIKLKTAKVAVKEIRTHASFYLADLPGSKEFRMKLNQLEHE 310
Query: 431 KDLRKAVDMLRERF 444
+++ KA++ + F
Sbjct: 311 QEIFKALEEYKHSF 324
>gi|42560628|ref|NP_975079.1| NifR transcriptional regulator [Mycoplasma mycoides subsp. mycoides
SC str. PG1]
gi|42492124|emb|CAE76721.1| Transcriptional regulator (involved in nitrogen regulation; NifR3
family [Mycoplasma mycoides subsp. mycoides SC str. PG1]
gi|301321309|gb|ADK69952.1| TIM-barrel protein, nifR3 family [Mycoplasma mycoides subsp.
mycoides SC str. Gladysdale]
Length = 324
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 157/316 (49%), Gaps = 29/316 (9%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ + PM S +R++S+++G+ L Y MVS + D K +L + P+ +Q
Sbjct: 11 KVVQGPMAGVSNEAFRIISKQHGASLVYAEMVSVAGMVHDNKKTLNMLNVNKIEYPMSMQ 70
Query: 210 FCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSL 266
GND +A + E + CD ID+N+GCP VA R G+ L L+ +V ++
Sbjct: 71 IFGNDVDEFIKATQWIEKNVDCDIIDLNLGCPAPKVAIRSQSGSALLKTPELIYEIVKNV 130
Query: 267 RQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
PV+ KIR+ D N VE A+++E+AG +AVH RT + TG A WE I
Sbjct: 131 VNNTNKPVTAKIRLGWDKNSVNAVEVAKLIEKAGASAIAVHART--RNDFYTGHADWEKI 188
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQ- 375
V++A++IPVI NG++ + L +TG VM + NP +F TG+
Sbjct: 189 KEVKQAVSIPVIGNGDVIDAKSAKKMLDETGCDAVMVSRACQGNPWIFDQINYYLKTGKE 248
Query: 376 -TRPAWE----LASEYLDLVAQYPVRLQYA----RGHVFNMCHHLLTLPENSDVRLLVGK 426
+P++E ++LDL+ + + Q+A R H + +L L ++L K
Sbjct: 249 LEKPSFEEWKTTVLQHLDLLVKLKTK-QFAIKEFRKH---LTWYLDVLNNKQLTKILKEK 304
Query: 427 TNHIKDLRKAVDMLRE 442
N I+ ++ D+++E
Sbjct: 305 ANKIETIKDVEDIIKE 320
>gi|374605052|ref|ZP_09677995.1| tRNA-dihydrouridine synthase 1 [Paenibacillus dendritiformis C454]
gi|374389322|gb|EHQ60701.1| tRNA-dihydrouridine synthase 1 [Paenibacillus dendritiformis C454]
Length = 330
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 124/227 (54%), Gaps = 6/227 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ +LAPM +RL+++ +G L MVS + + +E+L ++PL +Q
Sbjct: 12 QVVLAPMAGVCNPAFRLIAKEFGCGLVCAEMVSDKALVHGNERTREMLYVDDREKPLSLQ 71
Query: 210 FCGNDSKNLTEAAKLA--EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G D ++L EAAK+ E + D IDIN+GCP + GA D + +VS++
Sbjct: 72 IFGGDRQSLVEAAKIVDKESNADIIDINMGCPVPKVTKCDAGARWLLDPNKIYEMVSAVV 131
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV PV+ K+RI D V+ A+ +ERAG Q ++VHGRT +Q + TG A W +I
Sbjct: 132 DAVDKPVTVKMRIGWDDEHIYVVDNAKAVERAGGQAVSVHGRTREQ--LYTGKADWSYIR 189
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
V++A++IPVI NG++ D L +TG GVM G L NP +
Sbjct: 190 QVKEAVSIPVIGNGDVATPEDARRMLDETGCDGVMIGRGALGNPWML 236
>gi|343958368|dbj|BAK63039.1| tRNA-dihydrouridine synthase 2-like protein [Pan troglodytes]
Length = 493
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 144/294 (48%), Gaps = 25/294 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS----TPEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + I K++ E+L + P+DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRV 72
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q +D++ A+L E GID+N+GCP+ + +G A L
Sbjct: 73 VFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMEAALLS 132
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + ++S+L + PV+CKIRI + T+ + +ER G +AVHGR ++R
Sbjct: 133 DPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQ 192
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ S E I A+ L+IPVIANG IQ +D+E T + VM A ++NP+
Sbjct: 193 HP--VSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWNPS 250
Query: 371 LFTGQT-RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+F + RP E+ +Y+ QY + + +C L E+ RLL
Sbjct: 251 IFLKEGLRPLEEVMQKYIRYAVQYD---NHYTNTKYCLCQMLREQLESPQGRLL 301
>gi|409990663|ref|ZP_11274007.1| nifR3 family TIM-barrel protein [Arthrospira platensis str. Paraca]
gi|291568799|dbj|BAI91071.1| hypothetical protein [Arthrospira platensis NIES-39]
gi|409938479|gb|EKN79799.1| nifR3 family TIM-barrel protein [Arthrospira platensis str. Paraca]
Length = 338
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 135/245 (55%), Gaps = 17/245 (6%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYG-SHLCYTPMVSAHQFIADKKLRQEILMST-PEDRP 205
+ R + +P+ ++L +R L RRY + + YT MV A Q I +KL ILM P +RP
Sbjct: 27 NSRVLQSPLSGVTDLVFRRLVRRYAPNSMMYTEMVHASQIIHVRKL--PILMEIDPGERP 84
Query: 206 LIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
+ IQ L EAA+ A E D ID+N+GCP + G+ L + +V
Sbjct: 85 ISIQLFDCRPDFLVEAARKAVEEGADTIDVNMGCPVNKITKNGGGSSLLRQPEIAEKIVR 144
Query: 265 SLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
SL +AV VP++ K R+ D ++ +++++ +E AG Q+L +HGRT Q TG A+WE
Sbjct: 145 SLNEAVSVPITVKTRLGWDDDEINILDFSKRMEDAGAQMLTIHGRTRAQG--YTGKANWE 202
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TG 374
I V+++L+IPVIANG+I ++ CL +TG GVM + G L P L TG
Sbjct: 203 WIARVKQSLSIPVIANGDIVSVSSAVQCLQETGADGVMCSRGTLGYPFLVGEIDYFLKTG 262
Query: 375 QTRPA 379
Q + A
Sbjct: 263 QMKTA 267
>gi|302385513|ref|YP_003821335.1| nifR3 family TIM-barrel protein [Clostridium saccharolyticum WM1]
gi|302196141|gb|ADL03712.1| TIM-barrel protein, nifR3 family [Clostridium saccharolyticum WM1]
Length = 326
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 123/226 (54%), Gaps = 7/226 (3%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
ILAPM ++LP+R L R G + T MVSA + + E+L P + P+ +Q
Sbjct: 14 LILAPMAGVTDLPFRFLCREQGCGMAVTEMVSAKAILYKNRNTNELLKVAPGEGPVSLQL 73
Query: 211 CGNDSKNLTE-AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G+D + + + AA++ E ID+N+GCP G+ L D L +++S+ +A
Sbjct: 74 FGSDPEIMADIAAQVEEGPYAFIDVNMGCPMPKIVNNGEGSALMKDIGLAERILTSMVKA 133
Query: 270 VQVPVSCKIR---IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
V+ PV+ K R +D N VE+A+M E G +AVHGRT +Q +G A W I
Sbjct: 134 VKKPVTVKFRKGFTEEDCN-AVEFAKMAESCGVAAVAVHGRTREQ--YYSGTADWTIIRK 190
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
V++A+ IPVI NG++ D +A + +TG GVM A G NP +F
Sbjct: 191 VKEAVAIPVIGNGDVFKPEDAKALMEETGCDGVMIARGAKGNPWIF 236
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 95/230 (41%), Gaps = 32/230 (13%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
ILAPM ++LP+R L R G + T MVSA + + E+L P + P+ +Q
Sbjct: 14 LILAPMAGVTDLPFRFLCREQGCGMAVTEMVSAKAILYKNRNTNELLKVAPGEGPVSLQ- 72
Query: 141 TIFPRLGSPRFILAPM-VDASELPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQE 195
GS I+A + E P+ + G C P + + D L +
Sbjct: 73 ----LFGSDPEIMADIAAQVEEGPYAFIDVNMG---CPMPKIVNNGEGSALMKDIGLAER 125
Query: 196 ILMSTPE--DRPLIIQFCGNDSK---NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGA 250
IL S + +P+ ++F ++ N E AK+AE C + + + +Y
Sbjct: 126 ILTSMVKAVKKPVTVKFRKGFTEEDCNAVEFAKMAE-SCGVAAVAV---HGRTREQYYSG 181
Query: 251 YLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQ 300
DW ++ +++AV +PV DV K + ++E GC
Sbjct: 182 TA--DW----TIIRKVKEAVAIPVIGN----GDVFKPEDAKALMEETGCD 221
>gi|333373060|ref|ZP_08464978.1| tRNA-dihydrouridine synthase [Desmospora sp. 8437]
gi|332970947|gb|EGK09921.1| tRNA-dihydrouridine synthase [Desmospora sp. 8437]
Length = 335
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 121/223 (54%), Gaps = 6/223 (2%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
+LAPM +RL++R +G+ L MVS + +++L+ ++PL +Q
Sbjct: 17 VVLAPMAGVCNPAFRLIAREFGTGLVCAEMVSDKAILHGNARTKKMLLVDEREKPLSLQI 76
Query: 211 CGNDSKNLTEAAKLAEP--HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G D + L EAA++ + + D IDIN+GCP + GA D + +VS++ +
Sbjct: 77 FGGDKETLVEAARVVDKQTNADIIDINMGCPVPKVIKCDAGARWLLDPNKIEEMVSAVVE 136
Query: 269 AVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV PV+ K+R D N VE A+ LERAG Q +++HGRT Q M TG A W+ I
Sbjct: 137 AVDKPVTVKMRTGWDENHIYAVENAKALERAGAQAVSLHGRTRQQ--MYTGKADWDIIRQ 194
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
V++A+ IPVI NG++Q D + L TG GVM L NP
Sbjct: 195 VKEAVKIPVIGNGDVQTPQDAKRMLDTTGCDGVMIGRAALGNP 237
>gi|207342565|gb|EDZ70296.1| YML080Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 135
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 81/117 (69%), Gaps = 3/117 (2%)
Query: 137 IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE- 195
+ R +F ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++
Sbjct: 17 LTGRQLFDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDN 76
Query: 196 --ILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGA 250
L + DRPL++QFC ND + L AAKL E CD +D+N+GCPQ +AK+GHYG+
Sbjct: 77 WSSLDGSSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGS 133
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE---ILMS 129
+ ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++ L
Sbjct: 23 FDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLDG 82
Query: 130 TPEDRPLIIQ 139
+ DRPL++Q
Sbjct: 83 SSVDRPLVVQ 92
>gi|150392209|ref|YP_001322258.1| nifR3 family TIM-barrel protein [Alkaliphilus metalliredigens QYMF]
gi|149952071|gb|ABR50599.1| putative TIM-barrel protein, nifR3 family [Alkaliphilus
metalliredigens QYMF]
Length = 321
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 96/306 (31%), Positives = 157/306 (51%), Gaps = 27/306 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ LAPM ++LP+RL+ ++ GS + Y MVSA K + +L PE++P +Q
Sbjct: 11 KVFLAPMAGVTDLPFRLICKKMGSGMVYMEMVSAKGLYYGDKKTERLLQIHPEEKPAALQ 70
Query: 210 FCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G++ + +AA + + I DIN+GCP + K G G+ L D P +V ++
Sbjct: 71 IFGSEPDIMAKAAYMLNDRENIILDINMGCPTPKIVKNGD-GSALMLDPPRAARVVKAVV 129
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+ PV+ KIR D + VE A++LE +G Q +AVHGRT +Q +G A W+ I
Sbjct: 130 RESIKPVTVKIRKGWDDKQINAVEMAKILEDSGAQAIAVHGRTREQ--FYSGKADWDIIK 187
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQT- 376
V++A+TIPVI NG++ + D L QT G+M G NP +F G+
Sbjct: 188 QVKEAVTIPVIGNGDVFSVEDARDMLEQTQCDGIMIGRGAQGNPWIFKRVDAYMKNGEVL 247
Query: 377 -RPAW----ELASEYLDLVAQYP---VRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTN 428
P E+ E++DLV +Y + ++ R HV +L L ++ +R L+ +
Sbjct: 248 AEPGLEERVEMILEHMDLVIKYKGEYIGIREMRKHV---GWYLKGLKNSASIRNLINRIE 304
Query: 429 HIKDLR 434
++++
Sbjct: 305 SSQEMK 310
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 106/246 (43%), Gaps = 54/246 (21%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ LAPM ++LP+RL+ ++ GS + Y MVSA K + +L PE++P +Q
Sbjct: 11 KVFLAPMAGVTDLPFRLICKKMGSGMVYMEMVSAKGLYYGDKKTERLLQIHPEEKPAALQ 70
Query: 140 RTIFPRLGSPRFILAP---MVDASE-----------LPWRLLSRRYGSHLCYTPMVSAHQ 185
IF GS I+A M++ E P +++ GS L P +A
Sbjct: 71 --IF---GSEPDIMAKAAYMLNDRENIILDINMGCPTP-KIVKNGDGSALMLDPPRAAR- 123
Query: 186 FIADKKLRQEILMSTPEDRPLIIQF-CGNDSK--NLTEAAKLAEPHCDGIDINIGCPQMV 242
+ +R+ I +P+ ++ G D K N E AK+ E Q +
Sbjct: 124 -VVKAVVRESI-------KPVTVKIRKGWDDKQINAVEMAKILEDS---------GAQAI 166
Query: 243 AKRGHYGAYL---QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYAR-MLERAG 298
A G + DW +++ +++AV +PV ++ +VE AR MLE+
Sbjct: 167 AVHGRTREQFYSGKADW----DIIKQVKEAVTIPVIGNGDVF-----SVEDARDMLEQTQ 217
Query: 299 CQLLAV 304
C + +
Sbjct: 218 CDGIMI 223
>gi|354585826|ref|ZP_09004657.1| TIM-barrel protein, nifR3 family [Paenibacillus lactis 154]
gi|353184151|gb|EHB49679.1| TIM-barrel protein, nifR3 family [Paenibacillus lactis 154]
Length = 341
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 121/224 (54%), Gaps = 6/224 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ +LAPM +RL+++ +G+ L MVS + K QE+L ++PL +Q
Sbjct: 12 QVVLAPMAGVCNPAFRLIAKEFGTGLVCAEMVSGKAIVHGNKRTQEMLFVDEREKPLSLQ 71
Query: 210 FCGNDSKNLTEAAKLAE--PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G D +L EAAK+ + + D IDIN+GCP + GA D + +V+++
Sbjct: 72 IFGGDRDSLVEAAKVVDQQTNADIIDINMGCPAPKVTKMDAGARWLLDSNKIYEMVAAVV 131
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV PV+ K+R D VE A+ +ERAG Q ++VHGRT +Q + TG A W I
Sbjct: 132 DAVNKPVTVKMRTGWDSEHIFAVENAQAVERAGGQAVSVHGRTREQ--LYTGHADWNIIR 189
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
V++A++IPVI NG++ D + L TG GVM G L NP
Sbjct: 190 QVKEAVSIPVIGNGDVVTPEDAKRMLDTTGCDGVMIGRGALGNP 233
>gi|329925512|ref|ZP_08280386.1| TIM-barrel protein, nifR3 family [Paenibacillus sp. HGF5]
gi|328939795|gb|EGG36135.1| TIM-barrel protein, nifR3 family [Paenibacillus sp. HGF5]
Length = 343
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 122/224 (54%), Gaps = 6/224 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ +LAPM +RL+++ +G+ L MVS + K QE+L ++PL +Q
Sbjct: 14 QVVLAPMAGVCNPAFRLIAKEFGTGLVCAEMVSGKAIVHGNKRTQEMLFVDEREKPLSLQ 73
Query: 210 FCGNDSKNLTEAAKLAE--PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G D +L EAAK+ + + D IDIN+GCP + GA D + +V+++
Sbjct: 74 IFGGDRVSLVEAAKVVDQQTNADIIDINMGCPAPKVTKMDAGARWLLDSNKIYEMVAAVV 133
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV PV+ K+R D + VE A+ +ERAG Q ++VHGRT +Q + TG A W+ I
Sbjct: 134 DAVNKPVTVKMRTGWDSDHIYAVENAQAVERAGGQAVSVHGRTREQ--LYTGHADWDIIR 191
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
V++A++IPVI NG++ D L TG GVM G L NP
Sbjct: 192 QVKEAVSIPVIGNGDVVTPEDARRMLDTTGCDGVMIGRGALGNP 235
>gi|313212119|emb|CBY16141.1| unnamed protein product [Oikopleura dioica]
Length = 250
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 127/240 (52%), Gaps = 21/240 (8%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS----TPEDRPL- 206
ILAPMV LP RLL G+ L YT + H+ + +K + + T ED P+
Sbjct: 6 ILAPMVRIGTLPTRLLCLEEGADLVYTEEIIDHRLMDCRKFEHKNGLVEFKLTAEDNPVL 65
Query: 207 ----------IIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
I+Q D +AAKL + H G+D+N+GCP+ + +G GA +
Sbjct: 66 QTCAKEKEKVILQLGTADPNRAVKAAKLCQDHISGVDVNMGCPKAYSTKGGMGAAMLKTP 125
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
L +++ +L Q + +PV+CKIR + + +TVE+A+ +E+ G LA+HGR +R
Sbjct: 126 DLAESILKALVQELDIPVTCKIRCLKTLEETVEFAKRMEKTGIAALAIHGRQKTERSRAD 185
Query: 317 GLAS-WEHITAVRKALTIPVIANGN---IQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
S W I V K+L IPV+ANG I+ +D+ +TG AGV+ A ++NP++F
Sbjct: 186 PCRSLW--IAEVAKSLKIPVLANGGSGEIKSRSDIGQFQEKTGTAGVLVARAAMWNPSVF 243
>gi|381169129|ref|ZP_09878303.1| putative tRNA-dihydrouridine synthase (Nitrogen regulation protein
nifR3) [Phaeospirillum molischianum DSM 120]
gi|380681743|emb|CCG43125.1| putative tRNA-dihydrouridine synthase (Nitrogen regulation protein
nifR3) [Phaeospirillum molischianum DSM 120]
Length = 336
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 97/306 (31%), Positives = 159/306 (51%), Gaps = 24/306 (7%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE--DRPLIIQ 209
ILAPM ++LP R L+RR G+ L + M+++ I ++ RQ + M++ E D+P +Q
Sbjct: 22 ILAPMAGVTDLPTRRLARRLGAGLVVSEMIASQAMI--RQNRQTMRMASHESVDQPTSVQ 79
Query: 210 FCGNDSKNLTEAAKLAEPHCDG-IDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G + + + EAA+L + IDIN+GCP + VA +G GA L D L L+ ++
Sbjct: 80 LAGCEPEAMAEAARLNQDMGAAIIDINMGCPVKKVAVKGESGAALMKDEVLAGRLMEAVV 139
Query: 268 QAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+AV +PV+ K+R+ D AR+ E +G +++ VHGRT Q M G A W I
Sbjct: 140 RAVDLPVTLKMRMGWDQTCLNAPRLARIAEESGIRMVTVHGRTRSQ--MYGGRADWAFIG 197
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP--------ALFTGQTR 377
V++A++IPVI NG++ + D + +G GVM G++ P L TG+ R
Sbjct: 198 EVKRAVSIPVIGNGDVCSIEDAISLFELSGADGVMIGRGSMGRPWLPGQVGHFLATGERR 257
Query: 378 PAWELASEYLDLVAQYPVRLQY--ARGHVFNMCHHLL----TLPENSDVRLLVGKTNHIK 431
P +A Y ++ + L + V N HL LP +++ R + + +
Sbjct: 258 PDPSIAELYEIVMDHFEALLVHYGTISGVRNARKHLAWYSRGLPGSAEFRAGINRLDDPD 317
Query: 432 DLRKAV 437
+R+A+
Sbjct: 318 AVRRAL 323
>gi|390457112|ref|ZP_10242640.1| tRNA-dihydrouridine synthase 1 [Paenibacillus peoriae KCTC 3763]
Length = 342
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 124/224 (55%), Gaps = 6/224 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ +LAPM +RL+++ +G+ L MVS I K +E+L ++PL +Q
Sbjct: 12 QVVLAPMAGVCNPAFRLIAKEFGTGLVCAEMVSDKAIIHGNKRTREMLFVDEREKPLSLQ 71
Query: 210 FCGNDSKNLTEAAKLA--EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G D ++L EAAK+ E + D IDIN+GCP + GA D + +VS++
Sbjct: 72 IFGGDRESLVEAAKVVDQETNADIIDINMGCPVPKVTKCDAGARWLLDPNKIYEMVSAVV 131
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
++V PV+ K+RI D V+ AR +ERAG Q ++VHGRT +Q + TG A+W+ I
Sbjct: 132 ESVSKPVTVKMRIGWDSEHIYAVDNARAVERAGGQAVSVHGRTREQ--LYTGHANWDIIK 189
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
V++A++IPVI NG++ D L T GVM G L NP
Sbjct: 190 EVKEAVSIPVIGNGDVASPEDARRMLDLTNCDGVMIGRGALGNP 233
>gi|427421063|ref|ZP_18911246.1| putative TIM-barrel protein, nifR3 family [Leptolyngbya sp. PCC
7375]
gi|425756940|gb|EKU97794.1| putative TIM-barrel protein, nifR3 family [Leptolyngbya sp. PCC
7375]
Length = 366
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 99/275 (36%), Positives = 142/275 (51%), Gaps = 23/275 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYG-SHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
R + +P+ ++L +R L RRY + YT MVSA + +KL +++ P++RP+ I
Sbjct: 43 RVLQSPLSGVTDLVFRRLVRRYAPQSMMYTEMVSAAELHHMRKL-PKVMEVDPDERPISI 101
Query: 209 QFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
Q L EAAK A + D IDIN+GCP + G+ L D ++ ++
Sbjct: 102 QLFDRRPDFLAEAAKKAVDQGADTIDINMGCPVNKITKNGGGSSLLRDPDTAARIIETVS 161
Query: 268 QAVQVPVSCKIRI--YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV +PV+ K RI +D V++AR LE AG Q+L +HGRT Q G N G A W I
Sbjct: 162 AAVSIPVTAKTRIGWSEDDINAVDFARRLEVAGAQMLTLHGRTRSQ-GYN-GTADWSWIA 219
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTR 377
V++AL IPVIANG+I + CL QT GVM + G L P L TG+ R
Sbjct: 220 KVKQALAIPVIANGDIFSVDAAIDCLEQTQADGVMCSRGTLGYPFLVGEIDHFLKTGERR 279
Query: 378 ------PAWELASEYLDLVAQYPVR--LQYARGHV 404
A E+L ++A Y + ++ AR H+
Sbjct: 280 LPPTVIERLRCAQEHLRMLADYKGKSGIRQARKHM 314
>gi|403670095|ref|ZP_10935261.1| tRNA-dihydrouridine synthase 1 [Kurthia sp. JC8E]
Length = 340
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 116/224 (51%), Gaps = 6/224 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R +LAPM +RL + +G+ L Y M+S + K +L + PL +Q
Sbjct: 18 RVVLAPMAGICNSAFRLTVKEFGAGLVYAEMISDKGIVKRNKKTMSMLYIDERENPLSLQ 77
Query: 210 FCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G D +NL EAAK + H D IDIN+GCP + GA D + +VS++
Sbjct: 78 IFGGDKENLVEAAKYVDQHTTADIIDINMGCPVNKIIKCEAGAKWLLDPNKIYEMVSAVT 137
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV PVSCK+RI D + VE A+ ERAG +A+HGRT Q+ G A+W+ +
Sbjct: 138 DAVSKPVSCKMRIGWDEDHLFAVENAQAAERAGASAIAMHGRTRVQQ--YEGKANWDILK 195
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
V++ +TIP IANG+++ D L TG GVM L NP
Sbjct: 196 EVKENITIPFIANGDVETPEDAHRILEHTGADGVMIGRAALGNP 239
>gi|162148051|ref|YP_001602512.1| tRNA-dihydrouridine synthase [Gluconacetobacter diazotrophicus PAl
5]
gi|161786628|emb|CAP56210.1| tRNA-dihydrouridine synthase [Gluconacetobacter diazotrophicus PAl
5]
Length = 356
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 104/343 (30%), Positives = 171/343 (49%), Gaps = 35/343 (10%)
Query: 128 MSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI 187
MS+ RP+ + + R +P ILAPM ++LP+R L+RR G+ L + M+++ +
Sbjct: 4 MSSEMLRPVDLGGGVVLR--TP-VILAPMSGVTDLPFRRLARRLGAGLVISEMIASWAMV 60
Query: 188 ADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCP-QMVAKR 245
+ + + +D P +Q G + + + +AA++A + D +DIN GCP + VA
Sbjct: 61 RENQATLRMAEVADDDGPNAVQLAGCEPEAMAQAARIAVDRGADMVDINFGCPVKKVAVG 120
Query: 246 GHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD---VNKTVEYARMLERAGCQLL 302
G+ L D L L+ ++ +AV VPV+ K+R+ D +N AR+ E+ G +++
Sbjct: 121 QQAGSALMRDEALAARLLDAVVRAVDVPVTLKMRMGWDHASLNAPA-LARIAEQTGIRMV 179
Query: 303 AVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362
VHGRT Q G A W + V+ A+++PVI NG+IQ + D LA +G GVM
Sbjct: 180 TVHGRTRQQ--FYNGTADWSFVRQVKDAVSLPVIVNGDIQTVDDARQALALSGADGVMIG 237
Query: 363 EGNLYNP--------ALFTGQTRPAWELASEYLDLVAQYPVRLQY---------ARGHVF 405
G P AL TG P +LA+E ++ Y + L + AR HV
Sbjct: 238 RGCYGRPWFLAQVAQALTTGDIVPDPDLATEKAIVLDHYDMMLSHFGAHPGLRLARKHV- 296
Query: 406 NMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFIDYH 448
+ LP+++ R + N + ++A+ M+ F D H
Sbjct: 297 --AWYSAGLPDSAGFRAAI---NRVDQAQEAIGMI-SAFYDRH 333
>gi|46202328|ref|ZP_00053405.2| COG0042: tRNA-dihydrouridine synthase [Magnetospirillum
magnetotacticum MS-1]
Length = 335
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 162/319 (50%), Gaps = 33/319 (10%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
ILAPM +++P R L +R G+ L + M+++ I + ++ T E+ P+ +Q
Sbjct: 20 VILAPMAGVTDMPNRRLVKRLGAGLVVSEMIASQAMIRQNRQTMQMAQHTAEEFPMSVQL 79
Query: 211 CGNDSKNLTEAAKLAEP-HCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G + K + EAAKL + IDIN+GCP + VA +G G+ L + L ++S++ +
Sbjct: 80 AGCEPKVMAEAAKLNQDLGVAIIDINMGCPVKKVALKGEAGSALMRNENLAARIMSAVVK 139
Query: 269 AVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV +PV+ K+R D+N AR+ E G +++ VHGRT +Q M TG A W I
Sbjct: 140 AVDIPVTLKMRTGWDMNSRNAPSLARVAEECGIRMVTVHGRTRNQ--MYTGQADWAFIGE 197
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP--------ALFTGQTRP 378
V++A++IPVI NG+++ + D L + GVM G P L TG+ P
Sbjct: 198 VKRAVSIPVIGNGDVESIDDAVRMLELSDADGVMIGRGTYGRPWLPGQVAHFLATGERLP 257
Query: 379 ------AWELASEYLD-LVAQYPVR--LQYARGHVFNMCHHLLTLPENSDVRLLVGKTNH 429
E+ +LD +++ Y ++ AR HV + LP +++ R + +TN
Sbjct: 258 DPSRAEQLEIMLGHLDAMLSHYGSEPGVRIARKHV---AWYSKGLPGSAEFRAEINRTND 314
Query: 430 IKDLRKAVDMLRERFIDYH 448
++R+ ID++
Sbjct: 315 PA-------IMRQSIIDFY 326
>gi|329766573|ref|ZP_08258116.1| nifR3 family TIM-barrel protein [Candidatus Nitrosoarchaeum limnia
SFB1]
gi|329136828|gb|EGG41121.1| nifR3 family TIM-barrel protein [Candidatus Nitrosoarchaeum limnia
SFB1]
Length = 321
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 148/321 (46%), Gaps = 42/321 (13%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIA-------DKKLRQEILMST 200
S R LAPM S+ RL ++ G+ L T S H IA +KK QE L +
Sbjct: 6 SSRAFLAPMAGVSDPVLRLQCKKMGAGLVVTEFTSIHSIIAKEHQLKENKKTIQEFLEYS 65
Query: 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
++RPL +Q G+D L +AAK+ EP D ID N+GCP + G L + L
Sbjct: 66 EKERPLSVQLFGSDLLALEKAAKIVEPFFDIIDYNMGCPAPHITQQMAGGALLQEINLTQ 125
Query: 261 NLVSSLRQAVQVPVSCKIR---------IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQ 311
+ S+L AV+ PV+ KIR +++D+ A + E G Q++ +H RTV Q
Sbjct: 126 QIFSTLVNAVKKPVTLKIRSGVTDASRYLFKDI------ATIAEDEGIQMITLHPRTVSQ 179
Query: 312 RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371
+G A W+ I +++ IP++ NG+I D + + QTG VM G + NP L
Sbjct: 180 G--YSGNADWKMIKELKEISNIPIVGNGDITTPEDAKNMIDQTGCDYVMIGRGAMGNPFL 237
Query: 372 F--------TGQTRPAWELAS------EYLDLVAQYPVRLQYARGHVFNMCHHLLTLPEN 417
F TG T + L EYL L QY ++ +G +
Sbjct: 238 FEQINDYLKTG-TYKQYSLKDKIDSFFEYLSLSTQYKIKFSNIKGQAMRFTKG---IKGG 293
Query: 418 SDVRLLVGKTNHIKDLRKAVD 438
S +R + + +I +L K ++
Sbjct: 294 SKIRPKISTSKNITELTKIMN 314
>gi|220908982|ref|YP_002484293.1| nitrogen regulator protein NIfR3 [Cyanothece sp. PCC 7425]
gi|219865593|gb|ACL45932.1| TIM-barrel protein, nifR3 family [Cyanothece sp. PCC 7425]
Length = 357
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 112/342 (32%), Positives = 175/342 (51%), Gaps = 37/342 (10%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYG-SHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 206
+ R + +P+ ++L +R L RRY + YT MV+A ++L +I+ P +RP+
Sbjct: 24 NSRVLQSPLSGVTDLVFRRLVRRYAPDSMMYTEMVNATGLHYVRQL-PKIMEVDPNERPI 82
Query: 207 IIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
IQ L EAA++A D +DIN+GCP + G+ L D +V S
Sbjct: 83 SIQLFDCRPDFLAEAAQMAVAEGADTVDINMGCPVNKITKNGGGSSLLRDPETAEAIVRS 142
Query: 266 LRQAVQVPVSCKIRI---YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
+ QAV VPV+ K RI +++N +E+A+ ++ AG Q++ VHGRT Q G N G A WE
Sbjct: 143 VVQAVNVPVTVKTRIGWTEKEIN-IIEFAQRMQDAGAQMITVHGRTRAQ-GYN-GPAKWE 199
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TG 374
I V++ALTIPVIANG+I + CL QTG GVM + G + P L TG
Sbjct: 200 WIRRVKEALTIPVIANGDIFSVEAAVNCLEQTGADGVMCSRGTMGYPFLVGEVDHFLKTG 259
Query: 375 QTRPA------WELASEYLDLVAQYPVR--LQYARGHVFNMCHHLLTLPENSDVRLLVGK 426
+ +PA + A E+L + +Y ++ AR H M + P +++R G
Sbjct: 260 EHKPAPTVIERLQCAREHLQALWEYKGDRGVRQARKH---MTWYAKGFPGAAELR---GA 313
Query: 427 TNHIKDLRKAVDMLRERFIDYHEGRKLWPPPNYPM--SSNHH 466
++++++ +D++ D K W NY + SS+ H
Sbjct: 314 LCQLENVQQGLDLI----TDTIHQLKDWDGSNYHLQTSSDKH 351
>gi|386812916|ref|ZP_10100141.1| tRNA-dihydrouridine synthase [planctomycete KSU-1]
gi|386405186|dbj|GAB63022.1| tRNA-dihydrouridine synthase [planctomycete KSU-1]
Length = 322
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 150/285 (52%), Gaps = 21/285 (7%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
IL+PM S++P+RL+ R +G + +VS + + ++L P +RP+ Q
Sbjct: 16 LILSPMAGFSDIPYRLICREFGMAMSCAEVVSMDGVLWKNRKTFQLLDFRPVERPVSFQI 75
Query: 211 CGNDSKNLTEAAKLAEPHC-DGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
GND + EA+++ E D ID+N+GC +A +G GA L + + + L +
Sbjct: 76 LGNDEDKIAEASRMMEALGPDVIDVNMGCSVSDIAGKGA-GAGLLKNPQKIRKIFQKLTK 134
Query: 269 AVQVPVSCKIRIYQDVNKTVEY---ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
++VPV+ KIR+ D +K+ Y AR+LE G L+AVHGRT Q G A W+ I
Sbjct: 135 VLRVPVTGKIRLGWD-DKSRNYLDVARILEENGAALIAVHGRTRSQ--FFRGKADWDAIA 191
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRP------A 379
V++A+ IPVI NG+++C+AD+E TG GVM + +P +F + R
Sbjct: 192 EVKQAVKIPVIGNGDVRCVADIERMKQHTGCDGVMIGRAAIGHPWIFQRRDRSQITYREK 251
Query: 380 WELASEYLDLVAQY---PVRLQYARGHVFNMCHHLLTLPENSDVR 421
EL ++ L+ Y + + R H+ +++++P +++R
Sbjct: 252 IELIRRHISLMQAYYGKEIGIILFRKHIVK---YIMSMPMATELR 293
>gi|209542669|ref|YP_002274898.1| nifR3 family TIM-barrel protein [Gluconacetobacter diazotrophicus
PAl 5]
gi|209530346|gb|ACI50283.1| TIM-barrel protein, nifR3 family [Gluconacetobacter diazotrophicus
PAl 5]
Length = 353
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 104/343 (30%), Positives = 171/343 (49%), Gaps = 35/343 (10%)
Query: 128 MSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI 187
MS+ RP+ + + R +P ILAPM ++LP+R L+RR G+ L + M+++ +
Sbjct: 1 MSSEMLRPVDLGGGVVLR--TP-VILAPMSGVTDLPFRRLARRLGAGLVISEMIASWAMV 57
Query: 188 ADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCP-QMVAKR 245
+ + + +D P +Q G + + + +AA++A + D +DIN GCP + VA
Sbjct: 58 RENQATLRMAEVADDDGPNAVQLAGCEPEAMAQAARIAVDRGADMVDINFGCPVKKVAVG 117
Query: 246 GHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD---VNKTVEYARMLERAGCQLL 302
G+ L D L L+ ++ +AV VPV+ K+R+ D +N AR+ E+ G +++
Sbjct: 118 QQAGSALMRDEALAARLLDAVVRAVDVPVTLKMRMGWDHASLNAPA-LARIAEQTGIRMV 176
Query: 303 AVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362
VHGRT Q G A W + V+ A+++PVI NG+IQ + D LA +G GVM
Sbjct: 177 TVHGRTRQQ--FYNGTADWSFVRQVKDAVSLPVIVNGDIQTVDDARQALALSGADGVMIG 234
Query: 363 EGNLYNP--------ALFTGQTRPAWELASEYLDLVAQYPVRLQY---------ARGHVF 405
G P AL TG P +LA+E ++ Y + L + AR HV
Sbjct: 235 RGCYGRPWFLAQVAQALTTGDIVPDPDLATEKAIVLDHYDMMLSHFGAHPGLRLARKHV- 293
Query: 406 NMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFIDYH 448
+ LP+++ R + N + ++A+ M+ F D H
Sbjct: 294 --AWYSAGLPDSAGFRAAI---NRVDQAQEAIGMI-SAFYDRH 330
>gi|440226575|ref|YP_007333666.1| putative tRNA-dihydrouridine synthase [Rhizobium tropici CIAT 899]
gi|440038086|gb|AGB71120.1| putative tRNA-dihydrouridine synthase [Rhizobium tropici CIAT 899]
Length = 341
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 144/268 (53%), Gaps = 16/268 (5%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R ILAPM ++LP+R L+ RYG+ L T MV++ + + D L S +P ++Q
Sbjct: 27 RVILAPMSGVTDLPFRQLALRYGAGLVVTEMVASRELVQDTAESWARLRSAGL-KPHMVQ 85
Query: 210 FCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G ++ + EAAK+A + D IDIN+GCP G+ G+ L D L+ + +
Sbjct: 86 LAGREALWMAEAAKIATDNGADIIDINMGCPAKKVIGGYSGSALMRDPDHALTLIEATVR 145
Query: 269 AVQVPVSCKIRIYQDVNKTVE--YARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV +PV+ K+R+ D N AR E AG QL+ +HGRT Q G A W+ I A
Sbjct: 146 AVNIPVTLKMRLGWDENSINAPYIARRAEEAGIQLVTIHGRTRMQ--FYEGRADWDAIRA 203
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA---EGNLYNPALFTGQTRPAW--- 380
VR A++IP++ANG+++ D + L ++G VM +G ++ + G P+
Sbjct: 204 VRDAVSIPLVANGDVETAEDAQEILRRSGADAVMIGRGCQGRPWHAGVLAGHREPSRQEI 263
Query: 381 -ELASEYLDLVAQY---PVRLQYARGHV 404
E+A E+ ++ ++ V +++AR H+
Sbjct: 264 VEIALEHYRMMLEFYGETVGIRHARKHL 291
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 60 PKDCHSSTARSDAWTQLGS----PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQ 115
PKD H +++ +GS R ILAPM ++LP+R L+ RYG+ L T MV++ +
Sbjct: 3 PKDNHLLSSKLADPFFIGSVSIRNRVILAPMSGVTDLPFRQLALRYGAGLVVTEMVASRE 62
Query: 116 FIAD 119
+ D
Sbjct: 63 LVQD 66
>gi|317472901|ref|ZP_07932207.1| dihydrouridine synthase [Anaerostipes sp. 3_2_56FAA]
gi|316899621|gb|EFV21629.1| dihydrouridine synthase [Anaerostipes sp. 3_2_56FAA]
Length = 332
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 124/226 (54%), Gaps = 7/226 (3%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
F+LAPM ++LP+RLL + G+ L YT MVSA + +L +RP+ Q
Sbjct: 21 FLLAPMAGVTDLPYRLLCKEMGAGLLYTEMVSAKGMYYNSPNTGPLLAKEEWERPIAAQI 80
Query: 211 CGNDSKNLTE-AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G++ + + + A ++ E D IDIN+GCP G+ L D L ++ ++
Sbjct: 81 FGSEPELMADMAVRVQEMGFDLIDINMGCPVPKIVNNGDGSALMKDPVLAGKIIKAMADR 140
Query: 270 VQVPVSCKIRIYQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
+ VPV+ KIR D VN VE AR+ E++G +AVHGRT +Q +G A W+ I
Sbjct: 141 LSVPVTVKIRKGFDDEHVN-AVEMARIAEQSGAAAVAVHGRTREQ--YYSGKADWDIIRQ 197
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
V++A++IPVI NG+I D EA L +TG G M A G NP +F
Sbjct: 198 VKEAVSIPVIGNGDINSPLDAEAMLRETGCDGFMIARGAKGNPWIF 243
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 101/236 (42%), Gaps = 44/236 (18%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
F+LAPM ++LP+RLL + G+ L YT MVSA + +L +RP+ Q
Sbjct: 21 FLLAPMAGVTDLPYRLLCKEMGAGLLYTEMVSAKGMYYNSPNTGPLLAKEEWERPIAAQ- 79
Query: 141 TIFPRLGSPRFILAPM-VDASELPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQE 195
IF GS ++A M V E+ + L+ G C P + + D L +
Sbjct: 80 -IF---GSEPELMADMAVRVQEMGFDLIDINMG---CPVPKIVNNGDGSALMKDPVLAGK 132
Query: 196 ILMSTPEDR---PLIIQF-CGNDSK--NLTEAAKLAEPHCDGIDINIGCPQMVAKRG--- 246
I+ + DR P+ ++ G D + N E A++AE VA G
Sbjct: 133 IIKAMA-DRLSVPVTVKIRKGFDDEHVNAVEMARIAEQS---------GAAAVAVHGRTR 182
Query: 247 --HYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQ 300
+Y + DW +++ +++AV +PV D+N ++ ML GC
Sbjct: 183 EQYYSG--KADW----DIIRQVKEAVSIPVIGN----GDINSPLDAEAMLRETGCD 228
>gi|302390600|ref|YP_003826421.1| tRNA-U20-dihydrouridine synthase [Thermosediminibacter oceani DSM
16646]
gi|302201228|gb|ADL08798.1| tRNA-U20-dihydrouridine synthase [Thermosediminibacter oceani DSM
16646]
Length = 340
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/320 (29%), Positives = 153/320 (47%), Gaps = 25/320 (7%)
Query: 139 QRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM 198
+ +FP L LAPM ++LP+R + + G+ + T MVS + +L
Sbjct: 11 NQGVFPFLDFYPVFLAPMAGITDLPFRTICKELGADVVITEMVSTRGIYYNDSKTAALLT 70
Query: 199 STPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
P + P+ +Q GND + A K E D I+IN+GCP + G L D
Sbjct: 71 IDPCEHPIGVQLFGNDPEFFAHAVKKIEDIPFDFININMGCPTPKIVKNGDGCALMKDPE 130
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIY--QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
L ++ + +A PV+ KIR +D VE++RM + +G ++ +HGRT +Q
Sbjct: 131 LAGKIIEATAKASDRPVTVKIRKGWDEDSANAVEFSRMAQESGAAMVIIHGRTREQ--FY 188
Query: 316 TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--- 372
+G A W+ I V++A++IPVI NG++ D L TG GVM G L NP +F
Sbjct: 189 SGKADWDIIRRVKEAVSIPVIGNGDVFSAQDAAKMLEYTGCDGVMVGRGALGNPFIFREI 248
Query: 373 -----TGQTRP------AWELASEYLDLVAQY---PVRLQYARGHVFNMCHHLLTLPENS 418
TG+ P E+ ++LD+ ++ V + R H+ +L LP +S
Sbjct: 249 KHFLKTGEKLPPPALEEKKEVIFKHLDMALEFHGERVGILEMRKHI---AWYLKGLPHSS 305
Query: 419 DVRLLVGKTNHIKDLRKAVD 438
V+ + ++ H +++ +D
Sbjct: 306 AVKQKIQQSKHADEIKYLLD 325
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 101/232 (43%), Gaps = 30/232 (12%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
LAPM ++LP+R + + G+ + T MVS + +L P + P+ +Q
Sbjct: 24 FLAPMAGITDLPFRTICKELGADVVITEMVSTRGIYYNDSKTAALLTIDPCEHPIGVQ-- 81
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAH----QFIADKKLRQEIL 197
+F P F + ++P+ ++ G C TP + + + D +L +I+
Sbjct: 82 LFGN--DPEFFAHAVKKIEDIPFDFININMG---CPTPKIVKNGDGCALMKDPELAGKII 136
Query: 198 MSTPE--DRPLIIQF---CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 252
+T + DRP+ ++ DS N E +++A+ + I G + G
Sbjct: 137 EATAKASDRPVTVKIRKGWDEDSANAVEFSRMAQESGAAMVIIHGRTREQFYSG------ 190
Query: 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
+ DW +++ +++AV +PV DV + A+MLE GC + V
Sbjct: 191 KADW----DIIRRVKEAVSIPVIGN----GDVFSAQDAAKMLEYTGCDGVMV 234
>gi|373123147|ref|ZP_09536996.1| nifR3 family putative TIM-barrel protein [Erysipelotrichaceae
bacterium 21_3]
gi|422326238|ref|ZP_16407266.1| nifR3 family putative TIM-barrel protein [Erysipelotrichaceae
bacterium 6_1_45]
gi|371661277|gb|EHO26507.1| nifR3 family putative TIM-barrel protein [Erysipelotrichaceae
bacterium 21_3]
gi|371666570|gb|EHO31714.1| nifR3 family putative TIM-barrel protein [Erysipelotrichaceae
bacterium 6_1_45]
Length = 338
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 122/227 (53%), Gaps = 6/227 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ ++APM S +R++ + +G+ L YT MVS D + + ++ PL +Q
Sbjct: 16 QVVIAPMAGISNPAFRVICKEFGAGLIYTEMVSDKALYYDNEKTVGMTDVEEQEHPLAMQ 75
Query: 210 FCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G+D + + AAK + CD IDIN+GCP + G+ L D + ++
Sbjct: 76 IFGHDIETMVYAAKFLDEKTDCDIIDINMGCPVTKIVKSFAGSALMKDVDHAVEMSRAVV 135
Query: 268 QAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
Q+V+ PV+ K+RI D+++ +E AR LE G Q LAVHGRT Q M G A W +I
Sbjct: 136 QSVKKPVTVKMRIGWDMDQITCLELARGLESVGVQALAVHGRTRKQ--MYEGCADWSYIK 193
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
V++A++IPV+ NG+++ D E L +TG VM G L +P L
Sbjct: 194 KVKEAVSIPVMGNGDVRSGEDAERMLKETGCDAVMIGRGVLGDPWLI 240
>gi|309778095|ref|ZP_07673033.1| zinc-binding TIM-barrel protein, nifR3 family [Erysipelotrichaceae
bacterium 3_1_53]
gi|308914154|gb|EFP59956.1| zinc-binding TIM-barrel protein, nifR3 family [Erysipelotrichaceae
bacterium 3_1_53]
Length = 338
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 122/227 (53%), Gaps = 6/227 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R ++APM S +R++ + +G+ L YT MVS D + + ++ PL +Q
Sbjct: 16 RVVIAPMAGISNPAFRVICKEFGAGLIYTEMVSDKALYYDNEKTVGMTDVEEQEHPLTMQ 75
Query: 210 FCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G+D + + AAK + CD IDIN+GCP + G+ L D + ++
Sbjct: 76 IFGHDIETMVYAAKFLDEKTACDIIDINMGCPVTKIVKSFAGSALMKDVDHAVEMSRAVV 135
Query: 268 QAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
Q+V+ PV+ K+RI D+++ VE A+ LE G Q LAVHGRT Q M G A W +I
Sbjct: 136 QSVKKPVTVKMRIGWDMDQITCVELAKGLEAVGVQALAVHGRTKKQ--MYEGSADWSYIR 193
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
V++A++IPV+ NG+++ D + L +TG VM G L +P L
Sbjct: 194 RVKEAVSIPVMGNGDVRSGEDAQRMLEETGCDAVMIGRGVLGDPWLI 240
>gi|435852523|ref|YP_007314109.1| putative TIM-barrel protein, nifR3 family [Methanomethylovorans
hollandica DSM 15978]
gi|433663153|gb|AGB50579.1| putative TIM-barrel protein, nifR3 family [Methanomethylovorans
hollandica DSM 15978]
Length = 329
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 4/225 (1%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
LAPM D + +R+L +++G+ L Y+ M+SA + +S+ E++P IQ
Sbjct: 12 LFLAPMADVTNPAFRMLCKKHGAALTYSEMISADAVLHGNIRTANRGLSSEEEKPFAIQL 71
Query: 211 CGNDSKNLTEAAKLAEPHC--DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
GN + + A+ + E D ID+N GCP V + G+ L D + +VS++
Sbjct: 72 FGNSAATIVNASSIIEERFCPDIIDLNFGCPAKVLVKDGSGSALLDFPEKIREIVSAVSG 131
Query: 269 AVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
V PV+ KIR+ D+ KT++ AR++E AG + VHGRT Q+ G A E+ ++
Sbjct: 132 KVDAPVTAKIRVLHDMEKTLDIARVIEEAGAGAITVHGRTQAQQ--YAGKAEHEYARKIK 189
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
L+IPVIANG+I + L TG +M ++ NP +FT
Sbjct: 190 NELSIPVIANGDISNGHSAKHVLEYTGCDALMVGRASMGNPHIFT 234
>gi|410670972|ref|YP_006923343.1| dihydrouridine synthase like protein [Methanolobus psychrophilus
R15]
gi|409170100|gb|AFV23975.1| dihydrouridine synthase like protein [Methanolobus psychrophilus
R15]
Length = 317
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 128/237 (54%), Gaps = 8/237 (3%)
Query: 138 IQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL 197
I++ FP LAPM + + +P+RL+ R YG+ + Y+ M+S+ I +
Sbjct: 3 IEKVQFP----GNIFLAPMANVTNIPFRLMCRNYGASMAYSEMISSDAVIYESSKAFSRG 58
Query: 198 MSTPEDRPLIIQFCGNDSKNLTEAA-KLAEPHC-DGIDINIGCPQMVAKRGHYGAYLQDD 255
+S +++P IQ GN ++ AA K+ E + D ID+N GCP + + G+ L
Sbjct: 59 LSCKDEKPFGIQIFGNSPDIISRAALKIEETYQPDIIDVNFGCPAYLLVKDGSGSALLQS 118
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
L+ ++V L + V PV+ KIR+ +DV +TV+ A ++E+AG + VHGRT Q+
Sbjct: 119 PDLIYSIVKELCETVSTPVTAKIRVLEDVERTVQIAGLIEKAGACAITVHGRT--QQQHY 176
Query: 316 TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
G A+ E+ ++ +TIPVIANG+I + L TG G+M + NP LF
Sbjct: 177 AGKANHEYAKRIKCEVTIPVIANGDIIDEISAKDTLEYTGCDGIMIGRAAMGNPFLF 233
Score = 43.5 bits (101), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
LAPM + + +P+RL+ R YG+ + Y+ M+S+ I + +S +++P IQ
Sbjct: 12 IFLAPMANVTNIPFRLMCRNYGASMAYSEMISSDAVIYESSKAFSRGLSCKDEKPFGIQ 70
>gi|392959785|ref|ZP_10325264.1| TIM-barrel protein, nifR3 family [Pelosinus fermentans DSM 17108]
gi|421053426|ref|ZP_15516403.1| TIM-barrel protein, nifR3 family [Pelosinus fermentans B4]
gi|421058057|ref|ZP_15520794.1| TIM-barrel protein, nifR3 family [Pelosinus fermentans B3]
gi|421064728|ref|ZP_15526574.1| TIM-barrel protein, nifR3 family [Pelosinus fermentans A12]
gi|421071215|ref|ZP_15532337.1| TIM-barrel protein, nifR3 family [Pelosinus fermentans A11]
gi|392442027|gb|EIW19636.1| TIM-barrel protein, nifR3 family [Pelosinus fermentans B4]
gi|392447374|gb|EIW24621.1| TIM-barrel protein, nifR3 family [Pelosinus fermentans A11]
gi|392455936|gb|EIW32703.1| TIM-barrel protein, nifR3 family [Pelosinus fermentans DSM 17108]
gi|392460502|gb|EIW36796.1| TIM-barrel protein, nifR3 family [Pelosinus fermentans A12]
gi|392461598|gb|EIW37775.1| TIM-barrel protein, nifR3 family [Pelosinus fermentans B3]
Length = 317
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 127/231 (54%), Gaps = 6/231 (2%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
+L +P ILAPM ++LP+RLL++ G L Y+ MVS + + +L +R
Sbjct: 7 KLDNP-VILAPMAGVTDLPFRLLAKEMGCGLVYSEMVSDKGLLYENCQTLHMLQIDERER 65
Query: 205 PLIIQFCGNDSKNLTEAA-KLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
P+ +Q G+D ++ +AA + + D IDIN+GCP + G L L+ ++
Sbjct: 66 PVAMQIFGSDPDSMAKAAIHVEKSGADIIDINMGCPTPKITKNGSGCALMCQPDLVYQIM 125
Query: 264 SSLRQAVQVPVSCKIRI--YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+S+ +AV VPV+ KIR +D VE A++ E+AG +AVHGRT +Q TG A W
Sbjct: 126 ASVVEAVHVPVTVKIRKGWSEDSVNAVEIAKLAEKAGIAAIAVHGRTREQ--FYTGEADW 183
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
I V++++ IPVI NG+I+ D + L QTG +M G NP +F
Sbjct: 184 SIIRQVKESVVIPVIGNGDIRTPYDGKKMLEQTGCDAIMVGRGAQGNPWIF 234
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 105/243 (43%), Gaps = 34/243 (13%)
Query: 75 QLGSPRF----ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
Q+G+ + ILAPM ++LP+RLL++ G L Y+ MVS + + +L
Sbjct: 2 QIGAIKLDNPVILAPMAGVTDLPFRLLAKEMGCGLVYSEMVSDKGLLYENCQTLHMLQID 61
Query: 131 PEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAH----QF 186
+RP+ +Q IF P + + + ++ G C TP ++ +
Sbjct: 62 ERERPVAMQ--IFGS--DPDSMAKAAIHVEKSGADIIDINMG---CPTPKITKNGSGCAL 114
Query: 187 IADKKLRQEILMSTPE--DRPLIIQF---CGNDSKNLTEAAKLAEPHCDGIDINIGCPQM 241
+ L +I+ S E P+ ++ DS N E AKLAE GI I
Sbjct: 115 MCQPDLVYQIMASVVEAVHVPVTVKIRKGWSEDSVNAVEIAKLAEKA--GI-AAIAVHGR 171
Query: 242 VAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQL 301
++ + G + DW +++ ++++V +PV D+ + +MLE+ GC
Sbjct: 172 TREQFYTG---EADW----SIIRQVKESVVIPVIGN----GDIRTPYDGKKMLEQTGCDA 220
Query: 302 LAV 304
+ V
Sbjct: 221 IMV 223
>gi|344204808|ref|YP_004789950.1| putative tRNA dihydrouridine synthetase [Mycoplasma putrefaciens
KS1]
gi|343956731|gb|AEM68446.1| putative tRNA dihydrouridine synthetase [Mycoplasma putrefaciens
KS1]
Length = 324
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 154/312 (49%), Gaps = 21/312 (6%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ + PM S P+R++S+++G+ L Y MVS + K +L ++ P+ +Q
Sbjct: 11 KVVQGPMAGVSNEPFRVISKQHGASLVYAEMVSVAGMAHENKKTFSMLQVNKDEHPISMQ 70
Query: 210 FCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSL 266
GND A K + H CD ID+N+GCP VA R G+ L L+ +V ++
Sbjct: 71 IFGNDVDEFINATKWIDKHVDCDIIDLNLGCPAPKVALRSASGSALLKTPELIYEIVRAV 130
Query: 267 RQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
PV+ KIR+ D + VE AR++E+AG +AVHGRT + TG A WE I
Sbjct: 131 VANTNKPVTAKIRLGWDKDSVNAVEVARLIEKAGASAIAVHGRT--RSDFYTGRADWEKI 188
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQ- 375
V+ A+ IPVI NG+I +A L TG VM + NP +F TGQ
Sbjct: 189 KEVKDAVKIPVIGNGDIVDGPSAKAMLDLTGCDAVMVSRSCQGNPWIFEQINYFLETGQE 248
Query: 376 -TRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLL----TLPENSDVRLLVGKTNHI 430
++P ++ S+ + A+ + L+ + + HL+ L + ++ L K N I
Sbjct: 249 LSKPNFKQWSKTVLQHAEMFIDLKDEQFAMREFRKHLVWYLDVLDKKPNLNSLKEKANKI 308
Query: 431 KDLRKAVDMLRE 442
+ L+ ++++E
Sbjct: 309 QTLQDVKEIIKE 320
>gi|190891640|ref|YP_001978182.1| tRNA-dihydrouridine synthase [Rhizobium etli CIAT 652]
gi|190696919|gb|ACE91004.1| tRNA-dihydrouridine synthase protein [Rhizobium etli CIAT 652]
Length = 339
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 152/291 (52%), Gaps = 21/291 (7%)
Query: 132 EDRPLIIQRTIFP-RLGS----PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQF 186
+D LI + P R+GS R +LAPM +++P+R L+ R+G+ L T MV++ +
Sbjct: 5 KDNHLISKDLAAPFRIGSVSVRNRVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASREL 64
Query: 187 IADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKR 245
+ D L + RP ++Q G ++ + EAA++A H D IDIN+GCP
Sbjct: 65 VNDTAESWSRLKAAGF-RPHMVQLAGREAHWMAEAARIAADHGADIIDINMGCPAKKVIG 123
Query: 246 GHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLA 303
G+ G+ L D L+ + +AV +PV+ K+R+ D N + AR E AG QL+
Sbjct: 124 GYSGSALMRDPDHALGLIEATVKAVDIPVTLKMRLGWDENSINAPDIARRAEAAGIQLVT 183
Query: 304 VHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA- 362
+HGRT Q G A W+ I AVR ++IP+IANG+++ D + L ++G VM
Sbjct: 184 IHGRTRMQ--FYDGRADWDAIRAVRDVISIPLIANGDVETAEDAQEILRRSGADAVMIGR 241
Query: 363 --EGNLYNPALFTGQTRPAWE----LASEYLDLVAQY---PVRLQYARGHV 404
+G ++ + G P E +A E+ ++ + V +++AR H+
Sbjct: 242 GCQGRPWHAGVLAGAAEPQREDIADIAVEHYRMMLDFYGEAVAIRHARKHL 292
>gi|313894573|ref|ZP_07828136.1| TIM-barrel protein, nifR3 family [Veillonella sp. oral taxon 158
str. F0412]
gi|313440763|gb|EFR59192.1| TIM-barrel protein, nifR3 family [Veillonella sp. oral taxon 158
str. F0412]
Length = 328
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 156/308 (50%), Gaps = 19/308 (6%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM S++ +RLL++ +G+ L T MVSA + E+L +RP+ +Q
Sbjct: 18 ILAPMAGVSDIAYRLLAKEHGAALVCTEMVSAMGIKYKNERTHELLRLEEVERPVSMQIF 77
Query: 212 GNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G++ + + A++ A+ D +DIN+GCP G+ L + L + + +AV
Sbjct: 78 GSNPEAIALGAQVVADAGADIVDINMGCPVKKVVTSGDGSALMKNPDLAARVAEAAVKAV 137
Query: 271 QVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
VPV+ K+RI D + V++A+ +E G +AVHGRT +Q M +G A W +I AV+
Sbjct: 138 NVPVTVKMRIGWDSDSINVVDFAKRVESTGVAAIAVHGRTKEQ--MYSGHADWSYIKAVK 195
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRPA- 379
+A+++PVI NG+I D + L +TG VM G NP +F TG+ PA
Sbjct: 196 EAVSVPVIGNGDIVEPEDAKRMLDETGCDAVMVGRGAQGNPWIFGRIHHYLATGEILPAP 255
Query: 380 -----WELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLR 434
++ ++ DL+ QY + + ++ LPE+S R V + + +
Sbjct: 256 TDIERLDMLLKHFDLLCQYKGESMAVKEIRTHAGWYMKGLPESSYWRNRVNTIHTVANFH 315
Query: 435 KAVDMLRE 442
++ R+
Sbjct: 316 NELESYRK 323
Score = 45.1 bits (105), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 108/245 (44%), Gaps = 38/245 (15%)
Query: 75 QLGSPRF----ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
Q+GS + ILAPM S++ +RLL++ +G+ L T MVSA + E+L
Sbjct: 7 QIGSVKIDGQAILAPMAGVSDIAYRLLAKEHGAALVCTEMVSAMGIKYKNERTHELLRLE 66
Query: 131 PEDRPLIIQRTIFPR------LGSPRFILAPMVDASELPW-----RLLSRRYGSHLCYTP 179
+RP+ +Q IF LG+ + + D ++ ++++ GS L P
Sbjct: 67 EVERPVSMQ--IFGSNPEAIALGA-QVVADAGADIVDINMGCPVKKVVTSGDGSALMKNP 123
Query: 180 MVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCP 239
++A +A+ ++ ++ P + I + +DS N+ + AK E G
Sbjct: 124 DLAAR--VAEAAVKA---VNVPVTVKMRIGW-DSDSINVVDFAKRVESTGVAAIAVHGRT 177
Query: 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC 299
+ GH DW + + ++++AV VPV D+ + + RML+ GC
Sbjct: 178 KEQMYSGHA------DW----SYIKAVKEAVSVPVIGN----GDIVEPEDAKRMLDETGC 223
Query: 300 QLLAV 304
+ V
Sbjct: 224 DAVMV 228
>gi|417860134|ref|ZP_12505190.1| nitrogen regulation protein [Agrobacterium tumefaciens F2]
gi|338823198|gb|EGP57166.1| nitrogen regulation protein [Agrobacterium tumefaciens F2]
Length = 308
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 160/310 (51%), Gaps = 32/310 (10%)
Query: 156 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK-----KLRQEILMSTPEDRPLIIQF 210
M ++LP+R L+ RYG+ L T MV++ + +A++ +L+ ++ P ++Q
Sbjct: 1 MSGVTDLPFRQLAWRYGAGLVVTEMVASRELVANRGESWARLKNAGMV------PHMVQL 54
Query: 211 CGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G ++ + EAAK+A + GI DIN+GCP G+ G+ L D +L+ + A
Sbjct: 55 AGREAHFMAEAAKIAADNGAGIIDINMGCPAKKVTGGYSGSALMRDPDHALSLIEATVDA 114
Query: 270 VQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
V VPV+ K+R+ D N E AR E AG QL+ +HGRT Q G A W I AV
Sbjct: 115 VDVPVTLKMRLGWDENTINAPEIARRAEEAGVQLITIHGRTRMQ--FYEGRADWNAIRAV 172
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMT---AEGNLYNPALFTGQTRP----AW 380
R+ ++IP+IANG+++ D L ++G VM A+G + PA+ G P
Sbjct: 173 REVISIPLIANGDVETAEDAREILRRSGADAVMVGRGAQGQPWLPAVLAGHAAPHRAEIA 232
Query: 381 ELASEYLDLVAQYPVR---LQYARGHV-FNMCHHLLTLPENSDVRLLVGKTNHIKDLRKA 436
++A E+ D++ ++ R L++AR H+ + + L + V+++ +D +
Sbjct: 233 DIAVEHYDMMLEFYGREAGLRHARKHLGWYLDRFALEIATPDKVKIMTS-----RDTGEV 287
Query: 437 VDMLRERFID 446
D+LR D
Sbjct: 288 ADLLRSALCD 297
>gi|424914099|ref|ZP_18337463.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. trifolii WSM597]
gi|392850275|gb|EJB02796.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. trifolii WSM597]
Length = 338
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 150/292 (51%), Gaps = 21/292 (7%)
Query: 131 PEDRPLIIQRTIFP-RLG----SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQ 185
P+D LI + P R+G R +LAPM +++P+R L+ R+G+ L T MV++ +
Sbjct: 3 PKDNHLISKDLAAPFRIGPVSVRNRIVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRE 62
Query: 186 FIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAK 244
+ D L + RP ++Q G ++ + EAAK+A H D IDIN+GCP
Sbjct: 63 LVNDTAESWSRLRAAGF-RPHMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVI 121
Query: 245 RGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLL 302
G+ G+ L D L+ + +AV +PV+ K+R+ D N E AR E AG QL+
Sbjct: 122 GGYSGSALMRDPDHALGLIEATVKAVDIPVTLKMRLGWDENSINAPEIARRAEAAGIQLV 181
Query: 303 AVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362
+HGRT Q G A W+ I VR ++IP+IANG+++ D + L ++G VM
Sbjct: 182 TIHGRTRMQ--FYEGRADWDAIRPVRDVISIPLIANGDVETAEDAQEILRRSGADAVMIG 239
Query: 363 ---EGNLYNPALFTGQTRPAWE----LASEYLDLVAQY---PVRLQYARGHV 404
+G ++ G P E +A E+ ++ + V +++AR H+
Sbjct: 240 RGCQGRPWHAGALAGAAEPRREDIADIAVEHYRMMLDFYGEAVAIRHARKHL 291
>gi|392377165|ref|YP_004984324.1| tRNA-dihydrouridine synthase B [Azospirillum brasilense Sp245]
gi|356878646|emb|CCC99532.1| tRNA-dihydrouridine synthase B [Azospirillum brasilense Sp245]
Length = 328
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 116/221 (52%), Gaps = 5/221 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM ++LP+R L ++ G L + MV++ I + + ++ PE P+ +Q
Sbjct: 15 ILAPMSGVTDLPFRRLVKQSGCGLVVSEMVASQAMIRENRQTLRMVECEPEQFPMAVQLA 74
Query: 212 GNDSKNLTEAAKLAEPHCDG-IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G + + EAAKL E IDIN GCP GH G+ L D L ++ + +AV
Sbjct: 75 GCEPDVMAEAAKLNEDRGAAIIDINFGCPVKKVVNGHAGSSLMRDEALAARILEATAKAV 134
Query: 271 QVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+PV+ K+R D N AR+ E G +L+ VHGRT +Q G A W I +V+
Sbjct: 135 SIPVTLKMRKGWDDNSLNAPRLARIAEECGIKLVTVHGRTREQ--FYNGTADWSFIRSVK 192
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
+A++IPV+ NG+I V+ LA++G GVM G P
Sbjct: 193 EAVSIPVVVNGDITSFDAVDRALAESGADGVMIGRGAYGRP 233
>gi|331091971|ref|ZP_08340803.1| hypothetical protein HMPREF9477_01446 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402870|gb|EGG82437.1| hypothetical protein HMPREF9477_01446 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 321
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 125/228 (54%), Gaps = 7/228 (3%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R+ILAPM ++LP+RLL + G+ L MVSA K Q +L PE+ P+ +Q
Sbjct: 13 RYILAPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAIQYKNKNTQALLKIHPEECPVSLQ 72
Query: 210 FCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G+D ++E AK E I DIN+GCP + K G A +Q+ L+ +V +
Sbjct: 73 LFGSDPDVMSEVAKSIEELPFAILDINMGCPVPKIVKNGEGSALMQNP-KLVEQIVKKVS 131
Query: 268 QAVQVPVSCKIR--IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
A+Q PV+ KIR + VE A+++E +G +AVHGRT +Q +G A W+ I
Sbjct: 132 GAIQKPVTVKIRKGFNDESVNAVEIAKIIEASGGAAVAVHGRTREQ--YYSGKADWDIIR 189
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
V++A++IPVIANG++ C D QT G+M G NP +F+
Sbjct: 190 QVKEAVSIPVIANGDVTCGQDAIEIQKQTNCDGIMIGRGAQGNPWIFS 237
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 95/206 (46%), Gaps = 30/206 (14%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
R+ILAPM ++LP+RLL + G+ L MVSA K Q +L PE+ P+ +Q
Sbjct: 13 RYILAPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAIQYKNKNTQALLKIHPEECPVSLQ 72
Query: 140 RTIFPRLGSPRFILAPMVDA-SELPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQ 194
GS +++ + + ELP+ +L G C P + + + KL +
Sbjct: 73 -----LFGSDPDVMSEVAKSIEELPFAILDINMG---CPVPKIVKNGEGSALMQNPKLVE 124
Query: 195 EIL--MSTPEDRPLIIQF---CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 249
+I+ +S +P+ ++ ++S N E AK+ I+ + G V R
Sbjct: 125 QIVKKVSGAIQKPVTVKIRKGFNDESVNAVEIAKI-------IEASGGAAVAVHGRTREQ 177
Query: 250 AYL-QDDWPLLTNLVSSLRQAVQVPV 274
Y + DW +++ +++AV +PV
Sbjct: 178 YYSGKADW----DIIRQVKEAVSIPV 199
>gi|256838548|ref|ZP_05544058.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|298374169|ref|ZP_06984127.1| hypothetical protein HMPREF0104_00320 [Bacteroides sp. 3_1_19]
gi|423333781|ref|ZP_17311562.1| hypothetical protein HMPREF1075_03213 [Parabacteroides distasonis
CL03T12C09]
gi|256739467|gb|EEU52791.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|298268537|gb|EFI10192.1| hypothetical protein HMPREF0104_00320 [Bacteroides sp. 3_1_19]
gi|409227091|gb|EKN19993.1| hypothetical protein HMPREF1075_03213 [Parabacteroides distasonis
CL03T12C09]
Length = 329
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 146/288 (50%), Gaps = 23/288 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D +++ +RL+ +R+G+ + YT VS+ I Q+ L + ++RP
Sbjct: 8 LGERPVFLAPMEDVTDISFRLMCKRFGADMVYTEFVSSDALIRSVNKTQQKLNVSDDERP 67
Query: 206 LIIQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D ++ EAA++ E H D +DIN GCP + VA +G GA + + PL+ +
Sbjct: 68 VAIQIYGKDVASMVEAARICEEAHPDILDINFGCPVKKVAGKGA-GAGMLRNIPLMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV +PV+ K R+ D + V+ A L+ G L++HGRT Q M TG A W
Sbjct: 127 REVVKAVNIPVTVKTRLGWDADNRVIVDLAEQLQDCGIAALSIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I AV+ + IP+I NG++ + GV VM ++ P +F
Sbjct: 185 TLIGAVKNNPRMQIPIIGNGDVTSAEICKQRFEDYGVDAVMIGRASIGRPWIFREIKHYL 244
Query: 373 -TGQTRPAWELASEYLDL----VAQYPVRLQYARGHVFNMCHHLLTLP 415
TG+ P E S YLD+ V Q RL RG + ++ HL P
Sbjct: 245 TTGKLLPQ-EPFSWYLDILKKQVEQSVERLDERRG-ILHIRRHLAATP 290
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LG LAPM D +++ +RL+ +R+G+ + YT VS+ I Q+ L + ++RP
Sbjct: 8 LGERPVFLAPMEDVTDISFRLMCKRFGADMVYTEFVSSDALIRSVNKTQQKLNVSDDERP 67
Query: 136 LIIQ 139
+ IQ
Sbjct: 68 VAIQ 71
>gi|315644402|ref|ZP_07897542.1| TIM-barrel protein, nifR3 family [Paenibacillus vortex V453]
gi|315280279|gb|EFU43571.1| TIM-barrel protein, nifR3 family [Paenibacillus vortex V453]
Length = 343
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 124/228 (54%), Gaps = 14/228 (6%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ +LAPM +RL+++ +G+ L MVS + K QE+L ++PL +Q
Sbjct: 14 QVVLAPMAGVCNPAFRLIAKEFGTGLVCAEMVSGKAIVHGNKRTQEMLFVDEREKPLSLQ 73
Query: 210 FCGNDSKNLTEAAKLAE--PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTN----LV 263
G D +L EAAK+ + + D IDIN+GCP + GA W L +N +V
Sbjct: 74 IFGGDRDSLVEAAKVVDQQTNADIIDINMGCPAPKVTKMDAGAR----WLLNSNKIYEMV 129
Query: 264 SSLRQAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+++ AV PV+ K+R D + VE A+ +ERAG Q ++VHGRT +Q + TG A W
Sbjct: 130 AAVVDAVNKPVTVKMRTGWDSDHIYAVENAQAVERAGGQAVSVHGRTREQ--LYTGHADW 187
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
+ I V++A++IPVI NG++ D L TG GVM G L NP
Sbjct: 188 DIIRQVKEAVSIPVIGNGDVVTPEDARRMLDITGCDGVMIGRGALGNP 235
>gi|345800966|ref|XP_546866.3| PREDICTED: tRNA-dihydrouridine synthase 2-like [Canis lupus
familiaris]
Length = 493
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 145/294 (49%), Gaps = 25/294 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST----PEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + + K++ E+L + P++R
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPDERV 72
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q +D+ AKL E GID+N+GCP+ + +G GA L
Sbjct: 73 VFRTCEREQSRVVFQMGTSDADRALAVAKLVENDVAGIDVNMGCPKEYSTKGGMGAALLS 132
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + ++S+L + ++ PV+CKIRI + T+ + +ER G + VHGR ++R
Sbjct: 133 DPDKIEKILSTLVKGIRRPVTCKIRILPSLEDTLSLVKRIERTGIAAVTVHGRKREERPQ 192
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ S E I A+ + ++IPVIANG IQ D+E T + VM A ++NP+
Sbjct: 193 HP--VSCEAIKAIAETVSIPVIANGGSHDHIQKYLDIEDFRQATAASSVMVARAAMWNPS 250
Query: 371 LFTGQT-RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+F + RP E+ +Y+ QY + + +C L E+ RLL
Sbjct: 251 IFLKEGLRPLEEVMQKYIRYAVQYE---NHYTNTKYCLCQMLREQLESPQGRLL 301
>gi|336287978|gb|AEI30274.1| TIM-barrel protein nifR3 family [uncultured microorganism]
Length = 265
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 136/243 (55%), Gaps = 12/243 (4%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ +LAP+ S +R ++R +G+ + ++ MVS+ + + K + + + E+RP+ IQ
Sbjct: 12 KILLAPLAGISNSIFRKINRLHGADIVFSEMVSSEGTVRNNKSTIDYIKFSEEERPIGIQ 71
Query: 210 FCGNDSKNLTEAAKLAEP--HCDGIDINIGCP--QMVAKRGHYGAYLQDDWPLLTNLVSS 265
G D + + EAA+ E + IDIN GCP ++++K G G+ L D PLL +V+S
Sbjct: 72 IFGADPRIMAEAARYVEEIFKPELIDINFGCPVRKVISKNG--GSALLKDPPLLGKIVNS 129
Query: 266 LRQAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ AV+ PV+ KIR NK +E +++E+ G + +H RT Q TG A+W+
Sbjct: 130 VVAAVKTPVTVKIRSGWRRNKINVIETTKIIEQNGAAAITLHPRT--QEDGFTGKANWDL 187
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I ++K ++IPVI NG+I C +D L +TG VM A G L NP +F + + W
Sbjct: 188 IAEIKKNISIPVIGNGDILCGSDAVRMLKETGCDAVMIARGALGNPWIFE-EAKTLWA-G 245
Query: 384 SEY 386
EY
Sbjct: 246 KEY 248
>gi|118497579|ref|YP_898629.1| tRNA-dihydrouridine synthase [Francisella novicida U112]
gi|195536275|ref|ZP_03079282.1| putative TIM-barrel protein, nifR3 family [Francisella novicida
FTE]
gi|118423485|gb|ABK89875.1| tRNA-dihydrouridine synthase [Francisella novicida U112]
gi|194372752|gb|EDX27463.1| putative TIM-barrel protein, nifR3 family [Francisella tularensis
subsp. novicida FTE]
Length = 328
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/307 (32%), Positives = 160/307 (52%), Gaps = 23/307 (7%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM + +R + + +G+ L YT MVS + E+L ++PL IQ
Sbjct: 15 VLAPMAGFCDSAFRTICKEHGAGLIYTEMVSNKAVVERNWETMEMLYMENSEKPLGIQIF 74
Query: 212 GNDSKNLTEAAK-LAE-PHCDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G D + A K +AE CD +DIN+GCP VAK+ GA L D + +++++ +
Sbjct: 75 GTDIDSFVGATKYIAENTECDFLDINMGCPMPKVAKKLQAGAALLKDVNRIHEILTAVVK 134
Query: 269 AVQVPVSCKIRI-YQDVN-KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV PV+ K+RI + D N +E A+ E AG +A+HGRT +Q M TG A+W+ I
Sbjct: 135 AVHKPVTVKMRIGWDDKNINAIEVAKACEDAGVSAIAIHGRTREQ--MYTGKANWDIIRD 192
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRP 378
VRKA+ I VI NG++ C +A + TGV VM + NP +F TG+ P
Sbjct: 193 VRKAVDIVVIGNGDVFCPHSAKAMIEHTGVDAVMVGRASRGNPWIFRQIAKYLNTGELIP 252
Query: 379 AWELASEYLDLVAQY---PVRLQYARGHVFNMCHH----LLTLPENSDVRLLVGKTNHIK 431
E +D++ ++ ++L+ A+ V + H L LP + + R+ + + H +
Sbjct: 253 P-PTPVERVDVLEEHLRRLIKLKTAKVAVKEIRTHASFYLQDLPNSKEFRMKLNQLEHEQ 311
Query: 432 DLRKAVD 438
++ K ++
Sbjct: 312 EIFKILE 318
>gi|357974360|ref|ZP_09138331.1| nifR3 family TIM-barrel protein [Sphingomonas sp. KC8]
Length = 337
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 141/294 (47%), Gaps = 19/294 (6%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
ILAPM S+LP+R + R +GS L T M+++ I + + + P + P+ +Q
Sbjct: 23 VILAPMTGVSDLPFRKVVREFGSGLNVTEMIASQAAIRETRQSLQKWAWDPIEEPVSMQL 82
Query: 211 CGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G + EAAKL A+ IDIN+GCP G G+ L L +V ++ A
Sbjct: 83 VGCTPAEMAEAAKLSADRGAAIIDINMGCPVRKVVNGDAGSALMRVPELAVEIVKAVVGA 142
Query: 270 VQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
V VPV+ K+R+ D N E AR+ E G +++ VHGRT Q M G A W I V
Sbjct: 143 VDVPVTLKMRMGWDHNSLNAPELARIAEDVGVKMITVHGRTRCQ--MYKGSADWAFIRNV 200
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRPA 379
+ A++IPVIANG+I + D + LAQ+G G+M G P L TGQ P
Sbjct: 201 KDAVSIPVIANGDICSIEDADQALAQSGADGIMIGRGAYGRPWLLHQVMHWLETGQKLPD 260
Query: 380 WELASEYLDLVAQYPVRLQ-YARGHVFNMCH-----HLLTLPENSDVRLLVGKT 427
+ +Y + Y L Y NM + LP +++ R V +T
Sbjct: 261 PTIDEQYRVITDHYRSMLDHYGEFTGVNMARKHIGWYTKGLPGSAEFRNTVNQT 314
>gi|406989941|gb|EKE09649.1| hypothetical protein ACD_16C00129G0001 [uncultured bacterium]
Length = 291
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 124/223 (55%), Gaps = 9/223 (4%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS--TPEDRPLIIQ 209
ILAPM +++P+R L +R G+ L + M+++H I ++ RQ +LM+ TPE+ P+ +Q
Sbjct: 15 ILAPMSGVTDMPFRRLVKRQGASLVISEMIASHAMI--RQTRQSLLMAKHTPEEYPMAVQ 72
Query: 210 FCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G + + + EAAKL E I DIN+GCPQ + G+ L D L ++ + +
Sbjct: 73 LVGCEPEVMAEAAKLNEDWGAAILDINMGCPQKKVVNEYAGSALMKDEVLAAKIIEATVK 132
Query: 269 AVQVPVSCKIRI-YQDVNKTV-EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV +PV+ K+R + + N+ A++ E G ++L +HGRT Q + G A W I
Sbjct: 133 AVNIPVTLKMRTGWDEKNRNAPALAKIAEECGIRMLTIHGRTRCQ--LYRGKADWSFIRK 190
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
V+ A+ IPVI NG+++ D + L +G GVM G P
Sbjct: 191 VKDAVKIPVIGNGDVKTEEDAKTLLEHSGADGVMVGRGVYGKP 233
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS--TPEDRPLIIQ 139
ILAPM +++P+R L +R G+ L + M+++H I ++ RQ +LM+ TPE+ P+ +Q
Sbjct: 15 ILAPMSGVTDMPFRRLVKRQGASLVISEMIASHAMI--RQTRQSLLMAKHTPEEYPMAVQ 72
>gi|375254877|ref|YP_005014044.1| nifR3 family TIM-barrel protein [Tannerella forsythia ATCC 43037]
gi|363407716|gb|AEW21402.1| TIM-barrel protein, nifR3 family [Tannerella forsythia ATCC 43037]
Length = 350
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/328 (31%), Positives = 165/328 (50%), Gaps = 31/328 (9%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG +LAPM D +++ +RL+ +++G+ + YT VS+ I +E L + E+RP
Sbjct: 24 LGERPVMLAPMEDVTDISFRLMCKQFGADMVYTEFVSSDALIRQVSKTEEKLKVSDEERP 83
Query: 206 LIIQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G + + EAA++ E H D +DIN GCP + VA +G GA + + PL+ +
Sbjct: 84 VAIQIYGREVMPMVEAAQICEAAHPDMLDINFGCPVKKVANKG-AGAGMLRNLPLMLEIT 142
Query: 264 SSLRQAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
++ +AV +PV+ K R+ D + VE A L+ G L +HGRT Q M TG A W
Sbjct: 143 RAVVKAVNIPVTVKTRLGWDADHRIIVELAEQLQDCGIAALTIHGRTRAQ--MYTGEADW 200
Query: 322 EHITAVRK--ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I AV++ + IP+I NG+I + GV G+M ++ P +F
Sbjct: 201 TLIGAVKENPRMHIPIIGNGDITSAKRCKEAFECYGVDGIMIGRASIGQPWIFREVKHFL 260
Query: 373 -TGQT-RPAWELASEYLDL----VAQYPVRLQYARGHVFNMCHHLLT------LPENSDV 420
TG++ RP E YL++ V Q RL RG + ++ HL +P+
Sbjct: 261 QTGESLRP--ESFVWYLNILKRQVRQSVERLDERRG-ILHIRRHLAVTPLFKGIPDFKST 317
Query: 421 RLLVGKTNHIKDLRKAVDMLRERFIDYH 448
R+ + + + +L + +D + E D H
Sbjct: 318 RVAMLRAETVAELFEIMDGVEEIIRDKH 345
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LG +LAPM D +++ +RL+ +++G+ + YT VS+ I +E L + E+RP
Sbjct: 24 LGERPVMLAPMEDVTDISFRLMCKQFGADMVYTEFVSSDALIRQVSKTEEKLKVSDEERP 83
Query: 136 LIIQRTIFPRLGSPRFILAPMVDASEL 162
+ IQ I+ R + PMV+A+++
Sbjct: 84 VAIQ--IYGRE------VMPMVEAAQI 102
>gi|418406928|ref|ZP_12980247.1| tRNA-dihydrouridine synthase protein [Agrobacterium tumefaciens 5A]
gi|358007421|gb|EHJ99744.1| tRNA-dihydrouridine synthase protein [Agrobacterium tumefaciens 5A]
Length = 308
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 159/309 (51%), Gaps = 30/309 (9%)
Query: 156 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK-----KLRQEILMSTPEDRPLIIQF 210
M ++LP+R L+ RYG+ L T MV++ + +A++ +L+ ++ P ++Q
Sbjct: 1 MSGVTDLPFRQLAWRYGAGLVVTEMVASRELVANRGESWARLKNAGMV------PHMVQL 54
Query: 211 CGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G ++ + EAAK+A + GI DIN+GCP G+ G+ L D +L+ + A
Sbjct: 55 AGREAHFMAEAAKIAADNGAGIIDINMGCPAKKVTGGYSGSALMRDPDHALSLIEATVGA 114
Query: 270 VQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
V VPV+ K+R+ D N E AR + AG QL+ +HGRT Q G A+W+ I AV
Sbjct: 115 VDVPVTLKMRLGWDENTINAPEIARRAQAAGIQLITIHGRTRMQ--FYEGRANWDAIRAV 172
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMT---AEGNLYNPALFTGQTRPA----W 380
R+ +++P+IANG+++ D L+++G VM A+G + PA+ G P
Sbjct: 173 REVISVPLIANGDVETAEDAREILSRSGADAVMVGRGAQGQPWLPAVLAGHAAPQRADIA 232
Query: 381 ELASEYLDLVAQYPVR---LQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAV 437
++A E+ D++ ++ R L++AR H+ T +D K +D +
Sbjct: 233 DIAVEHYDMMLEFYGREAGLRHARKHLGWYLDRFATEIATTD----KAKIMTSRDTGEVA 288
Query: 438 DMLRERFID 446
D+LR D
Sbjct: 289 DLLRSALCD 297
>gi|218781043|ref|YP_002432361.1| nifR3 family TIM-barrel protein [Desulfatibacillum alkenivorans
AK-01]
gi|218762427|gb|ACL04893.1| TIM-barrel protein, nifR3 family [Desulfatibacillum alkenivorans
AK-01]
Length = 332
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 158/330 (47%), Gaps = 22/330 (6%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
+L +P + AP+ + LP RL+++R+G+ L + M+S++ I +K E++ S E+R
Sbjct: 8 KLDNP-LVCAPLAGVTNLPLRLMAKRHGAALVCSEMISSNGLIRYQKKTMELMASKEEER 66
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
PL IQ G+D L ++A++ H D +DIN GC +G G+ L D P ++
Sbjct: 67 PLSIQIFGSDPGVLADSARIVAEHGADIVDINFGCSVKKVLKGGAGSALMADLPRAEKIL 126
Query: 264 SSLRQAVQVPVSCKIRIYQDV--NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+R+A+ +P + K+R D ++ + R+ + AG +A+H RT Q G +G + W
Sbjct: 127 KEVRKAISLPFTIKMRSGWDASGDEAMALGRIAQDAGVDAVALHPRTAKQ-GF-SGHSDW 184
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG-----QT 376
I +++ LTIPVI NG++ V + QTG GVM LY P +F +
Sbjct: 185 SQIKRLKQELTIPVIGNGDVTKPEHVLEMMEQTGCDGVMIGRAVLYAPWIFRQALCLLEN 244
Query: 377 RPAWELA--------SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTN 428
RP E+ +YLD Y R + + LP + R G+
Sbjct: 245 RPMEEIDLDDRKKVLFDYLDDTMDYLGEEHGCRVMRSRLAWFVKGLPNAAKFR---GEIT 301
Query: 429 HIKDLRKAVDMLRERFIDYHEGRKLWPPPN 458
I +A D++ E F + R+ P +
Sbjct: 302 RIASKEQARDLIEEFFRSIEKRREEAPAAS 331
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 111/249 (44%), Gaps = 36/249 (14%)
Query: 72 AWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP 131
A +L +P + AP+ + LP RL+++R+G+ L + M+S++ I +K E++ S
Sbjct: 5 ASLKLDNP-LVCAPLAGVTNLPLRLMAKRHGAALVCSEMISSNGLIRYQKKTMELMASKE 63
Query: 132 EDRPLIIQRTIFPR-----LGSPRFILAPMVDASELPW-----RLLSRRYGSHLCYTPMV 181
E+RPL IQ IF S R + D ++ + ++L GS L +
Sbjct: 64 EERPLSIQ--IFGSDPGVLADSARIVAEHGADIVDINFGCSVKKVLKGGAGSAL-MADLP 120
Query: 182 SAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCD-GIDINIGCPQ 240
A + + K++R+ I + P I+ + EA L D G+D P+
Sbjct: 121 RAEKIL--KEVRKAISL------PFTIKMRSGWDASGDEAMALGRIAQDAGVDAVALHPR 172
Query: 241 MVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQ 300
AK+G G DW + + L+Q + +PV DV K M+E+ GC
Sbjct: 173 -TAKQGFSG---HSDW----SQIKRLKQELTIPVIGN----GDVTKPEHVLEMMEQTGCD 220
Query: 301 LLAVHGRTV 309
+ + GR V
Sbjct: 221 GVMI-GRAV 228
>gi|160916172|ref|ZP_02078379.1| hypothetical protein EUBDOL_02199 [Eubacterium dolichum DSM 3991]
gi|158431896|gb|EDP10185.1| TIM-barrel protein, nifR3 family [Eubacterium dolichum DSM 3991]
Length = 335
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 121/227 (53%), Gaps = 6/227 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ ++APM S +R++ +++G+ L YT MVS D + + + PL +Q
Sbjct: 16 QVVIAPMAGISNPAFRVICKQFGAGLIYTEMVSDKALYYDNEKTIGMTAVEENEHPLALQ 75
Query: 210 FCGNDSKNLTEAAKLAEP--HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G+D + + AAKL + +CD IDIN+GCP + + G+ L D +V ++
Sbjct: 76 LFGHDIETMVYAAKLMDEKTNCDIIDINMGCPVTKIVKSNAGSALMKDPEHAIAMVKAVV 135
Query: 268 QAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+ V+ PV+ K+RI D+ VE A+ LE G +AVHGRT Q M G A W +I
Sbjct: 136 ENVKKPVTVKMRIGWDLEHINCVELAKGLEAVGVAAIAVHGRTKKQ--MYEGHADWSYIK 193
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
V+ A++IPVI NG+I C D + L +TG VM G L +P L
Sbjct: 194 MVKDAVSIPVIGNGDIHCGEDAKRMLEETGCDAVMVGRGVLGDPWLI 240
>gi|167745535|ref|ZP_02417662.1| hypothetical protein ANACAC_00226 [Anaerostipes caccae DSM 14662]
gi|167655256|gb|EDR99385.1| TIM-barrel protein, nifR3 family [Anaerostipes caccae DSM 14662]
Length = 332
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 124/226 (54%), Gaps = 7/226 (3%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
F+LAPM ++LP+RLL + G+ L YT MVSA + +L +RP+ Q
Sbjct: 21 FLLAPMAGVTDLPYRLLCKEMGAGLLYTEMVSAKGMYYNSPNTGPLLAKEEWERPIAAQI 80
Query: 211 CGNDSKNLTE-AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G++ + + + A ++ E D IDIN+GCP G+ L D L ++ ++
Sbjct: 81 FGSEPELMADMAVRVQEMGFDLIDINMGCPVPKIVNNGDGSALMKDPVLAGKIIKAMADR 140
Query: 270 VQVPVSCKIRIYQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
+ VPV+ KIR D VN VE A++ E++G +AVHGRT +Q +G A W+ I
Sbjct: 141 LSVPVTVKIRKGFDDEHVN-AVEMAKIAEQSGAAAVAVHGRTREQ--YYSGKADWDIIRQ 197
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
V++A++IPVI NG+I D EA L +TG G M A G NP +F
Sbjct: 198 VKEAVSIPVIGNGDINSPLDAEAMLRETGCDGFMIARGAKGNPWIF 243
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 101/236 (42%), Gaps = 44/236 (18%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
F+LAPM ++LP+RLL + G+ L YT MVSA + +L +RP+ Q
Sbjct: 21 FLLAPMAGVTDLPYRLLCKEMGAGLLYTEMVSAKGMYYNSPNTGPLLAKEEWERPIAAQ- 79
Query: 141 TIFPRLGSPRFILAPM-VDASELPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQE 195
IF GS ++A M V E+ + L+ G C P + + D L +
Sbjct: 80 -IF---GSEPELMADMAVRVQEMGFDLIDINMG---CPVPKIVNNGDGSALMKDPVLAGK 132
Query: 196 ILMSTPEDR---PLIIQF-CGNDSK--NLTEAAKLAEPHCDGIDINIGCPQMVAKRG--- 246
I+ + DR P+ ++ G D + N E AK+AE VA G
Sbjct: 133 IIKAMA-DRLSVPVTVKIRKGFDDEHVNAVEMAKIAEQS---------GAAAVAVHGRTR 182
Query: 247 --HYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQ 300
+Y + DW +++ +++AV +PV D+N ++ ML GC
Sbjct: 183 EQYYSG--KADW----DIIRQVKEAVSIPVIGN----GDINSPLDAEAMLRETGCD 228
>gi|347832110|emb|CCD47807.1| similar to tRNA-dihydrouridine synthase 4-like [Botryotinia
fuckeliana]
Length = 331
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 142/299 (47%), Gaps = 12/299 (4%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
P + APMV S+L +R +YG LC+TPM+ A +F R ++P P I
Sbjct: 33 PLYTCAPMVRYSKLAFRETVAQYGVDLCWTPMILAKEFNRSVFARDSDFTTSPTSGPTIA 92
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
QF ++ + L P+ +G+DIN GCPQ A GA L L+ +V +
Sbjct: 93 QFGVCSPLEISRSTTLLAPYVNGVDINCGCPQSWACACSIGAALMHKRELVAEMVKEAKS 152
Query: 269 AVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
A++ + V +T+++ ++ AG + +HGR + ++ + E I +
Sbjct: 153 ALKRD---GFEGKKTVRETIDFINTVQDAGVDFITIHGRM--RSTPSSHPVNLEAIKLLT 207
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
T+P ++NG+I L+D + TGV+GVM+A G L NPALF G WE +++
Sbjct: 208 THTTVPTLSNGDIFTLSDAFHHTSHTGVSGVMSARGLLENPALFAGYASTPWECVDVFMN 267
Query: 389 LVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHI-----KDLRKAVDMLRE 442
V + P+ + H+ MC +N L+GK + +D+ +D++ E
Sbjct: 268 QVLKQPIPFKLVVHHLSEMCG--TDRSQNGGNNGLLGKEERMRLMECRDMVDVIDLMDE 324
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P + APMV S+L +R +YG LC+TPM+ A +F R ++P P I
Sbjct: 33 PLYTCAPMVRYSKLAFRETVAQYGVDLCWTPMILAKEFNRSVFARDSDFTTSPTSGPTIA 92
Query: 139 QRTIFPRLGSPR--FILAPMVDASEL 162
Q + L R +LAP V+ ++
Sbjct: 93 QFGVCSPLEISRSTTLLAPYVNGVDI 118
>gi|452750539|ref|ZP_21950286.1| tRNA dihydrouridine synthase B [alpha proteobacterium JLT2015]
gi|451961733|gb|EMD84142.1| tRNA dihydrouridine synthase B [alpha proteobacterium JLT2015]
Length = 332
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 122/226 (53%), Gaps = 7/226 (3%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
ILAPM ++ P+R L +RYG+ L T M+++ + + + + P + P+ +Q
Sbjct: 18 VILAPMTGVTDGPFRKLVKRYGAGLTVTEMIASQAAVRETRRSLQQAAWDPIEEPVSMQL 77
Query: 211 CGNDSKNLTEAAKLAEPHCDG-IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G D + EAAKL E IDIN+GCP GH G+ L + PL T L+ + +A
Sbjct: 78 AGCDPDVMAEAAKLNEQRGAAIIDINMGCPVKKIVNGHAGSALMREVPLATRLMEATVKA 137
Query: 270 VQVPVSCKIRI---YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
V +PV+ K+R+ ++ +N E AR+ E AG Q++ VHGRT Q M G A W +
Sbjct: 138 VDLPVTLKMRMGWDHESLNAP-ELARIAENAGIQMITVHGRTRCQ--MYKGTADWHFVRR 194
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
V++A ++PV+ NG+I + D + L Q+G VM G P L
Sbjct: 195 VKEATSLPVVVNGDICSVEDAKTALDQSGADAVMVGRGCYGKPWLL 240
>gi|149194756|ref|ZP_01871851.1| tRNA-dihydrouridine synthase B [Caminibacter mediatlanticus TB-2]
gi|149135179|gb|EDM23660.1| tRNA-dihydrouridine synthase B [Caminibacter mediatlanticus TB-2]
Length = 311
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 123/229 (53%), Gaps = 6/229 (2%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLI 207
P F LAP+ ++LP+R + + +G + ++ M++A+ + + ++++ + ++ P
Sbjct: 10 KPLFFLAPLAGYTDLPFRSVVKEFGCDMTFSEMINANAIAFNNEKTKKMMQKSSKETPYF 69
Query: 208 IQFCGNDSKNLTEAAKLAE--PHCDGIDINIGCPQMVAKRGHYGAYLQDDW--PLLTNLV 263
IQ N+ +N +A ++ P DGIDIN+GCP A+R YG L D L +V
Sbjct: 70 IQIAANNVENAIKAVEIINEIPWIDGIDINLGCPVNKARRSGYGGVLLKDENKEKLKEIV 129
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
S++ + + VS K+R+ + V+ A+MLE G + L VHGRTV Q M G A+++
Sbjct: 130 SAIIKTSKKIVSAKMRLGYNEVVAVDRAKMLEDLGIKFLTVHGRTVKQ--MYKGNANYKE 187
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
I V K + IPVIANG+I + L T GV G + P +F
Sbjct: 188 IKKVVKEVNIPVIANGDITDYKKAKEVLEYTEANGVAIGRGVIGKPWIF 236
>gi|150003654|ref|YP_001298398.1| dehydrogenase [Bacteroides vulgatus ATCC 8482]
gi|149932078|gb|ABR38776.1| putative TIM-barrel enzyme, possible dehydrogenase, contains a
highly conserved dihydrouridine synthase domain
[Bacteroides vulgatus ATCC 8482]
Length = 329
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 155/326 (47%), Gaps = 35/326 (10%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D ++ +RL+ +++G+ + YT VSA I + L E+RP
Sbjct: 8 LGRYPIFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSADALIRSVGKTMQKLNINDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D++ + AAK+ E H D +DIN GCP + VA +G GA + + PL+ +
Sbjct: 68 VAIQIYGRDTETMVAAAKIVEEAHPDILDINFGCPVKRVAGKGA-GAGMLQNIPLMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
++ V++PV+ K R+ D V+ A L+ G + L +HGRT Q M TG A W
Sbjct: 127 RAVVDTVKIPVTVKTRLGWDNEHKIIVDLAEQLQDCGIEALTIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I V+K + IP+I NG+I + C Q GV +M + P +F
Sbjct: 185 SLIGEVKKNPRMHIPIIGNGDITTPQRAKECFDQYGVDAIMIGRASFGRPWIFKEVKHYI 244
Query: 373 -TGQTRPA----WELA---SEYLDLVAQYPVRLQYARGHVFNMCHHLLT------LPENS 418
TG+ PA W L E LD V L R + ++ HL +P
Sbjct: 245 ETGKELPALSFEWRLNVLRQEVLD-----SVNLLDERRGILHVRRHLAASPLFKGIPNFK 299
Query: 419 DVRLLVGKTNHIKDLRKAVDMLRERF 444
+ R+ + + +K+L +D +R +
Sbjct: 300 ETRIAMLRAETVKELFSILDYIRGNY 325
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
LG LAPM D ++ +RL+ +++G+ + YT VSA I + L E+R
Sbjct: 7 DLGRYPIFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSADALIRSVGKTMQKLNINDEER 66
Query: 135 PLIIQ 139
P+ IQ
Sbjct: 67 PVAIQ 71
>gi|374723961|gb|EHR76041.1| tRNA-dihydrouridine synthase B [uncultured marine group II
euryarchaeote]
Length = 344
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 119/232 (51%), Gaps = 5/232 (2%)
Query: 144 PRLGSPR-FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 202
P G PR LAPM S+LP+RLL++ G+ + T ++ + + + S
Sbjct: 11 PWDGEPRPLFLAPMAGVSDLPFRLLAKACGADVTITEFTNSTALTREAAVSWRKMESHET 70
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
+ P I Q G D ++ AA++ P D ID+N GCP + GA L + L ++
Sbjct: 71 EVPFIPQIFGGDPNDMATAAEMLAPTADIIDLNFGCPAPKVTKICAGAALMGEPDNLVSM 130
Query: 263 VSSLRQAVQVPVSCKIRI--YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320
V + Q V VPVS K+R+ Q N +E + LE G L VHGRT+ QR +G A
Sbjct: 131 VDGIIQKVDVPVSAKMRLGTGQGANNALEICKELEDIGTARLCVHGRTLRQR--YSGEAD 188
Query: 321 WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
W I ++ A+ PV+ANG++ A + CL TG +G+M G + P++F
Sbjct: 189 WNSIKSIVDAVETPVVANGDVVDAASAKDCLEVTGASGLMVGRGAIGRPSVF 240
>gi|307564816|ref|ZP_07627344.1| TIM-barrel protein, nifR3 family [Prevotella amnii CRIS 21A-A]
gi|307346538|gb|EFN91847.1| TIM-barrel protein, nifR3 family [Prevotella amnii CRIS 21A-A]
Length = 325
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 161/310 (51%), Gaps = 18/310 (5%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
+G LAPM D +++ +R + +RYG+ + YT VSA I + K ++ +RP
Sbjct: 8 IGYRPLFLAPMEDVTDIGFRSMCKRYGAAMVYTEFVSADAIIRNIKSTLSKMVIDDNERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHC-DGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
IQ GN+ +++ EAAK+ E D IDIN GCP + VA +G GA L + PLL N+V
Sbjct: 68 TGIQIYGNNVESMVEAAKIVEEAKPDVIDINFGCPVKKVAGKGA-GAGLLRNIPLLLNIV 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV VPV+ K R+ D + + + A ++ G + L +HGRT +Q M TG A W
Sbjct: 127 REVVKAVNVPVTVKTRLGWDEHNLIITDLAEQIQDCGAKALTIHGRTREQ--MYTGKADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF-TGQTRP 378
I V K +TIP+I NG+I + D + GV VM P LF QT
Sbjct: 185 TLIGKVAKNPHITIPIIGNGDIVSVKDAYDHFDKYGVDAVMIGRATFGCPWLFCKDQTSL 244
Query: 379 AWELASEYLDLVAQYPV-RLQYARGHVFNMCHHLLT------LPENSDVRLLVGKTNHIK 431
+ + + L+ + + V R+ RG + + HL +P+ +R+ + + + ++
Sbjct: 245 SLDDKIDVLEEMLRINVERIDEYRG-ILHTRRHLAASPIFKGIPDFKQMRIAMLRCSKME 303
Query: 432 DLRKAVDMLR 441
+L K ++ +R
Sbjct: 304 ELIKMLEEIR 313
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
+G LAPM D +++ +R + +RYG+ + YT VSA I + K ++ +R
Sbjct: 7 DIGYRPLFLAPMEDVTDIGFRSMCKRYGAAMVYTEFVSADAIIRNIKSTLSKMVIDDNER 66
Query: 135 PLIIQ 139
P IQ
Sbjct: 67 PTGIQ 71
>gi|402814523|ref|ZP_10864117.1| putative tRNA-dihydrouridine synthase 1 [Paenibacillus alvei DSM
29]
gi|402508370|gb|EJW18891.1| putative tRNA-dihydrouridine synthase 1 [Paenibacillus alvei DSM
29]
Length = 333
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 124/224 (55%), Gaps = 6/224 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ +LAPM +RL+++ +G L MVS + + +E+L ++PL +Q
Sbjct: 12 QVVLAPMAGVCNPAFRLIAKEFGCGLVCAEMVSDKALVHGNERTREMLYVDDREKPLSLQ 71
Query: 210 FCGNDSKNLTEAAKLAEP--HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G D K+L EAAK+ + + D IDIN+GCP + GA + + +VS++
Sbjct: 72 IFGGDRKSLVEAAKIVDKDSNADIIDINMGCPVPKVTKCDAGARWLLNPEKIYEMVSAVV 131
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV PV+ K+RI D + VE A+ +ERAG Q ++VHGRT +Q + TG A W +I
Sbjct: 132 DAVDKPVTVKMRIGWDHDHIYVVENAKAVERAGGQAVSVHGRTREQ--LYTGQADWSYIR 189
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
V++ ++IPVI NG++ D + L +TG GVM G L NP
Sbjct: 190 QVKENVSIPVIGNGDVFSPEDAKRMLEETGCDGVMIGRGALGNP 233
>gi|428225324|ref|YP_007109421.1| nifR3 family TIM-barrel protein [Geitlerinema sp. PCC 7407]
gi|427985225|gb|AFY66369.1| TIM-barrel protein, nifR3 family [Geitlerinema sp. PCC 7407]
Length = 346
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 98/262 (37%), Positives = 141/262 (53%), Gaps = 21/262 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYG-SHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
R + +P+ ++L +R L RRY + YT MVSA + +KL +++ P++RP+ I
Sbjct: 26 RVLQSPLSGVTDLVFRRLVRRYAPDSMMYTEMVSASELHHVRKL-PKLMEVDPQERPISI 84
Query: 209 QFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
Q L EAA++A D +DIN+GCP + G+ L + +V S+
Sbjct: 85 QLFDCRPDFLAEAARMAVAEGADTVDINMGCPVNKITKNGGGSSLLRQPAIAEEIVRSVV 144
Query: 268 QAVQVPVSCKIRI-YQDVN-KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV+VPV+ K RI + D VE+ R +E AG Q+L +HGRT +Q G N G A WE I
Sbjct: 145 AAVEVPVTVKTRIGWSDGEINAVEFGRRMEDAGAQMLTLHGRTREQ-GYN-GAARWEWIG 202
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTR 377
V+ AL+IPVIANG+I + CL +TG GVM + G L P L TG+ R
Sbjct: 203 RVKAALSIPVIANGDIFSVESAVRCLEETGADGVMCSRGTLGYPFLVGEIDHFLKTGEYR 262
Query: 378 ----PAWEL--ASEYLDLVAQY 393
PA L A E+L ++ +Y
Sbjct: 263 QPPTPAERLLCAREHLQMLWEY 284
>gi|313899890|ref|ZP_07833393.1| TIM-barrel protein, nifR3 family [Clostridium sp. HGF2]
gi|312955505|gb|EFR37170.1| TIM-barrel protein, nifR3 family [Clostridium sp. HGF2]
Length = 338
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 122/227 (53%), Gaps = 6/227 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ ++APM S +R++ + +G+ L YT MVS D + + ++ PL +Q
Sbjct: 16 QVVIAPMAGISNPAFRVICKEFGAGLIYTEMVSDKALYYDNEKTVGMTDVEEQEHPLAMQ 75
Query: 210 FCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G+D + + AAK + CD IDIN+GCP + G+ L D + ++
Sbjct: 76 IFGHDIEIMVYAAKFLDEKTDCDIIDINMGCPVTKIVKSFAGSALMKDVDHAVEMSRAVV 135
Query: 268 QAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
Q+V+ PV+ K+RI D+++ +E AR LE G Q LAVHGRT Q M G A W +I
Sbjct: 136 QSVKKPVTVKMRIGWDMDQITCLELARGLESVGVQALAVHGRTRKQ--MYEGCADWSYIK 193
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
V++A++IPV+ NG+++ D E L +TG VM G L +P L
Sbjct: 194 KVKEAVSIPVMGNGDVRSGEDAERMLKETGCDAVMIGRGVLGDPWLI 240
>gi|424890498|ref|ZP_18314097.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. trifolii WSM2012]
gi|393172716|gb|EJC72761.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. trifolii WSM2012]
Length = 339
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 142/268 (52%), Gaps = 16/268 (5%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R +LAPM +++P+R L+ R+G+ L T MV++ + + D L + RP ++Q
Sbjct: 28 RVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRELVNDTAESWSRLKAAGF-RPHMVQ 86
Query: 210 FCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G ++ + EAAK+A H D IDIN+GCP G+ G+ L D L+ + +
Sbjct: 87 LAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGYSGSALMRDPDHALGLIEATVK 146
Query: 269 AVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV +PV+ K+R+ D N E AR E AG QL+ +HGRT Q G A W+ I
Sbjct: 147 AVDIPVTLKMRLGWDENSINAPEIARRAEAAGIQLVTIHGRTRMQ--FYEGRADWDAIRP 204
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA---EGNLYNPALFTGQTRPAWE-- 381
VR+ ++IP+IANG+++ AD + L ++G M +G ++ + G P E
Sbjct: 205 VREVISIPLIANGDVETAADAQEILRRSGADAAMVGRGCQGRPWHAGVIAGAAAPRPEEI 264
Query: 382 --LASEYLDLVAQY---PVRLQYARGHV 404
+A E+ ++ + V +++AR H+
Sbjct: 265 ADIAVEHYRMMLDFYGEAVAIRHARKHL 292
>gi|254372943|ref|ZP_04988432.1| hypothetical protein FTCG_00514 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570670|gb|EDN36324.1| hypothetical protein FTCG_00514 [Francisella novicida GA99-3549]
Length = 327
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 162/316 (51%), Gaps = 23/316 (7%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM + +R + + +G+ L YT MVS + E+L ++PL IQ
Sbjct: 15 VLAPMAGFCDSAFRTICKEHGAGLIYTEMVSNKAVVERNWETMEMLYMENSEKPLGIQIF 74
Query: 212 GNDSKNLTEAAK-LAE-PHCDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G D + A K +AE CD +DIN+GCP VAK+ GA L D + +++++ +
Sbjct: 75 GTDIDSFVGATKYIAENTECDFLDINMGCPMPKVAKKLQAGAALLKDVNRIHEILTAVVK 134
Query: 269 AVQVPVSCKIRI-YQDVN-KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV PV+ K+RI + D N +E A+ E AG +A+HGRT +Q M TG A+W+ I
Sbjct: 135 AVHKPVTVKMRIGWDDKNINAIEVAKACEDAGVSAIAIHGRTREQ--MYTGKANWDIIRN 192
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRP 378
VRKA+ VI NG++ C +A + TGV VM + NP +F TG+ P
Sbjct: 193 VRKAVDTVVIGNGDVFCPHSAKAMIEHTGVDAVMVGRASRGNPWIFRQIAEYLNTGELIP 252
Query: 379 AWELASEYLDLVAQY---PVRLQYARGHVFNMCHH----LLTLPENSDVRLLVGKTNHIK 431
E +D++ ++ ++L+ A+ V + H L LP + + R+ + + H +
Sbjct: 253 P-PTPVERVDVLEEHLRRLIKLKTAKVAVKEIRTHASFYLQDLPNSKEFRMKLNQLEHEQ 311
Query: 432 DLRKAVDMLRERFIDY 447
++ K ++ ++ +
Sbjct: 312 EIFKVLEEYKKSLYKF 327
>gi|194337545|ref|YP_002019339.1| hypothetical protein Ppha_2560 [Pelodictyon phaeoclathratiforme
BU-1]
gi|194310022|gb|ACF44722.1| TIM-barrel protein, nifR3 family [Pelodictyon phaeoclathratiforme
BU-1]
Length = 352
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 103/294 (35%), Positives = 153/294 (52%), Gaps = 33/294 (11%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQF--IADKKLRQEILMSTPEDRPLIIQ 209
ILAPM D ++ +R L +R+G+ + YT +SA +K LR+ L + +RP IQ
Sbjct: 13 ILAPMEDVTDRAFRQLCKRHGADIVYTEFISAEALRRGVEKSLRK--LKTDEVERPFAIQ 70
Query: 210 FCGNDSKNLTEAAKLAEPHC-DGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G+ +++ +AA +AE +C D +DIN GCP + VA +G GA L + +T + ++
Sbjct: 71 IFGSSIESMVDAAVIAEGYCPDYLDINFGCPTKKVAGKGA-GAALLREPEKMTAISEAVV 129
Query: 268 QAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+AV +PV+ K RI D+ ++ LE G Q LA+HGRT + M G A+ E I
Sbjct: 130 KAVSIPVTVKTRIGWDLESINILDILPRLEDVGIQALALHGRTRSE--MFKGRANREWIR 187
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQ-- 375
V++ IPVIANG+I D A A+TG GVM G++ NP +F TG+
Sbjct: 188 QVKEQARIPVIANGDIWSAEDALAMFAETGADGVMIGRGSIGNPFIFEAAKELLKTGKPM 247
Query: 376 ----TRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLT----LPENSDVR 421
R ++A E+L L Q+ + + V M H T LP S VR
Sbjct: 248 PPPDFRARIDVAIEHLKLSVQF----KGEKYGVLEMRRHYSTYLKGLPMVSRVR 297
>gi|238019651|ref|ZP_04600077.1| hypothetical protein VEIDISOL_01525 [Veillonella dispar ATCC 17748]
gi|237863692|gb|EEP64982.1| hypothetical protein VEIDISOL_01525 [Veillonella dispar ATCC 17748]
Length = 328
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 137/259 (52%), Gaps = 19/259 (7%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM S++ +RLL++ +G+ L T MVSA + E+L +RP+ +Q
Sbjct: 18 ILAPMAGVSDIAYRLLAKEHGAALVCTEMVSAMGIKYKNERTHELLRIEEVERPVSMQIF 77
Query: 212 GNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G++ + + AK+ A+ D +DIN+GCP G+ L + L + + +AV
Sbjct: 78 GSNPEAIALGAKVVADAGADIVDINMGCPVKKVVTSGDGSALMKNPDLAARVAEAAVKAV 137
Query: 271 QVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
VPV+ K+RI D + V++A+ +E G +AVHGRT +Q M +G A W +I AV+
Sbjct: 138 DVPVTVKMRIGWDSDSINVVDFAKRIESTGVAAIAVHGRTKEQ--MYSGHADWSYIKAVK 195
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRPA- 379
+A+++PVI NG+I D + L +TG VM G NP +F TG+ A
Sbjct: 196 EAVSVPVIGNGDIVEPEDAKQMLDETGCDAVMVGRGAQGNPWIFNRIHHYLATGEVLAAP 255
Query: 380 -----WELASEYLDLVAQY 393
++ ++ DL+ QY
Sbjct: 256 SDIERLDMLLKHFDLLCQY 274
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 109/251 (43%), Gaps = 45/251 (17%)
Query: 75 QLGSPRF----ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
Q+G+ + ILAPM S++ +RLL++ +G+ L T MVSA + E+L
Sbjct: 7 QIGAVKIDGQAILAPMAGVSDIAYRLLAKEHGAALVCTEMVSAMGIKYKNERTHELLRIE 66
Query: 131 PEDRPLIIQRTIFPR------LGSPRFILAPMVDASELPW-----RLLSRRYGSHLCYTP 179
+RP+ +Q IF LG+ + + D ++ ++++ GS L P
Sbjct: 67 EVERPVSMQ--IFGSNPEAIALGA-KVVADAGADIVDINMGCPVKKVVTSGDGSALMKNP 123
Query: 180 MVSAHQFIADKKLRQEILMSTPEDRPLIIQF---CGNDSKNLTEAAKLAEPHCDGIDINI 236
++A +A+ ++ D P+ ++ +DS N+ + AK E
Sbjct: 124 DLAAR--VAEAAVK-------AVDVPVTVKMRIGWDSDSINVVDFAKRIESTGVAAIAVH 174
Query: 237 GCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLER 296
G + GH DW + + ++++AV VPV D+ + + +ML+
Sbjct: 175 GRTKEQMYSGHA------DW----SYIKAVKEAVSVPVIGN----GDIVEPEDAKQMLDE 220
Query: 297 AGCQLLAVHGR 307
GC + V GR
Sbjct: 221 TGCDAVMV-GR 230
>gi|209549216|ref|YP_002281133.1| hypothetical protein Rleg2_1617 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534972|gb|ACI54907.1| TIM-barrel protein, nifR3 family [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 315
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 141/268 (52%), Gaps = 16/268 (5%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R +LAPM +++P+R L+ R+G+ L T MV++ + + D L + RP ++Q
Sbjct: 4 RVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRELVNDTAESWSRLRAAGF-RPHMVQ 62
Query: 210 FCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G ++ + EAAK+A H D IDIN+GCP G+ G+ L D L+ + +
Sbjct: 63 LAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGYSGSALMRDPDHALGLIEATVK 122
Query: 269 AVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV +PV+ K+R+ D N E AR E AG QL+ +HGRT Q G A W+ I
Sbjct: 123 AVDIPVTLKMRLGWDENSINAPEIARRAEAAGIQLVTIHGRTRMQ--FYEGRADWDAIRP 180
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA---EGNLYNPALFTGQTRPAWE-- 381
VR ++IP+IANG+++ D + L ++G VM +G ++ + G P E
Sbjct: 181 VRDVISIPLIANGDVETAEDAQEILRRSGADAVMIGRGCQGRPWHAGVLAGGAEPRREDI 240
Query: 382 --LASEYLDLVAQY---PVRLQYARGHV 404
+A E+ ++ + V +++AR H+
Sbjct: 241 ADIAVEHYRMMLDFYGEAVAIRHARKHL 268
>gi|310639544|ref|YP_003944302.1| tRNA-dihydrouridine synthase 1 [Paenibacillus polymyxa SC2]
gi|309244494|gb|ADO54061.1| tRNA-dihydrouridine synthase 1 [Paenibacillus polymyxa SC2]
Length = 342
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 124/224 (55%), Gaps = 6/224 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ +LAPM +RL+++ +G+ L MVS I K +E+L ++PL +Q
Sbjct: 12 QVVLAPMAGVCNPAFRLIAKEFGTGLVCAEMVSDKAIIHGNKRTREMLFVDEREKPLSLQ 71
Query: 210 FCGNDSKNLTEAAKLA--EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G D ++L +AAK+ E + D IDIN+GCP + GA D + +VS++
Sbjct: 72 IFGGDRESLVKAAKVVDQETNADIIDINMGCPVPKVTKCDAGARWLLDPNKIYEMVSAVV 131
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
++V PV+ K+RI D VE AR +ERAG Q ++VHGRT +Q + TG A+W+ I
Sbjct: 132 ESVSKPVTVKMRIGWDSEHIYAVENARAVERAGGQAVSVHGRTREQ--LYTGHANWDIIK 189
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
V++A++IPVI NG++ D L T GVM G L NP
Sbjct: 190 EVKEAVSIPVIGNGDVVTPEDARRMLDLTHCDGVMIGRGALGNP 233
>gi|421075868|ref|ZP_15536872.1| TIM-barrel protein, nifR3 family [Pelosinus fermentans JBW45]
gi|392525980|gb|EIW49102.1| TIM-barrel protein, nifR3 family [Pelosinus fermentans JBW45]
Length = 317
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 126/231 (54%), Gaps = 6/231 (2%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
+L +P ILAPM ++LP+RLL++ G L Y+ MVS + + +L +R
Sbjct: 7 KLDNP-VILAPMAGVTDLPFRLLAKEMGCGLVYSEMVSDKGLLYENCQTLHMLEIDERER 65
Query: 205 PLIIQFCGNDSKNLTEAA-KLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
P+ +Q G+D ++ +AA + + D IDIN+GCP + G L L ++
Sbjct: 66 PVAMQIFGSDPDSMAKAAIHVEKSGADIIDINMGCPTPKITKNGSGCALMCQPDLAYQIM 125
Query: 264 SSLRQAVQVPVSCKIRI--YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+S+ +AV VPV+ KIR +D VE A++ E+AG +AVHGRT +Q TG A W
Sbjct: 126 ASVVKAVHVPVTVKIRKGWSEDSVNAVEMAKLAEKAGIAAIAVHGRTREQ--FYTGEADW 183
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
I V++++ IPVI NG+I+ D E + QTG +M G NP +F
Sbjct: 184 NIIRQVKESVVIPVIGNGDIRTPYDGEKMMDQTGCDAIMVGRGAQGNPWIF 234
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 105/243 (43%), Gaps = 34/243 (13%)
Query: 75 QLGSPRF----ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
Q+G+ + ILAPM ++LP+RLL++ G L Y+ MVS + + +L
Sbjct: 2 QIGNIKLDNPVILAPMAGVTDLPFRLLAKEMGCGLVYSEMVSDKGLLYENCQTLHMLEID 61
Query: 131 PEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAH----QF 186
+RP+ +Q IF P + + + ++ G C TP ++ +
Sbjct: 62 ERERPVAMQ--IFGS--DPDSMAKAAIHVEKSGADIIDINMG---CPTPKITKNGSGCAL 114
Query: 187 IADKKLRQEILMSTPE--DRPLIIQF---CGNDSKNLTEAAKLAEPHCDGIDINIGCPQM 241
+ L +I+ S + P+ ++ DS N E AKLAE GI I
Sbjct: 115 MCQPDLAYQIMASVVKAVHVPVTVKIRKGWSEDSVNAVEMAKLAEKA--GI-AAIAVHGR 171
Query: 242 VAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQL 301
++ + G + DW N++ ++++V +PV D+ + +M+++ GC
Sbjct: 172 TREQFYTG---EADW----NIIRQVKESVVIPVIGN----GDIRTPYDGEKMMDQTGCDA 220
Query: 302 LAV 304
+ V
Sbjct: 221 IMV 223
>gi|386038757|ref|YP_005957711.1| tRNA-dihydrouridine synthase B [Paenibacillus polymyxa M1]
gi|343094795|emb|CCC83004.1| tRNA-dihydrouridine synthase B [Paenibacillus polymyxa M1]
Length = 342
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 124/224 (55%), Gaps = 6/224 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ +LAPM +RL+++ +G+ L MVS I K +E+L ++PL +Q
Sbjct: 12 QVVLAPMAGVCNPAFRLIAKEFGTGLVCAEMVSDKAIIHGNKRTREMLFVDEREKPLSLQ 71
Query: 210 FCGNDSKNLTEAAKLA--EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G D ++L +AAK+ E + D IDIN+GCP + GA D + +VS++
Sbjct: 72 IFGGDRESLVKAAKVVDQETNADIIDINMGCPVPKVTKCDAGARWLLDPNKIYEMVSAVV 131
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
++V PV+ K+RI D VE AR +ERAG Q ++VHGRT +Q + TG A+W+ I
Sbjct: 132 ESVSKPVTVKMRIGWDSEHIYAVENARAVERAGGQAVSVHGRTREQ--LYTGHANWDIIK 189
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
V++A++IPVI NG++ D L T GVM G L NP
Sbjct: 190 EVKEAVSIPVIGNGDVVTPEDARRMLDLTHCDGVMIGRGALGNP 233
>gi|402487585|ref|ZP_10834403.1| tRNA-dihydrouridine synthase [Rhizobium sp. CCGE 510]
gi|401813454|gb|EJT05798.1| tRNA-dihydrouridine synthase [Rhizobium sp. CCGE 510]
Length = 331
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 127/235 (54%), Gaps = 9/235 (3%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R +LAPM +++P+R L+ R+G+ L T MV++ + + D L + RP ++Q
Sbjct: 20 RVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRELVNDTAESWSRLQAAGF-RPHMVQ 78
Query: 210 FCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G ++ + EAAK+A H D IDIN+GCP G+ G+ L D L+ + +
Sbjct: 79 LAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGYSGSALMRDPDHALGLIEATVK 138
Query: 269 AVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV +PV+ K+R+ D N + AR E AG QL+ +HGRT Q G A W+ I A
Sbjct: 139 AVDIPVTLKMRLGWDENSINAPDIARRAETAGIQLVTIHGRTRMQ--FYEGRADWDAIRA 196
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA---EGNLYNPALFTGQTRP 378
VR+ ++IP+IANG+++ D + L ++G VM +G ++ + G P
Sbjct: 197 VREVISIPLIANGDVETAEDAQEILRRSGADAVMIGRGCQGRPWHAGVLAGAAAP 251
>gi|299472929|emb|CBN80498.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 569
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 138/280 (49%), Gaps = 24/280 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL------------ 197
+ ILAPMV A LP+R L+ RYG+ +T V + + + +L
Sbjct: 14 KVILAPMVRAGTLPFRALALRYGADTVFTEEVIDRRVVNAVRTENPVLGTVDYVEKRGKK 73
Query: 198 -MSTP-------EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 249
++TP E L+ Q D+ N AA+ E +DIN+GCP+ + +G G
Sbjct: 74 GIATPFQTCPALERGRLVYQIGTGDATNALRAAQHVERDVAAVDINMGCPKRFSLQGGMG 133
Query: 250 AYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309
A L + ++V +LR+ + VPVS KIR+ + +TVE+AR +E+AG L+VH R V
Sbjct: 134 AALLKQPQVAADIVGTLRRNLSVPVSVKIRLLETPGETVEFARRMEKAGACALSVHVRKV 193
Query: 310 DQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
+ A WE + V A+ IPVIANG++ AD+ A +G + VM A L N
Sbjct: 194 GDTPASK--ARWEELRPVVDAVNIPVIANGDVYTRADMAGIKALSGCSSVMLARPALLNC 251
Query: 370 ALFT--GQTRPAWELASEYLDLVAQYPVRLQYARGHVFNM 407
++F G P E+ +YL +Y Q A+ V M
Sbjct: 252 SIFKPDGHVLPLKEVIQQYLRECFRYDSVYQNAKYTVMEM 291
>gi|154484004|ref|ZP_02026452.1| hypothetical protein EUBVEN_01712 [Eubacterium ventriosum ATCC
27560]
gi|149735046|gb|EDM50932.1| TIM-barrel protein, nifR3 family [Eubacterium ventriosum ATCC
27560]
Length = 317
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/223 (35%), Positives = 120/223 (53%), Gaps = 5/223 (2%)
Query: 153 LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCG 212
L PM ++LP+RLL + G + YT MVSA + K +L + P+ +Q G
Sbjct: 14 LGPMAGVTDLPFRLLCKEQGCGMLYTEMVSAKAILYKNKNTNILLNIDKAEHPIAVQLFG 73
Query: 213 NDSKNLTE-AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
+D + E AK+AE CD IDIN+GCP H G+YL L+ +++ + +A++
Sbjct: 74 SDPDIMAEIGAKVAEGPCDFIDINMGCPVPKIVNNHEGSYLLTQPKLVEQILTKMVKAIK 133
Query: 272 VPVSCKIRI-YQDVN-KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK 329
PV+ K+R ++D + E AR+ E G +AVHGRT +Q +G A W+ I V++
Sbjct: 134 KPVTIKVRKGFKDGEIQAPEIARIAESCGVSAIAVHGRTREQ--YYSGKADWDVIKEVKE 191
Query: 330 ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
A+ IPVI NG+I D +A TG G+M NP +F
Sbjct: 192 AVKIPVIGNGDIFSAKDAKAMKEYTGCDGLMVGRAARGNPWIF 234
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 27/233 (11%)
Query: 83 LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTI 142
L PM ++LP+RLL + G + YT MVSA + K +L + P+ +Q
Sbjct: 14 LGPMAGVTDLPFRLLCKEQGCGMLYTEMVSAKAILYKNKNTNILLNIDKAEHPIAVQ--- 70
Query: 143 FPRLGSPRFILAPM-VDASELPWRLLSRRYGSHLCYTP-MVSAHQ---FIADKKLRQEIL 197
GS I+A + +E P + G C P +V+ H+ + KL ++IL
Sbjct: 71 --LFGSDPDIMAEIGAKVAEGPCDFIDINMG---CPVPKIVNNHEGSYLLTQPKLVEQIL 125
Query: 198 --MSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
M +P+ I+ +A ++A + ++ + +Y + D
Sbjct: 126 TKMVKAIKKPVTIKVRKGFKDGEIQAPEIARI-AESCGVSAIAVHGRTREQYYSG--KAD 182
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308
W +++ +++AV++PV D+ + M E GC L V GR
Sbjct: 183 W----DVIKEVKEAVKIPVIGN----GDIFSAKDAKAMKEYTGCDGLMV-GRA 226
>gi|197301311|ref|ZP_03166396.1| hypothetical protein RUMLAC_00042 [Ruminococcus lactaris ATCC
29176]
gi|197299629|gb|EDY34144.1| TIM-barrel protein, nifR3 family [Ruminococcus lactaris ATCC 29176]
Length = 320
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 131/226 (57%), Gaps = 5/226 (2%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
+IL PM ++LP+RLL + G+ L MVSA + + K + +L P+++P+ +QF
Sbjct: 15 YILGPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAILYNNKNTETLLEIHPDEQPVSLQF 74
Query: 211 CGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G+D + ++E AK E D +DIN+GCP + G+ L + L ++S++ +A
Sbjct: 75 FGSDPQIMSEMAKRVEERPFDIMDINMGCPVPKVVKNGEGSALMKNPKLAHEIISAMVKA 134
Query: 270 VQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
++ PV+ KIR D N VE A++ E AG +AVHGRT +Q +G A WE I V
Sbjct: 135 IRKPVTVKIRKGFDDNCINAVEMAKIAEDAGAAAIAVHGRTREQ--YYSGKADWEIIRQV 192
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
++A++IPVI NG++ +A + +TG GVM A G NP +F+
Sbjct: 193 KEAVSIPVIGNGDVTSPERADAMVKETGCDGVMIARGAQGNPWIFS 238
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 95/226 (42%), Gaps = 26/226 (11%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
+IL PM ++LP+RLL + G+ L MVSA + + K + +L P+++P+ +Q
Sbjct: 15 YILGPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAILYNNKNTETLLEIHPDEQPVSLQ- 73
Query: 141 TIFPRLGSPRFILAPMVD-ASELPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQE 195
GS I++ M E P+ ++ G C P V + + KL E
Sbjct: 74 ----FFGSDPQIMSEMAKRVEERPFDIMDINMG---CPVPKVVKNGEGSALMKNPKLAHE 126
Query: 196 IL--MSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 253
I+ M +P+ ++ N A ++A+ D I ++ + G +
Sbjct: 127 IISAMVKAIRKPVTVKIRKGFDDNCINAVEMAKIAEDAGAAAIAVHGRTREQYYSG---K 183
Query: 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC 299
DW ++ +++AV +PV DV M++ GC
Sbjct: 184 ADW----EIIRQVKEAVSIPVIGN----GDVTSPERADAMVKETGC 221
>gi|223992807|ref|XP_002286087.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977402|gb|EED95728.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 451
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 169/383 (44%), Gaps = 75/383 (19%)
Query: 137 IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRR-YGSHLCYTPMVSAHQFIADKKLRQE 195
I + + RLGSP+ ILAPMV S+LP+RL+ + Y L YT M+ A F AD + E
Sbjct: 12 ISSTSFYERLGSPKHILAPMVAQSDLPFRLMCEQLYNVDLSYTQMIHASNF-AD--VNGE 68
Query: 196 ILMSTPED--RPLIIQFCGNDSKNLTEAAK--LAEPHCDG------------IDINIGCP 239
+ D +P ++Q +D EAA L + G D+N+GCP
Sbjct: 69 PFRTNHLDVIKPTVVQIAAHDPDVAVEAALMILEKSESTGSSVNGSISPVVAFDLNLGCP 128
Query: 240 QMVAKRGHYGAYLQDDWPLLT-NLVSSLRQAV--QVPVSCKIRI---YQDVNKTV----- 288
Q +A++G YGA+L D++P +++ LR + ++ V+ K+R+ D
Sbjct: 129 QGIARKGKYGAFLHDEYPQSAYDVLIKLRAMLPREIGVTAKVRLPPTKADAEAGKLGNMS 188
Query: 289 ---------EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTI------ 333
E + L G L+ VHGRT + + G A W I + +
Sbjct: 189 ELSHLPTPEERIQRLIDCGVDLITVHGRTRFENKVAVGKADWNSIERCVQTARVYSGNAQ 248
Query: 334 -PVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT-------------GQTRPA 379
P+IANG I+ DVE CL QT +GVM++E L NP LF+ G
Sbjct: 249 YPLIANGGIETYNDVEKCLEQTQASGVMSSESLLENPGLFSNLSEETACDTVARGMLERQ 308
Query: 380 WELASEYLDLVAQYP-------VR---LQYARGHVFNMCHHLLTLPENSDVRLLVGKT-- 427
A YLD +P R R H+F + H L EN ++R L+G
Sbjct: 309 LGYACMYLDYATLFPPIPGSLGARGGCFNVIRTHLFKILHRY--LEENPELRSLLGDNGA 366
Query: 428 -NHIKDLRKAVDMLRERFIDYHE 449
+ IK R+ V LR R+ E
Sbjct: 367 LSTIKQGRELVQELRSRYSKLDE 389
Score = 45.8 bits (107), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 65 SSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRR-YGSHLCYTPMVSAHQF 116
++ + + + +LGSP+ ILAPMV S+LP+RL+ + Y L YT M+ A F
Sbjct: 10 TAISSTSFYERLGSPKHILAPMVAQSDLPFRLMCEQLYNVDLSYTQMIHASNF 62
>gi|160934849|ref|ZP_02082235.1| hypothetical protein CLOLEP_03724 [Clostridium leptum DSM 753]
gi|156866302|gb|EDO59674.1| TIM-barrel protein, nifR3 family [Clostridium leptum DSM 753]
Length = 330
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 147/295 (49%), Gaps = 12/295 (4%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM ++ +R + +G+ + MVSA K +E++ + ++RP IQ
Sbjct: 14 VLAPMAGTADRAFREICASFGAAYVISEMVSAKALTYGDKKSRELMELSSQERPAAIQLF 73
Query: 212 GNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G+D + + EAA LA E + ID+N+GCP G+ L L +V ++++AV
Sbjct: 74 GDDPQTMAEAAVLALEYQPEIIDLNMGCPAPKITSNGCGSALMKKPALCGRIVEAVKKAV 133
Query: 271 QVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
VPV+ KIR D VE A++ E AG +AVHGRT +Q M A WE I V+
Sbjct: 134 PVPVTVKIRKGWDTRTVNAVEVAKICENAGADAIAVHGRTREQ--MYAPSADWESIRQVK 191
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+A++IPVI NG++ D A L QTG VM G L NP +F Q AW L S+ +
Sbjct: 192 EAVSIPVIGNGDVFTAEDAAAMLEQTGCDLVMIGRGALGNPWIF--QQVNAW-LGSQ-VQ 247
Query: 389 LVAQYPVRLQYAR-GHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRE 442
L A P Y H+ +C + + R G ++K L+ A RE
Sbjct: 248 LPAPGPAEKMYGMLRHIRLLCDYKGEEHGMREARKHAGW--YLKGLKGAAGFRRE 300
>gi|86357567|ref|YP_469459.1| tRNA-dihydrouridine synthase [Rhizobium etli CFN 42]
gi|1171717|sp|P41504.1|DUS_RHILP RecName: Full=Probable tRNA-dihydrouridine synthase
gi|581522|emb|CAA50567.1| unnamed protein product [Rhizobium phaseoli]
gi|86281669|gb|ABC90732.1| probable tRNA-dihydrouridine synthase protein [Rhizobium etli CFN
42]
Length = 317
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 143/268 (53%), Gaps = 16/268 (5%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R +LAPM +++P+R L+ R+G+ L T MV++ + + D L + RP ++Q
Sbjct: 6 RVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRELVNDTAESWSRLKAAGF-RPHMVQ 64
Query: 210 FCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G ++ + EAAK+A H D IDIN+GCP G+ G+ L D L+ + +
Sbjct: 65 LAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGYSGSALMRDPDHALGLIEATVK 124
Query: 269 AVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV +PV+ K+R+ D N + AR E +G QL+ +HGRT Q G A W+ I A
Sbjct: 125 AVDIPVTLKMRLGWDENSINAPDIARRAEASGIQLVTIHGRTRMQ--FYEGRADWDAIRA 182
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA---EGNLYNPALFTGQTRPAWE-- 381
VR+ +++P+IANG+++ D + L ++G VM +G ++ + G P E
Sbjct: 183 VREVISVPLIANGDVETAHDAQEILRRSGADAVMIGRGCQGRPWHAGVLAGAAEPRREDI 242
Query: 382 --LASEYLDLVAQY---PVRLQYARGHV 404
+A E+ ++ + V +++AR H+
Sbjct: 243 ADIAVEHYRMMLDFYGEAVAIRHARKHL 270
>gi|62259886|gb|AAX77872.1| unknown protein [synthetic construct]
Length = 362
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 164/318 (51%), Gaps = 25/318 (7%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM + +R + + +G+ L YT MVS + E+L ++PL IQ
Sbjct: 41 VLAPMAGFCDSAFRTICKEHGAGLIYTEMVSNKAVVEHNWETMEMLYMENSEKPLGIQIF 100
Query: 212 GNDSKNLTEAAK-LAE-PHCDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G D + A K +AE CD +DIN+GCP VAK+ GA L D + +++++ +
Sbjct: 101 GTDINSFVGATKYIAENTECDFLDINMGCPMPKVAKKLQAGAALLKDVNRIHEILTAVVK 160
Query: 269 AVQVPVSCKIRI---YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV PV+ K+RI Q++N +E A+ + AG +A+HGRT +Q M TG A+W+ I
Sbjct: 161 AVHKPVTVKMRIGWDEQNIN-AIEVAKACQDAGVSAIAIHGRTREQ--MYTGKANWDIIR 217
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTR 377
VRKA+ VI NG++ C +A + TGV VM + NP +F TG+
Sbjct: 218 DVRKAVDTVVIGNGDVFCPHSAKAMMEHTGVDAVMVGRASRGNPWIFRQIAEYLNTGELI 277
Query: 378 PAWELASEYLDLVAQY---PVRLQYARGHVFNMCHH----LLTLPENSDVRLLVGKTNHI 430
P E +D++ ++ ++L+ A+ V + H L LP + + R+ + + H
Sbjct: 278 PP-PTPVERVDVLEEHLRRLIKLKTAKVAVKEIRTHASFYLQDLPNSKEFRMKLNQLEHE 336
Query: 431 KDLRKAVDMLRERFIDYH 448
+++ K ++ ++ ++
Sbjct: 337 QEIFKVLEEYKKSLYKFY 354
>gi|373456867|ref|ZP_09548634.1| TIM-barrel protein, nifR3 family [Caldithrix abyssi DSM 13497]
gi|371718531|gb|EHO40302.1| TIM-barrel protein, nifR3 family [Caldithrix abyssi DSM 13497]
Length = 347
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 142/275 (51%), Gaps = 17/275 (6%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
LAPM + S+ P+R++ + G+ + Y+ +S+ I + + + ++ P+ IQ
Sbjct: 14 LFLAPMENVSDYPFRMICKELGADVVYSEFISSEALIREAEKAFLKMTIKAQEHPIGIQI 73
Query: 211 CGNDSKNLTEAAKLAEPHC-DGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
GN + + +AA+LAE D IDIN GCP + VA +G GA L D PL+ + +++ +
Sbjct: 74 YGNRVEAMVKAAQLAEEKGPDFIDINFGCPVKKVALKGA-GAGLLRDIPLMVKISAAVAR 132
Query: 269 AVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV +PV+ K R+ D + + V+ A+ LE G + + +H RT Q G A WE I
Sbjct: 133 AVSLPVTAKTRLGWDAHSIQIVDVAKRLEDVGIEAITLHARTRAQG--YKGQADWEWIRK 190
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRP 378
V++A++IPVI NG++ + QTG VM G + NP LF TG+ P
Sbjct: 191 VKEAVSIPVIGNGDVTTPQLAKQMFEQTGCDAVMIGRGAINNPWLFRDARAYIETGEIPP 250
Query: 379 AWELASEYLDLVAQYPVRLQYA--RGHVFNMCHHL 411
LA L+ Y + ++Y R V M HL
Sbjct: 251 PPTLAERVELLIRHYRLSVEYKGERRGVIEMRKHL 285
>gi|385792955|ref|YP_005825931.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|332678280|gb|AEE87409.1| tRNA dihydrouridine synthase B [Francisella cf. novicida Fx1]
Length = 325
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 163/315 (51%), Gaps = 25/315 (7%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM + +R + + +G+ L YT MVS + E+L ++PL IQ
Sbjct: 15 VLAPMAGFCDSAFRTICKEHGAGLIYTEMVSNKAVVERNWETMEMLYMENSEKPLGIQIF 74
Query: 212 GNDSKNLTEAAK-LAE-PHCDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G D + A K +AE CD +DIN+GCP VAK+ GA L D + +++++ +
Sbjct: 75 GTDIDSFVGATKYIAENTECDFLDINMGCPMPKVAKKLQAGAALLKDVNRIHEILTAVVK 134
Query: 269 AVQVPVSCKIRI---YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV PV+ K+RI Q++N +E A+ + AG +A+HGRT +Q M TG A+W+ I
Sbjct: 135 AVHKPVTVKMRIGWDEQNIN-AIEVAKACQDAGVSAIAIHGRTREQ--MYTGKANWDIIR 191
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTR 377
VRKA+ VI NG++ C +A + TGV VM + NP +F TG+
Sbjct: 192 DVRKAVDTVVIGNGDVFCPHSAKAMIEHTGVDAVMVGRASRGNPWIFRQIAEYLNTGELI 251
Query: 378 PAWELASEYLDLVAQY---PVRLQYARGHVFNMCHH----LLTLPENSDVRLLVGKTNHI 430
P E +D++ ++ ++L+ A+ V + H L LP + + R+ + + H
Sbjct: 252 PP-PTPVERVDVLEEHLRRLIKLKTAKVAVKEIRTHASFYLQDLPNSKEFRMKLNQLEHE 310
Query: 431 KDLRKAVDMLRERFI 445
+++ + ++ + F+
Sbjct: 311 QEIFRVLEDYKNSFV 325
>gi|254374394|ref|ZP_04989876.1| hypothetical protein FTDG_00561 [Francisella novicida GA99-3548]
gi|151572114|gb|EDN37768.1| hypothetical protein FTDG_00561 [Francisella novicida GA99-3548]
Length = 324
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 157/302 (51%), Gaps = 23/302 (7%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM + +R + + +G+ L YT MVS + E+L ++PL IQ
Sbjct: 15 VLAPMAGFCDSAFRTICKEHGAGLIYTEMVSNKAVVERNWETMEMLYMENSEKPLGIQIF 74
Query: 212 GNDSKNLTEAAK-LAE-PHCDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G D + A K +AE CD +DIN+GCP VAK+ GA L D + +++++ +
Sbjct: 75 GTDIDSFVGATKYIAENTECDFLDINMGCPMPKVAKKLQAGAALLKDVNRIHEILTAVVK 134
Query: 269 AVQVPVSCKIRI-YQDVN-KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV PV+ K+RI + D N +E A+ E AG +A+HGRT +Q M TG A+W+ I
Sbjct: 135 AVHKPVTVKMRIGWDDKNINAIEVAKACEDAGVSAIAIHGRTREQ--MYTGKANWDIIRD 192
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRP 378
VRKA+ I VI NG++ C +A + TGV VM + NP +F TG+ P
Sbjct: 193 VRKAVDIVVIGNGDVFCPHSAKAMIEHTGVDAVMVGRASRGNPWIFRQIAKYLNTGELIP 252
Query: 379 AWELASEYLDLVAQY---PVRLQYARGHVFNMCHH----LLTLPENSDVRLLVGKTNHIK 431
E +D++ ++ ++L+ A+ V + H L LP + + R+ + + H +
Sbjct: 253 P-PTPVERVDVLEEHLRRLIKLKTAKVAVKEIRTHASFYLQDLPNSKEFRMKLNQLEHEQ 311
Query: 432 DL 433
++
Sbjct: 312 EI 313
>gi|208779377|ref|ZP_03246723.1| putative TIM-barrel protein, nifR3 family [Francisella novicida
FTG]
gi|208745177|gb|EDZ91475.1| putative TIM-barrel protein, nifR3 family [Francisella novicida
FTG]
Length = 328
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 98/308 (31%), Positives = 160/308 (51%), Gaps = 25/308 (8%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM + +R + + +G+ L YT MVS + E+L ++PL IQ
Sbjct: 15 VLAPMAGFCDSAFRTICKEHGAGLIYTEMVSNKAVVERNWETMEMLYMENSEKPLGIQIF 74
Query: 212 GNDSKNLTEAAK-LAE-PHCDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G D + A K +AE CD +DIN+GCP VAK+ GA L D + +++++ +
Sbjct: 75 GTDIDSFVGATKYIAENTECDFLDINMGCPMPKVAKKLQAGAALLKDVNRIHEILTAVVK 134
Query: 269 AVQVPVSCKIRI---YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV PV+ K+RI Q++N +E A+ E AG +A+HGRT +Q M TG A+W+ I
Sbjct: 135 AVHKPVTVKMRIGWNEQNIN-AIEVAKACEDAGVSAIAIHGRTREQ--MYTGKANWDIIR 191
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTR 377
VRKA+ VI NG++ C +A + TGV VM + NP +F TG+
Sbjct: 192 DVRKAVDTVVIGNGDVFCPHSAKAMIEHTGVDAVMVGRASRGNPWIFRQIAEYLNTGELI 251
Query: 378 PAWELASEYLDLVAQY---PVRLQYARGHVFNMCHH----LLTLPENSDVRLLVGKTNHI 430
P E +D++ ++ ++L+ A+ V + H L LP + + R+ + + H
Sbjct: 252 PP-PTPVERVDVLEEHLRRLIKLKTAKVAVKEIRTHASFYLQDLPNSKEFRMKLNQLEHE 310
Query: 431 KDLRKAVD 438
+++ K ++
Sbjct: 311 QEIFKVLE 318
>gi|282858670|ref|ZP_06267828.1| TIM-barrel protein, nifR3 family [Prevotella bivia JCVIHMP010]
gi|424900061|ref|ZP_18323603.1| putative TIM-barrel protein, nifR3 family [Prevotella bivia DSM
20514]
gi|282588588|gb|EFB93735.1| TIM-barrel protein, nifR3 family [Prevotella bivia JCVIHMP010]
gi|388592261|gb|EIM32500.1| putative TIM-barrel protein, nifR3 family [Prevotella bivia DSM
20514]
Length = 325
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 125/236 (52%), Gaps = 9/236 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D +++ +R + +RYG+ + YT VSA I K ++ E+RP
Sbjct: 8 LGERPLFLAPMEDVTDIGFRKMCKRYGAAMVYTEFVSADAIIRSIKSTLSKMVIDDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHC-DGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
IQ GN+ +++ EAAK+ E D IDIN GCP + VA +G G+ + + PLL ++
Sbjct: 68 TGIQIYGNNVESMVEAAKIVEEAKPDVIDINFGCPVKKVAGKGA-GSGMLKNIPLLLDIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV VPV+ K R+ D N V E A ++ G + L +HGRT Q M TG A W
Sbjct: 127 REVVKAVNVPVTVKTRLGWDENNLVITELAEQIQDCGAKALTIHGRTRAQ--MYTGNADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375
I V+K + IP+I NG+I + D + GV VM P LF+ +
Sbjct: 185 TLIGEVKKNPRIHIPIIGNGDITSVKDAYEHFDKYGVDAVMIGRATFGCPWLFSKE 240
Score = 45.1 bits (105), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
LG LAPM D +++ +R + +RYG+ + YT VSA I K ++ E+R
Sbjct: 7 DLGERPLFLAPMEDVTDIGFRKMCKRYGAAMVYTEFVSADAIIRSIKSTLSKMVIDDEER 66
Query: 135 PLIIQ 139
P IQ
Sbjct: 67 PTGIQ 71
>gi|222152139|ref|YP_002561299.1| hypothetical protein MCCL_1896 [Macrococcus caseolyticus JCSC5402]
gi|222121268|dbj|BAH18603.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 334
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 105/325 (32%), Positives = 159/325 (48%), Gaps = 27/325 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ +LAPM +RL + +G+ L MVS + + + ++L +RPL +Q
Sbjct: 12 KVVLAPMAGVCNAAFRLTVKEFGAGLVCAEMVSDKAILFNNEKTMKMLYIDENERPLSLQ 71
Query: 210 FCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G + + L EAAK + + D IDIN+GCP + GA D P + +VS++
Sbjct: 72 IFGGEKETLVEAAKYVDQNTTADIIDINMGCPVSKIIKCEAGARWLLDPPKIYEMVSAVV 131
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+AV PV+ K+RI D VE A+M+E+AG +AVHGRT Q M G A W+ I
Sbjct: 132 EAVNKPVTVKMRIGWDDEHIYAVENAKMIEKAGASAIAVHGRTRVQ--MYEGHADWDVIR 189
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTR 377
V++A++IPVI NG++ + L +TGV VM L NP + TG+
Sbjct: 190 QVKEAVSIPVIGNGDVTSPELAKKMLDETGVDAVMIGREALGNPWMIYRTVHYLETGELM 249
Query: 378 PAWELASEYLDLVAQYPVRLQYARGH---VFNMCHH----LLTLPENSDVRLLVGKTNHI 430
P L SE +D+ + RL +G V M H L + N R L+ +
Sbjct: 250 PE-PLISEKMDVAVLHLDRLINLKGEKVAVMEMRKHASWYLKGIRGNGKARKLINQAETR 308
Query: 431 KDLRKAVDMLR--ERFIDYHEGRKL 453
+L VD+LR E+ ++ E + L
Sbjct: 309 DEL---VDILRTFEQEVEASESKIL 330
>gi|346316684|ref|ZP_08858187.1| hypothetical protein HMPREF9022_03844 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345902880|gb|EGX72653.1| hypothetical protein HMPREF9022_03844 [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 338
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 6/227 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ ++APM S +R++ + +G+ L YT MVS D + + ++ PL +Q
Sbjct: 16 QVVIAPMAGISNPAFRVICKEFGAGLIYTEMVSDKALYYDNEKTVGMTDVEEQEHPLAMQ 75
Query: 210 FCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G+D + + AAK + CD IDIN+GCP + G+ L D + ++
Sbjct: 76 IFGHDIETMVYAAKFLDEKTDCDIIDINMGCPVTKIVKSFAGSALMKDVDHAVEMSRAVI 135
Query: 268 QAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
Q+V+ PV+ K+RI D+++ +E AR LE G Q LAVHGRT Q M G A W +I
Sbjct: 136 QSVKKPVTVKMRIGWDLDQITCLELARGLEAVGVQALAVHGRTRKQ--MYEGTADWSYIK 193
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
V++A++IPV+ NG+++ D + L +TG VM G L +P L
Sbjct: 194 KVKEAVSIPVMGNGDVRSGEDAKRMLKETGCDAVMIGRGVLGDPWLI 240
>gi|312109228|ref|YP_003987544.1| hypothetical protein GY4MC1_0077 [Geobacillus sp. Y4.1MC1]
gi|311214329|gb|ADP72933.1| TIM-barrel protein, nifR3 family [Geobacillus sp. Y4.1MC1]
Length = 333
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 120/224 (53%), Gaps = 6/224 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R +LAPM +RL + +G+ L MVS + + + +L ++PL +Q
Sbjct: 12 RVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKGIVYNNEKTLNMLYIDEREKPLSLQ 71
Query: 210 FCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G + + L EAAK + H D IDIN+GCP + GA D + ++V+++
Sbjct: 72 IFGGEKETLVEAAKFVDKHTNADIIDINMGCPVPKVTKCDAGAKWLLDPNKIYDVVAAIV 131
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV+ PV+ K+RI D N VE A+ +ERAG + +AVHGRT Q M G A W I
Sbjct: 132 DAVEKPVTVKMRIGWDENHIYAVENAQAVERAGGKAVAVHGRTRVQ--MYEGKADWNIIK 189
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
V++A+ IPVI NG+++ D + L +TGV GVM L NP
Sbjct: 190 QVKEAVNIPVIGNGDVKTPQDAKRMLEETGVDGVMIGRAALGNP 233
>gi|317478240|ref|ZP_07937405.1| dihydrouridine synthase [Bacteroides sp. 4_1_36]
gi|423304598|ref|ZP_17282597.1| tRNA dihydrouridine synthase A [Bacteroides uniformis CL03T00C23]
gi|423310288|ref|ZP_17288272.1| tRNA dihydrouridine synthase A [Bacteroides uniformis CL03T12C37]
gi|316905547|gb|EFV27336.1| dihydrouridine synthase [Bacteroides sp. 4_1_36]
gi|392682484|gb|EIY75829.1| tRNA dihydrouridine synthase A [Bacteroides uniformis CL03T12C37]
gi|392684048|gb|EIY77380.1| tRNA dihydrouridine synthase A [Bacteroides uniformis CL03T00C23]
Length = 326
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 143/288 (49%), Gaps = 23/288 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D ++ +RL+ + +G+ + YT VSA I Q+ L + E+RP
Sbjct: 8 LGPRPVFLAPMEDVTDPAFRLMCKHFGADMVYTEFVSADALIRSVGKTQQKLNISDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D+ + EAA++ E H D +DIN GCP + VA +G LQ + PL+ +
Sbjct: 68 VAIQIYGRDTATMVEAARIVEQAHPDTLDINFGCPVKRVAGKGAGAGMLQ-NIPLMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
++ AV++PV+ K R+ D N V+ A L+ G L +HGRT Q M TG A W
Sbjct: 127 RAVVDAVKIPVTVKTRLGWDANSKIIVDLAEQLQDCGIAALTIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I V+K + IP+I NG+I + C GV +M + P F
Sbjct: 185 TLIGEVKKNPRMHIPIIGNGDITTPQRAKECFDLYGVDAIMIGRASFGRPWFFKEVKHYL 244
Query: 373 -TGQTRPAWELASEY-LDLVAQY---PVRLQYARGHVFNMCHHLLTLP 415
TG+ P L+SE+ L+++ Q V L R + ++ HL P
Sbjct: 245 ETGEELPP--LSSEWRLNVLRQEVEDSVNLLDERRGILHVRRHLAASP 290
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LG LAPM D ++ +RL+ + +G+ + YT VSA I Q+ L + E+RP
Sbjct: 8 LGPRPVFLAPMEDVTDPAFRLMCKHFGADMVYTEFVSADALIRSVGKTQQKLNISDEERP 67
Query: 136 LIIQ 139
+ IQ
Sbjct: 68 VAIQ 71
>gi|325281330|ref|YP_004253872.1| TIM-barrel protein, nifR3 family [Odoribacter splanchnicus DSM
20712]
gi|324313139|gb|ADY33692.1| TIM-barrel protein, nifR3 family [Odoribacter splanchnicus DSM
20712]
Length = 333
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 162/324 (50%), Gaps = 29/324 (8%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI--ADKKLRQEILMSTPED 203
+G ILAPM D + P+R ++YG+ Y+ VSA + +K L++ + T +
Sbjct: 8 VGDRPLILAPMEDVTNPPFRKFCKKYGADWLYSEFVSADALVRSVNKSLKKLTIDET--E 65
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTN 261
RP+ IQ G ++ EAAK+ E D IDIN GCP + VA++G GA + D PL+
Sbjct: 66 RPVTIQIYGRFIDSMVEAAKIVEEVRPDFIDINFGCPVKRVAQKGA-GAGMLKDIPLMVE 124
Query: 262 LVSSLRQAVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLA 319
+ + QAV++PV+ K R+ D + + A L+ G Q LA+HGRT Q M +G A
Sbjct: 125 MTRQIVQAVKIPVTAKTRLGWDCEHIIIEDIAERLQDVGIQALAIHGRTRSQ--MYSGEA 182
Query: 320 SWEHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF----- 372
WE I V+ + IP++ NG+I + + GV GVM + +P +F
Sbjct: 183 DWEPIARVKNNPRIKIPILGNGDITSPEKAKEAFERYGVDGVMIGRATIGHPWIFKQIRH 242
Query: 373 ---TGQTRPAWELASEYLDLVAQYPVRLQY---ARGHVFNMCHHLLT----LPENSDVRL 422
TG+ P + + + Q + +++ RG + +M H+ + LP D+R+
Sbjct: 243 YFETGELLPDLSVKEQIEVIKEQILLSVEWIDEVRG-LLHMRRHMASMFKGLPHFRDLRI 301
Query: 423 LVGKTNHIKDLRKAVDMLRERFID 446
+ + I L + D + +R+ D
Sbjct: 302 RMLQAPTIDVLWEVFDEIEKRYSD 325
>gi|89256322|ref|YP_513684.1| Nif3 family protein [Francisella tularensis subsp. holarctica LVS]
gi|156502395|ref|YP_001428460.1| tRNA-dihydrouridine synthase, TIM-barrel family protein
[Francisella tularensis subsp. holarctica FTNF002-00]
gi|254367656|ref|ZP_04983677.1| nif3 family protein [Francisella tularensis subsp. holarctica 257]
gi|290952884|ref|ZP_06557505.1| tRNA-dihydrouridine synthase, TIM-barrel family protein
[Francisella tularensis subsp. holarctica URFT1]
gi|422938725|ref|YP_007011872.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
holarctica FSC200]
gi|423050673|ref|YP_007009107.1| tRNA-dihydrouridine synthase, TIM-barrel family protein
[Francisella tularensis subsp. holarctica F92]
gi|89144153|emb|CAJ79414.1| Nif3 family protein [Francisella tularensis subsp. holarctica LVS]
gi|134253467|gb|EBA52561.1| nif3 family protein [Francisella tularensis subsp. holarctica 257]
gi|156252998|gb|ABU61504.1| tRNA-dihydrouridine synthase, TIM-barrel family protein
[Francisella tularensis subsp. holarctica FTNF002-00]
gi|407293876|gb|AFT92782.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
holarctica FSC200]
gi|421951395|gb|AFX70644.1| tRNA-dihydrouridine synthase, TIM-barrel family protein
[Francisella tularensis subsp. holarctica F92]
Length = 327
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 162/317 (51%), Gaps = 25/317 (7%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM + +R + + YG+ + Y MVS + E+L ++PL IQ
Sbjct: 15 VLAPMAGFCDSAFRTICKEYGAGMIYMEMVSNKAVVERNWETMEMLYMENSEKPLGIQIF 74
Query: 212 GNDSKNLTEAAK-LAE-PHCDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G D + A K +AE CD +DINIGCP VAK+ GA L D + +++++ +
Sbjct: 75 GTDIDSFVGATKYIAENTECDFLDINIGCPMPKVAKKLQAGAALLKDVNRIHEILTAVVK 134
Query: 269 AVQVPVSCKIRI---YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV PV+ K+RI Q++N +E A+ + AG +A+HGRT +Q M TG A+W+ I
Sbjct: 135 AVHKPVTVKMRIGWDEQNIN-AIEVAKACQDAGVSAIAIHGRTREQ--MYTGKANWDIIR 191
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTR 377
VRKA+ VI NG++ C +A + TGV VM + NP +F TG+
Sbjct: 192 DVRKAVDTVVIGNGDVFCPHSAKAMMEHTGVDAVMVGRASRGNPWIFRQIAEYLNTGELI 251
Query: 378 PAWELASEYLDLVAQY---PVRLQYARGHVFNMCHH----LLTLPENSDVRLLVGKTNHI 430
P E +D++ ++ ++L+ A+ V + H L LP + + R+ + + H
Sbjct: 252 PP-PTPVERVDVLEEHLRRLIKLKTAKVAVKEIRTHASFYLQDLPNSKEFRMKLNQLEHE 310
Query: 431 KDLRKAVDMLRERFIDY 447
+++ K ++ ++ +
Sbjct: 311 QEIFKVLEEYKKSLYKF 327
>gi|336233621|ref|YP_004586237.1| nifR3 family TIM-barrel protein [Geobacillus thermoglucosidasius
C56-YS93]
gi|335360476|gb|AEH46156.1| TIM-barrel protein, nifR3 family [Geobacillus thermoglucosidasius
C56-YS93]
Length = 333
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 120/224 (53%), Gaps = 6/224 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R +LAPM +RL + +G+ L MVS + + + +L ++PL +Q
Sbjct: 12 RVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKGIVYNNEKTLNMLYIDEREKPLSLQ 71
Query: 210 FCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G + + L EAAK + H D IDIN+GCP + GA D + ++V+++
Sbjct: 72 IFGGEKETLVEAAKFVDKHTNADIIDINMGCPVPKVTKCDAGAKWLLDPNKIYDVVAAIV 131
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV+ PV+ K+RI D N VE A+ +ERAG + +AVHGRT Q M G A W I
Sbjct: 132 DAVEKPVTVKMRIGWDENHIYAVENAQAVERAGGKAVAVHGRTRVQ--MYEGKADWNIIK 189
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
V++A+ IPVI NG+++ D + L +TGV GVM L NP
Sbjct: 190 QVKEAVNIPVIGNGDVKTPQDAKRMLEETGVDGVMIGRAALGNP 233
>gi|303237786|ref|ZP_07324344.1| TIM-barrel protein, nifR3 family [Prevotella disiens FB035-09AN]
gi|302482011|gb|EFL45048.1| TIM-barrel protein, nifR3 family [Prevotella disiens FB035-09AN]
Length = 321
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 123/234 (52%), Gaps = 9/234 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
G LAPM D +++ +R + +R+G+ + YT VSA I K ++ E+RP
Sbjct: 8 FGERPLFLAPMEDVTDIGFRKMCKRFGAAMVYTEFVSADAVIRSIKSTLNKIVIDDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D ++ EAAK+ E H D IDIN GCP + VA +G G+ + + PLL +
Sbjct: 68 VGIQIYGKDVASMVEAAKIVEEVHPDVIDINFGCPVKKVANKG-AGSGMLRNIPLLLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV+ PV+ K R+ D N + + A L+ G Q L +HGRT Q M TG A W
Sbjct: 127 REVVKAVKTPVTVKTRLGWDDNNLIITDLAEQLQNCGIQALTIHGRTRAQ--MYTGNADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
I V+ + IP+I NG+I+ +AD + GV VM P LF+
Sbjct: 185 TLIGEVKNNPRIHIPIIGNGDIENIADAHKHFDKYGVDAVMIGRATFGCPWLFS 238
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
G LAPM D +++ +R + +R+G+ + YT VSA I K ++ E+R
Sbjct: 7 DFGERPLFLAPMEDVTDIGFRKMCKRFGAAMVYTEFVSADAVIRSIKSTLNKIVIDDEER 66
Query: 135 PLIIQ 139
P+ IQ
Sbjct: 67 PVGIQ 71
>gi|56707655|ref|YP_169551.1| Nif3 family protein [Francisella tularensis subsp. tularensis SCHU
S4]
gi|110670126|ref|YP_666683.1| Nif3 family protein [Francisella tularensis subsp. tularensis
FSC198]
gi|134302001|ref|YP_001121970.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|254370168|ref|ZP_04986174.1| Nif3 family protein [Francisella tularensis subsp. tularensis
FSC033]
gi|254874472|ref|ZP_05247182.1| nif3 family protein [Francisella tularensis subsp. tularensis
MA00-2987]
gi|379716912|ref|YP_005305248.1| tRNA dihydrouridine synthase B [Francisella tularensis subsp.
tularensis TIGB03]
gi|379725516|ref|YP_005317702.1| tRNA dihydrouridine synthase B [Francisella tularensis subsp.
tularensis TI0902]
gi|385794280|ref|YP_005830686.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
tularensis NE061598]
gi|421751810|ref|ZP_16188848.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
tularensis AS_713]
gi|421753664|ref|ZP_16190654.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
tularensis 831]
gi|421755148|ref|ZP_16192100.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
tularensis 80700075]
gi|421757390|ref|ZP_16194271.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
tularensis 80700103]
gi|421759249|ref|ZP_16196082.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
tularensis 70102010]
gi|424674568|ref|ZP_18111485.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
tularensis 70001275]
gi|56604147|emb|CAG45152.1| Nif3 family protein [Francisella tularensis subsp. tularensis SCHU
S4]
gi|110320459|emb|CAL08535.1| Nif3 family protein [Francisella tularensis subsp. tularensis
FSC198]
gi|134049778|gb|ABO46849.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|151568412|gb|EDN34066.1| Nif3 family protein [Francisella tularensis subsp. tularensis
FSC033]
gi|254840471|gb|EET18907.1| nif3 family protein [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282158815|gb|ADA78206.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
tularensis NE061598]
gi|377826965|gb|AFB80213.1| tRNA dihydrouridine synthase B [Francisella tularensis subsp.
tularensis TI0902]
gi|377828589|gb|AFB78668.1| tRNA dihydrouridine synthase B [Francisella tularensis subsp.
tularensis TIGB03]
gi|409086537|gb|EKM86654.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
tularensis 831]
gi|409086744|gb|EKM86858.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
tularensis AS_713]
gi|409088867|gb|EKM88924.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
tularensis 80700075]
gi|409090975|gb|EKM90980.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
tularensis 70102010]
gi|409092656|gb|EKM92625.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
tularensis 80700103]
gi|417434854|gb|EKT89793.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
tularensis 70001275]
Length = 327
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 163/317 (51%), Gaps = 25/317 (7%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM + +R + + +G+ L YT MVS + E+L ++PL IQ
Sbjct: 15 VLAPMAGFCDSAFRTICKEHGAGLIYTEMVSNKAVVEHNWETMEMLYMENSEKPLGIQIF 74
Query: 212 GNDSKNLTEAAK-LAE-PHCDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G D + A K +AE CD +DIN+GCP VAK+ GA L D + +++++ +
Sbjct: 75 GTDINSFVGATKYIAENTECDFLDINMGCPMPKVAKKLQAGAALLKDVNRIHEILTAVVK 134
Query: 269 AVQVPVSCKIRI---YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV PV+ K+RI Q++N +E A+ + AG +A+HGRT +Q M TG A+W+ I
Sbjct: 135 AVHKPVTVKMRIGWDEQNIN-AIEVAKACQDAGVSAIAIHGRTREQ--MYTGKANWDIIR 191
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTR 377
VRKA+ VI NG++ C +A + TGV VM + NP +F TG+
Sbjct: 192 DVRKAVDTVVIGNGDVFCPHSAKAMMEHTGVDAVMVGRASRGNPWIFRQIAEYLNTGELI 251
Query: 378 PAWELASEYLDLVAQY---PVRLQYARGHVFNMCHH----LLTLPENSDVRLLVGKTNHI 430
P E +D++ ++ ++L+ A+ V + H L LP + + R+ + + H
Sbjct: 252 PP-PTPVERVDVLEEHLRRLIKLKTAKVAVKEIRTHASFYLQDLPNSKEFRMKLNQLEHE 310
Query: 431 KDLRKAVDMLRERFIDY 447
+++ K ++ ++ +
Sbjct: 311 QEIFKVLEEYKKSLYKF 327
>gi|307942245|ref|ZP_07657596.1| tRNA-dihydrouridine synthase B [Roseibium sp. TrichSKD4]
gi|307774531|gb|EFO33741.1| tRNA-dihydrouridine synthase B [Roseibium sp. TrichSKD4]
Length = 354
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 125/227 (55%), Gaps = 14/227 (6%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI---ADKKLRQEILMSTPEDRPL-I 207
+LAPM ++LP+R + RYG+ + + MV++ F+ A+ ++R E ++ L +
Sbjct: 33 VLAPMSGVTDLPFRRFAARYGAGMVVSEMVASESFVKGDAETQMRAE-----AQNNGLHV 87
Query: 208 IQFCGNDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSL 266
+Q G +++ + EAAK +A+ D IDIN+GCP G+ G+ L D L+ +
Sbjct: 88 VQLAGREARWMGEAAKTIADLGADIIDINMGCPAKKVTSGYSGSALMRDLDHALTLIEAT 147
Query: 267 RQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
+AV VPV+ K+R+ D + E AR E AG QL+ VHGRT +Q G A W I
Sbjct: 148 VEAVDVPVTLKMRLGWDHDSINAPELARRAENAGIQLITVHGRTRNQ--FYKGTADWSAI 205
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371
AV++ +++P+IANG+ Q D LA++G VM G P L
Sbjct: 206 AAVKQEISVPLIANGDCQSYDDASEMLARSGADAVMIGRGAYGRPWL 252
>gi|187931839|ref|YP_001891824.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187712748|gb|ACD31045.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 327
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 163/317 (51%), Gaps = 25/317 (7%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM + +R + + +G+ L YT MVS + E+L ++PL IQ
Sbjct: 15 VLAPMAGFCDSAFRTICKEHGAGLIYTEMVSNKAVVERNWETMEMLYMENSEKPLGIQIF 74
Query: 212 GNDSKNLTEAAK-LAE-PHCDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G D + A K +AE CD +DIN+GCP VAK+ GA L D + +++++ +
Sbjct: 75 GTDINSFVGATKYIAENTECDFLDINMGCPMPKVAKKLQAGAALLKDVNRIHEILTAVVK 134
Query: 269 AVQVPVSCKIRI---YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV PV+ K+RI Q++N +E A+ + AG +A+HGRT +Q M TG A+W+ I
Sbjct: 135 AVHKPVTVKMRIGWDEQNIN-AIEVAKACQDAGVSAIAIHGRTREQ--MYTGKANWDIIR 191
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTR 377
VRKA+ VI NG++ C +A + TGV VM + NP +F TG+
Sbjct: 192 DVRKAVDTVVIGNGDVFCPHSAKAMMEHTGVDAVMVGRASRGNPWIFRQIAEYLNTGELI 251
Query: 378 PAWELASEYLDLVAQY---PVRLQYARGHVFNMCHH----LLTLPENSDVRLLVGKTNHI 430
P E +D++ ++ ++L+ A+ V + H L LP + + R+ + + H
Sbjct: 252 PP-PTPVERVDVLEEHLRRLIKLKTAKVAVKEIRTHASFYLQDLPNSKEFRMKLNQLEHE 310
Query: 431 KDLRKAVDMLRERFIDY 447
+++ K ++ ++ +
Sbjct: 311 QEIFKVLEEYKKSLYKF 327
>gi|423718344|ref|ZP_17692526.1| TIM-barrel protein, NifR3 family [Geobacillus thermoglucosidans
TNO-09.020]
gi|383365280|gb|EID42579.1| TIM-barrel protein, NifR3 family [Geobacillus thermoglucosidans
TNO-09.020]
Length = 333
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 120/224 (53%), Gaps = 6/224 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R +LAPM +RL + +G+ L MVS + + + +L ++PL +Q
Sbjct: 12 RVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKGIVYNNEKTLNMLYIDEREKPLSLQ 71
Query: 210 FCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G + + L EAAK + H D IDIN+GCP + GA D + ++V+++
Sbjct: 72 IFGGEKETLVEAAKFVDKHTNADIIDINMGCPVPKVTKCDAGAKWLLDPNKIYDVVAAIV 131
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV+ PV+ K+RI D N VE A+ +ERAG + +AVHGRT Q M G A W I
Sbjct: 132 DAVEKPVTVKMRIGWDENHIYAVENAQAVERAGGKAVAVHGRTRVQ--MYEGKADWNIIK 189
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
V++A+ IPVI NG+++ D + L +TGV GVM L NP
Sbjct: 190 QVKEAVNIPVIGNGDVKTPQDAKRMLEETGVDGVMIGRAALGNP 233
>gi|160891700|ref|ZP_02072703.1| hypothetical protein BACUNI_04155 [Bacteroides uniformis ATCC 8492]
gi|270295204|ref|ZP_06201405.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|156859107|gb|EDO52538.1| TIM-barrel protein, nifR3 family [Bacteroides uniformis ATCC 8492]
gi|270274451|gb|EFA20312.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 326
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 120/233 (51%), Gaps = 9/233 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D ++ +RL+ + +G+ + YT VSA I Q+ L + E+RP
Sbjct: 8 LGPRPVFLAPMEDVTDPAFRLMCKHFGADMVYTEFVSADALIRSVGKTQQKLNISDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D+ + EAA++ E H D +DIN GCP + VA +G LQ + PL+ +
Sbjct: 68 VAIQIYGRDTATMVEAARIVEQAHPDTLDINFGCPVKRVAGKGAGAGMLQ-NIPLMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
++ AV++PV+ K R+ D N V+ A L+ G L +HGRT Q M TG A W
Sbjct: 127 RAVVDAVKIPVTVKTRLGWDANSKIIVDLAEQLQDCGIAALTIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
I V+K + IP+I NG+I + C GV +M + P F
Sbjct: 185 TLIGEVKKNPRMHIPIIGNGDITTPQRAKECFDLYGVDAIMIGRASFGRPWFF 237
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LG LAPM D ++ +RL+ + +G+ + YT VSA I Q+ L + E+RP
Sbjct: 8 LGPRPVFLAPMEDVTDPAFRLMCKHFGADMVYTEFVSADALIRSVGKTQQKLNISDEERP 67
Query: 136 LIIQ 139
+ IQ
Sbjct: 68 VAIQ 71
>gi|212692328|ref|ZP_03300456.1| hypothetical protein BACDOR_01824 [Bacteroides dorei DSM 17855]
gi|237711412|ref|ZP_04541893.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|265752818|ref|ZP_06088387.1| dehydrogenase [Bacteroides sp. 3_1_33FAA]
gi|345514118|ref|ZP_08793632.1| dehydrogenase [Bacteroides dorei 5_1_36/D4]
gi|423230712|ref|ZP_17217116.1| tRNA dihydrouridine synthase A [Bacteroides dorei CL02T00C15]
gi|423240664|ref|ZP_17221778.1| tRNA dihydrouridine synthase A [Bacteroides dorei CL03T12C01]
gi|423244423|ref|ZP_17225498.1| tRNA dihydrouridine synthase A [Bacteroides dorei CL02T12C06]
gi|212665205|gb|EEB25777.1| TIM-barrel protein, nifR3 family [Bacteroides dorei DSM 17855]
gi|229435935|gb|EEO46012.1| dehydrogenase [Bacteroides dorei 5_1_36/D4]
gi|229454107|gb|EEO59828.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263236004|gb|EEZ21499.1| dehydrogenase [Bacteroides sp. 3_1_33FAA]
gi|392630362|gb|EIY24355.1| tRNA dihydrouridine synthase A [Bacteroides dorei CL02T00C15]
gi|392641997|gb|EIY35769.1| tRNA dihydrouridine synthase A [Bacteroides dorei CL02T12C06]
gi|392643626|gb|EIY37375.1| tRNA dihydrouridine synthase A [Bacteroides dorei CL03T12C01]
Length = 329
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 154/321 (47%), Gaps = 35/321 (10%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
LAPM D ++ +RL+ +++G+ + YT VSA I + L E+RP+ +Q
Sbjct: 13 IFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSADALIRSVGKTMQKLNINDEERPVAVQI 72
Query: 211 CGNDSKNLTEAAKLA-EPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G D++ + EAAK+ E H D +DIN GCP + VA +G GA + + PL+ + ++
Sbjct: 73 YGRDTETMVEAAKIVEEAHPDILDINFGCPVKRVAGKGA-GAGMLQNIPLMLEITRAVVD 131
Query: 269 AVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV++PV+ K R+ D V+ A L+ G + L +HGRT Q M TG A W I
Sbjct: 132 AVKIPVTVKTRLGWDNEHKIIVDLAEQLQDCGIEALTIHGRTRAQ--MYTGEADWSLIGE 189
Query: 327 VRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQT 376
V+K + IP+I NG+I + C GV +M + P +F TG+
Sbjct: 190 VKKNPRMHIPIIGNGDITTPQRAKECFDLYGVDAIMIGRASFGRPWIFKEIKHYIETGKE 249
Query: 377 RPA----WELA---SEYLDLVAQYPVRLQYARGHVFNMCHHLLT------LPENSDVRLL 423
PA W L E LD V L R + ++ HL +P + R+
Sbjct: 250 LPALSFEWRLNVLRQEVLD-----SVNLLDERRGILHVRRHLAASPLFKGIPNFKETRIA 304
Query: 424 VGKTNHIKDLRKAVDMLRERF 444
+ + +K+L +D +R +
Sbjct: 305 MLRAETVKELFSILDYIRGNY 325
Score = 41.2 bits (95), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
LAPM D ++ +RL+ +++G+ + YT VSA I + L E+RP+ +Q
Sbjct: 13 IFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSADALIRSVGKTMQKLNINDEERPVAVQ 71
>gi|1171716|sp|P45672.1|DUS_AZOBR RecName: Full=Probable tRNA-dihydrouridine synthase
gi|599600|emb|CAA86063.1| nifR3-like protein [Azospirillum brasilense]
Length = 328
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM ++LP+R L ++ G L + MV++ I + + ++ PE P+ +Q
Sbjct: 15 ILAPMSGVTDLPFRRLVKQSGCGLVVSEMVASQAMIRENRQTLRMVECEPEQFPMAVQLA 74
Query: 212 GNDSKNLTEAAKLAEPHCDG-IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G + + EAAKL E IDIN GCP GH G+ L D L ++ + +AV
Sbjct: 75 GCEPDVMAEAAKLNEDRGAAIIDINFGCPVKKVVNGHAGSSLMRDEALAARILEATAKAV 134
Query: 271 QVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+PV+ K+R D + AR+ E G +L+ VHGRT +Q G A W I +V+
Sbjct: 135 TIPVTLKMRKGWDDSSLNAPRLARIAEECGIKLVTVHGRTREQ--FYNGTADWSFIRSVK 192
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
+A++IPV+ NG+I V+ LA++G GVM G P
Sbjct: 193 EAVSIPVVVNGDITSFDAVDRALAESGADGVMIGRGAYGRP 233
>gi|351714128|gb|EHB17047.1| tRNA-dihydrouridine synthase 2-like protein [Heterocephalus glaber]
Length = 492
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 143/294 (48%), Gaps = 25/294 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST----PEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + + K++ E+L + P+DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPDDRV 72
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q +D++ +L E GID+N+GCP+ + +G GA L
Sbjct: 73 VFRTCAKEQNRVVFQMGTSDAERALAVVRLVENDVAGIDVNMGCPKEYSTKGGMGAALLS 132
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + ++ +L + + PV+CKIRI + T+ + +ER G +AVHGR ++R
Sbjct: 133 DPDKIEKILGTLVRGTRRPVTCKIRILPSLEDTLSLVKRIERTGVAAIAVHGRKHEERPQ 192
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ E I A+ L+IPVIANG IQ D+E TG + VM A ++NP+
Sbjct: 193 HP--VHCEVIKAIAGTLSIPVIANGGSHDHIQQHLDIENFRQATGASSVMVARAAMWNPS 250
Query: 371 LFTGQT-RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+F RP E+ +Y+ V QY + + +C L E+ RLL
Sbjct: 251 IFLKDGLRPLEEVMQKYIRYVLQYDNHYTNTK---YCLCQMLREQLESPQGRLL 301
>gi|220905344|ref|YP_002480656.1| dihydrouridine synthase DuS [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869643|gb|ACL49978.1| dihydrouridine synthase DuS [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 331
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/225 (37%), Positives = 122/225 (54%), Gaps = 6/225 (2%)
Query: 153 LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCG 212
LAP+ S+LP+RLL R+YG+ +C T MVSA + E+L S PED+PL++Q G
Sbjct: 26 LAPLAGYSDLPFRLLCRQYGAAVCVTEMVSAKGLVYQSPGTNELLASLPEDQPLVVQLFG 85
Query: 213 NDSKNLTEAAKLAEPHCDG-IDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
++ L+ A L G D+N+GC V ++G A L D +L + A
Sbjct: 86 AEAPFLSRAVSLLRDAGYGWFDLNMGCSVAKVLRQGAGAAMLGDTGNILEVARGMIAAAG 145
Query: 271 QVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
V K+R+ D + V + A LE AG L +H RT Q G G A WE + +
Sbjct: 146 PGRVGFKLRLGLDDTRPVLPDLALRLEDAGAGWLVLHPRTARQ-GFG-GTAQWEALADLA 203
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
L+IP++A+G++ A+ ACL QTG AG+M A G +YNPA+F
Sbjct: 204 PRLSIPLLASGDLFSAAEGMACLEQTGAAGLMYARGAMYNPAIFA 248
Score = 59.3 bits (142), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 83 LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
LAP+ S+LP+RLL R+YG+ +C T MVSA + E+L S PED+PL++Q
Sbjct: 26 LAPLAGYSDLPFRLLCRQYGAAVCVTEMVSAKGLVYQSPGTNELLASLPEDQPLVVQ 82
>gi|442803624|ref|YP_007371773.1| tRNA-dihydrouridine synthase 1 [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442739474|gb|AGC67163.1| tRNA-dihydrouridine synthase 1 [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 324
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 127/234 (54%), Gaps = 8/234 (3%)
Query: 145 RLGS--PR--FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 200
R+GS P+ LAPM +++P+R L R G+ L YT MVS+ + K + + ++
Sbjct: 6 RIGSFVPKNNIFLAPMAGVTDMPFRYLCSRMGAGLTYTEMVSSKGMYYNDKKTELLTVTH 65
Query: 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDG--IDINIGCPQMVAKRGHYGAYLQDDWPL 258
PE+ P +Q G++ + + +AA+ D IDIN+GCP + + G L + L
Sbjct: 66 PEEAPCAVQIFGSEPEIMAKAAEKLSMRDDIAIIDINMGCPAPKIVKNNEGCALMRNLKL 125
Query: 259 LTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL 318
+ ++ ++ +A PV+ K R + + VE+A+M E +G + VHGRT +Q M +G
Sbjct: 126 ASEIIKAVVKASSKPVTVKFRKGFNEDNAVEFAKMAEESGASAVTVHGRTREQ--MYSGK 183
Query: 319 ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
A W+ I V++A+++PVI NG+I D L +TG VM G NP +F
Sbjct: 184 ADWDVIARVKQAVSVPVIGNGDIFTPEDAREMLEKTGCDAVMVGRGAQGNPWIF 237
Score = 58.5 bits (140), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 108/240 (45%), Gaps = 40/240 (16%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
LAPM +++P+R L R G+ L YT MVS+ + K + + ++ PE+ P +Q
Sbjct: 16 IFLAPMAGVTDMPFRYLCSRMGAGLTYTEMVSSKGMYYNDKKTELLTVTHPEEAPCAVQ- 74
Query: 141 TIFPRLGSPRFILAPMVDASELPWR----LLSRRYGSHLCYTPMVSAHQ----FIADKKL 192
IF GS I+A A +L R ++ G C P + + + + KL
Sbjct: 75 -IF---GSEPEIMAKA--AEKLSMRDDIAIIDINMG---CPAPKIVKNNEGCALMRNLKL 125
Query: 193 RQEILMST--PEDRPLIIQF-CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 249
EI+ + +P+ ++F G + N E AK+AE V R
Sbjct: 126 ASEIIKAVVKASSKPVTVKFRKGFNEDNAVEFAKMAEESG-------ASAVTVHGRTREQ 178
Query: 250 AYL-QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYAR-MLERAGCQLLAVHGR 307
Y + DW ++++ ++QAV VPV I+ T E AR MLE+ GC + V GR
Sbjct: 179 MYSGKADW----DVIARVKQAVSVPVIGNGDIF-----TPEDAREMLEKTGCDAVMV-GR 228
>gi|91774082|ref|YP_566774.1| dihydrouridine synthase, DuS [Methanococcoides burtonii DSM 6242]
gi|91713097|gb|ABE53024.1| tRNA-dihydrouridine synthase [Methanococcoides burtonii DSM 6242]
Length = 318
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 123/224 (54%), Gaps = 4/224 (1%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
+LAP+ + + L +RL+ ++YG+ LC+T M+S+ + ++ E+RP +Q
Sbjct: 12 LLLAPLAEVTNLAFRLMCKKYGASLCFTEMISSDAVVYGNASSAMRGITCDEERPFGLQL 71
Query: 211 CGNDSKNLTEAAKLAEP--HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
GN + +TEAA + E + D IDIN+GCP V G+ L + L++++ S+L +
Sbjct: 72 FGNSPEVITEAALVLEDMFYPDMIDINLGCPAPVITNAGCGSALLESPELVSDIFSTLCE 131
Query: 269 AVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
V PV+ KIR+ + T++ A LE AG + VHGRT +Q +G A + ++
Sbjct: 132 GVDTPVTAKIRVLESRAATLDMAHRLEDAGVCAITVHGRTCEQG--YSGTADHSYAKLIK 189
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
+ L+IPVI NG+I+ E L TG G+M + +P +F
Sbjct: 190 EELSIPVIVNGDIRDGVSAEKVLEYTGCDGLMIGRAAMGDPHVF 233
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+LAP+ + + L +RL+ ++YG+ LC+T M+S+ + ++ E+RP +Q
Sbjct: 12 LLLAPLAEVTNLAFRLMCKKYGASLCFTEMISSDAVVYGNASSAMRGITCDEERPFGLQ 70
>gi|423061889|ref|ZP_17050679.1| TIM-barrel protein nifR3 family [Arthrospira platensis C1]
gi|406716462|gb|EKD11611.1| TIM-barrel protein nifR3 family [Arthrospira platensis C1]
Length = 342
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 134/245 (54%), Gaps = 17/245 (6%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYG-SHLCYTPMVSAHQFIADKKLRQEILMST-PEDRP 205
+ R + +P+ ++L +R L RRY + + YT MV A Q I ++L ILM P +RP
Sbjct: 31 NSRVLQSPLSGVTDLVFRRLVRRYAPNSMMYTEMVHASQIIHVREL--PILMEIDPGERP 88
Query: 206 LIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
+ IQ L EAA+ A E D ID+N+GCP + G+ L + +V
Sbjct: 89 ISIQLFDCRPDFLVEAARKAVEEGADTIDVNMGCPVNKITKNGGGSSLLRQPEIAEKIVR 148
Query: 265 SLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
SL +AV VP++ K R+ D ++ +++++ +E AG Q+L +HGRT Q TG A+WE
Sbjct: 149 SLNEAVSVPITVKTRLGWDEDEINILDFSKRMENAGAQMLTIHGRTRAQG--YTGKANWE 206
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TG 374
I V++ ++IPVIANG+I ++ CL +TG GVM + G L P L TG
Sbjct: 207 WIARVKQNVSIPVIANGDIVSVSSAVQCLQETGADGVMCSRGTLGYPFLVGEIDYFLKTG 266
Query: 375 QTRPA 379
Q + A
Sbjct: 267 QMKTA 271
>gi|325662824|ref|ZP_08151393.1| hypothetical protein HMPREF0490_02133 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470876|gb|EGC74105.1| hypothetical protein HMPREF0490_02133 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 325
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 133/251 (52%), Gaps = 17/251 (6%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
+ILAPM ++LP+RLL + G+ L MVSA K Q++L E+RP+ +Q
Sbjct: 18 YILAPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAIQYKNKNTQDLLRIHEEERPVSLQL 77
Query: 211 CGNDSKNLTEAAKLAEPHCDGI-DINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G++ ++E AK E I DIN+GCP + K G G+ L L+ +VS +
Sbjct: 78 FGSEPDTISEIAKQIEELPFAILDINMGCPVPKIVKNGE-GSALMKQPKLVYEIVSKTVK 136
Query: 269 AVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
A+Q PV+ KIR D + VE A+++E AG +AVHGRT +Q +G A WE I
Sbjct: 137 AIQKPVTVKIRKGFDDSCINAVEIAKVIEEAGGAAVAVHGRTREQ--YYSGKADWEIIRK 194
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQ--T 376
V++A++IPVI NG++ D TG GVM G NP +F TG+ +
Sbjct: 195 VKEAVSIPVIGNGDVTSAEDAVRMQKLTGCDGVMVGRGAQGNPWIFRELVEYDRTGKIPS 254
Query: 377 RPAWELASEYL 387
RP+ E E +
Sbjct: 255 RPSLEELKETM 265
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 96/234 (41%), Gaps = 32/234 (13%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
+ILAPM ++LP+RLL + G+ L MVSA K Q++L E+RP+ +Q
Sbjct: 18 YILAPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAIQYKNKNTQDLLRIHEEERPVSLQ- 76
Query: 141 TIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQEI 196
+F P I ELP+ +L G C P + + KL EI
Sbjct: 77 -LFG--SEPDTISEIAKQIEELPFAILDINMG---CPVPKIVKNGEGSALMKQPKLVYEI 130
Query: 197 LMSTPE--DRPLIIQF-CGNDSK--NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAY 251
+ T + +P+ ++ G D N E AK+ E G V R Y
Sbjct: 131 VSKTVKAIQKPVTVKIRKGFDDSCINAVEIAKVIEEAG-------GAAVAVHGRTREQYY 183
Query: 252 L-QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
+ DW ++ +++AV +PV DV + RM + GC + V
Sbjct: 184 SGKADW----EIIRKVKEAVSIPVIGN----GDVTSAEDAVRMQKLTGCDGVMV 229
>gi|298372677|ref|ZP_06982667.1| hypothetical protein HMPREF0156_00722 [Bacteroidetes oral taxon 274
str. F0058]
gi|298275581|gb|EFI17132.1| hypothetical protein HMPREF0156_00722 [Bacteroidetes oral taxon 274
str. F0058]
Length = 325
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 151/313 (48%), Gaps = 26/313 (8%)
Query: 153 LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCG 212
LAPM D ++ +RL+ + +G+ L YT VSA + + L E+RP+ IQ G
Sbjct: 15 LAPMEDVTDPAFRLVCKEFGADLVYTEFVSADALVRFVNRTMQKLTIVDEERPVAIQIYG 74
Query: 213 NDSKNLTEAAKL-AEPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
D + + +AAK+ AE + D IDIN GCP + +A +G GA L D P L ++ S+ +AV
Sbjct: 75 KDPQTMVDAAKIVAESNPDIIDINFGCPVKKIASKGA-GAGLLRDIPRLLDITQSVVKAV 133
Query: 271 QVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+PV+ K R+ D N + AR L+ G LA+HGRT Q M TG A W I V+
Sbjct: 134 NLPVTVKTRLGWDDNSKIICTLARQLQDCGIAALAIHGRTRSQ--MYTGEADWTLIGEVK 191
Query: 329 K--ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT-------GQTR-- 377
+ IP+I NG+I E + GV +M G + N +F G+ R
Sbjct: 192 NDPKIKIPIIGNGDITTPEVAEDKFHRYGVDAIMVGRGAIGNAWIFAEIKNRLLGENRYS 251
Query: 378 -PAWELASEYLDLVAQYPVR-LQYARGHVFNMCHHLLT------LPENSDVRLLVGKTNH 429
P +E E L + L+ R + + H+ +P R+ + K +
Sbjct: 252 VPNFESRKEILKRHIINSIEWLKDERKGIIHSRRHIAATPIFKGIPNFKPTRIAMLKADS 311
Query: 430 IKDLRKAVDMLRE 442
I DL +D +RE
Sbjct: 312 ISDLFALIDGVRE 324
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 83 LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
LAPM D ++ +RL+ + +G+ L YT VSA + + L E+RP+ IQ
Sbjct: 15 LAPMEDVTDPAFRLVCKEFGADLVYTEFVSADALVRFVNRTMQKLTIVDEERPVAIQ 71
>gi|209526027|ref|ZP_03274560.1| TIM-barrel protein, nifR3 family [Arthrospira maxima CS-328]
gi|376002226|ref|ZP_09780066.1| putative tRNA-dihydrouridine synthase (Nitrogen regulation protein
nifR3) [Arthrospira sp. PCC 8005]
gi|209493553|gb|EDZ93875.1| TIM-barrel protein, nifR3 family [Arthrospira maxima CS-328]
gi|375329394|emb|CCE15819.1| putative tRNA-dihydrouridine synthase (Nitrogen regulation protein
nifR3) [Arthrospira sp. PCC 8005]
Length = 335
Score = 132 bits (331), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 134/245 (54%), Gaps = 17/245 (6%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYG-SHLCYTPMVSAHQFIADKKLRQEILMST-PEDRP 205
+ R + +P+ ++L +R L RRY + + YT MV A Q I ++L ILM P +RP
Sbjct: 24 NSRVLQSPLSGVTDLVFRRLVRRYAPNSMMYTEMVHASQIIHVREL--PILMEIDPGERP 81
Query: 206 LIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
+ IQ L EAA+ A E D ID+N+GCP + G+ L + +V
Sbjct: 82 ISIQLFDCRPDFLVEAARKAVEEGADTIDVNMGCPVNKITKNGGGSSLLRQPEIAEKIVR 141
Query: 265 SLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
SL +AV VP++ K R+ D ++ +++++ +E AG Q+L +HGRT Q TG A+WE
Sbjct: 142 SLNEAVSVPITVKTRLGWDEDEINILDFSKRMENAGAQMLTIHGRTRAQG--YTGKANWE 199
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TG 374
I V++ ++IPVIANG+I ++ CL +TG GVM + G L P L TG
Sbjct: 200 WIARVKQNVSIPVIANGDIVSVSSAVQCLQETGADGVMCSRGTLGYPFLVGEIDYFLKTG 259
Query: 375 QTRPA 379
Q + A
Sbjct: 260 QMKTA 264
>gi|297699046|ref|XP_002826610.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like [Pongo abelii]
Length = 493
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 142/294 (48%), Gaps = 25/294 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS----TPEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + I K++ E+L + P+DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRV 72
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q +D++ A+L E GID+N+GCP+ + +G GA L
Sbjct: 73 VFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLS 132
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + L+S + + PV+C IRI + T+ + +ER G + VHGR ++R
Sbjct: 133 DPDKIEKLLSLFVKGTRRPVTCNIRILPSLEDTLSLVKRIERTGIAAITVHGRKQEERPQ 192
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ S E I A+ ++IPVIANG IQ +D+E T + VM A ++NP+
Sbjct: 193 HP--VSCEVIKAIADTVSIPVIANGGSHDHIQRYSDIEDFRQATAASSVMVARAAMWNPS 250
Query: 371 LFTGQT-RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+F + RP E+ +Y+ QY + + +C L E+ RLL
Sbjct: 251 IFLKEGLRPLEEVMQKYIRYAVQYD---NHYTNTKYCLCQMLREQLESPQGRLL 301
>gi|262382918|ref|ZP_06076055.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262295796|gb|EEY83727.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 329
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 146/288 (50%), Gaps = 23/288 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D +++ +RL+ +R+G+ + YT VS+ I + Q+ L + ++RP
Sbjct: 8 LGERPVFLAPMEDVTDISFRLMCKRFGADMVYTEFVSSDALIRNVNKTQQKLNVSDDERP 67
Query: 206 LIIQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D ++ EAA++ E D +DIN GCP + VA +G GA + + PL+ +
Sbjct: 68 VAIQIYGKDVASMVEAARICEEARPDILDINFGCPVKKVAGKGA-GAGMLRNIPLMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV +PV+ K R+ D + V+ A L+ G L++HGRT Q M TG A W
Sbjct: 127 REVVKAVNIPVTVKTRLGWDADNRIIVDLAEQLQDCGIAALSIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I AV+ + IP+I NG++ + GV VM ++ P +F
Sbjct: 185 TLIGAVKNNPRMQIPIIGNGDVTSAEICKQRFEDYGVDAVMIGRASIGRPWIFREVKHYL 244
Query: 373 -TGQTRPAWELASEYLDL----VAQYPVRLQYARGHVFNMCHHLLTLP 415
TG+ P E S YLD+ V Q RL RG + ++ HL P
Sbjct: 245 TTGELLPQ-EPFSWYLDILKKQVEQSVERLDERRG-ILHIRRHLAATP 290
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LG LAPM D +++ +RL+ +R+G+ + YT VS+ I + Q+ L + ++RP
Sbjct: 8 LGERPVFLAPMEDVTDISFRLMCKRFGADMVYTEFVSSDALIRNVNKTQQKLNVSDDERP 67
Query: 136 LIIQ 139
+ IQ
Sbjct: 68 VAIQ 71
>gi|153813030|ref|ZP_01965698.1| hypothetical protein RUMOBE_03438 [Ruminococcus obeum ATCC 29174]
gi|149830832|gb|EDM85922.1| TIM-barrel protein, nifR3 family [Ruminococcus obeum ATCC 29174]
Length = 327
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 140/274 (51%), Gaps = 15/274 (5%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
FILAPM ++LP+R+L + G+ L T MVSA K ++ P + P+ +Q
Sbjct: 20 FILAPMAGVTDLPFRILCKEQGAGLLCTEMVSAKAISFHNKNTISLMQIDPVEHPVSMQI 79
Query: 211 CGNDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G++ + E AK + E D +DIN+GCP G+ L + L+ +V+ + +A
Sbjct: 80 FGSEPDLMAEVAKSIEEQPFDILDINMGCPVPKVVNNGEGSALLKNPELIREIVTKVSRA 139
Query: 270 VQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
V+ PV+ KIRI + VE A+++E +G +AVHGRT Q G A W+ I +
Sbjct: 140 VKKPVTAKIRIGFEGYPVDPVEIAKIIEDSGAAAVAVHGRTRQQ--YYAGEADWDTIRRI 197
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQT--R 377
++A++IPVI NG++ EA + +TG G+M NP +F TG+ R
Sbjct: 198 KEAVSIPVIGNGDVDSPKKAEALVRETGCDGIMIGRAVRGNPWIFREMNHYFTTGELLPR 257
Query: 378 PAWELASEYLDLVAQYPVRLQYARGHVFNMCHHL 411
P+WE E + A+ + L+ + M H+
Sbjct: 258 PSWEEIREMILRHARMQIELKGEFTGIREMRKHI 291
Score = 40.8 bits (94), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
FILAPM ++LP+R+L + G+ L T MVSA K ++ P + P+ +Q
Sbjct: 20 FILAPMAGVTDLPFRILCKEQGAGLLCTEMVSAKAISFHNKNTISLMQIDPVEHPVSMQ- 78
Query: 141 TIFPRLGSPRFILAPMVDA-SELPWRLLSRRYGSHLCYTPMV 181
IF GS ++A + + E P+ +L G C P V
Sbjct: 79 -IF---GSEPDLMAEVAKSIEEQPFDILDINMG---CPVPKV 113
>gi|294795205|ref|ZP_06760339.1| tRNA-dihydrouridine synthase [Veillonella sp. 3_1_44]
gi|294453997|gb|EFG22372.1| tRNA-dihydrouridine synthase [Veillonella sp. 3_1_44]
Length = 328
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 139/259 (53%), Gaps = 19/259 (7%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM S++ +RLL++++G+ L T MVSA + E+L +RP+ +Q
Sbjct: 18 ILAPMAGVSDIAYRLLAKKHGAALVCTEMVSAMGIKYKNERTHELLRIEEAERPVSMQIF 77
Query: 212 GNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G++ + + AK+ A+ D +DIN+GCP G+ L + L + + +A+
Sbjct: 78 GSNPEAIALGAKVVADAGADIVDINMGCPVKKVVTSGDGSALMKNPDLAARVAEAAVEAI 137
Query: 271 QVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
VPV+ K+RI D + V++A+ +E G +AVHGRT +Q M +G A W +I AV+
Sbjct: 138 DVPVTVKMRIGWDSDSINVVDFAKRIESTGVAAIAVHGRTKEQ--MYSGHADWSYIKAVK 195
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRPA- 379
+A+++PV+ NG+I D + L +TG VM G NP +F TG+ PA
Sbjct: 196 EAVSVPVLGNGDIVNPEDAKQMLDETGCDAVMVGRGAQGNPWIFGRIHHYLATGEVLPAP 255
Query: 380 -----WELASEYLDLVAQY 393
++ ++ DL+ QY
Sbjct: 256 TDIERLDMLLKHFDLLCQY 274
Score = 42.7 bits (99), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 75 QLGSPRF----ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
Q+G+ + ILAPM S++ +RLL++++G+ L T MVSA + E+L
Sbjct: 7 QIGAVKIDGQAILAPMAGVSDIAYRLLAKKHGAALVCTEMVSAMGIKYKNERTHELLRIE 66
Query: 131 PEDRPLIIQ 139
+RP+ +Q
Sbjct: 67 EAERPVSMQ 75
>gi|85374084|ref|YP_458146.1| tRNA-dihydrouridine synthase [Erythrobacter litoralis HTCC2594]
gi|84787167|gb|ABC63349.1| tRNA-dihydrouridine synthase [Erythrobacter litoralis HTCC2594]
Length = 338
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 126/253 (49%), Gaps = 13/253 (5%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM ++LP+R L RR+GS L T M+++ I + + + + P+ +Q
Sbjct: 25 VLAPMTGVTDLPFRTLVRRFGSGLNVTEMIASEAAIRETRQSVQKAAWDKTEDPVSMQLV 84
Query: 212 GNDSKNLTEAAKLAEPHCDG-IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G D ++ EAAKL E + IDIN GCP G+ L + PL T L+ + AV
Sbjct: 85 GCDPVSMGEAAKLQEDNGAAIIDINFGCPVRKVVGQLAGSALMREVPLATRLMEATVNAV 144
Query: 271 QVPVSCKIRIYQD--VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
VPV+ K+R+ D E AR+ E G Q++ VHGRT +Q M G A W I V+
Sbjct: 145 DVPVTVKMRMGWDHASLNAPELARIAEDLGVQMITVHGRTRNQ--MYKGSADWSFIRKVK 202
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRPAW 380
A++IPVI NG+I + D L Q+G G+M G P L TG +
Sbjct: 203 DAVSIPVIVNGDICGIEDAANALEQSGADGLMIGRGAYGKPWLLAQVMHWWKTGDRLESP 262
Query: 381 ELASEYLDLVAQY 393
+ +Y LV Y
Sbjct: 263 DFDLQYETLVEHY 275
>gi|331086547|ref|ZP_08335625.1| hypothetical protein HMPREF0987_01928 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330410380|gb|EGG89812.1| hypothetical protein HMPREF0987_01928 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 325
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 121/225 (53%), Gaps = 5/225 (2%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
+ILAPM ++LP+RLL + G+ L MVSA K Q++L E+RP+ +Q
Sbjct: 18 YILAPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAIQYKNKNTQDLLRIHEEERPVSLQL 77
Query: 211 CGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G++ ++E AK E I DIN+GCP + G+ L L+ +VS +A
Sbjct: 78 FGSEPDTISEIAKQIEELPFAILDINMGCPVPKIVKNGEGSALMKQPKLVYEIVSKTVKA 137
Query: 270 VQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
+Q PV+ KIR D + VE A+++E AG +AVHGRT +Q +G A WE I V
Sbjct: 138 IQKPVTVKIRKGFDDSCINAVEIAKVIEEAGGAAVAVHGRTREQ--YYSGKADWEIIRKV 195
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
++A++IPVI NG++ D TG GVM G NP +F
Sbjct: 196 KEAVSIPVIGNGDVTSAEDAVRMQKLTGCDGVMVGRGAQGNPWIF 240
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 96/234 (41%), Gaps = 32/234 (13%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
+ILAPM ++LP+RLL + G+ L MVSA K Q++L E+RP+ +Q
Sbjct: 18 YILAPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAIQYKNKNTQDLLRIHEEERPVSLQ- 76
Query: 141 TIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQEI 196
+F P I ELP+ +L G C P + + KL EI
Sbjct: 77 -LFG--SEPDTISEIAKQIEELPFAILDINMG---CPVPKIVKNGEGSALMKQPKLVYEI 130
Query: 197 LMSTPE--DRPLIIQF-CGNDSK--NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAY 251
+ T + +P+ ++ G D N E AK+ E G V R Y
Sbjct: 131 VSKTVKAIQKPVTVKIRKGFDDSCINAVEIAKVIEEAG-------GAAVAVHGRTREQYY 183
Query: 252 L-QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
+ DW ++ +++AV +PV DV + RM + GC + V
Sbjct: 184 SGKADW----EIIRKVKEAVSIPVIGN----GDVTSAEDAVRMQKLTGCDGVMV 229
>gi|189425844|ref|YP_001953021.1| hypothetical protein Glov_2788 [Geobacter lovleyi SZ]
gi|189422103|gb|ACD96501.1| TIM-barrel protein, nifR3 family [Geobacter lovleyi SZ]
Length = 325
Score = 131 bits (330), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 94/325 (28%), Positives = 162/325 (49%), Gaps = 23/325 (7%)
Query: 134 RPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLR 193
RPL I P +LAP+ + +RL+ R+ G+ L +T M+S + + + +
Sbjct: 5 RPLKIGSLTLPH----NLLLAPLAGITNHVFRLICRQAGACLAFTEMISVNGMVREGEKT 60
Query: 194 QEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCP-QMVAKRGHYGAYL 252
+L S+P+DRPL +Q GN + L +AA + + + D IDIN+GCP + V G A L
Sbjct: 61 LALLSSSPDDRPLGVQLFGNAPELLAQAASMVKDNADLIDINMGCPVRKVVGTGAGSALL 120
Query: 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRI-YQDVNKT-VEYARMLERAGCQLLAVHGRTVD 310
QD + +V S+R+ +P++ KIR +Q + T E R+ E GC + +H R+
Sbjct: 121 QDT-ARIAEIVRSVRRTTNLPLTIKIRSGWQCGDDTWQEVGRIAEAEGCDAITLHPRSRA 179
Query: 311 QRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
Q M G A W+ I +++ + IPVI +G++ D L++TG G+M A G L NP
Sbjct: 180 Q--MFNGQADWQQIGQLKQLVKIPVIGSGDLFTPQDCRRMLSETGCDGLMVARGALGNPW 237
Query: 371 LFTG-----QTRPA--------WELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPEN 417
+F+ + RP +A ++L L Y R ++ ++ +P
Sbjct: 238 IFSQTCELLEGRPVTPVSCADRMAMAEQHLALFTDYAGESVAVREMKKHLGWYIHGVPGA 297
Query: 418 SDVRLLVGKTNHIKDLRKAVDMLRE 442
+ +R V ++ +L ++ +R+
Sbjct: 298 AALRRTVNTARNMNELLDVIEQIRK 322
>gi|255012934|ref|ZP_05285060.1| putative TIM-barrel enzyme [Bacteroides sp. 2_1_7]
gi|410102135|ref|ZP_11297062.1| tRNA dihydrouridine synthase A [Parabacteroides sp. D25]
gi|409238857|gb|EKN31645.1| tRNA dihydrouridine synthase A [Parabacteroides sp. D25]
Length = 329
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 145/288 (50%), Gaps = 23/288 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D +++ +RL+ +R+G+ + YT VS+ I Q+ L + ++RP
Sbjct: 8 LGERPVFLAPMEDVTDISFRLMCKRFGADMVYTEFVSSDALIRSVNKTQQKLNVSDDERP 67
Query: 206 LIIQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D ++ EAA++ E D +DIN GCP + VA +G GA + + PL+ +
Sbjct: 68 VAIQIYGKDVASMVEAARICEEARPDILDINFGCPVKKVAGKGA-GAGMLRNIPLMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV +PV+ K R+ D + V+ A L+ G L++HGRT Q M TG A W
Sbjct: 127 KEVVKAVNIPVTVKTRLGWDADNRVIVDLAEQLQDCGIAALSIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I AV+ + IP+I NG++ + GV VM ++ P +F
Sbjct: 185 TLIGAVKNNPRMQIPIIGNGDVTSAEICKQRFEDYGVDAVMIGRASIGRPWIFREVKHYL 244
Query: 373 -TGQTRPAWELASEYLDL----VAQYPVRLQYARGHVFNMCHHLLTLP 415
TG+ P E S YLD+ V Q RL RG + ++ HL P
Sbjct: 245 TTGELLPQ-EPFSWYLDILKKQVEQSVERLDERRG-ILHIRRHLAATP 290
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LG LAPM D +++ +RL+ +R+G+ + YT VS+ I Q+ L + ++RP
Sbjct: 8 LGERPVFLAPMEDVTDISFRLMCKRFGADMVYTEFVSSDALIRSVNKTQQKLNVSDDERP 67
Query: 136 LIIQ 139
+ IQ
Sbjct: 68 VAIQ 71
>gi|218134816|ref|ZP_03463620.1| hypothetical protein BACPEC_02719 [[Bacteroides] pectinophilus ATCC
43243]
gi|217990201|gb|EEC56212.1| TIM-barrel protein, nifR3 family [[Bacteroides] pectinophilus ATCC
43243]
Length = 319
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 122/224 (54%), Gaps = 5/224 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM ++LP+RLL + G + Y+ MVSA + + + E+L PE+ P+ +Q
Sbjct: 13 ILAPMAGVTDLPFRLLCKEQGCGMLYSEMVSAKAIMYNNRNTDELLKVRPEENPVAVQLF 72
Query: 212 GNDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G+D + + + AK + E D ID+N+GCP G+ L + L+ +VS++ +AV
Sbjct: 73 GSDPQIMADMAKRIEELPFDTIDVNMGCPVPKVVNNGEGSALMKNPLLVGQIVSAMAKAV 132
Query: 271 QVPVSCKIR--IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+ PV+ KIR D+ E A ++E +G +AVHGRT +Q TG A W+ I V+
Sbjct: 133 KKPVTVKIRKGFNDDMINAPEIAHIIEESGGACVAVHGRTREQ--YYTGKADWDIIRQVK 190
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
+ + IPVI NG+I A L +TG VM NP +F
Sbjct: 191 QRVHIPVIGNGDITDALSARAMLDETGCDAVMIGRAARGNPWIF 234
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 101/231 (43%), Gaps = 28/231 (12%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
ILAPM ++LP+RLL + G + Y+ MVSA + + + E+L PE+ P+ +Q
Sbjct: 13 ILAPMAGVTDLPFRLLCKEQGCGMLYSEMVSAKAIMYNNRNTDELLKVRPEENPVAVQ-- 70
Query: 142 IFPRLGSPRFILAPMVD-ASELPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQEI 196
GS I+A M ELP+ + G C P V + + L +I
Sbjct: 71 ---LFGSDPQIMADMAKRIEELPFDTIDVNMG---CPVPKVVNNGEGSALMKNPLLVGQI 124
Query: 197 L--MSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL-Q 253
+ M+ +P+ ++ + ++ A ++A H I+ + G V R Y +
Sbjct: 125 VSAMAKAVKKPVTVKIRKGFNDDMINAPEIA--HI--IEESGGACVAVHGRTREQYYTGK 180
Query: 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
DW +++ ++Q V +PV D+ + ML+ GC + +
Sbjct: 181 ADW----DIIRQVKQRVHIPVIGN----GDITDALSARAMLDETGCDAVMI 223
>gi|110597836|ref|ZP_01386119.1| Dihydrouridine synthase TIM-barrel protein nifR3 [Chlorobium
ferrooxidans DSM 13031]
gi|110340561|gb|EAT59044.1| Dihydrouridine synthase TIM-barrel protein nifR3 [Chlorobium
ferrooxidans DSM 13031]
Length = 347
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 85/228 (37%), Positives = 128/228 (56%), Gaps = 11/228 (4%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI--ADKKLRQEILMSTPEDRPLIIQ 209
ILAPM D ++ +R L +++G+ + YT +SA A+K +R+ L + +RPL +Q
Sbjct: 13 ILAPMEDVTDRAFRQLCKQHGADIVYTEFISAEALRRGAEKTVRK--LRADTVERPLAVQ 70
Query: 210 FCGNDSKNLTEAAKLAEPHC-DGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G+ +++ EAA +AE D +DIN GCP + VA +G GA L + +T + ++
Sbjct: 71 IFGSTVESMIEAAVIAEEFRPDYLDINFGCPTKKVAGKGA-GAALLREPEKMTLIAEAVV 129
Query: 268 QAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+AV +PV+ K RI D ++ LE AG Q LAVHGRT + M G A W I
Sbjct: 130 KAVSIPVTAKTRIGWDRESINIIDVLHRLEGAGIQALAVHGRTRSE--MYKGRADWNWIR 187
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
V++ +IP+IANG+I D A+TG GVM G++ NP +F
Sbjct: 188 EVKEQASIPIIANGDIWSAEDAVRMFAETGADGVMIGRGSIGNPFIFA 235
>gi|348572540|ref|XP_003472050.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Cavia porcellus]
Length = 493
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 134/264 (50%), Gaps = 22/264 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST----PEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + + K++ E+L + P+DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPDDRV 72
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q +D++ A+L E GID+N+GCP+ + +G GA L
Sbjct: 73 VFRTCEKEQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLS 132
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + ++S+L + PV+CKIRI + T+ + +E+ G +AVHGR ++R
Sbjct: 133 DPDKIEKILSTLVRGTCRPVTCKIRILPSLEDTLSLVKRIEKTGIAAIAVHGRKREERPQ 192
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ S E I A+ + L+IPVIANG IQ D+E T + VM A ++NP+
Sbjct: 193 HP--VSCEIIKAIAETLSIPVIANGGSHDHIQQHLDIENFRQATAASSVMVARAAMWNPS 250
Query: 371 LFTGQT-RPAWELASEYLDLVAQY 393
+F RP E+ +Y+ QY
Sbjct: 251 IFLKDGLRPLEEVMQKYIRYAVQY 274
>gi|153853506|ref|ZP_01994886.1| hypothetical protein DORLON_00875 [Dorea longicatena DSM 13814]
gi|149753661|gb|EDM63592.1| TIM-barrel protein, nifR3 family [Dorea longicatena DSM 13814]
Length = 318
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 125/225 (55%), Gaps = 5/225 (2%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
+ILAPM ++LP+RLL + G+ L M+SA K + +L PE+ P+ +Q
Sbjct: 12 YILAPMAGVTDLPFRLLCKEQGAGLLCMEMISAKALQYKNKNTKALLAIHPEEYPVSLQL 71
Query: 211 CGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G+D K ++E AK+ E +DIN+GCP R G+ L + L+ +VS++ +A
Sbjct: 72 FGSDPKIMSEMAKMIEELPFQILDINMGCPVPKVVRNGEGSALMKNPKLVHEIVSAVSKA 131
Query: 270 VQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
++ PV+ KIR D + VE A+++E AG +AVHGRT +Q +G A W+ I V
Sbjct: 132 IEKPVTVKIRKGFDDDHINAVEIAKIIEDAGGAAVAVHGRTREQ--YYSGKADWDIIRQV 189
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
++A++IPVI NG++ +TG GVM G NP +F
Sbjct: 190 KEAVSIPVIGNGDVISGEKALQMRRETGCDGVMIGRGAQGNPWIF 234
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 30/205 (14%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
+ILAPM ++LP+RLL + G+ L M+SA K + +L PE+ P+ +Q
Sbjct: 12 YILAPMAGVTDLPFRLLCKEQGAGLLCMEMISAKALQYKNKNTKALLAIHPEEYPVSLQ- 70
Query: 141 TIFPRLGSPRFILAPMVDA-SELPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQE 195
GS I++ M ELP+++L G C P V + + KL E
Sbjct: 71 ----LFGSDPKIMSEMAKMIEELPFQILDINMG---CPVPKVVRNGEGSALMKNPKLVHE 123
Query: 196 IL--MSTPEDRPLIIQF---CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGA 250
I+ +S ++P+ ++ +D N E AK+ E G V R
Sbjct: 124 IVSAVSKAIEKPVTVKIRKGFDDDHINAVEIAKIIEDAG-------GAAVAVHGRTREQY 176
Query: 251 YL-QDDWPLLTNLVSSLRQAVQVPV 274
Y + DW +++ +++AV +PV
Sbjct: 177 YSGKADW----DIIRQVKEAVSIPV 197
>gi|150009773|ref|YP_001304516.1| TIM-barrel enzyme [Parabacteroides distasonis ATCC 8503]
gi|149938197|gb|ABR44894.1| putative TIM-barrel enzyme [Parabacteroides distasonis ATCC 8503]
Length = 329
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 145/288 (50%), Gaps = 23/288 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D +++ +RL+ +R+G+ + YT VS+ I Q+ L + ++RP
Sbjct: 8 LGERPVFLAPMEDVTDISFRLMCKRFGADMVYTEFVSSDALIRSVNKTQQKLNVSDDERP 67
Query: 206 LIIQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D ++ EAA++ E D +DIN GCP + VA +G GA + + PL+ +
Sbjct: 68 VAIQIYGKDVASMVEAARICEEARPDILDINFGCPVKKVAGKGA-GAGMLRNIPLMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV +PV+ K R+ D + V+ A L+ G L++HGRT Q M TG A W
Sbjct: 127 REVVKAVNIPVTVKTRLGWDADNRVIVDLAEQLQDCGIAALSIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I AV+ + IP+I NG++ + GV VM ++ P +F
Sbjct: 185 TLIRAVKNNPRMQIPIIGNGDVTSAEICKQRFEDYGVDAVMIGRASIGRPWIFREVKHYL 244
Query: 373 -TGQTRPAWELASEYLDL----VAQYPVRLQYARGHVFNMCHHLLTLP 415
TG+ P E S YLD+ V Q RL RG + ++ HL P
Sbjct: 245 TTGELLPQ-EPFSWYLDILKKQVEQSVERLDERRG-ILHIRRHLAATP 290
Score = 48.1 bits (113), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LG LAPM D +++ +RL+ +R+G+ + YT VS+ I Q+ L + ++RP
Sbjct: 8 LGERPVFLAPMEDVTDISFRLMCKRFGADMVYTEFVSSDALIRSVNKTQQKLNVSDDERP 67
Query: 136 LIIQ 139
+ IQ
Sbjct: 68 VAIQ 71
>gi|281208917|gb|EFA83092.1| chaperonin containing TCP1 beta subunit [Polysphondylium pallidum
PN500]
Length = 853
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 116/208 (55%), Gaps = 4/208 (1%)
Query: 139 QRTIFPRLGSPRF--ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEI 196
++T+ R+ + F I APMV S LP+RLL +++G + Y+PM+ A F R
Sbjct: 55 KKTLLERVNNGEFMKIAAPMVRFSRLPFRLLCKKWGCDITYSPMILAEAFNRSAYARDSD 114
Query: 197 LMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
+ D LI+QF N ++ L AA+ HC G+DIN GCPQ + YGA L
Sbjct: 115 FSTNIFDDSLIVQFAANSAEELAAAAEKVAKHCQGVDINCGCPQKWVMKEGYGANLLQHP 174
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
+T++V + V +P S KIR+ +++ KTVE R E +G LAVHGRT QR +
Sbjct: 175 QKITDMVKQVNNRVGIPCSIKIRVDKNLQKTVELVRQAEASGVSWLAVHGRTSSQRSSHP 234
Query: 317 GLASWEHITAVRKALTIPVIANGNIQCL 344
+E I V+++++IPV ANG+I L
Sbjct: 235 --VDYEAIKLVKESVSIPVFANGDIFTL 260
Score = 43.9 bits (102), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
I APMV S LP+RLL +++G + Y+PM+ A F R + D LI+Q
Sbjct: 70 IAAPMVRFSRLPFRLLCKKWGCDITYSPMILAEAFNRSAYARDSDFSTNIFDDSLIVQ 127
>gi|295110733|emb|CBL24686.1| tRNA-U20-dihydrouridine synthase [Ruminococcus obeum A2-162]
Length = 321
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 139/274 (50%), Gaps = 15/274 (5%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
FILAPM ++LP+R+L + G+ L T MVSA K ++ P + P+ +Q
Sbjct: 16 FILAPMAGVTDLPFRMLCKEQGAGLLCTEMVSAKAISFHNKNTISLMQIDPSEHPVSMQI 75
Query: 211 CGNDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G++ + E AK + E D +DIN+GCP G+ L + L+ +V+ + A
Sbjct: 76 FGSEPDLMAEVAKSIEEQPFDILDINMGCPVPKVVNNGEGSALLKNPELIREIVTQVSHA 135
Query: 270 VQVPVSCKIRI-YQDV-NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
V+ PV+ KIRI ++D VE A+++E +G +AVHGRT Q G A W+ I +
Sbjct: 136 VKKPVTAKIRIGFEDYPVDPVEIAKIIEDSGAAAVAVHGRTRQQ--YYAGEADWDTIRRI 193
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQT--R 377
++A++IPVI NG++ E + +TG GVM NP +F TG+ R
Sbjct: 194 KEAVSIPVIGNGDVDSPKKAEKLVRETGCDGVMIGRAVRGNPWIFREMNHYFTTGELLPR 253
Query: 378 PAWELASEYLDLVAQYPVRLQYARGHVFNMCHHL 411
P+WE E + + + L+ + M H+
Sbjct: 254 PSWEEIKEMILRHTRMQIELKGEFTGIREMRKHI 287
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
FILAPM ++LP+R+L + G+ L T MVSA K ++ P + P+ +Q
Sbjct: 16 FILAPMAGVTDLPFRMLCKEQGAGLLCTEMVSAKAISFHNKNTISLMQIDPSEHPVSMQ- 74
Query: 141 TIFPRLGSPRFILAPMVDA-SELPWRLLSRRYGSHLCYTPMV 181
IF GS ++A + + E P+ +L G C P V
Sbjct: 75 -IF---GSEPDLMAEVAKSIEEQPFDILDINMG---CPVPKV 109
>gi|424665655|ref|ZP_18102691.1| hypothetical protein HMPREF1205_01530 [Bacteroides fragilis HMW
616]
gi|404573908|gb|EKA78659.1| hypothetical protein HMPREF1205_01530 [Bacteroides fragilis HMW
616]
Length = 325
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 159/322 (49%), Gaps = 35/322 (10%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D ++L +RL+ +++G+ + YT VS+ I + L E+RP
Sbjct: 8 LGERPVFLAPMEDVTDLAFRLMCKKFGADMVYTEFVSSDALIRSVNKTTQKLTICDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D++ + AA++ E D +DIN GCP + VA +G LQ + P + +
Sbjct: 68 VAIQIYGKDTEAMVGAARIVEEAQPDILDINFGCPVKKVAGKGAGAGMLQ-NIPKMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
++ AV++PV+ K R+ D + V+ A L+ G LA+HGRT Q M TG A W
Sbjct: 127 RAVVDAVKIPVTVKTRLGWDADHKIIVDLAEQLQDCGIAALAIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I V+ + IP+I NG++ + C + GV +M G++ P +F
Sbjct: 185 TLIGEVKNNPRMHIPIIGNGDVTSATGAKECFERYGVDAIMIGRGSIGRPWIFREVKHYL 244
Query: 373 -TGQTRP--AWE-----LASEYLDLVAQYPVRLQYARGHVFNMCHHLLT------LPENS 418
TG+ P ++E L E L+ VA RL RG + ++ HL +P
Sbjct: 245 ETGEELPQESFEWYLNVLREEVLNSVA----RLDERRG-IIHIRRHLAATPLFKGIPNFR 299
Query: 419 DVRLLVGKTNHIKDLRKAVDML 440
+ R+ + +T +++L + D L
Sbjct: 300 ETRIAMLRTESVEELFRIFDGL 321
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
LG LAPM D ++L +RL+ +++G+ + YT VS+ I + L E+R
Sbjct: 7 DLGERPVFLAPMEDVTDLAFRLMCKKFGADMVYTEFVSSDALIRSVNKTTQKLTICDEER 66
Query: 135 PLIIQ 139
P+ IQ
Sbjct: 67 PVAIQ 71
>gi|294495034|ref|YP_003541527.1| hypothetical protein Mmah_0350 [Methanohalophilus mahii DSM 5219]
gi|292666033|gb|ADE35882.1| TIM-barrel protein, nifR3 family [Methanohalophilus mahii DSM 5219]
Length = 317
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 128/232 (55%), Gaps = 9/232 (3%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
RLG +LAPM + + L +R++ RR G+ +T MV++ + + ++ S ++
Sbjct: 7 RLGG-NLLLAPMAEVTNLAYRVVCRRRGASFAFTEMVNSEAILHGNRKSYQMASSCADEG 65
Query: 205 PLIIQFCGNDSKNLTEAAKLAE----PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
IQ GN ++ +AA + E P IDIN GCP ++ G+ L + +L
Sbjct: 66 IFGIQIFGNSPVSMAKAAGILENTKFPSI--IDINAGCPSPRIRKTGAGSMLMEKPDVLE 123
Query: 261 NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320
N+V + ++V VPV+ KIR+++DV++TVE A LE AG + VHGRT Q+ +GLA
Sbjct: 124 NIVRCVVESVTVPVTVKIRVFRDVSQTVELASRLENAGASAITVHGRTATQQ--YSGLAD 181
Query: 321 WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
+ +++ L+IPVIANG+I+ A L TG G+M + +P +F
Sbjct: 182 HLYARRIKEELSIPVIANGDIRNGAFAAQLLEYTGCDGLMIGRAAMGDPDVF 233
>gi|256383848|gb|ACU78418.1| tRNA-dihydrouridine synthase B [Mycoplasma mycoides subsp. capri
str. GM12]
gi|256384679|gb|ACU79248.1| tRNA-dihydrouridine synthase B [Mycoplasma mycoides subsp. capri
str. GM12]
gi|296455465|gb|ADH21700.1| tRNA-dihydrouridine synthase B [synthetic Mycoplasma mycoides
JCVI-syn1.0]
Length = 324
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 150/304 (49%), Gaps = 21/304 (6%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ + PM S +R++S+++G+ L Y MVS + D K +L + P+ +Q
Sbjct: 11 KVVQGPMAGVSNEAFRIISKQHGASLVYAEMVSVAGMVHDNKKTLNMLNVNEIEHPMSMQ 70
Query: 210 FCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSL 266
GND +A + E + CD ID+N+GCP VA R G+ L L+ +V ++
Sbjct: 71 IFGNDVDEFIKATQWIEKNVDCDIIDLNLGCPAPKVAIRSQSGSALLKTPDLIYEIVKNV 130
Query: 267 RQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
+ PV+ KIR+ D N VE A+++E+AG +AVH RT + TG A WE I
Sbjct: 131 VKNTTKPVTAKIRLGWDKNSVNAVEVAKLIEKAGASAIAVHART--RNDFYTGHADWEKI 188
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQ- 375
V++A++IPVI NG++ + L +TG VM + NP +F TG+
Sbjct: 189 KEVKQAVSIPVIGNGDVIDAKSAKKMLDETGCDAVMVSRACQGNPWIFDQINHYLKTGKE 248
Query: 376 -TRPAWE----LASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHI 430
+P++E ++LDL+ + + ++ +L L + ++L K N I
Sbjct: 249 LEKPSFEEWKTTVLQHLDLLVKLKTEQHAIKEFRKHLTWYLDVLNNKALTKILKEKANKI 308
Query: 431 KDLR 434
+ ++
Sbjct: 309 ETIK 312
>gi|254877184|ref|ZP_05249894.1| tRNA-dihydrouridine synthase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254843205|gb|EET21619.1| tRNA-dihydrouridine synthase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 324
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 99/316 (31%), Positives = 159/316 (50%), Gaps = 29/316 (9%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM + +R + + +G+ L YT MVS + E+L ++PL IQ
Sbjct: 15 VLAPMAGFCDSAFRTICKEHGAGLIYTEMVSNKAVVERNWETMEMLYMENIEKPLGIQIF 74
Query: 212 GNDSKNLTEAAK-LAE-PHCDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G D + A K +AE CD +DIN+GCP VAK+ GA L D + +++++ +
Sbjct: 75 GTDIDSFVGATKYIAENTECDFLDINMGCPMPKVAKKLQAGAALLKDVDKIHEILTAVVK 134
Query: 269 AVQVPVSCKIRI-YQDVN-KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV PV+ K+RI + D N +E A+ E AG +A+HGRT +Q M TG A+W+ I
Sbjct: 135 AVHKPVTVKMRIGWDDENINAIEVAKACEDAGVSAIAIHGRTREQ--MYTGKANWDIIRD 192
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRP 378
VRKA+ VI NG++ C +A + TGV VM + NP +F TG+ P
Sbjct: 193 VRKAVDTVVIGNGDVFCPHSAKAMMEHTGVDAVMVGRASRGNPWIFRQIAEYLNTGELIP 252
Query: 379 ------AWELASEYLDLVAQYPVRLQYARGHVFNMCHH----LLTLPENSDVRLLVGKTN 428
E+ E+L + ++L+ A+ V + H L LP + + R+ + +
Sbjct: 253 PPTPVERVEVLGEHL----RRLIKLKTAKVAVKEIRTHASFYLADLPGSKEFRMKLNQLE 308
Query: 429 HIKDLRKAVDMLRERF 444
H +++ + ++ F
Sbjct: 309 HEREIFRVLEEYSNSF 324
>gi|313149838|ref|ZP_07812031.1| dehydrogenase [Bacteroides fragilis 3_1_12]
gi|313138605|gb|EFR55965.1| dehydrogenase [Bacteroides fragilis 3_1_12]
Length = 325
Score = 131 bits (329), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 159/322 (49%), Gaps = 35/322 (10%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D ++L +RL+ +++G+ + YT VS+ I + L E+RP
Sbjct: 8 LGERPVFLAPMEDVTDLAFRLMCKKFGADMVYTEFVSSDALIRSVNKTTQKLTICDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D++ + AA++ E D +DIN GCP + VA +G LQ + P + +
Sbjct: 68 VAIQIYGKDTEAMVGAARIVEEAQPDILDINFGCPVKKVAGKGAGAGMLQ-NIPKMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
++ AV++PV+ K R+ D + V+ A L+ G LA+HGRT Q M TG A W
Sbjct: 127 RAVVDAVKIPVTVKTRLGWDADHKIIVDLAEQLQDCGIAALAIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I V+ + IP+I NG++ + C + GV +M G++ P +F
Sbjct: 185 TLIGEVKNNPRMHIPIIGNGDVTSATGAKECFERYGVDAIMIGRGSIGRPWIFREVKYYL 244
Query: 373 -TGQTRP--AWE-----LASEYLDLVAQYPVRLQYARGHVFNMCHHLLT------LPENS 418
TG+ P ++E L E L+ VA RL RG + ++ HL +P
Sbjct: 245 ETGEELPQESFEWYLNVLREEVLNSVA----RLDERRG-IIHIRRHLAATPLFKGIPNFR 299
Query: 419 DVRLLVGKTNHIKDLRKAVDML 440
+ R+ + +T +++L + D L
Sbjct: 300 ETRIAMLRTESVEELFRIFDGL 321
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
LG LAPM D ++L +RL+ +++G+ + YT VS+ I + L E+R
Sbjct: 7 DLGERPVFLAPMEDVTDLAFRLMCKKFGADMVYTEFVSSDALIRSVNKTTQKLTICDEER 66
Query: 135 PLIIQ 139
P+ IQ
Sbjct: 67 PVAIQ 71
>gi|220926307|ref|YP_002501609.1| nifR3 family TIM-barrel protein [Methylobacterium nodulans ORS
2060]
gi|219950914|gb|ACL61306.1| TIM-barrel protein, nifR3 family [Methylobacterium nodulans ORS
2060]
Length = 357
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 146/297 (49%), Gaps = 28/297 (9%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQF---IADKKLRQEILMSTPEDRP 205
P +LAP+ ++L R ++RR G+ + MV+A F A+ +LR E P
Sbjct: 31 PGALLAPLSGVTDLHLRRIARRLGATAVVSEMVAAEDFARGTAEARLRAEGEGVLPH--- 87
Query: 206 LIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
++Q G D + E A+LAE + D ID+N+GCP G G+ L D L++
Sbjct: 88 -VVQLAGCDPHWMAEGARLAEANGADVIDVNMGCPAKKVTGGEAGSALMRDLDHAARLLA 146
Query: 265 SLRQAVQVPVSCKIRIYQD--VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
++R AV VPV+ K+R+ D E AR E G + VHGRT Q TG A W
Sbjct: 147 AVRGAVAVPVTVKMRLGWDHAALNAPELARRAEDLGLAAVTVHGRTRQQ--FYTGRADWA 204
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP----ALFTG-QTR 377
I AV + ++IPV+ANG++ L ACL +G A VM + P A+ G Q R
Sbjct: 205 AIRAVVETVSIPVVANGDVDGLEAARACLNASGAAAVMIGRAAVGRPWLVGAVAAGLQGR 264
Query: 378 PA--------WELASE-YLDLVAQY--PVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
A +LA E Y L+A+Y P+ +++AR H+ H LP RL+
Sbjct: 265 DAPDLTPAEQADLAVEHYEGLLARYGVPMGVRHARKHLAAYADHAGGLPAPERARLV 321
>gi|154336333|ref|XP_001564402.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061437|emb|CAM38463.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 512
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 128/258 (49%), Gaps = 30/258 (11%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ-EILMSTPEDRPLIIQ 209
FI APMV S +R + R +G+ + YT M+ A F+ R E + E+R L++Q
Sbjct: 117 FIQAPMVRCSRPAFRQVCRSWGTRIGYTHMLIAESFVKSPHARHAEFALYEGENR-LVVQ 175
Query: 210 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
+ EAA L P+CD ID+N GCPQ A + GA L D + ++V S+R A
Sbjct: 176 LAAKSGTDAAEAALLLRPYCDAIDLNCGCPQRWAMKDGIGAVLLDQPERVADMVRSIRNA 235
Query: 270 VQ-------------------------VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
+ +P K+RI D+ +V++AR E AG L V
Sbjct: 236 MPDGNTAPMMVSIGGACSSCPATAPPFLPCVVKMRIKDDLRNSVDFARQCEAAGASWLTV 295
Query: 305 HGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364
HGR+ + + +E + +R+ L++PV+ NG ++ ++ +TG G+M+A G
Sbjct: 296 HGRSATSQ--PSAAVQFEAVKLIRENLSVPVVLNGGVRDVSTAMEAALRTGCGGLMSANG 353
Query: 365 NLYNPALF-TGQTRPAWE 381
L NPA+F +G +R A E
Sbjct: 354 LLDNPAMFYSGASRAAME 371
>gi|403382768|ref|ZP_10924825.1| hypothetical protein PJC66_23412 [Paenibacillus sp. JC66]
Length = 338
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 123/227 (54%), Gaps = 6/227 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R +LAPM +RL+++ +G+ L MVS + + ++L ++PL +Q
Sbjct: 12 RVVLAPMAGVCNPAFRLIAKEFGTGLVCAEMVSDKAIVHGNERTMQMLYVDEREKPLSLQ 71
Query: 210 FCGNDSKNLTEAAKLAE--PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G D++ L EAAK+ + + D IDIN+GCP + GA D + ++S++
Sbjct: 72 IFGGDTETLVEAAKVVDRYTNADIIDINMGCPVPKITKCDAGARWLLDPSRIEQMISTVV 131
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+AV PV+ K+RI D + VE A+ +E G Q ++VHGRT Q M +G A+W+ I
Sbjct: 132 KAVSKPVTVKMRIGWDEDHIYAVENAKAVENGGGQAVSVHGRTRVQ--MYSGTANWDIIK 189
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
V++A++IPVI NG++ D L TG GVM G L NP +
Sbjct: 190 EVKEAVSIPVIGNGDVFTPEDAHRLLEHTGCDGVMIGRGALGNPWML 236
>gi|319900676|ref|YP_004160404.1| tRNA-U20-dihydrouridine synthase [Bacteroides helcogenes P 36-108]
gi|319415707|gb|ADV42818.1| tRNA-U20-dihydrouridine synthase [Bacteroides helcogenes P 36-108]
Length = 332
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 152/317 (47%), Gaps = 29/317 (9%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG +LAPM D ++ +RL+ +++G+ + YT VSA I ++ L + E+RP
Sbjct: 8 LGEYPVLLAPMEDVTDPAFRLMCKQFGADMVYTEFVSADALIRSVSKTEQKLNISTEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D++ + EAA++ E H D +DIN GCP + VA +G LQ + PL+ +
Sbjct: 68 VAIQIYGKDTETMVEAARIVEQAHPDILDINFGCPVKRVAGKGAGAGMLQ-NIPLMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
++ AV++PV+ K R+ D + V+ A L+ G L +HGRT Q M TG A W
Sbjct: 127 RAVVDAVKIPVTVKTRLGWDADHKIIVDLAEQLQDCGIAALTIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I V+K + IPVI NG+I + C GV +M + P F
Sbjct: 185 TLIGEVKKNPRMHIPVIGNGDITTPERAKECFDLYGVDAIMIGRASFGRPWFFKEVRHYL 244
Query: 373 -TGQT----RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLT------LPENSDVR 421
TG+ P W+L L + V L R + ++ HL +P D R
Sbjct: 245 ETGEELPPLSPEWKL--NVLRREVEDSVNLLDERRGILHVRRHLAASPLFKGIPNFRDTR 302
Query: 422 LLVGKTNHIKDLRKAVD 438
+ + + ++L + D
Sbjct: 303 IAMLRAETKEELYRIFD 319
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 72 AWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP 131
A LG +LAPM D ++ +RL+ +++G+ + YT VSA I ++ L +
Sbjct: 4 ANIDLGEYPVLLAPMEDVTDPAFRLMCKQFGADMVYTEFVSADALIRSVSKTEQKLNIST 63
Query: 132 EDRPLIIQ 139
E+RP+ IQ
Sbjct: 64 EERPVAIQ 71
>gi|403165575|ref|XP_003325561.2| hypothetical protein PGTG_07394 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165780|gb|EFP81142.2| hypothetical protein PGTG_07394 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 310
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 86/252 (34%), Positives = 121/252 (48%), Gaps = 15/252 (5%)
Query: 156 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR--------PLI 207
MV S+LP+R L Y +H+ +TPM+ A +F K R + +R PL+
Sbjct: 1 MVRYSKLPFRQLVSEYETHITFTPMILAQEFCLSAKARDSDFSTNAAERGIFLMQESPLV 60
Query: 208 IQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
QF G+D + AA L + + DGIDIN GCPQ A + G+ L L+ LV S++
Sbjct: 61 AQFGGHDPFYMGHAAALIKKYVDGIDINCGCPQQWAYKEGIGSALLRKPDLVRELVRSIK 120
Query: 268 QAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR-----GMNTGLAS 320
+ PVS KIRI D+ T + + +A ++ VHGRT Q + + +
Sbjct: 121 VSCGEDFPVSIKIRIDDDLRNTSQLIKTAIQANVSMITVHGRTRRQASSYPVNLESIKFA 180
Query: 321 WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAW 380
E + +PV+ANG+I L D GV GVM+A G NPALF G R
Sbjct: 181 NEEARSSSHGTRVPVVANGDIFSLDDARKTREMCGVHGVMSARGLQENPALFAGYDRIPL 240
Query: 381 ELASEYLDLVAQ 392
+L L AQ
Sbjct: 241 AGIQRFLSLSAQ 252
>gi|408380321|ref|ZP_11177905.1| tRNA-dihydrouridine synthase [Agrobacterium albertimagni AOL15]
gi|407745534|gb|EKF57066.1| tRNA-dihydrouridine synthase [Agrobacterium albertimagni AOL15]
Length = 333
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 136/250 (54%), Gaps = 12/250 (4%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R +LAPM ++LP+R L+ R+G+ L T MV++ + + + L P ++Q
Sbjct: 20 RIVLAPMSGVTDLPFRQLAFRFGAGLVVTEMVASRELVFNAAESWSRLKGAGLT-PHMVQ 78
Query: 210 FCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G ++K L EAA +AE + D IDIN+GCP G+ G+ L + +L+ + +
Sbjct: 79 LAGREAKWLAEAAVIAEANGADIIDINMGCPAKKVIGGYAGSALMREPDHALSLIEATVK 138
Query: 269 AVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV++PV+ K+R+ D + A E AG QL+ VHGRT Q G A+W+ I A
Sbjct: 139 AVKIPVTVKMRLGWDETSINAPDIAARAEAAGVQLITVHGRTRMQ--FYEGKANWDAIAA 196
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA---EGNLYNPALFTGQTRPAWELA 383
VR+A+ IP+IANG+++ + D L ++G VM +G ++ + G PA A
Sbjct: 197 VREAIRIPLIANGDVETVEDAHDILRRSGADAVMIGRGCQGRPWHAGVLAGHAGPA---A 253
Query: 384 SEYLDLVAQY 393
SE D+V ++
Sbjct: 254 SEMSDVVVEH 263
>gi|387132437|ref|YP_006298409.1| nifR3 family TIM-barrel protein [Prevotella intermedia 17]
gi|386375285|gb|AFJ08326.1| TIM-barrel protein, nifR3 family [Prevotella intermedia 17]
Length = 323
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 123/239 (51%), Gaps = 9/239 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
G LAPM D +++ +R + +R+G+ + YT VSA I K ++ E+RP
Sbjct: 8 FGERPLFLAPMEDVTDIGFRKMCKRFGAAMVYTEFVSADAVIRSIKSTLNKIVIDEEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D +++ EAAK+ E D IDIN GCP + VA +G G+ + + PLL +
Sbjct: 68 VGIQIYGKDVESMVEAAKIVEQVKPDVIDINFGCPVKKVANKGA-GSGMLKNIPLLLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV PV+ K R+ D N + + A L+ G Q L +HGRT Q M TG A W
Sbjct: 127 REVVKAVNTPVTVKTRLGWDDNNLIITDLAEQLQDCGIQALTIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRP 378
I V+K + IP+I NG++ +AD + GV VM P LF+ P
Sbjct: 185 TLIGEVKKNPRIHIPIIGNGDVTSVADAQKRFDSYGVDAVMIGRATFGCPWLFSETNAP 243
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
G LAPM D +++ +R + +R+G+ + YT VSA I K ++ E+R
Sbjct: 7 DFGERPLFLAPMEDVTDIGFRKMCKRFGAAMVYTEFVSADAVIRSIKSTLNKIVIDEEER 66
Query: 135 PLIIQ 139
P+ IQ
Sbjct: 67 PVGIQ 71
>gi|326911232|ref|XP_003201965.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Meleagris
gallopavo]
Length = 262
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 121/233 (51%), Gaps = 6/233 (2%)
Query: 194 QEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 253
Q+++ D PLI+QF +++ L +AA L P DG+D+N GCPQ A YGA L
Sbjct: 15 QQLVTLHDSDNPLIVQFAAKEAQVLCDAALLVCPFADGVDLNCGCPQRWAMAEGYGACLI 74
Query: 254 DDWPLLTNLVSSLRQAVQVP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVD 310
+ L+ ++V +R + P VS KIRI++D+ KTV+ + E G + VHGR +
Sbjct: 75 NKPELVQDMVRHVRNRIDNPRFSVSIKIRIHEDLKKTVDLCKKAEATGVSWITVHGRNTE 134
Query: 311 QRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+R ++ I +++++ IPV+ANG+I+ L D E TG GVM A G L NPA
Sbjct: 135 ERHQPV---HYDAIKVIKESMHIPVVANGDIKSLKDAENVHRLTGADGVMVARGLLANPA 191
Query: 371 LFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+F G + +++D+ ++ H+ M + + E +L
Sbjct: 192 MFAGYEETPLKCIQDWVDIALEHGTPFTCFHHHLMYMMERITSKQEKKVFNVL 244
>gi|212637921|ref|YP_002314441.1| tRNA-dihydrouridine synthase [Anoxybacillus flavithermus WK1]
gi|212559401|gb|ACJ32456.1| tRNA-dihydrouridine synthase [Anoxybacillus flavithermus WK1]
Length = 351
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 128/252 (50%), Gaps = 17/252 (6%)
Query: 133 DRPLIIQRTIFPRLGSPRF-----------ILAPMVDASELPWRLLSRRYGSHLCYTPMV 181
++P RTI + G+ F +LAPM +RL + +G+ L MV
Sbjct: 2 EKPRSSGRTIIRKGGNLMFKIGNVQINNPVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMV 61
Query: 182 SAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH--CDGIDINIGCP 239
S + + +L ++PL +Q G + + L +AAK + H D IDIN+GCP
Sbjct: 62 SDKAILFNNPKTMGMLYIDEREKPLSLQIFGGEKETLVQAAKYVDQHTNADIIDINMGCP 121
Query: 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNK--TVEYARMLERA 297
+ GA D + ++V+++ AV+ PV+ K+RI D N VE A+ +ERA
Sbjct: 122 VPKITKCDAGAKWLLDPNKIYDMVAAVVDAVEKPVTVKMRIGWDENHIYAVENAQAVERA 181
Query: 298 GCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVA 357
G Q +AVHGRT Q M G A W I V++A+ IPVI NG++Q D + L QTGV
Sbjct: 182 GGQAVAVHGRTRVQ--MYEGKADWNVIKQVKEAVRIPVIGNGDVQTPQDAKRMLEQTGVD 239
Query: 358 GVMTAEGNLYNP 369
GVM L NP
Sbjct: 240 GVMIGRAALGNP 251
>gi|403386083|ref|ZP_10928140.1| tRNA-dihydrouridine synthase 1 [Kurthia sp. JC30]
Length = 340
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 100/306 (32%), Positives = 144/306 (47%), Gaps = 26/306 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R +LAPM +RL + +G+ L Y M+S + K +L + PL +Q
Sbjct: 18 RVVLAPMAGVCNSAFRLTVKEFGAGLVYAEMISDKGIVQRNKKTMSMLYIDERENPLSLQ 77
Query: 210 FCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G D + L EAAK + + D IDIN+GCP + GA D + +VS++
Sbjct: 78 IFGGDKETLVEAAKYVDQYTTADIIDINMGCPVNKIIKCEAGAKWLLDPNKIYEMVSAVT 137
Query: 268 QAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV PVSCK+RI D + VE A+ ERAG +A+HGRT Q+ G A+W+ +
Sbjct: 138 DAVSKPVSCKMRIGWDEDHVFAVENAQAAERAGASAIAMHGRTRLQQ--YDGHANWDILK 195
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP--------ALFTGQ-- 375
V++ + IP IANG+++ D + L TG GVM L NP L TG+
Sbjct: 196 DVKENINIPFIANGDVETPEDAQRILEHTGADGVMIGRAALGNPWMIYRTVEYLKTGKLV 255
Query: 376 ----TRPAWELASEYLD-LVAQYPVRLQY--ARGHVFNMCHHLLTLPENSDVRLLVGKTN 428
R E+ + + LVA P R+ RGH +L + N +R LV N
Sbjct: 256 GEPSIRKKMEVCLLHFERLVALKPERVAVLEMRGHA---SWYLKNIRGNGKIRKLVNTAN 312
Query: 429 HIKDLR 434
+ R
Sbjct: 313 TADEFR 318
>gi|393785777|ref|ZP_10373923.1| hypothetical protein HMPREF1068_00203 [Bacteroides nordii
CL02T12C05]
gi|392661396|gb|EIY54982.1| hypothetical protein HMPREF1068_00203 [Bacteroides nordii
CL02T12C05]
Length = 326
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 159/323 (49%), Gaps = 35/323 (10%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D ++ +RL+ +++G+ + YT VS+ I + L E+RP
Sbjct: 8 LGERPVFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSSDALIRSVNKTTQKLSICDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D++ + AA++ E D +DIN GCP + VA +G LQ + P + +
Sbjct: 68 VAIQIYGKDTEAMVGAARIVEEAQPDILDINFGCPVKKVAGKGAGAGMLQ-NIPKMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
++ AV++PV+ K R+ D + V+ A L+ G LA+HGRT Q M TG A W
Sbjct: 127 RAVVDAVKIPVTVKTRLGWDADHKIIVDLAEQLQDCGIAALAIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I V+ + IP+I NG++ +A +AC + GV +M G++ P +F
Sbjct: 185 TLIGEVKNNPRMHIPIIGNGDVTSVATAKACFDRYGVDAIMIGRGSIGRPWIFREVKHYL 244
Query: 373 -TGQTRP----AWELA---SEYLDLVAQYPVRLQYARGHVFNMCHHLLT------LPENS 418
TG P W L E L+ VA RL RG + ++ HL +P
Sbjct: 245 ETGTELPPETFEWYLNVLREEVLNSVA----RLDERRG-IIHIRRHLAATPLFKGIPNFR 299
Query: 419 DVRLLVGKTNHIKDLRKAVDMLR 441
+ R+ + +T +++L + D ++
Sbjct: 300 ETRIAMLRTESVEELFRIFDKIK 322
Score = 42.0 bits (97), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
LG LAPM D ++ +RL+ +++G+ + YT VS+ I + L E+R
Sbjct: 7 DLGERPVFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSSDALIRSVNKTTQKLSICDEER 66
Query: 135 PLIIQ 139
P+ IQ
Sbjct: 67 PVAIQ 71
>gi|53715845|ref|YP_101837.1| hypothetical protein BF4566 [Bacteroides fragilis YCH46]
gi|60683764|ref|YP_213908.1| TIM-barrel protein, dihydrouridine synthase [Bacteroides fragilis
NCTC 9343]
gi|265764712|ref|ZP_06092987.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|336407524|ref|ZP_08588021.1| hypothetical protein HMPREF1018_00035 [Bacteroides sp. 2_1_56FAA]
gi|375360668|ref|YP_005113440.1| dihydrouridine synthase [Bacteroides fragilis 638R]
gi|383116343|ref|ZP_09937093.1| nifR3 family putative TIM-barrel protein [Bacteroides sp. 3_2_5]
gi|423259675|ref|ZP_17240598.1| hypothetical protein HMPREF1055_02875 [Bacteroides fragilis
CL07T00C01]
gi|423263350|ref|ZP_17242353.1| hypothetical protein HMPREF1056_00040 [Bacteroides fragilis
CL07T12C05]
gi|423270103|ref|ZP_17249075.1| hypothetical protein HMPREF1079_02157 [Bacteroides fragilis
CL05T00C42]
gi|423272441|ref|ZP_17251388.1| hypothetical protein HMPREF1080_00041 [Bacteroides fragilis
CL05T12C13]
gi|423282688|ref|ZP_17261573.1| hypothetical protein HMPREF1204_01111 [Bacteroides fragilis HMW
615]
gi|52218710|dbj|BAD51303.1| putative TIM-barrel enzyme [Bacteroides fragilis YCH46]
gi|60495198|emb|CAH10019.1| putative TIM-barrel protein, possible dihydrouridine synthase
[Bacteroides fragilis NCTC 9343]
gi|251948400|gb|EES88682.1| nifR3 family putative TIM-barrel protein [Bacteroides sp. 3_2_5]
gi|263254096|gb|EEZ25530.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|301165349|emb|CBW24921.1| putative TIM-barrel protein, possible dihydrouridine synthase
[Bacteroides fragilis 638R]
gi|335947428|gb|EGN09219.1| hypothetical protein HMPREF1018_00035 [Bacteroides sp. 2_1_56FAA]
gi|387775985|gb|EIK38088.1| hypothetical protein HMPREF1055_02875 [Bacteroides fragilis
CL07T00C01]
gi|392699648|gb|EIY92822.1| hypothetical protein HMPREF1079_02157 [Bacteroides fragilis
CL05T00C42]
gi|392707645|gb|EIZ00761.1| hypothetical protein HMPREF1056_00040 [Bacteroides fragilis
CL07T12C05]
gi|392708871|gb|EIZ01973.1| hypothetical protein HMPREF1080_00041 [Bacteroides fragilis
CL05T12C13]
gi|404582256|gb|EKA86951.1| hypothetical protein HMPREF1204_01111 [Bacteroides fragilis HMW
615]
Length = 324
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 156/319 (48%), Gaps = 29/319 (9%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D ++ +RL+ +++G+ + YT VS+ I + L E+RP
Sbjct: 8 LGERPVFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSSDALIRSVNKTTQKLTICDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D++ + AA++ E D +DIN GCP + VA +G LQ + P + +
Sbjct: 68 VAIQIYGKDTEAMVGAARIVEEAQPDILDINFGCPVKKVAGKGAGAGMLQ-NIPKMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
++ AV++PV+ K R+ D + V+ A L+ G LA+HGRT Q M TG A W
Sbjct: 127 RAVVDAVKIPVTVKTRLGWDADHKIIVDLAEQLQDCGIAALAIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I V+ + IP+I NG++ A + C + GV +M G++ P +F
Sbjct: 185 TLIGEVKNNPRMHIPIIGNGDVTTAAGAKECFERYGVDAIMIGRGSIGRPWIFREVKHYL 244
Query: 373 -TGQTRPAWELASEYLDL----VAQYPVRLQYARGHVFNMCHHLLT------LPENSDVR 421
TG+ P E YLD+ V RL RG + ++ HL +P + R
Sbjct: 245 ETGEELPR-ESFEWYLDVLREEVLNSVARLDERRG-IIHIRRHLAATPLFKGIPNFRETR 302
Query: 422 LLVGKTNHIKDLRKAVDML 440
+ + +T +++L + D L
Sbjct: 303 IAMLRTESVEELFRIFDGL 321
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
LG LAPM D ++ +RL+ +++G+ + YT VS+ I + L E+R
Sbjct: 7 DLGERPVFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSSDALIRSVNKTTQKLTICDEER 66
Query: 135 PLIIQ 139
P+ IQ
Sbjct: 67 PVAIQ 71
>gi|293399909|ref|ZP_06644055.1| zinc-binding TIM-barrel protein, nifR3 family [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291306309|gb|EFE47552.1| zinc-binding TIM-barrel protein, nifR3 family [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 338
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 128/245 (52%), Gaps = 10/245 (4%)
Query: 132 EDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK 191
+D+ I+ P + ++APM S +R++ +++G+ L YT MVS + +
Sbjct: 2 QDKSWKIRDITIPN----QVVIAPMAGISNPAFRVICKQFGAGLIYTEMVSDKALYYENE 57
Query: 192 LRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYG 249
+ E+ PL +Q G+D + + AAKL + CD IDIN+GCP + + G
Sbjct: 58 KTLHMTAVEKEEHPLTMQIFGHDIETMVYAAKLLDEKSDCDIIDINMGCPVNKIIKSNAG 117
Query: 250 AYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGR 307
+ L D + ++ +V+ PV+ K+RI D++ VE A+ L G LAVHGR
Sbjct: 118 SALMKDIDHAVTMTKAVVDSVKKPVTVKMRIGWDMDSINCVELAKGLASVGVSALAVHGR 177
Query: 308 TVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367
T Q M G A W++I AV++A++IPV+ NG+I+ D + L TG +M G L
Sbjct: 178 TRKQ--MYEGKADWQYIKAVKQAVSIPVMGNGDIRSSEDAKRMLDTTGCDAIMVGRGVLG 235
Query: 368 NPALF 372
+P L
Sbjct: 236 DPWLI 240
>gi|78186164|ref|YP_374207.1| dihydrouridine synthase TIM-barrel protein nifR3 [Chlorobium
luteolum DSM 273]
gi|78166066|gb|ABB23164.1| tRNA-U20-dihydrouridine synthase [Chlorobium luteolum DSM 273]
Length = 354
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 131/230 (56%), Gaps = 13/230 (5%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI--ADKKLRQEILMSTPEDRPLIIQ 209
ILAPM D ++ +R L +R+G+ + YT VSA +K +R+ L + P +RPL +Q
Sbjct: 13 ILAPMEDVTDRAFRQLCKRHGADIVYTEFVSAEALRRGIEKTVRK--LKADPVERPLAVQ 70
Query: 210 FCGNDSKNLTEAAKLAEP-HCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G+ +++ EAA +AE D +DIN GCP + VA +G GA L + + + ++
Sbjct: 71 IFGSTVESMVEAAVIAEEFQPDYLDINFGCPTKKVAGKGA-GAALLKEPEKMAAIAEAVV 129
Query: 268 QAVQVPVSCKIRI---YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
+AV++PV+ K RI ++ +N ++ R LE AG Q LA+HGRT + M G A W I
Sbjct: 130 KAVRLPVTAKTRIGWDHESIN-ILDVLRRLEDAGIQALALHGRT--RSDMYKGKADWGWI 186
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG 374
++ IP+IANG++ D +TG GVM G++ NP +F+G
Sbjct: 187 AEAKRHARIPLIANGDVWSPEDALRMFLETGADGVMIGRGSIGNPFIFSG 236
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI--ADKKLRQEILMSTPEDRPLIIQ 139
ILAPM D ++ +R L +R+G+ + YT VSA +K +R+ L + P +RPL +Q
Sbjct: 13 ILAPMEDVTDRAFRQLCKRHGADIVYTEFVSAEALRRGIEKTVRK--LKADPVERPLAVQ 70
>gi|327398323|ref|YP_004339192.1| dihydrouridine synthase DuS [Hippea maritima DSM 10411]
gi|327180952|gb|AEA33133.1| dihydrouridine synthase DuS [Hippea maritima DSM 10411]
Length = 320
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 115/231 (49%), Gaps = 4/231 (1%)
Query: 143 FPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE 202
FP + LAPM ++ P+R L R +G L ++ ++S + K +++
Sbjct: 4 FPLKIKSNYFLAPMAGYTDKPFRKLCREFGCGLTFSELISVNAIYYKNKKTLKLIERDIT 63
Query: 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 262
D+P IQ G+D + AA+ EP CD IDIN GCP R G+YL + L ++
Sbjct: 64 DKPYCIQLFGSDERLFLYAAQFVEPFCDCIDINAGCPAPKVIRAKAGSYLLKEPKKLISI 123
Query: 263 VSSLRQAVQVPVSCKIRI-YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+LR+ ++ P+S K+RI Y+ +N VE + LER+G + +HGR Q G +
Sbjct: 124 TQTLRKHLKKPLSIKMRIGYEKIN-PVELYKELERSGIDFITIHGRLKSQ--YFKGEVDY 180
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
HI + L+IPV+ANG I + TG +M + + P +F
Sbjct: 181 NHIGQINSVLSIPVVANGGIDSFKKAQQVKRITGCEYLMIGQAAIGKPFIF 231
>gi|323693199|ref|ZP_08107417.1| TIM-barrel protein [Clostridium symbiosum WAL-14673]
gi|355621639|ref|ZP_09046240.1| hypothetical protein HMPREF1020_00319 [Clostridium sp. 7_3_54FAA]
gi|323502682|gb|EGB18526.1| TIM-barrel protein [Clostridium symbiosum WAL-14673]
gi|354823446|gb|EHF07777.1| hypothetical protein HMPREF1020_00319 [Clostridium sp. 7_3_54FAA]
Length = 319
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 121/223 (54%), Gaps = 5/223 (2%)
Query: 153 LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCG 212
LAPM ++LP+RLL R G L T MVSA + + + + IL E+RP+ +Q G
Sbjct: 16 LAPMAGVTDLPFRLLCREQGCGLMCTEMVSAKALLYNNRNTKPILAVREEERPVAVQLFG 75
Query: 213 NDSKNLTEAA-KLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
+D +++ A +L E D ID+N+GCP G+ L + L +++S+ + +
Sbjct: 76 SDPDIMSDMALRLEEGPYDIIDVNMGCPVPKIVNNGEGSALMKNPKLAEAILTSMVKKLH 135
Query: 272 VPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK 329
PV+ K R D + VE+ARM E G +AVHGRT +Q +G A W+ I V++
Sbjct: 136 KPVTVKFRKGFDDSCVNAVEFARMAESCGVSAVAVHGRTREQ--YYSGKADWDIIRQVKE 193
Query: 330 ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
A+ IPVI NG+I D + + TG GVM A G NP LF
Sbjct: 194 AVKIPVIGNGDIFTPQDAKRMIDLTGCDGVMVARGAKGNPWLF 236
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 36/234 (15%)
Query: 83 LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTI 142
LAPM ++LP+RLL R G L T MVSA + + + + IL E+RP+ +Q
Sbjct: 16 LAPMAGVTDLPFRLLCREQGCGLMCTEMVSAKALLYNNRNTKPILAVREEERPVAVQ--- 72
Query: 143 FPRLGSPRFILAPM-VDASELPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQEIL 197
GS I++ M + E P+ ++ G C P + + + KL + IL
Sbjct: 73 --LFGSDPDIMSDMALRLEEGPYDIIDVNMG---CPVPKIVNNGEGSALMKNPKLAEAIL 127
Query: 198 MSTPED--RPLIIQF-CGNDSK--NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 252
S + +P+ ++F G D N E A++AE C ++ + +Y
Sbjct: 128 TSMVKKLHKPVTVKFRKGFDDSCVNAVEFARMAE-SC---GVSAVAVHGRTREQYYSG-- 181
Query: 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRIY--QDVNKTVEYARMLERAGCQLLAV 304
+ DW +++ +++AV++PV I+ QD RM++ GC + V
Sbjct: 182 KADW----DIIRQVKEAVKIPVIGNGDIFTPQDAK------RMIDLTGCDGVMV 225
>gi|167520832|ref|XP_001744755.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777086|gb|EDQ90704.1| predicted protein [Monosiga brevicollis MX1]
Length = 267
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 112/210 (53%), Gaps = 2/210 (0%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG+ R LAP+V S+L +R + G ++PM+ A + + L + P +
Sbjct: 27 LGAKRVFLAPLVGGSDLAFRTMCYERGVVAAFSPMLYARHAVENPNYLNLNLDTQPAEN- 85
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
+I+QFC N+ A C G+D+N+ A+RG YG YL + L ++V +
Sbjct: 86 VIVQFCANNGDFFARAIDKVRLRCRGVDLNLSWTSKRAERGGYGEYLLKNPTQLESVVRA 145
Query: 266 LRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
A QVP++CK+R+ V +T+ A+ LE G LL + GRT Q G+A+WE I
Sbjct: 146 -GVATQVPITCKLRLQASVAETIATAQRLEAWGVSLLTIEGRTSAQLDSRRGIANWEDIA 204
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTG 355
+R A+ IP++ NG++ +EACLA TG
Sbjct: 205 QIRAAVGIPILYNGDLVVREQIEACLAYTG 234
>gi|373501507|ref|ZP_09591858.1| hypothetical protein HMPREF9140_01976 [Prevotella micans F0438]
gi|371948160|gb|EHO66047.1| hypothetical protein HMPREF9140_01976 [Prevotella micans F0438]
Length = 324
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 134/262 (51%), Gaps = 11/262 (4%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
G LAPM D +++ +R + +R+G+ + YT VSA I + + + ++ PE+RP
Sbjct: 8 FGERPLFLAPMEDVTDIGFRRMCKRFGAAMVYTEFVSADAVIRNIQSTLKKIIIDPEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D ++ EAAK+ E D ID+N GCP + +A +G GA + ++ PLL +
Sbjct: 68 VGIQIYGRDVNSMVEAAKIVEQAEPDVIDLNFGCPVKKIASKGA-GAGMLNNIPLLLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV+ PV+ K R+ D N + + A LE G Q L +HGRT Q M TG A W
Sbjct: 127 REVVRAVRTPVTVKTRLGWDSNSLIIDQLAEQLEDCGIQALTIHGRTRSQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPA 379
I V+ +TIP+I NG++ Q GV +M P +F P
Sbjct: 185 TLIGEVKNNPRITIPIIGNGDVTSPQTAHERFEQYGVDAIMIGRATFGCPWIFRSPNEPD 244
Query: 380 WELASEYLDLVAQYPVRLQYAR 401
+ E +D++ + +R+ R
Sbjct: 245 LTI-DEKIDVLKEM-LRINVER 264
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
G LAPM D +++ +R + +R+G+ + YT VSA I + + + ++ PE+R
Sbjct: 7 NFGERPLFLAPMEDVTDIGFRRMCKRFGAAMVYTEFVSADAVIRNIQSTLKKIIIDPEER 66
Query: 135 PLIIQRTIFPRLGSPRFILAPMVDASE 161
P+ IQ I+ R + A +V+ +E
Sbjct: 67 PVGIQ--IYGRDVNSMVEAAKIVEQAE 91
>gi|291561472|emb|CBL40271.1| tRNA-U20-dihydrouridine synthase [butyrate-producing bacterium
SS3/4]
Length = 319
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 121/224 (54%), Gaps = 5/224 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM +++P+R+L R G+ L MVSA + K QE+L +RP+ +Q
Sbjct: 15 ILAPMAGVTDMPYRILCREQGAGLVCMEMVSAKAILYKNKNTQELLKVDERERPVSLQLF 74
Query: 212 GNDSKNLTE-AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G+D + + AA L + D DIN+GCP + G+ L + L+ +++ L +AV
Sbjct: 75 GSDPDIVADIAASLEDGPYDIFDINMGCPVPKIVKNGEGSALMRNPKLVEEILTKLVKAV 134
Query: 271 QVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+ PV+ K R D VE A++ E AG +AVHGRT +Q +G A W I V+
Sbjct: 135 KKPVTVKFRKGFDDTCINAVEIAKIAESAGVAAVAVHGRTREQ--YYSGKADWNIIREVK 192
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
KA+ IPVI NG++ D + + +TG G+M A G NP +F
Sbjct: 193 KAVKIPVIGNGDVFTPQDAKRLVEETGCDGIMVARGAKGNPWIF 236
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 102/233 (43%), Gaps = 32/233 (13%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
ILAPM +++P+R+L R G+ L MVSA + K QE+L +RP+ +Q
Sbjct: 15 ILAPMAGVTDMPYRILCREQGAGLVCMEMVSAKAILYKNKNTQELLKVDERERPVSLQ-- 72
Query: 142 IFPRLGSPRFILAPMVDASE-LPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQEI 196
GS I+A + + E P+ + G C P + + + KL +EI
Sbjct: 73 ---LFGSDPDIVADIAASLEDGPYDIFDINMG---CPVPKIVKNGEGSALMRNPKLVEEI 126
Query: 197 LMSTPE--DRPLIIQF-CGNDSK--NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAY 251
L + +P+ ++F G D N E AK+AE + + +Y
Sbjct: 127 LTKLVKAVKKPVTVKFRKGFDDTCINAVEIAKIAESA----GVAAVAVHGRTREQYYSG- 181
Query: 252 LQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
+ DW N++ +++AV++PV DV + R++E GC + V
Sbjct: 182 -KADW----NIIREVKKAVKIPVIGN----GDVFTPQDAKRLVEETGCDGIMV 225
>gi|227873295|ref|ZP_03991560.1| dihydrouridine synthase [Oribacterium sinus F0268]
gi|227840862|gb|EEJ51227.1| dihydrouridine synthase [Oribacterium sinus F0268]
Length = 344
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 117/224 (52%), Gaps = 4/224 (1%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
++APM ++LP+R+L + G L +T MVSA + +L+ E + Q
Sbjct: 41 ILMAPMAGVTDLPYRILCKEMGLSLSFTEMVSAKAIYYGNQNTDSLLVHKGEPGLVSAQL 100
Query: 211 CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G+D + E A E DGID+N+GCP R G+ L + PL ++S++ +A+
Sbjct: 101 FGSDPALMAEMACRIEEDFDGIDVNMGCPVPKVVRNQEGSALMTNLPLAEQVLSTMAKAL 160
Query: 271 QVPVSCKIRI--YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+ P++ K RI D VE+A+M E +G + +HGRT +Q G A+W++I +
Sbjct: 161 KKPLTVKFRIGFTDDAINVVEFAKMAEASGVASVTIHGRTREQ--YYRGKANWQYIKEAK 218
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
+A+ IPV NG+I D A L TGV GV A G NP L
Sbjct: 219 EAVKIPVFGNGDIFQEEDALAMLLSTGVDGVALARGIQGNPFLI 262
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 93/212 (43%), Gaps = 27/212 (12%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
++APM ++LP+R+L + G L +T MVSA + +L+ E P ++
Sbjct: 41 ILMAPMAGVTDLPYRILCKEMGLSLSFTEMVSAKAIYYGNQNTDSLLVHKGE--PGLVSA 98
Query: 141 TIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQ----FIADKKLRQEI 196
+F GS ++A M E + + G C P V +Q + + L +++
Sbjct: 99 QLF---GSDPALMAEMACRIEEDFDGIDVNMG---CPVPKVVRNQEGSALMTNLPLAEQV 152
Query: 197 L--MSTPEDRPLIIQF---CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAY 251
L M+ +PL ++F +D+ N+ E AK+AE G + RG
Sbjct: 153 LSTMAKALKKPLTVKFRIGFTDDAINVVEFAKMAEASGVASVTIHGRTREQYYRG----- 207
Query: 252 LQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD 283
+ +W + ++AV++PV I+Q+
Sbjct: 208 -KANW----QYIKEAKEAVKIPVFGNGDIFQE 234
>gi|358063266|ref|ZP_09149885.1| hypothetical protein HMPREF9473_01947 [Clostridium hathewayi
WAL-18680]
gi|356698532|gb|EHI60073.1| hypothetical protein HMPREF9473_01947 [Clostridium hathewayi
WAL-18680]
Length = 319
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/303 (33%), Positives = 150/303 (49%), Gaps = 23/303 (7%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
ILAPM ++LP+RLL + G L T MVSA K +L E+RP+ +Q
Sbjct: 14 LILAPMAGVTDLPFRLLCKEQGCGLMCTEMVSAKAIYYKNKNTAPLLEVREEERPIAVQL 73
Query: 211 CGNDSKNLTEAAKLAE--PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G+D ++E AK E P+ D IDIN+GCP G+ L + L+ +++++ +
Sbjct: 74 FGSDPVIMSEMAKQIEDGPY-DIIDINMGCPVPKVVNNGEGSALMKNPKLVEEILTAMVK 132
Query: 269 AVQVPVSCKIRIYQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
A++ PV+ K R D VN VE A++ E G +AVHGRT +Q +G A WE I
Sbjct: 133 ALKKPVTVKFRRGFDETCVN-AVEIAKIAESCGVAAVAVHGRTREQ--YYSGKADWEIIR 189
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQT- 376
V++A+ IPVI NG+I D + L +TG G+M A G NP +F TG+
Sbjct: 190 QVKEAVKIPVIGNGDIFTPQDAKRMLEETGCDGLMIARGAKGNPWIFREINHYLDTGELL 249
Query: 377 -RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHL----LTLPENSDVRLLVGKTNHIK 431
RP E E L A V + + M H+ LP +S +R V + +
Sbjct: 250 PRPGREEIREMLLRHASLQVEYKGEYLGIREMRKHVAWYTAGLPHSSALRNEVNQVESYE 309
Query: 432 DLR 434
D +
Sbjct: 310 DFK 312
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 102/236 (43%), Gaps = 36/236 (15%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
ILAPM ++LP+RLL + G L T MVSA K +L E+RP+ +Q
Sbjct: 14 LILAPMAGVTDLPFRLLCKEQGCGLMCTEMVSAKAIYYKNKNTAPLLEVREEERPIAVQ- 72
Query: 141 TIFPRLGSPRFILAPMVDASE-LPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQE 195
GS I++ M E P+ ++ G C P V + + KL +E
Sbjct: 73 ----LFGSDPVIMSEMAKQIEDGPYDIIDINMG---CPVPKVVNNGEGSALMKNPKLVEE 125
Query: 196 IL--MSTPEDRPLIIQF-CGNDSK--NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGA 250
IL M +P+ ++F G D N E AK+AE C + + + +Y
Sbjct: 126 ILTAMVKALKKPVTVKFRRGFDETCVNAVEIAKIAE-SCGVAAVAV---HGRTREQYYSG 181
Query: 251 YLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY--QDVNKTVEYARMLERAGCQLLAV 304
+ DW ++ +++AV++PV I+ QD RMLE GC L +
Sbjct: 182 --KADW----EIIRQVKEAVKIPVIGNGDIFTPQDAK------RMLEETGCDGLMI 225
>gi|227821859|ref|YP_002825829.1| tRNA-dihydrouridine synthase [Sinorhizobium fredii NGR234]
gi|227340858|gb|ACP25076.1| tRNA-dihydrouridine synthase [Sinorhizobium fredii NGR234]
Length = 342
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 142/269 (52%), Gaps = 17/269 (6%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R LAPM ++LP+R+L+ R+G+ T MV++ + + + L ++ D P I+Q
Sbjct: 27 RVALAPMSGVTDLPFRMLAWRFGAGFVVTEMVASRELVGNAAESWARLKNSGID-PHIVQ 85
Query: 210 FCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G ++ + EAAK+ E + D +DIN+GCP G+ G+ L D +L+ + +
Sbjct: 86 LAGREAHWMAEAAKIVEANGADIVDINMGCPAKKVTGGYSGSALMRDPDHALSLIEATVK 145
Query: 269 AVQVPVSCKIRIYQDVNKTVE--YARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV+VPV+ K+R+ D N AR E AG Q + +HGRT Q G A W+ I A
Sbjct: 146 AVRVPVTLKMRLGWDENSINAPLIARRAEEAGVQAITIHGRTRMQ--FYNGNADWDAIRA 203
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVM---TAEGNLYNPALFTGQTR--PAWE 381
VR ++IP+IANG++ +AD L ++G VM + +G ++ G A E
Sbjct: 204 VRDVISIPLIANGDVDTIADAMEILRRSGADAVMLGRSCQGRPWHAGALAGAADEPAATE 263
Query: 382 LASEYLDLVAQY------PVRLQYARGHV 404
+A+ +++ A + L++AR HV
Sbjct: 264 IAAIFVEHYAMMLDFYGPEIGLRHARKHV 292
>gi|224537320|ref|ZP_03677859.1| hypothetical protein BACCELL_02198 [Bacteroides cellulosilyticus
DSM 14838]
gi|224521051|gb|EEF90156.1| hypothetical protein BACCELL_02198 [Bacteroides cellulosilyticus
DSM 14838]
Length = 329
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 136/272 (50%), Gaps = 12/272 (4%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D ++ +RL+ +++G+ + YT VSA I ++ L + E+RP
Sbjct: 8 LGERPIFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSADALIRSVSKTEQKLNISDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D++ + EAA++ E D +DIN GCP + VA +G LQ + P + +
Sbjct: 68 VAIQIYGKDTETMVEAARIVEEARPDILDINFGCPVKRVAGKGAGAGMLQ-NIPKMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
++ AV++PV+ K R+ D N VE A L+ G L +HGRT Q M TG A W
Sbjct: 127 RAVVDAVKIPVTVKTRLGWDANNKIIVELAEQLQDCGIAALTIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPA 379
I V+K + IP+I NG+I + C GV +M + P +F + R
Sbjct: 185 TLIGEVKKNPRMHIPIIGNGDITSPQRAKECFDLYGVDAIMIGRASFGRPWIFK-EVRHY 243
Query: 380 WELASEYLDLVAQYPVRLQYARGHVFNMCHHL 411
E E L A++ +L R V + + L
Sbjct: 244 LETGEELPPLSAEW--KLSVLRQEVVDSVNLL 273
Score = 45.1 bits (105), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
LG LAPM D ++ +RL+ +++G+ + YT VSA I ++ L + E+R
Sbjct: 7 DLGERPIFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSADALIRSVSKTEQKLNISDEER 66
Query: 135 PLIIQ 139
P+ IQ
Sbjct: 67 PVAIQ 71
>gi|350273063|ref|YP_004884376.1| putative TIM-barrel protein, nifR3 family [Rickettsia japonica YH]
gi|348592276|dbj|BAK96237.1| putative TIM-barrel protein, nifR3 family [Rickettsia japonica YH]
Length = 339
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/329 (30%), Positives = 159/329 (48%), Gaps = 33/329 (10%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK--LRQEILMSTPEDRP 205
S ILAPM ++L +R L +R+G+ L + MV++ I + + L++ +M E
Sbjct: 18 SSNIILAPMSGVTDLEFRRLVKRFGAGLVVSEMVASRAMIVESRQSLKKSAIMRDDETSA 77
Query: 206 LIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
+ Q G + + EAAK+ E ID+N GCP G+ G+ L D L +
Sbjct: 78 CV-QLAGCEPNVIAEAAKMNEGMGAKIIDLNFGCPAKKVVGGYSGSALMRDEQLAAKIFE 136
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVE--YARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
+ +AV++PV+ K+RI D N A++ E +G Q++ VHGRT Q +G A W+
Sbjct: 137 ATVEAVKLPVTVKMRIGWDDNTKNAPTLAKIAESSGVQMITVHGRTRCQ--FYSGNADWD 194
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TG 374
I +V++++ IPVIANG+I A + L ++G G+M G P L TG
Sbjct: 195 FIRSVKESVKIPVIANGDITNFAKAKEALQKSGADGIMVGRGAYGKPWLISQIDHYLKTG 254
Query: 375 QTRPAWELASEYLDLVAQ-YPVRLQY---------ARGHVFNMCHHLLTLPENSDVRLLV 424
+ + A +A E LD+V + Y L Y AR H+ + LP +++ R
Sbjct: 255 EAKSAPSIA-EQLDIVTEHYEAILDYYGESVGVPIARKHI---GWYSSGLPNSAEFR--- 307
Query: 425 GKTNHIKDLRKAVDMLRERFIDYHEGRKL 453
G N + D + + E + E KL
Sbjct: 308 GAVNLMNDPLAVKEKIAEFYTSVMETNKL 336
>gi|223982705|ref|ZP_03632935.1| hypothetical protein HOLDEFILI_00209 [Holdemania filiformis DSM
12042]
gi|223965301|gb|EEF69583.1| hypothetical protein HOLDEFILI_00209 [Holdemania filiformis DSM
12042]
Length = 333
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 152/314 (48%), Gaps = 25/314 (7%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
++APM S +R ++ +G+ L YT M+S K E+ P++ P+ +Q
Sbjct: 14 VIAPMAGISNAAFRTIAHEFGAGLIYTEMISDKAICYSNKKTMEMTQLAPDEHPIAMQLF 73
Query: 212 GNDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G++ ++ +AA+ L + CD IDIN+GCP G+ + D LV + V
Sbjct: 74 GHEEASMIQAAQVLDKTDCDVIDINMGCPVPKVVNSGSGSAMMKDPEATYQLVRKIVAVV 133
Query: 271 QVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+ PV+ KIR+ D + +E AR LE AG LAVHGRT Q + G A W I V+
Sbjct: 134 EKPVTAKIRLGWDSSSINVLEMARGLEAAGVSALAVHGRTRSQ--LYEGKADWSWIKKVK 191
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL-------FTGQTRP--- 378
+A++IPVI NG+++ + D A + +T V VM G L NP L F+G+
Sbjct: 192 EAVSIPVIGNGDLRSVEDAMARIQETQVDAVMIGRGVLGNPWLIRDLVCAFSGEGSAEPV 251
Query: 379 ----AWELASEY---LDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIK 431
+E+A E+ L + + ++ RGH C ++ +P ++ ++ + +
Sbjct: 252 SDHEKFEIALEHARRLCTLKSERIGMKEMRGHA---CWYIQGIPYSNRMKDRINQMTTYA 308
Query: 432 DLRKAVDMLRERFI 445
+ + + E I
Sbjct: 309 EFETMLKLYEEALI 322
>gi|357517083|ref|XP_003628830.1| tRNA-dihydrouridine synthase 2-like protein [Medicago truncatula]
gi|355522852|gb|AET03306.1| tRNA-dihydrouridine synthase 2-like protein [Medicago truncatula]
Length = 322
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 136/272 (50%), Gaps = 38/272 (13%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP---------- 201
ILAPMV LP RLL+ YG+ + Y + H+ I ++ E L ST
Sbjct: 8 ILAPMVRVGTLPLRLLAAEYGADITYGEEIVDHKIIKCERRINEHLGSTDFVEKGTESVV 67
Query: 202 ------EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 255
E ++ Q +++ AA+L +DIN+GCP+ + G GA L
Sbjct: 68 FRTCDQEKNRVVFQIGTSNAVRALTAAQLVCNDVAAVDINMGCPKAFSLSGGMGAALLSK 127
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
L+++++++LR+ + +PV+CKIR+ + + TVE AR +E+ G +AVHGR V R +
Sbjct: 128 PELISDILTTLRRNLSLPVTCKIRLLKSPHDTVELARRIEKTGVDAIAVHGRYVLDRPRD 187
Query: 316 TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG----------------- 358
A W I V AL+IPVIANG++ D + + TG+ G
Sbjct: 188 P--AKWNGIADVVSALSIPVIANGDVFEYDDFQRIKSATGMFGHIPRLSLPNKRLGSSRA 245
Query: 359 --VMTAEGNLYNPALFTGQTRPAWELA-SEYL 387
VM A G L+NP++F+ + ++E+ EY+
Sbjct: 246 SSVMAARGALWNPSIFSPEGEVSYEVTQKEYI 277
>gi|282880523|ref|ZP_06289230.1| TIM-barrel protein, nifR3 family [Prevotella timonensis CRIS 5C-B1]
gi|281305626|gb|EFA97679.1| TIM-barrel protein, nifR3 family [Prevotella timonensis CRIS 5C-B1]
Length = 327
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 122/233 (52%), Gaps = 9/233 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D +++ +RLL +R+G + YT VSA + K L E+RP
Sbjct: 8 LGKYPLFLAPMEDVTDIGFRLLCKRFGVSMVYTEFVSAEALVRSIKSTVNKLTICEEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D ++ EAA++ A+ D ID+N GCP + VA +G GA + + PL+ +
Sbjct: 68 VGIQIYGRDVASMVEAAQIVAQSKPDVIDLNFGCPVKKVAGKGA-GAGMLQNIPLMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV +PV+ K R+ D + + E A L+ G Q L +HGRT Q M TG A W
Sbjct: 127 REVVKAVHIPVTVKTRLGWDASHLIITELAEQLQDCGIQALTIHGRTRSQ--MYTGKADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
I V+K + IP+I NG+I + + GV GVM + P +F
Sbjct: 185 TLIGEVKKNPRIHIPIIGNGDITSAEEAKHAFETYGVDGVMVGRASFGCPWIF 237
Score = 47.8 bits (112), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LG LAPM D +++ +RLL +R+G + YT VSA + K L E+RP
Sbjct: 8 LGKYPLFLAPMEDVTDIGFRLLCKRFGVSMVYTEFVSAEALVRSIKSTVNKLTICEEERP 67
Query: 136 LIIQRTIFPRLGSPRFILAPMVDASEL 162
+ IQ I+ R +A MV+A+++
Sbjct: 68 VGIQ--IYGR------DVASMVEAAQI 86
>gi|373453751|ref|ZP_09545638.1| nifR3 family putative TIM-barrel protein [Eubacterium sp. 3_1_31]
gi|371963042|gb|EHO80614.1| nifR3 family putative TIM-barrel protein [Eubacterium sp. 3_1_31]
Length = 338
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 128/245 (52%), Gaps = 10/245 (4%)
Query: 132 EDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK 191
+D+ I+ P + ++APM S +R++ +++G+ L YT MVS + +
Sbjct: 2 QDKSWKIRDITIPN----QVVIAPMAGISNPAFRVICKQFGAGLIYTEMVSDKALYYENE 57
Query: 192 LRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYG 249
+ E+ PL +Q G+D + + AAKL + CD IDIN+GCP + + G
Sbjct: 58 KTLHMTAVEKEEHPLTMQIFGHDIETMVYAAKLLDEKSDCDIIDINMGCPVNKIIKSNAG 117
Query: 250 AYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGR 307
+ L D + ++ +V+ PV+ K+RI D++ VE A+ L G LAVHGR
Sbjct: 118 SALMKDIDHAVTMTKAVVDSVKKPVTVKMRIGWDMDSINCVELAKGLASVGVSALAVHGR 177
Query: 308 TVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367
T Q M G A W++I AV++A++IPV+ NG+I+ D + L TG +M G L
Sbjct: 178 TRKQ--MYEGKADWQYIKAVKQAVSIPVMGNGDIRSSEDAKWMLDTTGCDAIMVGRGVLG 235
Query: 368 NPALF 372
+P L
Sbjct: 236 DPWLI 240
>gi|423226122|ref|ZP_17212588.1| tRNA dihydrouridine synthase A [Bacteroides cellulosilyticus
CL02T12C19]
gi|392630551|gb|EIY24542.1| tRNA dihydrouridine synthase A [Bacteroides cellulosilyticus
CL02T12C19]
Length = 329
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 136/272 (50%), Gaps = 12/272 (4%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D ++ +RL+ +++G+ + YT VSA I ++ L + E+RP
Sbjct: 8 LGERPIFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSADALIRSVSKTEQKLNISDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D++ + EAA++ E D +DIN GCP + VA +G LQ + P + +
Sbjct: 68 VAIQIYGKDTETMVEAARIVEEARPDILDINFGCPVKRVAGKGAGAGMLQ-NIPKMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
++ AV++PV+ K R+ D N VE A L+ G L +HGRT Q M TG A W
Sbjct: 127 RAVVDAVKIPVTVKTRLGWDANNKIIVELAEQLQDCGIAALTIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPA 379
I V+K + IP+I NG+I + C GV +M + P +F + R
Sbjct: 185 TLIGEVKKNPRMHIPIIGNGDITSPQRAKECFDLYGVDAIMIGRASFGRPWIFK-EVRHY 243
Query: 380 WELASEYLDLVAQYPVRLQYARGHVFNMCHHL 411
E E L A++ +L R V + + L
Sbjct: 244 LEAGEELPPLSAEW--KLSVLRQEVVDSINLL 273
Score = 45.1 bits (105), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
LG LAPM D ++ +RL+ +++G+ + YT VSA I ++ L + E+R
Sbjct: 7 DLGERPIFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSADALIRSVSKTEQKLNISDEER 66
Query: 135 PLIIQ 139
P+ IQ
Sbjct: 67 PVAIQ 71
>gi|323343751|ref|ZP_08083978.1| tRNA-dihydrouridine synthase B [Prevotella oralis ATCC 33269]
gi|323095570|gb|EFZ38144.1| tRNA-dihydrouridine synthase B [Prevotella oralis ATCC 33269]
Length = 346
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 121/233 (51%), Gaps = 9/233 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
G+ LAPM D +++ +RLL +R+G+ + YT +SA + K L + E+RP
Sbjct: 28 FGNHPLFLAPMEDVTDIGFRLLCKRFGAAMVYTEFISAEALVRSIKATMSKLTISDEERP 87
Query: 206 LIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D ++ EAAK+ E H D ID+N GCP + VA +G GA + + PLL +
Sbjct: 88 VGIQIYGRDVVSMVEAAKIVEEAHPDVIDLNFGCPVKKVASKG-AGAGMLRNIPLLLEIT 146
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV PV+ K R+ D N + + A L+ G L +HGRT Q M TG A W
Sbjct: 147 REVVKAVHTPVTVKTRLGWDANNLIIADLAEQLQDCGIHALTIHGRTRSQ--MYTGKADW 204
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
I V++ + IP+I NG+I ++ + + G VM P +F
Sbjct: 205 TLIGEVKRNPRIHIPIIGNGDIASPSEAKEAFDRYGTDAVMIGRATFGRPWIF 257
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 63 CHSSTARSDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKL 122
C+ + + G+ LAPM D +++ +RLL +R+G+ + YT +SA + K
Sbjct: 15 CNFANNMKIGNIEFGNHPLFLAPMEDVTDIGFRLLCKRFGAAMVYTEFISAEALVRSIKA 74
Query: 123 RQEILMSTPEDRPLIIQ 139
L + E+RP+ IQ
Sbjct: 75 TMSKLTISDEERPVGIQ 91
>gi|383649565|ref|ZP_09959971.1| dihydrouridine synthase TIM-barrel protein nifR3 [Sphingomonas
elodea ATCC 31461]
Length = 332
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 150/317 (47%), Gaps = 23/317 (7%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
R+ +P +LAPM ++LP+R RR+GS L T M+++ I + + + P +
Sbjct: 13 RVEAP-VLLAPMTGVTDLPFRRAVRRFGSGLNVTEMIASAAAIRETRQSVQKAAWDPIEE 71
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
P+ +Q G + EAAKL E I DIN+GCP G G+ L D ++
Sbjct: 72 PVSMQLVGCTPHEMAEAAKLNEDRGAAIIDINMGCPVRKVTNGDAGSALMRDLDHAGAII 131
Query: 264 SSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ AVQ PV+ K+R+ D + + A++ + G +L+ VHGRT +Q M G A W
Sbjct: 132 RACVDAVQAPVTVKMRMGWDHDSLNAPDLAKIAQDLGAKLVTVHGRTRNQ--MYRGSADW 189
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP--------ALFT 373
+ V+ A++IPVI NG+I +AD LAQ+G GVM G P AL
Sbjct: 190 SFVRRVKDAVSIPVIVNGDICSVADAREALAQSGADGVMIGRGAYGKPWILRQVMDALTG 249
Query: 374 GQTRPAWELASEYLDLVAQYPVRLQYARGHV-FNMCHHLL-----TLPENSDVRLLVGKT 427
RP + +Y + Y L + V NM L L +++ R K
Sbjct: 250 KGDRPEPTIEEQYRVITEHYIETLAHYGNEVGVNMMRKHLGWYTKGLHGSAEFR---NKV 306
Query: 428 NHIKDLRKAVDMLRERF 444
N + D K +DML E +
Sbjct: 307 NQVVDPVKVLDMLAEFY 323
>gi|304383997|ref|ZP_07366453.1| tRNA-dihydrouridine synthase B [Prevotella marshii DSM 16973]
gi|304334889|gb|EFM01163.1| tRNA-dihydrouridine synthase B [Prevotella marshii DSM 16973]
Length = 326
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 118/233 (50%), Gaps = 9/233 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LGS +LAPM D +++ +RLL +RYG+ + YT VSA + + L E+RP
Sbjct: 8 LGSRPLLLAPMEDVTDIGFRLLCKRYGASMVYTEFVSAEALVRSIRSTMSKLTICDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D + EAA++ E D ID+N GCP + VA +G GA + + PL+ +
Sbjct: 68 VGIQIYGRDKDAMVEAARIVERAKPDVIDLNFGCPVKKVAGKGA-GAGMLRNVPLMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV PV+ K R+ D + + A L+ G Q L +HGRT Q M TG A W
Sbjct: 127 REVVKAVNTPVTVKTRLGWDAENIIIEDLAEQLQDCGIQALTIHGRTRSQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
I V+ L IPVI NG+I + Q GV VM P +F
Sbjct: 185 SWIGKVKANPRLHIPVIGNGDIASPEQAKEAFEQYGVDAVMIGRATFGRPWIF 237
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LGS +LAPM D +++ +RLL +RYG+ + YT VSA + + L E+RP
Sbjct: 8 LGSRPLLLAPMEDVTDIGFRLLCKRYGASMVYTEFVSAEALVRSIRSTMSKLTICDEERP 67
Query: 136 LIIQ 139
+ IQ
Sbjct: 68 VGIQ 71
>gi|83311464|ref|YP_421728.1| NifR3-like protein [Magnetospirillum magneticum AMB-1]
gi|82946305|dbj|BAE51169.1| NifR3-like protein [Magnetospirillum magneticum AMB-1]
Length = 305
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 153/297 (51%), Gaps = 26/297 (8%)
Query: 162 LPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEA 221
+P R L +R G+ L + M+++ I + ++ T E+ P+ +Q G + K + EA
Sbjct: 1 MPNRRLVKRLGAGLVVSEMIASQAMIRQNRQTMQMAQHTAEEFPMSVQLAGCEPKVMAEA 60
Query: 222 AKLAEPHCDGI-DINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR 279
AKL + I DIN+GCP + VA +G G+ L + L +++++ +AV +PV+ K+R
Sbjct: 61 AKLNQDLGAAIIDINMGCPVKKVALKGEAGSALMRNENLAARILTAVVKAVDIPVTLKMR 120
Query: 280 IYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA 337
D+N AR+ E G +++ VHGRT +Q M TG A W I V++A++IPVI
Sbjct: 121 TGWDMNSRNAPSLARVAEECGIRMVTVHGRTRNQ--MYTGQADWAFIGEVKRAVSIPVIG 178
Query: 338 NGNIQCLADVEACLAQTGVAGVMTAEGNLYNP--------ALFTGQTRP------AWELA 383
NG+++ + D L +G GVM G P L TG+ P ++
Sbjct: 179 NGDVESIDDAVRMLELSGADGVMIGRGTYGRPWLPGQVAHYLATGERLPDPSRAEQLQIM 238
Query: 384 SEYLD-LVAQYPVR--LQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAV 437
E+LD +++ Y ++ AR H M + LP +++ R V +TN LR A+
Sbjct: 239 LEHLDAMLSHYGSEPGVRIARKH---MAWYSKGLPGSAEFRAEVNRTNDPDQLRLAI 292
>gi|398378695|ref|ZP_10536851.1| putative TIM-barrel protein, nifR3 family [Rhizobium sp. AP16]
gi|397724347|gb|EJK84818.1| putative TIM-barrel protein, nifR3 family [Rhizobium sp. AP16]
Length = 342
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 139/268 (51%), Gaps = 16/268 (5%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R ILAPM ++LP+R L+ RYG+ L T MV++ + + D L S +P ++Q
Sbjct: 28 RVILAPMSGVTDLPFRQLALRYGAGLVVTEMVASRELVQDTAESWARLKSAGL-KPHMVQ 86
Query: 210 FCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G ++ + EAAK+A + D IDIN+GCP G+ G+ L D L+ + +
Sbjct: 87 LAGREAHWMAEAAKIAADNGADIIDINMGCPAKKVIGGYSGSALMRDPDHALGLIEATVK 146
Query: 269 AVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV VPV+ K+R+ D N AR E AG QL+ +HGRT Q G A W+ I A
Sbjct: 147 AVDVPVTLKMRLGWDENSINAPHIARRAEEAGIQLVTIHGRTRMQ--FYEGRADWDAIRA 204
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA---EGNLYNPALFTGQTRP----A 379
VR ++IP++ANG++ D L ++G VM +G ++ + G P
Sbjct: 205 VRDVISIPLVANGDVDTPEDASEILRRSGADAVMVGRGCQGRPWHAGVLAGHREPDRGEI 264
Query: 380 WELASEYLDLVAQY---PVRLQYARGHV 404
++A E+ ++ + V +++AR H+
Sbjct: 265 ADIALEHYRMMLDFYGEAVGIRHARKHL 292
Score = 42.0 bits (97), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD 119
R ILAPM ++LP+R L+ RYG+ L T MV++ + + D
Sbjct: 28 RVILAPMSGVTDLPFRQLALRYGAGLVVTEMVASRELVQD 67
>gi|162448213|ref|YP_001621345.1| tRNA-dihydrouridine synthase [Acholeplasma laidlawii PG-8A]
gi|161986320|gb|ABX81969.1| tRNA-dihydrouridine synthase [Acholeplasma laidlawii PG-8A]
Length = 336
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 121/228 (53%), Gaps = 7/228 (3%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ ILAPM S P+RL++R+ G+ + + MVS ++L T E++P Q
Sbjct: 13 KLILAPMAGVSNHPFRLMARQLGAGVVFAEMVSDKAIFFQNPKTLQMLYMTVEEKPAAQQ 72
Query: 210 FCGNDSKNLTEAAKLAE--PHCDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSL 266
G+D + + EAA + +CD IDIN+GCP VA GA L D + ++V ++
Sbjct: 73 IFGSDLETMVEAAMFIDKNSNCDFIDINMGCPVPKVAIGAQAGASLMKDPQKIYDIVKAI 132
Query: 267 RQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
++ V PV+ KIR D VE A+M+E+AG L+ VH RT Q +G + I
Sbjct: 133 KEKVSKPVTVKIRSGWDSESVNAVEVAKMIEKAGASLITVHARTRAQG--YSGEPDLDVI 190
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
AV++A++IPVI NGNI + L TG VM +L NP +F
Sbjct: 191 KAVKEAVSIPVIGNGNIVDGKSAKHMLEYTGCDAVMIGRASLGNPWIF 238
>gi|347968562|ref|XP_003436246.1| AGAP002791-PB [Anopheles gambiae str. PEST]
gi|347968564|ref|XP_003436247.1| AGAP002791-PC [Anopheles gambiae str. PEST]
gi|333467946|gb|EGK96765.1| AGAP002791-PB [Anopheles gambiae str. PEST]
gi|333467947|gb|EGK96766.1| AGAP002791-PC [Anopheles gambiae str. PEST]
Length = 362
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 131/262 (50%), Gaps = 11/262 (4%)
Query: 180 MVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCP 239
M+ A F +K R + ED PLI QF N++ + A+++ P+ DG+D+N GCP
Sbjct: 1 MIMADSFCKSEKARLNEFTTNEEDTPLIAQFAANNTIDFLSASEMVYPYVDGVDLNCGCP 60
Query: 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQ--DVNKTVEYARMLE 295
Q A YG+ L L+ +++ ++R+ + VS K+R+ D +T++ R LE
Sbjct: 61 QRWAMAEGYGSALLKTPELIADMLGTVRRNMPSTFSVSVKVRLLSSTDHKRTIDMCRQLE 120
Query: 296 RAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTG 355
G L VHGRT + M + + +++++ IP++ANG+I L D E QT
Sbjct: 121 ATGITFLTVHGRTAPE--MTKVPVHKDALQEIKQSIGIPMVANGDIFTLDDAEQMYLQTK 178
Query: 356 VAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLP 415
GVMTA G L NPALF G + E +L++ Q + Y H HH +
Sbjct: 179 CDGVMTARGILSNPALFAGHSSTPVECVKRWLNICQQADTDITYQCMH-----HHFSFMT 233
Query: 416 ENSDVRLLVGKTNHIKDLRKAV 437
E+ + L + N++ ++ V
Sbjct: 234 ESLLTKRLRYELNNLSKEKQKV 255
>gi|193214513|ref|YP_001995712.1| nifR3 family TIM-barrel protein [Chloroherpeton thalassium ATCC
35110]
gi|193087990|gb|ACF13265.1| TIM-barrel protein, nifR3 family [Chloroherpeton thalassium ATCC
35110]
Length = 402
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 121/226 (53%), Gaps = 9/226 (3%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM D ++ +R L + YG+ + +T +S+ I + L ++RP+ IQ
Sbjct: 57 ILAPMEDVTDPSFRRLCKHYGADIVFTEFISSDGLIRHAVKSKRKLDVFDDERPVAIQIF 116
Query: 212 GNDSKNLTEAAKLAEPHC-DGIDINIGCP-QMVAKRGHYGAYL-QDDWPLLTNLVSSLRQ 268
GN + + EAA++AE D IDIN GCP + VA +G L Q D L+ + ++ +
Sbjct: 117 GNQIEPMVEAAQMAEAAGPDFIDINYGCPAKKVAGKGAGSGLLCQPD--LMEKITDAVVK 174
Query: 269 AVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV++PV+ K RI D ++ R LE G Q L++HGRT Q M G A W I
Sbjct: 175 AVRLPVTAKTRIGWDERSISILDTVRRLEGCGIQALSIHGRTRAQ--MYKGRADWSWIAR 232
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
++ TIP+I NG+I D + +TGV GVM G + NP LF
Sbjct: 233 AKEVATIPIIGNGDIWTAEDAKRMFDETGVDGVMIGRGAIGNPFLF 278
>gi|109128993|ref|XP_001097732.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Macaca mulatta]
Length = 492
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 146/294 (49%), Gaps = 26/294 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS----TPEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + I K++ E+L + P+DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRV 72
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q +D++ A+L E GID+N+GCP+ + +G GA L+
Sbjct: 73 VFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGG-GACLKT 131
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
++S+L + ++ PV+CKIRI + T+ + +ER G +AVHGR ++R
Sbjct: 132 LPQKKKKILSTLVKGIRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQ 191
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ S E I A+ L+IPVIANG IQ +D+E T + VM A ++NP+
Sbjct: 192 HP--VSCEVIKAIADTLSIPVIANGGSHDHIQRYSDIEDFRQATAASSVMVARAAMWNPS 249
Query: 371 LFTGQT-RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+F + RP E+ +Y+ QY + + +C L E+ RLL
Sbjct: 250 IFLKEGLRPLEEVMQKYIRYAVQYD---NHYTNTKYCLCQMLREQLESPQGRLL 300
>gi|395508373|ref|XP_003758487.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like
[Sarcophilus harrisii]
Length = 491
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/264 (30%), Positives = 135/264 (51%), Gaps = 22/264 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL----MSTPEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + + K++ E+L P +R
Sbjct: 13 KVILAPMVRVGTLPMRLLALDYGADIVYCEELIDIKMLQCKRVVNEVLDTIDFVAPNERV 72
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q D++ A+L E GIDIN+GCP+ + +G GA L
Sbjct: 73 VFRTCEREQNKVVFQMGSADAERALAVARLVENDVAGIDINMGCPKEYSTKGGMGAALLS 132
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + ++S+L + + PV+CKIRI + +T+ + +ER G +AVHGR ++R
Sbjct: 133 DPDKIEKILSTLVKGICKPVTCKIRILPSLEETLNLVKRIERTGVAAIAVHGRKKEERPQ 192
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ + I A+ +A++IPVIANG I+ +D+EA T + VM A ++NP+
Sbjct: 193 HP--VHCDIIKAIAEAVSIPVIANGGSHDHIKVYSDLEAFRQMTSASSVMVARAAMWNPS 250
Query: 371 LFTGQT-RPAWELASEYLDLVAQY 393
+F + +P + EY+ +Y
Sbjct: 251 IFRKEGLQPLERIMQEYIKYAVRY 274
>gi|253744195|gb|EET00435.1| tRNA dihydrouridine synthase, putative [Giardia intestinalis ATCC
50581]
Length = 459
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 124/255 (48%), Gaps = 20/255 (7%)
Query: 143 FPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK----LRQEILM 198
+ +LGSP +APMVD SELP+RLL+RRYG L +TPM + + + K L E+
Sbjct: 11 YVQLGSPSKGIAPMVDGSELPYRLLTRRYGVELAWTPMYNTNNLVTSSKAMNQLVAELKY 70
Query: 199 STPEDRPLIIQFCGNDSKNLTEA----AKLAEPHC-DGIDINIGCPQMVAKRGHYGAYLQ 253
DRPL++Q GN+ N A ++ HC D +++N+GCPQ VA RG YGAYL
Sbjct: 71 GGSIDRPLVLQLSGNNPSNFEIAYNTLIQMGAGHCFDVVELNMGCPQAVALRGKYGAYLM 130
Query: 254 DDWPLLTNLVSSLRQAVQVP-----VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308
L ++ L + V+ K R+ V TV L G +L +HGRT
Sbjct: 131 GHLSLAEEILKILVAVTTLSGLGHKVAVKTRLDTSVADTVAMCLRLCSTGVAMLTLHGRT 190
Query: 309 VDQR-GMNTGLASWEHITAVRKAL-----TIPVIANGNIQCLADVEACLAQTGVAGVMTA 362
QR G G W+ + +V K L + ANG + + E TG G M+A
Sbjct: 191 KVQRTGSAVGPPDWQALASVFKDLRAAYPQMVFFANGGVWNIETHERLCTFTGCHGTMSA 250
Query: 363 EGNLYNPALFTGQTR 377
N ++T + R
Sbjct: 251 SMLTENAGVYTCRDR 265
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK----LRQEILM 128
+ QLGSP +APMVD SELP+RLL+RRYG L +TPM + + + K L E+
Sbjct: 11 YVQLGSPSKGIAPMVDGSELPYRLLTRRYGVELAWTPMYNTNNLVTSSKAMNQLVAELKY 70
Query: 129 STPEDRPLIIQ 139
DRPL++Q
Sbjct: 71 GGSIDRPLVLQ 81
>gi|405381108|ref|ZP_11034940.1| putative TIM-barrel protein, nifR3 family [Rhizobium sp. CF142]
gi|397322430|gb|EJJ26836.1| putative TIM-barrel protein, nifR3 family [Rhizobium sp. CF142]
Length = 339
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 140/268 (52%), Gaps = 16/268 (5%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R +LAPM +++P+R L+ R+G+ L T MV++ + + D L + RP ++Q
Sbjct: 28 RVVLAPMSGVTDMPFRELAWRHGAGLVVTEMVASRELVNDTAESWARLRAAGF-RPHMVQ 86
Query: 210 FCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G ++ + EA+K+A H D IDIN+GCP G+ G+ L D L+ + +
Sbjct: 87 LAGREAHWMAEASKIAADHGADIIDINMGCPAKKVIGGYSGSALMRDPDHALELIEATVK 146
Query: 269 AVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV +PV+ K+R+ D N A+ E G QL+ +HGRT Q G A W+ I
Sbjct: 147 AVDIPVTLKMRLGWDENSINAPHIAKRAEETGIQLITIHGRTRMQ--FYEGRADWDAIRP 204
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP---ALFTGQTRPAWE-- 381
VR +++P+IANG+++ D + L ++G VM G+ P + G PA E
Sbjct: 205 VRDVISVPLIANGDVETAEDAQEILRRSGADAVMIGRGSQGRPWHAGVLAGAREPAREEI 264
Query: 382 --LASEYLDLVAQY---PVRLQYARGHV 404
+A E+ ++ ++ V +++AR H+
Sbjct: 265 AAIAVEHYRMMLEFYGEAVAVRHARKHL 292
>gi|300727518|ref|ZP_07060909.1| TIM-barrel protein, NifR3 family [Prevotella bryantii B14]
gi|299775221|gb|EFI71822.1| TIM-barrel protein, NifR3 family [Prevotella bryantii B14]
Length = 333
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 123/234 (52%), Gaps = 9/234 (3%)
Query: 145 RLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 204
+ G LAPM D +++ +R L +RYG+ + YT VSA I K ++ ++R
Sbjct: 7 KFGERPVFLAPMEDVTDIGFRKLCKRYGAAMMYTEFVSADAIIRSIKSTLNKMIIDDDER 66
Query: 205 PLIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNL 262
P+ IQ G + +++ EAAK+ E H D IDIN GCP + VA +G GA L + PL+ ++
Sbjct: 67 PVGIQIYGKEVESMVEAAKIVEQFHPDVIDINFGCPVKKVAGKGA-GAGLLRNIPLMLDI 125
Query: 263 VSSLRQAVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320
+ +AV VPV+ K R+ D + V + A L+ G Q L +HGRT Q M TG A
Sbjct: 126 AKHVVEAVNVPVTAKTRLGWDQDNLVITDLAEQLQDCGIQALTIHGRTRSQ--MYTGEAD 183
Query: 321 WEHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
W I V+K + IP+I NG+I + + GV VM P +F
Sbjct: 184 WSLIGEVKKNPRIHIPIIGNGDITTPEECKRAFDDFGVDAVMVGRATFGRPWIF 237
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 75 QLGSPRF-----ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
++G+ +F LAPM D +++ +R L +RYG+ + YT VSA I K ++
Sbjct: 2 EIGNIKFGERPVFLAPMEDVTDIGFRKLCKRYGAAMMYTEFVSADAIIRSIKSTLNKMII 61
Query: 130 TPEDRPLIIQ 139
++RP+ IQ
Sbjct: 62 DDDERPVGIQ 71
>gi|218131619|ref|ZP_03460423.1| hypothetical protein BACEGG_03239 [Bacteroides eggerthii DSM 20697]
gi|217985922|gb|EEC52261.1| TIM-barrel protein, nifR3 family [Bacteroides eggerthii DSM 20697]
Length = 327
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 145/288 (50%), Gaps = 23/288 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG +LAPM D ++ +RL+ + +G+ + YT VS+ I ++ L + E+RP
Sbjct: 8 LGKYPVLLAPMEDVTDPAFRLMCKNFGADMVYTEFVSSDALIRSVSKTEQKLKISDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D+ + EAA++ E H D +DIN GCP + VA +G LQ + P + +
Sbjct: 68 VAIQIYGKDTDTMVEAARIVEQAHPDILDINFGCPVKRVAGKGAGAGMLQ-NIPKMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
S+ AV++PV+ K R+ D + V+ A L+ G L +HGRT Q M TG A W
Sbjct: 127 RSVVDAVKIPVTVKTRLGWDASNKIIVDLAEQLQDCGIAALTIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I VR + IP+I NG+I + C + GV +M + P +F
Sbjct: 185 TLIGEVRNNPRMHIPIIGNGDITTPQRAKECFDRYGVDAIMIGRASFGRPWIFKEVKHYL 244
Query: 373 -TGQTRPAWELASEY-LDLVAQY---PVRLQYARGHVFNMCHHLLTLP 415
TG+ P L+SE+ L+++ Q V+L R + ++ HL P
Sbjct: 245 ETGEEMPP--LSSEWKLNVLRQEVEDSVKLLDERRGILHVRRHLAASP 290
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LG +LAPM D ++ +RL+ + +G+ + YT VS+ I ++ L + E+RP
Sbjct: 8 LGKYPVLLAPMEDVTDPAFRLMCKNFGADMVYTEFVSSDALIRSVSKTEQKLKISDEERP 67
Query: 136 LIIQ 139
+ IQ
Sbjct: 68 VAIQ 71
>gi|295098775|emb|CBK87864.1| tRNA-U20-dihydrouridine synthase [Eubacterium cylindroides T2-87]
Length = 326
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 146/311 (46%), Gaps = 20/311 (6%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
++AP+ S + +R++++ +G+ L MVS D K + P + P+ Q
Sbjct: 14 VIAPLAGISNIAFRVIAKEFGAGLVCNEMVSDKALYYDSKKTFSMCDVDPNEHPVSFQLF 73
Query: 212 GNDSKNLTEAAKL--AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G+D + AAK + +CD ID N+GCP + G+YL D LVS + +
Sbjct: 74 GHDIDTVVYAAKYLDTQTNCDIIDFNMGCPVNKVIKAKAGSYLMKDIDYAKELVSHIVEN 133
Query: 270 VQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
V PV+ K+RI D + VE A+ +E G + +AVHGRT Q M G A W +I V
Sbjct: 134 VNKPVTVKMRIGFDKDHINCVEMAKAMEGVGVKAVAVHGRTRSQ--MYEGKADWSYIKQV 191
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYL 387
++A++IPVI NG+++ + D +TG VM G + NP L + + A
Sbjct: 192 KEAVSIPVIGNGDVRSVDDFFRMQKETGCDAVMIGRGIIGNPFLIQ-ECKDALYNEHHTY 250
Query: 388 DLVAQYPVRLQYARGHVFNMCH-------------HLLTLPENSDVRLLVGKTNHIKDLR 434
D + + L++A G + N +L LP + + K N + DL+
Sbjct: 251 DFNDRIEICLKHANGLIKNKGEVIAIKEMRGLASWYLKGLPGSHYFKNECSKINTLDDLK 310
Query: 435 KAVDMLRERFI 445
++ + ++
Sbjct: 311 NVLNEYKTEYM 321
>gi|205371966|ref|ZP_03224784.1| YacF [Bacillus coahuilensis m4-4]
Length = 332
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 150/315 (47%), Gaps = 26/315 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R ILAPM +RL + +G+ L MVS + +L + PL +Q
Sbjct: 12 RVILAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKGIVLQNAKTMNMLYIDEREYPLSLQ 71
Query: 210 FCGNDSKNLTEAAKLAEPHCDG--IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G + + L EAAK + H + IDIN+GCP + GA D + +V+++
Sbjct: 72 IFGGEKETLVEAAKFVDKHSNAAIIDINMGCPVPKITKCDAGAKWLLDPNKIYEMVAAVV 131
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV PV+ K+R+ D + VE ARM+ERAG Q +++HGRT Q M G A+W+ I
Sbjct: 132 DAVDKPVTVKMRMGWDEDHIYAVENARMIERAGGQAVSLHGRTRVQ--MYEGEANWDIIR 189
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP--------ALFTGQ-- 375
V++++ IPVI NG++Q D + L +TG GVM L NP L TGQ
Sbjct: 190 EVKQSVGIPVIGNGDVQTPQDAKRMLDETGADGVMIGRAALGNPWMIYRTVKYLETGQLI 249
Query: 376 TRPAWELASEYLDLVAQYPVRLQYARGH---VFNMCHH----LLTLPENSDVRLLVGKTN 428
P A E +D+ + RL +G V M H L + N R V ++N
Sbjct: 250 DEPG---AREKIDVCKLHLDRLINLKGEHVAVREMRKHAAWYLKGIRGNGKFRNAVNESN 306
Query: 429 HIKDLRKAVDMLRER 443
DL +D L E+
Sbjct: 307 TRHDLVAVLDGLVEQ 321
>gi|399037112|ref|ZP_10734022.1| putative TIM-barrel protein, nifR3 family, partial [Rhizobium sp.
CF122]
gi|398065399|gb|EJL57037.1| putative TIM-barrel protein, nifR3 family, partial [Rhizobium sp.
CF122]
Length = 234
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 120/218 (55%), Gaps = 6/218 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R +LAPM +++P+R L+ R+G+ L T MV++ + + + + + P ++Q
Sbjct: 6 RVVLAPMSGVTDMPFRQLAWRHGAGLVVTEMVASRELV-NSTAESWARLESAGFEPHMVQ 64
Query: 210 FCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G ++ + EAAK+A H D IDIN+GCP G+ G+ L D L+ + +
Sbjct: 65 LAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGYSGSALMRDPDHALGLIEATVK 124
Query: 269 AVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV +PV+ K+R+ D N E AR E AG QL+ +HGRT Q G A W+ I A
Sbjct: 125 AVTIPVTLKMRLGWDENSINAPEIARRAEDAGVQLITIHGRTRMQ--FYEGRADWDAIRA 182
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364
VR A+T+P++ANG+++ + D L ++G VM G
Sbjct: 183 VRDAITVPLVANGDVETVEDAYEILRRSGADAVMIGRG 220
>gi|222085889|ref|YP_002544420.1| tRNA-dihydrouridine synthase [Agrobacterium radiobacter K84]
gi|221723337|gb|ACM26493.1| tRNA-dihydrouridine synthase protein [Agrobacterium radiobacter
K84]
Length = 342
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 139/268 (51%), Gaps = 16/268 (5%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R ILAPM ++LP+R L+ RYG+ L T MV++ + + D L S +P ++Q
Sbjct: 28 RVILAPMSGVTDLPFRQLALRYGAGLVVTEMVASRELVQDTAESWARLKSAGL-KPHMVQ 86
Query: 210 FCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G ++ + EAAK+A + D IDIN+GCP G+ G+ L D L+ + +
Sbjct: 87 LAGREAYWMAEAAKIAADNGADIIDINMGCPAKKVIGGYSGSALMRDPDHALGLIEATVK 146
Query: 269 AVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV VPV+ K+R+ D N AR E AG QL+ +HGRT Q G A W+ I A
Sbjct: 147 AVDVPVTLKMRLGWDENSINAPHIARRAEEAGIQLVTIHGRTRMQ--FYEGRADWDAIRA 204
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA---EGNLYNPALFTGQTRP----A 379
VR ++IP++ANG++ D L ++G VM +G ++ + G P
Sbjct: 205 VRDVISIPLVANGDVDTPEDASEILRRSGADAVMVGRGCQGRPWHAGVLAGHREPDRGEI 264
Query: 380 WELASEYLDLVAQY---PVRLQYARGHV 404
++A E+ ++ + V +++AR H+
Sbjct: 265 ADIALEHYRMMLDFYGEAVGIRHARKHL 292
Score = 42.0 bits (97), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD 119
R ILAPM ++LP+R L+ RYG+ L T MV++ + + D
Sbjct: 28 RVILAPMSGVTDLPFRQLALRYGAGLVVTEMVASRELVQD 67
>gi|144899194|emb|CAM76058.1| Dihydrouridine synthase, DuS [Magnetospirillum gryphiswaldense
MSR-1]
Length = 335
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 7/229 (3%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM +++P R L +R G+ L + M+++ I + ++ + E+ P+ +Q
Sbjct: 21 ILAPMSGVTDMPCRRLVKRMGAGLVVSEMIASQAMIRANRQTMKMASNCAEEHPMSVQLA 80
Query: 212 GNDSKNLTEAAKL-AEPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G + + + EAA++ A+ IDIN+GCP + VA +G G+ L D L L+ + +A
Sbjct: 81 GCEPEVMAEAARMNADRGAAIIDINMGCPVKKVAVKGEAGSALMKDEILAGQLMEATVRA 140
Query: 270 VQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
V VPV+ K R+ D N+ AR+ + +G +++ +HGRT Q TG A W+ + V
Sbjct: 141 VDVPVTLKCRMGWDHNRLNAPRLARIAQESGIKMVTIHGRTRQQ--FYTGTADWKFVRQV 198
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT 376
+ A+ IPVI NG+I+ + D LA++G GVM G+ P F GQ
Sbjct: 199 KDAVDIPVIVNGDIETIDDAIRALAESGADGVMIGRGSYGRP-WFPGQV 246
>gi|417401854|gb|JAA47792.1| Putative trna-dihydrouridine synthase [Desmodus rotundus]
Length = 493
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 134/264 (50%), Gaps = 22/264 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST----PEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + + K++ E+L + P+DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPDDRV 72
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q +D++ A+L E GID+N+GCP+ + +G GA L
Sbjct: 73 VFRTCKREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLS 132
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + ++S+L + PV+CKIRI + T+ + +E G +AVHGR ++R
Sbjct: 133 DPDKIEKILSTLVKGTCRPVTCKIRILPSLEDTLSLVKRIESTGIAAIAVHGRKREERPQ 192
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ S E I A+ + L+IPVIANG I+ D+E T + VM A ++NP+
Sbjct: 193 HP--VSCETIKAIAETLSIPVIANGGSHDHIKDYLDIEDFRQATAASSVMVARAAMWNPS 250
Query: 371 LFTGQT-RPAWELASEYLDLVAQY 393
+F + +P E+ +Y+ QY
Sbjct: 251 IFLKEGLQPLEEVMQKYIRYAVQY 274
>gi|427431612|ref|ZP_18920955.1| tRNA dihydrouridine synthase B [Caenispirillum salinarum AK4]
gi|425877760|gb|EKV26491.1| tRNA dihydrouridine synthase B [Caenispirillum salinarum AK4]
Length = 336
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 141/267 (52%), Gaps = 19/267 (7%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP--EDRPLIIQ 209
+LAPM ++ P+R L +R+G+ L ++ M+++ Q I + + MST ++ P+ +Q
Sbjct: 20 LLAPMSGVTDQPFRRLVKRFGAGLVFSEMIASAQMI--RAHADTLRMSTACGDEHPMAVQ 77
Query: 210 FCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
GN+ + + EAA++ + IDIN+GCP +G+ G+ L D L +++++R+
Sbjct: 78 LAGNEPEVMAEAARMNVDRGAALIDINMGCPVKKVVKGYAGSALMRDEALAGRIMAAVRK 137
Query: 269 AVQ--VPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
AV VPV+ K+R+ D + AR+ + G ++ VHGRT +Q M G A W I
Sbjct: 138 AVDPAVPVTVKMRLGWDHDCLNAPRLARIAQEEGLAMVTVHGRTRNQ--MYKGSADWGAI 195
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP--------ALFTGQT 376
A +A++IPVI NG+++ L D + +G AGVM G P L TGQ
Sbjct: 196 RATVEAVSIPVIGNGDVESLDDAAGLMTASGAAGVMIGRGCQGRPWFLGQVAHFLATGQR 255
Query: 377 RPAWELASEYLDLVAQYPVRLQYARGH 403
RP LA + L+ L + G+
Sbjct: 256 RPDPPLAEQRAVLLEHLDALLDHYGGY 282
>gi|326435349|gb|EGD80919.1| DUS4L protein [Salpingoeca sp. ATCC 50818]
Length = 558
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 113/204 (55%), Gaps = 3/204 (1%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
I APMV S+L +R + RR+G + +TPM+ + F+ + R+ ++ +D P++ QF
Sbjct: 27 ICAPMVRYSQLAFRHVVRRHGVDVAFTPMIVSDSFVQSWRAREADFATSTQDEPVVAQFA 86
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
++++ AA L P+ D ID+N GCPQ A + G++L L+ ++V R
Sbjct: 87 AANARDFAHAAALMAPYADAIDLNCGCPQKWAMQDGLGSHLVSKPELVADMVKQARALSG 146
Query: 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL 331
+PVS KIR+ +TVE R E+ G ++VHGR+ +R ++ I AV+ A+
Sbjct: 147 IPVSIKIRLRNTTAETVELCRRAEQMGAAWISVHGRSPKERRCPV---HYDEIAAVKAAM 203
Query: 332 TIPVIANGNIQCLADVEACLAQTG 355
+PV+ANG+ L D + +TG
Sbjct: 204 NVPVVANGDAFSLDDARMIVDKTG 227
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 15/113 (13%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
I APMV S+L +R + RR+G + +TPM+ + F+ + R+ ++ +D P++ Q
Sbjct: 27 ICAPMVRYSQLAFRHVVRRHGVDVAFTPMIVSDSFVQSWRAREADFATSTQDEPVVAQ-- 84
Query: 142 IFPRLGSPRF-----ILAPMVDASEL------PWRLLSRRYGSHLCYTPMVSA 183
F + F ++AP DA +L W + GSHL P + A
Sbjct: 85 -FAAANARDFAHAAALMAPYADAIDLNCGCPQKW-AMQDGLGSHLVSKPELVA 135
>gi|320103323|ref|YP_004178914.1| tRNA-U20-dihydrouridine synthase [Isosphaera pallida ATCC 43644]
gi|319750605|gb|ADV62365.1| tRNA-U20-dihydrouridine synthase [Isosphaera pallida ATCC 43644]
Length = 393
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 95/270 (35%), Positives = 138/270 (51%), Gaps = 16/270 (5%)
Query: 150 RFILAPMVDASELPWRLLSR-RYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
RF LAPM + L +RL R R G L T +V+ + +++ E+ + P DRP+ +
Sbjct: 59 RFFLAPMAGFTSLAFRLSVRERGGLGLVTTDLVNCRSLLENRQRALELTETDPADRPVAM 118
Query: 209 QFCGNDSKNLTEAA-KLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
Q G+ + +T AA +L E +DIN+GCP + G+ L + LV +
Sbjct: 119 QLYGSKIEEMTAAAARLVERGATLVDINMGCPVRKVVKTGGGSALMCEVDNAARLVEEMV 178
Query: 268 QAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+AV+VPV+ K R+ D + + AR E+AG L VHGRT Q G G + E I
Sbjct: 179 KAVEVPVTIKTRLGWDEHTLSAPDLARAFEQAGAAALVVHGRTRAQ-GFK-GPVNREGIR 236
Query: 326 AVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQT 376
AV +A+ T+PV+ NG+I+ + D E +TG A V G L NP +F TG+
Sbjct: 237 AVVEAVKTMPVVGNGDIRTIHDAETMFRETGCAAVSLGRGALANPFIFRHLDHWARTGEA 296
Query: 377 RPAWELASEYLDLVAQYPVRLQYARGHVFN 406
P E A E +DLV ++ RL RG F
Sbjct: 297 GPEPEFA-ERVDLVRRHFRRLVALRGERFG 325
>gi|152990938|ref|YP_001356660.1| tRNA-dihydrouridine synthase [Nitratiruptor sp. SB155-2]
gi|151422799|dbj|BAF70303.1| tRNA-dihydrouridine synthase [Nitratiruptor sp. SB155-2]
Length = 308
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/231 (32%), Positives = 124/231 (53%), Gaps = 7/231 (3%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
P ++LAP+ ++LP+R + +++G+ L + M+S++ + D K ++L +PE+ P
Sbjct: 5 FSKPLYVLAPLAGYTDLPFRSVVKKFGADLTISEMISSNALVYDSKKTYKMLEKSPEENP 64
Query: 206 LIIQFCGNDSKNLTEAA-KLAE-PHCDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNL 262
+Q G D + EA +L E DGID+N GCP V K+G G+ L DD L +
Sbjct: 65 YFVQIAGGDPLIVKEAVERLNEIEGIDGIDLNCGCPVPKVVKQGA-GSALLDDLDRLGKI 123
Query: 263 VSSLRQAVQVP-VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
V ++++ + S KIR+ N+ VE ++LE AG + +HGRT + G +
Sbjct: 124 VQTIKETSEKNYTSVKIRLGFTENRVVEIVKVLEEAGADFITIHGRT--RSGGFKAPVDY 181
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
E I +++++IPVIANG+I + L T GVM G + P +F
Sbjct: 182 EAIARAKESVSIPVIANGDITNFQKTQEVLFITKADGVMIGRGAIGKPWIF 232
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 39/64 (60%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
P ++LAP+ ++LP+R + +++G+ L + M+S++ + D K ++L +PE+ P
Sbjct: 5 FSKPLYVLAPLAGYTDLPFRSVVKKFGADLTISEMISSNALVYDSKKTYKMLEKSPEENP 64
Query: 136 LIIQ 139
+Q
Sbjct: 65 YFVQ 68
>gi|383754725|ref|YP_005433628.1| putative tRNA-dihydrouridine synthase [Selenomonas ruminantium
subsp. lactilytica TAM6421]
gi|381366777|dbj|BAL83605.1| putative tRNA-dihydrouridine synthase [Selenomonas ruminantium
subsp. lactilytica TAM6421]
Length = 323
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 134/264 (50%), Gaps = 21/264 (7%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLI 207
+P F LAPM ++ +R+++ G LCY MVS + +L S P +RPL
Sbjct: 12 APVF-LAPMAGVTDTAYRIIAHDMGCPLCYAEMVSCQGIHYRNERTLTMLESEPGERPLA 70
Query: 208 IQFCGNDSKNLTEAAKLAEP--HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
+Q N EAAK E D +D N+GCP + G+ L + ++S+
Sbjct: 71 MQLFANSPDMAAEAAKYVEELGTADILDFNMGCPAPKIVKNGEGSALMLAPDKVYEILSA 130
Query: 266 LRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+R+AV++PV+ K+R D + +E AR+ E AG +AVHGRT +Q +G A W
Sbjct: 131 IRKAVKMPVTVKMRKGWDDDHVNVLEIARIAEAAGVDAIAVHGRTREQ--FYSGNADWNI 188
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQ 375
I V+KA+ +PVIANG+++ D++ L TG GVM G NP +F TG+
Sbjct: 189 IAEVKKAVKVPVIANGDVRTCQDLKKILEVTGADGVMIGRGAQGNPWIFKRLTHYLRTGE 248
Query: 376 TRPA------WELASEYLDLVAQY 393
P E+ +LDL+ +Y
Sbjct: 249 ILPQPSMQERAEVIVRHLDLLLKY 272
>gi|115314770|ref|YP_763493.1| tRNA-dihydrouridine synthase [Francisella tularensis subsp.
holarctica OSU18]
gi|115129669|gb|ABI82856.1| probable tRNA-dihydrouridine synthase [Francisella tularensis
subsp. holarctica OSU18]
Length = 327
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 161/317 (50%), Gaps = 25/317 (7%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM + +R + + YG+ + Y MVS + E+L ++PL IQ
Sbjct: 15 VLAPMAGFCDSAFRTICKEYGAGMIYMEMVSNKAVVERNWETMEMLYMENSEKPLGIQIF 74
Query: 212 GNDSKNLTEAAK-LAE-PHCDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
D + A K +AE CD +DINIGCP VAK+ GA L D + +++++ +
Sbjct: 75 STDIDSFVGATKYIAENTECDFLDINIGCPMPKVAKKLQAGAALLKDVNRIHEILTAVVK 134
Query: 269 AVQVPVSCKIRI---YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV PV+ K+RI Q++N +E A+ + AG +A+HGRT +Q M TG A+W+ I
Sbjct: 135 AVHKPVTVKMRIGWDEQNIN-AIEVAKACQDAGVSAIAIHGRTREQ--MYTGKANWDIIR 191
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTR 377
VRKA+ VI NG++ C +A + TGV VM + NP +F TG+
Sbjct: 192 DVRKAVDTVVIGNGDVFCPHSAKAMMEHTGVDAVMVGRASRGNPWIFRQIAEYLNTGELI 251
Query: 378 PAWELASEYLDLVAQY---PVRLQYARGHVFNMCHH----LLTLPENSDVRLLVGKTNHI 430
P E +D++ ++ ++L+ A+ V + H L LP + + R+ + + H
Sbjct: 252 PP-PTPVERVDVLEEHLRRLIKLKTAKVAVKEIRTHASFYLQDLPNSKEFRMKLNQLEHE 310
Query: 431 KDLRKAVDMLRERFIDY 447
+++ K ++ ++ +
Sbjct: 311 QEIFKVLEEYKKSLYKF 327
>gi|363900435|ref|ZP_09326940.1| hypothetical protein HMPREF9625_01600 [Oribacterium sp. ACB1]
gi|395209173|ref|ZP_10398338.1| TIM-barrel protein, nifR3 family [Oribacterium sp. ACB8]
gi|361956309|gb|EHL09627.1| hypothetical protein HMPREF9625_01600 [Oribacterium sp. ACB1]
gi|394705774|gb|EJF13300.1| TIM-barrel protein, nifR3 family [Oribacterium sp. ACB8]
Length = 373
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/240 (33%), Positives = 124/240 (51%), Gaps = 8/240 (3%)
Query: 135 PLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ 194
P+ I + + P ++APM ++LP+R+L + G L T MVSA + K
Sbjct: 58 PVRIGKLVLP----GNILMAPMAGVTDLPYRILCKEMGVSLSCTEMVSAKAILYGNKNTD 113
Query: 195 EILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
+L E +Q G+D + + E AK EP D IDIN+GCP R G+ L +
Sbjct: 114 SLLEKGEEPGFRAVQLFGSDPEIMAEMAKRVEPDFDIIDINMGCPVPKVVRNQEGSALME 173
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRI-YQDVNKTV-EYARMLERAGCQLLAVHGRTVDQR 312
+ PL+ ++S++ +AV PV+ K R+ + D + V ++ ++ E AG + VHGRT +Q
Sbjct: 174 NLPLVEKILSAMVKAVDKPVTVKCRLGFTDSHINVLDFVKVAEGAGVSAIVVHGRTREQ- 232
Query: 313 GMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
G A+W+ I ++A+ IP+ NG+I D A L TGV G+ G NP L
Sbjct: 233 -YYRGKANWDWIRKAKEAVQIPLFGNGDIFTEEDAMAMLLSTGVDGISLGRGVQGNPFLI 291
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 87/212 (41%), Gaps = 27/212 (12%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
++APM ++LP+R+L + G L T MVSA + K +L E +Q
Sbjct: 70 ILMAPMAGVTDLPYRILCKEMGVSLSCTEMVSAKAILYGNKNTDSLLEKGEEPGFRAVQ- 128
Query: 141 TIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQ----FIADKKLRQEI 196
GS I+A M E + ++ G C P V +Q + + L ++I
Sbjct: 129 ----LFGSDPEIMAEMAKRVEPDFDIIDINMG---CPVPKVVRNQEGSALMENLPLVEKI 181
Query: 197 L--MSTPEDRPLIIQ--FCGNDSK-NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAY 251
L M D+P+ ++ DS N+ + K+AE G ++ + +Y
Sbjct: 182 LSAMVKAVDKPVTVKCRLGFTDSHINVLDFVKVAE----GAGVSAIVVHGRTREQYYRGK 237
Query: 252 LQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD 283
DW + ++AVQ+P+ I+ +
Sbjct: 238 ANWDW------IRKAKEAVQIPLFGNGDIFTE 263
>gi|399056034|ref|ZP_10743586.1| putative TIM-barrel protein, nifR3 family [Brevibacillus sp. CF112]
gi|433547028|ref|ZP_20503311.1| tRNA-dihydrouridine synthase [Brevibacillus agri BAB-2500]
gi|398046459|gb|EJL39068.1| putative TIM-barrel protein, nifR3 family [Brevibacillus sp. CF112]
gi|432181671|gb|ELK39289.1| tRNA-dihydrouridine synthase [Brevibacillus agri BAB-2500]
Length = 342
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 107/317 (33%), Positives = 151/317 (47%), Gaps = 27/317 (8%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
+LAPM +RL+++ +G+ L MVS + K ++L ++PL +Q
Sbjct: 12 VVLAPMAGVCNPAFRLIAKEFGTGLVCAEMVSDKGIVHGNKKTIDMLYVDEREKPLSLQI 71
Query: 211 CGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G D + L EAAK + H D IDIN+GCP GA L D + +VS++
Sbjct: 72 FGGDKETLVEAAKYVDQHTNADIIDINMGCPVPKITSCDAGARLLLDPNKIYEVVSAVVD 131
Query: 269 AVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV+ PV+ K+R+ D VE A+ +ERAG + +AVHGRT Q M G A W I
Sbjct: 132 AVEKPVTVKMRLGWDEEHLYVVENAKAVERAGGKAIAVHGRTRVQ--MYKGHADWSWIGR 189
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP--------ALFTGQTRP 378
V++A++IPVI NG++ D L TG GVM L NP L TG+ P
Sbjct: 190 VKEAVSIPVIGNGDVATPEDARRMLDTTGCDGVMIGRAALGNPWMLYRTIQYLTTGELVP 249
Query: 379 AWELASEYLDLVAQYPVRLQYARG---HVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRK 435
+ E +D+ + RL +G V M H ++ L G T H K+L
Sbjct: 250 EPSV-REKIDICLLHAERLIALKGPRVGVLEMRKHAAWY-----LKGLRGST-HTKNLVN 302
Query: 436 AVDM---LRERFIDYHE 449
AV+ LR DY E
Sbjct: 303 AVETEEELRRVLTDYVE 319
>gi|453082951|gb|EMF10997.1| FMN-linked oxidoreductase [Mycosphaerella populorum SO2202]
Length = 367
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/342 (27%), Positives = 152/342 (44%), Gaps = 51/342 (14%)
Query: 147 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAH-----QFIADKKLRQEI----- 196
G P + APMV S+LP+R+L R YG+ + +TPM+ A Q D + +
Sbjct: 27 GRPLNVSAPMVRYSKLPFRMLVREYGADVIFTPMMLARESNRSQIARDAEFTTHVWEMGG 86
Query: 197 ---------------------------LMSTPEDRPLII--QFCGNDSKNLTEAAKLAEP 227
+++P++I QF + AA++ P
Sbjct: 87 DDDDGTEGRGRRGVDVIDGDVGGNGDGNDKQAQNKPVVIIAQFAASSPLEFARAAEMIAP 146
Query: 228 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV---PVSCKIRIYQDV 284
DGID+N GCPQ A + G LQD L+ +V + + V VS KIRI++D+
Sbjct: 147 WVDGIDLNCGCPQSWAIQSGIGCALQDSPSLVAEMVRAAKTRVGKWGKSVSVKIRIHEDL 206
Query: 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK--ALTIPVIANGNIQ 342
T + R+++ AG + VHGRT QR ++ +E I +++ + +P+IANG+
Sbjct: 207 EVTRRWLRIVQEAGVDFVTVHGRTRTQR--SSTRPDYEAIRKLKEEGVVKVPLIANGDAF 264
Query: 343 CLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARG 402
LADV TG GVM A G L NPA+F G +++ + P+
Sbjct: 265 SLADVRRIADLTGADGVMAARGILENPAMFAGYEEVPVRCVQDFMYWAIKCPIPFPLVLH 324
Query: 403 HVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERF 444
HV M + + + RL +DL +D + +++
Sbjct: 325 HVSEMTAKMEGMGKKERRRL-----GECRDLVDLIDFVEDKW 361
Score = 42.0 bits (97), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 70 SDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQ 115
S A G P + APMV S+LP+R+L R YG+ + +TPM+ A +
Sbjct: 20 SQAKQNGGRPLNVSAPMVRYSKLPFRMLVREYGADVIFTPMMLARE 65
>gi|423248012|ref|ZP_17229028.1| hypothetical protein HMPREF1066_00038 [Bacteroides fragilis
CL03T00C08]
gi|423252963|ref|ZP_17233894.1| hypothetical protein HMPREF1067_00538 [Bacteroides fragilis
CL03T12C07]
gi|392657490|gb|EIY51123.1| hypothetical protein HMPREF1067_00538 [Bacteroides fragilis
CL03T12C07]
gi|392660886|gb|EIY54484.1| hypothetical protein HMPREF1066_00038 [Bacteroides fragilis
CL03T00C08]
Length = 324
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 155/319 (48%), Gaps = 29/319 (9%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D ++ +RL+ +++G+ + YT VS+ I + L E+RP
Sbjct: 8 LGERPVFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSSDALIRSVNKTTQKLTICDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D++ + AA++ E D +DIN GCP + VA +G LQ + P + +
Sbjct: 68 VAIQIYGKDTEAMVGAARIVEEAQPDILDINFGCPVKKVAGKGAGAGMLQ-NIPKMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
++ AV++PV+ K R+ D + V+ A L+ G LA+HGRT Q M TG A W
Sbjct: 127 RAVVDAVKIPVTVKTRLGWDADHKIIVDLAEQLQDCGIAALAIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I V+ + IP+I NG++ + C + GV +M G++ P +F
Sbjct: 185 TLIGEVKNNPRMHIPIIGNGDVTTATGAKECFERYGVDAIMIGRGSIGRPWIFREVKHYL 244
Query: 373 -TGQTRPAWELASEYLDL----VAQYPVRLQYARGHVFNMCHHLLT------LPENSDVR 421
TG+ P E YLD+ V RL RG + ++ HL +P + R
Sbjct: 245 ETGEELPR-ESFEWYLDVLREEVLNSVARLDERRG-IIHIRRHLAATPLFKGIPNFRETR 302
Query: 422 LLVGKTNHIKDLRKAVDML 440
+ + +T +++L + D L
Sbjct: 303 IAMLRTESVEELFRIFDGL 321
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
LG LAPM D ++ +RL+ +++G+ + YT VS+ I + L E+R
Sbjct: 7 DLGERPVFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSSDALIRSVNKTTQKLTICDEER 66
Query: 135 PLIIQ 139
P+ IQ
Sbjct: 67 PVAIQ 71
>gi|160902971|ref|YP_001568552.1| dihydrouridine synthase DuS [Petrotoga mobilis SJ95]
gi|160360615|gb|ABX32229.1| dihydrouridine synthase DuS [Petrotoga mobilis SJ95]
Length = 301
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 124/222 (55%), Gaps = 5/222 (2%)
Query: 153 LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCG 212
LAPM D ++ P+R + RR+G+ +T M+S I + + +++L ED + +Q G
Sbjct: 8 LAPMADYTDYPFREICRRFGAKFTFTEMISVDSIIRENEKVEKMLPQKGEDN-IGVQLFG 66
Query: 213 NDSKNLTEAAKLAEPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
N++ EAAK + IDIN CP V K+G GA L + LL ++V +L++++
Sbjct: 67 NETTKFIEAAKSIQHLASWIDINAACPVNKVVKKGS-GAALLKNPKLLGDIVFNLKKSID 125
Query: 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL 331
+PV K+R+ D E A +E+AG + VHGRT Q M +G+A+ E + ++ +
Sbjct: 126 LPVGVKVRLGYDQINIEEVAETVEKAGADYIIVHGRTRSQ--MYSGIANREILKKLKAKI 183
Query: 332 TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
TIP+ A+G++ D++ L G V+ A G + NP +FT
Sbjct: 184 TIPLGASGDVFSKKDIDDYLLNYGADFVLVARGAIGNPWIFT 225
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 83 LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPED 133
LAPM D ++ P+R + RR+G+ +T M+S I + + +++L ED
Sbjct: 8 LAPMADYTDYPFREICRRFGAKFTFTEMISVDSIIRENEKVEKMLPQKGED 58
>gi|331703079|ref|YP_004399766.1| hypothetical protein MLC_0590 [Mycoplasma mycoides subsp. capri LC
str. 95010]
gi|328801634|emb|CBW53787.1| Conserved hypothetical protein, probable tRNA dihydrouridine
synthase (NifR3 family) [Mycoplasma mycoides subsp.
capri LC str. 95010]
Length = 324
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 120/228 (52%), Gaps = 7/228 (3%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ + PM S +R++SR++G+ L Y MVS + D K +L + P+ +Q
Sbjct: 11 KVVQGPMAGVSNEAFRIISRQHGASLVYAEMVSVAGMVHDNKKTLNMLNVNEIEHPMSMQ 70
Query: 210 FCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSL 266
GND +A + E + CD ID+N+GCP VA R G+ L L+ +V ++
Sbjct: 71 IFGNDVDEFIKATQWIEKNVDCDIIDLNLGCPAPKVAIRSQSGSALLKTPDLIYEIVKNV 130
Query: 267 RQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
+ PV+ KIR+ D N VE A+++E+AG +AVH RT + TG A+WE I
Sbjct: 131 VKNTTKPVTAKIRLGWDKNSVNAVEVAKLIEKAGASAIAVHART--RNDFYTGHANWEKI 188
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
V++A++IPVI NG++ + L +TG VM + NP +F
Sbjct: 189 KEVKQAVSIPVIGNGDVIDAKSAKKMLDETGCDAVMVSRACQGNPWIF 236
>gi|428209266|ref|YP_007093619.1| nifR3 family TIM-barrel protein [Chroococcidiopsis thermalis PCC
7203]
gi|428011187|gb|AFY89750.1| TIM-barrel protein, nifR3 family [Chroococcidiopsis thermalis PCC
7203]
Length = 342
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 126/228 (55%), Gaps = 7/228 (3%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYG-SHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 206
+ R + +P+ ++L +R L RRY + YT MV+A K+L +I+ P+++P+
Sbjct: 24 NSRVLQSPLSGVTDLVFRRLVRRYAPESMMYTEMVNATGLHYVKEL-PKIMEVEPQEKPI 82
Query: 207 IIQFCGNDSKNLTEAA-KLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
IQ L EAA K E D +DIN+GCP + G+ L + +V S
Sbjct: 83 SIQLFDCRPDFLAEAAIKAVEEGADTVDINMGCPVNKITKNGGGSSLLRQPEVAEAIVRS 142
Query: 266 LRQAVQVPVSCKIRI-YQDVNKTV-EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ QAV VPV+ K RI + D T+ ++A+ +E AG Q++ VHGRT Q G N G A WE
Sbjct: 143 VVQAVDVPVTVKTRIGWTDKEITILDFAKRMEDAGAQMITVHGRTRAQ-GYN-GAAKWEW 200
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371
I V++ L+IPVI NG+I +A CL QTG GVM + G L P L
Sbjct: 201 IARVKEVLSIPVIGNGDIFSVAAAVKCLEQTGADGVMCSRGTLGYPFL 248
>gi|121535055|ref|ZP_01666872.1| putative TIM-barrel protein, nifR3 family [Thermosinus
carboxydivorans Nor1]
gi|121306305|gb|EAX47230.1| putative TIM-barrel protein, nifR3 family [Thermosinus
carboxydivorans Nor1]
Length = 317
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/299 (31%), Positives = 145/299 (48%), Gaps = 19/299 (6%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM ++LP+RLL++ G L Y+ MVS + + ++ +RP+ IQ
Sbjct: 13 ILAPMAGVTDLPFRLLAKEMGCGLVYSEMVSDKGLLYNNANTLSLIRIDERERPVAIQIF 72
Query: 212 GNDSKNL-TEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G++ +++ A +A D IDIN+GCP + GA L L +++S+ +A
Sbjct: 73 GSEPESMAAAARIVARAGADIIDINMGCPTPKIVKNGEGAALMRRPELAYRIIASVVEAA 132
Query: 271 QVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+VPV+ K+R D + VE AR+ ERAG ++VHGRT +Q G A W I AV+
Sbjct: 133 EVPVTVKMRKGWDESSINAVEIARLAERAGASAVSVHGRTREQ--FYAGQADWSIIRAVK 190
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRPAW 380
+A+TIPV NG+++ D L +TG G+M G NP L TG+ P
Sbjct: 191 EAVTIPVNGNGDVRTPQDAARMLTETGCDGIMIGRGAQGNPWLLRQVAHYLATGEILPGP 250
Query: 381 ELASEY------LDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDL 433
L + LD++ +Y R + + LP +D+R + +D
Sbjct: 251 TLQERFNMLLRHLDMLIEYKGEYIGIREMRSHAAWYTKGLPNAADLRRRFNRAETRQDF 309
Score = 46.2 bits (108), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 99/240 (41%), Gaps = 33/240 (13%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
+L +P ILAPM ++LP+RLL++ G L Y+ MVS + + ++ +R
Sbjct: 7 ELANP-VILAPMAGVTDLPFRLLAKEMGCGLVYSEMVSDKGLLYNNANTLSLIRIDERER 65
Query: 135 PLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMV----SAHQFIADK 190
P+ IQ IF P + A + ++ G C TP + +
Sbjct: 66 PVAIQ--IFG--SEPESMAAAARIVARAGADIIDINMG---CPTPKIVKNGEGAALMRRP 118
Query: 191 KLRQEILMSTPE--DRPLIIQF---CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKR 245
+L I+ S E + P+ ++ S N E A+LAE V R
Sbjct: 119 ELAYRIIASVVEAAEVPVTVKMRKGWDESSINAVEIARLAERAG-------ASAVSVHGR 171
Query: 246 GHYGAYL-QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
Y Q DW +++ ++++AV +PV+ DV + ARML GC + +
Sbjct: 172 TREQFYAGQADW----SIIRAVKEAVTIPVNGN----GDVRTPQDAARMLTETGCDGIMI 223
>gi|323485860|ref|ZP_08091195.1| hypothetical protein HMPREF9474_02946 [Clostridium symbiosum
WAL-14163]
gi|323400848|gb|EGA93211.1| hypothetical protein HMPREF9474_02946 [Clostridium symbiosum
WAL-14163]
Length = 319
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 121/223 (54%), Gaps = 5/223 (2%)
Query: 153 LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCG 212
LAPM ++LP+RLL R G L T MVSA + + + + IL ++RP+ +Q G
Sbjct: 16 LAPMAGVTDLPFRLLCREQGCGLMCTEMVSAKALLYNNRNTKPILAVREQERPVAVQLFG 75
Query: 213 NDSKNLTEAA-KLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
+D +++ A +L E D ID+N+GCP G+ L + L +++S+ + +
Sbjct: 76 SDPDIMSDMALRLEEGPYDIIDVNMGCPVPKIVNNGEGSALMKNPELAEAILTSMVKKLH 135
Query: 272 VPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK 329
PV+ K R D + VE+ARM E G +AVHGRT +Q +G A W+ I V++
Sbjct: 136 KPVTVKFRKGFDDSCVNAVEFARMAESCGVSAVAVHGRTREQ--YYSGKADWDIIRQVKE 193
Query: 330 ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
A+ IPVI NG+I D + + TG GVM A G NP LF
Sbjct: 194 AVKIPVIGNGDIFTPQDAKRMIDLTGCDGVMVARGAKGNPWLF 236
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 106/234 (45%), Gaps = 36/234 (15%)
Query: 83 LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTI 142
LAPM ++LP+RLL R G L T MVSA + + + + IL ++RP+ +Q
Sbjct: 16 LAPMAGVTDLPFRLLCREQGCGLMCTEMVSAKALLYNNRNTKPILAVREQERPVAVQ--- 72
Query: 143 FPRLGSPRFILAPM-VDASELPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQEIL 197
GS I++ M + E P+ ++ G C P + + + +L + IL
Sbjct: 73 --LFGSDPDIMSDMALRLEEGPYDIIDVNMG---CPVPKIVNNGEGSALMKNPELAEAIL 127
Query: 198 MSTPED--RPLIIQF-CGNDSK--NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 252
S + +P+ ++F G D N E A++AE C ++ + +Y
Sbjct: 128 TSMVKKLHKPVTVKFRKGFDDSCVNAVEFARMAE-SC---GVSAVAVHGRTREQYYSG-- 181
Query: 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRIY--QDVNKTVEYARMLERAGCQLLAV 304
+ DW +++ +++AV++PV I+ QD RM++ GC + V
Sbjct: 182 KADW----DIIRQVKEAVKIPVIGNGDIFTPQDAK------RMIDLTGCDGVMV 225
>gi|238917594|ref|YP_002931111.1| hypothetical protein EUBELI_01673 [Eubacterium eligens ATCC 27750]
gi|238872954|gb|ACR72664.1| Hypothetical protein EUBELI_01673 [Eubacterium eligens ATCC 27750]
Length = 321
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 120/223 (53%), Gaps = 5/223 (2%)
Query: 153 LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCG 212
LAPM ++LP+RLL + G L T MVSA + + K ++++ + P +RPL +Q G
Sbjct: 14 LAPMAGVTDLPFRLLCKEQGCGLMCTEMVSAKAVLYNNKNTEDLMKTVPGERPLALQLFG 73
Query: 213 NDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
+D + + AK L+E D ID+N+GCP G+ L D L+ +V + A+
Sbjct: 74 SDPDIMADIAKRLSEREFDIIDVNMGCPVPKVVNNGEGSALMKDPVLVGRIVEKMADALD 133
Query: 272 VPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK 329
P++ KIR D N E A ++E +G +AVH RT Q +G A W+ I V++
Sbjct: 134 KPLTIKIRAGFDENSINAPEIAHVIEESGGAAVAVHARTRQQ--YYSGHADWDIIRQVKE 191
Query: 330 ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
A++IPVI NG+I+ D + QTG G+M NP +F
Sbjct: 192 AVSIPVIGNGDIKSGEDAVNMMKQTGCDGIMIGRAARGNPWIF 234
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 101/232 (43%), Gaps = 32/232 (13%)
Query: 83 LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ--- 139
LAPM ++LP+RLL + G L T MVSA + + K ++++ + P +RPL +Q
Sbjct: 14 LAPMAGVTDLPFRLLCKEQGCGLMCTEMVSAKAVLYNNKNTEDLMKTVPGERPLALQLFG 73
Query: 140 ------RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLR 193
I RL F + + +P ++++ GS L P++ I +K
Sbjct: 74 SDPDIMADIAKRLSEREFDIIDVNMGCPVP-KVVNNGEGSALMKDPVLVGR--IVEK--- 127
Query: 194 QEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL- 252
M+ D+PL I+ +N A ++A I+ + G V R Y
Sbjct: 128 ----MADALDKPLTIKIRAGFDENSINAPEIAHV----IEESGGAAVAVHARTRQQYYSG 179
Query: 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
DW +++ +++AV +PV D+ + M+++ GC + +
Sbjct: 180 HADW----DIIRQVKEAVSIPVIGN----GDIKSGEDAVNMMKQTGCDGIMI 223
>gi|119358060|ref|YP_912704.1| nifR3 family TIM-barrel protein [Chlorobium phaeobacteroides DSM
266]
gi|119355409|gb|ABL66280.1| tRNA-U20-dihydrouridine synthase [Chlorobium phaeobacteroides DSM
266]
Length = 347
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 127/232 (54%), Gaps = 12/232 (5%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQF--IADKKLRQEILMSTPEDRPLIIQ 209
ILAPM D ++ +R L +R+G+ + YT VSA A+K LR+ +L + +RP+ +Q
Sbjct: 13 ILAPMEDVTDRAFRQLCKRFGADIVYTEFVSAEALRRGAEKTLRKLVLEAG--ERPVAVQ 70
Query: 210 FCGNDSKNLTEAAKLAEPHC-DGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G+ +++ EA +AE + D IDIN GCP + VA +G A L++ + + +R
Sbjct: 71 IFGSTVESMVEATAVAEEYAPDFIDINFGCPTKKVAGKGAGAALLREPGKMAAIAEAVVR 130
Query: 268 QAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
++ +PV+ K RI D + ++ R LE AG Q LA+HGRT + M G A W I
Sbjct: 131 RS-SLPVTAKTRIGWDHDSINIIDVLRRLEDAGIQALAIHGRT--RSDMYKGRADWNWIA 187
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
+ IPVIANG+I D A TG G+M G + NP +F GQ +
Sbjct: 188 EAKNHARIPVIANGDIWSAEDALAMFRHTGADGIMIGRGAIGNPFIF-GQAK 238
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQF--IADKKLRQEILMSTPEDRPLIIQ 139
ILAPM D ++ +R L +R+G+ + YT VSA A+K LR+ +L + +RP+ +Q
Sbjct: 13 ILAPMEDVTDRAFRQLCKRFGADIVYTEFVSAEALRRGAEKTLRKLVLEAG--ERPVAVQ 70
>gi|383458880|ref|YP_005372869.1| putative tRNA-dihydrouridine synthase [Corallococcus coralloides
DSM 2259]
gi|380732638|gb|AFE08640.1| putative tRNA-dihydrouridine synthase [Corallococcus coralloides
DSM 2259]
Length = 337
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 126/228 (55%), Gaps = 9/228 (3%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE-DRPLIIQ 209
+ILAPM SE P+R+++ R G+ LC T +VSA + + + L P ++P +Q
Sbjct: 13 YILAPMAGVSERPFRVIAFRLGAALCPTELVSAQGLMRQNQRTLKYLRYDPAVEKPYSLQ 72
Query: 210 FCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G + + + +AA++ + IDIN+GCP R G+ L D P ++V ++R+
Sbjct: 73 IFGGEPEAMAQAAQVGKAAGAQVIDINMGCPVKKVVRNGAGSGLLCDVPRAADIVRAIRE 132
Query: 269 AVQVPVSCKIRIYQDVNKTVEY---ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
A +PV+CKIR D +T+ Y A L+ AGC LA+H RT +Q +G A+W HI
Sbjct: 133 ATGLPVTCKIRSGWDA-RTLNYLKVAEALQEAGCAGLALHPRTREQ--GYSGQANWAHIA 189
Query: 326 AVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
+++ +P++ NG+++ +AD L TG VM G L NP LF
Sbjct: 190 DLKRHFPELPIMGNGDVKTVADAHRMLDSTGCDFVMIGRGALGNPWLF 237
>gi|345881324|ref|ZP_08832846.1| hypothetical protein HMPREF9431_01510 [Prevotella oulorum F0390]
gi|343919989|gb|EGV30729.1| hypothetical protein HMPREF9431_01510 [Prevotella oulorum F0390]
Length = 333
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 102/336 (30%), Positives = 161/336 (47%), Gaps = 34/336 (10%)
Query: 145 RLGSPRF-----ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 199
++GS F LAPM D +++ +R+L +RYG+ + YT VSA I + + +
Sbjct: 2 KIGSLTFGEHPLFLAPMEDVTDIGFRMLCKRYGAAMVYTEFVSADAIIRNIQSTLNKMKI 61
Query: 200 TPEDRPLIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCP-QMVAKRGHYGAYLQDDWP 257
E+RP+ +Q G D ++ EAA++ E H D ID+N GCP + VA +G G+ + + P
Sbjct: 62 NAEERPVGVQIYGRDVDSMVEAARVVEEIHPDVIDLNFGCPVKKVAGKG-AGSGMLKNIP 120
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMN 315
LL + + QAV+ PV+ K R+ D V L+ G Q L +HGRT Q M
Sbjct: 121 LLLEITKRVVQAVKTPVTVKTRLGWDAENLVIETLCEQLQDCGIQALTIHGRTRAQ--MY 178
Query: 316 TGLASWEHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
TG A W I V++ + IP+I NG+I AD GV VM P +F+
Sbjct: 179 TGKADWTLIGRVKQNPRIHIPIIGNGDITSGADAVRAFQDYGVDAVMVGRATFGCPWIFS 238
Query: 374 GQTRPAWELAS--------EYLDLVAQYPVRLQYAR-GHVFNMCH---HLLT------LP 415
+ R A + S + +D++ + +R+ AR V + H HL +P
Sbjct: 239 -EMRDALDGTSVAKHLTMDDKIDILEE-QLRINVARIDEVRGILHTRRHLAASPIFKGIP 296
Query: 416 ENSDVRLLVGKTNHIKDLRKAVDMLRERFIDYHEGR 451
+ R+ + + + DL ++ R R HE +
Sbjct: 297 DFKQTRIAMLRATKVNDLIAILEECRARLSANHEAK 332
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
G LAPM D +++ +R+L +RYG+ + YT VSA I + + + E+RP
Sbjct: 8 FGEHPLFLAPMEDVTDIGFRMLCKRYGAAMVYTEFVSADAIIRNIQSTLNKMKINAEERP 67
Query: 136 LIIQ 139
+ +Q
Sbjct: 68 VGVQ 71
>gi|313665725|ref|YP_004047596.1| nifR3 family TIM-barrel protein [Mycoplasma leachii PG50]
gi|392389323|ref|YP_005907732.1| tRNA-dihydrouridine synthase [Mycoplasma leachii 99/014/6]
gi|312949868|gb|ADR24464.1| TIM-barrel protein, nifR3 family [Mycoplasma leachii PG50]
gi|339276968|emb|CBV67547.1| tRNA-dihydrouridine synthase [Mycoplasma leachii 99/014/6]
Length = 324
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 156/315 (49%), Gaps = 27/315 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ + PM S +R++S+++G+ L Y MVS + D K ++L + P+ +Q
Sbjct: 11 KVVQGPMAGVSNEAFRIISKQHGASLVYAEMVSVAGMVHDNKKTLDMLNVNKIEHPISMQ 70
Query: 210 FCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSL 266
GN+ + A K E + CD ID+N+GCP VA R G+ L L+ +V ++
Sbjct: 71 IFGNNVEEFITATKWIENNVNCDIIDLNLGCPAPKVAIRSQSGSALLKTPELIYEIVKNV 130
Query: 267 RQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
+ PV+ KIR+ D N VE A+++++AG +AVH RT + TG A WE I
Sbjct: 131 VKNTTKPVTAKIRLGWDKNSVNAVEVAKLIQKAGASAIAVHART--RSDFYTGHADWEKI 188
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQ- 375
V++A++IPVI NG++ + L +TG VM + NP +F TG+
Sbjct: 189 KEVKQAVSIPVIGNGDVIDAKSAKKMLDETGCDAVMISRACQGNPWIFEQINHYLKTGKE 248
Query: 376 -TRPAWE----LASEYLDLVAQY---PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT 427
+P ++ E+L L+ P+ ++ R H + +L L ++L K
Sbjct: 249 LEKPNFDEWKTTVLEHLKLLVDLKTEPIAIKEFRKH---LTWYLDVLNNKQLTKILKEKA 305
Query: 428 NHIKDLRKAVDMLRE 442
N I+ ++ ++++E
Sbjct: 306 NKIETVKDVENIIKE 320
>gi|433446476|ref|ZP_20410459.1| tRNA-dihydrouridine synthase, TIM-barrel nifR3 family
[Anoxybacillus flavithermus TNO-09.006]
gi|432000452|gb|ELK21348.1| tRNA-dihydrouridine synthase, TIM-barrel nifR3 family
[Anoxybacillus flavithermus TNO-09.006]
Length = 333
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 118/222 (53%), Gaps = 6/222 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM +RL + +G+ L MVS + + +L ++PL +Q
Sbjct: 14 VLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILFNNPKTMGMLYIDEREKPLSLQIF 73
Query: 212 GNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G + + L +AAK + H D IDIN+GCP + GA D + ++V+++ A
Sbjct: 74 GGEKETLVQAAKYVDQHTNADIIDINMGCPVPKITKCDAGAKWLLDPNKIYDMVAAVVDA 133
Query: 270 VQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
V+ PV+ K+RI D N VE A+ +ERAG Q +AVHGRT Q M G A W I V
Sbjct: 134 VEKPVTVKMRIGWDENHIYAVENAQAVERAGGQAVAVHGRTRVQ--MYEGKADWNVIKQV 191
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
++A+ IPVI NG++Q D + L QTGV GVM L NP
Sbjct: 192 KEAVRIPVIGNGDVQTPQDAKRMLEQTGVDGVMIGRAALGNP 233
>gi|291547778|emb|CBL20886.1| tRNA-U20-dihydrouridine synthase [Ruminococcus sp. SR1/5]
Length = 324
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 149/311 (47%), Gaps = 20/311 (6%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
F+LAPM ++L +R L + G+ L MVSA K + ++ P + P+ +Q
Sbjct: 16 FVLAPMAGVTDLAFRRLCKEQGAGLICMEMVSAKAISFHNKNTEALMEIDPGEHPVSMQL 75
Query: 211 CGNDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G++ + E AK + E D +DIN+GCP G+ L D L+ +V S+ A
Sbjct: 76 FGSEPDLMAEVAKSIEERPFDILDINMGCPVPKVVNNGEGSALLKDPQLIEEIVRSVSGA 135
Query: 270 VQVPVSCKIRIYQDVN---KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
V PV+ K+RI D N VE A+ +E AG +AVHGRT Q +G A W+ I
Sbjct: 136 VSKPVTVKVRIGFDENTPVDVVEIAKRVEDAGAAAIAVHGRTRQQ--YYSGQADWDAIRR 193
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQT-- 376
V++A+TIPVI NG+I EA +TG VM NP +F TG+
Sbjct: 194 VKEAVTIPVIGNGDIVSPETAEAMFKETGCDAVMIGRAVRGNPWIFRELNHYFRTGEKLP 253
Query: 377 RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHL----LTLPENSDVRLLVGKTNHIKD 432
RP E E + A+ + ++ + M H+ + ++ +R + ++
Sbjct: 254 RPTAEEVCEMILRHAEDQIAIKGEYIGIREMRKHVAWYTAGMRHSAGIRRESNNISSYEE 313
Query: 433 LRKAVDMLRER 443
L+K DM+ ER
Sbjct: 314 LKKLTDMVLER 324
Score = 43.1 bits (100), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 28/237 (11%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
F+LAPM ++L +R L + G+ L MVSA K + ++ P + P+ +Q
Sbjct: 16 FVLAPMAGVTDLAFRRLCKEQGAGLICMEMVSAKAISFHNKNTEALMEIDPGEHPVSMQ- 74
Query: 141 TIFPRLGSPRFILAPMVDA-SELPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQE 195
GS ++A + + E P+ +L G C P V + D +L +E
Sbjct: 75 ----LFGSEPDLMAEVAKSIEERPFDILDINMG---CPVPKVVNNGEGSALLKDPQLIEE 127
Query: 196 IL--MSTPEDRPLIIQF-CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 252
I+ +S +P+ ++ G D + ++A+ D I ++ + G
Sbjct: 128 IVRSVSGAVSKPVTVKVRIGFDENTPVDVVEIAKRVEDAGAAAIAVHGRTRQQYYSG--- 184
Query: 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309
Q DW + + +++AV +PV D+ M + GC + + GR V
Sbjct: 185 QADW----DAIRRVKEAVTIPVIGN----GDIVSPETAEAMFKETGCDAVMI-GRAV 232
>gi|405966201|gb|EKC31509.1| tRNA-dihydrouridine synthase 2-like protein [Crassostrea gigas]
Length = 513
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 141/288 (48%), Gaps = 23/288 (7%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP-------- 201
+ ILAPMV LP RLL+ +YG+ L Y + + + K++ + L +T
Sbjct: 11 KTILAPMVRVGTLPMRLLAVKYGADLVYCEEIIDFKILKSKRVENDALGTTDFVLSDGTI 70
Query: 202 -------EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
E LI Q D+K +AA+ E G+D+N+GCP+ + +G GA L
Sbjct: 71 IFRTHPQEKDKLIFQIGTADAKRALKAAQRIEDLVSGVDVNMGCPKEFSIKGGMGAALLS 130
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
+ ++++L + VPV+CKIRI ++ T++ +++E G L VHGRT ++R
Sbjct: 131 QPEKIKEILTTLVNGLSVPVTCKIRILPELEDTLKLVKLIESTGVSALGVHGRTKEERPR 190
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ + I + ++L+IPVIANG I+ D+ TG + M A +NP
Sbjct: 191 HPNRNNI--IQTIAESLSIPVIANGGSKEVIKVYEDIAVFKQATGCSSAMIARAAEWNPT 248
Query: 371 LFTGQTR-PAWELASEYLDLVAQYPVRLQYARGHVFNMCH-HLLTLPE 416
+F + + P ++ +Y+ + ++ + V M H ++L PE
Sbjct: 249 IFRAEGKLPLLDVVKDYVKVAIEWDNNWVNTKYCVLQMMHDNMLDYPE 296
>gi|251794118|ref|YP_003008849.1| hypothetical protein Pjdr2_0082 [Paenibacillus sp. JDR-2]
gi|247541744|gb|ACS98762.1| TIM-barrel protein, nifR3 family [Paenibacillus sp. JDR-2]
Length = 338
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 122/224 (54%), Gaps = 6/224 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ +LAPM +RL+++ +G+ L MVS + K E+L ++PL +Q
Sbjct: 12 KVVLAPMAGVCNPAFRLIAKEFGTGLVCAEMVSDKAILHGNKRTMEMLFVDEREKPLSLQ 71
Query: 210 FCGNDSKNLTEAAKLAE--PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G D ++L EAAK+ + + D IDIN+GCP + GA D + +VS++
Sbjct: 72 IFGGDRESLVEAAKVVDQQTNADIIDINMGCPVPKVTKCDAGARWLLDPNKIYEMVSAVT 131
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV PV+ K+RI D V+ A+ +E AG + ++VHGRT +Q+ TG A+W+ I
Sbjct: 132 AAVSKPVTVKMRIGWDDEHIYAVDNAKAVESAGGKAVSVHGRTREQQ--YTGKANWDIIR 189
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
V++A++IPVI NG++ D L TG GVM G L NP
Sbjct: 190 DVKQAVSIPVIGNGDVFSPEDARRMLDHTGCDGVMIGRGALGNP 233
>gi|167628121|ref|YP_001678621.1| tRNA-dihydrouridine synthase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167598122|gb|ABZ88120.1| tRNA-dihydrouridine synthase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 324
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/316 (31%), Positives = 159/316 (50%), Gaps = 29/316 (9%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM + +R + + +G+ L YT MVS + E+L ++PL IQ
Sbjct: 15 VLAPMAGFCDSAFRTICKEHGAGLIYTEMVSNKAVVERNWETMEMLYMENIEKPLGIQIF 74
Query: 212 GNDSKNLTEAAK-LAE-PHCDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G D + A K +AE CD +DIN+GCP VAK+ GA L D + +++++ +
Sbjct: 75 GTDIDSFVGATKYIAENTECDFLDINMGCPMPKVAKKLQAGAALLKDVNRIHEILTAVVK 134
Query: 269 AVQVPVSCKIRI-YQDVN-KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV PV+ K+RI + D N +E A+ E AG +A+HGRT +Q M TG A+W+ I
Sbjct: 135 AVHKPVTVKMRIGWDDENINAIEVAKACEDAGVSAIAIHGRTREQ--MYTGKANWDIIRD 192
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRP 378
V+KA+ VI NG++ C +A + TGV VM + NP +F TG+ P
Sbjct: 193 VKKAVDTVVIGNGDVFCPHSAKAMMEHTGVDAVMVGRASRGNPWIFRQIAEYLNTGELIP 252
Query: 379 ------AWELASEYLDLVAQYPVRLQYARGHVFNMCHH----LLTLPENSDVRLLVGKTN 428
E+ E+L + ++L+ A+ V + H L LP + + R+ + +
Sbjct: 253 PPTPVERVEVLGEHL----RRLIKLKTAKVAVKEIRTHASFYLADLPGSKEFRMKLNQLE 308
Query: 429 HIKDLRKAVDMLRERF 444
H +++ + ++ F
Sbjct: 309 HEQEIFRVLEEYSNSF 324
>gi|390348593|ref|XP_787723.2| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Strongylocentrotus purpuratus]
Length = 290
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 92/161 (57%), Gaps = 10/161 (6%)
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEY 386
++ A+ IPV ANGNIQ L DV C+ +TGV GVMTAEGNL+NPALF G W++ EY
Sbjct: 1 MKAAVKIPVFANGNIQSLQDVHRCMEETGVDGVMTAEGNLHNPALFEGTHPKVWDITDEY 60
Query: 387 LDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFID 446
+DLV YP L R H+F + HH L + + D+R+ + + I D + LR R
Sbjct: 61 IDLVKTYPTPLSAVRAHLFKILHHSLMV--HIDLRIDLARAKSIGDCEEICKTLRGRC-- 116
Query: 447 YHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQQE 487
+ P+ P + LP W+CQPY RP+P++ E
Sbjct: 117 ----EEDAAKPDAPTKPE--DGKLPHWLCQPYFRPSPKEAE 151
>gi|406859245|gb|EKD12313.1| dihydrouridine synthase [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 354
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 86/251 (34%), Positives = 127/251 (50%), Gaps = 10/251 (3%)
Query: 130 TPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWR-LLSRRYGSHLCYTPMVSAHQFIA 188
T + PL + + G + APMV S+L +R ++R G L +TPM+ A +F
Sbjct: 2 TNDPSPLELLERVRREEGRVLYAAAPMVRYSKLAFRETVARVGGVDLVWTPMILAKEFNR 61
Query: 189 DKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHY 248
R P P I+Q N + + + L PH +GIDIN GCPQ A
Sbjct: 62 SALARDSDFTLAPSPTPTIVQLGVNSPQEMHRSTLLLAPHVNGIDINCGCPQSWACAETL 121
Query: 249 GAYLQDDWPLLTNLVSSLRQAV-------QVPVSCKIRIYQDVNKTVEYARMLERAGCQL 301
GA L L++ LV S + A+ + VS KIR++ +++T + R +E AG
Sbjct: 122 GAALMHQPALVSALVRSAKSALASLGLQGRKTVSVKIRVHAAIHETRAFVRAVEDAGVDF 181
Query: 302 LAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361
+ VHGRT + ++ + I AV+ A +PV+ANG++ LADV + TGV GVM+
Sbjct: 182 ITVHGRT--RSTPSSKPVDLDAIRAVKAAARVPVLANGDVFTLADVRRVVEATGVDGVMS 239
Query: 362 AEGNLYNPALF 372
A G L +P LF
Sbjct: 240 ARGLLEDPGLF 250
>gi|307544768|ref|YP_003897247.1| hypothetical protein HELO_2178 [Halomonas elongata DSM 2581]
gi|307216792|emb|CBV42062.1| putative TIM-barrel protein, nifR3 family [Halomonas elongata DSM
2581]
Length = 363
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 128/258 (49%), Gaps = 16/258 (6%)
Query: 122 LRQEILMSTPEDRPLIIQRTIFPRLG----SPRFILAPMVDASELPWRLLSRRYGSHLCY 177
L Q+ + S + PL PR+G S R ILAPM ++ P+R L+RR G+ L
Sbjct: 4 LSQQPIASMSDSSPL-------PRIGRHTLSNRVILAPMAGVTDRPFRALARRLGAGLVV 56
Query: 178 TPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKL-AEPHCDGIDINI 236
MV++ + + + + E P +Q G D+ L EAA+L AE + IDIN+
Sbjct: 57 GEMVTSDPNLWHTRKSRLRMDHRGEPGPRAVQIAGGDAAMLAEAARLNAEMGAEVIDINM 116
Query: 237 GCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY--QDVNKTVEYARML 294
GCP G+ L D L+ ++ ++ AV +PV+ KIR + N V AR+
Sbjct: 117 GCPAKKVCNKAAGSALLRDEALVAEILDAVVAAVDIPVTLKIRTGWCAESNNGVRVARLA 176
Query: 295 ERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQT 354
E AG Q LAVHGR QR G A ++ I A++ A+ IPV ANG+I L T
Sbjct: 177 ESAGIQALAVHGRHRQQR--YGGEAEYDTIAAIKAAVGIPVFANGDIDSPEKARRVLDYT 234
Query: 355 GVAGVMTAEGNLYNPALF 372
G VM G NP +F
Sbjct: 235 GADAVMIGRGAQGNPWIF 252
>gi|329962719|ref|ZP_08300642.1| putative tRNA-dihydrouridine synthase B [Bacteroides fluxus YIT
12057]
gi|328529553|gb|EGF56456.1| putative tRNA-dihydrouridine synthase B [Bacteroides fluxus YIT
12057]
Length = 325
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 154/315 (48%), Gaps = 28/315 (8%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD-KKLRQEILMSTPEDRPLI 207
P F LAPM D ++ +RL+ +++G+ + YT VSA I K RQ++ +S E RP+
Sbjct: 12 PTF-LAPMEDVTDPAFRLMCKQFGADMVYTEFVSADALIRSVGKTRQKLNISDAE-RPVT 69
Query: 208 IQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSS 265
IQ G D++ + EAA++ E D +DIN GCP + VA +G LQ + PL+ + +
Sbjct: 70 IQIYGRDTETMVEAARIVEQARPDILDINFGCPVKRVAGKGAGAGMLQ-NVPLMLEITRA 128
Query: 266 LRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ AV++PV+ K R+ D N V+ A L+ G L +HGRT Q M TG A W
Sbjct: 129 VVDAVKIPVTVKTRLGWDANNKIIVDLAEQLQDCGIAALTIHGRTRAQ--MYTGEADWTL 186
Query: 324 ITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------T 373
I V+K + IP+I NG+I + C GV +M + P +F T
Sbjct: 187 IGEVKKNPRMRIPIIGNGDITTPQRAKECFDLYGVDAIMIGRASFGRPWIFKEVKHYLET 246
Query: 374 GQTRP--AWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLT------LPENSDVRLLVG 425
G+ P + E E L + V L R + ++ HL +P D R+ +
Sbjct: 247 GEELPPLSSEWRMEVLRREVEDSVNLLDERRGILHVRRHLAASPLFKGIPNFRDTRIAML 306
Query: 426 KTNHIKDLRKAVDML 440
+ ++L + D +
Sbjct: 307 RAETKEELYRIFDTI 321
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD-KKLRQEILMSTPED 133
+ G LAPM D ++ +RL+ +++G+ + YT VSA I K RQ++ +S E
Sbjct: 7 EFGKYPTFLAPMEDVTDPAFRLMCKQFGADMVYTEFVSADALIRSVGKTRQKLNISDAE- 65
Query: 134 RPLIIQ 139
RP+ IQ
Sbjct: 66 RPVTIQ 71
>gi|220930917|ref|YP_002507825.1| putative TIM-barrel protein, nifR3 family [Halothermothrix orenii H
168]
gi|219992227|gb|ACL68830.1| putative TIM-barrel protein, nifR3 family [Halothermothrix orenii H
168]
Length = 333
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 148/301 (49%), Gaps = 29/301 (9%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLI-IQ 209
ILAPM ++ P+R +SR L YT MVS+ I + ++++ + LI IQ
Sbjct: 12 IILAPMAGVTDYPFRQISREMNCQLIYTEMVSSKGLIYGNRKTRDLMDFDRGKKGLIGIQ 71
Query: 210 FCGNDSKNLTEAAKLAEPHC--DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G D + + AA + H D IDIN+GCP + GA L ++ ++
Sbjct: 72 IFGGDPETMARAAVQIKNHYRPDLIDINMGCPTPKIVKNGSGAALMKVPERAKRVMEAVA 131
Query: 268 QAVQVPVSCKIRIYQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
AV +PV+ KIR+ D VN V+ A++ E G + +A+HGRT + G A+W+ I
Sbjct: 132 SAVDIPVTVKIRMGWDHSHVN-AVDIAKIAEEVGLKAVAIHGRT--REDFYRGEANWDII 188
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQT 376
V++ +TIPVI NG++ D + + +TG GVM A G NP L G+
Sbjct: 189 REVKREVTIPVIGNGDVFTPEDAKKMMEETGCDGVMVARGVRGNPWLLKRAYYLVKKGEH 248
Query: 377 RPA--WE----LASEYLDLVAQY---PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT 427
P WE +A ++LD+ Y V + R H+ +L LP NSD++ V K
Sbjct: 249 LPGPTWEERINMAIKHLDMAVAYYGEKVAIPRMRKHI---GWYLKGLPGNSDIKDRVNKM 305
Query: 428 N 428
N
Sbjct: 306 N 306
>gi|291520867|emb|CBK79160.1| tRNA-U20-dihydrouridine synthase [Coprococcus catus GD/7]
Length = 338
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 121/224 (54%), Gaps = 5/224 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM ++LP+R+L R G + T MVSA K ++ + P++RP+ +Q
Sbjct: 18 ILAPMAGVTDLPFRVLCREQGCGMVCTEMVSAKAITYKNKNTFFLMETVPQERPVSLQLF 77
Query: 212 GNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G+D + EAA++ A+ D +D+N+GCP G+ L L +V SL + +
Sbjct: 78 GSDPDIMAEAARMIADRDFDVLDVNMGCPVPKVVNNGEGSALMKQPELAGRIVRSLVETI 137
Query: 271 QVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
PV+ KIR D + VE A+++E G +AVHGRT +Q +G A W+ I V+
Sbjct: 138 DKPVTVKIRKGFDDDHINAVEMAKIVEANGAAAVAVHGRTREQ--YYSGKADWQIIRRVK 195
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
+A+ IPVI NG++ D + + +TG +M A G NP LF
Sbjct: 196 EAVKIPVIGNGDVFTPQDAKRMIEETGCDAIMAARGARGNPWLF 239
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 99/237 (41%), Gaps = 35/237 (14%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
ILAPM ++LP+R+L R G + T MVSA K ++ + P++RP+ +Q
Sbjct: 18 ILAPMAGVTDLPFRVLCREQGCGMVCTEMVSAKAITYKNKNTFFLMETVPQERPVSLQ-- 75
Query: 142 IFPRLGSPRFILAPMVDA-SELPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQEI 196
GS I+A ++ + +L G C P V + +L I
Sbjct: 76 ---LFGSDPDIMAEAARMIADRDFDVLDVNMG---CPVPKVVNNGEGSALMKQPELAGRI 129
Query: 197 LMSTPE--DRPLIIQF---CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAY 251
+ S E D+P+ ++ +D N E AK+ E N V R Y
Sbjct: 130 VRSLVETIDKPVTVKIRKGFDDDHINAVEMAKIVEA-------NGAAAVAVHGRTREQYY 182
Query: 252 L-QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQ-LLAVHG 306
+ DW ++ +++AV++PV DV + RM+E GC ++A G
Sbjct: 183 SGKADW----QIIRRVKEAVKIPVIGN----GDVFTPQDAKRMIEETGCDAIMAARG 231
>gi|445115320|ref|ZP_21378195.1| tRNA dihydrouridine synthase A [Prevotella nigrescens F0103]
gi|444840431|gb|ELX67463.1| tRNA dihydrouridine synthase A [Prevotella nigrescens F0103]
Length = 323
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 156/317 (49%), Gaps = 22/317 (6%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
G LAPM D +++ +R + +R+G+ + YT VSA I K ++ E+RP
Sbjct: 8 FGERPLFLAPMEDVTDIGFRKMCKRFGAAMVYTEFVSADAVIRSIKSTLNKIVIDEEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D +++ EAAK+ E D IDIN GCP + VA +G G+ + + PLL +
Sbjct: 68 VGIQIYGKDVESMVEAAKVVEQVKPDVIDINFGCPVKKVANKGA-GSGMLKNIPLLLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV PV+ K R+ D N + + A L+ G Q L +HGRT Q M TG A W
Sbjct: 127 REVVKAVNTPVTVKTRLGWDDNNLIITDLAEQLQDCGIQALTIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRP- 378
I V+K + IP+I NG++ + D + GV +M P LF+ P
Sbjct: 185 TLIGEVKKNPRIHIPIIGNGDVTSVFDAQKRFDSYGVDAIMIGRATFGCPWLFSETDAPD 244
Query: 379 AWELA-SEYLDLVAQY----PVRLQYARGHVFNMCHHLLT------LPENSDVRLLVGKT 427
A +L + +D++ + ++ RG + + HL +P+ R+ + +
Sbjct: 245 AKQLTLDDKIDILEEMLRINVEKIDEYRG-ILHTRRHLAASPIFKGVPDFKQTRIAMLRA 303
Query: 428 NHIKDLRKAVDMLRERF 444
N + +L +++ RER
Sbjct: 304 NKMDELIGILEICRERL 320
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
G LAPM D +++ +R + +R+G+ + YT VSA I K ++ E+R
Sbjct: 7 DFGERPLFLAPMEDVTDIGFRKMCKRFGAAMVYTEFVSADAVIRSIKSTLNKIVIDEEER 66
Query: 135 PLIIQ 139
P+ IQ
Sbjct: 67 PVGIQ 71
>gi|355685041|gb|AER97600.1| dihydrouridine synthase 2-like, SMM1-like protein [Mustela putorius
furo]
Length = 499
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 141/296 (47%), Gaps = 27/296 (9%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP-------- 201
+ ILAPMV LP RLL+ YG+ + Y + + + K++ S P
Sbjct: 18 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNGECGSGPRMCVRLDD 77
Query: 202 ---------EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 252
E ++ Q +D++ A+L E GID+N+GCP+ + +G GA L
Sbjct: 78 RVVFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAAL 137
Query: 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR 312
D + ++S+L + + PV+CKIRI + T+ + +ER G + VHGR ++R
Sbjct: 138 LSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAVTVHGRKREER 197
Query: 313 GMNTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYN 368
+ S E I A+ +AL+IPVIANG IQ D+E T + VM A ++N
Sbjct: 198 PQHP--VSCEAIRAIAEALSIPVIANGGSHDHIQKYLDIEDFRQATAASSVMVARAAMWN 255
Query: 369 PALFTGQT-RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
P++F + RP E+ +Y+ QY + + +C L E+ RLL
Sbjct: 256 PSIFLKEGLRPLEEVMQKYIRYAIQYE---NHYTNTKYCLCQMLREQLESPQGRLL 308
>gi|340345527|ref|ZP_08668659.1| Putative TIM-barrel protein, nifR3 family [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339520668|gb|EGP94391.1| Putative TIM-barrel protein, nifR3 family [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 318
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 146/316 (46%), Gaps = 32/316 (10%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIA-------DKKLRQEILMST 200
S R LAPM S+ RL +R G+ L T S H IA +KK QE L +
Sbjct: 6 SSRAFLAPMAGVSDPALRLQCKRMGAGLVVTEFTSIHSIIAKEKQLKENKKNIQEFLEYS 65
Query: 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
++RPL +Q G+D L +AAK+ EP D ID N+GCP + G L + L
Sbjct: 66 EQERPLSVQLFGSDLLALEKAAKIVEPFFDIIDYNMGCPAPHITQQMAGGALLQEINLTQ 125
Query: 261 NLVSSLRQAVQVPVSCKIRIYQDVNKTVEY-----ARMLERAGCQLLAVHGRTVDQRGMN 315
+ S+L AV+ PV+ KIR+ V + Y + + E G Q++ +H RTV Q
Sbjct: 126 QIFSTLVNAVKKPVTLKIRL--GVTEASRYLFKDISEIAEDEGIQMITLHPRTVTQG--Y 181
Query: 316 TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--- 372
+G A W+ I +++ IP++ NG+I D + + QTG +M G + NP LF
Sbjct: 182 SGNADWQMIKELKEISNIPIVGNGDITTPEDAKTMIDQTGCDYIMIGRGAMGNPFLFEQI 241
Query: 373 -----TG-----QTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRL 422
TG + + +YL L QY ++ + + S +R
Sbjct: 242 NDYLTTGTYNKYTFKDKLDAFFDYLHLTTQYKIKFSNIKSQAMRFTKG---MNGGSKLRP 298
Query: 423 LVGKTNHIKDLRKAVD 438
+ ++ ++ +L K ++
Sbjct: 299 KISQSKNLIELEKIMN 314
>gi|337755268|ref|YP_004647779.1| tRNA dihydrouridine synthase B [Francisella sp. TX077308]
gi|336446873|gb|AEI36179.1| tRNA dihydrouridine synthase B [Francisella sp. TX077308]
Length = 324
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 124/226 (54%), Gaps = 7/226 (3%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM + +R + + +G+ L YT MVS + E+L ++PL IQ
Sbjct: 15 VLAPMAGFCDSAFRTICKEHGAGLIYTEMVSNKAVVERNWETIEMLYMENSEKPLGIQIF 74
Query: 212 GNDSKNLTEAAK-LAE-PHCDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G D ++ A K +AE CD +DIN+GCP +AK+ GA L D + +++++ +
Sbjct: 75 GTDLESFVGATKYIAENTECDFLDINMGCPMPKIAKKLQAGAALLKDVDRIHEILTAVVK 134
Query: 269 AVQVPVSCKIRI-YQDVN-KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV PV+ K+RI + D N +E A+ E AG +A+HGRT +Q M TG A+W+ I
Sbjct: 135 AVHKPVTVKMRIGWDDENINAIEVAKACEDAGVSAIAIHGRTREQ--MYTGKANWDIIRD 192
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
VRKA+ VI NG++ C +A + TG+ VM + NP +F
Sbjct: 193 VRKAVDTVVIGNGDVFCPKSAKAMINHTGIDAVMVGRASRGNPWIF 238
>gi|301312349|ref|ZP_07218266.1| TIM-barrel protein, putative, NifR3 family [Bacteroides sp. 20_3]
gi|423337218|ref|ZP_17314962.1| hypothetical protein HMPREF1059_00887 [Parabacteroides distasonis
CL09T03C24]
gi|300829771|gb|EFK60424.1| TIM-barrel protein, putative, NifR3 family [Bacteroides sp. 20_3]
gi|409238406|gb|EKN31199.1| hypothetical protein HMPREF1059_00887 [Parabacteroides distasonis
CL09T03C24]
Length = 329
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 144/288 (50%), Gaps = 23/288 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D +++ +RL+ + +G+ + YT VS+ I Q+ L + ++RP
Sbjct: 8 LGERPVFLAPMEDVTDISFRLMCKSFGADMVYTEFVSSDALIRSVNKTQQKLNVSDDERP 67
Query: 206 LIIQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D ++ EAA++ E D +DIN GCP + VA +G GA + + PL+ +
Sbjct: 68 VAIQIYGKDVASMVEAARICEEARPDILDINFGCPVKKVAGKGA-GAGMLRNIPLMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV +PV+ K R+ D + V+ A L+ G L++HGRT Q M TG A W
Sbjct: 127 KEVVKAVNIPVTVKTRLGWDADNRVIVDLAEQLQDCGIAALSIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I AV+ + IP+I NG++ + GV VM ++ P +F
Sbjct: 185 TLIGAVKNNPRMQIPIIGNGDVTSAEICKQRFEDYGVDAVMIGRASIGRPWIFREVKHYL 244
Query: 373 -TGQTRPAWELASEYLDL----VAQYPVRLQYARGHVFNMCHHLLTLP 415
TG+ P E S YLD+ V Q RL RG + ++ HL P
Sbjct: 245 TTGELLPQ-EPFSWYLDILKKQVEQSVERLDERRG-ILHIRRHLAATP 290
Score = 45.4 bits (106), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LG LAPM D +++ +RL+ + +G+ + YT VS+ I Q+ L + ++RP
Sbjct: 8 LGERPVFLAPMEDVTDISFRLMCKSFGADMVYTEFVSSDALIRSVNKTQQKLNVSDDERP 67
Query: 136 LIIQ 139
+ IQ
Sbjct: 68 VAIQ 71
>gi|378825772|ref|YP_005188504.1| tRNA-dihydrouridine synthase [Sinorhizobium fredii HH103]
gi|365178824|emb|CCE95679.1| probable tRNA-dihydrouridine synthase [Sinorhizobium fredii HH103]
Length = 342
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 119/216 (55%), Gaps = 6/216 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R LAPM ++LP+R+L+ R+G+ T MV++ + + + L ++ D P I+Q
Sbjct: 27 RVALAPMSGVTDLPFRMLAWRFGAGFVVTEMVASRELVGNAAESWARLRNSGID-PHIVQ 85
Query: 210 FCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G ++ + EAAK+ E + D +DIN+GCP G+ G+ L D +L+ + +
Sbjct: 86 LAGREAHWMAEAAKIVEANGADIVDINMGCPAKKVTGGYSGSALMRDPDHALSLIEATVK 145
Query: 269 AVQVPVSCKIRIYQDVNKTVE--YARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV+VPV+ K+R+ D N AR E AG Q + +HGRT Q TG A W+ I A
Sbjct: 146 AVRVPVTLKMRLGWDENSINAPLIARRAEEAGVQAITIHGRTRMQ--FYTGKADWDAIRA 203
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362
VR ++IP+IANG++ + D L ++G VM
Sbjct: 204 VRDVISIPLIANGDVDTITDAVEILRRSGADAVMVG 239
>gi|398349135|ref|ZP_10533838.1| tRNA-dihydrouridine synthase [Leptospira broomii str. 5399]
Length = 319
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/242 (32%), Positives = 131/242 (54%), Gaps = 13/242 (5%)
Query: 145 RLGSPR----FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 200
R+GS F ++PM S+ P R ++RR+GS YT VS K +L
Sbjct: 3 RIGSVEIPGWFAMSPMAGISDSPTRTMARRFGSAFSYTEFVSTDNLAVGSKKALSLLRFR 62
Query: 201 PEDRPLIIQFCGNDSKNLTEAAK-LAEPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPL 258
E+RP+ Q GN + + EAAK + E + D ID+N+GCP + V+ RG L+ P+
Sbjct: 63 DEERPVSFQIFGNKLEIIVEAAKRIRELNPDIIDLNMGCPTKNVSMRGSGVGLLRK--PI 120
Query: 259 LTN-LVSSLRQAVQVPVSCKIRI-YQDVNKT-VEYARMLERAGCQLLAVHGRTVDQRGMN 315
++ +LR+++ +PV+ KIR+ + D + +E +R+LE +G Q ++VHGRT +
Sbjct: 121 YAGKIIEALRKSLDIPVTAKIRLGWDDTTRNYMEVSRILEESGVQAISVHGRTKEMG--Y 178
Query: 316 TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375
+G A W+ I ++ A +P+ NG++ +D GV GV+ ++ NP +F+G
Sbjct: 179 SGKADWDAIADIKAARNVPIFGNGDVVSYSDALHKKNTYGVDGVLIGRNSIGNPWVFSGI 238
Query: 376 TR 377
R
Sbjct: 239 DR 240
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
F ++PM S+ P R ++RR+GS YT VS K +L E+RP+ Q
Sbjct: 13 FAMSPMAGISDSPTRTMARRFGSAFSYTEFVSTDNLAVGSKKALSLLRFRDEERPVSFQ 71
>gi|222148571|ref|YP_002549528.1| nitrogen regulation protein [Agrobacterium vitis S4]
gi|221735557|gb|ACM36520.1| nitrogen regulation protein [Agrobacterium vitis S4]
Length = 332
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 151/298 (50%), Gaps = 18/298 (6%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R +LAPM ++LP+R L+ R+G+ L T MV++ + + + L P ++Q
Sbjct: 20 RVVLAPMSGVTDLPFRQLAFRHGAGLVVTEMVASRELVFNAAESWSRLKGAGL-TPHMVQ 78
Query: 210 FCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G D + EAAK+AE + D IDIN+GCP G+ G+ L + + ++ + +
Sbjct: 79 LAGRDPHWMAEAAKIAEANGADIIDINMGCPAKKVIGGYAGSALMREPEIALAMIEATVK 138
Query: 269 AVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV +PV+ K+R+ D + + +R + AG Q + VHGRT Q G A W+ I A
Sbjct: 139 AVSIPVTVKMRLGWDSDSINAPDLSRRAQDAGVQAITVHGRTRMQ--FYEGRADWDAIAA 196
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA---EGNLYNPALFTGQTRPAWE-- 381
VR A+ IP+IANG+I L D + L ++G +M +G ++ + G P+ E
Sbjct: 197 VRDAIYIPLIANGDIDTLGDAQEILRRSGADAIMLGRACQGRPWHAGVLAGHAPPSAEEI 256
Query: 382 ---LASEYLDLVAQYP--VRLQYARGHV-FNMCHHLLTLPENSDVRLLVGKT-NHIKD 432
+ Y ++ Y V +++AR HV + + H + L L+ K +H+ D
Sbjct: 257 PAIAVAHYRAMLDHYGAHVGVRHARKHVGWYLERHGVQLDPAEKTGLMTSKDPDHVAD 314
>gi|398353347|ref|YP_006398811.1| tRNA-dihydrouridine synthase Dus [Sinorhizobium fredii USDA 257]
gi|390128673|gb|AFL52054.1| putative tRNA-dihydrouridine synthase Dus [Sinorhizobium fredii
USDA 257]
Length = 342
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 126/231 (54%), Gaps = 9/231 (3%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R LAPM ++LP+R L+ R+G+ T MV++ + + + L ++ D P I+Q
Sbjct: 27 RVALAPMSGVTDLPFRRLAWRFGAGFVVTEMVASRELVCNAAESWARLKNSGID-PHIVQ 85
Query: 210 FCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G ++ + EAAK+ E + D +DIN+GCP G+ G+ L D +L+ + +
Sbjct: 86 LAGREAHWMAEAAKIVEANGADIVDINMGCPAKKVTGGYSGSALMRDPDHALSLIEATVK 145
Query: 269 AVQVPVSCKIRIYQDVNKTVE--YARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV+VPV+ K+R+ D N AR E AG Q + +HGRT Q +G A W+ I A
Sbjct: 146 AVRVPVTLKMRLGWDENSINAPLIARRAEAAGVQAITIHGRTRMQ--FYSGKADWDAIRA 203
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA---EGNLYNPALFTG 374
VR A++IP+IANG++ +AD L ++G VM +G ++ + G
Sbjct: 204 VRDAISIPLIANGDVDAVADATEILRRSGADAVMVGRSCQGRPWHAGVLAG 254
>gi|347755813|ref|YP_004863377.1| putative TIM-barrel protein, nifR3 family [Candidatus
Chloracidobacterium thermophilum B]
gi|347588331|gb|AEP12861.1| putative TIM-barrel protein, nifR3 family [Candidatus
Chloracidobacterium thermophilum B]
Length = 355
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 149/296 (50%), Gaps = 24/296 (8%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLI 207
P +LAPM ++ +R L +R G L T +S +++ T +RP+
Sbjct: 18 PPLVLAPMAGVTDSAFRGLIKRLGGVGLIVTEFISVEGLTRGNLKTHKMMKFTDAERPIS 77
Query: 208 IQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSS 265
IQF G D K + +AA++A E D +D+N GCP + V RG G+ L D P L ++
Sbjct: 78 IQFFGVDPKRMADAAEVAQEAGADIVDVNCGCPAKKVVGRGA-GSSLLRDLPHLAVILRE 136
Query: 266 LRQAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+R+ + +P++ KIR D N VE ++ E G + +A+HGRT Q +G A+W+
Sbjct: 137 MRRRITIPLTIKIRTGWDDNSIVAVEVGKLAEDCGVEAIAIHGRTRMQG--YSGFANWDI 194
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF-------TGQT 376
I V++A++IPVI G+++ AD +TGV GVM G + NP +F G+T
Sbjct: 195 IAQVKQAVSIPVIGCGDVRQPADAIRRFRETGVDGVMIGRGAMANPWIFRQTAEAMRGET 254
Query: 377 --RPAW----ELASEYLDL-VAQYPVRLQYARGHVFNMCHHLLT-LPENSDVRLLV 424
RP ++ EY DL +A+ P A G V +C LP + R V
Sbjct: 255 PYRPTLYDKRDVLLEYFDLMLAECPTE-TAAMGKVKQLCAQFTKGLPGGAIFRTQV 309
>gi|238650328|ref|YP_002916180.1| nifR3-like protein [Rickettsia peacockii str. Rustic]
gi|238624426|gb|ACR47132.1| nifR3-like protein [Rickettsia peacockii str. Rustic]
Length = 339
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 160/329 (48%), Gaps = 33/329 (10%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK--LRQEILMSTPEDRP 205
S ILAPM ++L +R L +R+G+ L + MV++ I + + L++ +M +
Sbjct: 18 SSNIILAPMSGVTDLEFRRLVKRFGAGLVVSEMVASRAMIVESRQSLKKSAIMR-DDATS 76
Query: 206 LIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
+Q G + + EAAK+ E ID+N GCP G+ G+ L D L +
Sbjct: 77 ACVQLAGCEPNVIAEAAKMNEGMGAKIIDLNFGCPAKKVVGGYSGSALMRDEQLAAKIFE 136
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVE--YARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
+ +AV++PV+ K+R+ D N A++ E +G Q++ VHGRT Q +G A W+
Sbjct: 137 ATVEAVKLPVTVKMRMGWDDNTKNAPTLAKIAESSGVQMITVHGRTRCQ--FYSGNADWD 194
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TG 374
I +V++++ IPVIANG+I A +A L ++G G+M G P L TG
Sbjct: 195 FIRSVKESVKIPVIANGDITNFAKAKAALQKSGADGIMVGRGAYGKPWLISQIDHYLKTG 254
Query: 375 QTRPAWELASEYLDLVAQ-YPVRLQY---------ARGHVFNMCHHLLTLPENSDVRLLV 424
+ + A +A E LD+V + Y L Y AR H+ + LP +++ R
Sbjct: 255 EEKSAPSIA-EQLDIVTEHYEAILDYYGESVGVPIARKHI---GWYSSGLPNSAEFR--- 307
Query: 425 GKTNHIKDLRKAVDMLRERFIDYHEGRKL 453
G N + D + + E + E KL
Sbjct: 308 GAVNLMNDPLAVKEKIAEFYTSVMETNKL 336
>gi|328851127|gb|EGG00285.1| hypothetical protein MELLADRAFT_93719 [Melampsora larici-populina
98AG31]
Length = 321
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 132/287 (45%), Gaps = 28/287 (9%)
Query: 156 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR----------- 204
MV S+LP+R L Y +H+ +TPM+ A +F +K R + P +R
Sbjct: 1 MVRYSKLPFRQLVSEYETHITFTPMILAKEFSLSQKARDSDFSTNPFERGTFSMIDSSNQ 60
Query: 205 -------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
L+ Q GN+S + AA+L +P+ DGIDIN GCPQ A + G+ L
Sbjct: 61 STRLVKGSLVAQLGGNESFYMAHAAELLQPYVDGIDINCGCPQSWAYKEGIGSALLRKPD 120
Query: 258 LLTNLVSSLRQ--AVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
L+ +LV ++ PVS KIR+ D+ T + A + VHGRT Q +
Sbjct: 121 LVRDLVRGIKTKCGETFPVSIKIRVDDDLQHTSRLIKTALAANVSFITVHGRTRHQ--AS 178
Query: 316 TGLASWEHIT-AVRKALT-----IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
+ S++ I A +A T +P ANGN+ LAD + GV GVM+A G NP
Sbjct: 179 SEPVSYDSIKFAAEEATTGSDGGVPTAANGNVFTLADAQKTRELCGVKGVMSARGLQENP 238
Query: 370 ALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPE 416
ALF G R ++ + AQ H+ +M + T E
Sbjct: 239 ALFAGYERIPLSGVQRFITISAQTGFIFPLYHRHLADMLGNWFTSKE 285
>gi|390338395|ref|XP_003724768.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
2 [Strongylocentrotus purpuratus]
Length = 540
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 133/264 (50%), Gaps = 22/264 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS---------- 199
+ ILAPMV LP RLL+ YG+ + Y + + + ++ +L +
Sbjct: 10 KVILAPMVRIGTLPTRLLALEYGADIVYCQELIDFKMLTCRRHVNRVLDTVDYISKDDVV 69
Query: 200 -----TPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
+ E L+ Q D++ AK+ E GIDIN+GCP+ + +G GA L
Sbjct: 70 IFRTCSKETDRLVFQMGTADAQRALRVAKMVEKDVSGIDINMGCPKDFSLKGGMGAALLQ 129
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
+ ++++L Q V++PV+CKIRI + T+ A+M+E+ G LAVHGR ++R
Sbjct: 130 KPDTIKEILTTLVQGVKIPVTCKIRILPKLEDTIALAKMIEQTGVAALAVHGRLTEERPR 189
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ + I AV +++IP+I NG I+ AD+E TG + VM A +NP+
Sbjct: 190 HP--VHCDAIKAVADSISIPLITNGGSQDIIKSYADIERFREMTGASSVMIAREAQWNPS 247
Query: 371 LFTGQTR-PAWELASEYLDLVAQY 393
+F + + P+ ++A Y+ Y
Sbjct: 248 IFRKEGKLPSHDVAQRYIQYSVDY 271
>gi|210610329|ref|ZP_03288358.1| hypothetical protein CLONEX_00548 [Clostridium nexile DSM 1787]
gi|210152559|gb|EEA83565.1| hypothetical protein CLONEX_00548 [Clostridium nexile DSM 1787]
Length = 324
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 124/226 (54%), Gaps = 5/226 (2%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
+ILAPM ++LP+RLL + G+ L MVSA + K + +L PE+ P+ +Q
Sbjct: 15 YILAPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAIQYNNKNTKALLEIHPEELPVSLQL 74
Query: 211 CGNDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G+D ++E AK + E +DIN+GCP + G+ L + L+ +V +A
Sbjct: 75 FGSDPDVISEIAKRIEELPFSILDINMGCPVPKIVKNGEGSALMKNPKLVYEIVRKTARA 134
Query: 270 VQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
+Q PV+ KIR D VE A+++E AG + +AVHGRT +Q +G A W+ I V
Sbjct: 135 IQKPVTVKIRKGFDDTCINAVEIAKIIEDAGGKAVAVHGRTREQ--YYSGKADWDIIRQV 192
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
++A++IPVI NG++ A +TG GVM G NP +F+
Sbjct: 193 KEAVSIPVIGNGDVVSGESAIAIQKETGCDGVMIGRGAQGNPWIFS 238
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 22/201 (10%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQR 140
+ILAPM ++LP+RLL + G+ L MVSA + K + +L PE+ P+ +Q
Sbjct: 15 YILAPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAIQYNNKNTKALLEIHPEELPVSLQ- 73
Query: 141 TIFPRLGS-PRFILAPMVDASELPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQE 195
GS P I ELP+ +L G C P + + + KL E
Sbjct: 74 ----LFGSDPDVISEIAKRIEELPFSILDINMG---CPVPKIVKNGEGSALMKNPKLVYE 126
Query: 196 ILMSTPE--DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 253
I+ T +P+ ++ A ++A+ D + ++ + G +
Sbjct: 127 IVRKTARAIQKPVTVKIRKGFDDTCINAVEIAKIIEDAGGKAVAVHGRTREQYYSG---K 183
Query: 254 DDWPLLTNLVSSLRQAVQVPV 274
DW +++ +++AV +PV
Sbjct: 184 ADW----DIIRQVKEAVSIPV 200
>gi|224064274|ref|XP_002192167.1| PREDICTED: dihydrouridine synthase 2-like, SMM1 homolog-like
[Taeniopygia guttata]
Length = 490
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 134/262 (51%), Gaps = 22/262 (8%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST----PEDR--- 204
ILAPMV LP RLL+ YG+ + Y + + + K++ E+L + P DR
Sbjct: 14 ILAPMVRVGTLPMRLLALDYGADIVYCEELIDIKMMQCKRVINEVLETVDFVAPNDRVVF 73
Query: 205 --------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
++ Q D++ AKL E GIDIN+GCP+ + +G GA L D
Sbjct: 74 RTCERERERVVFQMGSADAERALAVAKLVESDVAGIDINMGCPKEYSTKGGMGAALLSDP 133
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
+ +++++L + + PV+CKIRI V TV + +E+ G +AVHGR ++R +
Sbjct: 134 DKIESILTTLVKGICKPVTCKIRILPSVEDTVNLVKRIEKTGIAAIAVHGRKKEERPQHP 193
Query: 317 GLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
+ I A+ +A++IPVIANG I+ AD+E T + VM A ++NP++F
Sbjct: 194 --VHCDVIKAISEAVSIPVIANGGSHDFIKEYADIETFQKATAASSVMIARAAMWNPSVF 251
Query: 373 TGQTR-PAWELASEYLDLVAQY 393
+ P ++ +Y+ +Y
Sbjct: 252 RKEGFCPLKDVMQDYIKYAVRY 273
>gi|375088140|ref|ZP_09734482.1| nifR3 family putative TIM-barrel protein [Dolosigranulum pigrum
ATCC 51524]
gi|374562970|gb|EHR34293.1| nifR3 family putative TIM-barrel protein [Dolosigranulum pigrum
ATCC 51524]
Length = 340
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 116/224 (51%), Gaps = 6/224 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ +APM + +R + + +G+ L MVS + K ++L P + PL IQ
Sbjct: 12 KICVAPMAGVTNAAFRTIVKEFGAGLVVCEMVSDKALVHRNKKSLQMLHIEPNEYPLSIQ 71
Query: 210 FCGNDSKNLTEAAKLAEPHCDG--IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G D+ ++ EAA+ E D +DIN+GCP + G+ L + + LVS +
Sbjct: 72 IMGGDTTSMVEAAQFIEKETDAAILDINMGCPVPKITKNDAGSKLLLEPDYIYELVSRVV 131
Query: 268 QAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV +PV+ K+R D + VE A ERAG Q+LA+HGRT Q M G A WE +
Sbjct: 132 DAVSMPVTVKMRTAWDEDHMWPVENALAAERAGAQMLAMHGRTRVQ--MYEGQADWEILR 189
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
V++A+ IP +ANG+I ADV+ L TG VM L NP
Sbjct: 190 QVQEAINIPFVANGDIATPADVDEVLRVTGADAVMVGRAALGNP 233
>gi|291534721|emb|CBL07833.1| tRNA-U20-dihydrouridine synthase [Roseburia intestinalis M50/1]
Length = 330
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 130/251 (51%), Gaps = 17/251 (6%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
ILAPM ++LP+RLL + G+ L MVSA + + +E+L + P+ +Q
Sbjct: 18 LILAPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAILYKNRNTEELLTIDKRENPVSLQL 77
Query: 211 CGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G+D ++E AK E D +DIN+GCP G+ L + L ++ +A
Sbjct: 78 FGSDPDIMSEIAKQIEDRPFDILDINMGCPVPKVVNNGDGSALMKNPKLAGEIIEKTARA 137
Query: 270 VQVPVSCKIRIYQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
++ PV+ KIR D VN VE A + + +G +AVHGRT Q +G A W+ I
Sbjct: 138 IKKPVTVKIRKGFDEEHVN-AVEMAHIAQESGAAAVAVHGRTRSQ--FYSGKADWDIIRQ 194
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQT-- 376
V++A++IPVI NG+I ADV A QTG G M A G NP +F TG+
Sbjct: 195 VKEAVSIPVIGNGDILTAADVIAMQKQTGCDGFMIARGAEGNPWIFAQILHYFKTGEELP 254
Query: 377 RPAWELASEYL 387
+P +E ++ L
Sbjct: 255 KPTFEEVTQML 265
>gi|163845808|ref|YP_001633852.1| NifR3 family TIM-barrel protein [Chloroflexus aurantiacus J-10-fl]
gi|222523518|ref|YP_002567988.1| nifR3 family TIM-barrel protein [Chloroflexus sp. Y-400-fl]
gi|163667097|gb|ABY33463.1| TIM-barrel protein, nifR3 family [Chloroflexus aurantiacus J-10-fl]
gi|222447397|gb|ACM51663.1| TIM-barrel protein, nifR3 family [Chloroflexus sp. Y-400-fl]
Length = 350
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 99/316 (31%), Positives = 152/316 (48%), Gaps = 21/316 (6%)
Query: 149 PRFILAPMVDASELPWR-LLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLI 207
P ILAPM ++ +R ++ R G L T M +A R +L PE+RPL
Sbjct: 26 PNIILAPMAGVTDSIFRRMILRLGGCGLVSTEMTNAASVSPKALRRHRLLDYLPEERPLT 85
Query: 208 IQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSL 266
+Q GND + AA++ E D IDIN GCP G +G+ L D P + L+ ++
Sbjct: 86 MQISGNDPDLVANAARVVEQLGADIIDINCGCPSPKVTGGGHGSALLRDLPKMERLLRAV 145
Query: 267 RQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
R+AVQ+PV+ K R D +E + E AG LA+H RT +Q G A W +
Sbjct: 146 REAVQIPVTLKFRAGWDEQSLNFIEAGKRAEAAGVSALALHPRTREQ--GYKGQADWSRV 203
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF-------TGQT- 376
A+++A++IPVI +G++ D L +G GVM G + NP +F G T
Sbjct: 204 AALKQAVSIPVIGSGDVTSAHDALIRLRDSGADGVMIGRGAMANPWIFRQIADLRRGVTP 263
Query: 377 ---RPA--WELASEYLDLVA-QYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHI 430
PA L EY+ + A + P RL + H + LP ++ +R+ V + +
Sbjct: 264 YVPTPADKRNLLIEYMTICAEELPERLALNKIKQLIGQFH-VGLPGSNHLRVAVHTSTSL 322
Query: 431 KDLRKAVDMLRERFID 446
+ R A++ F++
Sbjct: 323 AEARDAIERFFAPFLE 338
>gi|54114569|gb|AAV29918.1| NT02FT1147 [synthetic construct]
Length = 327
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 162/317 (51%), Gaps = 25/317 (7%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM + + + + +G+ L YT MVS + E+L ++PL IQ
Sbjct: 15 VLAPMAGFCDSAFPTICKEHGAGLIYTEMVSNKAVVEHNWETMEMLYMENSEKPLGIQIF 74
Query: 212 GNDSKNLTEAAK-LAE-PHCDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G D + A K +AE CD +DIN+GCP VAK+ GA L D + +++++ +
Sbjct: 75 GTDINSFVGATKYIAENTECDFLDINMGCPMPKVAKKLQAGAALLKDVNRIHEILTAVVK 134
Query: 269 AVQVPVSCKIRI---YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV PV+ K+RI Q++N +E A+ + AG +A+HGRT +Q M TG A+W+ I
Sbjct: 135 AVHKPVTVKMRIGWDEQNIN-AIEVAKACQDAGVSAIAIHGRTREQ--MYTGKANWDIIR 191
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTR 377
VRKA+ VI NG++ C +A + TGV VM + NP +F TG+
Sbjct: 192 DVRKAVDTVVIGNGDVFCPHSAKAMMEHTGVDAVMVGRASRGNPWIFRQIAEYLNTGELI 251
Query: 378 PAWELASEYLDLVAQY---PVRLQYARGHVFNMCHH----LLTLPENSDVRLLVGKTNHI 430
P E +D++ ++ ++L+ A+ V + H L LP + + R+ + + H
Sbjct: 252 PP-PTPVERVDVLEEHLRRLIKLKTAKVAVKEIRTHASFYLQDLPNSKEFRMKLNQLEHE 310
Query: 431 KDLRKAVDMLRERFIDY 447
+++ K ++ ++ +
Sbjct: 311 QEIFKVLEEYKKSLYKF 327
>gi|67458404|ref|YP_246028.1| nifR3 family TIM-barrel protein [Rickettsia felis URRWXCal2]
gi|75537122|sp|Q4UNJ4.1|DUS_RICFE RecName: Full=Probable tRNA-dihydrouridine synthase
gi|67003937|gb|AAY60863.1| Putative TIM-barrel protein, nifR3 family [Rickettsia felis
URRWXCal2]
Length = 325
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 139/267 (52%), Gaps = 20/267 (7%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM-STPEDRPL 206
S ILAPM D ++L +R L +R+G+ L + M+++ + K RQ + + D P
Sbjct: 10 SSNVILAPMSDITDLEFRKLVKRFGAGLVVSEMIASRAMVV--KSRQSMQKCAIVHDDPT 67
Query: 207 --IIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
+Q G + + EAAK+ E ID+N GCP G+ G+ L D L +
Sbjct: 68 SACVQLAGCEPNVIAEAAKMNEDMGAKIIDLNFGCPAKKVVGGYAGSALMRDEQLAAKIF 127
Query: 264 SSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV++P++ K+R+ D N + A++ E +G Q++ VHGRT Q +G A W
Sbjct: 128 EATVKAVKIPITVKMRMGWDDNTKNAPDLAKIAESSGVQMVTVHGRTRCQ--FYSGNADW 185
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------T 373
+ I +V++A+ IPVIANG+I A + L ++G G+M G P L T
Sbjct: 186 DFIRSVKEAVKIPVIANGDITNFAKAKEALQKSGADGIMVGRGAYGKPWLVSQIAHYLKT 245
Query: 374 GQTRPAWELASEYLDLVAQ-YPVRLQY 399
G+ +PA +A E LD+V + Y L Y
Sbjct: 246 GEEKPAPSIA-EQLDIVTEHYNAILDY 271
>gi|395785656|ref|ZP_10465384.1| hypothetical protein ME5_00702 [Bartonella tamiae Th239]
gi|423717452|ref|ZP_17691642.1| hypothetical protein MEG_01182 [Bartonella tamiae Th307]
gi|395424114|gb|EJF90301.1| hypothetical protein ME5_00702 [Bartonella tamiae Th239]
gi|395427667|gb|EJF93758.1| hypothetical protein MEG_01182 [Bartonella tamiae Th307]
Length = 328
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/222 (36%), Positives = 124/222 (55%), Gaps = 18/222 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVS-----AHQFIADKKLRQEILMSTPEDR 204
R LAPM S+LP+RL S + G+ + + MV+ AH + K+++ + L S
Sbjct: 18 RVFLAPMSGVSDLPFRLRSWKAGAGMVISEMVASGELCAHSSESLKRIKGDGLSSH---- 73
Query: 205 PLIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
+IQ G ++K + AA++A E H D IDIN+GCP G+ GA L D L +L+
Sbjct: 74 --VIQLAGREAKWMALAAEIAQEAHVDMIDINMGCPAKKVTGGYSGAALMRDIKLSMSLI 131
Query: 264 SSLRQAVQVPVSCKIRI---YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320
S+ + +VPVS K+R+ Q +N E A++ E AG ++ VHGRT Q G A+
Sbjct: 132 ESVLKVAKVPVSLKMRLGWDEQSINAP-EIAKLAENAGIAMITVHGRTRMQ--FYHGQAN 188
Query: 321 WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362
W+ I VR ++IP+IANG+I+ D E C+ ++G VM
Sbjct: 189 WDAIARVRDRISIPLIANGDIKTRQDAEICMQKSGADAVMVG 230
>gi|291543545|emb|CBL16654.1| tRNA-U20-dihydrouridine synthase [Ruminococcus champanellensis
18P13]
Length = 336
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 124/239 (51%), Gaps = 6/239 (2%)
Query: 138 IQRTIFPRLGSPRFI-LAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEI 196
+ R L PR LAPM ++ +R L R +G+ + + ++SA + E+
Sbjct: 1 MNRVTIAGLELPRTAALAPMASVADRAYRQLCRSFGACMVTSELISAKGMCYNDSKTAEL 60
Query: 197 LMSTPEDRPLIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDD 255
TPE+RP+ +Q G++ K + +A KL P D ID+N+GCP G+ L D
Sbjct: 61 CTITPEERPMALQLFGSEPKFIQQAVKLLLPFQPDVIDLNMGCPVPKVVNTGAGSALMQD 120
Query: 256 WPLLTNLVSSLRQAVQVPVSCKIRI--YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313
+LV++ R A VPV+ KIR +D VE+A + AG Q +A+HGRT Q
Sbjct: 121 LNTAADLVAAARMASDVPVTVKIRRGWSEDTVNCVEFACRMAEAGAQAIAIHGRTRSQ-- 178
Query: 314 MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
M +G A W I AV++A+++PVI NG++ AD +TG VM + NP +F
Sbjct: 179 MYSGKADWSCIRAVKQAVSVPVIGNGDVCSGADCLNMYRETGCDLVMVGRASYGNPWIF 237
>gi|240143461|ref|ZP_04742062.1| tRNA-dihydrouridine synthase [Roseburia intestinalis L1-82]
gi|257204494|gb|EEV02779.1| tRNA-dihydrouridine synthase [Roseburia intestinalis L1-82]
Length = 330
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 130/251 (51%), Gaps = 17/251 (6%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
ILAPM ++LP+RLL + G+ L MVSA + + +E+L + P+ +Q
Sbjct: 18 LILAPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAILYKNRNTEELLTIDKRENPVSLQL 77
Query: 211 CGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G+D ++E AK E D +DIN+GCP G+ L + L ++ +A
Sbjct: 78 FGSDPDIMSEIAKQIEDRPFDILDINMGCPVPKVVNNGDGSALMKNPKLAGEIIEKTARA 137
Query: 270 VQVPVSCKIRIYQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
++ PV+ KIR D VN VE A + + +G +AVHGRT Q +G A W+ I
Sbjct: 138 IKKPVTVKIRKGFDEEHVN-AVEMAHIAQESGAAAVAVHGRTRSQ--FYSGKADWDIIRQ 194
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQT-- 376
V++A++IPVI NG+I ADV A QTG G M A G NP +F TG+
Sbjct: 195 VKEAVSIPVIGNGDILTAADVIAMQKQTGCDGFMIARGAEGNPWIFAQILHYFKTGEELP 254
Query: 377 RPAWELASEYL 387
+P +E ++ L
Sbjct: 255 KPTFEEVTQML 265
>gi|189464643|ref|ZP_03013428.1| hypothetical protein BACINT_00986 [Bacteroides intestinalis DSM
17393]
gi|189436917|gb|EDV05902.1| TIM-barrel protein, nifR3 family [Bacteroides intestinalis DSM
17393]
Length = 329
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 137/272 (50%), Gaps = 12/272 (4%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D ++ +RL+ +++G+++ YT VSA I ++ L + E+RP
Sbjct: 8 LGECPIFLAPMEDVTDPAFRLMCKKFGANMVYTEFVSADALIRSVSKTEQKLNISDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D++ + EAA++ E D +DIN GCP + VA +G LQ + P + +
Sbjct: 68 VAIQIYGKDTETMVEAARIVEEARPDILDINFGCPVKRVAGKGAGAGMLQ-NIPKMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
++ AV++PV+ K R+ D N V+ A L+ G L +HGRT Q M TG A W
Sbjct: 127 RAVVDAVKIPVTVKTRLGWDANNKIIVDLAEQLQDCGIAALTIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPA 379
I V+K + IP+I NG++ + C GV +M + P +F + R
Sbjct: 185 TLIGEVKKNPRMHIPIIGNGDVTTPQRAKECFELYGVDAIMIGRASFGRPWIFK-EVRHY 243
Query: 380 WELASEYLDLVAQYPVRLQYARGHVFNMCHHL 411
E E L A++ +L R V + + L
Sbjct: 244 LETGEELPPLSAEW--KLGVLRQEVIDSVNLL 273
Score = 45.4 bits (106), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
LG LAPM D ++ +RL+ +++G+++ YT VSA I ++ L + E+R
Sbjct: 7 DLGECPIFLAPMEDVTDPAFRLMCKKFGANMVYTEFVSADALIRSVSKTEQKLNISDEER 66
Query: 135 PLIIQ 139
P+ IQ
Sbjct: 67 PVAIQ 71
>gi|423281400|ref|ZP_17260311.1| hypothetical protein HMPREF1203_04528 [Bacteroides fragilis HMW
610]
gi|404583104|gb|EKA87787.1| hypothetical protein HMPREF1203_04528 [Bacteroides fragilis HMW
610]
Length = 325
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 97/322 (30%), Positives = 158/322 (49%), Gaps = 35/322 (10%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D ++ +RL+ +++G+ + YT VS+ I + L E+RP
Sbjct: 8 LGERPVFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSSDALIRSVNKTTQKLTICDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D++ + AA++ E D +DIN GCP + VA +G LQ + P + +
Sbjct: 68 VAIQIYGKDTEAMVGAARIVEEAQPDILDINFGCPVKKVAGKGAGAGMLQ-NIPKMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
++ AV++PV+ K R+ D + V+ A L+ G LA+HGRT Q M TG A W
Sbjct: 127 RAVVDAVKIPVTVKTRLGWDADHKIIVDLAEQLQDCGIAALAIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I V+ + IP+I NG++ + C + GV +M G++ P +F
Sbjct: 185 TLIGEVKNNPRMHIPIIGNGDVTSATGAKECFERYGVDAIMIGRGSIGRPWIFREVKHYL 244
Query: 373 -TGQTRP--AWE-----LASEYLDLVAQYPVRLQYARGHVFNMCHHLLT------LPENS 418
TG+ P ++E L E L+ VA RL RG + ++ HL +P
Sbjct: 245 ETGEELPQESFEWYLNVLREEVLNSVA----RLDERRG-IIHIRRHLAATPLFKGIPNFR 299
Query: 419 DVRLLVGKTNHIKDLRKAVDML 440
+ R+ + +T +++L + D L
Sbjct: 300 ETRIAMLRTESVEELFRIFDGL 321
Score = 42.4 bits (98), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
LG LAPM D ++ +RL+ +++G+ + YT VS+ I + L E+R
Sbjct: 7 DLGERPVFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSSDALIRSVNKTTQKLTICDEER 66
Query: 135 PLIIQ 139
P+ IQ
Sbjct: 67 PVAIQ 71
>gi|358342243|dbj|GAA49751.1| tRNA-dihydrouridine synthase 2, partial [Clonorchis sinensis]
Length = 1120
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 146/297 (49%), Gaps = 27/297 (9%)
Query: 135 PLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ 194
PL+ ++F +G + IL PMV S P RLL+ RYG+ +T + + + ++
Sbjct: 492 PLMRATSLFDPVG--KVILGPMVRISTHPMRLLALRYGADYVFTEEIIDQKLLRSVRVVN 549
Query: 195 EIL---------------MSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCP 239
+ L S E +I+Q D++ AA + + IDIN+GCP
Sbjct: 550 DELGTIDYVLPDGMITFRTSLAERNRVILQLGTPDAERALRAATMVQNDVLAIDINMGCP 609
Query: 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC 299
+ + +G GA L + +++ L A+++PV+CKIRI + KT+ +++E G
Sbjct: 610 KDYSVKGGMGAALLTQPEKVKEILTRLTSALRIPVTCKIRILPQLEKTLTLVKLIESTGV 669
Query: 300 QLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTG 355
L VHGRT +R + E I AV A++IPVIANG I+ D++ QTG
Sbjct: 670 AALTVHGRTPSERPQHRNHD--EVIVAVASAVSIPVIANGGSWDTIRSHEDIQFFRQQTG 727
Query: 356 VAGVMTAEGNLYNPALFTGQTRPA---WELASEYLDLVAQYPVRLQYARGHVFNMCH 409
AGVM ++NPA+F+ PA +L EYL L +Y + + + +M H
Sbjct: 728 AAGVMVCRAAMWNPAIFSSAC-PAPTLHDLIREYLALAVRYDHHIAGTKYCIQSMLH 783
>gi|366997432|ref|XP_003678478.1| hypothetical protein NCAS_0J01610 [Naumovozyma castellii CBS 4309]
gi|342304350|emb|CCC72140.1| hypothetical protein NCAS_0J01610 [Naumovozyma castellii CBS 4309]
Length = 344
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 90/307 (29%), Positives = 148/307 (48%), Gaps = 18/307 (5%)
Query: 147 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 206
G I PMV S+LP+R L R Y + + Y+PM+ A +F+ + R + +D PL
Sbjct: 28 GKTTTIAGPMVRYSKLPFRQLVRDYNTDIVYSPMILAREFVRNSNARLFDFSTNYKDTPL 87
Query: 207 IIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSL 266
++Q N+ +L + ++ P+ D I IN GCP R G L + LL ++V ++
Sbjct: 88 VVQVGVNNVTDLLKFVEMVAPYVDAIGINCGCPIREQVREGIGCALIYNEELLIDMVHAV 147
Query: 267 RQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT-VDQRGMNTGLASWEH 323
++ ++ + KIRI+ D+ +T++ L G L +HGRT V + L + +
Sbjct: 148 KRKYGDKLRLETKIRIHDDLQRTLKLCLNLCSVGVDWLTIHGRTKVTRSSQPVKLDAIKF 207
Query: 324 ITAV--RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWE 381
+T K PV+ANG+ L DV+ TGV GVM G L NPALF G + W
Sbjct: 208 LTTGIHEKYPDKPVVANGDCFHLDDVKRIQEYTGVQGVMAVRGILANPALFAGYDKCPWS 267
Query: 382 LASEYLDLVAQY---PVRLQYARGHVFNMCHHLLTLPENSDV-RLLVGKTNHIKDLRKAV 437
+ ++ P +L + HHL + EN ++ + L+ + + K L + +
Sbjct: 268 CIERFWYYAIEFGGLPYQL---------IQHHLFCMLENMNISKDLIKEMMNAKSLPQLL 318
Query: 438 DMLRERF 444
D + F
Sbjct: 319 DWFDDHF 325
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 12/149 (8%)
Query: 77 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 136
G I PMV S+LP+R L R Y + + Y+PM+ A +F+ + R + +D PL
Sbjct: 28 GKTTTIAGPMVRYSKLPFRQLVRDYNTDIVYSPMILAREFVRNSNARLFDFSTNYKDTPL 87
Query: 137 IIQRTIFPRLGSPRFI--LAPMVDASEL----PWRLLSRR-YGSHLCYTP-----MVSAH 184
++Q + +F+ +AP VDA + P R R G L Y MV A
Sbjct: 88 VVQVGVNNVTDLLKFVEMVAPYVDAIGINCGCPIREQVREGIGCALIYNEELLIDMVHAV 147
Query: 185 QFIADKKLRQEILMSTPEDRPLIIQFCGN 213
+ KLR E + +D ++ C N
Sbjct: 148 KRKYGDKLRLETKIRIHDDLQRTLKLCLN 176
>gi|340351738|ref|ZP_08674641.1| nitrogen regulation protein Nifr3 [Prevotella pallens ATCC 700821]
gi|339616952|gb|EGQ21587.1| nitrogen regulation protein Nifr3 [Prevotella pallens ATCC 700821]
Length = 323
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 156/317 (49%), Gaps = 22/317 (6%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
G LAPM D +++ +R + +R+G+ + YT VSA I K ++ ++RP
Sbjct: 8 FGERPLFLAPMEDVTDIGFRKMCKRFGAAMVYTEFVSADAIIRSIKSTLNKIVIDEDERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D ++ EAAK+ E + D IDIN GCP + VA +G L+ + PLL +
Sbjct: 68 VGIQIYGKDVDSMVEAAKIVERVNPDVIDINFGCPVKKVANKGAGSGMLR-NIPLLLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV PV+ K R+ D N V E A L+ G Q L +HGRT Q M TG A W
Sbjct: 127 REVVKAVHTPVTVKTRLGWDDNNLVITELAEQLQDCGIQALTIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT-----G 374
I V+ + IP+I NG++ ++D + + GV +M P LF+ G
Sbjct: 185 TLIGEVKNNPRIHIPIIGNGDVTSVSDAQERFNRYGVDAIMIGRATFGCPWLFSETAEVG 244
Query: 375 QTRPAWELASEYLDLVAQYPV-RLQYARGHVFNMCHHLLT------LPENSDVRLLVGKT 427
+ + + L+ + + V ++ RG + + HL +P+ +R+ + K
Sbjct: 245 INQLTLDDKIDVLEEMLRINVDKIDEYRG-ILHTRRHLAASPIFKGVPDFKQMRIAMLKA 303
Query: 428 NHIKDLRKAVDMLRERF 444
N + +L +++ RER
Sbjct: 304 NKMDELIGILEICRERL 320
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
G LAPM D +++ +R + +R+G+ + YT VSA I K ++ ++R
Sbjct: 7 DFGERPLFLAPMEDVTDIGFRKMCKRFGAAMVYTEFVSADAIIRSIKSTLNKIVIDEDER 66
Query: 135 PLIIQ 139
P+ IQ
Sbjct: 67 PVGIQ 71
>gi|153807028|ref|ZP_01959696.1| hypothetical protein BACCAC_01305 [Bacteroides caccae ATCC 43185]
gi|149130148|gb|EDM21358.1| TIM-barrel protein, nifR3 family [Bacteroides caccae ATCC 43185]
Length = 331
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 139/286 (48%), Gaps = 19/286 (6%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG +LAPM D ++ +RL+ +++G+ + YT VS+ I + L + E+RP
Sbjct: 8 LGKHPILLAPMEDVTDPAFRLMCKKFGADMVYTEFVSSDALIRAVSKTAQKLNISDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D++ + EAAK+ E D +DIN GCP + VA +G LQ + P + +
Sbjct: 68 VAIQIYGKDTETMVEAAKIVEQAQPDILDINFGCPVKRVAGKGAGAGMLQ-NIPQMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
++ AV++PV+ K R+ D N VE A L+ G L +HGRT Q M TG A W
Sbjct: 127 RAVVDAVKIPVTVKTRLGWDANNKIIVELAEQLQDCGIAALTIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I V+ + IP+I NG++ + C + GV VM + P +F
Sbjct: 185 TLIGEVKNNPRMHIPIIGNGDVTTPQRCKECFDRYGVDAVMIGRASFGRPWIFKEMKHYL 244
Query: 373 -TGQTRP--AWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLP 415
TG+ P ++E E L V L R + ++ HL P
Sbjct: 245 ETGEELPPLSFEWCMEVLRQEVIDSVNLLDERKGILHVRRHLAASP 290
Score = 43.1 bits (100), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LG +LAPM D ++ +RL+ +++G+ + YT VS+ I + L + E+RP
Sbjct: 8 LGKHPILLAPMEDVTDPAFRLMCKKFGADMVYTEFVSSDALIRAVSKTAQKLNISDEERP 67
Query: 136 LIIQ 139
+ IQ
Sbjct: 68 VAIQ 71
>gi|398344112|ref|ZP_10528815.1| tRNA-dihydrouridine synthase [Leptospira inadai serovar Lyme str.
10]
Length = 319
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 128/232 (55%), Gaps = 9/232 (3%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
F ++PM S+ P R ++RR+GS YT VS K +L E+RP+ Q
Sbjct: 13 FAMSPMAGISDSPTRTMARRFGSAFSYTEFVSTDNLAVGSKKAISLLRFREEERPVSFQI 72
Query: 211 CGNDSKNLTEAAK-LAEPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTN-LVSSLR 267
GN + + EAAK + E + D ID+N+GCP + V+ RG L+ P+ ++ +LR
Sbjct: 73 FGNTLEIIVEAAKRIRELNPDIIDLNMGCPTKNVSMRGSGVGLLRK--PIYAGKIIEALR 130
Query: 268 QAVQVPVSCKIRI-YQDVNKT-VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+++ +PV+ KIR+ + D ++ +E +R+LE +G Q ++VHGRT + +G A W+ I
Sbjct: 131 KSLDIPVTAKIRLGWDDTSRNYMEVSRILEESGVQAISVHGRTKEMG--YSGKADWDAIA 188
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTR 377
++ A +P+ NG++ +D GV GV+ ++ NP +F+G R
Sbjct: 189 DIKAARNVPIFGNGDVISYSDALHKKNTYGVDGVLIGRNSIGNPWVFSGIDR 240
Score = 42.4 bits (98), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
F ++PM S+ P R ++RR+GS YT VS K +L E+RP+ Q
Sbjct: 13 FAMSPMAGISDSPTRTMARRFGSAFSYTEFVSTDNLAVGSKKAISLLRFREEERPVSFQ 71
>gi|393782659|ref|ZP_10370842.1| hypothetical protein HMPREF1071_01710 [Bacteroides salyersiae
CL02T12C01]
gi|392672886|gb|EIY66352.1| hypothetical protein HMPREF1071_01710 [Bacteroides salyersiae
CL02T12C01]
Length = 326
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 98/323 (30%), Positives = 157/323 (48%), Gaps = 35/323 (10%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D ++ +RL+ +++G+ + YT VS+ I + L E+RP
Sbjct: 8 LGEHPIFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSSDALIRSVNKTTQKLTICDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D++ + AA++ E D +DIN GCP + VA +G LQ + P + +
Sbjct: 68 VAIQIYGKDTEAMVGAARIVEEARPDILDINFGCPVKKVAGKGAGAGMLQ-NIPKMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
++ AV++PV+ K R+ D + V+ A L+ G LA+HGRT Q M TG A W
Sbjct: 127 RAVVDAVKIPVTVKTRLGWDADHKIIVDLAEQLQDCGIAALAIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I V+ + IP+I NG+I + CL + GV +M G++ P +F
Sbjct: 185 TLIGEVKNNPRMHIPIIGNGDITSAIRAKECLDRYGVDAIMIGRGSIGRPWIFREVKHFL 244
Query: 373 -TGQTRP----AWELA---SEYLDLVAQYPVRLQYARGHVFNMCHHLLT------LPENS 418
TG P W L E L+ VA RL RG + ++ HL +P
Sbjct: 245 ETGNELPPETFEWYLNVLREEVLNSVA----RLDERRG-IIHIRRHLAATPLFKGIPNFR 299
Query: 419 DVRLLVGKTNHIKDLRKAVDMLR 441
+ R+ + +T +++L + D ++
Sbjct: 300 ETRIAMLRTESVEELFQIFDKIK 322
Score = 42.4 bits (98), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
LG LAPM D ++ +RL+ +++G+ + YT VS+ I + L E+R
Sbjct: 7 DLGEHPIFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSSDALIRSVNKTTQKLTICDEER 66
Query: 135 PLIIQ 139
P+ IQ
Sbjct: 67 PVAIQ 71
>gi|254423948|ref|ZP_05037666.1| putative TIM-barrel protein, nifR3 family [Synechococcus sp. PCC
7335]
gi|196191437|gb|EDX86401.1| putative TIM-barrel protein, nifR3 family [Synechococcus sp. PCC
7335]
Length = 362
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 145/277 (52%), Gaps = 27/277 (9%)
Query: 150 RFILAPMVDASELPWRLLSRRYG-SHLCYTPMVSAHQFIADKKLRQEILMST-PEDRPLI 207
R + +P+ ++ +R L RRY + YT MVSA + ++L ILM P++RP+
Sbjct: 53 RVLQSPLSGVTDKVFRRLVRRYAPQSMMYTEMVSAAELHHLQRL--PILMDIDPDERPIS 110
Query: 208 IQFCGNDSKNLTEAA-KLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSL 266
IQ L AA K + D IDIN+GCP + G+ L D +V ++
Sbjct: 111 IQLFDRRPDFLATAACKAVDQGADTIDINMGCPVNKITKNGGGSSLLRDPDTAVRIVDAV 170
Query: 267 RQAVQVPVSCKIRIY---QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+AV VPV+ K RI +++N V++AR +E AG Q+L +HGRT Q TG A WE
Sbjct: 171 CKAVDVPVTVKTRIGWSDEEIN-AVDFARRMESAGAQMLTLHGRTRAQG--YTGTARWEW 227
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQ 375
I V+ ALTIPVIANG+I + CL +T G+M + G L P L TG
Sbjct: 228 IARVKAALTIPVIANGDIFSIESALRCLVETKADGIMCSRGTLGYPFLVGEIDHFIKTGG 287
Query: 376 TRPAWEL------ASEYLDLVAQYP-VR-LQYARGHV 404
RPA + A E+L ++ +Y +R ++ AR H+
Sbjct: 288 IRPAPSVVERLTCAKEHLTMLWEYKGIRGIRQARKHM 324
>gi|387887271|ref|YP_006317570.1| putative TIM-barrel protein [Francisella noatunensis subsp.
orientalis str. Toba 04]
gi|386872087|gb|AFJ44094.1| putative TIM-barrel protein [Francisella noatunensis subsp.
orientalis str. Toba 04]
Length = 327
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 122/226 (53%), Gaps = 7/226 (3%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+LAPM + +R + + +G+ L YT MVS + E+L ++PL IQ
Sbjct: 15 VLAPMTGFCDSAFRTICKEHGAGLIYTEMVSNKAVVERNWETMEMLYMENSEKPLGIQIF 74
Query: 212 GNDSKNLTEAAK-LAE-PHCDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G D + A K +AE CD +DIN+GCP VAK+ GA L D + +++++ +
Sbjct: 75 GTDIDSFVGATKYIAENTECDFLDINMGCPMPKVAKKLQAGAALLKDVDRIHEILTAVVK 134
Query: 269 AVQVPVSCKIRI-YQDVN-KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV PV+ K+RI + D N +E A+ E AG + +HGRT +Q M TG A+W+ I
Sbjct: 135 AVYKPVTVKMRIGWDDENINAIEVAKACEDAGVSAITIHGRTREQ--MYTGKANWDIIRD 192
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
VRKA+ VI NG++ C +A + TGV VM + NP +F
Sbjct: 193 VRKAVDTVVIGNGDVFCPHSAKAMIEHTGVDAVMVGRASRGNPWIF 238
>gi|218283931|ref|ZP_03489799.1| hypothetical protein EUBIFOR_02395 [Eubacterium biforme DSM 3989]
gi|218215510|gb|EEC89048.1| hypothetical protein EUBIFOR_02395 [Eubacterium biforme DSM 3989]
Length = 321
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 115/225 (51%), Gaps = 6/225 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
++APM S + +R +++R+G+ L MVS D +++ + P+ Q
Sbjct: 14 VIAPMAGISNIAFRRIAKRFGAGLVCNEMVSDKALYYDSLKTKQMCAIDENEHPVSFQLF 73
Query: 212 GNDSKNLTEAAKL--AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G+D + AAK + CD ID N+GCP + G++L D LVS++ Q
Sbjct: 74 GHDIDTVVYAAKYLDTQTDCDIIDFNMGCPVNKVIKAQAGSFLMKDIDYAKELVSNIVQN 133
Query: 270 VQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
V PV+ K+R+ D VE A+ +E G +AVHGRT +Q M G A W +I V
Sbjct: 134 VSKPVTVKMRLGFDTYHINCVEMAKAMESVGVSAVAVHGRTRNQ--MYEGKADWSYIKQV 191
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
+ A++IPVI NG+++ + D + +TG VM G + NP L
Sbjct: 192 KDAVSIPVIGNGDVRSVEDFHRMMNETGCDAVMLGRGIVGNPFLI 236
>gi|303230948|ref|ZP_07317691.1| TIM-barrel protein, nifR3 family [Veillonella atypica
ACS-049-V-Sch6]
gi|302514330|gb|EFL56329.1| TIM-barrel protein, nifR3 family [Veillonella atypica
ACS-049-V-Sch6]
Length = 330
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 5/226 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ ILAPM S++ +RLL++ +G+ + T MVSA + E+L + P+ +Q
Sbjct: 15 KAILAPMAGVSDIAYRLLAKEHGASMVCTEMVSAMGIKYKNERTHELLRMEAVEHPVSMQ 74
Query: 210 FCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G+D + + AK+ A+ D +DIN+GCP G+ L L + + +
Sbjct: 75 IFGSDPEAIALGAKVVADAGADIVDINMGCPVKKVVSSGDGSALMKTPDLAARVAEAAVK 134
Query: 269 AVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV VPV+ K+RI D + V++A+ +E G +AVHGRT +Q M G A+W +I A
Sbjct: 135 AVDVPVTVKMRIGWDDDHINVVDFAKRIESTGVAAVAVHGRTREQ--MYMGRANWSYIKA 192
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
V+ +L+IPVI NG++ D + +TG VM G NP +F
Sbjct: 193 VKDSLSIPVIGNGDVWTPEDALRMMQETGCDAVMIGRGAQGNPWIF 238
>gi|428313427|ref|YP_007124404.1| TIM-barrel protein, nifR3 family [Microcoleus sp. PCC 7113]
gi|428255039|gb|AFZ20998.1| putative TIM-barrel protein, nifR3 family [Microcoleus sp. PCC
7113]
Length = 335
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 158/313 (50%), Gaps = 29/313 (9%)
Query: 150 RFILAPMVDASELPWRLLSRRYG-SHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
R + +P+ ++L +R L RRY + YT MV A K L +I+ P +RP+ I
Sbjct: 26 RVLQSPLSGVTDLVFRRLVRRYAPESMMYTEMVHASGLRYAKAL-PKIMEVDPNERPISI 84
Query: 209 QFCGNDSKNLTEAA-KLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
Q L EAA K E D +DIN+GCP + G+ L +V ++
Sbjct: 85 QLFDCRPDFLAEAAQKAVEEGADTVDINMGCPVNKITKNGGGSSLLRQPETAEAIVRAVV 144
Query: 268 QAVQVPVSCKIRI-YQDVNKTV-EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
QAV VPV+ K RI + D + E+A+ +E AG Q++ +HGRT Q G N G A WE I
Sbjct: 145 QAVCVPVTVKTRIGWSDGEINILEFAKRMEDAGAQMITIHGRTRAQ-GYN-GNAQWEWIG 202
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQ-- 375
V++ L+IPVIANG+I C+ CL QTG GVM + G L P L TGQ
Sbjct: 203 RVKEILSIPVIANGDIFCVEAAVNCLKQTGADGVMCSRGTLGYPFLVGEIDYFLKTGQLL 262
Query: 376 TRPA----WELASEYLDLVAQYPVR--LQYARGHVFNMCHHLLTLPENSDVRLLVGKTNH 429
T P E A E+L+ + QY ++ +R H M + P +++R G+
Sbjct: 263 TPPTPEERLECAREHLEALWQYKGDRGIRQSRKH---MTWYTKGFPGAAELR---GQLAV 316
Query: 430 IKDLRKAVDMLRE 442
I+ + + V+++ +
Sbjct: 317 IETVEQGVELIEQ 329
>gi|429760345|ref|ZP_19292825.1| TIM-barrel protein, nifR3 family [Veillonella atypica KON]
gi|429177679|gb|EKY18987.1| TIM-barrel protein, nifR3 family [Veillonella atypica KON]
Length = 330
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 152/310 (49%), Gaps = 19/310 (6%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ ILAPM S++ +RLL++ +G+ + T MVSA + E+L + P+ +Q
Sbjct: 15 KAILAPMAGVSDIAYRLLAKEHGASMVCTEMVSAMGIKYKNERTHELLRMEAVEHPVSMQ 74
Query: 210 FCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G++ + + AK+ A+ D +DIN+GCP G+ L L + + +
Sbjct: 75 IFGSNPEAIALGAKVVADAGADIVDINMGCPVKKVVSSGDGSALMKTPDLAARVAEAAVK 134
Query: 269 AVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV VPV+ K+RI D + V++A+ +E G +AVHGRT +Q M G A W +I A
Sbjct: 135 AVDVPVTVKMRIGWDDDHINVVDFAKRIESTGVAAVAVHGRTREQ--MYMGRADWSYIKA 192
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRP 378
V+ +L+IPVI NG++ D + +TG VM G NP +F TG+ RP
Sbjct: 193 VKDSLSIPVIGNGDVWTPEDALRMMQETGCDAVMIGRGAQGNPWIFERTNHYLTTGELRP 252
Query: 379 A------WELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKD 432
++ ++ +L+ +Y R + ++ +PE + R V + ++
Sbjct: 253 EPTYLERLDMLLKHFELLCRYKGAALGVREIRTHAGWYMRGMPEAAYWRNRVNTIHTVES 312
Query: 433 LRKAVDMLRE 442
+K + R+
Sbjct: 313 FKKELSTYRD 322
>gi|282879049|ref|ZP_06287809.1| TIM-barrel protein, nifR3 family [Prevotella buccalis ATCC 35310]
gi|281298783|gb|EFA91192.1| TIM-barrel protein, nifR3 family [Prevotella buccalis ATCC 35310]
Length = 329
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 156/324 (48%), Gaps = 27/324 (8%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG +LAPM D +++ +R L +R+G + YT VSA + + L + +RP
Sbjct: 8 LGVQPILLAPMEDVTDIGFRQLCKRFGVSMVYTEFVSAEALVRSIQASLNKLTISDAERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D +++ EAAK+ E H D IDIN GCP + VA +G GA + + PLL +
Sbjct: 68 VGIQIYGRDVESMVEAAKIVEQAHPDVIDINFGCPVKKVAGKG-AGAGMLRNIPLLLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV PV+ K R+ D N + E A L+ G Q L +HGRT Q M TG A W
Sbjct: 127 REVVKAVHTPVTVKTRLGWDENNLIITELAEQLQDCGIQALTIHGRTRSQ--MYTGNADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT------ 373
I V+ + IP+I NG+I + + + GV +M P +F
Sbjct: 185 TLIGEVKNNPRIHIPIIGNGDITSPQEAKQAFERFGVDAIMVGRAAFGQPWIFKEMRDYL 244
Query: 374 -GQTRPAWELASEYLDLVAQY----PVRLQYARGHVFNMCHHLLT------LPENSDVRL 422
G+ A ++ +D++ + R+ RG + + HL +P+ R+
Sbjct: 245 DGKPYDASLGINKKIDILKEQLHINVSRIDEYRG-ILHTRRHLAASPIFKGIPDFRQTRI 303
Query: 423 LVGKTNHIKDLRKAVDMLRERFID 446
+ + + + +L ++ R+R +D
Sbjct: 304 AMLRASTVVELENILEACRKRLVD 327
Score = 42.0 bits (97), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LG +LAPM D +++ +R L +R+G + YT VSA + + L + +RP
Sbjct: 8 LGVQPILLAPMEDVTDIGFRQLCKRFGVSMVYTEFVSAEALVRSIQASLNKLTISDAERP 67
Query: 136 LIIQ 139
+ IQ
Sbjct: 68 VGIQ 71
>gi|83593011|ref|YP_426763.1| dihydrouridine synthase TIM-barrel protein nifR3 [Rhodospirillum
rubrum ATCC 11170]
gi|386349743|ref|YP_006047991.1| dihydrouridine synthase TIM-barrel protein nifR3 [Rhodospirillum
rubrum F11]
gi|83575925|gb|ABC22476.1| Dihydrouridine synthase TIM-barrel protein nifR3 [Rhodospirillum
rubrum ATCC 11170]
gi|346718179|gb|AEO48194.1| dihydrouridine synthase TIM-barrel protein nifR3 [Rhodospirillum
rubrum F11]
Length = 362
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 123/236 (52%), Gaps = 10/236 (4%)
Query: 143 FPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKL----RQEILM 198
FP + P +LAPM ++ P+R L+ YG L +T MV++ + + ++ R
Sbjct: 7 FP-VSDPLIMLAPMAGVTDSPFRRLAHDYGCPLSWTEMVASRELLRERARGVDPRLGGGA 65
Query: 199 STPEDRPLIIQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
P +Q G D + EAA+ E + IDIN+GCP G G+ L D P
Sbjct: 66 EAGRAGPFAVQLAGCDPLIMAEAARRVEGAGAELIDINMGCPVRKVVGGLGGSALMRDLP 125
Query: 258 LLTNLVSSLRQAVQVPVSCKIRI-YQDVNK-TVEYARMLERAGCQLLAVHGRTVDQRGMN 315
L ++ ++ AV +PVS K+R+ + D ++ VE AR+ E AG L VHGRT Q M
Sbjct: 126 LAARILEAVVGAVTLPVSLKMRLGWDDASRNAVELARLAESAGISRLTVHGRTRAQ--MY 183
Query: 316 TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371
G A W I V++A+++PVIANG++ L++ LA TG GVM L P L
Sbjct: 184 DGRADWPAIGLVKRAVSLPVIANGDVTNLSEAREILAVTGADGVMIGRAALGAPWL 239
>gi|291526763|emb|CBK92349.1| tRNA-U20-dihydrouridine synthase [Eubacterium rectale M104/1]
Length = 323
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 134/268 (50%), Gaps = 21/268 (7%)
Query: 128 MSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI 187
M + R L I P IL PM ++LP+RLL + G+ L MVSA +
Sbjct: 1 MDIHQIRKLQIGSVTLPN----NLILGPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAIL 56
Query: 188 ADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRG 246
K + +L ++P+ +Q G+D + + + AK E D +DIN+GCP
Sbjct: 57 YKNKNTESLLSIDEREKPVSLQMFGSDPQIMAQIAKQIEERPFDILDINMGCPVPKIVNN 116
Query: 247 HYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD---VNKTVEYARMLERAGCQLLA 303
G+ L + L ++ S+ +A+ PV+ KIR D VN VE A + E +G +A
Sbjct: 117 GEGSALMKNPILAGQIIESIVKAIDKPVTVKIRKGFDDEHVN-AVELAHVAEESGASAVA 175
Query: 304 VHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363
VHGRT +Q +G A W+ I V++A++IPVI NG++ C DV QTG G M A
Sbjct: 176 VHGRTREQ--YYSGKADWDIIRQVKEAVSIPVIGNGDLLCAEDVIKMQEQTGCDGFMIAR 233
Query: 364 GNLYNPALF--------TG--QTRPAWE 381
G NP +F TG Q +P++E
Sbjct: 234 GAQGNPWIFSQILHYFETGEHQEKPSFE 261
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 101/244 (41%), Gaps = 46/244 (18%)
Query: 75 QLGS----PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
Q+GS IL PM ++LP+RLL + G+ L MVSA + K + +L
Sbjct: 10 QIGSVTLPNNLILGPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAILYKNKNTESLLSID 69
Query: 131 PEDRPLIIQRTIFPRLGSPRFILAPMVDA-SELPWRLLSRRYGSHLCYTPMV----SAHQ 185
++P+ +Q GS I+A + E P+ +L G C P +
Sbjct: 70 EREKPVSLQ-----MFGSDPQIMAQIAKQIEERPFDILDINMG---CPVPKIVNNGEGSA 121
Query: 186 FIADKKLRQEILMSTPE--DRPLIIQF-CGNDSK--NLTEAAKLAEPHCDGIDINIGCPQ 240
+ + L +I+ S + D+P+ ++ G D + N E A +AE
Sbjct: 122 LMKNPILAGQIIESIVKAIDKPVTVKIRKGFDDEHVNAVELAHVAEE---------SGAS 172
Query: 241 MVAKRG-----HYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLE 295
VA G +Y + DW +++ +++AV +PV D+ + +M E
Sbjct: 173 AVAVHGRTREQYYSG--KADW----DIIRQVKEAVSIPVIGN----GDLLCAEDVIKMQE 222
Query: 296 RAGC 299
+ GC
Sbjct: 223 QTGC 226
>gi|302876583|ref|YP_003845216.1| nifR3 family TIM-barrel protein [Clostridium cellulovorans 743B]
gi|307687258|ref|ZP_07629704.1| TIM-barrel protein, nifR3 family [Clostridium cellulovorans 743B]
gi|302579440|gb|ADL53452.1| TIM-barrel protein, nifR3 family [Clostridium cellulovorans 743B]
Length = 321
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 146/297 (49%), Gaps = 26/297 (8%)
Query: 145 RLGSPRF----ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 200
++G+ F LAPM ++ P+R L G L YT MVSA + + +L
Sbjct: 2 KIGNLEFKNNVFLAPMAGVTDSPFRTLCLEQGCGLVYTEMVSAKGLFYGSENTEALLKVI 61
Query: 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDG--IDINIGCPQ-MVAKRGHYGAYLQDDWP 257
E+RP+ +Q G D + +A + + + ID+N+GCP + K G G+ L +
Sbjct: 62 DEERPVAVQIFGRDPYIMAKACEYFDKKDEFCIIDVNMGCPAPKIVKNGE-GSALMKEPE 120
Query: 258 LLTNLVSSLRQAVQVPVSCKIR--IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
L +V +L+ PV+ K R +D VE+A+++E AG +AVHGRT Q M
Sbjct: 121 LAYEIVKTLKNTTSKPVTVKFRKGFDEDNINAVEFAKVIEEAGADAIAVHGRTRAQ--MY 178
Query: 316 TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375
G A W I V+KA+TIPVI NG++ D + + + G+M A G+ NP LF
Sbjct: 179 QGKADWNIIAQVKKAVTIPVIGNGDVFSHEDAQNLIHISNCDGIMVARGSQGNPWLF--- 235
Query: 376 TRPAWELASEYLDLVAQYPVRLQYARGHVFNMC--HHLLTLPENSDVRLLVGKTNHI 430
+ +L++E + +YP + +MC H+ L L N +V+ + HI
Sbjct: 236 NQIKQKLSNEEI----KYPTGAEK-----IDMCIRHYQLELMSNEEVKAVREMRKHI 283
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 39/218 (17%)
Query: 75 QLGSPRF----ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
++G+ F LAPM ++ P+R L G L YT MVSA + + +L
Sbjct: 2 KIGNLEFKNNVFLAPMAGVTDSPFRTLCLEQGCGLVYTEMVSAKGLFYGSENTEALLKVI 61
Query: 131 PEDRPLIIQRTIFPRLGSPRFILAPMVD--ASELPWRLLSRRYGSHLCYTPMV----SAH 184
E+RP+ +Q IF G +I+A + + + ++ G C P +
Sbjct: 62 DEERPVAVQ--IF---GRDPYIMAKACEYFDKKDEFCIIDVNMG---CPAPKIVKNGEGS 113
Query: 185 QFIADKKLRQEIL--MSTPEDRPLIIQF---CGNDSKNLTEAAKLAEPHCDGIDINIGCP 239
+ + +L EI+ + +P+ ++F D+ N E AK+ E G D
Sbjct: 114 ALMKEPELAYEIVKTLKNTTSKPVTVKFRKGFDEDNINAVEFAKVIEEA--GAD------ 165
Query: 240 QMVAKRGHYGAYL---QDDWPLLTNLVSSLRQAVQVPV 274
+A G A + + DW N+++ +++AV +PV
Sbjct: 166 -AIAVHGRTRAQMYQGKADW----NIIAQVKKAVTIPV 198
>gi|51246252|ref|YP_066136.1| hypothetical protein DP2400 [Desulfotalea psychrophila LSv54]
gi|50877289|emb|CAG37129.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 354
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 131/268 (48%), Gaps = 13/268 (4%)
Query: 120 KKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWR-LLSRRYGSHLCYT 178
K + EI M +QR RL +P LAPMV S R L++ G L YT
Sbjct: 18 KPFQNEICMKLT-----FLQRDGEGRLAAPPLSLAPMVGLSHSALRSLIADLGGCGLFYT 72
Query: 179 PMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAA-KLAEPHCDGIDINIG 237
M++A + + L +TP +RPLI Q D K + A K+ DG+DIN+G
Sbjct: 73 EMLAARRLPHENPAVSSYLHTTPCERPLIYQLFIADVKYVAPALDKIHRLGGDGVDINLG 132
Query: 238 CPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKT---VEYARML 294
CP +RG GA L +DW + ++VSS R+ + +S KIR+ V K +++ +ML
Sbjct: 133 CPAPSVRRGGAGAALAEDWDRVRDIVSSARRHTDLTLSAKIRVGH-VGKEAHLLDFCKML 191
Query: 295 ERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQT 354
E G LLAVH R ++ W+ + + + L IP+ ANG I + D CL +
Sbjct: 192 EAEGVDLLAVHARYHGEKFCRK--PRWQLLAPICEQLDIPIFANGGIFSVDDARRCLELS 249
Query: 355 GVAGVMTAEGNLYNPALFTGQTRPAWEL 382
G AG+M G + P LF R + L
Sbjct: 250 GAAGLMLGRGAVERPWLFNEIAREVYGL 277
>gi|320353935|ref|YP_004195274.1| tRNA-U20-dihydrouridine synthase [Desulfobulbus propionicus DSM
2032]
gi|320122437|gb|ADW17983.1| tRNA-U20-dihydrouridine synthase [Desulfobulbus propionicus DSM
2032]
Length = 329
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 137/253 (54%), Gaps = 14/253 (5%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
+LAP+ ++LP+RLL R G+ LC++ M+S H + ++K E+L + PE+RP +Q
Sbjct: 23 LVLAPLAGYTDLPFRLLCRENGAALCFSEMISCHGLVYEQKNTLELLRTVPEERPFAVQL 82
Query: 211 CGNDSKNLTEA-AKLAEPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G++ + + A A ++ D IDIN+GCP + V K+G GA L D ++ ++
Sbjct: 83 FGSEPELMARATAMVSSGPVDLIDINMGCPVRKVIKKG-CGAALMKDPQRAEAIIRAVCA 141
Query: 269 AVQVPVSCKIR---IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+PV+ K R + VN ++A M E AG + +HGRT Q G G A I
Sbjct: 142 QTSLPVTVKFRSGWTGESVNAP-QFAAMAEAAGASAVTIHGRTWVQ-GFG-GRADRRVIR 198
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPA-----W 380
AV+ A++IPVI NG+I AD +A+TG GVM G L NP LF+ RPA
Sbjct: 199 AVKDAVSIPVIGNGDILTRADALEMMAETGCDGVMVGRGALGNPWLFSPSGRPATLANRL 258
Query: 381 ELASEYLDLVAQY 393
+ YL L Q+
Sbjct: 259 PVIERYLQLAEQF 271
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+LAP+ ++LP+RLL R G+ LC++ M+S H + ++K E+L + PE+RP +Q
Sbjct: 23 LVLAPLAGYTDLPFRLLCRENGAALCFSEMISCHGLVYEQKNTLELLRTVPEERPFAVQ 81
>gi|291526252|emb|CBK91839.1| tRNA-U20-dihydrouridine synthase [Eubacterium rectale DSM 17629]
Length = 328
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 91/268 (33%), Positives = 135/268 (50%), Gaps = 21/268 (7%)
Query: 128 MSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI 187
M + R L I P IL PM ++LP+RLL + G+ L MVSA +
Sbjct: 1 MDIHQIRKLQIGSVTLPN----NLILGPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAIL 56
Query: 188 ADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRG 246
K + +L ++P+ +Q G+D + + + AK + E D +DIN+GCP
Sbjct: 57 YKNKNTESLLSIDEREKPVSLQMFGSDPQIMAQIAKQIEERPFDILDINMGCPVPKIVNN 116
Query: 247 HYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD---VNKTVEYARMLERAGCQLLA 303
G+ L + L ++ S+ +A+ PV+ KIR D VN VE A + E +G +A
Sbjct: 117 GEGSALMKNPILAGRIIESIVKAIDKPVTVKIRKGFDDEHVN-AVELAHVAEESGASAVA 175
Query: 304 VHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363
VHGRT +Q +G A W+ I V++A++IPVI NG++ C DV QTG G M A
Sbjct: 176 VHGRTREQ--YYSGKADWDIIRQVKEAVSIPVIGNGDLLCAEDVIKMQEQTGCDGFMIAR 233
Query: 364 GNLYNPALF--------TG--QTRPAWE 381
G NP +F TG Q +P++E
Sbjct: 234 GAQGNPWIFSQILHYFETGEHQEKPSFE 261
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 100/244 (40%), Gaps = 46/244 (18%)
Query: 75 QLGS----PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
Q+GS IL PM ++LP+RLL + G+ L MVSA + K + +L
Sbjct: 10 QIGSVTLPNNLILGPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAILYKNKNTESLLSID 69
Query: 131 PEDRPLIIQRTIFPRLGSPRFILAPMVDA-SELPWRLLSRRYGSHLCYTPMV----SAHQ 185
++P+ +Q GS I+A + E P+ +L G C P +
Sbjct: 70 EREKPVSLQ-----MFGSDPQIMAQIAKQIEERPFDILDINMG---CPVPKIVNNGEGSA 121
Query: 186 FIADKKLRQEILMSTPE--DRPLIIQF-CGNDSK--NLTEAAKLAEPHCDGIDINIGCPQ 240
+ + L I+ S + D+P+ ++ G D + N E A +AE
Sbjct: 122 LMKNPILAGRIIESIVKAIDKPVTVKIRKGFDDEHVNAVELAHVAEE---------SGAS 172
Query: 241 MVAKRG-----HYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLE 295
VA G +Y + DW +++ +++AV +PV D+ + +M E
Sbjct: 173 AVAVHGRTREQYYSG--KADW----DIIRQVKEAVSIPVIGN----GDLLCAEDVIKMQE 222
Query: 296 RAGC 299
+ GC
Sbjct: 223 QTGC 226
>gi|423219990|ref|ZP_17206486.1| hypothetical protein HMPREF1061_03259 [Bacteroides caccae
CL03T12C61]
gi|392624253|gb|EIY18346.1| hypothetical protein HMPREF1061_03259 [Bacteroides caccae
CL03T12C61]
Length = 331
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 139/286 (48%), Gaps = 19/286 (6%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG +LAPM D ++ +RL+ +++G+ + YT VS+ I + L + E+RP
Sbjct: 8 LGKHPILLAPMEDVTDPAFRLMCKKFGADMVYTEFVSSDALIRAVSKTAQKLNISDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D++ + EAAK+ E D +DIN GCP + VA +G LQ + P + +
Sbjct: 68 VAIQIYGKDTETMVEAAKIVEQAQPDILDINFGCPVKRVAGKGAGAGMLQ-NIPQMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
++ AV++PV+ K R+ D N VE A L+ G L +HGRT Q M TG A W
Sbjct: 127 RAVVDAVKIPVTVKTRLGWDANNKIIVELAEQLQDCGIAALTIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I V+ + IP+I NG++ + C + GV VM + P +F
Sbjct: 185 TLIGEVKNNPRMHIPIIGNGDVTTPQRCKECFDRYGVDAVMIGRASFGRPWIFKEMKHYL 244
Query: 373 -TGQTRP--AWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLP 415
TG+ P ++E E L V L R + ++ HL P
Sbjct: 245 ETGEELPPLSFEWCMEVLRQEVIDSVNLLDERRGILHVRRHLAASP 290
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LG +LAPM D ++ +RL+ +++G+ + YT VS+ I + L + E+RP
Sbjct: 8 LGKHPILLAPMEDVTDPAFRLMCKKFGADMVYTEFVSSDALIRAVSKTAQKLNISDEERP 67
Query: 136 LIIQ 139
+ IQ
Sbjct: 68 VAIQ 71
>gi|390338393|ref|XP_003724767.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
1 [Strongylocentrotus purpuratus]
Length = 540
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 132/264 (50%), Gaps = 22/264 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS---------- 199
+ ILAPMV LP RLL+ YG+ + Y + + + ++ +L +
Sbjct: 10 KVILAPMVRIGTLPTRLLALEYGADIVYCQELIDFKMLTCRRHVNRVLDTVDYISKDDVV 69
Query: 200 -----TPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
+ E L+ Q D++ AK+ E GIDIN+GCP+ + +G GA L
Sbjct: 70 IFRTCSKETDRLVFQMGTADAQRALRVAKMVEKDVSGIDINMGCPKDFSLKGGMGAALLQ 129
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
+ ++++L Q V++PV+CKIRI + T+ A+M+E+ G LAVHGR ++R
Sbjct: 130 KPDTIKEILTTLVQGVKIPVTCKIRILPKLEDTIALAKMIEQTGVAALAVHGRLTEERPR 189
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ + I AV +++IP+I NG I+ AD+E TG + VM A +NP+
Sbjct: 190 HP--VHCDAIKAVADSISIPLITNGGSQDIIKSYADIERFREMTGASSVMIAREAQWNPS 247
Query: 371 LFTGQTR-PAWELASEYLDLVAQY 393
+F + + P ++A Y+ Y
Sbjct: 248 IFRKEGKLPNHDVAKRYIQYSVDY 271
>gi|282850019|ref|ZP_06259401.1| TIM-barrel protein, nifR3 family [Veillonella parvula ATCC 17745]
gi|282580208|gb|EFB85609.1| TIM-barrel protein, nifR3 family [Veillonella parvula ATCC 17745]
Length = 328
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 139/259 (53%), Gaps = 19/259 (7%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM S++ +RLL++++G+ L T MVSA + E+L +RP+ +Q
Sbjct: 18 ILAPMAGVSDIAYRLLAKKHGAALVCTEMVSAMGIKYKNERTHELLRIEEAERPVSMQIF 77
Query: 212 GNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G++ + + AK+ A+ D +DIN+GCP G+ L + L + + +AV
Sbjct: 78 GSNPEAIALGAKVVADAGADIVDINMGCPVKKVVTSGDGSALMKNPDLAARVAEAAVEAV 137
Query: 271 QVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
VPV+ K+RI D + V++A+ +E G +AVHGRT +Q M +G A W +I AV+
Sbjct: 138 DVPVTVKMRIGWDSDSINVVDFAKRIESTGVAAIAVHGRTKEQ--MYSGHADWSYIKAVK 195
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRPA- 379
+A+++PV+ NG+I D + L +TG VM G NP +F TG+ PA
Sbjct: 196 EAVSVPVLGNGDIVEPEDAKQMLDETGCDAVMIGRGAQGNPWIFDRIHHYLATGEVLPAP 255
Query: 380 -----WELASEYLDLVAQY 393
++ ++ DL+ QY
Sbjct: 256 TDIERLDMLLKHFDLLCQY 274
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 75 QLGSPRF----ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
Q+G+ + ILAPM S++ +RLL++++G+ L T MVSA + E+L
Sbjct: 7 QIGAVKIDGQAILAPMAGVSDIAYRLLAKKHGAALVCTEMVSAMGIKYKNERTHELLRIE 66
Query: 131 PEDRPLIIQ 139
+RP+ +Q
Sbjct: 67 EAERPVSMQ 75
>gi|291520200|emb|CBK75421.1| tRNA-U20-dihydrouridine synthase [Butyrivibrio fibrisolvens 16/4]
Length = 327
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 121/226 (53%), Gaps = 7/226 (3%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
ILAPM ++LP+RLL + G+ LC MVSA + + K + +L +RP+ +Q
Sbjct: 16 LILAPMAGVTDLPFRLLCKEQGAALCCMEMVSAKGIMYNNKNTESLLTVDERERPVSLQL 75
Query: 211 CGNDSKNLTE-AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G+D + + AAK+ + D +DIN+GCP G+ L + L ++ S+ +A
Sbjct: 76 FGSDPEIMGAMAAKIEHRNFDILDINMGCPVPKVVNNGDGSALMKNPVLAGKIIESMVKA 135
Query: 270 VQVPVSCKIRIYQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
++ PV+ KIR D VN VE A + + +G +AVHGRT +Q +G A W I
Sbjct: 136 IEKPVTVKIRKGFDEEHVN-AVEMAHVAQESGAAAVAVHGRTREQ--FYSGKADWSIIAD 192
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
V+ A++IPVI NG+I DV A QT G M G NP +F
Sbjct: 193 VKNAVSIPVIGNGDILDAKDVIALKEQTNCDGFMIGRGAQGNPWIF 238
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 81 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
ILAPM ++LP+RLL + G+ LC MVSA + + K + +L +RP+ +Q
Sbjct: 16 LILAPMAGVTDLPFRLLCKEQGAALCCMEMVSAKGIMYNNKNTESLLTVDERERPVSLQ 74
>gi|117926944|ref|YP_867561.1| nifR3 family TIM-barrel protein [Magnetococcus marinus MC-1]
gi|117610700|gb|ABK46155.1| tRNA-U20-dihydrouridine synthase [Magnetococcus marinus MC-1]
Length = 336
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 146/271 (53%), Gaps = 13/271 (4%)
Query: 147 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 206
G P +LAPM ++ P+RL++RRYG+ L + M+++ I + I + E+ PL
Sbjct: 18 GPPPLVLAPMAGVTDAPFRLIARRYGADLTVSEMIASQAMIRNTSKSLLIGTAHEEEHPL 77
Query: 207 IIQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
+Q G+D + + EAA++ + + IDIN+GCP +G GA L D L+ ++++
Sbjct: 78 SVQIAGSDPQVMAEAARMNVDRGAEIIDINMGCPVKKVVKGQAGAALMRDEALVARILAA 137
Query: 266 LRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ AV VPV+ KIR+ D + ++ E+ G ++L VHGRT Q M G A W+
Sbjct: 138 VVAAVPVPVTLKIRLGWDKSNLNGARIGQIAEQQGVRMLTVHGRTRMQ--MYRGHADWQC 195
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQ 375
I ++++A+TIPV+ NG++ + + +GV G+M + P LF +GQ
Sbjct: 196 IASIKQAVTIPVVGNGDLHTPQEAKEKWLLSGVDGLMIGRAAMGCPWLFGQIAHYLRSGQ 255
Query: 376 TRPAWELASEYLDLVAQYPVRLQYARGHVFN 406
+P +LA ++ ++ + + + H+ N
Sbjct: 256 EKPPPDLAEQHALVLEHFDRLIDFYGPHIGN 286
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 77 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 136
G P +LAPM ++ P+RL++RRYG+ L + M+++ I + I + E+ PL
Sbjct: 18 GPPPLVLAPMAGVTDAPFRLIARRYGADLTVSEMIASQAMIRNTSKSLLIGTAHEEEHPL 77
Query: 137 IIQ 139
+Q
Sbjct: 78 SVQ 80
>gi|294793386|ref|ZP_06758531.1| tRNA-dihydrouridine synthase [Veillonella sp. 6_1_27]
gi|294455817|gb|EFG24182.1| tRNA-dihydrouridine synthase [Veillonella sp. 6_1_27]
Length = 328
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 139/259 (53%), Gaps = 19/259 (7%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM S++ +RLL++++G+ L T MVSA + E+L +RP+ +Q
Sbjct: 18 ILAPMAGVSDIAYRLLAKKHGAALVCTEMVSAMGIKYKNERTHELLRIEEAERPVSMQIF 77
Query: 212 GNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G++ + + AK+ A+ D +DIN+GCP G+ L + L + + +AV
Sbjct: 78 GSNPEAIALGAKVVADAGADIVDINMGCPVKKVVTSGDGSALMKNPDLAARVAEAAVEAV 137
Query: 271 QVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
VPV+ K+RI D + V++A+ +E G +AVHGRT +Q M +G A W +I AV+
Sbjct: 138 DVPVTVKMRIGWDSDSINVVDFAKRIESTGVAAIAVHGRTKEQ--MYSGHADWSYIKAVK 195
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRPA- 379
+A+++PV+ NG+I D + L +TG VM G NP +F TG+ PA
Sbjct: 196 EAVSVPVLGNGDIVEPEDAKQMLDETGCDAVMIGRGAQGNPWIFDRIHHYLATGEVLPAP 255
Query: 380 -----WELASEYLDLVAQY 393
++ ++ DL+ QY
Sbjct: 256 TDIERLDMLLKHFDLLCQY 274
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 75 QLGSPRF----ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 130
Q+G+ + ILAPM S++ +RLL++++G+ L T MVSA + E+L
Sbjct: 7 QIGAVKIDGQAILAPMAGVSDIAYRLLAKKHGAALVCTEMVSAMGIKYKNERTHELLRIE 66
Query: 131 PEDRPLIIQ 139
+RP+ +Q
Sbjct: 67 EAERPVSMQ 75
>gi|434391433|ref|YP_007126380.1| TIM-barrel protein, nifR3 family [Gloeocapsa sp. PCC 7428]
gi|428263274|gb|AFZ29220.1| TIM-barrel protein, nifR3 family [Gloeocapsa sp. PCC 7428]
Length = 351
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 129/241 (53%), Gaps = 15/241 (6%)
Query: 150 RFILAPMVDASELPWRLLSRRYG-SHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
R + +P+ ++L +R L RRY + YT MV+A K+L +I+ P +RP+ I
Sbjct: 26 RVLQSPLSGVTDLVFRRLVRRYAPESMMYTEMVNATGLHYVKQL-PKIMEVDPNERPISI 84
Query: 209 QFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
Q L EAA +A E D +DIN+GCP + G+ L + +V S+
Sbjct: 85 QLFDCRPDFLAEAAVMAVEEGADTVDINMGCPVNKITKNGGGSSLLRQPEVAEEIVRSVV 144
Query: 268 QAVQVPVSCKIRI-YQDVNKTV-EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
+AV VPV+ K RI + D T+ ++A+ +E AG Q++ VHGRT Q G N G A WE I
Sbjct: 145 KAVDVPVTVKTRIGWTDKEITILDFAKRMEDAGAQMITVHGRTRAQ-GYN-GSARWEWIA 202
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTR 377
V++ L+IPVIANG+I + CL QTG GVM + G L P L TGQ
Sbjct: 203 RVKEVLSIPVIANGDIFSVEAAVRCLEQTGADGVMCSRGTLGYPFLVGEIDYFLKTGQEL 262
Query: 378 P 378
P
Sbjct: 263 P 263
>gi|390338391|ref|XP_784269.3| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like isoform
3 [Strongylocentrotus purpuratus]
Length = 540
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/264 (30%), Positives = 132/264 (50%), Gaps = 22/264 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS---------- 199
+ ILAPMV LP RLL+ YG+ + Y + + + ++ +L +
Sbjct: 10 KVILAPMVRIGTLPTRLLALEYGADIVYCQELIDFKMLTCRRHVNRVLDTVDYISKDDVV 69
Query: 200 -----TPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
+ E L+ Q D++ AK+ E GIDIN+GCP+ + +G GA L
Sbjct: 70 IFRTCSKETDRLVFQMGTADAQRALRVAKMVEKDVSGIDINMGCPKDFSLKGGMGAALLQ 129
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
+ ++++L Q V++PV+CKIRI + T+ A+M+E+ G LAVHGR ++R
Sbjct: 130 KPDTIKEILTTLVQGVKIPVTCKIRILPKLEDTIALAKMIEQTGVAALAVHGRLTEERPR 189
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ + I AV +++IP+I NG I+ AD+E TG + VM A +NP+
Sbjct: 190 HP--VHCDAIKAVADSISIPLITNGGSQDIIKSYADIERFREMTGASSVMIAREAQWNPS 247
Query: 371 LFTGQTR-PAWELASEYLDLVAQY 393
+F + + P ++A Y+ Y
Sbjct: 248 IFRKEGKLPNHDVAKRYIQYSVDY 271
>gi|291551191|emb|CBL27453.1| tRNA-U20-dihydrouridine synthase [Ruminococcus torques L2-14]
Length = 321
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/228 (37%), Positives = 133/228 (58%), Gaps = 7/228 (3%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R+IL PM ++LP+R+L + G+ L MVSA + + K + +L P+++P+ +Q
Sbjct: 15 RYILGPMAGVTDLPFRVLCKEQGAGLLCMEMVSAKAILYNNKNTESLLEIHPDEQPVSLQ 74
Query: 210 FCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
F G+D K ++E AK E D +DIN+GCP R G+ L + L+ +VS++ +
Sbjct: 75 FFGSDPKIMSEMAKRVEERPFDIMDINMGCPVPKVVRNGEGSALMKNPKLVYEIVSAMVK 134
Query: 269 AVQVPVSCKIRIYQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
A+ PV+ KIR D VN VE A+++E AG +AVHGRT +Q +G A W+ I
Sbjct: 135 AIDKPVTVKIRKGFDDSCVN-AVEIAKIIEEAGAAAVAVHGRTREQ--YYSGQADWDIIR 191
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373
V++A++IPVI NG++ E + QTG G+M A G NP +F+
Sbjct: 192 QVKEAVSIPVIGNGDVTSPQKAEELVKQTGCDGIMIARGAQGNPWIFS 239
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 102/232 (43%), Gaps = 26/232 (11%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
R+IL PM ++LP+R+L + G+ L MVSA + + K + +L P+++P+ +Q
Sbjct: 15 RYILGPMAGVTDLPFRVLCKEQGAGLLCMEMVSAKAILYNNKNTESLLEIHPDEQPVSLQ 74
Query: 140 RTIFPRLGSPRFILAPMVD-ASELPWRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQ 194
GS I++ M E P+ ++ G C P V + + KL
Sbjct: 75 -----FFGSDPKIMSEMAKRVEERPFDIMDINMG---CPVPKVVRNGEGSALMKNPKLVY 126
Query: 195 EIL--MSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 252
EI+ M D+P+ ++ + A ++A+ + + ++ + G
Sbjct: 127 EIVSAMVKAIDKPVTVKIRKGFDDSCVNAVEIAKIIEEAGAAAVAVHGRTREQYYSG--- 183
Query: 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304
Q DW +++ +++AV +PV DV + ++++ GC + +
Sbjct: 184 QADW----DIIRQVKEAVSIPVIGN----GDVTSPQKAEELVKQTGCDGIMI 227
>gi|116053000|ref|YP_793318.1| hypothetical protein PA14_64180 [Pseudomonas aeruginosa UCBPP-PA14]
gi|296391685|ref|ZP_06881160.1| hypothetical protein PaerPAb_26189 [Pseudomonas aeruginosa PAb1]
gi|355642965|ref|ZP_09052974.1| tRNA-dihydrouridine synthase B [Pseudomonas sp. 2_1_26]
gi|416880594|ref|ZP_11921337.1| tRNA-dihydrouridine synthase B [Pseudomonas aeruginosa 152504]
gi|421177106|ref|ZP_15634763.1| hypothetical protein PACI27_5321 [Pseudomonas aeruginosa CI27]
gi|115588221|gb|ABJ14236.1| putative tRNA-dihydrouridine synthase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|334836372|gb|EGM15188.1| tRNA-dihydrouridine synthase B [Pseudomonas aeruginosa 152504]
gi|354829965|gb|EHF14024.1| tRNA-dihydrouridine synthase B [Pseudomonas sp. 2_1_26]
gi|404530194|gb|EKA40207.1| hypothetical protein PACI27_5321 [Pseudomonas aeruginosa CI27]
Length = 332
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 5/226 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R ILAPM ++ P+R L RR G+ + + MV++ + + + + L+ ED P +Q
Sbjct: 14 RLILAPMAGVTDRPFRQLCRRLGAGMVVSEMVTSDVRLWNSRKSRLRLIHDGEDEPRSVQ 73
Query: 210 FCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G D L EAA+ E IDIN+GCP G+ L D L+ ++ ++ +
Sbjct: 74 IAGGDPAMLAEAAQRNVELGAQIIDINMGCPAKKVCNKAAGSALLRDEALVAEILDAVVR 133
Query: 269 AVQVPVSCKIRIY--QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV VPV+ KIR +D V AR+ E+AG Q LAVHGRT + + TG A +E I A
Sbjct: 134 AVDVPVTLKIRTGWDRDNRNGVSVARLAEQAGIQALAVHGRT--RADLYTGEAEYETIAA 191
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
+++A++IPV ANG+I + QTGV ++ P +F
Sbjct: 192 IKQAVSIPVFANGDIDSPEKARKVIEQTGVDALLIGRAAQGRPWIF 237
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 111/259 (42%), Gaps = 32/259 (12%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
R ILAPM ++ P+R L RR G+ + + MV++ + + + + L+ ED P
Sbjct: 14 RLILAPMAGVTDRPFRQLCRRLGAGMVVSEMVTSDVRLWNSRKSRLRLIHDGEDEP---- 69
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYG---SHLCYTPMVSAHQFIADKKLRQEI 196
R++ G P + EL +++ G +C SA + D+ L EI
Sbjct: 70 RSVQIAGGDPAMLAEAAQRNVELGAQIIDINMGCPAKKVCNKAAGSA--LLRDEALVAEI 127
Query: 197 LMSTPE--DRPLIIQF---CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAY 251
L + D P+ ++ D++N A+LAE GI Q +A G A
Sbjct: 128 LDAVVRAVDVPVTLKIRTGWDRDNRNGVSVARLAEQA--GI-------QALAVHGRTRAD 178
Query: 252 LQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLL----AVHGR 307
L +++++QAV +PV D++ + +++E+ G L A GR
Sbjct: 179 LYTGEAEYET-IAAIKQAVSIPVFAN----GDIDSPEKARKVIEQTGVDALLIGRAAQGR 233
Query: 308 TVDQRGMNTGLASWEHITA 326
R ++ L + EH+ A
Sbjct: 234 PWIFREIDHYLRTGEHLPA 252
>gi|383124673|ref|ZP_09945336.1| nifR3 family putative TIM-barrel protein [Bacteroides sp. 1_1_6]
gi|251841170|gb|EES69251.1| nifR3 family putative TIM-barrel protein [Bacteroides sp. 1_1_6]
Length = 330
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/286 (31%), Positives = 140/286 (48%), Gaps = 19/286 (6%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG +LAPM D ++ +RL+ +++G+ + YT VS+ I + L + E+RP
Sbjct: 8 LGEHPILLAPMEDVTDPAFRLMCKKFGADMVYTEFVSSDALIRAVSKTAQKLSISDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D++ + EAAK+ E D +DIN GCP + VA +G LQ + P + +
Sbjct: 68 VAIQIYGKDTETMVEAAKIVEQAQPDILDINFGCPVKRVAGKGAGAGMLQ-NIPKMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
++ AV++PV+ K R+ D N V+ A L+ G L +HGRT Q M TG A W
Sbjct: 127 RAIVDAVKIPVTVKTRLGWDANNKIIVDLAEQLQDCGIAALTIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVR--KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I V+ + + IP+I NG++ + C + GV VM + P +F
Sbjct: 185 TLIEEVKNNQRMHIPIIGNGDVTTPQRCKECFDRYGVDAVMIGRASFGRPWIFKEVKHYL 244
Query: 373 -TGQTRP--AWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLP 415
TG+ P ++E E L V L R + ++ HL P
Sbjct: 245 ETGEELPPLSFEWCMEVLRQEVIDSVNLLDERRGILHVRRHLAASP 290
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LG +LAPM D ++ +RL+ +++G+ + YT VS+ I + L + E+RP
Sbjct: 8 LGEHPILLAPMEDVTDPAFRLMCKKFGADMVYTEFVSSDALIRAVSKTAQKLSISDEERP 67
Query: 136 LIIQ 139
+ IQ
Sbjct: 68 VAIQ 71
>gi|433451882|ref|ZP_20412859.1| TIM-barrel , nifR3 family protein [Mycoplasma sp. G5847]
gi|431933613|gb|ELK20180.1| TIM-barrel , nifR3 family protein [Mycoplasma sp. G5847]
Length = 324
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 154/315 (48%), Gaps = 27/315 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ + PM S +R++S+++G+ L Y MVS + D K ++L + P+ +Q
Sbjct: 11 KVVQGPMAGVSNEAFRIISKQHGASLVYAEMVSVAGMVHDNKKTLDMLNVNKIEHPMSMQ 70
Query: 210 FCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSL 266
GN+ + +A K E + CD ID+N+GCP VA R G+ L L+ +V ++
Sbjct: 71 IFGNNVEEFIKATKWIEENVDCDIIDLNLGCPAPKVAIRSQSGSALLKTPELIYEIVKNV 130
Query: 267 RQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
PV+ KIR+ D N VE A+++E+AG +AVH RT + TG A WE I
Sbjct: 131 VLNTSKPVTAKIRLGWDKNSVNAVEVAKLIEKAGASAIAVHART--RSDFYTGHADWEKI 188
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQ- 375
V++A+ IPVI NG++ + L +TG VM + NP +F TG+
Sbjct: 189 KEVKQAVNIPVIGNGDVVDAKSAKKMLDETGCDAVMVSRACQGNPWIFDQINHYLQTGKE 248
Query: 376 -TRPAWE-------LASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKT 427
+P++E L + L + + ++ R H + +L L ++L K
Sbjct: 249 LEKPSFEEWKSTVLLHLDLLVKLKTEAIAIKEFRKH---LTWYLDVLNNKPLTKILKEKA 305
Query: 428 NHIKDLRKAVDMLRE 442
N I+ ++ D+++E
Sbjct: 306 NKIETIKDVEDIIKE 320
>gi|344253995|gb|EGW10099.1| tRNA-dihydrouridine synthase 2-like [Cricetulus griseus]
Length = 475
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 140/288 (48%), Gaps = 25/288 (8%)
Query: 156 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST----PEDR------- 204
MV LP RLL+ YG+ + Y + + + K++ E+L + P+DR
Sbjct: 1 MVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPDDRVVFRTCE 60
Query: 205 ----PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
++ Q +D++ A+L E GID+N+GCP+ + +G GA L D +
Sbjct: 61 REQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLSDPDKIE 120
Query: 261 NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320
++S+L + + PV+CKIRI + T+ + +ER G +AVHGR ++R + S
Sbjct: 121 KILSTLVKGIHKPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGRNREERPQHP--VS 178
Query: 321 WEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT 376
E I A+ + L+IPVIANG IQ D+E T + VM A ++NP++F
Sbjct: 179 CEVIRAIAETLSIPVIANGGSHDHIQQHLDIEDFRQATAASSVMVARAAMWNPSIFLKDG 238
Query: 377 -RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
RP E+ +Y+ QY + + +C L E+ RLL
Sbjct: 239 LRPLEEVMQKYIRYAVQYD---NHYTNTKYCLCQMLREQLESPQGRLL 283
>gi|407775009|ref|ZP_11122305.1| tRNA-dihydrouridine synthase B [Thalassospira profundimaris WP0211]
gi|407281957|gb|EKF07517.1| tRNA-dihydrouridine synthase B [Thalassospira profundimaris WP0211]
Length = 336
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 140/288 (48%), Gaps = 24/288 (8%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM---STPEDRPLI 207
+LAPM ++LP+R R++G HL + M+++ ++ +E+ + PL
Sbjct: 14 VVLAPMSGVTDLPFRQQVRQFGGHLVVSEMIASDAMTRIQRHEKEVRKMHGDCAAESPLS 73
Query: 208 IQFCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSL 266
+Q G + + + EAAK+ E I DIN+GCP +G+ G+ L D L +++ +
Sbjct: 74 VQLAGTEPEEMAEAAKMNEARGAMIIDINMGCPAKKVTKGYAGSALMRDEKLAADIIKAT 133
Query: 267 RQAVQVPVSCKIRI-YQDVNKTV-EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
AV VPV+ K+R+ + D N+ + AR+ E G +L +HGRT Q G A W+ I
Sbjct: 134 VDAVSVPVTLKMRLGWDDDNRNAPKLARIAEDLGIAMLTIHGRTRCQ--FYKGDADWDAI 191
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP--------ALFTGQT 376
V+ A++IPV+ NG++ D + L ++G GVM G P L TG+
Sbjct: 192 ALVKDAVSIPVLGNGDVNSEEDAKELLERSGADGVMIGRGAQGRPWFLAQVSHYLATGKK 251
Query: 377 RPAWELASEYLDLVAQYPVRLQY--------ARGHVFNMCHHLLTLPE 416
PA L + ++ Y + + AR H+ C+ L E
Sbjct: 252 LPAPTLEIQLQTILRHYDAMIDHHGRQGVRIARKHLAWYCNSLRNATE 299
>gi|239946645|ref|ZP_04698398.1| tRNA-dihydrouridine synthase [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239920921|gb|EER20945.1| tRNA-dihydrouridine synthase [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 325
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/266 (33%), Positives = 138/266 (51%), Gaps = 18/266 (6%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK--LRQEILMSTPEDRP 205
S ILAPM ++L +R L +R+G+ L + MV++ I + + L++ +M +
Sbjct: 10 SSNIILAPMSGVTDLEFRRLVKRFGAGLVVSEMVASRAMIVESRQSLQKSAIMR-DDATS 68
Query: 206 LIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
IQ G + + EAAK+ E ID+N GCP G+ G+ L D L +
Sbjct: 69 ACIQLAGCEPNVIAEAAKMNEDMGAKIIDLNFGCPAKKVVGGYSGSALMRDEQLAAKIFE 128
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVE--YARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
+ +AV++PV+ K+R+ D N A++ E +G Q++ VHGRT Q +G A W+
Sbjct: 129 ATVKAVKLPVTVKMRMGWDDNTKNAPTLAKIAESSGVQMVTVHGRTRCQ--FYSGNADWD 186
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TG 374
I +V++A+ IPVIANG+I A + L ++GV G+M G P L TG
Sbjct: 187 FIRSVKEAVKIPVIANGDITNFAKAKEALQKSGVDGIMVGRGAYGKPWLISQIDHYLKTG 246
Query: 375 QTRPAWELASEYLDLVAQ-YPVRLQY 399
+ + A +A E LD+V + Y L Y
Sbjct: 247 KEKSAPSIA-EQLDIVTEHYDAILDY 271
>gi|134047750|sp|Q92JQ6.2|DUS_RICCN RecName: Full=Probable tRNA-dihydrouridine synthase
Length = 331
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 159/329 (48%), Gaps = 33/329 (10%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK--LRQEILMSTPEDRP 205
S ILAPM ++L +R L +R+G+ L + MV++ I + + L++ +M +
Sbjct: 10 SSNIILAPMSGVTDLEFRRLVKRFGAGLVVSEMVASRAMIVESRQSLKKSAIMR-DDATS 68
Query: 206 LIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
+Q G + + EAAK+ E ID+N GCP G+ G+ L D L +
Sbjct: 69 ACVQLAGCEPNVIAEAAKMNEGMGAKIIDLNFGCPAKKVVGGYSGSALMKDEQLAAKIFE 128
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVE--YARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
+ +AV++PV+ K+R+ D N A++ E +G Q++ VHGRT Q +G A W+
Sbjct: 129 ATVEAVKLPVTVKMRMGWDDNTKNAPTLAKIAESSGVQMITVHGRTRCQ--FYSGNADWD 186
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TG 374
I +V++++ IPVIANG+I A + L ++G G+M G P L TG
Sbjct: 187 FIRSVKESVKIPVIANGDITNFAKAKEALQKSGADGIMVGRGAYGKPWLISQIDHYLKTG 246
Query: 375 QTRPAWELASEYLDLVAQ-YPVRLQY---------ARGHVFNMCHHLLTLPENSDVRLLV 424
+ + A +A E LD+V + Y L Y AR H+ + LP +++ R
Sbjct: 247 EEKSAPSIA-EQLDIVTEHYEAILDYYGESVGVPIARKHI---GWYSSGLPNSAEFR--- 299
Query: 425 GKTNHIKDLRKAVDMLRERFIDYHEGRKL 453
G N + D + + E + E KL
Sbjct: 300 GAVNLMNDPLAVKEKIAEFYTSVMETNKL 328
>gi|341583236|ref|YP_004763727.1| tRNA-dihydrouridine synthase [Rickettsia heilongjiangensis 054]
gi|340807462|gb|AEK74050.1| tRNA-dihydrouridine synthase [Rickettsia heilongjiangensis 054]
Length = 331
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 158/329 (48%), Gaps = 33/329 (10%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK--LRQEILMSTPEDRP 205
S ILAPM ++L +R L +R+G+ L + MV++ I + + L++ +M E
Sbjct: 10 SSNIILAPMSGVTDLEFRRLVKRFGAGLVVSEMVASRAMIVESRQSLKKSAIMRDDETSA 69
Query: 206 LIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
+ Q G + + EAAK+ E ID+N GCP G+ G+ L D L +
Sbjct: 70 CV-QLAGCEPNVIAEAAKMNEGMGAKIIDLNFGCPAKKVVGGYSGSALMRDEQLAAKIFE 128
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVE--YARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
+ +AV++PV+ K+RI D N A++ E +G Q++ VHGRT Q +G A W+
Sbjct: 129 ATVEAVKLPVTVKMRIGWDDNTKNAPTLAKIAESSGVQMITVHGRTRCQ--FYSGNADWD 186
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TG 374
I +V++++ IPVIANG+I A + L ++ G+M G P L TG
Sbjct: 187 FIRSVKESVKIPVIANGDITNFAKAKEALQKSSADGIMVGRGAYGKPWLISQIDHYLKTG 246
Query: 375 QTRPAWELASEYLDLVAQ-YPVRLQY---------ARGHVFNMCHHLLTLPENSDVRLLV 424
+ + A +A E LD+V + Y L Y AR H+ + LP +++ R
Sbjct: 247 EEKSAPSIA-EQLDIVTEHYEAILDYYGESVGVPIARKHI---GWYSSGLPNSAEFR--- 299
Query: 425 GKTNHIKDLRKAVDMLRERFIDYHEGRKL 453
G N + D + + E + E KL
Sbjct: 300 GAVNLMNDPLAVKEKIAEFYTSVMETNKL 328
>gi|268315976|ref|YP_003289695.1| nifR3 family TIM-barrel protein [Rhodothermus marinus DSM 4252]
gi|262333510|gb|ACY47307.1| TIM-barrel protein, nifR3 family [Rhodothermus marinus DSM 4252]
Length = 358
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 136/266 (51%), Gaps = 20/266 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D S+ P+RLL +RYG+ + +T +S+ + + + + L E+RP
Sbjct: 8 LGERPLFLAPMEDVSDPPFRLLCKRYGADMVFTEFISSGGLVHESEDAVKKLDIYDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHC-DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
+ IQ G + + + EAA++ + D IDIN GCP GA + D + L
Sbjct: 68 VGIQIFGGELEQVREAARIVDQIGPDVIDINFGCPVRKVVCKDAGAGVLRDLNKMRALTE 127
Query: 265 SLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
++ + PV+ K R+ D + +E ARMLE G Q L VH RT Q M G A WE
Sbjct: 128 AVIEVATRPVTVKTRLGWDDRSIRILEVARMLEDCGVQALTVHARTRAQ--MYKGSARWE 185
Query: 323 HITAVRK-ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------T 373
+ +++ L+IP+I NG+ V+ +TGV GVM G + NP +F T
Sbjct: 186 WLRRLKELGLSIPIIGNGDALTPEKVKQMFDETGVDGVMIGRGAIGNPWIFRDAKIYMET 245
Query: 374 GQT--RPAWE----LASEYLDLVAQY 393
G+ P+WE + +E+L+L Q+
Sbjct: 246 GELPPPPSWEERVRVVAEHLELKCQW 271
Score = 45.8 bits (107), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 75 QLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDR 134
+LG LAPM D S+ P+RLL +RYG+ + +T +S+ + + + + L E+R
Sbjct: 7 ELGERPLFLAPMEDVSDPPFRLLCKRYGADMVFTEFISSGGLVHESEDAVKKLDIYDEER 66
Query: 135 PLIIQ 139
P+ IQ
Sbjct: 67 PVGIQ 71
>gi|430003565|emb|CCF19354.1| putative tRNA-dihydrouridine synthase (Nitrogen regulation protein
nifR3) [Rhizobium sp.]
Length = 332
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 123/228 (53%), Gaps = 16/228 (7%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK-----KLRQEILMSTPEDR 204
R +LAPM ++LP+R ++ R+G+ L T M+++ + + +L++ L
Sbjct: 20 RVVLAPMSGVTDLPFREIAWRWGAGLVVTEMIASRELAMSRGESWARLKRAGL------G 73
Query: 205 PLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
P ++Q G + + EAA++A + D IDIN+GCP G G+ L D L +L+
Sbjct: 74 PHMVQLAGREPHWMAEAARIAADNGADIIDINMGCPAKKVTGGLSGSALMRDPVLALSLI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV VPV+ K+R+ D N + AR E AG +L+ +HGRT Q G A W
Sbjct: 134 EATVKAVDVPVTLKMRLGWDGNSINAPQIARQAEEAGVRLVTIHGRTRMQ--FYEGRADW 191
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
I AVR+A+++P+IANG++Q AD LA +G VM G P
Sbjct: 192 NAIRAVREAISVPLIANGDVQSPADAREILAASGADAVMMGRGAQGRP 239
>gi|354603407|ref|ZP_09021405.1| hypothetical protein HMPREF9450_00320 [Alistipes indistinctus YIT
12060]
gi|353348787|gb|EHB93054.1| hypothetical protein HMPREF9450_00320 [Alistipes indistinctus YIT
12060]
Length = 340
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 101/336 (30%), Positives = 153/336 (45%), Gaps = 32/336 (9%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG LAPM D ++ +R + +RYG+ + YT + + I D L +RP
Sbjct: 8 LGEKPLFLAPMEDVTDPSFRFMCKRYGADMVYTEFIPSDGLIRDASKALAKLNIFDYERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAEPHC-DGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G++ + + EAA++AE D IDIN GCP + +A RG G+ + D P + +
Sbjct: 68 VGIQLYGHEIEPMVEAARMAEAAGPDLIDINFGCPVRKIAGRGA-GSGMMRDVPKMVEMT 126
Query: 264 SSLRQAVQVPVSCKIRIY--QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ AV++PV+ K R+ D VE A L+ G L +HGRT Q M G A W
Sbjct: 127 RRIVGAVKLPVTVKTRLGWDDDSKNIVEIAERLQDVGIAALTIHGRTRAQ--MYRGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG----- 374
I V++ +TIPVI NG+I + GV GVM P +FT
Sbjct: 185 TLIGEVKRNPRMTIPVIGNGDIGSPQQAAGAFDRYGVDGVMIGRATYGRPWIFTEIRHYL 244
Query: 375 ---------QTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHL----LTLPENSDVR 421
R ELA +LD ++ + +G V M HL LP+ R
Sbjct: 245 TTGRLMPQPSVRERVELAKLHLDKSLEF----KGEKGGVLEMRRHLSCYFKGLPDFKATR 300
Query: 422 LLVGKTNHIKDLRKAVDMLRERFIDYHEGRKLWPPP 457
L + ++R +D + E + D+ + ++ P P
Sbjct: 301 LKLVTLFDPDEIRATLDYVAETWGDF-DASEIVPQP 335
>gi|335038440|ref|ZP_08531687.1| TIM-barrel protein, nifR3 family [Caldalkalibacillus thermarum
TA2.A1]
gi|334181667|gb|EGL84185.1| TIM-barrel protein, nifR3 family [Caldalkalibacillus thermarum
TA2.A1]
Length = 331
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 117/224 (52%), Gaps = 6/224 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ +LAPM +RL+++ +G+ L Y MVS I +++L +RPL +Q
Sbjct: 13 QVVLAPMAGVCNPAFRLIAKEFGAGLVYAEMVSDKALIHGNLRTKKMLYVDERERPLSLQ 72
Query: 210 FCGNDSKNLTEAAKLAEP--HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G D K L EAAK+ + + D IDIN+GCP + + GA D + +V+++
Sbjct: 73 IFGGDRKTLVEAAKIVDKQTNADIIDINMGCPAPKIIKCNAGAKWLLDPNKIYEMVAAVV 132
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV+ PV+ K+RI D VE A ER G Q +AVHGRT Q M G A W+ I
Sbjct: 133 DAVEKPVTVKMRIGWDDEHIYAVENALAAERGGAQAVAVHGRTRAQ--MYEGKARWDVIK 190
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
V++A+ IPVI NG++ + L + GV VM L NP
Sbjct: 191 QVKEAVKIPVIGNGDVDSPQKAKQMLDEIGVDAVMIGRAALGNP 234
>gi|317474747|ref|ZP_07934021.1| dihydrouridine synthase [Bacteroides eggerthii 1_2_48FAA]
gi|316909428|gb|EFV31108.1| dihydrouridine synthase [Bacteroides eggerthii 1_2_48FAA]
Length = 327
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 92/288 (31%), Positives = 144/288 (50%), Gaps = 23/288 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 205
LG +LAPM D ++ +RL+ + +G+ + YT VS+ I ++ L + E+RP
Sbjct: 8 LGKYPVLLAPMEDVTDPAFRLMCKNFGADMVYTEFVSSDALIRSVSKTEQKLKISDEERP 67
Query: 206 LIIQFCGNDSKNLTEAAKLAE-PHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 263
+ IQ G D+ + EAA++ E D +DIN GCP + VA +G LQ + P + +
Sbjct: 68 VAIQIYGKDTDTMVEAARIVEQARPDILDINFGCPVKRVAGKGAGAGMLQ-NIPKMLEIT 126
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
S+ AV++PV+ K R+ D + V+ A L+ G L +HGRT Q M TG A W
Sbjct: 127 RSVVDAVKIPVTVKTRLGWDASNKIIVDLAEQLQDCGIAALTIHGRTRAQ--MYTGEADW 184
Query: 322 EHITAVRKA--LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF------- 372
I VR + IP+I NG+I + C + GV +M + P +F
Sbjct: 185 TLIGEVRNNPRMHIPIIGNGDITTPQRAKECFDRYGVDAIMIGRASFGRPWIFKEVKHYL 244
Query: 373 -TGQTRPAWELASEY-LDLVAQY---PVRLQYARGHVFNMCHHLLTLP 415
TG+ P L+SE+ L+++ Q V+L R + ++ HL P
Sbjct: 245 ETGEEMPP--LSSEWKLNVLRQEVEDSVKLLDERRGILHVRRHLAASP 290
Score = 43.5 bits (101), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 76 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRP 135
LG +LAPM D ++ +RL+ + +G+ + YT VS+ I ++ L + E+RP
Sbjct: 8 LGKYPVLLAPMEDVTDPAFRLMCKNFGADMVYTEFVSSDALIRSVSKTEQKLKISDEERP 67
Query: 136 LIIQ 139
+ IQ
Sbjct: 68 VAIQ 71
>gi|374307804|ref|YP_005054235.1| TIM-barrel protein, NifR3 family [Filifactor alocis ATCC 35896]
gi|291166185|gb|EFE28231.1| TIM-barrel protein, NifR3 family [Filifactor alocis ATCC 35896]
Length = 319
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 149/309 (48%), Gaps = 22/309 (7%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
LAPM ++ P+RL+ RYG+ L YT M++A + +++ P++ + IQ
Sbjct: 13 FLAPMAGINDFPFRLMCHRYGAVLTYTEMINAKALCYGDENTWKMMQVHPDEGDVAIQIF 72
Query: 212 GNDSKNLTEAAKLAEPHCDG--IDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
GN+ + + EA + E IDIN+GCP V K G G+ L L +V + +Q
Sbjct: 73 GNEPEFIAEAVRKIEQLSRFVLIDINMGCPAPKVVKNGD-GSALMKKPELAQKIVETAKQ 131
Query: 269 AVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
+PV+ K R D + +E+A+ ++ AG + VHGRT ++ +G+A W +
Sbjct: 132 NTILPVTVKFRKGWDSTQVNALEFAKQMQEAGADAVTVHGRTREE--FYSGVADWNIVKE 189
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPA------- 379
++KAL IPVI NG+I+ E + + V VM G NP LF R
Sbjct: 190 IKKALYIPVIGNGDIKDQETFEERVKLSSVDAVMIGRGAQGNPFLFNSLVRNGPKKENVP 249
Query: 380 ----WELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRK 435
+++ E+ +L A+Y + R ++ ++ LP + VR + N D++
Sbjct: 250 FQEIYDIVKEHYELEAEYKGIDKAVREMRKHIGWYIKGLPMAAKVR---NEINQTTDIQT 306
Query: 436 AVDMLRERF 444
A +L E F
Sbjct: 307 AQKLLTEYF 315
Score = 43.1 bits (100), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 29/204 (14%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRT 141
LAPM ++ P+RL+ RYG+ L YT M++A + +++ P++ + IQ
Sbjct: 13 FLAPMAGINDFPFRLMCHRYGAVLTYTEMINAKALCYGDENTWKMMQVHPDEGDVAIQ-- 70
Query: 142 IFPRLGSPRFILAPMVDASELP-WRLLSRRYGSHLCYTPMV----SAHQFIADKKLRQEI 196
IF P FI + +L + L+ G C P V + +L Q+I
Sbjct: 71 IFGN--EPEFIAEAVRKIEQLSRFVLIDINMG---CPAPKVVKNGDGSALMKKPELAQKI 125
Query: 197 LMSTPEDR--PLIIQF-CGNDSK--NLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGA 250
+ + ++ P+ ++F G DS N E AK + E D + ++ + Y
Sbjct: 126 VETAKQNTILPVTVKFRKGWDSTQVNALEFAKQMQEAGADAVTVH-----GRTREEFYSG 180
Query: 251 YLQDDWPLLTNLVSSLRQAVQVPV 274
DW N+V +++A+ +PV
Sbjct: 181 VA--DW----NIVKEIKKALYIPV 198
>gi|301091909|ref|XP_002896129.1| tRNA-dihydrouridine synthase, putative [Phytophthora infestans
T30-4]
gi|262094949|gb|EEY53001.1| tRNA-dihydrouridine synthase, putative [Phytophthora infestans
T30-4]
Length = 480
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 140/279 (50%), Gaps = 19/279 (6%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS------ 199
L + + L+PMV + LP RLLS RYG+ L Y + + I+ ++ +++ +
Sbjct: 4 LYANKVCLSPMVRSGTLPLRLLSLRYGADLVYGEEIIDKRIISAVRVPNDVVNAVDFVSR 63
Query: 200 ----------TPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 249
+ E ++ Q D+ +AA+ +DIN+GCP+ + +G G
Sbjct: 64 NGDSVVFRTCSEEAGKVVFQIGTADAVLALKAAEAVARDVAAVDINMGCPKHFSVQGGMG 123
Query: 250 AYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309
A L + +++ +LR+ + +PVSCKIR+ ++ TV+ AR LE AG + VH R
Sbjct: 124 AALLRKPEVACDIMKTLRRNLNIPVSCKIRLLPEIQDTVDLARRLEDAGACAVGVHMRQT 183
Query: 310 DQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
+R + ASW+ + V AL++PV+ANG++ D+ +G + + A G L NP
Sbjct: 184 HERPHDK--ASWDRLAPVVSALSVPVLANGDVFMHEDINKLRKLSGASSFLIARGALANP 241
Query: 370 ALFTGQTR-PAWELASEYLDLVAQYPVRLQYARGHVFNM 407
++F + R P ++ EYL A+ Q + +V M
Sbjct: 242 SIFRKEGRLPIDQVVREYLKAAAEVDNVFQNTKYNVMRM 280
>gi|152986975|ref|YP_001350893.1| hypothetical protein PSPA7_5572 [Pseudomonas aeruginosa PA7]
gi|452879404|ref|ZP_21956511.1| NifR3 family TIM-barrel protein [Pseudomonas aeruginosa VRFPA01]
gi|150962133|gb|ABR84158.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
gi|452184035|gb|EME11053.1| NifR3 family TIM-barrel protein [Pseudomonas aeruginosa VRFPA01]
Length = 332
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 5/226 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R ILAPM ++ P+R L RR G+ + + MV++ + + + + L+ ED P +Q
Sbjct: 14 RLILAPMAGVTDRPFRQLCRRLGAGMVVSEMVTSDVRLWNSRKSRLRLIHDGEDEPRSVQ 73
Query: 210 FCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G D L EAA+ E IDIN+GCP G+ L D L+ ++ ++ +
Sbjct: 74 IAGGDPAMLAEAAQRNVELGAQIIDINMGCPAKKVCNKAAGSALLRDEALVAEILDAVVR 133
Query: 269 AVQVPVSCKIRIY--QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV VPV+ KIR +D V AR+ E+AG Q LAVHGRT + + TG A +E I A
Sbjct: 134 AVDVPVTLKIRTGWDRDNRNGVTVARLAEQAGIQALAVHGRT--RADLYTGEAEYETIAA 191
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
+++A++IPV ANG+I + QTGV ++ P +F
Sbjct: 192 IKQAVSIPVFANGDIDSPEKARKVIEQTGVDALLIGRAAQGRPWIF 237
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 111/259 (42%), Gaps = 32/259 (12%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
R ILAPM ++ P+R L RR G+ + + MV++ + + + + L+ ED P
Sbjct: 14 RLILAPMAGVTDRPFRQLCRRLGAGMVVSEMVTSDVRLWNSRKSRLRLIHDGEDEP---- 69
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYG---SHLCYTPMVSAHQFIADKKLRQEI 196
R++ G P + EL +++ G +C SA + D+ L EI
Sbjct: 70 RSVQIAGGDPAMLAEAAQRNVELGAQIIDINMGCPAKKVCNKAAGSA--LLRDEALVAEI 127
Query: 197 LMSTPE--DRPLIIQF---CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAY 251
L + D P+ ++ D++N A+LAE GI Q +A G A
Sbjct: 128 LDAVVRAVDVPVTLKIRTGWDRDNRNGVTVARLAEQA--GI-------QALAVHGRTRAD 178
Query: 252 LQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLL----AVHGR 307
L +++++QAV +PV D++ + +++E+ G L A GR
Sbjct: 179 LYTGEAEYET-IAAIKQAVSIPVFAN----GDIDSPEKARKVIEQTGVDALLIGRAAQGR 233
Query: 308 TVDQRGMNTGLASWEHITA 326
R ++ L + EH+ A
Sbjct: 234 PWIFREIDHYLRTGEHLPA 252
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.136 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,975,138,274
Number of Sequences: 23463169
Number of extensions: 338339114
Number of successful extensions: 789028
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5110
Number of HSP's successfully gapped in prelim test: 3529
Number of HSP's that attempted gapping in prelim test: 761739
Number of HSP's gapped (non-prelim): 14113
length of query: 487
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 340
effective length of database: 8,910,109,524
effective search space: 3029437238160
effective search space used: 3029437238160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 79 (35.0 bits)