BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7343
(487 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P1R4|DUS1L_HUMAN tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo
sapiens GN=DUS1L PE=1 SV=1
Length = 473
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/345 (52%), Positives = 234/345 (67%), Gaps = 19/345 (5%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST--PED 203
L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G +G ASWEH
Sbjct: 134 LLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE CL TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443
EYLD+V ++P L Y R H+F + HH TL + ++R + K ++ + L+ R
Sbjct: 254 EEYLDIVREHPCPLSYVRAHLFKLWHH--TLQVHQELREELAKVKTLEGIAAVSQELKLR 311
Query: 444 F---IDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
I EG K P + P WICQPY+RP P +
Sbjct: 312 CQEEISRQEGAK--PTGDLPFH----------WICQPYIRPGPRE 344
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+ W++ L R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 8 EFWSRTLRGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYC 67
Query: 130 T--PEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 68 EVCPEDRPLIVQ 79
>sp|Q8C2P3|DUS1L_MOUSE tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Mus
musculus GN=Dus1l PE=2 SV=1
Length = 475
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 184/349 (52%), Positives = 235/349 (67%), Gaps = 25/349 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS--TPED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G G ASWEH
Sbjct: 134 LLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNIQCL DVE C+ TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTL-----PENSDVRLLVG--KTNHIKDLRKA 436
EYLD+V Q+P L Y R H+F + HH L + E + V+ L G + LR
Sbjct: 254 EEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREELAKVKTLEGVAAVSQALKLRCQ 313
Query: 437 VDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
DM R++ EG + P N P WICQPY+RP P +
Sbjct: 314 EDMSRQQ-----EGVR--PADNLPAFH---------WICQPYIRPGPRE 346
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 51/72 (70%), Gaps = 3/72 (4%)
Query: 71 DAWTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
+ W++ LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 8 EFWSRTLGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYC 67
Query: 130 --TPEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 68 DVCPEDRPLIVQ 79
>sp|Q8K582|DUS1L_RAT tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus
norvegicus GN=Dus1l PE=2 SV=1
Length = 438
Score = 360 bits (923), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 182/349 (52%), Positives = 235/349 (67%), Gaps = 25/349 (7%)
Query: 146 LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS--TPED 203
LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L PED
Sbjct: 14 LGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPED 73
Query: 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
RPLI+QFC ND + +AA LA+ +CD ID+N+GCPQM+AKRG YGA+LQ++W LL ++
Sbjct: 74 RPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEEWDLLQRMI 133
Query: 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+ + VPV+CKIR++ +++KTV YA+MLE+AGCQLL VHGRT +Q+G G ASWEH
Sbjct: 134 LLAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWEH 193
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELA 383
I AVRKA+ IPV ANGNI+CL DVE C+ TGV GVM+AEGNL+NPALF G++ WELA
Sbjct: 194 IKAVRKAVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVWELA 253
Query: 384 SEYLDLVAQYPVRLQYARGHVFNMCHHLLTL-----PENSDVRLLVG--KTNHIKDLRKA 436
EYLD+V Q+P L Y R H+F + HH L + E + V+ L G + LR
Sbjct: 254 DEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREELAKVKTLEGVAAVSQALKLRCQ 313
Query: 437 VDMLRERFIDYHEGRKLWPPPNYPMSSNHHNLSLPPWICQPYVRPTPEQ 485
DM R++ EG + P N P WICQPY+RP P++
Sbjct: 314 EDMARQQ-----EGVR--PADNLPAFH---------WICQPYIRPGPKE 346
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 3/70 (4%)
Query: 73 WTQ-LGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS-- 129
W++ LG R ++APMVD SEL WRLLSRR+G+ LCYTPM+ A F+ D R+E L
Sbjct: 10 WSRALGGARHVVAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDV 69
Query: 130 TPEDRPLIIQ 139
PEDRPLI+Q
Sbjct: 70 CPEDRPLIVQ 79
>sp|Q9HGN6|DUS1_SCHPO tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dus1 PE=3 SV=1
Length = 399
Score = 281 bits (718), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 141/363 (38%), Positives = 226/363 (62%), Gaps = 23/363 (6%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL-- 197
R + ++G P+ ILAPMVD SELPWR+L+RR G+ LCY+PM + F + R ++
Sbjct: 9 RDFYNKIGRPKRILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRNKVFST 68
Query: 198 MSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
+ PE+RPLIIQFCGND + + +AAK+A P+CD +D+N+GCPQ +AK+G YG++LQ++W
Sbjct: 69 RTIPEERPLIIQFCGNDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFLQENWN 128
Query: 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
L+ ++++ L + +PV+ KIRI+ D KT++YA+M+ +AG +LAVHGR +Q+G TG
Sbjct: 129 LIESIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMILKAGASILAVHGRLREQKGHFTG 188
Query: 318 LASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375
+A WE I +RK L + ANGNI D++ C+ TGV GV++AEG+LYNP +F
Sbjct: 189 IADWEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRIFLPP 248
Query: 376 TRPAW-------ELASEYLDLVAQYPVRLQYA-----RGHVFNMCHHLLTLPENSDVRLL 423
+ P ++ EYL+++ ++ + Y+ +GH+F + LL++ ++D+R
Sbjct: 249 SSPLMTLYPRIDDMCEEYLNIIREFKLESDYSSLSAIKGHLFKLMRPLLSI--HTDIRSK 306
Query: 424 VGKTNHIKDLRK---AVDMLRERFIDYHEGRKLWPPPNYPMS--SNHHNLSLPPWICQPY 478
+ + +D V MLR+R ++ E ++ + S + +P W QPY
Sbjct: 307 LAQGCTPRDFETFPPVVAMLRKRLLECEEKGEINEDKDVKESVKDSMGYPVIPWWRVQPY 366
Query: 479 VRP 481
+RP
Sbjct: 367 IRP 369
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
Query: 71 DAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL--M 128
D + ++G P+ ILAPMVD SELPWR+L+RR G+ LCY+PM + F + R ++
Sbjct: 10 DFYNKIGRPKRILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRNKVFSTR 69
Query: 129 STPEDRPLIIQ 139
+ PE+RPLIIQ
Sbjct: 70 TIPEERPLIIQ 80
>sp|P53759|DUS1_YEAST tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DUS1 PE=1
SV=1
Length = 423
Score = 262 bits (669), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 145/372 (38%), Positives = 210/372 (56%), Gaps = 38/372 (10%)
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE---I 196
R +F ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++
Sbjct: 20 RQLFDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSS 79
Query: 197 LMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 256
L + DRPL++QFC ND + L AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W
Sbjct: 80 LDGSSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEW 139
Query: 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
L+ NL+++L + ++VPV+ KIRI+ D K++ YA+M+ AG Q L VHGR +Q+G T
Sbjct: 140 DLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQKT 199
Query: 317 GLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT- 373
GLA+WE I +R L + ANGNI D+ C+ G VM+AEGNLYNP +F
Sbjct: 200 GLANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPGVFNV 259
Query: 374 GQTRPAW-------ELASEYLDLVAQYPVRLQYARGHVFNMCHHLLT-----LPENSDVR 421
GQT+ ++ EY +V + Q ++ M H LP ++D+R
Sbjct: 260 GQTKNKEKIFPRVDKIIREYFQIVKE----CQESKASKTAMKSHFFKILRPFLPHHTDIR 315
Query: 422 LLVGKTNH-----------IKDLRKAVDMLRER-FIDYHEGRKLWPPPNYPMSSNHHNLS 469
+ N +K + K V + E+ I + + ++ S +
Sbjct: 316 STLATMNAKATWEEWEEQVVKPVEKVVQEIFEQPDIAIKDEITIGEKQSWGGSYR----T 371
Query: 470 LPPWICQPYVRP 481
+P W CQPY RP
Sbjct: 372 VPYWRCQPYFRP 383
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 73 WTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQE---ILMS 129
+ ++G P I+APMVD SEL WR+LSRRYG+ L YTPM+ A F KK R++ L
Sbjct: 23 FDKIGRPTRIVAPMVDQSELAWRILSRRYGATLAYTPMLHAKLFATSKKYREDNWSSLDG 82
Query: 130 TPEDRPLIIQ 139
+ DRPL++Q
Sbjct: 83 SSVDRPLVVQ 92
>sp|O95620|DUS4L_HUMAN tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Homo
sapiens GN=DUS4L PE=2 SV=2
Length = 317
Score = 172 bits (436), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 139/241 (57%), Gaps = 6/241 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA++ P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 90 ANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQVRNQVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +TV+ + E G + VHGRT ++R ++ I ++
Sbjct: 150 TPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEERHQPV---HYDSIKIIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IPVIANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 207 ENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVD 266
Query: 389 L 389
+
Sbjct: 267 I 267
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQ 87
>sp|Q32M08|DUS4L_MOUSE tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Mus
musculus GN=Dus4l PE=2 SV=1
Length = 324
Score = 172 bits (435), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 146/269 (54%), Gaps = 6/269 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+QF
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRSIKARDSEFTTNQGDCPLIVQFA 89
Query: 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271
ND++ L++AA L P+ +GIDIN GCPQ A YGA L + L+ ++V +R V+
Sbjct: 90 ANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINKPELVHDMVRQVRNRVE 149
Query: 272 VP---VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
P VS KIRI+ D+ +T++ R E G + VHGRTV++R ++ I ++
Sbjct: 150 SPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVEERHQPV---HYDAIKMIK 206
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388
+ ++IP++ANG+I+ L + E TG GVM A G L NPA+F G + +++D
Sbjct: 207 ENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAGYEETPLKCIWDWVD 266
Query: 389 LVAQYPVRLQYARGHVFNMCHHLLTLPEN 417
+ + H+ M + + E
Sbjct: 267 ISLELGTPFMCFHQHLMYMMEKITSRQEK 295
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ APMV S+L +R L R+Y LCYTPM+ A F+ K R + D PLI+Q
Sbjct: 30 VCAPMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRSIKARDSEFTTNQGDCPLIVQ 87
>sp|Q06063|DUS4_YEAST tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+] OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DUS4 PE=1
SV=1
Length = 367
Score = 153 bits (387), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 103/320 (32%), Positives = 160/320 (50%), Gaps = 12/320 (3%)
Query: 130 TPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD 189
T E PL I +T G P I PMV S+LP+R L R Y + Y+PM+ A +++ +
Sbjct: 20 TEETDPLHIIKTRQKTHGRPVTIAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRN 79
Query: 190 KKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 249
+ R L + ED PLI+Q N+ +L + ++ P+CDGI IN GCP R G
Sbjct: 80 EHARISDLSTNNEDTPLIVQVGVNNVADLLKFVEMVAPYCDGIGINCGCPIKEQIREGIG 139
Query: 250 AYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307
L + LL ++V +++ ++ + KIRI++ +++TVE R L AG + +HGR
Sbjct: 140 CALIYNSDLLCSMVHAVKDKYGDKLRIETKIRIHEALDETVELCRKLCDAGVDWITIHGR 199
Query: 308 TVDQRGMN-TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366
T R L + ++I +PVIANG+ L+D+E TG GVM G L
Sbjct: 200 TRRTRSSQPANLDAIKYIIENISDKNVPVIANGDCFKLSDLERITKYTGAHGVMAVRGLL 259
Query: 367 YNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMC-HHLLTLPENSDVRL-LV 424
NPALF G T W ++ ++ G F + HHL + EN +++ L+
Sbjct: 260 SNPALFAGYTTCPWGCIEKFCYWALEFG-------GLPFQLAQHHLYCMLENMELKKSLL 312
Query: 425 GKTNHIKDLRKAVDMLRERF 444
K ++K+ +D + F
Sbjct: 313 KKMMNLKNYISLIDWFNKTF 332
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 77 GSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPL 136
G P I PMV S+LP+R L R Y + Y+PM+ A +++ ++ R L + ED PL
Sbjct: 37 GRPVTIAGPMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRNEHARISDLSTNNEDTPL 96
Query: 137 IIQRTIFPRLGSPRFI--LAPMVDA 159
I+Q + +F+ +AP D
Sbjct: 97 IVQVGVNNVADLLKFVEMVAPYCDG 121
>sp|Q09504|YQI2_CAEEL Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2
OS=Caenorhabditis elegans GN=C45G9.2 PE=3 SV=2
Length = 284
Score = 149 bits (375), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 125/241 (51%), Gaps = 6/241 (2%)
Query: 156 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDS 215
MV S+L +R L R Y +C+TPM+ A FI +K R L D PLI+QF +D
Sbjct: 1 MVRYSKLAFRQLVRVYDVDVCFTPMIYAKNFIESEKCRSSELSVCEGDSPLIVQFATDDP 60
Query: 216 KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVP-- 273
L+EAA++ G+D+N GCP+ + +G+ L LL ++V R + P
Sbjct: 61 FVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALLSKPELLADMVRQTRARIPDPDF 120
Query: 274 -VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT 332
VS KIRI D+ KTV+ R E AG L VHGRT QR + + + V+ +++
Sbjct: 121 SVSLKIRINHDIEKTVDLCRKAEAAGVTHLTVHGRTPSQRAEPIDIQA---LRIVKDSVS 177
Query: 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQ 392
+P+IANG I + QTGV G+M A G L NPALF G + ++ L +
Sbjct: 178 VPIIANGGITTREEALFLAEQTGVDGIMAANGLLDNPALFAGHEHTPSDCVENFMRLSRE 237
Query: 393 Y 393
Y
Sbjct: 238 Y 238
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 86 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
MV S+L +R L R Y +C+TPM+ A FI +K R L D PLI+Q
Sbjct: 1 MVRYSKLAFRQLVRVYDVDVCFTPMIYAKNFIESEKCRSSELSVCEGDSPLIVQ 54
>sp|O74553|DUS4_SCHPO tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dus4 PE=3 SV=1
Length = 326
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 142/278 (51%), Gaps = 11/278 (3%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
P I APMV S+LP+R L R Y + + YTPM+ A +F+ K R + D LI+
Sbjct: 20 PVHIAAPMVRYSKLPFRQLVRDYNTDIVYTPMILAKEFLHPKG-RYFDFSTNDADASLIL 78
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
QF +D L +AA+L P+ DGI IN GCPQ A + G+ L D+ + LV +++
Sbjct: 79 QFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAIQEGIGSALLDEPEKVHKLVRAVKS 138
Query: 269 AV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
+ KIRI +D+NKT +++E++G ++ VHGRT R ++ + + I
Sbjct: 139 TLGESFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVHGRTRQDR--SSFPVNLDAIRE 196
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEY 386
VR + IPV+ANG+++ L T G+M+A G L NPALF G W +
Sbjct: 197 VRPCVQIPVVANGDVKSLRKGLEIAKYTETQGIMSARGLLENPALFAGYEETPWGCVERF 256
Query: 387 LDLVAQYPVRLQYARGHVFNMCHHL------LTLPENS 418
L Y + H+ M + +T+P++S
Sbjct: 257 LWYSTSYSLNFHLFYHHLTTMMGQMTTKRERMTIPKDS 294
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
P I APMV S+LP+R L R Y + + YTPM+ A +F+ K R + D LI+
Sbjct: 20 PVHIAAPMVRYSKLPFRQLVRDYNTDIVYTPMILAKEFLHPKG-RYFDFSTNDADASLIL 78
Query: 139 Q 139
Q
Sbjct: 79 Q 79
>sp|Q9NX74|DUS2L_HUMAN tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Homo sapiens
GN=DUS2L PE=1 SV=1
Length = 493
Score = 139 bits (349), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 146/294 (49%), Gaps = 25/294 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS----TPEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + I K++ E+L + P+DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDRV 72
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q +D++ A+L E GID+N+GCP+ + +G GA L
Sbjct: 73 VFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLS 132
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + ++S+L + + PV+CKIRI + T+ + +ER G +AVHGR ++R
Sbjct: 133 DPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTLSLVKRIERTGIAAIAVHGRKREERPQ 192
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ S E I A+ L+IPVIANG IQ +D+E T + VM A ++NP+
Sbjct: 193 HP--VSCEVIKAIADTLSIPVIANGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWNPS 250
Query: 371 LFTGQT-RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+F + RP E+ +Y+ QY + + +C L E+ RLL
Sbjct: 251 IFLKEGLRPLEEVMQKYIRYAVQYD---NHYTNTKYCLCQMLREQLESPQGRLL 301
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS----TPEDR 134
+ ILAPMV LP RLL+ YG+ + Y + + I K++ E+L + P+DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPDDR 71
>sp|Q9D7B1|DUS2L_MOUSE tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Mus musculus
GN=Dus2l PE=1 SV=1
Length = 493
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 144/294 (48%), Gaps = 25/294 (8%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST----PEDR- 204
+ ILAPMV LP RLL+ YG+ + Y + + + K++ E+L + P+DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPDDRV 72
Query: 205 ----------PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ Q +D++ A+L E GID+N+GCP+ + +G GA L
Sbjct: 73 VFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLS 132
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
D + ++S+L + PV+CKIRI + T+ + +ER G +AVHGR D+R
Sbjct: 133 DPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTLNLVKRIERTGISAIAVHGRNRDERPQ 192
Query: 315 NTGLASWEHITAVRKALTIPVIANGN----IQCLADVEACLAQTGVAGVMTAEGNLYNPA 370
+ S E I A+ + L+IPVIANG IQ D+E T + VM A ++NP+
Sbjct: 193 HP--VSCEVIRAIAETLSIPVIANGGSHDHIQQHVDIEDFRQATAASSVMVARAAMWNPS 250
Query: 371 LFTGQT-RPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLL 423
+F RP E+ +Y+ QY + + +C L E+ RLL
Sbjct: 251 IFLKDGLRPLEEVMQKYIRYAVQYD---NHYTNTKYCLCQMLREQLESPQGRLL 301
Score = 36.6 bits (83), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST----PEDR 134
+ ILAPMV LP RLL+ YG+ + Y + + + K++ E+L + P+DR
Sbjct: 13 KLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPDDR 71
>sp|P41504|DUS_RHILP Probable tRNA-dihydrouridine synthase OS=Rhizobium leguminosarum
bv. phaseoli GN=dus PE=3 SV=1
Length = 317
Score = 132 bits (333), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 143/268 (53%), Gaps = 16/268 (5%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R +LAPM +++P+R L+ R+G+ L T MV++ + + D L + RP ++Q
Sbjct: 6 RVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRELVNDTAESWSRLKAAGF-RPHMVQ 64
Query: 210 FCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G ++ + EAAK+A H D IDIN+GCP G+ G+ L D L+ + +
Sbjct: 65 LAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIGGYSGSALMRDPDHALGLIEATVK 124
Query: 269 AVQVPVSCKIRIYQDVNKTV--EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV +PV+ K+R+ D N + AR E +G QL+ +HGRT Q G A W+ I A
Sbjct: 125 AVDIPVTLKMRLGWDENSINAPDIARRAEASGIQLVTIHGRTRMQ--FYEGRADWDAIRA 182
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA---EGNLYNPALFTGQTRPAWE-- 381
VR+ +++P+IANG+++ D + L ++G VM +G ++ + G P E
Sbjct: 183 VREVISVPLIANGDVETAHDAQEILRRSGADAVMIGRGCQGRPWHAGVLAGAAEPRREDI 242
Query: 382 --LASEYLDLVAQY---PVRLQYARGHV 404
+A E+ ++ + V +++AR H+
Sbjct: 243 ADIAVEHYRMMLDFYGEAVAIRHARKHL 270
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIAD 119
R +LAPM +++P+R L+ R+G+ L T MV++ + + D
Sbjct: 6 RVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRELVND 45
>sp|P45672|DUS_AZOBR Probable tRNA-dihydrouridine synthase OS=Azospirillum brasilense
GN=dus PE=3 SV=1
Length = 328
Score = 132 bits (331), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 116/221 (52%), Gaps = 5/221 (2%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
ILAPM ++LP+R L ++ G L + MV++ I + + ++ PE P+ +Q
Sbjct: 15 ILAPMSGVTDLPFRRLVKQSGCGLVVSEMVASQAMIRENRQTLRMVECEPEQFPMAVQLA 74
Query: 212 GNDSKNLTEAAKLAEPHCDG-IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G + + EAAKL E IDIN GCP GH G+ L D L ++ + +AV
Sbjct: 75 GCEPDVMAEAAKLNEDRGAAIIDINFGCPVKKVVNGHAGSSLMRDEALAARILEATAKAV 134
Query: 271 QVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328
+PV+ K+R D + AR+ E G +L+ VHGRT +Q G A W I +V+
Sbjct: 135 TIPVTLKMRKGWDDSSLNAPRLARIAEECGIKLVTVHGRTREQ--FYNGTADWSFIRSVK 192
Query: 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
+A++IPV+ NG+I V+ LA++G GVM G P
Sbjct: 193 EAVSIPVVVNGDITSFDAVDRALAESGADGVMIGRGAYGRP 233
Score = 38.1 bits (87), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
ILAPM ++LP+R L ++ G L + MV++ I + + ++ PE P+ +Q
Sbjct: 15 ILAPMSGVTDLPFRRLVKQSGCGLVVSEMVASQAMIRENRQTLRMVECEPEQFPMAVQ 72
>sp|Q4UNJ4|DUS_RICFE Probable tRNA-dihydrouridine synthase OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=dus PE=3 SV=1
Length = 325
Score = 128 bits (322), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 139/267 (52%), Gaps = 20/267 (7%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM-STPEDRPL 206
S ILAPM D ++L +R L +R+G+ L + M+++ + K RQ + + D P
Sbjct: 10 SSNVILAPMSDITDLEFRKLVKRFGAGLVVSEMIASRAMVV--KSRQSMQKCAIVHDDPT 67
Query: 207 --IIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 263
+Q G + + EAAK+ E ID+N GCP G+ G+ L D L +
Sbjct: 68 SACVQLAGCEPNVIAEAAKMNEDMGAKIIDLNFGCPAKKVVGGYAGSALMRDEQLAAKIF 127
Query: 264 SSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
+ +AV++P++ K+R+ D N + A++ E +G Q++ VHGRT Q +G A W
Sbjct: 128 EATVKAVKIPITVKMRMGWDDNTKNAPDLAKIAESSGVQMVTVHGRTRCQ--FYSGNADW 185
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------T 373
+ I +V++A+ IPVIANG+I A + L ++G G+M G P L T
Sbjct: 186 DFIRSVKEAVKIPVIANGDITNFAKAKEALQKSGADGIMVGRGAYGKPWLVSQIAHYLKT 245
Query: 374 GQTRPAWELASEYLDLVAQ-YPVRLQY 399
G+ +PA +A E LD+V + Y L Y
Sbjct: 246 GEEKPAPSIA-EQLDIVTEHYNAILDY 271
>sp|Q92JQ6|DUS_RICCN Probable tRNA-dihydrouridine synthase OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=dus PE=3 SV=2
Length = 331
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/329 (29%), Positives = 159/329 (48%), Gaps = 33/329 (10%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK--LRQEILMSTPEDRP 205
S ILAPM ++L +R L +R+G+ L + MV++ I + + L++ +M +
Sbjct: 10 SSNIILAPMSGVTDLEFRRLVKRFGAGLVVSEMVASRAMIVESRQSLKKSAIMR-DDATS 68
Query: 206 LIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVS 264
+Q G + + EAAK+ E ID+N GCP G+ G+ L D L +
Sbjct: 69 ACVQLAGCEPNVIAEAAKMNEGMGAKIIDLNFGCPAKKVVGGYSGSALMKDEQLAAKIFE 128
Query: 265 SLRQAVQVPVSCKIRIYQDVNKTVE--YARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
+ +AV++PV+ K+R+ D N A++ E +G Q++ VHGRT Q +G A W+
Sbjct: 129 ATVEAVKLPVTVKMRMGWDDNTKNAPTLAKIAESSGVQMITVHGRTRCQ--FYSGNADWD 186
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TG 374
I +V++++ IPVIANG+I A + L ++G G+M G P L TG
Sbjct: 187 FIRSVKESVKIPVIANGDITNFAKAKEALQKSGADGIMVGRGAYGKPWLISQIDHYLKTG 246
Query: 375 QTRPAWELASEYLDLVAQ-YPVRLQY---------ARGHVFNMCHHLLTLPENSDVRLLV 424
+ + A +A E LD+V + Y L Y AR H+ + LP +++ R
Sbjct: 247 EEKSAPSIA-EQLDIVTEHYEAILDYYGESVGVPIARKHI---GWYSSGLPNSAEFR--- 299
Query: 425 GKTNHIKDLRKAVDMLRERFIDYHEGRKL 453
G N + D + + E + E KL
Sbjct: 300 GAVNLMNDPLAVKEKIAEFYTSVMETNKL 328
>sp|Q1RH84|DUS_RICBR Probable tRNA-dihydrouridine synthase OS=Rickettsia bellii (strain
RML369-C) GN=dus PE=3 SV=1
Length = 326
Score = 126 bits (317), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/258 (32%), Positives = 134/258 (51%), Gaps = 15/258 (5%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLR-QEILMSTPEDRPL 206
S ILAPM ++L +R L +R+G+ L + M+++ I + + Q+ + +
Sbjct: 10 SSNIILAPMSGVTDLEFRRLVKRFGAGLVVSEMIASRAMIVESRQSLQKCSIMQDDATSA 69
Query: 207 IIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
+Q G + + EAAK+ E ID+N GCP G+ G+ L D L + +
Sbjct: 70 CVQLAGCEPNVIAEAAKMNEDMGAKIIDLNFGCPAKKVVNGYSGSALMRDEGLAAKIFEA 129
Query: 266 LRQAVQVPVSCKIRI-YQDVNKTV-EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+AV++PV+ K+R+ + D K A++ ER+G Q++ VHGRT Q +G A WE
Sbjct: 130 AVKAVKIPVTVKMRMGWDDQTKNAPTLAKIAERSGIQMVTVHGRTRCQ--FYSGNADWEF 187
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQ 375
I V++A+ IPVIANG+I A + L ++ GVM G P L TG+
Sbjct: 188 IKNVKEAVKIPVIANGDITNFAKAKEALEKSSADGVMVGRGAYGKPWLISQIDHYLKTGE 247
Query: 376 TRPAWELASEYLDLVAQY 393
+PA + S+ LD+V ++
Sbjct: 248 EKPAPSIESQ-LDIVLEH 264
>sp|Q9HUW1|DUSB_PSEAE tRNA-dihydrouridine synthase B OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dusB
PE=3 SV=1
Length = 332
Score = 125 bits (315), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 120/226 (53%), Gaps = 5/226 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R ILAPM ++ P+R L RR G+ + + MV++ + + + + L+ ED P +Q
Sbjct: 14 RLILAPMAGVTDRPFRQLCRRLGAGMVVSEMVTSDVRLWNSRKSRLRLIHDGEDEPRSVQ 73
Query: 210 FCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ 268
G D L EAA+ E IDIN+GCP G+ L D L+ ++ ++ +
Sbjct: 74 IAGGDPAMLAEAAQRNVELGAQIIDINMGCPAKKVCNKAAGSALLRDEALVAEILDAVVR 133
Query: 269 AVQVPVSCKIRIY--QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326
AV VPV+ KIR +D V A++ E+AG Q LAVHGRT + + TG A +E I A
Sbjct: 134 AVDVPVTLKIRTGWDRDNRNGVTVAKLAEQAGIQALAVHGRT--RADLYTGEAEYETIAA 191
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
+++A++IPV ANG+I + QTGV ++ P +F
Sbjct: 192 IKQAVSIPVFANGDIDSPEKARKVIEQTGVDALLIGRAAQGRPWIF 237
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 32/259 (12%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
R ILAPM ++ P+R L RR G+ + + MV++ + + + + L+ ED P
Sbjct: 14 RLILAPMAGVTDRPFRQLCRRLGAGMVVSEMVTSDVRLWNSRKSRLRLIHDGEDEP---- 69
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYG---SHLCYTPMVSAHQFIADKKLRQEI 196
R++ G P + EL +++ G +C SA + D+ L EI
Sbjct: 70 RSVQIAGGDPAMLAEAAQRNVELGAQIIDINMGCPAKKVCNKAAGSA--LLRDEALVAEI 127
Query: 197 LMSTPE--DRPLIIQF---CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAY 251
L + D P+ ++ D++N AKLAE GI Q +A G A
Sbjct: 128 LDAVVRAVDVPVTLKIRTGWDRDNRNGVTVAKLAEQA--GI-------QALAVHGRTRAD 178
Query: 252 LQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLL----AVHGR 307
L +++++QAV +PV D++ + +++E+ G L A GR
Sbjct: 179 LYTGEAEYET-IAAIKQAVSIPVFAN----GDIDSPEKARKVIEQTGVDALLIGRAAQGR 233
Query: 308 TVDQRGMNTGLASWEHITA 326
R ++ L + EH+ A
Sbjct: 234 PWIFREIDHYLRTGEHLPA 252
>sp|Q9ZED2|DUS_RICPR Probable tRNA-dihydrouridine synthase OS=Rickettsia prowazekii
(strain Madrid E) GN=dus PE=3 SV=2
Length = 327
Score = 125 bits (315), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 159/327 (48%), Gaps = 31/327 (9%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI-ADKKLRQEILMSTPEDRPL 206
S ILAPM D ++L +R L +R+G+ L + M+++ I ++ Q+ + +
Sbjct: 10 SSNVILAPMSDVTDLEFRKLVKRFGAGLVVSEMIASRAMIMKSRQSMQKCAIMHDDPTSA 69
Query: 207 IIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
+Q G + + EAAK+ E ID+N GCP G+ G+ L D L + +
Sbjct: 70 CVQLAGCEPDVIAEAAKMNEDMGAKIIDLNFGCPAKKVVGGYAGSALMRDEQLAAKIFEA 129
Query: 266 LRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+AV++PV+ K+RI D N A++ +G Q++ VHGRT Q +G A+W+
Sbjct: 130 TVKAVKIPVTVKMRIGWDDNTRNAPTLAKIAANSGVQMVTVHGRTRCQ--FYSGNANWDF 187
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQ 375
I V++A+ IPVIANG+I A + L ++G G+M G P L TG+
Sbjct: 188 IRTVKEAVKIPVIANGDITNFAKAKEALQRSGADGIMVGRGVYGKPWLISQIAYYLKTGK 247
Query: 376 TRPAWELASEYLDLVAQ-YPVRLQY---------ARGHVFNMCHHLLTLPENSDVRLLVG 425
+PA +A E LD++ + Y + Y AR H+ + LP +++ R V
Sbjct: 248 EKPAPSIA-EQLDIITKHYDAIIDYYGKSVGVPIARKHIIWYSNG---LPSSAEFRCTV- 302
Query: 426 KTNHIKDLRKAVDMLRERFIDYHEGRK 452
N +KD + + E ++ + K
Sbjct: 303 --NLMKDPIAVKEKIAEFYMSVMDANK 327
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 78 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI 117
S ILAPM D ++L +R L +R+G+ L + M+++ I
Sbjct: 10 SSNVILAPMSDVTDLEFRKLVKRFGAGLVVSEMIASRAMI 49
>sp|Q55724|DUS1_SYNY3 Probable tRNA-dihydrouridine synthase 1 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=dus1 PE=3 SV=1
Length = 355
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/310 (33%), Positives = 159/310 (51%), Gaps = 28/310 (9%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSH-LCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
R + +P+ ++L +R L RRY + YT MVSA + + L Q ++ P + P+ I
Sbjct: 43 RVLQSPLSGVTDLVFRRLVRRYAPQAMLYTEMVSATEIHHLRTLPQ-VMEIDPRENPISI 101
Query: 209 QFCGNDSKNLTEAAKLAEPH-CDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSL 266
Q + EAA+ A +DIN+GCP + K+G G+ L + +V ++
Sbjct: 102 QLFDCRPDFMAEAAQKAVAQGAQSVDINMGCPVNKITKKGG-GSSLLRQPAVAEAIVKTV 160
Query: 267 RQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
AV VPV+ K R+ D + VE+A+ L+ AG Q+L +HGRT Q G N G A W+ I
Sbjct: 161 VAAVDVPVTVKTRLGWDDGEINIVEFAQRLQDAGAQMLTLHGRTRAQ-GYN-GRARWQWI 218
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQT 376
V++ALTIPVIANG+I + ACL +TG GVM + G+L P L TG+
Sbjct: 219 AKVKQALTIPVIANGDIFSVEAAIACLEETGADGVMCSRGSLGYPFLVGEIEHFFKTGEK 278
Query: 377 RPA------WELASEYLDLVAQYPVR--LQYARGHVFNMCHHLLTLPENSDVRLLVGKTN 428
R A A E+L ++ +Y + L AR H+ C P + +R + + N
Sbjct: 279 RKAPTVAEKLTCAQEHLQMLWEYKGQRGLFQARKHLAWYCKD---FPGAAALREQLFQIN 335
Query: 429 HIKDLRKAVD 438
+++ + +D
Sbjct: 336 SVQEGKDLLD 345
>sp|P37567|DUS1_BACSU Probable tRNA-dihydrouridine synthase 1 OS=Bacillus subtilis
(strain 168) GN=dus1 PE=3 SV=1
Length = 333
Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 119/224 (53%), Gaps = 6/224 (2%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
R +LAPM +RL + +G+ L MVS + + +L ++PL +Q
Sbjct: 12 RVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILYNNARTMGMLYIDEREKPLSLQ 71
Query: 210 FCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
G + L EAAK + + D IDIN+GCP + GA D + +VS++
Sbjct: 72 IFGGKKETLVEAAKFVDQNTTADIIDINMGCPVPKITKCDAGAKWLLDPDKIYEMVSAVV 131
Query: 268 QAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV PV+ K+R+ D + V+ A+ +ERAG + +A+HGRT Q M G A+W+ I
Sbjct: 132 DAVNKPVTVKMRMGWDEDHIFAVKNAQAVERAGGKAVALHGRTRVQ--MYEGTANWDIIK 189
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
V+++++IPVI NG+++ D + L +TGV GVM L NP
Sbjct: 190 EVKQSVSIPVIGNGDVKTPQDAKRMLDETGVDGVMIGRAALGNP 233
>sp|Q68XZ3|DUS_RICTY Probable tRNA-dihydrouridine synthase OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=dus PE=3 SV=1
Length = 327
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 146/302 (48%), Gaps = 26/302 (8%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI-ADKKLRQEILMSTPEDRPL 206
S ILAPM + ++L +R L +R+G+ L + M+++ I ++ Q+ + +
Sbjct: 10 SSNVILAPMSNITDLEFRKLVKRFGAGLVVSEMIASRAMIMKSRQSMQKCAIMHDDPTSA 69
Query: 207 IIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
+Q G + + +AAK+ E ID+N GCP G+ G+ L D L T + +
Sbjct: 70 CVQLAGCEPDVIADAAKMNEDMGAKIIDLNFGCPAKKVVGGYAGSALMRDERLATKIFEA 129
Query: 266 LRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323
+AV++PV+ K+R+ D N A + +G Q++ VHGRT Q +G A+W+
Sbjct: 130 TVKAVKIPVTVKMRMGWDDNTKNAPTLAVIAASSGVQMVTVHGRTRCQ--FYSGNANWDF 187
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQ 375
I V++A+ IPVIANG+I A + L ++G G+M G P L TG+
Sbjct: 188 IRVVKEAVKIPVIANGDITNFAKAKEALQKSGADGIMVGRGVYGKPWLISQIAYYLKTGK 247
Query: 376 TRPAWELASEYLDLVAQYPVRLQY---------ARGHVFNMCHHLLTLPENSDVRLLVGK 426
+PA +A + ++ Y + Y AR H+ + LP +++ R V
Sbjct: 248 EKPAPSIAEQLDIIIKHYDAIIDYYGKSVGVPIARKHII---WYSSGLPSSAEFRCAVNL 304
Query: 427 TN 428
N
Sbjct: 305 MN 306
>sp|Q8PCH1|DUSB_XANCP tRNA-dihydrouridine synthase B OS=Xanthomonas campestris pv.
campestris (strain ATCC 33913 / NCPPB 528 / LMG 568)
GN=dusB PE=3 SV=1
Length = 332
Score = 119 bits (297), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 118/235 (50%), Gaps = 7/235 (2%)
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPM-VSAHQFIADKKLRQEILMST 200
I P +P+ ILAPM ++ P+RLL +R G+ L + M +S +F +K + +
Sbjct: 3 IGPYTIAPKVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRKSLHRMDHAG 62
Query: 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 259
D P+ +Q G + + L EAA+ H IDIN+GCP G+ L D L+
Sbjct: 63 EPD-PISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGSALMRDEDLV 121
Query: 260 TNLVSSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
++S++ +AV VPV+ KIR D + AR+ + G LAVHGRT DQ TG
Sbjct: 122 ARILSAVVRAVDVPVTLKIRTGWDCDHRNGPTIARIAQDCGIAALAVHGRTRDQH--YTG 179
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
A + I ++ AL IPVIANG+I L TGV VM P +F
Sbjct: 180 TAEYATIAQIKAALQIPVIANGDIDSPQKAAQVLRDTGVDAVMIGRAAQGRPWIF 234
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 78 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPM-VSAHQFIADKK 121
+P+ ILAPM ++ P+RLL +R G+ L + M +S +F +K
Sbjct: 9 APKVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRK 53
>sp|Q8PP72|DUSB_XANAC tRNA-dihydrouridine synthase B OS=Xanthomonas axonopodis pv. citri
(strain 306) GN=dusB PE=3 SV=1
Length = 332
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/308 (31%), Positives = 143/308 (46%), Gaps = 27/308 (8%)
Query: 142 IFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPM-VSAHQFIADKKLRQEILMST 200
I P +P+ ILAPM ++ P+RLL +R G+ L + M +S +F +K + +
Sbjct: 3 IGPYSIAPKVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRKSLHRMDHAG 62
Query: 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 259
D P+ +Q G + + L EAA+ H IDIN+GCP G+ L D L+
Sbjct: 63 EPD-PISVQIAGTEPQQLAEAARYNVDHGAQLIDINMGCPAKKVCNAWAGSALMRDEELV 121
Query: 260 TNLVSSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
+++++ QAV VPV+ KIR D + AR+ + G LAVHGRT DQ TG
Sbjct: 122 ARILTAVVQAVNVPVTLKIRTGWDCDHRNGPTIARIAQDCGIAALAVHGRTRDQH--YTG 179
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF----- 372
A + I ++ AL IPV+ANG+I L +TG VM P +F
Sbjct: 180 SAEYATIAQIKAALQIPVVANGDIDSPQKAAQVLRETGADAVMIGRAAQGRPWIFGEVAH 239
Query: 373 ---TGQTRPAWELAS---------EYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDV 420
TG+ P LA E L P ++ AR H + + P+++D
Sbjct: 240 FLATGEVLPPPSLAFVRDTLLGHLEALHAFYGQPQGVRIARKH---LGWYAKDHPQSADF 296
Query: 421 RLLVGKTN 428
R +V +
Sbjct: 297 RAVVNRAE 304
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 78 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPM-VSAHQFIADKK 121
+P+ ILAPM ++ P+RLL +R G+ L + M +S +F +K
Sbjct: 9 APKVILAPMAGVTDKPFRLLCKRLGAGLAVSEMTISDPRFWGTRK 53
>sp|O67533|DUS_AQUAE Probable tRNA-dihydrouridine synthase OS=Aquifex aeolicus (strain
VF5) GN=dus PE=3 SV=1
Length = 316
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/314 (27%), Positives = 146/314 (46%), Gaps = 25/314 (7%)
Query: 152 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS----TPEDRPLI 207
ILAPM + +R L RR G+ YT ++SA LR I M T E+RP+
Sbjct: 9 ILAPMASYTHSAFRRLCRRLGADRTYTELISAVGV-----LRNGIPMKLAYFTEEERPIH 63
Query: 208 IQFCGNDSKNLTEAAKL--AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS 265
IQ G++ + + +A+ + E D IDIN GC R Y+ PL+ +V
Sbjct: 64 IQVFGSNPEEIAQASVVIAKELKPDFIDINFGCSVPKVLRNKAAGYMLQCPPLMGEVVKE 123
Query: 266 LRQAVQ---VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
+A++ +PVS KIR+ + ++ L++AG L+A+H RT Q G +G A W
Sbjct: 124 TVEALKPYGIPVSAKIRLGFEKDEVERIVEELQKAGVSLIAIHARTAKQ-GF-SGKALWH 181
Query: 323 HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG-------- 374
I +K ++P+I +G+++ D+E +T GVM L NP +F
Sbjct: 182 RIKEAKKVASVPIIGSGDVKSWRDIERMFEETECDGVMVGRAALSNPWIFKEFKEKRDIE 241
Query: 375 -QTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDL 433
+ + E L ++ +Y R + + L +P + +++ + + K+L
Sbjct: 242 VGLKERMDFILEELSMMTEYMSREKACAEIKSQIVQILKGVPNSRELKTYIVHAENCKEL 301
Query: 434 RKAVDMLRERFIDY 447
K ++ +ER + Y
Sbjct: 302 VKRIEEAKERELLY 315
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 82 ILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS----TPEDRPLI 137
ILAPM + +R L RR G+ YT ++SA LR I M T E+RP+
Sbjct: 9 ILAPMASYTHSAFRRLCRRLGADRTYTELISAVGV-----LRNGIPMKLAYFTEEERPIH 63
Query: 138 IQRTIFPRLGSPRFIL-APMVDASELPWRLLSRRYGSHLCYTPMV 181
IQ +F +P I A +V A EL + +G C P V
Sbjct: 64 IQ--VFG--SNPEEIAQASVVIAKELKPDFIDINFG---CSVPKV 101
>sp|Q9CLW3|DUSB_PASMU tRNA-dihydrouridine synthase B OS=Pasteurella multocida (strain
Pm70) GN=dusB PE=3 SV=2
Length = 332
Score = 112 bits (279), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 122/235 (51%), Gaps = 9/235 (3%)
Query: 145 RLGS----PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 200
R+GS R LAPM ++ P+R + YG+ L ++ M+S + + + + L
Sbjct: 2 RIGSYQLKNRIFLAPMAGITDQPFRRICTHYGAGLTFSEMMSTNPQVWHTEKSKLRLAHH 61
Query: 201 PEDRPLIIQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 259
E +Q G D + +AA++ E + IDIN+GCP R G+ L L+
Sbjct: 62 QEAGINAVQIAGCDPDEMAKAAQINVEYGAEIIDINMGCPAKKVNRKMAGSALLQYPDLV 121
Query: 260 TNLVSSLRQAVQVPVSCKIRIY--QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
+++ + ++V VPV+ KIR +D +E A++ E+ G Q L +HGRT + M G
Sbjct: 122 KQILNKVVKSVTVPVTLKIRTGWDKDNRNCLEIAKIAEQCGIQALTIHGRT--RSCMFEG 179
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
A +++I AV++ L+IP+IANG+I + L T +M G+L NP LF
Sbjct: 180 EAEYDNIKAVKEQLSIPIIANGDITSAEKAKYVLDYTNADAIMIGRGSLGNPWLF 234
>sp|P44965|DUSB_HAEIN tRNA-dihydrouridine synthase B OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusB PE=3 SV=1
Length = 330
Score = 110 bits (274), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 123/236 (52%), Gaps = 11/236 (4%)
Query: 145 RLGS----PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 200
R+GS R +LAPM ++ P+R L YG+ L ++ M+S + + + + ++ ++
Sbjct: 2 RIGSYQLRNRVLLAPMAGITDQPFRRLCAYYGAGLTFSEMMSTNPQVWHTE-KSKLRLAH 60
Query: 201 PEDRPL-IIQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL 258
ED L +Q G+D + +AA + E IDIN+GCP R G+ L L
Sbjct: 61 SEDLGLNAVQIAGSDPLEMAQAAAINVEYGAQIIDINMGCPAKKVNRKLAGSALLQFPDL 120
Query: 259 LTNLVSSLRQAVQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNT 316
+ ++ + AV VPV+ KIR D + V+ ++ E+ G Q L VHGRT + +
Sbjct: 121 VEKILREVVSAVNVPVTLKIRTGWDKSNRNCVQIGKIAEQCGIQALTVHGRT--RACLFE 178
Query: 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
G A +++I AV++A+ IPVIANG+I + L TG +M L NP LF
Sbjct: 179 GEAEYDNIKAVKQAIAIPVIANGDIDSARKAKFVLNYTGADAIMIGRAALGNPWLF 234
>sp|Q88DK5|DUSB_PSEPK tRNA-dihydrouridine synthase B OS=Pseudomonas putida (strain
KT2440) GN=dusB PE=3 SV=1
Length = 337
Score = 109 bits (272), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 128/245 (52%), Gaps = 17/245 (6%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI--ADKKLRQEILMSTPEDRPLII 208
ILAPM ++ P+R L +R G+ + + MVS+ + + K + I PE P +
Sbjct: 15 LILAPMAGVTDQPFRTLCQRLGAGMVVSEMVSSDMSLWNSRKSSLRRIHEGDPE--PRSV 72
Query: 209 QFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
Q G D++ + AAK E IDIN+GCP G+ L D L++ ++ ++
Sbjct: 73 QIAGGDAQMMAAAAKANVEAGAQIIDINMGCPAKKVCNKAAGSALLRDEALVSEILHAVV 132
Query: 268 QAVQVPVSCKIRIYQD-VNKT-VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV VPV+ KIR D NK + A++ E+AG Q LAVHGRT + + TG A ++ I
Sbjct: 133 SAVDVPVTLKIRTGWDRANKNGLNVAKIAEQAGIQALAVHGRT--RADLYTGEAEYDTIG 190
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTR 377
A+++A++IPV ANG+I A L TGV G++ P +F TG+
Sbjct: 191 AIKQAVSIPVFANGDITSPEKARAVLETTGVDGLLIGRAAQGRPWIFREIEHYLRTGEHL 250
Query: 378 PAWEL 382
PA +L
Sbjct: 251 PAPQL 255
>sp|Q87VS1|DUSB_PSESM tRNA-dihydrouridine synthase B OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=dusB PE=3 SV=1
Length = 337
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 152/312 (48%), Gaps = 24/312 (7%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
ILAPM ++ P+R L R+ G+ L + MV++ + + + + ++ + P +Q
Sbjct: 15 LILAPMAGVTDQPFRQLCRQLGAGLVVSEMVTSDMSLWNSRKSRLRMIHAGDPEPRSVQI 74
Query: 211 CGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G D++ + +AA+ E IDIN+GCP G+ L D L+ +++ ++ A
Sbjct: 75 AGGDAQMMADAARANVELGAQIIDINMGCPAKKVCNKAAGSALLKDEQLVNDILQAVVAA 134
Query: 270 VQVPVSCKIRIY--QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
V VPV+ KIR +D + A++ E+AG Q LAVHGRT + + TG A ++ I +
Sbjct: 135 VDVPVTLKIRTGWDRDNRNGLTVAKIAEQAGIQALAVHGRT--RADLYTGEAEYDTIAMI 192
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQTRPA 379
++A++IPV ANG+I L TG G++ P +F TG+T PA
Sbjct: 193 KQAVSIPVFANGDIDSPEKARHVLQATGADGLLIGRAAQGRPWIFREIEHYLLTGKTLPA 252
Query: 380 WELASEYLDLVAQYPVRLQYARGHVFN-------MCHHLLTLPENSDVRLLVGKTNHIKD 432
+ +SE ++ ++ L G V + +L TLP + R L N ++D
Sbjct: 253 LQ-SSEVERILLEHLAALHVFYGDVMGVRIARKHVGWYLATLPGAREFRALF---NRLED 308
Query: 433 LRKAVDMLRERF 444
+RE F
Sbjct: 309 TEAQCANVREFF 320
>sp|Q7VNP2|DUSB_HAEDU tRNA-dihydrouridine synthase B OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusB PE=3 SV=1
Length = 320
Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 116/228 (50%), Gaps = 5/228 (2%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLI 207
+ R LAPM ++ P+R L + G+ L ++ M+S + + + + L E
Sbjct: 9 NSRIFLAPMAGITDQPFRRLCSQLGAGLTFSEMMSTNPDVWHTEKSRLRLAHHAEIGINA 68
Query: 208 IQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSL 266
+Q G++ + EAAK+ + IDIN+GCP + G+ L + L+ ++ ++
Sbjct: 69 VQIAGSEPTEIAEAAKINVAYGAQIIDINMGCPAKKVNKKMAGSALLREPQLVARILDAV 128
Query: 267 RQAVQVPVSCKIRIYQDV--NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
AV VPV+ KIR D ++ A++ E+AG L +HGRT D + G A +E I
Sbjct: 129 VNAVDVPVTLKIRTGWDKTHKNFLQIAKIAEKAGISALTIHGRTRD--CLFNGQAEYESI 186
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
AV++A+ +P+IANG+I + L TG VM G+ P LF
Sbjct: 187 KAVKQAVFMPIIANGDITSPQKAKDVLDYTGADAVMIGRGSFGRPWLF 234
>sp|Q87KU1|DUSB_VIBPA tRNA-dihydrouridine synthase B OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=dusB PE=3 SV=2
Length = 322
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 116/225 (51%), Gaps = 5/225 (2%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
I+APM ++ P+R L RYG+ + + M+SA+ + ++ ++ E +Q
Sbjct: 12 LIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSANPKLWKTSKSKQRMVHEGESGIRSVQI 71
Query: 211 CGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G+D + + +AA+ + E IDIN+GCP + G+ L ++ ++ ++ A
Sbjct: 72 AGSDPQLMADAAQFSVENGAQIIDINMGCPAKKVNKKLAGSALLQYPTIIEEILKAVVNA 131
Query: 270 VQVPVSCKIRIYQDVNKT--VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
V VPV+ K R D + V+ A++ E G Q LA+HGRT + M G A ++ I AV
Sbjct: 132 VDVPVTLKTRTGWDTDNKNCVQIAKLAEDCGIQALALHGRT--KACMYKGEAEYDSIKAV 189
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
++A++IPVIANG+I + L TG +M P +F
Sbjct: 190 KEAISIPVIANGDIDSPEKAKFVLEYTGADALMIGRPAQGRPWIF 234
>sp|Q08111|DUS_RHOCB Probable tRNA-dihydrouridine synthase OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=dus PE=3
SV=1
Length = 324
Score = 102 bits (254), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 86/257 (33%), Positives = 133/257 (51%), Gaps = 15/257 (5%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK-KLRQEILMSTPEDRPLI 207
P +LAPM ++LP+R + R+G+ L + MV++ + + K +R + P
Sbjct: 12 PPVLLAPMAGITDLPFRRMVARFGAGLVVSEMVASGEMLTAKPSVRAKAQAELTAGLPTS 71
Query: 208 IQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSL 266
+Q G ++ + EAAK+ A+ + IDIN+GCP G GA L + L+ ++
Sbjct: 72 VQLAGREAAPMAEAAKIVADMGAEIIDINMGCPAKKVTGGLSGAALMRNPDHALRLIEAV 131
Query: 267 RQAVQVPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
AV +PV+ K+R+ D ++ E A E AG +++ +HGRT Q TG A W I
Sbjct: 132 VGAVDLPVTLKMRLGWDEDQLNAAEIAARAEAAGVKMIVIHGRTRMQ--FYTGAADWRAI 189
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP--------ALFTGQT 376
AVR A+++PV+ANG+I A L Q+G AGVM G P ALF G+
Sbjct: 190 AAVRAAVSVPVVANGDITDAASARRALDQSGAAGVMVGRGAQGAPWRLAQIAAALF-GKA 248
Query: 377 RPAWELASEYLDLVAQY 393
P SE+ D V+++
Sbjct: 249 DPKLPSGSEFSDFVSEH 265
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK 120
P +LAPM ++LP+R + R+G+ L + MV++ + + K
Sbjct: 12 PPVLLAPMAGITDLPFRRMVARFGAGLVVSEMVASGEMLTAK 53
>sp|O52539|DUSB_ERWCA tRNA-dihydrouridine synthase B OS=Erwinia carotovora GN=dusB PE=3
SV=2
Length = 321
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 114/228 (50%), Gaps = 9/228 (3%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI--ADKKLRQEILMSTPEDRPLI 207
R I APM S+ P+R L G+ + + M+S++ + +DK + + P R
Sbjct: 11 RLIAAPMAGISDRPFRALCHAMGAGMTVSEMLSSNPEVWRSDKSRLRMVHSDEPGIRA-- 68
Query: 208 IQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSL 266
+Q G D + A ++ A+ IDIN+GCP R G+ L L+ ++S++
Sbjct: 69 VQIAGCDPDEMAAARRINADSGAQIIDINMGCPAKKVNRKMAGSALLQYPDLVKQILSTV 128
Query: 267 RQAVQVPVSCKIRI--YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
+AV VPV+ KIR + VE A++ E G Q L +HGRT + + G A ++ I
Sbjct: 129 VKAVDVPVTLKIRTGWAPEHRNCVEIAKLAEDCGIQALTIHGRT--RACLFNGFAEYDSI 186
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
AV++A++IP+IANG+I A L TG +M P +F
Sbjct: 187 RAVKQAVSIPIIANGDITDPHKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|Q7ZWS1|DUS3L_XENLA tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Xenopus laevis
GN=dus3l PE=2 SV=1
Length = 640
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 122/252 (48%), Gaps = 12/252 (4%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ LAP+ LP+R + +R G+ + M + + +L + +Q
Sbjct: 296 KLYLAPLTTCGNLPFRRICKRLGADITCGEMAMCTNLLQGQPSEWALLKRHHSEDIFGVQ 355
Query: 210 FCGNDSKNLTEAAKLAEP--HCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSL 266
G +T+ A+L D +DIN+GCP +V K+G G L + +V +
Sbjct: 356 LEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGG-GCGLMNRTNKFEQIVKGM 414
Query: 267 RQAVQVPVSCKIR--IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
+ VP++ KIR + + VN + L G L+ +HGR+ +QR T LA+WE+I
Sbjct: 415 NSVLDVPLTVKIRTGVQEKVNIAHKLIPNLRDWGVSLVTLHGRSREQR--YTKLANWEYI 472
Query: 325 TAVRK-ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG-QTRPAWEL 382
K A +P+ NG+I D L QTGVAGVM A G L+ P LFT + + W++
Sbjct: 473 DQCAKIASPVPLFGNGDIISYEDANRAL-QTGVAGVMLARGALFKPWLFTEIKEQRHWDI 531
Query: 383 AS-EYLDLVAQY 393
+S E D++ +
Sbjct: 532 SSTERFDILKDF 543
>sp|P44606|DUSC_HAEIN tRNA-dihydrouridine synthase C OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusC PE=3 SV=1
Length = 310
Score = 99.4 bits (246), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 111/237 (46%), Gaps = 20/237 (8%)
Query: 150 RFILAPMVDASE-LPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS--------- 199
R ILAPM + LL+ LC T V + D+ L +++
Sbjct: 2 RVILAPMQGVLDPFVRELLTEVNDYDLCITEFVR----VVDQLLPEKVFYRLCPELKNQG 57
Query: 200 -TPEDRPLIIQFCGNDSKNLTE-AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
T P+ +Q G K L E A + + GID+N GCP + GA L
Sbjct: 58 FTSSGTPVRVQLLGQHPKCLAENAIRAIDLGSHGIDLNCGCPSKTVNGSNGGAALLKQPE 117
Query: 258 LLTNLVSSLRQAV--QVPVSCKIRI-YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314
L+ +LR+AV + PVS K+R+ + D+++ E A +E+ G + VHGRT G
Sbjct: 118 LIYRATQALRRAVPSEFPVSVKVRLGWDDISQAFEIADAVEQGGATEITVHGRT-KADGY 176
Query: 315 NTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371
+W+ I+ VR+ L+IPVIANG I D + CL+QTG +M G L P L
Sbjct: 177 RADRINWKKISEVRERLSIPVIANGEIWHWQDGQDCLSQTGCQDLMVGRGALNIPNL 233
>sp|Q3KRC5|DUS3L_RAT tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Rattus
norvegicus GN=Dus3l PE=2 SV=1
Length = 640
Score = 99.4 bits (246), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 123/254 (48%), Gaps = 12/254 (4%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLI 207
S + LAP+ LP+R + +R+G+ + M + + +L P +
Sbjct: 294 SGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAMCTNLLQGQMSEWALLKRHPCEDIFG 353
Query: 208 IQFCGNDSKNLTEAAKLAEP--HCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVS 264
+Q G +T+ A+L D +DIN+GCP +V K+G G L + +V
Sbjct: 354 VQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGG-GCALMNRSAKFQQIVR 412
Query: 265 SLRQAVQVPVSCKIR--IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
+ + + VP++ K+R + + V+ L G L+ +HGR+ +QR T LA W
Sbjct: 413 GMNEVLDVPLTVKMRTGVQERVSLAHRLLPELRNWGVALVTLHGRSREQR--YTRLADWP 470
Query: 323 HITAVRKALT-IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG-QTRPAW 380
+I K + +P+ NG+I D C QTGVAG+M A G L P LFT + + W
Sbjct: 471 YIEQCAKVASPMPLFGNGDILSFEDAN-CAMQTGVAGIMVARGALLKPWLFTEIKEQRHW 529
Query: 381 EL-ASEYLDLVAQY 393
++ +SE LD++ +
Sbjct: 530 DISSSERLDILRDF 543
>sp|P0ABT5|DUSB_ECOLI tRNA-dihydrouridine synthase B OS=Escherichia coli (strain K12)
GN=dusB PE=3 SV=1
Length = 321
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 9/228 (3%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI--ADKKLRQEILMSTPEDRPLI 207
R I APM ++ P+R L G+ L + M+S++ + +DK + + + P R
Sbjct: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR--T 68
Query: 208 IQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSL 266
+Q G+D K + +AA++ E IDIN+GCP R G+ L ++ ++++ +
Sbjct: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128
Query: 267 RQAVQVPVSCKIRI--YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
AV VPV+ KIR + E A++ E G Q L +HGRT + + G A ++ I
Sbjct: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRT--RACLFNGEAEYDSI 186
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
AV++ ++IPVIANG+I A L TG +M P +F
Sbjct: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|P0ABT6|DUSB_ECOL6 tRNA-dihydrouridine synthase B OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=dusB PE=3 SV=1
Length = 321
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 9/228 (3%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI--ADKKLRQEILMSTPEDRPLI 207
R I APM ++ P+R L G+ L + M+S++ + +DK + + + P R
Sbjct: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR--T 68
Query: 208 IQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSL 266
+Q G+D K + +AA++ E IDIN+GCP R G+ L ++ ++++ +
Sbjct: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128
Query: 267 RQAVQVPVSCKIRI--YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
AV VPV+ KIR + E A++ E G Q L +HGRT + + G A ++ I
Sbjct: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRT--RACLFNGEAEYDSI 186
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
AV++ ++IPVIANG+I A L TG +M P +F
Sbjct: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|P0ABT7|DUSB_ECO57 tRNA-dihydrouridine synthase B OS=Escherichia coli O157:H7 GN=dusB
PE=3 SV=1
Length = 321
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 115/228 (50%), Gaps = 9/228 (3%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI--ADKKLRQEILMSTPEDRPLI 207
R I APM ++ P+R L G+ L + M+S++ + +DK + + + P R
Sbjct: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIR--T 68
Query: 208 IQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSL 266
+Q G+D K + +AA++ E IDIN+GCP R G+ L ++ ++++ +
Sbjct: 69 VQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEV 128
Query: 267 RQAVQVPVSCKIRI--YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
AV VPV+ KIR + E A++ E G Q L +HGRT + + G A ++ I
Sbjct: 129 VNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRT--RACLFNGEAEYDSI 186
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
AV++ ++IPVIANG+I A L TG +M P +F
Sbjct: 187 RAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|O68273|DUSC_CUPNH tRNA-dihydrouridine synthase C OS=Cupriavidus necator (strain ATCC
17699 / H16 / DSM 428 / Stanier 337) GN=dusC PE=3 SV=2
Length = 322
Score = 99.0 bits (245), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 116/236 (49%), Gaps = 19/236 (8%)
Query: 150 RFILAPMVDASELPWR-LLSRRYGSHLCYTPMVSAHQFIADKKLRQ----EILMS--TPE 202
R LAPM ++ R +L+ G C + V + ++ + EIL T
Sbjct: 3 RLFLAPMEGLADYVLRDVLTDTGGYDGCVSEFVRVTGSLLPARVYERETPEILAGGYTRS 62
Query: 203 DRPLIIQFCGND----SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL 258
P++IQ G+D ++N AA L+ PH GID+N GCP V R GA L + L
Sbjct: 63 GTPMVIQLLGSDPEWLARNAAYAATLS-PH--GIDLNFGCPAKVVNRHGGGAMLLTNPEL 119
Query: 259 LTNLVSSLRQAV--QVPVSCKIRI-YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315
L +V+S+R AV + V+ K+R+ D + ++ A L G L VH RT D
Sbjct: 120 LNRIVASVRAAVPAHIAVTAKMRLGVSDASLAIDCATALAEGGAASLVVHARTRDHGYRP 179
Query: 316 TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371
A W+ I + A+ +PVIANG++ +AD E C A +G A VM G + +P L
Sbjct: 180 P--AHWDWIARIAAAVDVPVIANGDVWTVADWERCRAVSGCADVMIGRGAVSDPFL 233
>sp|O52533|DUSB_PROVU tRNA-dihydrouridine synthase B OS=Proteus vulgaris GN=dusB PE=3
SV=2
Length = 323
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 112/225 (49%), Gaps = 5/225 (2%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQF 210
I APM ++ P+R L G+ + + M+S++ + + ++ + E +Q
Sbjct: 12 LIAAPMAGVTDRPFRSLCYDMGAGMTVSEMLSSNPQVWQTDKSRLRMVHSDELGIRSVQI 71
Query: 211 CGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G+D ++ AAK+ A+ IDIN+GCP + G+ L L+ ++S++ A
Sbjct: 72 AGSDPVDMAAAAKINADSGAQIIDINMGCPAKKVNKKLAGSALLRHPDLVAEILSAVVNA 131
Query: 270 VQVPVSCKIRI--YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
V VPV+ KIR D VE A++ ER G Q L +HGRT + + G A ++ I V
Sbjct: 132 VDVPVTLKIRTGWSPDERNCVEIAKLAERCGIQALTIHGRT--RECLFKGEAEYDSIRTV 189
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
++ ++IP+IANG+I A L TG +M P +F
Sbjct: 190 KQNVSIPIIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|Q8Z5B2|DUSC_SALTI tRNA-dihydrouridine synthase C OS=Salmonella typhi GN=dusC PE=3
SV=1
Length = 312
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 113/235 (48%), Gaps = 16/235 (6%)
Query: 150 RFILAPM---VDASELPWRLLSRRYGSHLCYTPMVSA-HQFIADKKLRQ---EILMS--T 200
R +LAPM +DA L LL+ LC T V Q + K + E+L + T
Sbjct: 2 RVLLAPMEGVLDA--LVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELLHASRT 59
Query: 201 PEDRPLIIQFCGNDSKNLTE-AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 259
P P+ IQ G + L E AA+ G+D+N GCP V GA L D L+
Sbjct: 60 PSGTPVRIQLLGQHPQWLAENAARATALGSYGVDLNCGCPSKVVNGSGGGATLLTDPELI 119
Query: 260 TNLVSSLRQAV--QVPVSCKIRIYQDV-NKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
++R AV +PV+ K+R+ D ++ E A +++AG L VHGRT Q G
Sbjct: 120 YQGAKAMRAAVPSHLPVTVKVRLGWDSGDRKFEIADAVQQAGASELVVHGRTKAQ-GYRA 178
Query: 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371
W+ I +R+ LTIPVIANG I +AC+A +G VM G L P L
Sbjct: 179 EHIDWQAIGEIRQRLTIPVIANGEIWDWQSAQACMATSGCDAVMIGRGALNIPNL 233
>sp|Q8ZNM4|DUSC_SALTY tRNA-dihydrouridine synthase C OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=dusC PE=3 SV=1
Length = 312
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 109/235 (46%), Gaps = 16/235 (6%)
Query: 150 RFILAPM---VDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEI------LMST 200
R +LAPM +DA L LL+ LC T V + K+ I T
Sbjct: 2 RVLLAPMEGVLDA--LVRELLTEVNDYDLCITEFVRVVDQLLPVKVFHRICPELHHASRT 59
Query: 201 PEDRPLIIQFCGNDSKNLTE-AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 259
P P+ IQ G + L E AA+ G+D+N GCP V GA L D L+
Sbjct: 60 PSGTPVRIQLLGQHPQWLAENAARATALGSYGVDLNCGCPSKVVNGSGGGATLLKDPELI 119
Query: 260 TNLVSSLRQAV--QVPVSCKIRIYQDV-NKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
++R AV +PV+ K+R+ D ++ E A +++AG L VHGRT Q G
Sbjct: 120 YQGAKAMRAAVPSHLPVTVKVRLGWDSGDRKFEIADAVQQAGASELVVHGRTKAQ-GYRA 178
Query: 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371
W+ I +R+ LTIPVIANG I +AC+A +G VM G L P L
Sbjct: 179 EHIDWQAIGEIRQRLTIPVIANGEILDWQSAQACMATSGCDAVMIGRGALNIPNL 233
>sp|P0A2R6|DUSB_SALTY tRNA-dihydrouridine synthase B OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=dusB PE=3 SV=1
Length = 321
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 9/228 (3%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI--ADKKLRQEILMSTPEDRPLI 207
R I APM ++ P+R L G+ L + M+S++ + +DK + + + P R
Sbjct: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHVDEPGIR--T 68
Query: 208 IQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSL 266
+Q G+D + +AA++ E IDIN+GCP R G+ L L+ +++ +
Sbjct: 69 VQIAGSDPVEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILIGV 128
Query: 267 RQAVQVPVSCKIRI--YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
AV VPV+ KIR + VE A++ E G Q L +HGRT + + G A ++ I
Sbjct: 129 VNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRT--RACLFNGEAEYDSI 186
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
AV++ ++IP+IANG+I A L TG +M P +F
Sbjct: 187 RAVKQKVSIPIIANGDITNPHKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|P0A2R7|DUSB_SALTI tRNA-dihydrouridine synthase B OS=Salmonella typhi GN=dusB PE=3
SV=1
Length = 321
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 114/228 (50%), Gaps = 9/228 (3%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI--ADKKLRQEILMSTPEDRPLI 207
R I APM ++ P+R L G+ L + M+S++ + +DK + + + P R
Sbjct: 11 RLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHVDEPGIR--T 68
Query: 208 IQFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSL 266
+Q G+D + +AA++ E IDIN+GCP R G+ L L+ +++ +
Sbjct: 69 VQIAGSDPVEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILIGV 128
Query: 267 RQAVQVPVSCKIRI--YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
AV VPV+ KIR + VE A++ E G Q L +HGRT + + G A ++ I
Sbjct: 129 VNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRT--RACLFNGEAEYDSI 186
Query: 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
AV++ ++IP+IANG+I A L TG +M P +F
Sbjct: 187 RAVKQKVSIPIIANGDITNPHKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|Q7VKU5|DUSC_HAEDU tRNA-dihydrouridine synthase C OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusC PE=3 SV=1
Length = 325
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 137/310 (44%), Gaps = 27/310 (8%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSH-LCYTPMVSA-HQFIADK---KLRQEILMS--TP 201
PR +LAPM + R L Y + LC + V Q + K +L E+L T
Sbjct: 6 PRIMLAPMQGVLDPFMRKLLTAYNDYDLCVSEFVRVVDQRLPKKTFYRLAPELLQGGLTD 65
Query: 202 EDRPLIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
P+ +Q G + L E A+LA E GID N GCP H GA L D L+
Sbjct: 66 SGTPIRVQLLGQYPQWLAENAQLAIELGSYGIDFNCGCPSKTVNGSHGGAALLKDPELIY 125
Query: 261 NLVSSLRQAV--QVPVSCKIRIYQD-VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317
++R+AV PVS K+R+ D ++ E A +++AG + VHGRT Q G
Sbjct: 126 CATKAIREAVPKAQPVSVKMRLGWDCASQCFEIADAIQQAGADEITVHGRT-KQDGYRAE 184
Query: 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT---- 373
+W+ I +++ L IPVIANG I + C T G+M G L P L
Sbjct: 185 RINWQAIGQIQQRLNIPVIANGEILDFNSAQKCREITACCGLMIGRGALNTPNLSKVIKY 244
Query: 374 GQTRPAWELASEYLDLVAQY---PVRLQYARGHVFNMCHHLLTL----PENSDVRLLVGK 426
+ AW SE L L+ +Y P HV + L L PE D+ +V K
Sbjct: 245 NVAKMAW---SEVLQLLYEYVNMPNERDSGFYHVARIKQWLHYLDKAYPEAVDLFQIV-K 300
Query: 427 TNHIKDLRKA 436
T H D KA
Sbjct: 301 TEHSYDGVKA 310
>sp|Q8ZAX7|DUSB_YERPE tRNA-dihydrouridine synthase B OS=Yersinia pestis GN=dusB PE=3 SV=1
Length = 321
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 111/227 (48%), Gaps = 9/227 (3%)
Query: 151 FILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFI--ADKKLRQEILMSTPEDRPLII 208
I APM ++ P+R L G+ + + M+S++ + DK + + + P R +
Sbjct: 12 LIAAPMAGITDRPFRALCHGMGAGMAVSEMLSSNPEVWRTDKSRLRMVHVDEPGIRN--V 69
Query: 209 QFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
Q GND + AA++ IDIN+GCP R G+ L L+ ++S++
Sbjct: 70 QIAGNDPDEMAAAARINVASGAQIIDINMGCPAKKVNRKLAGSALLQHPDLVKQILSAVV 129
Query: 268 QAVQVPVSCKIRI--YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325
AV VPV+ KIR + +E A++ E G Q L +HGRT + + G A ++ I
Sbjct: 130 NAVDVPVTLKIRTGWSPEHRNCIEIAQLAENCGIQALTIHGRT--RSCLFNGEAEYDSIR 187
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372
AV++ ++IPVIANG+I A L TG +M P +F
Sbjct: 188 AVKQTVSIPVIANGDITDPHKARAVLDYTGADALMIGRAAQGRPWIF 234
>sp|Q91XI1|DUS3L_MOUSE tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Mus musculus
GN=Dus3l PE=2 SV=1
Length = 637
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 122/254 (48%), Gaps = 12/254 (4%)
Query: 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLI 207
S + LAP+ LP+R + +R+G+ + M + + +L P +
Sbjct: 291 SGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHPCEDIFG 350
Query: 208 IQFCGNDSKNLTEAAKLAEP--HCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVS 264
+Q G +T+ A+L D +DIN+GCP +V K+G G L + +V
Sbjct: 351 VQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGG-GCALMNRSAKFQQIVR 409
Query: 265 SLRQAVQVPVSCKIR--IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWE 322
+ + VP++ K+R + + V+ L G L+ +HGR+ +QR T LA W
Sbjct: 410 GVNGVLDVPLTVKMRTGVQERVSLAHRLLPELRDWGVALVTLHGRSREQR--YTRLADWP 467
Query: 323 HITAVRK-ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG-QTRPAW 380
+I K A +P+ NG+I D C QTGVAG+M A G L P LFT + + W
Sbjct: 468 YIEQCAKVASPMPLFGNGDILSFEDAN-CAMQTGVAGIMVARGALLKPWLFTEIKEQRHW 526
Query: 381 EL-ASEYLDLVAQY 393
++ +SE LD++ +
Sbjct: 527 DISSSERLDILRDF 540
>sp|P72872|DUS2_SYNY3 Probable tRNA-dihydrouridine synthase 2 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=dus2 PE=3 SV=1
Length = 334
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 121/244 (49%), Gaps = 23/244 (9%)
Query: 153 LAPMVDASELPWRLLSRRYGSH-LCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC 211
+APM+D ++ +R R+ H L YT M++A + RQ +L +PE++P+ +Q
Sbjct: 15 VAPMMDHTDRHFRYFLRQLTRHTLLYTEMITAQAILHGD--RQRLLNFSPEEKPVALQLG 72
Query: 212 GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270
G+D + L E A++ + D I++N+GCP + G++GA L L+ VS++++AV
Sbjct: 73 GDDPQLLAECARIGQDWGYDEINLNVGCPSDRVQSGNFGACLMAQPDLVAQCVSAMQKAV 132
Query: 271 QVPVSCKIRI-------YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA---- 319
++PV+ K RI Y+D+ V + ++ AGCQ VH R +G++
Sbjct: 133 EIPVTVKHRIGIDHRDSYEDL---VHFVEIVANAGCQRFTVHARKAWLQGLSPKENRTIP 189
Query: 320 --SWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT 376
+E + ++K + + NG I ++ L+ V VM NP LF
Sbjct: 190 PLRYEDVYQLKKDFPQLLIEINGGITQTEQIQQHLSH--VDAVMVGRAAYENPYLFATVD 247
Query: 377 RPAW 380
R +
Sbjct: 248 RDIY 251
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 83 LAPMVDASELPWRLLSRRYGSH-LCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+APM+D ++ +R R+ H L YT M++A + RQ +L +PE++P+ +Q
Sbjct: 15 VAPMMDHTDRHFRYFLRQLTRHTLLYTEMITAQAILHGD--RQRLLNFSPEEKPVALQ 70
>sp|Q96G46|DUS3L_HUMAN tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Homo sapiens
GN=DUS3L PE=1 SV=2
Length = 650
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 122/252 (48%), Gaps = 12/252 (4%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ LAP+ LP+R + +R+G+ + M + + +L + +Q
Sbjct: 306 KLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHQCEDIFGVQ 365
Query: 210 FCGNDSKNLTEAAKLAEP--HCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSL 266
G +T+ A+L D +DIN+GCP +V K+G G L + +V +
Sbjct: 366 LEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGG-GCALMNRSTKFQQIVRGM 424
Query: 267 RQAVQVPVSCKIR--IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324
Q + VP++ KIR + + VN L G L+ +HGR+ +QR T LA W++I
Sbjct: 425 NQVLDVPLTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQR--YTKLADWQYI 482
Query: 325 -TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG-QTRPAWEL 382
V+ A +P+ NG+I D + QTGV G+M A G L P LFT + + W++
Sbjct: 483 EECVQAASPMPLFGNGDILSFEDANRAM-QTGVTGIMIARGALLKPWLFTEIKEQRHWDI 541
Query: 383 -ASEYLDLVAQY 393
+SE LD++ +
Sbjct: 542 SSSERLDILRDF 553
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187,701,588
Number of Sequences: 539616
Number of extensions: 7971905
Number of successful extensions: 18752
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 189
Number of HSP's that attempted gapping in prelim test: 18243
Number of HSP's gapped (non-prelim): 430
length of query: 487
length of database: 191,569,459
effective HSP length: 121
effective length of query: 366
effective length of database: 126,275,923
effective search space: 46216987818
effective search space used: 46216987818
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)