Query psy7343
Match_columns 487
No_of_seqs 514 out of 3641
Neff 7.3
Searched_HMMs 46136
Date Sat Aug 17 00:19:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2335|consensus 100.0 9.3E-62 2E-66 480.3 28.0 300 70-441 10-314 (358)
2 COG0042 tRNA-dihydrouridine sy 100.0 2.2E-55 4.7E-60 444.9 28.7 291 78-443 10-320 (323)
3 PRK10550 tRNA-dihydrouridine s 100.0 1.8E-51 4E-56 414.7 28.5 287 150-441 2-311 (312)
4 PF01207 Dus: Dihydrouridine s 100.0 1.5E-51 3.3E-56 416.0 19.6 282 152-438 1-302 (309)
5 PRK10415 tRNA-dihydrouridine s 100.0 3.2E-50 6.9E-55 408.2 27.6 290 148-442 9-318 (321)
6 TIGR00742 yjbN tRNA dihydrouri 100.0 6.2E-50 1.4E-54 404.3 25.2 284 150-441 2-313 (318)
7 TIGR00737 nifR3_yhdG putative 100.0 8.3E-47 1.8E-51 383.9 28.3 290 148-442 7-316 (319)
8 PRK11815 tRNA-dihydrouridine s 100.0 6.5E-46 1.4E-50 378.5 25.1 276 147-430 9-311 (333)
9 cd02801 DUS_like_FMN Dihydrour 100.0 1.5E-41 3.2E-46 329.6 21.6 224 80-375 1-226 (231)
10 KOG2333|consensus 100.0 3.7E-37 8.1E-42 311.1 22.5 258 78-407 264-543 (614)
11 cd02911 arch_FMN Archeal FMN-b 100.0 1.3E-34 2.8E-39 281.1 17.9 213 150-375 1-231 (233)
12 KOG2334|consensus 100.0 4.5E-32 9.7E-37 271.4 18.0 265 70-395 6-276 (477)
13 TIGR00736 nifR3_rel_arch TIM-b 100.0 5.3E-30 1.2E-34 246.7 19.7 161 201-368 65-226 (231)
14 TIGR01037 pyrD_sub1_fam dihydr 100.0 1.3E-28 2.8E-33 248.5 22.5 239 148-401 11-296 (300)
15 PF01207 Dus: Dihydrouridine s 100.0 6.2E-31 1.4E-35 265.9 3.5 207 82-314 1-221 (309)
16 PRK10550 tRNA-dihydrouridine s 100.0 1.9E-29 4.1E-34 254.7 9.9 205 80-311 2-229 (312)
17 TIGR00742 yjbN tRNA dihydrouri 100.0 6.9E-29 1.5E-33 251.1 9.1 208 80-311 2-228 (318)
18 PRK10415 tRNA-dihydrouridine s 99.9 3.3E-28 7.2E-33 247.2 9.3 207 78-311 9-229 (321)
19 cd02940 DHPD_FMN Dihydropyrimi 99.9 4.5E-26 9.8E-31 229.8 17.3 192 176-374 73-294 (299)
20 cd04740 DHOD_1B_like Dihydroor 99.9 4.1E-25 9E-30 222.6 22.5 240 148-401 10-293 (296)
21 PRK07259 dihydroorotate dehydr 99.9 1.1E-23 2.4E-28 212.7 24.3 179 202-394 90-288 (301)
22 PRK11815 tRNA-dihydrouridine s 99.9 1.5E-25 3.3E-30 228.8 9.2 208 78-309 10-236 (333)
23 TIGR00737 nifR3_yhdG putative 99.9 2.5E-25 5.4E-30 226.4 10.4 209 78-309 7-225 (319)
24 PRK08318 dihydropyrimidine deh 99.9 4.6E-24 1E-28 225.0 19.7 179 203-394 99-308 (420)
25 cd04734 OYE_like_3_FMN Old yel 99.9 3.1E-23 6.8E-28 212.7 21.0 162 215-376 140-329 (343)
26 cd02810 DHOD_DHPD_FMN Dihydroo 99.9 3.3E-23 7.1E-28 208.0 18.9 168 202-375 97-286 (289)
27 cd04741 DHOD_1A_like Dihydroor 99.9 1.9E-22 4.1E-27 202.9 16.6 166 202-374 90-285 (294)
28 cd04738 DHOD_2_like Dihydrooro 99.9 4.4E-22 9.6E-27 203.1 18.0 167 202-375 127-323 (327)
29 PRK05286 dihydroorotate dehydr 99.9 6.3E-22 1.4E-26 203.2 16.0 166 202-374 136-331 (344)
30 cd02803 OYE_like_FMN_family Ol 99.9 3.2E-21 6.9E-26 196.9 17.7 161 215-375 140-324 (327)
31 PRK13523 NADPH dehydrogenase N 99.9 1.4E-21 3E-26 199.8 11.3 160 215-375 141-318 (337)
32 cd04739 DHOD_like Dihydroorota 99.9 1.9E-20 4E-25 190.9 19.4 186 203-403 99-302 (325)
33 cd02930 DCR_FMN 2,4-dienoyl-Co 99.8 2.3E-20 5.1E-25 192.5 18.2 161 215-376 136-320 (353)
34 PRK07565 dihydroorotate dehydr 99.8 6.1E-20 1.3E-24 188.0 18.7 177 203-394 101-294 (334)
35 cd04733 OYE_like_2_FMN Old yel 99.8 1.1E-20 2.3E-25 193.9 13.1 162 214-375 147-335 (338)
36 cd02929 TMADH_HD_FMN Trimethyl 99.8 1.6E-19 3.5E-24 187.1 21.4 161 215-376 149-333 (370)
37 PRK08255 salicylyl-CoA 5-hydro 99.8 3.4E-19 7.3E-24 200.9 21.6 157 215-371 550-726 (765)
38 cd02931 ER_like_FMN Enoate red 99.8 6.8E-20 1.5E-24 190.6 13.9 162 215-376 149-349 (382)
39 cd02933 OYE_like_FMN Old yello 99.8 7.4E-20 1.6E-24 187.3 13.6 156 215-375 151-327 (338)
40 cd04735 OYE_like_4_FMN Old yel 99.8 3.6E-20 7.9E-25 190.9 11.1 161 215-376 143-327 (353)
41 cd02932 OYE_YqiM_FMN Old yello 99.8 1.3E-19 2.9E-24 185.7 12.8 160 215-374 153-332 (336)
42 PLN02495 oxidoreductase, actin 99.8 1.4E-18 3.1E-23 179.1 19.0 189 203-402 113-334 (385)
43 cd02809 alpha_hydroxyacid_oxid 99.8 1.4E-18 3E-23 175.4 17.6 188 148-367 64-261 (299)
44 COG0167 PyrD Dihydroorotate de 99.8 1.9E-18 4.1E-23 172.6 18.2 186 202-402 95-305 (310)
45 COG1902 NemA NADH:flavin oxido 99.8 1.6E-17 3.4E-22 170.6 22.1 160 216-375 149-331 (363)
46 TIGR01304 IMP_DH_rel_2 IMP deh 99.8 4.9E-18 1.1E-22 174.3 17.6 231 78-370 44-292 (369)
47 TIGR01304 IMP_DH_rel_2 IMP deh 99.8 1.3E-17 2.8E-22 171.2 20.3 178 148-370 44-224 (369)
48 cd04747 OYE_like_5_FMN Old yel 99.8 1.2E-18 2.7E-23 179.1 12.6 159 215-375 143-341 (361)
49 PRK02506 dihydroorotate dehydr 99.8 3.2E-18 6.9E-23 173.3 15.3 188 203-403 92-306 (310)
50 cd02911 arch_FMN Archeal FMN-b 99.8 3.7E-19 8.1E-24 172.9 6.9 193 80-308 1-222 (233)
51 PRK10605 N-ethylmaleimide redu 99.7 7.1E-17 1.5E-21 166.8 19.5 156 215-375 158-334 (362)
52 TIGR01036 pyrD_sub2 dihydrooro 99.7 2.3E-17 5E-22 168.6 13.3 166 202-374 133-330 (335)
53 PLN02826 dihydroorotate dehydr 99.7 2E-16 4.4E-21 164.8 18.6 177 204-394 187-396 (409)
54 PRK05437 isopentenyl pyrophosp 99.7 6.9E-16 1.5E-20 158.8 20.5 207 148-368 60-296 (352)
55 TIGR02151 IPP_isom_2 isopenten 99.7 2.2E-16 4.7E-21 161.5 16.4 207 148-368 53-289 (333)
56 cd02811 IDI-2_FMN Isopentenyl- 99.7 2.3E-15 4.9E-20 153.6 17.4 207 148-368 52-290 (326)
57 PF01180 DHO_dh: Dihydroorotat 99.7 6.1E-16 1.3E-20 155.9 12.2 166 203-374 96-286 (295)
58 PF00724 Oxidored_FMN: NADH:fl 99.6 1.3E-15 2.9E-20 156.5 9.2 159 216-374 149-333 (341)
59 PRK08649 inosine 5-monophospha 99.5 5.2E-14 1.1E-18 145.1 14.1 225 78-369 47-292 (368)
60 PLN02411 12-oxophytodienoate r 99.5 3.9E-14 8.5E-19 147.8 13.2 160 215-375 164-355 (391)
61 PRK14024 phosphoribosyl isomer 99.5 4.8E-14 1E-18 138.1 11.7 120 248-371 103-231 (241)
62 cd04730 NPD_like 2-Nitropropan 99.5 5.7E-13 1.2E-17 129.7 17.7 187 148-371 2-194 (236)
63 TIGR03151 enACPred_II putative 99.5 9.7E-13 2.1E-17 133.1 18.0 184 148-371 11-199 (307)
64 PRK08649 inosine 5-monophospha 99.5 3.8E-13 8.2E-18 138.7 14.7 170 148-365 47-218 (368)
65 COG0042 tRNA-dihydrouridine sy 99.5 1.9E-14 4.1E-19 146.3 3.6 152 136-313 69-235 (323)
66 PRK05458 guanosine 5'-monophos 99.5 5.9E-12 1.3E-16 127.4 20.8 251 148-435 37-310 (326)
67 TIGR01037 pyrD_sub1_fam dihydr 99.5 1.9E-13 4.1E-18 138.1 10.1 216 78-309 11-266 (300)
68 PRK04180 pyridoxal biosynthesi 99.4 6.6E-13 1.4E-17 130.0 12.5 157 219-395 27-259 (293)
69 PRK01033 imidazole glycerol ph 99.4 5.3E-12 1.1E-16 124.9 17.2 144 208-370 77-234 (258)
70 TIGR00736 nifR3_rel_arch TIM-b 99.4 5.3E-13 1.1E-17 129.0 7.7 193 86-309 1-223 (231)
71 TIGR02708 L_lactate_ox L-lacta 99.4 2.1E-11 4.6E-16 125.2 17.8 199 148-368 80-318 (367)
72 cd00381 IMPDH IMPDH: The catal 99.4 3.5E-11 7.6E-16 122.8 19.4 189 148-369 34-233 (325)
73 cd04737 LOX_like_FMN L-Lactate 99.4 1.2E-11 2.6E-16 126.7 15.6 215 135-369 61-312 (351)
74 PRK00748 1-(5-phosphoribosyl)- 99.3 3.8E-11 8.1E-16 116.8 15.1 118 248-368 102-226 (233)
75 cd02922 FCB2_FMN Flavocytochro 99.3 6.1E-11 1.3E-15 121.5 17.1 207 148-371 64-309 (344)
76 cd04722 TIM_phosphate_binding 99.3 9.9E-11 2.1E-15 109.1 17.0 189 153-363 3-200 (200)
77 TIGR03572 WbuZ glycosyl amidat 99.3 4.1E-11 8.8E-16 116.7 13.8 112 250-365 104-230 (232)
78 cd04732 HisA HisA. Phosphorib 99.3 1.7E-10 3.7E-15 112.2 17.1 117 249-370 102-227 (234)
79 cd04731 HisF The cyclase subun 99.3 6.1E-11 1.3E-15 116.2 13.5 115 251-368 102-229 (243)
80 TIGR01306 GMP_reduct_2 guanosi 99.2 6.1E-10 1.3E-14 112.5 19.4 187 148-367 34-232 (321)
81 TIGR00007 phosphoribosylformim 99.2 5.2E-10 1.1E-14 108.7 16.8 114 249-368 101-224 (230)
82 PRK13585 1-(5-phosphoribosyl)- 99.2 1.9E-10 4.1E-15 112.6 13.1 121 249-373 105-233 (241)
83 KOG2335|consensus 99.2 1.2E-10 2.6E-15 116.8 9.9 121 167-309 102-236 (358)
84 PF03060 NMO: Nitronate monoox 99.1 2.2E-09 4.7E-14 110.0 17.7 196 148-371 11-228 (330)
85 PRK02083 imidazole glycerol ph 99.1 1.1E-09 2.4E-14 108.1 13.0 117 249-368 103-233 (253)
86 PF01070 FMN_dh: FMN-dependent 99.1 1.2E-09 2.6E-14 112.7 13.5 212 135-367 47-314 (356)
87 KOG1436|consensus 99.1 2.2E-09 4.8E-14 105.3 14.1 177 203-393 178-385 (398)
88 PLN02535 glycolate oxidase 99.1 2.4E-09 5.2E-14 110.1 15.2 205 148-371 72-316 (364)
89 cd04740 DHOD_1B_like Dihydroor 99.1 5E-10 1.1E-14 112.9 10.1 209 78-308 10-262 (296)
90 cd04736 MDH_FMN Mandelate dehy 99.1 6.5E-09 1.4E-13 106.7 17.5 214 134-368 52-324 (361)
91 COG0106 HisA Phosphoribosylfor 99.0 3.5E-09 7.5E-14 101.8 14.2 158 188-370 62-229 (241)
92 PLN02979 glycolate oxidase 99.0 9.5E-09 2.1E-13 104.9 18.1 201 148-367 69-312 (366)
93 TIGR00735 hisF imidazoleglycer 99.0 1.8E-09 3.9E-14 106.7 12.4 117 249-368 103-235 (254)
94 PLN02493 probable peroxisomal 99.0 1.2E-08 2.5E-13 105.0 17.1 201 148-367 70-313 (367)
95 cd03332 LMO_FMN L-Lactate 2-mo 99.0 1.3E-08 2.9E-13 105.3 16.9 202 148-367 85-342 (383)
96 TIGR00343 pyridoxal 5'-phospha 99.0 1E-08 2.2E-13 100.5 14.8 137 239-395 41-253 (287)
97 PRK11197 lldD L-lactate dehydr 99.0 2.7E-08 5.9E-13 102.9 17.8 202 148-368 70-335 (381)
98 PRK06843 inosine 5-monophospha 98.9 8E-08 1.7E-12 100.0 19.4 130 214-368 151-291 (404)
99 cd02940 DHPD_FMN Dihydropyrimi 98.9 2.3E-09 4.9E-14 108.4 7.4 193 104-310 71-285 (299)
100 cd04743 NPD_PKS 2-Nitropropane 98.9 6E-08 1.3E-12 98.0 17.5 185 148-371 2-211 (320)
101 cd04731 HisF The cyclase subun 98.9 4.1E-09 8.9E-14 103.3 8.7 86 285-374 27-112 (243)
102 PRK02083 imidazole glycerol ph 98.9 3.9E-09 8.4E-14 104.2 8.5 86 285-374 30-115 (253)
103 cd04727 pdxS PdxS is a subunit 98.9 2.4E-07 5.2E-12 91.0 19.4 199 158-395 14-250 (283)
104 PF00478 IMPDH: IMP dehydrogen 98.8 9.7E-08 2.1E-12 97.6 14.6 194 148-368 37-246 (352)
105 TIGR01305 GMP_reduct_1 guanosi 98.8 6.1E-07 1.3E-11 90.4 19.5 185 148-363 45-242 (343)
106 KOG2333|consensus 98.8 2.5E-08 5.5E-13 102.7 9.0 237 166-452 349-604 (614)
107 KOG0134|consensus 98.7 5.9E-08 1.3E-12 99.3 11.5 161 215-375 173-361 (400)
108 PRK05096 guanosine 5'-monophos 98.7 6.8E-07 1.5E-11 90.0 18.1 187 148-368 46-248 (346)
109 TIGR00735 hisF imidazoleglycer 98.7 3.1E-08 6.8E-13 97.8 8.6 86 285-374 30-115 (254)
110 cd04729 NanE N-acetylmannosami 98.7 8.5E-08 1.8E-12 92.6 11.1 103 258-370 110-214 (219)
111 PRK13125 trpA tryptophan synth 98.7 1.5E-07 3.2E-12 92.5 13.0 148 213-367 15-219 (244)
112 cd04732 HisA HisA. Phosphorib 98.7 6.7E-08 1.5E-12 94.0 8.8 86 285-374 29-114 (234)
113 PRK01130 N-acetylmannosamine-6 98.7 1.4E-07 3.1E-12 91.1 10.8 103 257-367 105-207 (221)
114 cd04742 NPD_FabD 2-Nitropropan 98.7 6.9E-07 1.5E-11 93.4 16.4 80 287-371 165-257 (418)
115 cd04728 ThiG Thiazole synthase 98.7 4.2E-07 9.2E-12 87.7 13.6 141 206-367 65-209 (248)
116 cd02808 GltS_FMN Glutamate syn 98.7 2.1E-07 4.7E-12 97.4 12.6 111 254-368 196-320 (392)
117 TIGR01919 hisA-trpF 1-(5-phosp 98.6 2.9E-07 6.3E-12 90.3 12.4 116 249-369 103-232 (243)
118 KOG0538|consensus 98.6 5.8E-07 1.3E-11 88.3 13.4 206 148-368 68-313 (363)
119 PF00977 His_biosynth: Histidi 98.6 3.1E-07 6.6E-12 89.4 10.8 146 204-368 72-226 (229)
120 cd02801 DUS_like_FMN Dihydrour 98.6 2.9E-08 6.4E-13 96.2 3.6 155 132-309 53-216 (231)
121 PLN02446 (5-phosphoribosyl)-5- 98.6 1.1E-06 2.4E-11 86.4 13.6 144 204-366 82-242 (262)
122 PRK00208 thiG thiazole synthas 98.5 1.5E-06 3.2E-11 84.0 14.0 142 205-367 64-209 (250)
123 COG2070 Dioxygenases related t 98.5 1E-06 2.2E-11 90.4 13.5 95 264-370 121-221 (336)
124 cd02809 alpha_hydroxyacid_oxid 98.5 1.8E-07 4E-12 94.6 7.9 178 78-307 64-257 (299)
125 PRK13587 1-(5-phosphoribosyl)- 98.5 9.2E-07 2E-11 86.3 12.4 113 249-367 105-226 (234)
126 PF04131 NanE: Putative N-acet 98.5 2.9E-07 6.4E-12 85.4 8.1 105 254-372 76-182 (192)
127 TIGR02814 pfaD_fam PfaD family 98.5 3.2E-06 6.9E-11 89.0 16.0 79 288-371 171-262 (444)
128 PLN02274 inosine-5'-monophosph 98.5 2.2E-06 4.9E-11 92.4 15.0 133 214-368 246-386 (505)
129 COG0214 SNZ1 Pyridoxine biosyn 98.5 1.1E-06 2.3E-11 83.2 10.9 116 239-368 51-243 (296)
130 TIGR01302 IMP_dehydrog inosine 98.5 2.4E-06 5.1E-11 91.3 14.9 134 214-371 222-365 (450)
131 PTZ00314 inosine-5'-monophosph 98.5 3.6E-06 7.9E-11 90.7 16.1 132 212-368 237-379 (495)
132 PRK14114 1-(5-phosphoribosyl)- 98.5 1.4E-06 3E-11 85.3 11.5 115 249-369 102-230 (241)
133 KOG1799|consensus 98.5 4.3E-07 9.3E-12 90.3 7.8 193 202-404 200-422 (471)
134 cd03319 L-Ala-DL-Glu_epimerase 98.4 4.5E-06 9.7E-11 85.1 15.3 135 202-362 122-258 (316)
135 PRK07259 dihydroorotate dehydr 98.4 1.2E-06 2.6E-11 88.7 10.7 119 183-308 135-265 (301)
136 KOG1606|consensus 98.4 1.1E-06 2.4E-11 81.9 9.4 51 322-373 197-249 (296)
137 PRK07695 transcriptional regul 98.4 7.1E-06 1.5E-10 78.1 15.3 76 289-368 106-183 (201)
138 COG0107 HisF Imidazoleglycerol 98.4 6.6E-07 1.4E-11 84.9 7.6 88 283-374 28-115 (256)
139 cd00945 Aldolase_Class_I Class 98.4 1.2E-05 2.6E-10 75.4 16.3 150 196-362 40-201 (201)
140 TIGR03572 WbuZ glycosyl amidat 98.4 8.7E-07 1.9E-11 86.2 8.8 85 286-374 31-115 (232)
141 cd04723 HisA_HisF Phosphoribos 98.4 2.5E-06 5.4E-11 83.2 11.1 113 249-368 107-224 (233)
142 PRK08318 dihydropyrimidine deh 98.4 5.6E-07 1.2E-11 95.3 6.9 191 104-309 71-285 (420)
143 PRK13586 1-(5-phosphoribosyl)- 98.4 3.1E-06 6.8E-11 82.4 11.4 113 249-368 102-224 (232)
144 TIGR00262 trpA tryptophan synt 98.4 4.7E-06 1E-10 82.4 12.8 149 213-366 21-231 (256)
145 cd02810 DHOD_DHPD_FMN Dihydroo 98.3 2.4E-06 5.3E-11 85.8 10.3 119 184-308 141-274 (289)
146 PRK07807 inosine 5-monophospha 98.3 8.9E-06 1.9E-10 87.2 14.5 104 256-369 252-366 (479)
147 TIGR00734 hisAF_rel hisA/hisF 98.3 1.2E-05 2.6E-10 77.8 13.5 108 249-368 108-219 (221)
148 cd00331 IGPS Indole-3-glycerol 98.3 2.8E-05 6.1E-10 74.9 15.6 102 256-371 107-210 (217)
149 CHL00200 trpA tryptophan synth 98.3 1.5E-05 3.4E-10 78.9 13.9 150 213-367 26-236 (263)
150 PRK00748 1-(5-phosphoribosyl)- 98.3 2.7E-06 5.9E-11 82.6 8.5 85 285-373 30-114 (233)
151 KOG2334|consensus 98.2 2.8E-07 6.1E-12 94.0 0.9 234 126-376 73-425 (477)
152 PLN02591 tryptophan synthase 98.2 2E-05 4.4E-10 77.5 13.7 150 213-367 13-223 (250)
153 cd04730 NPD_like 2-Nitropropan 98.2 0.00012 2.6E-09 71.2 18.2 185 78-308 2-187 (236)
154 PRK07107 inosine 5-monophospha 98.2 2E-05 4.4E-10 84.9 13.9 127 219-368 245-387 (502)
155 PRK14024 phosphoribosyl isomer 98.2 5.8E-06 1.3E-10 81.1 8.6 84 286-374 33-116 (241)
156 PRK00507 deoxyribose-phosphate 98.2 2.9E-05 6.4E-10 75.0 13.2 126 219-364 78-210 (221)
157 PRK13585 1-(5-phosphoribosyl)- 98.2 5.4E-06 1.2E-10 81.1 8.2 85 286-374 33-117 (241)
158 PRK05567 inosine 5'-monophosph 98.2 3.3E-05 7.1E-10 83.4 14.8 102 257-368 254-366 (486)
159 TIGR01303 IMP_DH_rel_1 IMP deh 98.1 2.3E-05 5E-10 83.9 13.0 107 255-368 249-363 (475)
160 CHL00162 thiG thiamin biosynth 98.1 7.2E-05 1.6E-09 72.4 14.7 147 208-368 75-224 (267)
161 PRK01033 imidazole glycerol ph 98.1 9E-06 2E-10 80.5 8.8 85 286-374 31-115 (258)
162 PF01645 Glu_synthase: Conserv 98.1 1.4E-05 3.1E-10 82.3 10.5 112 253-368 184-309 (368)
163 cd04724 Tryptophan_synthase_al 98.1 4.3E-05 9.4E-10 75.0 13.4 150 213-367 11-220 (242)
164 PRK13587 1-(5-phosphoribosyl)- 98.1 8.6E-06 1.9E-10 79.5 8.4 85 286-374 32-117 (234)
165 PRK13111 trpA tryptophan synth 98.1 5.1E-05 1.1E-09 75.1 13.5 148 213-366 23-232 (258)
166 PRK04128 1-(5-phosphoribosyl)- 98.1 1E-05 2.3E-10 78.6 8.5 82 286-374 31-113 (228)
167 PF05690 ThiG: Thiazole biosyn 98.1 6.3E-05 1.4E-09 72.1 13.1 145 203-367 62-209 (247)
168 COG1304 idi Isopentenyl diphos 98.1 5.3E-06 1.1E-10 85.5 6.2 106 254-368 201-308 (360)
169 cd00405 PRAI Phosphoribosylant 98.0 0.00043 9.3E-09 66.0 18.4 186 157-371 4-190 (203)
170 TIGR02129 hisA_euk phosphoribo 98.0 4E-05 8.7E-10 75.1 11.4 109 255-367 114-237 (253)
171 COG0274 DeoC Deoxyribose-phosp 98.0 4.2E-05 9.1E-10 72.9 10.9 134 212-364 72-214 (228)
172 cd04733 OYE_like_2_FMN Old yel 98.0 3.3E-05 7.2E-10 79.5 11.0 119 185-308 194-324 (338)
173 PRK00278 trpC indole-3-glycero 98.0 0.00021 4.5E-09 70.9 15.9 138 202-371 110-249 (260)
174 TIGR00007 phosphoribosylformim 98.0 2.1E-05 4.6E-10 76.3 8.5 85 286-374 29-113 (230)
175 PRK14114 1-(5-phosphoribosyl)- 98.0 2.2E-05 4.8E-10 76.9 8.3 85 285-374 30-114 (241)
176 PLN02617 imidazole glycerol ph 98.0 0.0001 2.2E-09 80.0 14.2 76 285-363 438-513 (538)
177 TIGR01769 GGGP geranylgeranylg 98.0 0.00026 5.6E-09 67.6 15.2 72 285-362 134-205 (205)
178 COG3010 NanE Putative N-acetyl 98.0 9.8E-05 2.1E-09 69.2 11.8 104 254-370 110-216 (229)
179 TIGR00259 thylakoid_BtpA membr 97.9 0.00057 1.2E-08 67.3 17.5 152 202-373 78-237 (257)
180 cd04726 KGPDC_HPS 3-Keto-L-gul 97.9 0.00034 7.3E-09 66.3 15.5 141 203-370 53-194 (202)
181 PRK07226 fructose-bisphosphate 97.9 0.00082 1.8E-08 67.0 18.8 90 270-370 138-239 (267)
182 cd04741 DHOD_1A_like Dihydroor 97.9 2.4E-05 5.3E-10 78.9 7.8 116 185-308 137-274 (294)
183 cd03315 MLE_like Muconate lact 97.9 0.0003 6.5E-09 69.8 15.3 133 203-361 74-209 (265)
184 COG0106 HisA Phosphoribosylfor 97.9 4.8E-05 1E-09 73.5 8.6 86 285-374 31-116 (241)
185 PF03437 BtpA: BtpA family; I 97.9 0.00062 1.3E-08 67.0 16.3 167 203-389 80-251 (254)
186 PRK13523 NADPH dehydrogenase N 97.9 2.9E-05 6.2E-10 79.9 7.3 125 186-331 188-322 (337)
187 cd03316 MR_like Mandelate race 97.9 0.00019 4E-09 74.4 13.1 140 203-362 126-270 (357)
188 PLN02446 (5-phosphoribosyl)-5- 97.9 6.1E-05 1.3E-09 74.2 8.9 80 285-373 43-126 (262)
189 COG0159 TrpA Tryptophan syntha 97.8 0.00069 1.5E-08 66.7 16.1 151 213-367 28-238 (265)
190 COG0107 HisF Imidazoleglycerol 97.8 0.00015 3.2E-09 69.2 11.0 141 203-363 74-230 (256)
191 TIGR02129 hisA_euk phosphoribo 97.8 7.2E-05 1.6E-09 73.4 8.8 73 286-369 38-111 (253)
192 PF00977 His_biosynth: Histidi 97.8 1.9E-05 4.1E-10 76.8 4.7 86 285-374 29-114 (229)
193 cd00958 DhnA Class I fructose- 97.8 0.00041 8.9E-09 67.5 14.0 90 269-370 120-222 (235)
194 TIGR01949 AroFGH_arch predicte 97.8 0.001 2.2E-08 65.9 17.0 103 256-370 119-235 (258)
195 PLN02617 imidazole glycerol ph 97.8 4.8E-05 1E-09 82.5 8.0 87 283-370 265-362 (538)
196 PF00290 Trp_syntA: Tryptophan 97.8 0.00014 3E-09 71.9 10.4 150 213-367 21-231 (259)
197 cd02932 OYE_YqiM_FMN Old yello 97.8 0.0001 2.2E-09 75.8 10.0 112 185-308 199-322 (336)
198 PLN02334 ribulose-phosphate 3- 97.8 0.0011 2.4E-08 64.4 16.7 142 202-370 64-210 (229)
199 PRK13586 1-(5-phosphoribosyl)- 97.8 8.2E-05 1.8E-09 72.6 8.5 84 286-374 31-114 (232)
200 cd00429 RPE Ribulose-5-phospha 97.8 0.00077 1.7E-08 64.1 14.9 141 203-371 57-203 (211)
201 PRK04128 1-(5-phosphoribosyl)- 97.8 0.00015 3.2E-09 70.6 9.8 106 249-368 102-217 (228)
202 TIGR01163 rpe ribulose-phospha 97.7 0.00079 1.7E-08 64.1 14.6 141 203-371 56-202 (210)
203 cd04738 DHOD_2_like Dihydrooro 97.7 0.00034 7.3E-09 71.8 12.7 121 183-309 175-312 (327)
204 TIGR01919 hisA-trpF 1-(5-phosp 97.7 0.0001 2.2E-09 72.5 8.4 84 286-374 32-115 (243)
205 TIGR03128 RuMP_HxlA 3-hexulose 97.7 0.0013 2.9E-08 62.6 15.8 105 257-370 89-194 (206)
206 TIGR00126 deoC deoxyribose-pho 97.7 0.00068 1.5E-08 65.1 13.5 130 217-363 72-205 (211)
207 cd02812 PcrB_like PcrB_like pr 97.7 0.00012 2.5E-09 70.5 7.9 83 283-374 133-216 (219)
208 cd04723 HisA_HisF Phosphoribos 97.7 0.00017 3.6E-09 70.4 9.0 83 285-373 35-117 (233)
209 cd02933 OYE_like_FMN Old yello 97.6 0.00051 1.1E-08 70.8 12.1 104 186-308 198-316 (338)
210 TIGR01768 GGGP-family geranylg 97.6 0.00018 3.9E-09 69.3 8.1 80 289-374 139-220 (223)
211 PRK13307 bifunctional formalde 97.6 0.0019 4.2E-08 67.4 16.0 140 202-370 225-366 (391)
212 cd00381 IMPDH IMPDH: The catal 97.6 0.001 2.2E-08 68.1 13.5 190 78-308 34-228 (325)
213 cd00377 ICL_PEPM Members of th 97.6 0.0046 9.9E-08 60.8 17.5 151 201-365 67-229 (243)
214 PRK07565 dihydroorotate dehydr 97.6 0.00083 1.8E-08 69.1 12.3 106 256-362 86-197 (334)
215 cd00564 TMP_TenI Thiamine mono 97.5 0.00045 9.7E-09 64.6 9.5 80 289-370 106-186 (196)
216 COG2022 ThiG Uncharacterized e 97.5 0.0011 2.3E-08 63.4 11.6 142 205-366 71-215 (262)
217 cd00452 KDPG_aldolase KDPG and 97.5 0.0023 4.9E-08 60.4 13.7 87 261-366 88-175 (190)
218 PRK11840 bifunctional sulfur c 97.5 0.0031 6.7E-08 63.8 15.0 141 207-367 140-283 (326)
219 PRK07028 bifunctional hexulose 97.5 0.0028 6E-08 67.5 15.4 102 259-369 96-197 (430)
220 cd04727 pdxS PdxS is a subunit 97.5 0.00095 2.1E-08 66.0 10.7 91 249-360 47-137 (283)
221 cd00959 DeoC 2-deoxyribose-5-p 97.4 0.0025 5.3E-08 60.9 13.1 124 220-360 74-201 (203)
222 PRK05581 ribulose-phosphate 3- 97.4 0.0056 1.2E-07 58.7 15.2 138 204-371 62-207 (220)
223 PRK04169 geranylgeranylglycery 97.4 0.00034 7.3E-09 68.0 6.4 68 297-370 153-221 (232)
224 cd04747 OYE_like_5_FMN Old yel 97.4 0.00076 1.7E-08 70.0 9.4 112 185-308 189-330 (361)
225 PRK05286 dihydroorotate dehydr 97.4 0.0013 2.9E-08 67.9 11.0 121 183-309 184-321 (344)
226 PRK05283 deoxyribose-phosphate 97.3 0.0017 3.7E-08 63.9 11.0 120 217-352 85-215 (257)
227 PRK00043 thiE thiamine-phospha 97.3 0.0012 2.5E-08 63.0 9.7 82 286-370 113-196 (212)
228 PRK08883 ribulose-phosphate 3- 97.3 0.0058 1.3E-07 59.1 14.5 136 203-369 58-202 (220)
229 TIGR00734 hisAF_rel hisA/hisF 97.3 0.00082 1.8E-08 65.1 7.9 85 285-375 36-121 (221)
230 PRK06806 fructose-bisphosphate 97.3 0.0058 1.2E-07 61.3 14.0 82 285-368 153-236 (281)
231 TIGR00693 thiE thiamine-phosph 97.3 0.0036 7.8E-08 59.1 11.9 83 283-369 102-187 (196)
232 PRK06512 thiamine-phosphate py 97.3 0.0029 6.4E-08 61.2 11.4 77 291-370 124-200 (221)
233 PRK09140 2-dehydro-3-deoxy-6-p 97.2 0.0056 1.2E-07 58.6 13.1 72 285-368 112-185 (206)
234 PRK05437 isopentenyl pyrophosp 97.2 0.0075 1.6E-07 62.5 14.9 108 253-362 102-217 (352)
235 COG0352 ThiE Thiamine monophos 97.2 0.004 8.8E-08 59.7 11.7 82 287-371 113-195 (211)
236 COG0434 SgcQ Predicted TIM-bar 97.2 0.029 6.3E-07 54.1 16.8 154 201-371 83-241 (263)
237 PF01791 DeoC: DeoC/LacD famil 97.2 0.001 2.2E-08 65.0 7.3 150 203-367 56-235 (236)
238 cd04739 DHOD_like Dihydroorota 97.2 0.0049 1.1E-07 63.2 12.6 106 257-363 85-196 (325)
239 PTZ00170 D-ribulose-5-phosphat 97.1 0.012 2.6E-07 57.2 14.1 148 206-370 9-209 (228)
240 PRK01222 N-(5'-phosphoribosyl) 97.1 0.16 3.5E-06 48.7 21.7 179 157-370 8-191 (210)
241 COG0135 TrpF Phosphoribosylant 97.1 0.11 2.3E-06 49.8 20.0 181 157-370 7-191 (208)
242 TIGR02320 PEP_mutase phosphoen 97.0 0.018 3.8E-07 57.9 14.8 153 201-364 76-242 (285)
243 PRK02615 thiamine-phosphate py 97.0 0.0064 1.4E-07 62.7 11.7 83 283-369 246-329 (347)
244 COG0269 SgbH 3-hexulose-6-phos 97.0 0.03 6.5E-07 53.4 15.1 121 254-391 90-213 (217)
245 PF00218 IGPS: Indole-3-glycer 97.0 0.006 1.3E-07 60.2 10.6 137 203-371 109-247 (254)
246 KOG2550|consensus 97.0 0.0024 5.2E-08 65.6 7.7 101 256-365 276-386 (503)
247 PRK05848 nicotinate-nucleotide 96.9 0.0085 1.8E-07 59.8 11.6 93 258-371 167-266 (273)
248 PF02581 TMP-TENI: Thiamine mo 96.9 0.0029 6.3E-08 59.1 7.8 77 285-365 103-180 (180)
249 PRK04302 triosephosphate isome 96.9 0.011 2.4E-07 57.2 12.0 107 256-371 100-211 (223)
250 PRK07428 nicotinate-nucleotide 96.9 0.0095 2.1E-07 59.9 11.7 94 259-371 182-280 (288)
251 TIGR02151 IPP_isom_2 isopenten 96.9 0.023 5.1E-07 58.4 14.9 109 253-363 95-211 (333)
252 PRK06552 keto-hydroxyglutarate 96.9 0.015 3.3E-07 55.9 12.6 144 204-366 13-187 (213)
253 PRK06801 hypothetical protein; 96.9 0.028 6.1E-07 56.5 14.9 76 286-365 157-236 (286)
254 cd00408 DHDPS-like Dihydrodipi 96.9 0.0095 2.1E-07 59.6 11.6 126 214-352 16-149 (281)
255 PRK08005 epimerase; Validated 96.9 0.04 8.6E-07 52.9 15.2 148 206-370 3-199 (210)
256 cd04734 OYE_like_3_FMN Old yel 96.9 0.0075 1.6E-07 62.3 10.8 119 185-309 186-318 (343)
257 cd02931 ER_like_FMN Enoate red 96.9 0.0076 1.6E-07 63.2 11.0 130 185-330 196-351 (382)
258 PRK11750 gltB glutamate syntha 96.9 0.0045 9.7E-08 73.3 10.0 109 255-368 979-1102(1485)
259 PRK07455 keto-hydroxyglutarate 96.8 0.014 3E-07 55.0 11.4 73 284-367 112-185 (187)
260 COG0036 Rpe Pentose-5-phosphat 96.8 0.047 1E-06 52.4 14.9 150 204-370 4-205 (220)
261 TIGR03151 enACPred_II putative 96.8 0.026 5.6E-07 57.5 13.6 179 78-307 11-191 (307)
262 TIGR01859 fruc_bis_ald_ fructo 96.8 0.037 8E-07 55.6 14.5 76 286-365 154-233 (282)
263 TIGR00078 nadC nicotinate-nucl 96.7 0.016 3.4E-07 57.7 11.6 83 261-364 166-252 (265)
264 PRK08745 ribulose-phosphate 3- 96.7 0.063 1.4E-06 52.1 15.1 145 206-369 6-206 (223)
265 PRK13957 indole-3-glycerol-pho 96.7 0.088 1.9E-06 51.7 16.0 136 203-371 102-239 (247)
266 cd01572 QPRTase Quinolinate ph 96.6 0.022 4.7E-07 56.8 11.8 84 262-366 171-258 (268)
267 TIGR01182 eda Entner-Doudoroff 96.6 0.022 4.8E-07 54.4 11.1 150 203-370 7-184 (204)
268 COG0329 DapA Dihydrodipicolina 96.6 0.028 6.1E-07 56.9 12.5 125 214-351 23-155 (299)
269 PRK07709 fructose-bisphosphate 96.6 0.11 2.3E-06 52.3 16.4 144 203-364 77-235 (285)
270 cd01568 QPRTase_NadC Quinolina 96.5 0.023 5E-07 56.7 11.3 90 261-371 169-264 (269)
271 TIGR02317 prpB methylisocitrat 96.5 0.053 1.1E-06 54.5 13.7 150 201-364 71-231 (285)
272 PRK05742 nicotinate-nucleotide 96.5 0.031 6.7E-07 55.9 11.8 73 284-371 196-270 (277)
273 PRK03512 thiamine-phosphate py 96.5 0.035 7.5E-07 53.4 11.8 85 283-371 108-195 (211)
274 PF01884 PcrB: PcrB family; I 96.5 0.0025 5.5E-08 61.7 3.8 70 296-371 151-220 (230)
275 PF00478 IMPDH: IMP dehydrogen 96.5 0.025 5.3E-07 58.3 11.0 97 255-364 71-179 (352)
276 PF09370 TIM-br_sig_trns: TIM- 96.4 0.021 4.5E-07 56.2 9.9 173 178-364 59-248 (268)
277 COG0069 GltB Glutamate synthas 96.4 0.0091 2E-07 63.5 7.9 108 255-367 286-408 (485)
278 PRK11320 prpB 2-methylisocitra 96.4 0.071 1.5E-06 53.7 14.0 149 201-364 76-236 (292)
279 cd04722 TIM_phosphate_binding 96.4 0.11 2.5E-06 47.7 14.5 194 81-307 1-200 (200)
280 PRK08255 salicylyl-CoA 5-hydro 96.4 0.015 3.3E-07 66.4 10.2 98 199-308 614-719 (765)
281 TIGR02319 CPEP_Pphonmut carbox 96.4 0.091 2E-06 53.0 14.5 149 201-364 75-235 (294)
282 PF04481 DUF561: Protein of un 96.4 0.024 5.2E-07 53.9 9.6 161 188-365 48-217 (242)
283 PRK08227 autoinducer 2 aldolas 96.4 0.25 5.4E-06 49.1 17.2 96 259-368 129-232 (264)
284 PF13714 PEP_mutase: Phosphoen 96.4 0.04 8.7E-07 53.9 11.5 144 202-365 68-222 (238)
285 cd00331 IGPS Indole-3-glycerol 96.4 0.021 4.6E-07 54.8 9.5 90 271-367 10-106 (217)
286 PRK07315 fructose-bisphosphate 96.3 0.14 3E-06 51.7 15.7 77 286-367 155-237 (293)
287 cd00952 CHBPH_aldolase Trans-o 96.3 0.044 9.5E-07 55.8 12.2 125 214-351 27-160 (309)
288 PRK08999 hypothetical protein; 96.3 0.021 4.5E-07 58.0 9.7 78 283-365 232-311 (312)
289 cd02803 OYE_like_FMN_family Ol 96.3 0.025 5.5E-07 57.7 10.5 101 200-308 205-313 (327)
290 cd02811 IDI-2_FMN Isopentenyl- 96.3 0.044 9.5E-07 56.3 12.1 108 253-362 94-209 (326)
291 PRK08072 nicotinate-nucleotide 96.3 0.045 9.8E-07 54.8 11.8 93 259-370 174-268 (277)
292 cd03321 mandelate_racemase Man 96.3 0.062 1.3E-06 55.7 13.2 97 255-361 168-266 (355)
293 PF04131 NanE: Putative N-acet 96.3 0.037 8E-07 51.8 10.1 90 263-361 24-118 (192)
294 TIGR03249 KdgD 5-dehydro-4-deo 96.2 0.06 1.3E-06 54.4 12.4 125 214-352 24-153 (296)
295 PLN02979 glycolate oxidase 96.2 0.044 9.6E-07 56.6 11.4 46 317-364 208-253 (366)
296 TIGR01361 DAHP_synth_Bsub phos 96.2 0.14 3.1E-06 50.8 14.4 117 249-371 115-238 (260)
297 PRK03620 5-dehydro-4-deoxygluc 96.2 0.063 1.4E-06 54.5 12.2 124 214-351 26-154 (303)
298 cd00950 DHDPS Dihydrodipicolin 96.1 0.049 1.1E-06 54.6 11.2 126 214-352 19-152 (284)
299 cd03329 MR_like_4 Mandelate ra 96.1 0.11 2.4E-06 54.2 14.1 124 214-361 143-270 (368)
300 COG2513 PrpB PEP phosphonomuta 96.1 0.39 8.4E-06 47.9 16.9 147 200-362 75-234 (289)
301 COG0134 TrpC Indole-3-glycerol 96.1 0.078 1.7E-06 52.1 11.8 139 201-371 105-245 (254)
302 PLN02460 indole-3-glycerol-pho 96.1 0.072 1.6E-06 54.5 11.9 104 255-371 215-326 (338)
303 cd02929 TMADH_HD_FMN Trimethyl 96.0 0.034 7.4E-07 58.1 9.8 128 185-330 195-335 (370)
304 PLN02535 glycolate oxidase 96.0 0.058 1.2E-06 56.0 11.3 44 317-362 208-251 (364)
305 TIGR00674 dapA dihydrodipicoli 96.0 0.061 1.3E-06 54.0 11.4 126 214-352 17-150 (285)
306 PF00834 Ribul_P_3_epim: Ribul 96.0 0.049 1.1E-06 52.0 10.0 144 206-368 2-200 (201)
307 PLN02495 oxidoreductase, actin 96.0 0.071 1.5E-06 55.8 12.0 103 263-366 104-218 (385)
308 PRK08610 fructose-bisphosphate 96.0 0.34 7.4E-06 48.7 16.4 144 203-364 77-235 (286)
309 PRK08185 hypothetical protein; 96.0 0.28 6.1E-06 49.2 15.7 141 203-364 68-230 (283)
310 PRK09722 allulose-6-phosphate 96.0 0.2 4.4E-06 48.7 14.2 145 206-367 5-203 (229)
311 cd01573 modD_like ModD; Quinol 96.0 0.046 9.9E-07 54.7 9.9 72 283-366 189-262 (272)
312 PRK13802 bifunctional indole-3 95.9 0.076 1.6E-06 59.6 12.3 138 202-371 110-249 (695)
313 cd00951 KDGDH 5-dehydro-4-deox 95.9 0.11 2.4E-06 52.3 12.6 125 214-352 19-148 (289)
314 cd00377 ICL_PEPM Members of th 95.9 0.085 1.8E-06 51.8 11.4 138 222-362 22-180 (243)
315 COG1646 Predicted phosphate-bi 95.9 0.011 2.4E-07 56.8 4.9 80 286-373 151-231 (240)
316 PF01680 SOR_SNZ: SOR/SNZ fami 95.9 0.024 5.2E-07 52.2 6.8 110 219-359 24-142 (208)
317 TIGR00683 nanA N-acetylneurami 95.9 0.099 2.1E-06 52.7 12.1 126 214-352 19-154 (290)
318 PRK12290 thiE thiamine-phospha 95.9 0.049 1.1E-06 57.5 10.0 84 283-370 306-400 (437)
319 PRK03170 dihydrodipicolinate s 95.9 0.092 2E-06 52.9 11.8 125 214-351 20-152 (292)
320 PRK02227 hypothetical protein; 95.9 0.33 7.2E-06 47.2 14.9 158 218-394 10-180 (238)
321 TIGR02313 HpaI-NOT-DapA 2,4-di 95.8 0.1 2.2E-06 52.8 11.9 123 214-352 19-153 (294)
322 cd06556 ICL_KPHMT Members of t 95.8 0.27 5.9E-06 48.2 14.5 105 203-339 73-198 (240)
323 PRK05835 fructose-bisphosphate 95.8 0.38 8.3E-06 48.7 15.9 100 253-355 111-227 (307)
324 PRK07998 gatY putative fructos 95.8 0.21 4.6E-06 50.1 13.9 142 203-364 74-231 (283)
325 PLN02493 probable peroxisomal 95.8 0.083 1.8E-06 54.9 11.4 45 317-363 209-253 (367)
326 PRK07114 keto-hydroxyglutarate 95.8 0.11 2.4E-06 50.3 11.5 151 203-371 14-197 (222)
327 PRK13813 orotidine 5'-phosphat 95.8 0.13 2.8E-06 49.3 12.1 146 205-370 5-200 (215)
328 PRK09517 multifunctional thiam 95.8 0.13 2.8E-06 58.7 13.9 70 298-370 128-202 (755)
329 PF04476 DUF556: Protein of un 95.8 0.56 1.2E-05 45.5 15.9 154 218-394 10-180 (235)
330 PRK04147 N-acetylneuraminate l 95.8 0.13 2.8E-06 51.9 12.3 123 214-352 22-156 (293)
331 PRK05096 guanosine 5'-monophos 95.7 0.072 1.6E-06 54.3 10.2 129 255-393 80-212 (346)
332 PRK13958 N-(5'-phosphoribosyl) 95.7 1.3 2.8E-05 42.5 18.5 176 157-367 6-187 (207)
333 TIGR01305 GMP_reduct_1 guanosi 95.7 0.098 2.1E-06 53.3 11.0 96 255-362 79-178 (343)
334 PF04309 G3P_antiterm: Glycero 95.7 0.0087 1.9E-07 55.6 3.1 72 283-366 102-173 (175)
335 PRK09250 fructose-bisphosphate 95.7 0.15 3.2E-06 52.4 12.2 110 258-369 180-325 (348)
336 PRK13957 indole-3-glycerol-pho 95.6 0.13 2.7E-06 50.6 11.2 76 285-367 61-136 (247)
337 PLN02898 HMP-P kinase/thiamin- 95.6 0.18 3.9E-06 54.8 13.5 81 283-368 396-481 (502)
338 PRK09195 gatY tagatose-bisphos 95.6 0.36 7.8E-06 48.5 14.5 145 203-365 74-235 (284)
339 PRK00278 trpC indole-3-glycero 95.6 0.18 3.9E-06 50.0 12.4 115 217-362 71-187 (260)
340 PRK13397 3-deoxy-7-phosphohept 95.5 0.14 3.1E-06 50.3 11.3 110 249-364 105-221 (250)
341 PRK06015 keto-hydroxyglutarate 95.5 0.16 3.4E-06 48.5 11.2 146 203-366 3-176 (201)
342 cd00947 TBP_aldolase_IIB Tagat 95.5 0.35 7.5E-06 48.4 14.1 145 203-365 69-229 (276)
343 PRK05458 guanosine 5'-monophos 95.5 0.083 1.8E-06 54.1 9.9 96 255-362 70-168 (326)
344 PRK12737 gatY tagatose-bisphos 95.5 0.22 4.7E-06 50.1 12.7 102 256-367 59-180 (284)
345 cd02922 FCB2_FMN Flavocytochro 95.5 0.15 3.2E-06 52.7 11.8 90 271-362 117-241 (344)
346 TIGR01858 tag_bisphos_ald clas 95.5 0.22 4.7E-06 50.0 12.6 102 255-366 56-177 (282)
347 TIGR01858 tag_bisphos_ald clas 95.4 0.41 8.8E-06 48.1 14.3 144 203-364 72-232 (282)
348 TIGR01306 GMP_reduct_2 guanosi 95.4 0.11 2.3E-06 53.1 10.3 97 255-362 67-165 (321)
349 PRK09427 bifunctional indole-3 95.4 0.17 3.6E-06 54.2 12.2 102 255-371 144-247 (454)
350 PRK14057 epimerase; Provisiona 95.4 0.32 7E-06 47.9 13.2 147 203-370 19-229 (254)
351 COG1830 FbaB DhnA-type fructos 95.4 0.24 5.2E-06 48.8 12.1 102 256-368 126-243 (265)
352 PRK09195 gatY tagatose-bisphos 95.4 0.24 5.3E-06 49.7 12.5 99 256-364 59-177 (284)
353 PRK12738 kbaY tagatose-bisphos 95.4 0.58 1.3E-05 47.1 15.2 144 203-364 74-234 (286)
354 PRK12737 gatY tagatose-bisphos 95.4 0.57 1.2E-05 47.1 15.1 144 203-364 74-234 (284)
355 cd03332 LMO_FMN L-Lactate 2-mo 95.4 0.14 3.1E-06 53.5 11.1 44 317-362 238-281 (383)
356 PRK07998 gatY putative fructos 95.3 0.24 5.1E-06 49.8 12.2 100 255-364 58-175 (283)
357 PRK05718 keto-hydroxyglutarate 95.3 0.14 3E-06 49.3 10.2 151 203-372 14-192 (212)
358 PRK06852 aldolase; Validated 95.3 0.14 3.1E-06 51.8 10.6 105 258-369 155-272 (304)
359 cd03325 D-galactonate_dehydrat 95.3 0.25 5.3E-06 51.2 12.8 143 203-362 112-257 (352)
360 PRK12595 bifunctional 3-deoxy- 95.3 0.19 4.2E-06 52.2 11.7 116 249-372 208-330 (360)
361 PRK02506 dihydroorotate dehydr 95.2 0.036 7.8E-07 56.5 6.3 113 187-304 139-269 (310)
362 TIGR00167 cbbA ketose-bisphosp 95.2 0.4 8.8E-06 48.3 13.6 144 203-364 77-238 (288)
363 PRK06843 inosine 5-monophospha 95.2 0.19 4.1E-06 52.9 11.5 70 286-363 153-223 (404)
364 PRK08385 nicotinate-nucleotide 95.2 0.21 4.5E-06 50.0 11.3 94 259-370 169-267 (278)
365 PRK14017 galactonate dehydrata 95.2 0.31 6.8E-06 51.0 13.3 142 203-361 113-257 (382)
366 PRK00311 panB 3-methyl-2-oxobu 95.2 0.47 1E-05 47.2 13.7 150 158-339 21-203 (264)
367 KOG0623|consensus 95.2 0.055 1.2E-06 54.5 7.0 92 286-388 442-533 (541)
368 PRK12738 kbaY tagatose-bisphos 95.1 0.34 7.3E-06 48.8 12.6 102 255-366 58-179 (286)
369 cd02930 DCR_FMN 2,4-dienoyl-Co 95.1 0.095 2.1E-06 54.4 9.0 114 186-308 183-308 (353)
370 cd04735 OYE_like_4_FMN Old yel 95.1 0.063 1.4E-06 55.7 7.6 108 186-308 190-315 (353)
371 PRK08091 ribulose-phosphate 3- 95.1 1.1 2.3E-05 43.7 15.4 136 203-370 68-215 (228)
372 cd00953 KDG_aldolase KDG (2-ke 95.1 0.35 7.5E-06 48.5 12.7 121 213-352 17-147 (279)
373 PRK12857 fructose-1,6-bisphosp 95.0 0.42 9.1E-06 48.0 13.0 100 256-365 59-178 (284)
374 PLN02274 inosine-5'-monophosph 95.0 0.21 4.5E-06 54.4 11.6 75 286-368 248-325 (505)
375 TIGR01163 rpe ribulose-phospha 95.0 0.44 9.5E-06 45.1 12.7 129 208-363 3-134 (210)
376 PLN02417 dihydrodipicolinate s 95.0 0.22 4.7E-06 50.0 11.0 124 214-352 20-151 (280)
377 PRK08610 fructose-bisphosphate 95.0 0.43 9.4E-06 48.0 12.9 99 256-364 60-178 (286)
378 PF00701 DHDPS: Dihydrodipicol 95.0 0.15 3.2E-06 51.2 9.8 123 214-352 20-153 (289)
379 TIGR02321 Pphn_pyruv_hyd phosp 95.0 0.8 1.7E-05 46.2 14.9 148 201-363 73-236 (290)
380 COG0167 PyrD Dihydroorotate de 94.9 0.2 4.3E-06 50.9 10.4 114 183-304 139-269 (310)
381 PTZ00314 inosine-5'-monophosph 94.9 0.18 3.9E-06 54.8 10.8 69 286-362 241-310 (495)
382 PRK00230 orotidine 5'-phosphat 94.9 1.2 2.6E-05 43.3 15.6 66 289-371 139-216 (230)
383 PRK11197 lldD L-lactate dehydr 94.9 0.23 5E-06 51.9 11.1 43 318-362 231-273 (381)
384 PRK07709 fructose-bisphosphate 94.9 0.53 1.1E-05 47.4 13.2 100 255-364 59-178 (285)
385 PRK06801 hypothetical protein; 94.9 0.89 1.9E-05 45.8 14.9 98 255-362 58-176 (286)
386 cd08205 RuBisCO_IV_RLP Ribulos 94.9 0.49 1.1E-05 49.4 13.4 140 202-363 128-289 (367)
387 PRK12857 fructose-1,6-bisphosp 94.8 1 2.2E-05 45.3 15.1 144 203-364 74-234 (284)
388 PF01729 QRPTase_C: Quinolinat 94.8 0.14 3.1E-06 47.4 8.5 91 259-370 66-163 (169)
389 PRK13398 3-deoxy-7-phosphohept 94.8 0.58 1.3E-05 46.6 13.3 117 249-371 117-240 (266)
390 PLN02363 phosphoribosylanthran 94.8 4.6 0.0001 40.0 19.6 183 156-371 51-237 (256)
391 TIGR01859 fruc_bis_ald_ fructo 94.8 0.43 9.3E-06 48.0 12.5 97 256-362 58-173 (282)
392 cd00954 NAL N-Acetylneuraminic 94.8 0.38 8.3E-06 48.3 12.3 126 214-351 19-153 (288)
393 cd00947 TBP_aldolase_IIB Tagat 94.8 0.43 9.3E-06 47.8 12.3 101 256-366 54-172 (276)
394 PF01116 F_bP_aldolase: Fructo 94.8 0.65 1.4E-05 46.8 13.7 144 203-364 73-237 (287)
395 cd03328 MR_like_3 Mandelate ra 94.7 0.37 8E-06 50.0 12.2 96 256-361 165-264 (352)
396 PRK05835 fructose-bisphosphate 94.7 1.3 2.8E-05 45.0 15.6 105 255-369 57-182 (307)
397 PRK08673 3-deoxy-7-phosphohept 94.7 0.65 1.4E-05 47.8 13.6 117 249-371 183-306 (335)
398 cd06557 KPHMT-like Ketopantoat 94.6 0.63 1.4E-05 46.0 12.8 151 158-339 18-200 (254)
399 PF01081 Aldolase: KDPG and KH 94.6 0.11 2.4E-06 49.3 7.1 148 205-370 9-184 (196)
400 PRK06806 fructose-bisphosphate 94.5 0.61 1.3E-05 46.8 12.7 101 256-366 59-179 (281)
401 TIGR01302 IMP_dehydrog inosine 94.5 0.29 6.2E-06 52.5 11.0 69 286-362 224-293 (450)
402 PRK07807 inosine 5-monophospha 94.5 0.27 5.9E-06 53.1 10.7 100 286-393 227-329 (479)
403 COG1954 GlpP Glycerol-3-phosph 94.5 0.16 3.6E-06 46.6 7.6 68 283-362 106-173 (181)
404 PRK01130 N-acetylmannosamine-6 94.5 1.2 2.5E-05 42.9 14.2 131 204-362 7-146 (221)
405 PRK06015 keto-hydroxyglutarate 94.4 0.26 5.6E-06 47.0 9.3 78 273-361 5-82 (201)
406 PRK06106 nicotinate-nucleotide 94.4 0.53 1.2E-05 47.2 11.9 87 259-366 180-270 (281)
407 cd04737 LOX_like_FMN L-Lactate 94.4 0.38 8.3E-06 49.8 11.2 42 318-361 207-248 (351)
408 COG0800 Eda 2-keto-3-deoxy-6-p 94.4 0.34 7.4E-06 46.3 9.9 77 273-360 14-90 (211)
409 TIGR02708 L_lactate_ox L-lacta 94.4 0.38 8.2E-06 50.1 11.1 44 318-363 214-257 (367)
410 PRK06559 nicotinate-nucleotide 94.4 0.46 1E-05 47.8 11.4 91 259-370 183-277 (290)
411 PRK08185 hypothetical protein; 94.3 1.7 3.7E-05 43.7 15.4 96 259-364 56-171 (283)
412 PRK11320 prpB 2-methylisocitra 94.3 0.35 7.7E-06 48.8 10.5 109 254-362 61-186 (292)
413 TIGR01182 eda Entner-Doudoroff 94.3 0.2 4.4E-06 47.8 8.4 88 272-373 8-95 (204)
414 cd08210 RLP_RrRLP Ribulose bis 94.3 0.79 1.7E-05 47.8 13.3 142 202-363 124-285 (364)
415 PF01070 FMN_dh: FMN-dependent 94.3 0.31 6.6E-06 50.7 10.3 90 271-362 109-253 (356)
416 cd03324 rTSbeta_L-fuconate_deh 94.3 0.8 1.7E-05 48.6 13.6 124 212-361 194-323 (415)
417 cd00945 Aldolase_Class_I Class 94.3 0.67 1.5E-05 43.0 11.8 128 214-365 11-152 (201)
418 PF01081 Aldolase: KDPG and KH 94.3 0.17 3.6E-06 48.1 7.6 78 273-361 9-86 (196)
419 TIGR00167 cbbA ketose-bisphosp 94.2 0.77 1.7E-05 46.3 12.8 100 255-364 59-180 (288)
420 PRK06543 nicotinate-nucleotide 94.2 0.63 1.4E-05 46.7 11.9 93 258-371 178-274 (281)
421 TIGR01036 pyrD_sub2 dihydrooro 94.2 0.47 1E-05 48.9 11.4 120 183-308 181-319 (335)
422 PRK05718 keto-hydroxyglutarate 94.2 0.34 7.3E-06 46.6 9.7 78 273-361 16-93 (212)
423 TIGR02320 PEP_mutase phosphoen 94.2 0.59 1.3E-05 47.0 11.8 108 255-362 62-189 (285)
424 PRK13396 3-deoxy-7-phosphohept 94.1 0.38 8.2E-06 49.7 10.5 107 249-363 191-307 (352)
425 cd03326 MR_like_1 Mandelate ra 94.1 0.92 2E-05 47.7 13.6 122 214-360 160-288 (385)
426 PRK07084 fructose-bisphosphate 94.1 1.5 3.3E-05 44.7 14.4 135 203-356 85-241 (321)
427 TIGR02534 mucon_cyclo muconate 94.1 0.97 2.1E-05 47.1 13.6 97 255-361 169-267 (368)
428 PLN02424 ketopantoate hydroxym 94.0 1.8 3.9E-05 44.2 14.7 149 160-339 43-224 (332)
429 cd03318 MLE Muconate Lactonizi 94.0 1.3 2.9E-05 45.9 14.4 96 256-361 171-268 (365)
430 KOG4175|consensus 93.9 1.6 3.4E-05 41.3 13.0 150 213-366 29-239 (268)
431 cd04729 NanE N-acetylmannosami 93.9 2 4.3E-05 41.3 14.5 134 201-362 8-150 (219)
432 PRK07084 fructose-bisphosphate 93.9 1.1 2.3E-05 45.8 13.0 91 271-371 85-193 (321)
433 PRK07107 inosine 5-monophospha 93.8 0.26 5.6E-06 53.5 9.1 73 285-364 241-314 (502)
434 TIGR02317 prpB methylisocitrat 93.8 0.53 1.1E-05 47.4 10.6 108 255-362 57-181 (285)
435 COG1411 Uncharacterized protei 93.8 0.32 6.9E-06 45.8 8.2 79 283-368 135-216 (229)
436 TIGR01303 IMP_DH_rel_1 IMP deh 93.8 0.16 3.6E-06 54.7 7.3 101 285-393 224-327 (475)
437 PRK09140 2-dehydro-3-deoxy-6-p 93.7 0.4 8.7E-06 45.9 9.2 81 272-363 10-91 (206)
438 PRK12858 tagatose 1,6-diphosph 93.7 0.44 9.6E-06 49.1 10.0 109 258-369 144-283 (340)
439 cd03327 MR_like_2 Mandelate ra 93.6 0.94 2E-05 46.7 12.5 140 203-361 108-251 (341)
440 cd04736 MDH_FMN Mandelate dehy 93.6 0.71 1.5E-05 48.0 11.4 42 319-362 223-264 (361)
441 PF03932 CutC: CutC family; I 93.6 1.6 3.4E-05 41.7 12.8 139 202-362 49-199 (201)
442 cd03320 OSBS o-Succinylbenzoat 93.5 1.3 2.9E-05 43.7 13.0 132 203-361 72-205 (263)
443 PF00697 PRAI: N-(5'phosphorib 93.5 0.58 1.3E-05 44.4 9.9 177 158-371 5-185 (197)
444 PF00218 IGPS: Indole-3-glycer 93.5 1.2 2.6E-05 44.1 12.3 91 285-394 68-158 (254)
445 PRK09016 quinolinate phosphori 93.4 0.92 2E-05 45.8 11.5 92 259-371 195-289 (296)
446 TIGR01521 FruBisAldo_II_B fruc 93.4 2.5 5.5E-05 43.6 14.8 142 204-355 74-247 (347)
447 cd03322 rpsA The starvation se 93.4 1.2 2.7E-05 46.2 12.9 92 260-361 150-243 (361)
448 PRK06978 nicotinate-nucleotide 93.3 1 2.2E-05 45.4 11.5 91 260-371 193-286 (294)
449 PRK06552 keto-hydroxyglutarate 93.3 0.53 1.2E-05 45.3 9.3 78 272-360 13-93 (213)
450 PRK09427 bifunctional indole-3 93.2 13 0.00028 40.0 20.5 66 296-370 372-437 (454)
451 TIGR01334 modD putative molybd 93.2 0.5 1.1E-05 47.3 9.2 97 257-370 173-271 (277)
452 COG4948 L-alanine-DL-glutamate 93.2 1.1 2.3E-05 46.7 12.2 123 214-361 143-268 (372)
453 COG3010 NanE Putative N-acetyl 93.2 4.3 9.3E-05 38.7 14.6 128 203-360 16-152 (229)
454 PRK05567 inosine 5'-monophosph 93.1 0.27 6E-06 53.2 7.9 69 286-362 228-297 (486)
455 TIGR00222 panB 3-methyl-2-oxob 93.1 3.2 6.9E-05 41.2 14.6 42 286-339 161-202 (263)
456 PRK13399 fructose-1,6-bisphosp 93.1 2.5 5.4E-05 43.7 14.3 142 203-354 75-248 (347)
457 cd00452 KDPG_aldolase KDPG and 93.0 0.61 1.3E-05 43.9 9.1 79 273-362 5-83 (190)
458 PRK02901 O-succinylbenzoate sy 93.0 0.91 2E-05 46.6 11.0 96 255-362 116-214 (327)
459 TIGR01740 pyrF orotidine 5'-ph 93.0 1 2.2E-05 43.2 10.7 77 213-307 8-85 (213)
460 PF01116 F_bP_aldolase: Fructo 93.0 0.43 9.3E-06 48.1 8.4 103 256-368 58-181 (287)
461 TIGR02319 CPEP_Pphonmut carbox 92.9 0.86 1.9E-05 46.0 10.5 108 255-362 61-185 (294)
462 PRK15072 bifunctional D-altron 92.9 1.6 3.4E-05 46.2 13.0 94 258-361 191-286 (404)
463 cd08209 RLP_DK-MTP-1-P-enolase 92.8 1.6 3.4E-05 45.9 12.6 145 202-364 122-287 (391)
464 PRK07114 keto-hydroxyglutarate 92.8 0.77 1.7E-05 44.5 9.6 87 273-373 16-106 (222)
465 TIGR02313 HpaI-NOT-DapA 2,4-di 92.8 0.37 8E-06 48.7 7.8 86 283-369 19-109 (294)
466 TIGR03326 rubisco_III ribulose 92.8 1.8 4E-05 45.8 13.1 139 202-364 142-307 (412)
467 cd04726 KGPDC_HPS 3-Keto-L-gul 92.7 2 4.4E-05 40.3 12.4 128 208-363 5-134 (202)
468 cd08207 RLP_NonPhot Ribulose b 92.7 1.4 3E-05 46.6 12.0 143 202-363 141-302 (406)
469 PRK07896 nicotinate-nucleotide 92.7 0.84 1.8E-05 46.0 10.0 90 260-370 187-282 (289)
470 PRK07315 fructose-bisphosphate 92.7 1.7 3.8E-05 43.9 12.4 99 256-366 60-177 (293)
471 PLN02716 nicotinate-nucleotide 92.6 1.6 3.5E-05 44.3 11.9 82 284-370 210-298 (308)
472 COG0329 DapA Dihydrodipicolina 92.5 0.42 9.1E-06 48.5 7.7 87 283-370 23-114 (299)
473 PRK09196 fructose-1,6-bisphosp 92.5 2.4 5.3E-05 43.7 13.2 135 203-347 75-241 (347)
474 COG0191 Fba Fructose/tagatose 92.4 4.2 9.2E-05 40.7 14.3 107 256-372 60-186 (286)
475 COG5016 Pyruvate/oxaloacetate 92.4 1.1 2.3E-05 46.8 10.3 103 253-362 121-231 (472)
476 cd03323 D-glucarate_dehydratas 92.4 2.2 4.8E-05 45.0 13.3 119 214-360 168-289 (395)
477 TIGR01927 menC_gamma/gm+ o-suc 92.4 3.3 7.2E-05 42.1 14.1 95 255-361 136-235 (307)
478 PRK03620 5-dehydro-4-deoxygluc 92.3 0.47 1E-05 48.1 7.9 85 283-369 26-115 (303)
479 COG2876 AroA 3-deoxy-D-arabino 92.3 1 2.2E-05 44.4 9.6 112 252-371 138-256 (286)
480 cd00408 DHDPS-like Dihydrodipi 92.3 13 0.00028 36.9 18.6 154 183-364 42-203 (281)
481 cd06556 ICL_KPHMT Members of t 92.3 1.4 2.9E-05 43.3 10.7 98 254-362 55-176 (240)
482 cd01571 NAPRTase_B Nicotinate 92.2 1.5 3.2E-05 44.6 11.3 102 259-371 170-282 (302)
483 TIGR01361 DAHP_synth_Bsub phos 92.2 1.9 4E-05 42.9 11.7 108 183-304 115-228 (260)
484 TIGR02321 Pphn_pyruv_hyd phosp 92.2 1.8 3.8E-05 43.8 11.7 52 255-306 59-111 (290)
485 PRK02714 O-succinylbenzoate sy 92.2 3.5 7.6E-05 42.1 14.1 96 256-361 146-246 (320)
486 cd00951 KDGDH 5-dehydro-4-deox 92.1 0.53 1.1E-05 47.4 7.9 85 283-369 19-108 (289)
487 PRK14040 oxaloacetate decarbox 92.1 23 0.0005 39.4 22.1 105 254-364 121-232 (593)
488 PRK04180 pyridoxal biosynthesi 92.0 0.77 1.7E-05 45.9 8.6 112 161-305 35-148 (293)
489 TIGR03128 RuMP_HxlA 3-hexulose 92.0 4.1 8.8E-05 38.5 13.5 129 207-364 3-135 (206)
490 PLN02417 dihydrodipicolinate s 92.0 0.54 1.2E-05 47.1 7.8 86 283-369 20-110 (280)
491 PF13714 PEP_mutase: Phosphoen 92.0 0.81 1.7E-05 44.8 8.7 104 255-362 53-175 (238)
492 COG0157 NadC Nicotinate-nucleo 91.9 1 2.3E-05 44.7 9.4 94 259-371 174-271 (280)
493 TIGR01521 FruBisAldo_II_B fruc 91.9 4.2 9.2E-05 42.0 14.1 109 256-368 57-197 (347)
494 PRK07455 keto-hydroxyglutarate 91.9 0.78 1.7E-05 43.2 8.2 80 273-363 13-92 (187)
495 cd00952 CHBPH_aldolase Trans-o 91.9 0.54 1.2E-05 47.9 7.7 86 283-369 27-117 (309)
496 cd06557 KPHMT-like Ketopantoat 91.9 1.3 2.9E-05 43.7 10.2 127 221-361 24-177 (254)
497 PRK09196 fructose-1,6-bisphosp 91.7 2.1 4.6E-05 44.1 11.8 103 256-364 59-195 (347)
498 PRK06096 molybdenum transport 91.7 2.2 4.7E-05 42.9 11.6 89 258-367 175-269 (284)
499 PLN02826 dihydroorotate dehydr 91.7 1.9 4.1E-05 45.7 11.7 100 202-307 261-371 (409)
500 COG4981 Enoyl reductase domain 91.7 4 8.6E-05 44.1 13.8 196 145-369 31-260 (717)
No 1
>KOG2335|consensus
Probab=100.00 E-value=9.3e-62 Score=480.33 Aligned_cols=300 Identities=50% Similarity=0.833 Sum_probs=272.9
Q ss_pred chhhhhcCCCceEEecCCCCCCHHHHHHHHHcCCCeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCC
Q psy7343 70 SDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSP 149 (487)
Q Consensus 70 ~~~~~~~~~~~~~LAPMag~td~pFR~l~~~~Gadl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~ 149 (487)
.-||.+++.+..++|||+++|++|||+|+|+||++++|||||.|+.|+++.+++...|++.++++|+++|+
T Consensus 10 ~~f~~~~~~~~ri~APMvd~S~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf--------- 80 (358)
T KOG2335|consen 10 AIFWSKQGRPKRIVAPMVDYSELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQF--------- 80 (358)
T ss_pred HhhhhhcCCcccccCCcccccHHHHHHHHHHhCCceEechHHHHHHHhcCccchhhhcccCCCCCceEEEE---------
Confidence 36777887887799999999999999999999999999999999999998888777777777777777774
Q ss_pred ccccccccCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCcC
Q psy7343 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHC 229 (487)
Q Consensus 150 ~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~ 229 (487)
+|+|++.+.++|++++.++
T Consensus 81 -------------------------------------------------------------~~ndp~~ll~Aa~lv~~y~ 99 (358)
T KOG2335|consen 81 -------------------------------------------------------------GGNDPENLLKAARLVQPYC 99 (358)
T ss_pred -------------------------------------------------------------cCCCHHHHHHHHHHhhhhc
Confidence 3347788999999999999
Q ss_pred cEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 230 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 230 d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
|+||||||||++++++|+||+.|+.+|+++.+++++++..++.||++|||++.|.+++.+++++++++|++.++|||||+
T Consensus 100 D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr 179 (358)
T KOG2335|consen 100 DGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTR 179 (358)
T ss_pred CcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHhhCC-CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccc--cCCCCCcHHHHHHH
Q psy7343 310 DQRGMNTGLASWEHITAVRKALT-IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--TGQTRPAWELASEY 386 (487)
Q Consensus 310 ~~~g~~~g~~~~~~i~~i~~~~~-iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf--~~~~~~~~~~~~~~ 386 (487)
.++|..+++++|+.|+.|++.+. +||++||+|.+.+|+.++++.+|+||||+|||+|.||++| .+...+.|+++.+|
T Consensus 180 ~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~~~~~~~~~~~~~~~~ 259 (358)
T KOG2335|consen 180 EQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALFLTAGYGPTPWGCVEEY 259 (358)
T ss_pred HhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhhccCCCCCCHHHHHHHH
Confidence 99988899999999999999997 9999999999999999999889999999999999999999 77788899999999
Q ss_pred HHHHHHcChh--HHHHHHHHHHHhHhhcCCCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q psy7343 387 LDLVAQYPVR--LQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLR 441 (487)
Q Consensus 387 l~~~~~~~~~--~~~~r~~l~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~ 441 (487)
+++..+++.. ...+|.|++++++.++. ....+|..+...++.+.+.++++++.
T Consensus 260 l~~~~e~~g~~~~~~~~~Hl~~m~~~~~~--~~~~~r~~~~~~~~~~~~~~~l~~~~ 314 (358)
T KOG2335|consen 260 LDIAREFGGLSSFSLIRHHLFKMLRPLLS--IHQDLRRDLAALNSCESVIDFLEELV 314 (358)
T ss_pred HHHHHHcCCCchhhHHHHHHHHHHHHHHh--hhHHHHHHHhhccchhhHHHHHHHHH
Confidence 9999999743 88999999999987654 44578999988887777777777443
No 2
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-55 Score=444.88 Aligned_cols=291 Identities=38% Similarity=0.586 Sum_probs=254.2
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCC-CeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPM 156 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Ga-dl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApm 156 (487)
+++++||||+|+||+|||+++++||+ |++|||||++++++++.+++...+...+
T Consensus 10 ~~~~~lAPM~gvtd~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~------------------------- 64 (323)
T COG0042 10 RNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELE------------------------- 64 (323)
T ss_pred cCcEEEecCCCCccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCC-------------------------
Confidence 78999999999999999999999999 9999999999999876654433322211
Q ss_pred cCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEee
Q psy7343 157 VDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDIN 235 (487)
Q Consensus 157 a~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN 235 (487)
.+.|++|||+|+||+.+.++|+++++. +|+||||
T Consensus 65 ---------------------------------------------~e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN 99 (323)
T COG0042 65 ---------------------------------------------EERPVAVQLGGSDPELLAEAAKIAEELGADIIDLN 99 (323)
T ss_pred ---------------------------------------------CCCCEEEEecCCCHHHHHHHHHHHHhcCCCEEeee
Confidence 245677888888999999999999887 7999999
Q ss_pred cCCCcceeeccCccccccCChHHHHHHHHHHhhhcc-CcEEEEeeccccccc--HHHHHHHHHHcCCcEEEEEccccCCC
Q psy7343 236 IGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQDVNK--TVEYARMLERAGCQLLAVHGRTVDQR 312 (487)
Q Consensus 236 ~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iPV~vKiR~~~d~~~--~~e~a~~le~~G~d~I~VhgRt~~~~ 312 (487)
||||+..+.+++.|+.|+.+|+++.+++++++++++ +||++|+|+|+|..+ ..+++++++++|++.++|||||+.++
T Consensus 100 ~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~ 179 (323)
T COG0042 100 CGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQG 179 (323)
T ss_pred CCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhc
Confidence 999998878888899999999999999999999995 999999999998775 88999999999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHhhCC-CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCC--------CCCc----
Q psy7343 313 GMNTGLASWEHITAVRKALT-IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ--------TRPA---- 379 (487)
Q Consensus 313 g~~~g~~~~~~i~~i~~~~~-iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~--------~~~~---- 379 (487)
|.++++|+.|+++++.++ +|||+||||.|.+|+.++++.+|||+||+|||++.|||+|.++ .++.
T Consensus 180 --y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i~~~~~g~~~~~~~~e~ 257 (323)
T COG0042 180 --YLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPPTLAEV 257 (323)
T ss_pred --CCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHHHHhhcCCCCCCCHHHH
Confidence 889999999999999998 9999999999999999999999999999999999999998852 1122
Q ss_pred HHHHHHHHHHHHHcC--hhHHHHHHHHHHHhHhhcCCCCcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy7343 380 WELASEYLDLVAQYP--VRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRER 443 (487)
Q Consensus 380 ~~~~~~~l~~~~~~~--~~~~~~r~~l~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~ 443 (487)
.+.+.+|++.+.++. ..+..+|+|+.+|++ +++++.++|+.+.+..+..++.++++.+...
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~r~h~~~~~~---~~~~a~~~r~~~~~~~~~~~~~~~l~~~~~~ 320 (323)
T COG0042 258 LDILREHLELLLEYYGKKGLRRLRKHLGYYLK---GLPGARELRRALNKAEDGAEVRRALEAVFEE 320 (323)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHhh---cCccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 345667777776665 577889999988765 5779999999999999999998888887654
No 3
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=100.00 E-value=1.8e-51 Score=414.69 Aligned_cols=287 Identities=29% Similarity=0.408 Sum_probs=245.2
Q ss_pred ccccccccCCCchHHHHHHHHhC-CccceeccccchhhhcChhHHHHH---Hh---cCCCCCCeeeeeccCCHHHHHHHH
Q psy7343 150 RFILAPMVDASELPWRLLSRRYG-SHLCYTPMVSAHQFIADKKLRQEI---LM---STPEDRPLIIQFCGNDSKNLTEAA 222 (487)
Q Consensus 150 ~~~lApma~~td~~fr~i~~~~G-a~l~~t~~v~~~~Ll~~~~~~~~~---l~---~~~~~~Pv~Vqi~g~d~~~~~~aa 222 (487)
++++|||+|+||.+||.+++++| +++++||||++.++..+.+....+ +. ..+.+.|+++||+|++++.+.++|
T Consensus 2 ~~~lAPMag~td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~~p~~~~~aA 81 (312)
T PRK10550 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQYPQWLAENA 81 (312)
T ss_pred CeEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccCCHHHHHHHH
Confidence 57899999999999999999998 799999999988877765544322 22 445679999999999999999999
Q ss_pred HhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeeccccc-ccHHHHHHHHHHcC
Q psy7343 223 KLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDV-NKTVEYARMLERAG 298 (487)
Q Consensus 223 ~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~-~~~~e~a~~le~~G 298 (487)
+++++. +|+||||||||+..+.+.+.|+.|+++++++.++++++++++ ++||++|+|+|++. ++..++++.++++|
T Consensus 82 ~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~G 161 (312)
T PRK10550 82 ARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAG 161 (312)
T ss_pred HHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcC
Confidence 988876 999999999998755555568899999999999999999988 49999999998754 45789999999999
Q ss_pred CcEEEEEccccCCCCCCCCCC-CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCC-
Q psy7343 299 CQLLAVHGRTVDQRGMNTGLA-SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT- 376 (487)
Q Consensus 299 ~d~I~VhgRt~~~~g~~~g~~-~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~- 376 (487)
+|.|+||+||+.+. |+|++ +|+.++++++.+++|||+||||.|++|++++++.+|||+||||||+++|||+|+++.
T Consensus 162 vd~i~Vh~Rt~~~~--y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~ 239 (312)
T PRK10550 162 ATELVVHGRTKEDG--YRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKY 239 (312)
T ss_pred CCEEEECCCCCccC--CCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhhc
Confidence 99999999998775 88875 999999999999999999999999999999998899999999999999999999753
Q ss_pred ---CCcH----HHHHHHHHHHHHc-C--hhHHHHHHHHHHHhHhhcCCCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q psy7343 377 ---RPAW----ELASEYLDLVAQY-P--VRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLR 441 (487)
Q Consensus 377 ---~~~~----~~~~~~l~~~~~~-~--~~~~~~r~~l~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~ 441 (487)
.+.+ +.+.+|+++..++ + ..+..+|+|+.+|.+ ++++++++|+++.+++|.+|+.++++++.
T Consensus 240 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~---~~~~~~~~r~~i~~~~~~~e~~~~~~~~~ 311 (312)
T PRK10550 240 NEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLGYLRK---EYDEATELFQEIRALNNSPDIARAIQAID 311 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHh---cCCcHHHHHHHHHcCCCHHHHHHHHHhhc
Confidence 2233 2445666654443 2 235678999887655 67899999999999999999999998763
No 4
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=100.00 E-value=1.5e-51 Score=416.01 Aligned_cols=282 Identities=40% Similarity=0.645 Sum_probs=218.9
Q ss_pred ccccccCCCchHHHHHHHHhCCc-cceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCc-C
Q psy7343 152 ILAPMVDASELPWRLLSRRYGSH-LCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH-C 229 (487)
Q Consensus 152 ~lApma~~td~~fr~i~~~~Ga~-l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~ 229 (487)
++|||+++||.+||.+++.+|++ +++|||++++.+++..++....+...+.+.|+++||+|+|++.+.++|+++.+. +
T Consensus 1 ~LAPM~g~td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~ 80 (309)
T PF01207_consen 1 ILAPMAGVTDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGF 80 (309)
T ss_dssp -E---TTTSSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-
T ss_pred CccCCCCCchHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEeeccHHHHHHHHHhhhccCC
Confidence 47999999999999999999997 999999999999998888888888888889999999999999999999999994 9
Q ss_pred cEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccc--cccHHHHHHHHHHcCCcEEEEEcc
Q psy7343 230 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD--VNKTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 230 d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d--~~~~~e~a~~le~~G~d~I~VhgR 307 (487)
|+||||||||+..+.++++|+.|+.+|+.+.++++++++.+++||++|+|++++ .+++.++++.++++|+++|+||||
T Consensus 81 ~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~R 160 (309)
T PF01207_consen 81 DGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGR 160 (309)
T ss_dssp SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS
T ss_pred cEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecC
Confidence 999999999998777777899999999999999999999999999999999987 567899999999999999999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccC---C----CCCc-
Q psy7343 308 TVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTG---Q----TRPA- 379 (487)
Q Consensus 308 t~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~---~----~~~~- 379 (487)
|+.|. |.|+++|+.++++++.+++|||+||||.|.+|+.++++.+||||||||||++.|||+|.+ . ..+.
T Consensus 161 t~~q~--~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~~~~~~~~ 238 (309)
T PF01207_consen 161 TRKQR--YKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFREIDQIKEGEPEPFP 238 (309)
T ss_dssp -TTCC--CTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHHHTT--S-
T ss_pred chhhc--CCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhhhhhhccCCCCCCC
Confidence 99998 899999999999999999999999999999999999988899999999999999999983 2 1111
Q ss_pred -----HHHHHHHHHHHHH-c--ChhHHHHHHHHHHHhHhhcCCCCcHHHHHHHHhcCCHHHHHHHHH
Q psy7343 380 -----WELASEYLDLVAQ-Y--PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVD 438 (487)
Q Consensus 380 -----~~~~~~~l~~~~~-~--~~~~~~~r~~l~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~ 438 (487)
.+.+.+|++.+.+ + ...+..+++|+.+|+ .++++++++|+.+.++++.+++.+.++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~---~~~~~~~~~r~~l~~~~~~~e~~~~l~ 302 (309)
T PF01207_consen 239 PIAERLDIILRHYDYMEEFYGEEKALRQMRKHLKWYF---KGFPGARKFRRELNKCKTLEEFLELLE 302 (309)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCCCT---TTSTTHHHHHHHHCCH-SHHHHHHHH-
T ss_pred chhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH---ccCCcHHHHHHHHHhhCCHHHHhhhhc
Confidence 2344555554433 3 234556666665544 357899999999999999999999988
No 5
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=100.00 E-value=3.2e-50 Score=408.23 Aligned_cols=290 Identities=27% Similarity=0.366 Sum_probs=251.1
Q ss_pred CCccccccccCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCC
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEP 227 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~ 227 (487)
+.++++|||+++||.+||.+++++|+++++|||+++..+....++....+...+.+.|+++|++|++++++.++|+++++
T Consensus 9 ~~~~~lAPM~g~td~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~~~~aa~~~~~ 88 (321)
T PRK10415 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVE 88 (321)
T ss_pred CCCEEecCCCCCCcHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999988766555554444444556899999999999999999998766
Q ss_pred c-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccc--cHHHHHHHHHHcCCcEEEE
Q psy7343 228 H-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAV 304 (487)
Q Consensus 228 ~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~--~~~e~a~~le~~G~d~I~V 304 (487)
. +|+||||+|||+..+.+.+.|+.+++||+++.++++++++++++||++|+|.|++.+ +..++++.++++|+|+|+|
T Consensus 89 ~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~v 168 (321)
T PRK10415 89 SGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTI 168 (321)
T ss_pred CCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEE
Confidence 5 899999999999654455569999999999999999999999999999999998654 5789999999999999999
Q ss_pred EccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCC--------
Q psy7343 305 HGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT-------- 376 (487)
Q Consensus 305 hgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~-------- 376 (487)
|||++.+. +.|.++|+.++++++.+++|||+||||.|++|++++++.+|||+||+|||++.|||+|+++.
T Consensus 169 h~rt~~~~--~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~~~~~~ 246 (321)
T PRK10415 169 HGRTRACL--FNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGEL 246 (321)
T ss_pred ecCccccc--cCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHHHHhCCCC
Confidence 99998775 88999999999999999999999999999999999998899999999999999999997641
Q ss_pred --CCcH----HHHHHHHHHHHHc-Ch--hHHHHHHHHHHHhHhhcCCCCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy7343 377 --RPAW----ELASEYLDLVAQY-PV--RLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRE 442 (487)
Q Consensus 377 --~~~~----~~~~~~l~~~~~~-~~--~~~~~r~~l~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~ 442 (487)
.+.+ +.+.+|++.+.+| ++ .+..+|+|+.||++ ++++++++|+++.+++|.+|+.++++++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~---~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 318 (321)
T PRK10415 247 LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQ---EHAPNDQFRRTFNAIEDASEQLEALEAYFE 318 (321)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHh---cCCchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1223 4556677666554 43 46789999988765 678999999999999999999999998775
No 6
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=6.2e-50 Score=404.28 Aligned_cols=284 Identities=26% Similarity=0.430 Sum_probs=238.9
Q ss_pred ccccccccCCCchHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCc
Q psy7343 150 RFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH 228 (487)
Q Consensus 150 ~~~lApma~~td~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~ 228 (487)
++++|||+|+||.+||.+++.+|+ ++++|||+++.+++++..+ ..+...+.+.|+++||+|+|++.+.++|+.+++.
T Consensus 2 ~~~lAPM~g~Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~--~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~ 79 (318)
T TIGR00742 2 RFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKK--DILKFSPEESPVALQLGGSDPNDLAKCAKIAEKR 79 (318)
T ss_pred CEEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHH--HHcccCCCCCcEEEEEccCCHHHHHHHHHHHHhC
Confidence 678999999999999999999998 9999999999999887655 4677778889999999999999999999999876
Q ss_pred -CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccccc----ccHHHHHHHHHHcCCcEEE
Q psy7343 229 -CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDV----NKTVEYARMLERAGCQLLA 303 (487)
Q Consensus 229 -~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~----~~~~e~a~~le~~G~d~I~ 303 (487)
+|+||||||||+....++++|+.|+++|+++.++++++++++++||++|+|++++. ++..++++.++++|++.|+
T Consensus 80 g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~it 159 (318)
T TIGR00742 80 GYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFI 159 (318)
T ss_pred CCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEE
Confidence 89999999999987778888999999999999999999999999999999998754 3567889999999999999
Q ss_pred EEccccCCCCCCCCC-------CCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCC
Q psy7343 304 VHGRTVDQRGMNTGL-------ASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 304 VhgRt~~~~g~~~g~-------~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
|||||+..+ +|+|. ++|+.++++++.+ ++|||+||||.|.+|+.++++ |||+||||||++.|||+|.++
T Consensus 160 vHgRt~~~q-g~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~--g~dgVMigRgal~nP~if~~~ 236 (318)
T TIGR00742 160 VHARKAWLS-GLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS--HVDGVMVGREAYENPYLLANV 236 (318)
T ss_pred EeCCchhhc-CCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh--CCCEEEECHHHHhCCHHHHHH
Confidence 999997332 25544 4899999999988 899999999999999999993 899999999999999999864
Q ss_pred C----------CCcHHHHHHHHHHH---HHcChhHHHHHHHHHHHhHhhcCCCCcHHHHHHHHhcCCH-HHHHHHHHHHH
Q psy7343 376 T----------RPAWELASEYLDLV---AQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHI-KDLRKAVDMLR 441 (487)
Q Consensus 376 ~----------~~~~~~~~~~l~~~---~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~r~~l~~~~~~-~~~~~~~~~~~ 441 (487)
. ++..+.+..+++++ ..+...+..+|+|+.+|++ ++++++++|+++.++.+- .+..+++++..
T Consensus 237 ~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~---g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 313 (318)
T TIGR00742 237 DREIFNETDEILTRKEIVEQMLPYIEEYLSQGLSLNHITRHLLGLFQ---GKPGAKQWRRYLSENAPKAGAGIEVLETAL 313 (318)
T ss_pred HHHhcCCCCCCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHc---cCCCHHHHHHHHHhcccCCCCcHHHHHHHH
Confidence 2 12234444444443 3334567899999988765 678999999999886543 24445555544
No 7
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=8.3e-47 Score=383.92 Aligned_cols=290 Identities=35% Similarity=0.543 Sum_probs=252.6
Q ss_pred CCccccccccCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCC
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEP 227 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~ 227 (487)
..|+++|||+++||.+||.+++++|+++++|||+++..+..+.+.....+...+.+.|+++||.|++++++.++|+++++
T Consensus 7 ~~~l~lAPm~~~t~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~~~~aa~~~~~ 86 (319)
T TIGR00737 7 KSRVVLAPMAGVTDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMAEAAKINEE 86 (319)
T ss_pred CCCEEecCCCCCCcHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHHHHHHHHHHHh
Confidence 56899999999999999999999999999999999999988777777777777788999999999999999999999988
Q ss_pred c-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccc--cHHHHHHHHHHcCCcEEEE
Q psy7343 228 H-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN--KTVEYARMLERAGCQLLAV 304 (487)
Q Consensus 228 ~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~--~~~e~a~~le~~G~d~I~V 304 (487)
+ +|+||||+|||........+|+.++++++++.++++++++.+++||++|+|++++.. +..++++.+++.|+|+|+|
T Consensus 87 ~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~v 166 (319)
T TIGR00737 87 LGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTL 166 (319)
T ss_pred CCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEE
Confidence 7 999999999997544444456778899999999999999999999999999987543 5789999999999999999
Q ss_pred EccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCC--------
Q psy7343 305 HGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT-------- 376 (487)
Q Consensus 305 hgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~-------- 376 (487)
|+|+..+. +.|+++|+.++++++.+++||++||||.|++|+.++++.+|||+||+||+++.|||+|.++.
T Consensus 167 h~r~~~~~--~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~~~~~ 244 (319)
T TIGR00737 167 HGRTRAQG--YSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGKY 244 (319)
T ss_pred Eccccccc--CCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHhCCCC
Confidence 99987654 78889999999999999999999999999999999998899999999999999999997541
Q ss_pred --CCc----HHHHHHHHHHHHH-cCh--hHHHHHHHHHHHhHhhcCCCCcHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy7343 377 --RPA----WELASEYLDLVAQ-YPV--RLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRE 442 (487)
Q Consensus 377 --~~~----~~~~~~~l~~~~~-~~~--~~~~~r~~l~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~ 442 (487)
.+. .+.+.+|++.+.+ |+. .+..+|+|+.+|++ ++++++++|+++.+++|++++.++++++.+
T Consensus 245 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T TIGR00737 245 KPPPTFAEKLDAILRHLQLLADYYGESKGLRIARKHIAWYLK---GFPGNAALRQTLNHASSFQEVKQLLDDFFE 316 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHh---cCCcHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 112 2456677776654 443 46788999877664 578999999999999999999999998764
No 8
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=100.00 E-value=6.5e-46 Score=378.48 Aligned_cols=276 Identities=29% Similarity=0.475 Sum_probs=235.3
Q ss_pred CCCccccccccCCCchHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhh
Q psy7343 147 GSPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLA 225 (487)
Q Consensus 147 g~~~~~lApma~~td~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~ 225 (487)
+.+++++|||+|+||.+||.+++.+|+ ++++|||+++.+++++. ....+...+.+.|+++||+|+|++.+.++|+++
T Consensus 9 ~~~~~~lAPM~g~td~~fR~~~~~~g~~~~~~temv~~~~l~~~~--~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~ 86 (333)
T PRK11815 9 PSRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGD--RERLLAFDPEEHPVALQLGGSDPADLAEAAKLA 86 (333)
T ss_pred CCCCEEEeCCCCCcCHHHHHHHHHhCCCCEEEECCEEeccccccC--HHHHhccCCCCCcEEEEEeCCCHHHHHHHHHHH
Confidence 467899999999999999999999997 89999999999998875 456677777889999999999999999999999
Q ss_pred CCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccc----cHHHHHHHHHHcCCc
Q psy7343 226 EPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN----KTVEYARMLERAGCQ 300 (487)
Q Consensus 226 ~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~----~~~e~a~~le~~G~d 300 (487)
+++ +|+||||+|||..+.+++++|+.+++|++++.++++++++++++||++|+|++++.. +..++++.++++|+|
T Consensus 87 ~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d 166 (333)
T PRK11815 87 EDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCD 166 (333)
T ss_pred HhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCC
Confidence 887 899999999999888888899999999999999999999999999999999986542 467889999999999
Q ss_pred EEEEEccccCCCCCCC-------CCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccc
Q psy7343 301 LLAVHGRTVDQRGMNT-------GLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372 (487)
Q Consensus 301 ~I~VhgRt~~~~g~~~-------g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf 372 (487)
+|+||+|+....+ +. ++++|+.++++++.+ ++|||+||||.|++|+.++++ +||+||||||++.|||+|
T Consensus 167 ~i~vh~Rt~~~~g-~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~--~aDgVmIGRa~l~nP~~~ 243 (333)
T PRK11815 167 TFIVHARKAWLKG-LSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ--HVDGVMIGRAAYHNPYLL 243 (333)
T ss_pred EEEEcCCchhhcC-CCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh--cCCEEEEcHHHHhCCHHH
Confidence 9999999863222 44 347899999999986 999999999999999999994 699999999999999999
Q ss_pred cCCC---------CCcH-HHHHHHHHHH---HHcChhHHHHHHHHHHHhHhhcCCCCcHHHHHHHHhcCCH
Q psy7343 373 TGQT---------RPAW-ELASEYLDLV---AQYPVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNHI 430 (487)
Q Consensus 373 ~~~~---------~~~~-~~~~~~l~~~---~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~r~~l~~~~~~ 430 (487)
+++. .+.+ +.+..+++++ ..++..+..+|+|+.+|++ ++++++++|+++.+..+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~---~~~~~~~~r~~~~~~~~~ 311 (333)
T PRK11815 244 AEVDRELFGEPAPPLSRSEVLEAMLPYIERHLAQGGRLNHITRHMLGLFQ---GLPGARAWRRYLSENAHK 311 (333)
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHc---CCCCHHHHHHHHHhhccc
Confidence 8642 1223 3444444443 3345567889999987765 678999999999887543
No 9
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=100.00 E-value=1.5e-41 Score=329.63 Aligned_cols=224 Identities=48% Similarity=0.800 Sum_probs=199.8
Q ss_pred ceEEecCCCCCCHHHHHHHHHcCCCeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccccCC
Q psy7343 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVDA 159 (487)
Q Consensus 80 ~~~LAPMag~td~pFR~l~~~~Gadl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApma~~ 159 (487)
+++||||+|+||+|||++|++||+|++||||++++.++..++.....+
T Consensus 1 ~~~~aPm~~~~~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~-------------------------------- 48 (231)
T cd02801 1 KLILAPMVGVTDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLL-------------------------------- 48 (231)
T ss_pred CeEeCCCCCCcCHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhh--------------------------------
Confidence 478999999999999999999999999999999999876654330000
Q ss_pred CchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCC
Q psy7343 160 SELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGC 238 (487)
Q Consensus 160 td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~Gc 238 (487)
.....+.|+++||.|++++++.++|++++++ +|+||||+||
T Consensus 49 --------------------------------------~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~ 90 (231)
T cd02801 49 --------------------------------------TRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGC 90 (231)
T ss_pred --------------------------------------ccCccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 0112357899999998999999999999885 9999999999
Q ss_pred CcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccc-cHHHHHHHHHHcCCcEEEEEccccCCCCCCCC
Q psy7343 239 PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN-KTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317 (487)
Q Consensus 239 P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~-~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g 317 (487)
|..+.+++.+|+.+.++++.+.++++++++.+++||++|+|.+++.. +..++++.+++.|+|.|+||+|+..+. +.+
T Consensus 91 p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~--~~~ 168 (231)
T cd02801 91 PSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQR--YSG 168 (231)
T ss_pred CHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHc--CCC
Confidence 99999999999999999999999999999999999999999998776 889999999999999999999987663 556
Q ss_pred CCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCC
Q psy7343 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 318 ~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
+.+|+.++++++.+++||++||||.|++|+.++++.+|||+||+||+++.||++|+++
T Consensus 169 ~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~~ 226 (231)
T cd02801 169 PADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREI 226 (231)
T ss_pred CCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHhh
Confidence 7899999999999999999999999999999999777999999999999999999865
No 10
>KOG2333|consensus
Probab=100.00 E-value=3.7e-37 Score=311.10 Aligned_cols=258 Identities=23% Similarity=0.367 Sum_probs=206.3
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCCCeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCcccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMV 157 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Gadl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApma 157 (487)
+.+++|||+..++|+|||+||+++|||++|.||..+..|+++....+.++..+..|.-++||+
T Consensus 264 r~K~~LaPLTTvGNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQl----------------- 326 (614)
T KOG2333|consen 264 RDKKYLAPLTTVGNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQL----------------- 326 (614)
T ss_pred ccceeeccccccCCccHHHHHHHhCCccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEe-----------------
Confidence 468999999999999999999999999999999999999888877777777666666666664
Q ss_pred CCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCC-c-CcEEEee
Q psy7343 158 DASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEP-H-CDGIDIN 235 (487)
Q Consensus 158 ~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~-~-~d~IdiN 235 (487)
.|+.++....+|+.+.+ . +|.||||
T Consensus 327 -----------------------------------------------------ag~~pdt~~kaaq~i~e~~~VDFIDlN 353 (614)
T KOG2333|consen 327 -----------------------------------------------------AGSKPDTAAKAAQVIAETCDVDFIDLN 353 (614)
T ss_pred -----------------------------------------------------ccCChHHHHHHHHHHHhhcceeeeecc
Confidence 33344455555655544 3 8999999
Q ss_pred cCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeeccc--ccccHHHHHHHHH-HcCCcEEEEEccccCC
Q psy7343 236 IGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQ--DVNKTVEYARMLE-RAGCQLLAVHGRTVDQ 311 (487)
Q Consensus 236 ~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~--d~~~~~e~a~~le-~~G~d~I~VhgRt~~~ 311 (487)
+|||...+.+-+.|++|+++|..+.++++++...+ .+|++||+|.|. +..-..++...+. +.|+++|++|||.++|
T Consensus 354 ~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQ 433 (614)
T KOG2333|consen 354 MGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQ 433 (614)
T ss_pred CCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccCchhHHHHHHHHhhccCcceEEecCchhhh
Confidence 99998766555569999999999999999888766 469999999974 3345667777776 8999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcC-CcEEEeccccccCcccccCCCCC---------c
Q psy7343 312 RGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTG-VAGVMTAEGNLYNPALFTGQTRP---------A 379 (487)
Q Consensus 312 ~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~G-ad~VmiGRa~l~~P~lf~~~~~~---------~ 379 (487)
+ |+..++|++|.++.+.+ .+|+|+||||.|++|..+-+...+ +|+||||||+|-.||||.+++.. .
T Consensus 434 R--YTK~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFtEIkeqq~wD~sSteR 511 (614)
T KOG2333|consen 434 R--YTKSANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVDSVMIARGALIKPWIFTEIKEQQHWDISSTER 511 (614)
T ss_pred h--hhcccChHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCCcceEEeeccccccchHhhhhhhhhcCCccchHH
Confidence 9 99999999999998876 499999999999999887775555 99999999999999999988531 2
Q ss_pred HHHHHHHHHHHHHc-C---hhHHHHHHHHHHH
Q psy7343 380 WELASEYLDLVAQY-P---VRLQYARGHVFNM 407 (487)
Q Consensus 380 ~~~~~~~l~~~~~~-~---~~~~~~r~~l~~~ 407 (487)
.++++.|-++--+| | .++...|+++..+
T Consensus 512 ldiL~df~nyGLeHWGSDt~GVetTRRFlLE~ 543 (614)
T KOG2333|consen 512 LDILKDFCNYGLEHWGSDTKGVETTRRFLLEF 543 (614)
T ss_pred HHHHHHHHhhhhhhcCCccccHHHHHHHHHHH
Confidence 34555555553333 3 2456667766544
No 11
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=100.00 E-value=1.3e-34 Score=281.07 Aligned_cols=213 Identities=20% Similarity=0.251 Sum_probs=169.6
Q ss_pred ccccccccCCCchHHHH-HHHHhCCccc------eeccccchhhhc--------C--hhHHHHHHh-cCCCCCCeeeeec
Q psy7343 150 RFILAPMVDASELPWRL-LSRRYGSHLC------YTPMVSAHQFIA--------D--KKLRQEILM-STPEDRPLIIQFC 211 (487)
Q Consensus 150 ~~~lApma~~td~~fr~-i~~~~Ga~l~------~t~~v~~~~Ll~--------~--~~~~~~~l~-~~~~~~Pv~Vqi~ 211 (487)
|+++|||+|+||.+|+. ++..+|+++. .+.|..+..+.. + .+...+.+. ....+.|+++|++
T Consensus 1 ~~~lApMag~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~p~~vqi~ 80 (233)
T cd02911 1 PVALASMAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNVLVGVNVR 80 (233)
T ss_pred CceeeecCCCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCCeEEEEec
Confidence 57899999999999997 6666665433 333333222221 1 011222222 1223569999999
Q ss_pred cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHH
Q psy7343 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 212 g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a 291 (487)
|++++.+.++++.+++..++||||+|||+......+.|+.|+.||+.+.++++++++ .++||++|+|.+++ .+..+++
T Consensus 81 g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~-~~~~~la 158 (233)
T cd02911 81 SSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVD-VDDEELA 158 (233)
T ss_pred CCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcC-cCHHHHH
Confidence 999999999999998888999999999997555555699999999999999999997 59999999999988 7899999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+.++++|+|.|++ ++..+. +.++|+.+++++ +++|||+||||.|.+|+.+++ ++|||+||+||+ .|||+
T Consensus 159 ~~l~~aG~d~ihv--~~~~~g----~~ad~~~I~~i~--~~ipVIgnGgI~s~eda~~~l-~~GaD~VmiGR~--~~p~~ 227 (233)
T cd02911 159 RLIEKAGADIIHV--DAMDPG----NHADLKKIRDIS--TELFIIGNNSVTTIESAKEMF-SYGADMVSVARA--SLPEN 227 (233)
T ss_pred HHHHHhCCCEEEE--CcCCCC----CCCcHHHHHHhc--CCCEEEEECCcCCHHHHHHHH-HcCCCEEEEcCC--CCchH
Confidence 9999999998755 432221 367899999987 789999999999999999999 489999999999 99999
Q ss_pred ccCC
Q psy7343 372 FTGQ 375 (487)
Q Consensus 372 f~~~ 375 (487)
|.++
T Consensus 228 ~~~~ 231 (233)
T cd02911 228 IEWL 231 (233)
T ss_pred HHHh
Confidence 9864
No 12
>KOG2334|consensus
Probab=100.00 E-value=4.5e-32 Score=271.35 Aligned_cols=265 Identities=34% Similarity=0.531 Sum_probs=221.7
Q ss_pred chhhhhcCCCceEEecCCCCCCHHHHHHHHHcCCCeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCC
Q psy7343 70 SDAWTQLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSP 149 (487)
Q Consensus 70 ~~~~~~~~~~~~~LAPMag~td~pFR~l~~~~Gadl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~ 149 (487)
+-+| .++++||||++++++|.|+|+-+||||++|||.|....|+..-++.+. ..+ .-
T Consensus 6 ~l~y----~nk~iLApMvr~G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~Ne-----------alg--------tI 62 (477)
T KOG2334|consen 6 SLFY----RNKLILAPMVRAGELPMRLLALQYGADLVYTPEIVDKKLIECIRVENE-----------ALG--------TI 62 (477)
T ss_pred hhhh----cCcEeeehHHHhccchHHHHHHHhccceecChhhhhHHHHhccccccc-----------ccc--------ce
Confidence 3566 899999999999999999999999999999999999888765443222 111 00
Q ss_pred ccccccccCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCC-CCCCeeeeeccCCHHHHHHHHHhhCCc
Q psy7343 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP-EDRPLIIQFCGNDSKNLTEAAKLAEPH 228 (487)
Q Consensus 150 ~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~-~~~Pv~Vqi~g~d~~~~~~aa~~~~~~ 228 (487)
. +..|-. +...|| .++ +...++.|+..++++-..++|+++.+.
T Consensus 63 D-fv~p~~--~~vvfr---------------------------------~~~~e~~rlilQ~gT~sa~lA~e~A~lv~nD 106 (477)
T KOG2334|consen 63 D-FVDPSD--STVVFR---------------------------------TCPAENSRLILQIGTASAELALEAAKLVDND 106 (477)
T ss_pred e-eecCCc--ceEEEE---------------------------------echhhcCeEEEEecCCcHHHHHHHHHHhhcc
Confidence 0 011100 001111 111 134688999999999999999999998
Q ss_pred CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 229 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 229 ~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
..+||+|||||.....|++.|+.++.+++.+..|+..+.+...+||++|+|+..+.+++.++.+.+..+|+..|.||+||
T Consensus 107 vsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~vh~rt 186 (477)
T KOG2334|consen 107 VSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITVHCRT 186 (477)
T ss_pred cccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEecCCcccHHHHHHHHHhcCCceEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHhhCC-CcEEEcCCCCC---HHHHHHHHHhcCCcEEEeccccccCcccccCCCCCc-HHHH
Q psy7343 309 VDQRGMNTGLASWEHITAVRKALT-IPVIANGNIQC---LADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPA-WELA 383 (487)
Q Consensus 309 ~~~~g~~~g~~~~~~i~~i~~~~~-iPVi~nGgI~s---~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~-~~~~ 383 (487)
+..+ ...+++.+.++++...++ +|||+||++.+ +.|+....+.+|+++||++|++..||.+|......+ .+.+
T Consensus 187 ~d~r--~~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n~SiF~~eG~~~~~~~~ 264 (477)
T KOG2334|consen 187 RDER--NQEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESNPSIFREEGCLSEKEVI 264 (477)
T ss_pred cccC--CCCCCCHHHHHHHHHHhccceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcCCceeeecCCchHHHHH
Confidence 9887 556788899999999986 99999999999 778888888899999999999999999999776544 4678
Q ss_pred HHHHHHHHHcCh
Q psy7343 384 SEYLDLVAQYPV 395 (487)
Q Consensus 384 ~~~l~~~~~~~~ 395 (487)
++|+.++.+|..
T Consensus 265 ~~fl~~a~~~dn 276 (477)
T KOG2334|consen 265 REFLRLAVQYDN 276 (477)
T ss_pred HHHHHHHHHHhh
Confidence 899999988853
No 13
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.97 E-value=5.3e-30 Score=246.73 Aligned_cols=161 Identities=18% Similarity=0.152 Sum_probs=144.9
Q ss_pred CCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec
Q psy7343 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI 280 (487)
Q Consensus 201 ~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~ 280 (487)
....|+++|+++.+++++.++++.+++.+|+||||+|||+....+.+.|+.|+.||+.+.++++++++ .++||++|+|+
T Consensus 65 ~~~~~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR~ 143 (231)
T TIGR00736 65 ESRALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKPIFVKIRG 143 (231)
T ss_pred hhcCCEEEEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCcEEEEeCC
Confidence 35679999999999999999999999899999999999998666666799999999999999999995 58999999999
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC-CcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT-IPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~-iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
+++..+..++++.++++|+|+|+||++... .+.++|+.++++++.++ +|||+||||+|.+|+.++++ +|||+|
T Consensus 144 ~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g-----~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~-~GAd~V 217 (231)
T TIGR00736 144 NCIPLDELIDALNLVDDGFDGIHVDAMYPG-----KPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLK-AGADFV 217 (231)
T ss_pred CCCcchHHHHHHHHHHcCCCEEEEeeCCCC-----CchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHH-hCCCeE
Confidence 887678899999999999999999865321 12279999999999995 99999999999999999995 999999
Q ss_pred EeccccccC
Q psy7343 360 MTAEGNLYN 368 (487)
Q Consensus 360 miGRa~l~~ 368 (487)
|+||+++.+
T Consensus 218 mvgR~~l~~ 226 (231)
T TIGR00736 218 SVARAILKG 226 (231)
T ss_pred EEcHhhccC
Confidence 999999977
No 14
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.96 E-value=1.3e-28 Score=248.54 Aligned_cols=239 Identities=23% Similarity=0.310 Sum_probs=185.6
Q ss_pred CCcccccc-ccCCCchHHHHHHHHhCCcccee---------------------ccccchhhhcC-hhHHHHHHh--cCCC
Q psy7343 148 SPRFILAP-MVDASELPWRLLSRRYGSHLCYT---------------------PMVSAHQFIAD-KKLRQEILM--STPE 202 (487)
Q Consensus 148 ~~~~~lAp-ma~~td~~fr~i~~~~Ga~l~~t---------------------~~v~~~~Ll~~-~~~~~~~l~--~~~~ 202 (487)
.+|+++|| +.+.++..++.++.. |++++.+ .|++..++... .+...+.+. ....
T Consensus 11 ~npi~~aag~~~~~~~~~~~~~~~-G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~~~~ 89 (300)
T TIGR01037 11 KNPLILASGIMGSGVESLRRIDRS-GAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVREEF 89 (300)
T ss_pred CCCCEeCCcCCCCCHHHHHHHHHc-CCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHhccC
Confidence 56899999 468888889887766 8887777 34444444442 233233332 2233
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCc---CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPH---CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~---~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR 279 (487)
+.|+++||.|.+++++.++++.++++ +|+||||+|||+.. + +|..+..+++.+.++++++++.+++||++|++
T Consensus 90 ~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~---~-~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~ 165 (300)
T TIGR01037 90 PTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK---G-GGIAIGQDPELSADVVKAVKDKTDVPVFAKLS 165 (300)
T ss_pred CCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC---C-CccccccCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 56999999999999999999999853 79999999999852 3 47778889999999999999999999999997
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccC--------------CCCCCCCCCCH----HHHHHHHhhCCCcEEEcCCC
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVD--------------QRGMNTGLASW----EHITAVRKALTIPVIANGNI 341 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~--------------~~g~~~g~~~~----~~i~~i~~~~~iPVi~nGgI 341 (487)
. +.++..++++.++++|+|+|++|+++.. ..++++|++.| +.++++++.+++|||++|||
T Consensus 166 ~--~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI 243 (300)
T TIGR01037 166 P--NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGI 243 (300)
T ss_pred C--ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4 4457889999999999999999864321 12356777655 78899999999999999999
Q ss_pred CCHHHHHHHHHhcCCcEEEeccccccCcccccCCCCCcHHHHHHHHHHHHHcC-hhHHHHH
Q psy7343 342 QCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYP-VRLQYAR 401 (487)
Q Consensus 342 ~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~~~~~~~~l~~~~~~~-~~~~~~r 401 (487)
.|++|+.+++ .+|||+||+||+++.||++|.+ +.++..+++++.+ ..+.+++
T Consensus 244 ~s~~da~~~l-~~GAd~V~igr~~l~~p~~~~~-------i~~~l~~~~~~~g~~~~~e~~ 296 (300)
T TIGR01037 244 TSFEDALEFL-MAGASAVQVGTAVYYRGFAFKK-------IIEGLIAFLKAEGFTSIEELI 296 (300)
T ss_pred CCHHHHHHHH-HcCCCceeecHHHhcCchHHHH-------HHHHHHHHHHHcCCCCHHHHh
Confidence 9999999999 5899999999999999999873 4455555666554 2344443
No 15
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.96 E-value=6.2e-31 Score=265.90 Aligned_cols=207 Identities=29% Similarity=0.479 Sum_probs=150.2
Q ss_pred EEecCCCCCCHHHHHHHHHcCCC-eEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccccC-C
Q psy7343 82 ILAPMVDASELPWRLLSRRYGSH-LCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVD-A 159 (487)
Q Consensus 82 ~LAPMag~td~pFR~l~~~~Gad-l~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApma~-~ 159 (487)
+||||+|+||+|||++|+++|++ ++|||||+++++++.+++....+...+.++|+++|++ |+.+..++.++. +
T Consensus 1 ~LAPM~g~td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~-----g~~~~~~~~aa~~~ 75 (309)
T PF01207_consen 1 ILAPMAGVTDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLF-----GNDPEDLAEAAEIV 75 (309)
T ss_dssp -E---TTTSSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE------S-HHHHHHHHHHH
T ss_pred CccCCCCCchHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEe-----eccHHHHHHHHHhh
Confidence 59999999999999999999997 9999999999999999999999999999999999985 344554444443 3
Q ss_pred CchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHhc--CCCCCCeeeeec-cCC--HHHHHHHHHhhCCcCc
Q psy7343 160 SELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILMS--TPEDRPLIIQFC-GND--SKNLTEAAKLAEPHCD 230 (487)
Q Consensus 160 td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~~--~~~~~Pv~Vqi~-g~d--~~~~~~aa~~~~~~~d 230 (487)
.+..+..|+.|+| ||.+++. |++|+++++.+.++++. ...+.||+||+| |.+ .+++.+.+++++++
T Consensus 76 ~~~~~~~IDlN~G---CP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~-- 150 (309)
T PF01207_consen 76 AELGFDGIDLNMG---CPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDA-- 150 (309)
T ss_dssp CCTT-SEEEEEE------SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHT--
T ss_pred hccCCcEEeccCC---CCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhc--
Confidence 4557778899999 9999886 88999999999998862 334689999999 655 67899999999988
Q ss_pred EEEeecCCCcceeeccCccccc---cCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcc
Q psy7343 231 GIDINIGCPQMVAKRGHYGAYL---QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 231 ~IdiN~GcP~~i~~~gr~G~~l---~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgR 307 (487)
|+ ..+++|+|+..+. ..||+.+.+ +++.+++||++|+ |+.+..++.+.++.+|+|+||| ||
T Consensus 151 ------G~-~~i~vH~Rt~~q~~~~~a~w~~i~~----i~~~~~ipvi~NG----dI~s~~d~~~~~~~tg~dgvMi-gR 214 (309)
T PF01207_consen 151 ------GV-SAITVHGRTRKQRYKGPADWEAIAE----IKEALPIPVIANG----DIFSPEDAERMLEQTGADGVMI-GR 214 (309)
T ss_dssp ------T---EEEEECS-TTCCCTS---HHHHHH----CHHC-TSEEEEES----S--SHHHHHHHCCCH-SSEEEE-SH
T ss_pred ------cc-ceEEEecCchhhcCCcccchHHHHH----HhhcccceeEEcC----ccCCHHHHHHHHHhcCCcEEEE-ch
Confidence 66 6788888887765 456776665 5666789999998 9999999999999999999999 99
Q ss_pred ccCCCCC
Q psy7343 308 TVDQRGM 314 (487)
Q Consensus 308 t~~~~g~ 314 (487)
.....+|
T Consensus 215 gal~nP~ 221 (309)
T PF01207_consen 215 GALGNPW 221 (309)
T ss_dssp HHCC-CC
T ss_pred hhhhcCH
Confidence 7665543
No 16
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.96 E-value=1.9e-29 Score=254.71 Aligned_cols=205 Identities=20% Similarity=0.249 Sum_probs=155.0
Q ss_pred ceEEecCCCCCCHHHHHHHHHcC-CCeEEccceeccccccCcHHHH---HHhh---hCCCCCceeeeeccccCCCCCccc
Q psy7343 80 RFILAPMVDASELPWRLLSRRYG-SHLCYTPMVSAHQFIADKKLRQ---EILM---STPEDRPLIIQRTIFPRLGSPRFI 152 (487)
Q Consensus 80 ~~~LAPMag~td~pFR~l~~~~G-adl~~TEMi~a~~l~~~~~~~~---~~~~---~~~~e~p~~vQl~~~~~~g~~~~~ 152 (487)
+++||||+|+||+|||++|+++| +|++|||||+++++...++.+. .++. ..+.++|+++|++ |+.+..
T Consensus 2 ~~~lAPMag~td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~-----g~~p~~ 76 (312)
T PRK10550 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLL-----GQYPQW 76 (312)
T ss_pred CeEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEec-----cCCHHH
Confidence 68999999999999999999999 8999999999999988765553 2333 5677899999974 333433
Q ss_pred cccc-cCCCchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHhc----CCCCCCeeeeec-cCC-HHHHHHH
Q psy7343 153 LAPM-VDASELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILMS----TPEDRPLIIQFC-GND-SKNLTEA 221 (487)
Q Consensus 153 lApm-a~~td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~~----~~~~~Pv~Vqi~-g~d-~~~~~~a 221 (487)
++-. ..+.+.+|..++.|+| ||+++++ |++|+++++...++++. .+.+.||+||++ |.+ .+++.++
T Consensus 77 ~~~aA~~~~~~g~d~IdiN~G---CP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~ 153 (312)
T PRK10550 77 LAENAARAVELGSWGVDLNCG---CPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEI 153 (312)
T ss_pred HHHHHHHHHHcCCCEEEEeCC---CCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHH
Confidence 3322 2334456777888999 8888775 66899999998888852 233589999998 543 4557889
Q ss_pred HHhhCCc-CcEEEeecCCCcceeeccCccccc---c-CChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHH
Q psy7343 222 AKLAEPH-CDGIDINIGCPQMVAKRGHYGAYL---Q-DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLER 296 (487)
Q Consensus 222 a~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l---~-~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~ 296 (487)
+++++++ .|.|.+|. |+..+. . .||+.+.+ +++.+++||++|+ |+.+..++.+.++.
T Consensus 154 a~~l~~~Gvd~i~Vh~----------Rt~~~~y~g~~~~~~~i~~----ik~~~~iPVi~nG----dI~t~~da~~~l~~ 215 (312)
T PRK10550 154 ADAVQQAGATELVVHG----------RTKEDGYRAEHINWQAIGE----IRQRLTIPVIANG----EIWDWQSAQQCMAI 215 (312)
T ss_pred HHHHHhcCCCEEEECC----------CCCccCCCCCcccHHHHHH----HHhhcCCcEEEeC----CcCCHHHHHHHHhc
Confidence 9999887 56666654 333222 1 26765555 5666789999998 88899999999999
Q ss_pred cCCcEEEEEccccCC
Q psy7343 297 AGCQLLAVHGRTVDQ 311 (487)
Q Consensus 297 ~G~d~I~VhgRt~~~ 311 (487)
+|||+||| ||....
T Consensus 216 ~g~DgVmi-GRg~l~ 229 (312)
T PRK10550 216 TGCDAVMI-GRGALN 229 (312)
T ss_pred cCCCEEEE-cHHhHh
Confidence 99999999 996433
No 17
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.95 E-value=6.9e-29 Score=251.12 Aligned_cols=208 Identities=19% Similarity=0.286 Sum_probs=152.1
Q ss_pred ceEEecCCCCCCHHHHHHHHHcCC-CeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccccC
Q psy7343 80 RFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVD 158 (487)
Q Consensus 80 ~~~LAPMag~td~pFR~l~~~~Ga-dl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApma~ 158 (487)
+++||||+|+||+|||.+|++||+ +++||||++++++++++++ .++.++++++|+++|+++ +.+..++..+.
T Consensus 2 ~~~lAPM~g~Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~--~~l~~~~~e~p~~vQl~g-----~~p~~~~~aA~ 74 (318)
T TIGR00742 2 RFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKK--DILKFSPEESPVALQLGG-----SDPNDLAKCAK 74 (318)
T ss_pred CEEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHH--HHcccCCCCCcEEEEEcc-----CCHHHHHHHHH
Confidence 689999999999999999999998 9999999999999987765 577888999999999753 33433333332
Q ss_pred -CCchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHhc--CCCCCCeeeeec-cCCH----HHHHHHHHhhC
Q psy7343 159 -ASELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILMS--TPEDRPLIIQFC-GNDS----KNLTEAAKLAE 226 (487)
Q Consensus 159 -~td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~~--~~~~~Pv~Vqi~-g~d~----~~~~~aa~~~~ 226 (487)
+.+.+|+.|+.|+| ||.+.+. |++|+++++.+.++++. ...+.||+||++ |.+. ++..++++.++
T Consensus 75 ~~~~~g~d~IDlN~G---CP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~ 151 (318)
T TIGR00742 75 IAEKRGYDEINLNVG---CPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVS 151 (318)
T ss_pred HHHhCCCCEEEEECC---CCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHH
Confidence 23445677888999 8888776 88999999999998863 334689999999 5432 45567788887
Q ss_pred Cc-CcEEEeecCCCcceeeccCcccc----ccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCc
Q psy7343 227 PH-CDGIDINIGCPQMVAKRGHYGAY----LQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQ 300 (487)
Q Consensus 227 ~~-~d~IdiN~GcP~~i~~~gr~G~~----l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d 300 (487)
++ .+.|.+|..-.. ..+-.|.+ -..+|+.+.+ +++.+ ++||++|+ |+.+..++.+.++ |||
T Consensus 152 ~~G~~~itvHgRt~~---~qg~sg~~~~~~~~~~~~~i~~----vk~~~~~ipVi~NG----dI~s~~da~~~l~--g~d 218 (318)
T TIGR00742 152 GKGCQNFIVHARKAW---LSGLSPKENREIPPLRYERVYQ----LKKDFPHLTIEING----GIKNSEQIKQHLS--HVD 218 (318)
T ss_pred HcCCCEEEEeCCchh---hcCCCccccccCCchhHHHHHH----HHHhCCCCcEEEEC----CcCCHHHHHHHHh--CCC
Confidence 76 455544433210 00100110 0125665554 55555 79999998 8889999988885 899
Q ss_pred EEEEEccccCC
Q psy7343 301 LLAVHGRTVDQ 311 (487)
Q Consensus 301 ~I~VhgRt~~~ 311 (487)
+||| ||....
T Consensus 219 gVMi-gRgal~ 228 (318)
T TIGR00742 219 GVMV-GREAYE 228 (318)
T ss_pred EEEE-CHHHHh
Confidence 9999 996544
No 18
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.95 E-value=3.3e-28 Score=247.18 Aligned_cols=207 Identities=23% Similarity=0.350 Sum_probs=157.4
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCCCeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCcccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMV 157 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Gadl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApma 157 (487)
+++++||||+|+||+|||++|++||+|++||||++++.+...+.++...+.+.+++.|+++|++ |+.+..++-++
T Consensus 9 ~~~~~lAPM~g~td~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~-----g~~~~~~~~aa 83 (321)
T PRK10415 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIA-----GSDPKEMADAA 83 (321)
T ss_pred CCCEEecCCCCCCcHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEe-----CCCHHHHHHHH
Confidence 5689999999999999999999999999999999999887776666666666677789999974 33343333333
Q ss_pred C-CCchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHh--cCCCCCCeeeeec-cCCH--HHHHHHHHhhCC
Q psy7343 158 D-ASELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILM--STPEDRPLIIQFC-GNDS--KNLTEAAKLAEP 227 (487)
Q Consensus 158 ~-~td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~--~~~~~~Pv~Vqi~-g~d~--~~~~~aa~~~~~ 227 (487)
. +.+..+..++.|+| ||.+++. |++|+++++...++++ ....+.||++|++ |.+. .+..++++.+++
T Consensus 84 ~~~~~~g~d~IdlN~g---CP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~ 160 (321)
T PRK10415 84 RINVESGAQIIDINMG---CPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAED 160 (321)
T ss_pred HHHHHCCCCEEEEeCC---CCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHH
Confidence 2 23445667888999 8877654 7889999999998886 2334789999998 5443 367788888887
Q ss_pred c-CcEEEeecCCCcceeeccCccccc---cCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEE
Q psy7343 228 H-CDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLA 303 (487)
Q Consensus 228 ~-~d~IdiN~GcP~~i~~~gr~G~~l---~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~ 303 (487)
. .|.|.+| +++..+. ..+|+.+.+ +++.+++||++++ |+.+..++.+.++.+|+|+||
T Consensus 161 ~G~d~i~vh----------~rt~~~~~~G~a~~~~i~~----ik~~~~iPVI~nG----gI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 161 CGIQALTIH----------GRTRACLFNGEAEYDSIRA----VKQKVSIPVIANG----DITDPLKARAVLDYTGADALM 222 (321)
T ss_pred hCCCEEEEe----------cCccccccCCCcChHHHHH----HHHhcCCcEEEeC----CCCCHHHHHHHHhccCCCEEE
Confidence 7 5555555 4433222 346765554 5667789999998 888999999999999999999
Q ss_pred EEccccCC
Q psy7343 304 VHGRTVDQ 311 (487)
Q Consensus 304 VhgRt~~~ 311 (487)
+ ||....
T Consensus 223 i-GR~~l~ 229 (321)
T PRK10415 223 I-GRAAQG 229 (321)
T ss_pred E-ChHhhc
Confidence 9 996543
No 19
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.94 E-value=4.5e-26 Score=229.77 Aligned_cols=192 Identities=24% Similarity=0.365 Sum_probs=158.5
Q ss_pred ceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccC-CHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCcccccc
Q psy7343 176 CYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGN-DSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 253 (487)
Q Consensus 176 ~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~-d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~ 253 (487)
..++|++...+....+...+..+..+ +.|+++|+.|. +++++.++++.+++. +|+||||+|||+....++ .|+.+.
T Consensus 73 ~n~e~~s~~~~~~~~~~~~~~~~~~~-~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~-~G~~l~ 150 (299)
T cd02940 73 NNIELISEKPLEYWLKEIRELKKDFP-DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERG-MGAAVG 150 (299)
T ss_pred cCCccccccCHHHHHHHHHHHHhhCC-CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCC-Cchhhc
Confidence 45567776655443333333333333 68999999997 999999999999875 899999999998744444 588888
Q ss_pred CChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEE---------------------ccccCCC
Q psy7343 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVH---------------------GRTVDQR 312 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~Vh---------------------gRt~~~~ 312 (487)
.|++.+.++++++++.+++||++|+|. +..+..++++.++++|+|+|+++ +|+. .
T Consensus 151 ~~~~~~~~iv~~v~~~~~~Pv~vKl~~--~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~--~ 226 (299)
T cd02940 151 QDPELVEEICRWVREAVKIPVIAKLTP--NITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTT--Y 226 (299)
T ss_pred cCHHHHHHHHHHHHHhcCCCeEEECCC--CchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCC--c
Confidence 999999999999999999999999976 44578899999999999999854 3433 3
Q ss_pred CCCCCCCC----HHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc-CcccccC
Q psy7343 313 GMNTGLAS----WEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY-NPALFTG 374 (487)
Q Consensus 313 g~~~g~~~----~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~-~P~lf~~ 374 (487)
++++|++. |+.+.++++.+ ++|||++|||.|.+|+.+++ .+|||+||+||+++. .|.+|.+
T Consensus 227 gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l-~aGA~~V~i~ta~~~~g~~~~~~ 294 (299)
T cd02940 227 GGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFL-LLGASVVQVCTAVMNQGFTIVDD 294 (299)
T ss_pred CcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHH-HcCCChheEceeecccCCcHHHH
Confidence 45899887 89999999999 89999999999999999999 699999999999998 7988864
No 20
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.94 E-value=4.1e-25 Score=222.57 Aligned_cols=240 Identities=22% Similarity=0.269 Sum_probs=180.0
Q ss_pred CCccccccccCCCchHHHHHHHHhCCccceeccccchhhhcCh-----------------------hHHHHHHh-cCCCC
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK-----------------------KLRQEILM-STPED 203 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~-----------------------~~~~~~l~-~~~~~ 203 (487)
.+|+.+|.-...++..++.+....|++...+++++.+....++ .....+.+ ....+
T Consensus 10 ~nP~~~aag~~~~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~ 89 (296)
T cd04740 10 KNPVILASGTFGFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLPWLREFG 89 (296)
T ss_pred CCCCEECCCCCCCHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHHHhhcCC
Confidence 4577776322225566777766656888888888744322121 11222222 13356
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~ 282 (487)
.|+++||++.+++++.++|++++++ +|+||||++||... ++ |.++..+++.+.++++++++.+++||++|++.
T Consensus 90 ~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~---~~-g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~-- 163 (296)
T cd04740 90 TPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVK---GG-GMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP-- 163 (296)
T ss_pred CcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCC---CC-cccccCCHHHHHHHHHHHHhccCCCEEEEeCC--
Confidence 8999999999999999999999888 99999999999742 22 66777899999999999999999999999854
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEcccc---------C-----CCCCCCCCCC----HHHHHHHHhhCCCcEEEcCCCCCH
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTV---------D-----QRGMNTGLAS----WEHITAVRKALTIPVIANGNIQCL 344 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~---------~-----~~g~~~g~~~----~~~i~~i~~~~~iPVi~nGgI~s~ 344 (487)
+.++..++++.++++|+|+|.+++++. . ..++++|++. ++.++++++.+++|||++|||.|+
T Consensus 164 ~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~ 243 (296)
T cd04740 164 NVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASG 243 (296)
T ss_pred CchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCH
Confidence 445788999999999999999865432 1 1145666653 588999999999999999999999
Q ss_pred HHHHHHHHhcCCcEEEeccccccCcccccCCCCCcHHHHHHHHHHHHHcC-hhHHHHH
Q psy7343 345 ADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYP-VRLQYAR 401 (487)
Q Consensus 345 ~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~~~~~~~~l~~~~~~~-~~~~~~r 401 (487)
+|+.+++ ..|||+||+||+++.||++|.+ +.+...+++++.+ ..+..++
T Consensus 244 ~da~~~l-~~GAd~V~igra~l~~p~~~~~-------i~~~l~~~~~~~g~~~~~~~~ 293 (296)
T cd04740 244 EDALEFL-MAGASAVQVGTANFVDPEAFKE-------IIEGLEAYLDEEGIKSIEELV 293 (296)
T ss_pred HHHHHHH-HcCCCEEEEchhhhcChHHHHH-------HHHHHHHHHHHcCCCCHHHHh
Confidence 9999999 6899999999999999999873 3444455565554 2344443
No 21
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.92 E-value=1.1e-23 Score=212.71 Aligned_cols=179 Identities=27% Similarity=0.449 Sum_probs=149.2
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCc--CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR 279 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~--~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR 279 (487)
.+.|+++||.|+++++|.++|++++++ +|+||||++||+. .+| |..+..+++.+.++++++++.+++||++|++
T Consensus 90 ~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~--~~g--g~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 165 (301)
T PRK07259 90 FDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNV--KHG--GMAFGTDPELAYEVVKAVKEVVKVPVIVKLT 165 (301)
T ss_pred cCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCC--CCC--ccccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 368999999999999999999999887 8999999999973 232 5667789999999999999999999999996
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccC--------------CCCCCCCCC----CHHHHHHHHhhCCCcEEEcCCC
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVD--------------QRGMNTGLA----SWEHITAVRKALTIPVIANGNI 341 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~--------------~~g~~~g~~----~~~~i~~i~~~~~iPVi~nGgI 341 (487)
. +.++..++++.++++|+|+|++++++.. ..++++|++ .++.++++++.+++|||++|||
T Consensus 166 ~--~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI 243 (301)
T PRK07259 166 P--NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGI 243 (301)
T ss_pred C--CchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCC
Confidence 4 4457889999999999999998654321 123455543 5789999999999999999999
Q ss_pred CCHHHHHHHHHhcCCcEEEeccccccCcccccCCCCCcHHHHHHHHHHHHHcC
Q psy7343 342 QCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYP 394 (487)
Q Consensus 342 ~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~~~~~~~~l~~~~~~~ 394 (487)
.|++|+.+++ ..|||+||+||+++.||++|.+ +.++..+++++.+
T Consensus 244 ~~~~da~~~l-~aGAd~V~igr~ll~~P~~~~~-------i~~~l~~~~~~~g 288 (301)
T PRK07259 244 SSAEDAIEFI-MAGASAVQVGTANFYDPYAFPK-------IIEGLEAYLDKYG 288 (301)
T ss_pred CCHHHHHHHH-HcCCCceeEcHHHhcCcHHHHH-------HHHHHHHHHHHcC
Confidence 9999999999 5899999999999999999874 3444445666554
No 22
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.92 E-value=1.5e-25 Score=228.81 Aligned_cols=208 Identities=21% Similarity=0.292 Sum_probs=150.0
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCC-CeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPM 156 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Ga-dl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApm 156 (487)
+++++||||+|+||+|||.+|+++|+ +++||||++++++++++ +..++..++.++|+++|+++ +.+..++..
T Consensus 10 ~~~~~lAPM~g~td~~fR~~~~~~g~~~~~~temv~~~~l~~~~--~~~~l~~~~~e~p~~vQl~g-----~~p~~~~~a 82 (333)
T PRK11815 10 SRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGD--RERLLAFDPEEHPVALQLGG-----SDPADLAEA 82 (333)
T ss_pred CCCEEEeCCCCCcCHHHHHHHHHhCCCCEEEECCEEeccccccC--HHHHhccCCCCCcEEEEEeC-----CCHHHHHHH
Confidence 77899999999999999999999998 99999999999999876 56778888899999999853 333333322
Q ss_pred cC-CCchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHhc--CCCCCCeeeeec-cCC----HHHHHHHHHh
Q psy7343 157 VD-ASELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILMS--TPEDRPLIIQFC-GND----SKNLTEAAKL 224 (487)
Q Consensus 157 a~-~td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~~--~~~~~Pv~Vqi~-g~d----~~~~~~aa~~ 224 (487)
+. +.+.+|..|+.|+| ||.+.+. |+.|+++++...++++. ...+.||+||++ +.+ .++..++++.
T Consensus 83 A~~~~~~g~d~IdlN~g---CP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~ 159 (333)
T PRK11815 83 AKLAEDWGYDEINLNVG---CPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDT 159 (333)
T ss_pred HHHHHhcCCCEEEEcCC---CCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHH
Confidence 22 23345666777888 8877665 77899999999888863 233689999997 322 3456778888
Q ss_pred hCCc-CcEEEeecCCCcceeeccCccc----cccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcC
Q psy7343 225 AEPH-CDGIDINIGCPQMVAKRGHYGA----YLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAG 298 (487)
Q Consensus 225 ~~~~-~d~IdiN~GcP~~i~~~gr~G~----~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G 298 (487)
++++ ++.|.+|..-.. ..+-.|. .-..+|+.+.+ +++.+ ++||++++ ++.+..++.+.++ |
T Consensus 160 l~~aG~d~i~vh~Rt~~---~~g~~~~~~~~~~~~~~~~i~~----v~~~~~~iPVI~nG----gI~s~eda~~~l~--~ 226 (333)
T PRK11815 160 VAEAGCDTFIVHARKAW---LKGLSPKENREIPPLDYDRVYR----LKRDFPHLTIEING----GIKTLEEAKEHLQ--H 226 (333)
T ss_pred HHHhCCCEEEEcCCchh---hcCCCccccccCCCcCHHHHHH----HHHhCCCCeEEEEC----CcCCHHHHHHHHh--c
Confidence 8776 566665532110 0110000 01235666554 55554 89999998 7778888888876 6
Q ss_pred CcEEEEEcccc
Q psy7343 299 CQLLAVHGRTV 309 (487)
Q Consensus 299 ~d~I~VhgRt~ 309 (487)
||+||| ||..
T Consensus 227 aDgVmI-GRa~ 236 (333)
T PRK11815 227 VDGVMI-GRAA 236 (333)
T ss_pred CCEEEE-cHHH
Confidence 999999 9954
No 23
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.92 E-value=2.5e-25 Score=226.42 Aligned_cols=209 Identities=25% Similarity=0.428 Sum_probs=153.8
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCCCeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCcccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMV 157 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Gadl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApma 157 (487)
+++++||||+|+||+|||.+|+++|+|++||||++++.+.+..++....+...+.++|+++|+++. ++..+.....
T Consensus 7 ~~~l~lAPm~~~t~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~----~~~~~~~aa~ 82 (319)
T TIGR00737 7 KSRVVLAPMAGVTDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGS----DPDTMAEAAK 82 (319)
T ss_pred CCCEEecCCCCCCcHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCC----CHHHHHHHHH
Confidence 668999999999999999999999999999999999999988888888888888999999998532 2222222222
Q ss_pred CCCchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHhc--CCCCCCeeeeec-cCC--HHHHHHHHHhhCCc
Q psy7343 158 DASELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILMS--TPEDRPLIIQFC-GND--SKNLTEAAKLAEPH 228 (487)
Q Consensus 158 ~~td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~~--~~~~~Pv~Vqi~-g~d--~~~~~~aa~~~~~~ 228 (487)
.+.+.+|+.+..|+| ||++.+. |+.++++++...++++. ...+.||+||++ |.+ ..+..+.++.+++.
T Consensus 83 ~~~~~G~d~IelN~g---cP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~ 159 (319)
T TIGR00737 83 INEELGADIIDINMG---CPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDA 159 (319)
T ss_pred HHHhCCCCEEEEECC---CCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHh
Confidence 222334555666777 7766554 66788899988888862 334689999998 433 23567788888776
Q ss_pred -CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcc
Q psy7343 229 -CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 229 -~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgR 307 (487)
.|.|.+|...+ .+++. ...+++ .++.+++.+++||++++ ++.+..++.+.++.+|+|+||+ ||
T Consensus 160 G~d~i~vh~r~~-----~~~~~--~~~~~~----~i~~i~~~~~ipvi~nG----gI~~~~da~~~l~~~gad~Vmi-gR 223 (319)
T TIGR00737 160 GAQAVTLHGRTR-----AQGYS--GEANWD----IIARVKQAVRIPVIGNG----DIFSPEDAKAMLETTGCDGVMI-GR 223 (319)
T ss_pred CCCEEEEEcccc-----cccCC--CchhHH----HHHHHHHcCCCcEEEeC----CCCCHHHHHHHHHhhCCCEEEE-Ch
Confidence 67777763221 11111 112444 45556777889999998 7888999999998999999999 88
Q ss_pred cc
Q psy7343 308 TV 309 (487)
Q Consensus 308 t~ 309 (487)
..
T Consensus 224 ~~ 225 (319)
T TIGR00737 224 GA 225 (319)
T ss_pred hh
Confidence 54
No 24
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.92 E-value=4.6e-24 Score=224.95 Aligned_cols=179 Identities=21% Similarity=0.377 Sum_probs=151.6
Q ss_pred CCCeeeeeccC-CHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec
Q psy7343 203 DRPLIIQFCGN-DSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI 280 (487)
Q Consensus 203 ~~Pv~Vqi~g~-d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~ 280 (487)
+.|+++||.|. +++++.++++.+++. +|+||||+|||++...++ .|+.+..+++.+.++++++++.+++||++|++.
T Consensus 99 ~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~-~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p 177 (420)
T PRK08318 99 DRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERG-MGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTP 177 (420)
T ss_pred CceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccC-CcccccCCHHHHHHHHHHHHhccCCcEEEEcCC
Confidence 57999999998 899999999999887 899999999998544444 578888999999999999999999999999975
Q ss_pred ccccccHHHHHHHHHHcCCcEEEE---------------------EccccCCCCCCCCCCC----HHHHHHHHhhC---C
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAV---------------------HGRTVDQRGMNTGLAS----WEHITAVRKAL---T 332 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~V---------------------hgRt~~~~g~~~g~~~----~~~i~~i~~~~---~ 332 (487)
+..+..++++.++++|+|+|++ |+|+. .++++|++. |+.++++++.+ +
T Consensus 178 --~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~--~gg~SG~a~~p~~l~~v~~~~~~~~~~~ 253 (420)
T PRK08318 178 --NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSS--HGGYCGPAVKPIALNMVAEIARDPETRG 253 (420)
T ss_pred --CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCC--cccccchhhhHHHHHHHHHHHhccccCC
Confidence 4556889999999999999983 33332 346899884 89999999987 8
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc-CcccccCCCCCcHHHHHHHHHHHHHcC
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY-NPALFTGQTRPAWELASEYLDLVAQYP 394 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~-~P~lf~~~~~~~~~~~~~~l~~~~~~~ 394 (487)
+|||++|||.|.+|+.+++ .+|||+||||||++. +|.++. ++.++..+++++++
T Consensus 254 ipIig~GGI~s~~da~e~i-~aGA~~Vqi~ta~~~~gp~ii~-------~I~~~L~~~l~~~g 308 (420)
T PRK08318 254 LPISGIGGIETWRDAAEFI-LLGAGTVQVCTAAMQYGFRIVE-------DMISGLSHYMDEKG 308 (420)
T ss_pred CCEEeecCcCCHHHHHHHH-HhCCChheeeeeeccCCchhHH-------HHHHHHHHHHHHcC
Confidence 9999999999999999999 699999999999998 688876 34455555666654
No 25
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=99.91 E-value=3.1e-23 Score=212.73 Aligned_cols=162 Identities=22% Similarity=0.321 Sum_probs=137.3
Q ss_pred HHHHHHHHHhhCCc-CcEEEeec--C-------CCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccc-
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINI--G-------CPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD- 283 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~--G-------cP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d- 283 (487)
.++|+++|++++++ ||+||||+ | +|..+.+++.||+.+.++.+++.+++++|+++++.++++++|++.+
T Consensus 140 i~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~ 219 (343)
T cd04734 140 IAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDE 219 (343)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhh
Confidence 36788999988877 99999999 4 5778889999999999999999999999999999889999998753
Q ss_pred -------cccHHHHHHHHHHcC-CcEEEEEccccCCC--------CCC-CCCCCHHHHHHHHhhCCCcEEEcCCCCCHHH
Q psy7343 284 -------VNKTVEYARMLERAG-CQLLAVHGRTVDQR--------GMN-TGLASWEHITAVRKALTIPVIANGNIQCLAD 346 (487)
Q Consensus 284 -------~~~~~e~a~~le~~G-~d~I~VhgRt~~~~--------g~~-~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~d 346 (487)
.++..++++.++++| +|.|.||+++..+. ..+ ....+|+.++++++.+++||++||+|.|+++
T Consensus 220 ~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~ 299 (343)
T cd04734 220 DTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAE 299 (343)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCCCEEeeCCCCCHHH
Confidence 246788999999998 89999975443221 011 1223578999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEeccccccCcccccCCC
Q psy7343 347 VEACLAQTGVAGVMTAEGNLYNPALFTGQT 376 (487)
Q Consensus 347 a~~~l~~~Gad~VmiGRa~l~~P~lf~~~~ 376 (487)
+++++++++||+||+||+++.|||++++..
T Consensus 300 ~~~~l~~~~~D~V~~gR~~ladP~l~~k~~ 329 (343)
T cd04734 300 AEQALAAGHADMVGMTRAHIADPHLVAKAR 329 (343)
T ss_pred HHHHHHcCCCCeeeecHHhHhCccHHHHHH
Confidence 999998888999999999999999997653
No 26
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.91 E-value=3.3e-23 Score=208.03 Aligned_cols=168 Identities=26% Similarity=0.442 Sum_probs=145.0
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI 280 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~ 280 (487)
.+.|+++||++++++++.++++.+++. +|+||||++||.... +..+..+++.+.++++++++.+++||++|++.
T Consensus 97 ~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~-----~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 171 (289)
T cd02810 97 PGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGG-----GRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP 171 (289)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccCHHHHHHHHHHHHHccCCCEEEEeCC
Confidence 478999999999999999999999887 999999999997422 23356789999999999999999999999998
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccC--------------CCCCCCCCC----CHHHHHHHHhhC--CCcEEEcCC
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVD--------------QRGMNTGLA----SWEHITAVRKAL--TIPVIANGN 340 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~--------------~~g~~~g~~----~~~~i~~i~~~~--~iPVi~nGg 340 (487)
+.+.++..++++.++++|+|+|++|+++.. ..++++|.+ .++.++++++.+ ++|||++||
T Consensus 172 ~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GG 251 (289)
T cd02810 172 YFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGG 251 (289)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECC
Confidence 777778899999999999999999987531 112344433 468899999998 899999999
Q ss_pred CCCHHHHHHHHHhcCCcEEEeccccccC-cccccCC
Q psy7343 341 IQCLADVEACLAQTGVAGVMTAEGNLYN-PALFTGQ 375 (487)
Q Consensus 341 I~s~~da~~~l~~~Gad~VmiGRa~l~~-P~lf~~~ 375 (487)
|.|++|+.+++ ..|||+||+||+++.| |++|.++
T Consensus 252 I~~~~da~~~l-~~GAd~V~vg~a~~~~GP~~~~~i 286 (289)
T cd02810 252 IDSGEDVLEML-MAGASAVQVATALMWDGPDVIRKI 286 (289)
T ss_pred CCCHHHHHHHH-HcCccHheEcHHHHhcCccHHHHH
Confidence 99999999999 5899999999999999 9999754
No 27
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.89 E-value=1.9e-22 Score=202.85 Aligned_cols=166 Identities=17% Similarity=0.273 Sum_probs=136.9
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCC----cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEE
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEP----HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCK 277 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~----~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vK 277 (487)
.+.|+++||.+. ++++.++++.+++ .+|+||||++||+. .+ +..+..|++.+.++++++++.+++||++|
T Consensus 90 ~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~---~~--~~~~~~~~~~~~~i~~~v~~~~~iPv~vK 163 (294)
T cd04741 90 SAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNV---PG--KPPPAYDFDATLEYLTAVKAAYSIPVGVK 163 (294)
T ss_pred cCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCC---CC--cccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 468999999998 9999998887766 37999999999973 12 22455789999999999999999999999
Q ss_pred eecccccccHHHHHHHHHHc--CCcEEEE----------Ec-ccc------CCCCCCCCCC----CHHHHHHHHhhC--C
Q psy7343 278 IRIYQDVNKTVEYARMLERA--GCQLLAV----------HG-RTV------DQRGMNTGLA----SWEHITAVRKAL--T 332 (487)
Q Consensus 278 iR~~~d~~~~~e~a~~le~~--G~d~I~V----------hg-Rt~------~~~g~~~g~~----~~~~i~~i~~~~--~ 332 (487)
+|.+.|..+..++++.+.+. |+|+|++ |. |+. ...++++|++ .+..++++++.+ +
T Consensus 164 l~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ 243 (294)
T cd04741 164 TPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSE 243 (294)
T ss_pred eCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCC
Confidence 99988777788899999888 9999995 43 222 1223455544 236678888888 5
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc-CcccccC
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY-NPALFTG 374 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~-~P~lf~~ 374 (487)
+|||++|||.|.+|+.+++ .+|||+||+||+++. +||+|++
T Consensus 244 ipIig~GGI~s~~da~e~l-~aGA~~Vqv~ta~~~~gp~~~~~ 285 (294)
T cd04741 244 IQIIGVGGVLDGRGAFRMR-LAGASAVQVGTALGKEGPKVFAR 285 (294)
T ss_pred CCEEEeCCCCCHHHHHHHH-HcCCCceeEchhhhhcCchHHHH
Confidence 9999999999999999999 599999999999995 9999984
No 28
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.88 E-value=4.4e-22 Score=203.11 Aligned_cols=167 Identities=20% Similarity=0.256 Sum_probs=141.4
Q ss_pred CCCCeeeeeccCC-------HHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc---
Q psy7343 202 EDRPLIIQFCGND-------SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--- 271 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d-------~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--- 271 (487)
.+.|+++||.+++ .+++++.++.+.+.+|+||||++||..- + .....+++.+.++++++++.++
T Consensus 127 ~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~---g---~~~~~~~~~~~~iv~av~~~~~~~~ 200 (327)
T cd04738 127 RGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTP---G---LRDLQGKEALRELLTAVKEERNKLG 200 (327)
T ss_pred CCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCC---c---cccccCHHHHHHHHHHHHHHHhhcc
Confidence 4689999999876 5788888888877789999999999741 1 2225799999999999999886
Q ss_pred --CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCC-----------CCCCCCCCC----HHHHHHHHhhC--C
Q psy7343 272 --VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQ-----------RGMNTGLAS----WEHITAVRKAL--T 332 (487)
Q Consensus 272 --iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~-----------~g~~~g~~~----~~~i~~i~~~~--~ 332 (487)
+||++|++.+.+.++..++++.++++|+|+|++|+|+... .++++|++. ++.++++++.+ +
T Consensus 201 ~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ 280 (327)
T cd04738 201 KKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGK 280 (327)
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCC
Confidence 9999999877666678999999999999999999986432 335677654 68899999998 8
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC-cccccCC
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN-PALFTGQ 375 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~-P~lf~~~ 375 (487)
+||+++|||.|.+|+.+++ .+|||+||+||+++.+ |++|.++
T Consensus 281 ipIi~~GGI~t~~da~e~l-~aGAd~V~vg~~~~~~gP~~~~~i 323 (327)
T cd04738 281 IPIIGVGGISSGEDAYEKI-RAGASLVQLYTGLVYEGPGLVKRI 323 (327)
T ss_pred CcEEEECCCCCHHHHHHHH-HcCCCHHhccHHHHhhCcHHHHHH
Confidence 9999999999999999999 5999999999999885 9998743
No 29
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.88 E-value=6.3e-22 Score=203.18 Aligned_cols=166 Identities=23% Similarity=0.274 Sum_probs=141.0
Q ss_pred CCCCeeeeeccC-------CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc---
Q psy7343 202 EDRPLIIQFCGN-------DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--- 271 (487)
Q Consensus 202 ~~~Pv~Vqi~g~-------d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--- 271 (487)
.+.|++++|.++ ..+++.+.++.+++.+|+||+|++||..- + .....+++.+.++++++++.++
T Consensus 136 ~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~---g---~~~~~~~~~~~eiv~aVr~~~~~~~ 209 (344)
T PRK05286 136 RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTP---G---LRDLQYGEALDELLAALKEAQAELH 209 (344)
T ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCC---C---cccccCHHHHHHHHHHHHHHHhccc
Confidence 468999999865 46789999888877799999999999631 1 1125789999999999999987
Q ss_pred --CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccC-----------CCCCCCCCC----CHHHHHHHHhhC--C
Q psy7343 272 --VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVD-----------QRGMNTGLA----SWEHITAVRKAL--T 332 (487)
Q Consensus 272 --iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~-----------~~g~~~g~~----~~~~i~~i~~~~--~ 332 (487)
+||++|++.+.+.++..++++.++++|+|+|++|+|+.. ..++++|++ .|+.++++++.+ +
T Consensus 210 ~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ 289 (344)
T PRK05286 210 GYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGR 289 (344)
T ss_pred cCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCC
Confidence 999999987665557899999999999999999998732 234577765 678999999998 8
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC-cccccC
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN-PALFTG 374 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~-P~lf~~ 374 (487)
+|||++|||.|.+|+.+++ ..|||+||+||+++.+ |++|.+
T Consensus 290 ipIig~GGI~s~eda~e~l-~aGAd~V~v~~~~~~~gP~~~~~ 331 (344)
T PRK05286 290 LPIIGVGGIDSAEDAYEKI-RAGASLVQIYSGLIYEGPGLVKE 331 (344)
T ss_pred CCEEEECCCCCHHHHHHHH-HcCCCHHHHHHHHHHhCchHHHH
Confidence 9999999999999999999 5999999999999875 999974
No 30
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.87 E-value=3.2e-21 Score=196.90 Aligned_cols=161 Identities=27% Similarity=0.358 Sum_probs=137.5
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecC---------CCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecc-
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIY- 281 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~G---------cP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~- 281 (487)
.++|.++|++++++ ||+||||+| ||..+.+.+.||+.+.++++++.++++++++.+ ++||.+|++..
T Consensus 140 i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~ 219 (327)
T cd02803 140 IEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADD 219 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhc
Confidence 36788899988877 999999998 577788999999999999999999999999998 67999998753
Q ss_pred -----cccccHHHHHHHHHHcCCcEEEEEccccCCCCC------CCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHH
Q psy7343 282 -----QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM------NTGLASWEHITAVRKALTIPVIANGNIQCLADVEAC 350 (487)
Q Consensus 282 -----~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~------~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~ 350 (487)
.+.++..++++.+++.|+|+|.|++++..+... .....+++.++++++.+++||+++|+|.|+++++++
T Consensus 220 ~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~ 299 (327)
T cd02803 220 FVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAVGGIRDPEVAEEI 299 (327)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHH
Confidence 234577889999999999999999887654321 112346788999999999999999999999999999
Q ss_pred HHhcCCcEEEeccccccCcccccCC
Q psy7343 351 LAQTGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 351 l~~~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
++..|||.|++||+++.||+++.+.
T Consensus 300 l~~g~aD~V~igR~~ladP~l~~k~ 324 (327)
T cd02803 300 LAEGKADLVALGRALLADPDLPNKA 324 (327)
T ss_pred HHCCCCCeeeecHHHHhCccHHHHH
Confidence 9777999999999999999998653
No 31
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=99.86 E-value=1.4e-21 Score=199.77 Aligned_cols=160 Identities=20% Similarity=0.256 Sum_probs=139.3
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecC---------CCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc---
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY--- 281 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~G---------cP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~--- 281 (487)
.+.|.++|++++++ ||+||||+| +|..|.+.+.||+.+.++.+++.+|+++|+++++.||.+|++..
T Consensus 141 i~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~ 220 (337)
T PRK13523 141 VLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYH 220 (337)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccC
Confidence 36788999988887 999999999 69999999999999999999999999999999999999999873
Q ss_pred ---cccccHHHHHHHHHHcCCcEEEEEccccCCC--CCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCC
Q psy7343 282 ---QDVNKTVEYARMLERAGCQLLAVHGRTVDQR--GMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGV 356 (487)
Q Consensus 282 ---~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~--g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Ga 356 (487)
.+.++..++++.+++.|+|.|.||+++.... ..+.+ .+++..+++++.+++||+++|+|.|++++++++++.+|
T Consensus 221 ~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~-~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~ 299 (337)
T PRK13523 221 PGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPG-YQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRA 299 (337)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCcc-ccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCC
Confidence 3456778999999999999999999874321 11223 36889999999999999999999999999999977789
Q ss_pred cEEEeccccccCcccccCC
Q psy7343 357 AGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 357 d~VmiGRa~l~~P~lf~~~ 375 (487)
|+|++||++++||+++.++
T Consensus 300 D~V~~gR~~iadP~~~~k~ 318 (337)
T PRK13523 300 DLIFIGRELLRNPYFPRIA 318 (337)
T ss_pred ChHHhhHHHHhCccHHHHH
Confidence 9999999999999998743
No 32
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.86 E-value=1.9e-20 Score=190.89 Aligned_cols=186 Identities=20% Similarity=0.253 Sum_probs=150.0
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
+.|+++|+.|.+++++.++++.+++. +|+||||++||.. . .+.+|.+. .+.+.++++++++.+++||++|++.
T Consensus 99 ~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~-~-~~~~g~~~---~~~~~eiv~~v~~~~~iPv~vKl~p- 172 (325)
T cd04739 99 SIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPT-D-PDISGAEV---EQRYLDILRAVKSAVTIPVAVKLSP- 172 (325)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCC-C-CCcccchH---HHHHHHHHHHHHhccCCCEEEEcCC-
Confidence 68999999999999999999999887 8999999999532 1 22234332 4678899999999999999999865
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccC-----------CCCCCCCCCC----HHHHHHHHhhCCCcEEEcCCCCCHHH
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVD-----------QRGMNTGLAS----WEHITAVRKALTIPVIANGNIQCLAD 346 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~-----------~~g~~~g~~~----~~~i~~i~~~~~iPVi~nGgI~s~~d 346 (487)
+..+..++++.++++|+|+|++|+|+.. ..++++|++. ++.++++++.+++|||++|||.|.+|
T Consensus 173 -~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~D 251 (325)
T cd04739 173 -FFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAED 251 (325)
T ss_pred -CccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHH
Confidence 3457899999999999999999998622 1233556553 47788888888999999999999999
Q ss_pred HHHHHHhcCCcEEEeccccccC-cccccCCCCCcHHHHHHHHHHHHHcC-hhHHHHHHH
Q psy7343 347 VEACLAQTGVAGVMTAEGNLYN-PALFTGQTRPAWELASEYLDLVAQYP-VRLQYARGH 403 (487)
Q Consensus 347 a~~~l~~~Gad~VmiGRa~l~~-P~lf~~~~~~~~~~~~~~l~~~~~~~-~~~~~~r~~ 403 (487)
+.+++ ..|||+||+||+++.+ |.++. ++.++..+++++.+ ..+.++++.
T Consensus 252 a~e~l-~aGA~~Vqv~ta~~~~gp~~~~-------~i~~~L~~~l~~~g~~~i~e~~G~ 302 (325)
T cd04739 252 VVKYL-LAGADVVMTTSALLRHGPDYIG-------TLLAGLEAWMEEHGYESVQQLRGS 302 (325)
T ss_pred HHHHH-HcCCCeeEEehhhhhcCchHHH-------HHHHHHHHHHHHcCCCCHHHHhcc
Confidence 99999 6999999999999995 98876 45666667777765 356666664
No 33
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=99.85 E-value=2.3e-20 Score=192.47 Aligned_cols=161 Identities=22% Similarity=0.270 Sum_probs=132.8
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecC---------CCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc--
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ-- 282 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~G---------cP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~-- 282 (487)
.++|.++|++++++ ||+||||.+ ||..+.+++.||+.+.++.+++.+++++|+++++.++.+++|++.
T Consensus 136 ~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D 215 (353)
T cd02930 136 IEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLD 215 (353)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccc
Confidence 36788899988776 999999876 688899999999999999999999999999999777777777753
Q ss_pred ------ccccHHHHHHHHHHcCCcEEEEEc-----cccCCCCCCCCCCC-HHHHHHHHhhCCCcEEEcCCCCCHHHHHHH
Q psy7343 283 ------DVNKTVEYARMLERAGCQLLAVHG-----RTVDQRGMNTGLAS-WEHITAVRKALTIPVIANGNIQCLADVEAC 350 (487)
Q Consensus 283 ------d~~~~~e~a~~le~~G~d~I~Vhg-----Rt~~~~g~~~g~~~-~~~i~~i~~~~~iPVi~nGgI~s~~da~~~ 350 (487)
+.++..++++.++++|+|.|.|+. ++.... .+.+... .+..+++++.+++||+++|+|.++++++++
T Consensus 216 ~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~-~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~ 294 (353)
T cd02930 216 LVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIA-TSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERL 294 (353)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccc-ccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHH
Confidence 334678899999999999999943 221111 1222223 356789999999999999999999999999
Q ss_pred HHhcCCcEEEeccccccCcccccCCC
Q psy7343 351 LAQTGVAGVMTAEGNLYNPALFTGQT 376 (487)
Q Consensus 351 l~~~Gad~VmiGRa~l~~P~lf~~~~ 376 (487)
+++.++|+|++||+++.|||++++..
T Consensus 295 i~~g~~D~V~~gR~~l~dP~~~~k~~ 320 (353)
T cd02930 295 LADGDADMVSMARPFLADPDFVAKAA 320 (353)
T ss_pred HHCCCCChhHhhHHHHHCccHHHHHH
Confidence 98788999999999999999998653
No 34
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.84 E-value=6.1e-20 Score=187.99 Aligned_cols=177 Identities=20% Similarity=0.253 Sum_probs=140.0
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
+.|+++|+++.+++++.++++.++++ +|+||||++||... .+..|. ...+.+.++++++++.+++||++|++.+
T Consensus 101 ~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~--~~~~g~---~~~~~~~eil~~v~~~~~iPV~vKl~p~ 175 (334)
T PRK07565 101 DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTD--PDISGA---EVEQRYLDILRAVKSAVSIPVAVKLSPY 175 (334)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCC--CCCccc---cHHHHHHHHHHHHHhccCCcEEEEeCCC
Confidence 58999999999999999999998887 89999999996531 122232 2346678999999999999999998653
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCC-----------CCCCCCCCC----HHHHHHHHhhCCCcEEEcCCCCCHHH
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQ-----------RGMNTGLAS----WEHITAVRKALTIPVIANGNIQCLAD 346 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~-----------~g~~~g~~~----~~~i~~i~~~~~iPVi~nGgI~s~~d 346 (487)
..+..++++.++++|+|+|++|+|+... ..+++|++. ++.+.++++.+++|||++|||.|.+|
T Consensus 176 --~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~D 253 (334)
T PRK07565 176 --FSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDAED 253 (334)
T ss_pred --chhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHH
Confidence 3467899999999999999999986321 123555543 47788888888999999999999999
Q ss_pred HHHHHHhcCCcEEEeccccccC-cccccCCCCCcHHHHHHHHHHHHHcC
Q psy7343 347 VEACLAQTGVAGVMTAEGNLYN-PALFTGQTRPAWELASEYLDLVAQYP 394 (487)
Q Consensus 347 a~~~l~~~Gad~VmiGRa~l~~-P~lf~~~~~~~~~~~~~~l~~~~~~~ 394 (487)
+.+++ .+|||+||+||+++.+ |.++. ++.++..+++.+.+
T Consensus 254 a~e~l-~aGA~~V~v~t~~~~~g~~~~~-------~i~~~L~~~l~~~g 294 (334)
T PRK07565 254 VIKML-LAGADVVMIASALLRHGPDYIG-------TILRGLEDWMERHG 294 (334)
T ss_pred HHHHH-HcCCCceeeehHHhhhCcHHHH-------HHHHHHHHHHHHcC
Confidence 99999 6999999999999996 87665 34445445555443
No 35
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.84 E-value=1.1e-20 Score=193.92 Aligned_cols=162 Identities=26% Similarity=0.357 Sum_probs=139.4
Q ss_pred CHHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEee--
Q psy7343 214 DSKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIR-- 279 (487)
Q Consensus 214 d~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR-- 279 (487)
..++|.++|++++++ ||+||||+|| |..+.+++.||+.++++++++.+++++|++++ ++||.+|+.
T Consensus 147 ~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~ 226 (338)
T cd04733 147 VIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSA 226 (338)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHH
Confidence 457899999999887 9999999997 88899999999999999999999999999998 478998886
Q ss_pred ----cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCC---C------CCCCHHHHHHHHhhCCCcEEEcCCCCCHHH
Q psy7343 280 ----IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN---T------GLASWEHITAVRKALTIPVIANGNIQCLAD 346 (487)
Q Consensus 280 ----~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~---~------g~~~~~~i~~i~~~~~iPVi~nGgI~s~~d 346 (487)
.+++.++..++++.++++|+|.|.||+++..+.... . ....++..+++++.+++||+++|+|.++++
T Consensus 227 ~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~ 306 (338)
T cd04733 227 DFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGFRTRAA 306 (338)
T ss_pred HcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCCCCHHH
Confidence 345667888999999999999999999875443211 0 011357888999999999999999999999
Q ss_pred HHHHHHhcCCcEEEeccccccCcccccCC
Q psy7343 347 VEACLAQTGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 347 a~~~l~~~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
+++++++.+||.|++||++++||+++++.
T Consensus 307 a~~~l~~g~aD~V~lgR~~iadP~~~~k~ 335 (338)
T cd04733 307 MEQALASGAVDGIGLARPLALEPDLPNKL 335 (338)
T ss_pred HHHHHHcCCCCeeeeChHhhhCccHHHHH
Confidence 99999878899999999999999998754
No 36
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=99.84 E-value=1.6e-19 Score=187.09 Aligned_cols=161 Identities=16% Similarity=0.158 Sum_probs=132.2
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccc-
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD- 283 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d- 283 (487)
.++|.++|++++++ ||+||||+|| |..+.+.+.||+.++++.+++.|++++|+++++.++.+++|++.+
T Consensus 149 i~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~ 228 (370)
T cd02929 149 RRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDE 228 (370)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHH
Confidence 36788999988887 9999999999 888999999999999999999999999999998777888887532
Q ss_pred ---------cccHHHHHHHHHHcCCcEEEEEccccCCC----CCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHH
Q psy7343 284 ---------VNKTVEYARMLERAGCQLLAVHGRTVDQR----GMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEAC 350 (487)
Q Consensus 284 ---------~~~~~e~a~~le~~G~d~I~VhgRt~~~~----g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~ 350 (487)
.++..++++.+++. +|.+.+++...... ..+.....++.++++++.+++||+++|+|.++++++++
T Consensus 229 ~~~~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~ 307 (370)
T cd02929 229 LIGPGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGRFTSPDKMVEV 307 (370)
T ss_pred hcCCCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCCCCCHHHHHHH
Confidence 23456778888775 79998854321110 01122235788899999999999999999999999999
Q ss_pred HHhcCCcEEEeccccccCcccccCCC
Q psy7343 351 LAQTGVAGVMTAEGNLYNPALFTGQT 376 (487)
Q Consensus 351 l~~~Gad~VmiGRa~l~~P~lf~~~~ 376 (487)
+++.+||+|++||++++||+++.+..
T Consensus 308 l~~g~~D~V~~gR~~ladP~l~~k~~ 333 (370)
T cd02929 308 VKSGILDLIGAARPSIADPFLPKKIR 333 (370)
T ss_pred HHcCCCCeeeechHhhhCchHHHHHH
Confidence 98788999999999999999998654
No 37
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.82 E-value=3.4e-19 Score=200.88 Aligned_cols=157 Identities=21% Similarity=0.298 Sum_probs=132.0
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecC---------CCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecc-
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIY- 281 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~G---------cP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~- 281 (487)
.++|.++|+++.++ +|+||||+| ||..+.+++.||+.+.++.+++.||+++|++++ ++||.+|++..
T Consensus 550 i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~ 629 (765)
T PRK08255 550 RDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHD 629 (765)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEcccc
Confidence 36788899988777 999999999 899999999999999999999999999999987 47999999862
Q ss_pred -----cccccHHHHHHHHHHcCCcEEEEE-ccccCCC-CCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhc
Q psy7343 282 -----QDVNKTVEYARMLERAGCQLLAVH-GRTVDQR-GMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQT 354 (487)
Q Consensus 282 -----~d~~~~~e~a~~le~~G~d~I~Vh-gRt~~~~-g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~ 354 (487)
++.++..++++.+++.|+|.|.|| |++..+. ..+......+..+++|+.+++||+++|+|++++++++++++.
T Consensus 630 ~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g 709 (765)
T PRK08255 630 WVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAG 709 (765)
T ss_pred ccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcC
Confidence 234567899999999999999998 4443221 111111234677889999999999999999999999999888
Q ss_pred CCcEEEeccccccCccc
Q psy7343 355 GVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 355 Gad~VmiGRa~l~~P~l 371 (487)
+||+|++||++++||++
T Consensus 710 ~~D~v~~gR~~l~dP~~ 726 (765)
T PRK08255 710 RADLCALARPHLADPAW 726 (765)
T ss_pred CcceeeEcHHHHhCccH
Confidence 99999999999999955
No 38
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=99.82 E-value=6.8e-20 Score=190.62 Aligned_cols=162 Identities=19% Similarity=0.311 Sum_probs=136.1
Q ss_pred HHHHHHHHHhhCCc-CcEEEeec---CC-------CcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecc
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINI---GC-------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIY 281 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~---Gc-------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~ 281 (487)
.++|.++|++++++ ||+||||+ || |..+.+.+.||+.++++.+++.+|+++|++++ ++||.+|++..
T Consensus 149 i~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~ 228 (382)
T cd02931 149 VGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVK 228 (382)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEech
Confidence 36789999999887 99999998 66 66889999999999999999999999999998 57899998841
Q ss_pred --------------------cccccHHHHHHHHHHcCCcEEEEEccccCCCC-----CCCCCC-CHHHHHHHHhhCCCcE
Q psy7343 282 --------------------QDVNKTVEYARMLERAGCQLLAVHGRTVDQRG-----MNTGLA-SWEHITAVRKALTIPV 335 (487)
Q Consensus 282 --------------------~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g-----~~~g~~-~~~~i~~i~~~~~iPV 335 (487)
.+.++..++++.++++|+|.|.||+++..+.. .+.+.. .++.++++++.+++||
T Consensus 229 ~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv 308 (382)
T cd02931 229 SYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVPV 308 (382)
T ss_pred hhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCCE
Confidence 12356678999999999999999988754311 111112 2577889999999999
Q ss_pred EEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCC
Q psy7343 336 IANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT 376 (487)
Q Consensus 336 i~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~ 376 (487)
+++|+|++++++++++++.+||+|++||+++.||+++++..
T Consensus 309 i~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~ 349 (382)
T cd02931 309 IMAGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKIR 349 (382)
T ss_pred EEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHHH
Confidence 99999999999999998788999999999999999998653
No 39
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=99.82 E-value=7.4e-20 Score=187.31 Aligned_cols=156 Identities=21% Similarity=0.259 Sum_probs=135.4
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhccC-cEEEEeeccc-
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV-PVSCKIRIYQ- 282 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~i-PV~vKiR~~~- 282 (487)
.+.|.++|++++++ ||+||||+|| |..+.+.+.||+.+.++.+++.+++++||++++. +|.+|++...
T Consensus 151 i~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~ 230 (338)
T cd02933 151 VADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGT 230 (338)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECcccc
Confidence 36788999999887 9999999999 8889999999999999999999999999999865 7888886531
Q ss_pred --------ccccHHHHHHHHHHcCCcEEEE-EccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHh
Q psy7343 283 --------DVNKTVEYARMLERAGCQLLAV-HGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQ 353 (487)
Q Consensus 283 --------d~~~~~e~a~~le~~G~d~I~V-hgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~ 353 (487)
+.++..++++.+++.|+|.|.| ||+...+. ...+++.++++++.+++||+++|+|+ ++++++++++
T Consensus 231 ~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~----~~~~~~~~~~ik~~~~ipvi~~G~i~-~~~a~~~l~~ 305 (338)
T cd02933 231 FNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP----EDQPPDFLDFLRKAFKGPLIAAGGYD-AESAEAALAD 305 (338)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc----cccchHHHHHHHHHcCCCEEEECCCC-HHHHHHHHHc
Confidence 2346678999999999999999 56544322 44678999999999999999999997 9999999987
Q ss_pred cCCcEEEeccccccCcccccCC
Q psy7343 354 TGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 354 ~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
.+||+|++||++++||+++++.
T Consensus 306 g~~D~V~~gR~~ladP~~~~k~ 327 (338)
T cd02933 306 GKADLVAFGRPFIANPDLVERL 327 (338)
T ss_pred CCCCEEEeCHhhhhCcCHHHHH
Confidence 8899999999999999999865
No 40
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.82 E-value=3.6e-20 Score=190.93 Aligned_cols=161 Identities=18% Similarity=0.271 Sum_probs=134.8
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecC---------CCcceeeccCccccccCChHHHHHHHHHHhhhcc----CcEEEEeec
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ----VPVSCKIRI 280 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~G---------cP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~----iPV~vKiR~ 280 (487)
.++|.++|++++++ ||+||||++ ||..+.++++||+.+.++.+++.||+++|+++++ .++.+.+|+
T Consensus 143 i~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~ 222 (353)
T cd04735 143 IDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRF 222 (353)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEE
Confidence 36788999999887 999999997 5989999999999999999999999999999987 677888887
Q ss_pred ccc--------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHH
Q psy7343 281 YQD--------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEAC 350 (487)
Q Consensus 281 ~~d--------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~ 350 (487)
+.+ .++..++++.+++.|+|.|.||+.+............++.++.+++.+ ++||+++|+|+|+++++++
T Consensus 223 s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~ 302 (353)
T cd04735 223 SPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEA 302 (353)
T ss_pred CcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHH
Confidence 643 246788999999999999999876543322122233567777787776 8999999999999999999
Q ss_pred HHhcCCcEEEeccccccCcccccCCC
Q psy7343 351 LAQTGVAGVMTAEGNLYNPALFTGQT 376 (487)
Q Consensus 351 l~~~Gad~VmiGRa~l~~P~lf~~~~ 376 (487)
++. |||+|++||++++||+++.+..
T Consensus 303 l~~-gaD~V~~gR~liadPdl~~k~~ 327 (353)
T cd04735 303 LET-GADLVAIGRGLLVDPDWVEKIK 327 (353)
T ss_pred HHc-CCChHHHhHHHHhCccHHHHHH
Confidence 965 9999999999999999987653
No 41
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.81 E-value=1.3e-19 Score=185.68 Aligned_cols=160 Identities=24% Similarity=0.250 Sum_probs=134.2
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeec--
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRI-- 280 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~-- 280 (487)
.++|+++|+++.++ ||+||||+|| |..+.+++.||+.+.++++++.+++++|++.+ ++||.+|++.
T Consensus 153 i~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~ 232 (336)
T cd02932 153 VDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATD 232 (336)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccc
Confidence 36788889888777 9999999998 77889999999999999999999999999999 7899999874
Q ss_pred ----ccccccHHHHHHHHHHcCCcEEEEEcc--ccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhc
Q psy7343 281 ----YQDVNKTVEYARMLERAGCQLLAVHGR--TVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQT 354 (487)
Q Consensus 281 ----~~d~~~~~e~a~~le~~G~d~I~VhgR--t~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~ 354 (487)
+++.++..++++.+++.|+|.|.||+. +..+........+++..+++++.+++||+++|+|.|++++++++++.
T Consensus 233 ~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g 312 (336)
T cd02932 233 WVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIAVGLITDPEQAEAILESG 312 (336)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcC
Confidence 345567889999999999999999743 22221111112245888999999999999999999999999999766
Q ss_pred CCcEEEeccccccCcccccC
Q psy7343 355 GVAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 355 Gad~VmiGRa~l~~P~lf~~ 374 (487)
.||.|++||+++.||++..+
T Consensus 313 ~aD~V~~gR~~i~dP~~~~k 332 (336)
T cd02932 313 RADLVALGRELLRNPYWPLH 332 (336)
T ss_pred CCCeehhhHHHHhCccHHHH
Confidence 79999999999999999764
No 42
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.80 E-value=1.4e-18 Score=179.14 Aligned_cols=189 Identities=22% Similarity=0.344 Sum_probs=150.3
Q ss_pred CCCeeeeecc-CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec
Q psy7343 203 DRPLIIQFCG-NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI 280 (487)
Q Consensus 203 ~~Pv~Vqi~g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~ 280 (487)
++|++++|.+ .+++++.++++.+++. .|+||||++||+.-..++ .|.++..+++.+.++++++++.+++||++|+.
T Consensus 113 ~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~-~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLs- 190 (385)
T PLN02495 113 DRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERK-MGAAVGQDCDLLEEVCGWINAKATVPVWAKMT- 190 (385)
T ss_pred CCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCc-cchhhccCHHHHHHHHHHHHHhhcCceEEEeC-
Confidence 6899999976 8999999999999987 899999999997533233 36667789999999999999999999999984
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccC-------------------CCCCCCCCCCH----HHHHHHHhhC------
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVD-------------------QRGMNTGLASW----EHITAVRKAL------ 331 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~-------------------~~g~~~g~~~~----~~i~~i~~~~------ 331 (487)
++..+..++++.+++.|+|+|++..++.. ..|+++|++-. ..+.++++.+
T Consensus 191 -Pn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~ 269 (385)
T PLN02495 191 -PNITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPE 269 (385)
T ss_pred -CChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccC
Confidence 45667899999999999999988554321 22445555422 3344455554
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC-cccccCCCCCcHHHHHHHHHHHHHcC-hhHHHHHH
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN-PALFTGQTRPAWELASEYLDLVAQYP-VRLQYARG 402 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~-P~lf~~~~~~~~~~~~~~l~~~~~~~-~~~~~~r~ 402 (487)
++||++.|||.|.+|+.+++ ..||+.||++++++.+ |.++. ++.+++.+++++.+ ..+..+++
T Consensus 270 ~ipIiGvGGI~s~~Da~e~i-~aGAs~VQv~Ta~~~~Gp~vi~-------~i~~~L~~~m~~~G~~si~e~~G 334 (385)
T PLN02495 270 DRSLSGIGGVETGGDAAEFI-LLGADTVQVCTGVMMHGYPLVK-------NLCAELQDFMKKHNFSSIEDFRG 334 (385)
T ss_pred CCcEEEECCCCCHHHHHHHH-HhCCCceeEeeeeeecCcHHHH-------HHHHHHHHHHHHcCCCCHHHHhC
Confidence 49999999999999999999 7999999999999999 99887 45667677777765 34555554
No 43
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.80 E-value=1.4e-18 Score=175.38 Aligned_cols=188 Identities=20% Similarity=0.212 Sum_probs=144.1
Q ss_pred CCccccccccCCC------chHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccC-CHHHHHH
Q psy7343 148 SPRFILAPMVDAS------ELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGN-DSKNLTE 220 (487)
Q Consensus 148 ~~~~~lApma~~t------d~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~-d~~~~~~ 220 (487)
+.|++++||++.+ +..++..+.++|+..+.+.+... .. +++.... +.|+.+|+.+. +++...+
T Consensus 64 ~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~-----~~---~~i~~~~--~~~~~~ql~~~~~~~~~~~ 133 (299)
T cd02809 64 AMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTT-----SL---EEVAAAA--PGPRWFQLYVPRDREITED 133 (299)
T ss_pred CCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcC-----CH---HHHHHhc--CCCeEEEEeecCCHHHHHH
Confidence 5799999997664 45678899999987766554421 11 1222121 27999999864 8888888
Q ss_pred HHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCC
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC 299 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~ 299 (487)
+++.+++. +++|++|++||.. ..+ ..+ ++++++++.+++||++|+. ...+.++.++++|+
T Consensus 134 ~i~~~~~~g~~~i~l~~~~p~~---~~~------~~~----~~i~~l~~~~~~pvivK~v------~s~~~a~~a~~~G~ 194 (299)
T cd02809 134 LLRRAEAAGYKALVLTVDTPVL---GRR------LTW----DDLAWLRSQWKGPLILKGI------LTPEDALRAVDAGA 194 (299)
T ss_pred HHHHHHHcCCCEEEEecCCCCC---CCC------CCH----HHHHHHHHhcCCCEEEeec------CCHHHHHHHHHCCC
Confidence 88887666 8999999999863 111 234 4556677778899999963 33566889999999
Q ss_pred cEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 300 QLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 300 d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
|+|.+++++..+. +.+.+.|+.+.++++.+ ++|||++|||++..|+.+++ ..|||+||+||+++.
T Consensus 195 d~I~v~~~gG~~~--~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal-~lGAd~V~ig~~~l~ 261 (299)
T cd02809 195 DGIVVSNHGGRQL--DGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKAL-ALGADAVLIGRPFLY 261 (299)
T ss_pred CEEEEcCCCCCCC--CCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHH-HcCCCEEEEcHHHHH
Confidence 9999988765543 56788999999999887 59999999999999999999 699999999995443
No 44
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.80 E-value=1.9e-18 Score=172.56 Aligned_cols=186 Identities=25% Similarity=0.357 Sum_probs=151.3
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCc--CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR 279 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~--~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR 279 (487)
.+.+++....+...+.+.+.+..+++. +|+|++|.+||+. .+ |.++..+++.+.++++++++..++||.+|+-
T Consensus 95 ~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt---~g--~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~ 169 (310)
T COG0167 95 IGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNT---PG--GRALGQDPELLEKLLEAVKAATKVPVFVKLA 169 (310)
T ss_pred cCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCC---CC--hhhhccCHHHHHHHHHHHHhcccCceEEEeC
Confidence 345666667777888888888888776 5999999999972 22 5677779999999999999999999999983
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEcccc---------------CCCCCCCCCCCH----HHHHHHHhhCC--CcEEEc
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTV---------------DQRGMNTGLASW----EHITAVRKALT--IPVIAN 338 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~---------------~~~g~~~g~~~~----~~i~~i~~~~~--iPVi~n 338 (487)
++..+..++++.++++|+|+|++..-+. .+.|+++|++-. ..++++++.++ +|||+.
T Consensus 170 --P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGv 247 (310)
T COG0167 170 --PNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGV 247 (310)
T ss_pred --CCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEe
Confidence 3677899999999999999998855221 345678887743 77888888875 999999
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEeccccccC-cccccCCCCCcHHHHHHHHHHHHHcC-hhHHHHHH
Q psy7343 339 GNIQCLADVEACLAQTGVAGVMTAEGNLYN-PALFTGQTRPAWELASEYLDLVAQYP-VRLQYARG 402 (487)
Q Consensus 339 GgI~s~~da~~~l~~~Gad~VmiGRa~l~~-P~lf~~~~~~~~~~~~~~l~~~~~~~-~~~~~~r~ 402 (487)
|||.|.+|+.+++ ..||+.|++|++++.+ |++|. ++.+...+++++++ ..++.+++
T Consensus 248 GGI~s~~DA~E~i-~aGA~~vQv~Tal~~~Gp~i~~-------~I~~~l~~~l~~~g~~si~d~iG 305 (310)
T COG0167 248 GGIETGEDALEFI-LAGASAVQVGTALIYKGPGIVK-------EIIKGLARWLEEKGFESIQDIIG 305 (310)
T ss_pred cCcCcHHHHHHHH-HcCCchheeeeeeeeeCchHHH-------HHHHHHHHHHHHcCCCCHHHHhc
Confidence 9999999999999 7999999999999999 99998 45666667777765 33555554
No 45
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=99.78 E-value=1.6e-17 Score=170.55 Aligned_cols=160 Identities=27% Similarity=0.361 Sum_probs=129.2
Q ss_pred HHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhccC--cEEEEeecc--
Q psy7343 216 KNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV--PVSCKIRIY-- 281 (487)
Q Consensus 216 ~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~i--PV~vKiR~~-- 281 (487)
++|.++|++++++ ||+||||.++ |..|.+.+.||+++.++.++..|++++|+++++. ||.+++...
T Consensus 149 ~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~ 228 (363)
T COG1902 149 EDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDF 228 (363)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECcccc
Confidence 6789999999888 9999999886 8889999999999999999999999999999965 555555431
Q ss_pred -----cccccHHHHHHHHHHcC-CcEEEEEccccC--CCCCCCC-CCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHH
Q psy7343 282 -----QDVNKTVEYARMLERAG-CQLLAVHGRTVD--QRGMNTG-LASWEHITAVRKALTIPVIANGNIQCLADVEACLA 352 (487)
Q Consensus 282 -----~d~~~~~e~a~~le~~G-~d~I~VhgRt~~--~~g~~~g-~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~ 352 (487)
++.++..++++.+++.| +|.|.+.+-... +...+.+ .........++..+++|||++|+|++++.++++++
T Consensus 229 ~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~ 308 (363)
T COG1902 229 FDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILA 308 (363)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH
Confidence 12347789999999999 799999654332 1111111 12235667788888999999999999999999996
Q ss_pred hcCCcEEEeccccccCcccccCC
Q psy7343 353 QTGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 353 ~~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
+.+||.|.+||++++||++..+.
T Consensus 309 ~g~aDlVa~gR~~ladP~~~~k~ 331 (363)
T COG1902 309 SGRADLVAMGRPFLADPDLVLKA 331 (363)
T ss_pred cCCCCEEEechhhhcCccHHHHH
Confidence 66699999999999999997654
No 46
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.78 E-value=4.9e-18 Score=174.28 Aligned_cols=231 Identities=16% Similarity=0.159 Sum_probs=149.1
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCC-CeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPM 156 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Ga-dl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApm 156 (487)
+.++++|||+|+||.+||.+|+++|+ ++ |+++++.+... ...++.+|+... .+.+.. +
T Consensus 44 ~~PivlAPMagVtd~~fr~~~~~~Galgv-----vsaegl~~~~~----------~~~~~~~QI~g~---~~~~~~-a-- 102 (369)
T TIGR01304 44 ELPFIAHPMDALVSPEFAIELGELGGLGV-----LNLEGLWGRHE----------DPDPAIAKIAEA---YEEGDQ-A-- 102 (369)
T ss_pred CCceeecCCCcccCHHHHHHHHHcCCccc-----ccchHHHhcCC----------CHHHHHHHHhhc---CCChHH-H--
Confidence 45899999999999999999999999 76 88888876432 334566896321 112111 1
Q ss_pred cCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeec
Q psy7343 157 VDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINI 236 (487)
Q Consensus 157 a~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~ 236 (487)
....+..+.+++. .++++..++++.... ..|++|++- ++.+..+.++.++++
T Consensus 103 ------~aa~~~~e~~~~~------------~~p~l~~~ii~~vr~-a~VtvkiRl-~~~~~~e~a~~l~eA-------- 154 (369)
T TIGR01304 103 ------AATRLLQELHAAP------------LKPELLGERIAEVRD-SGVITAVRV-SPQNAREIAPIVVKA-------- 154 (369)
T ss_pred ------HHHHHHHHcCCCc------------cChHHHHHHHHHHHh-cceEEEEec-CCcCHHHHHHHHHHC--------
Confidence 1122334444332 356666666642221 138999986 345677888877776
Q ss_pred CCCcceeeccCccccc----cCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCC
Q psy7343 237 GCPQMVAKRGHYGAYL----QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR 312 (487)
Q Consensus 237 GcP~~i~~~gr~G~~l----~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~ 312 (487)
|+ ..++.|+++.++. ..+|..+.++++ ..++||++. ++.+..++.+.+ ++|+|+|++ ||+....
T Consensus 155 Ga-d~I~ihgrt~~q~~~sg~~~p~~l~~~i~----~~~IPVI~G-----~V~t~e~A~~~~-~aGaDgV~~-G~gg~~~ 222 (369)
T TIGR01304 155 GA-DLLVIQGTLVSAEHVSTSGEPLNLKEFIG----ELDVPVIAG-----GVNDYTTALHLM-RTGAAGVIV-GPGGANT 222 (369)
T ss_pred CC-CEEEEeccchhhhccCCCCCHHHHHHHHH----HCCCCEEEe-----CCCCHHHHHHHH-HcCCCEEEE-CCCCCcc
Confidence 33 3344555443221 246776666554 458999983 566666665555 599999997 7644321
Q ss_pred C-CCC--CCCCHHHHHHHHh-------hC---CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 313 G-MNT--GLASWEHITAVRK-------AL---TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 313 g-~~~--g~~~~~~i~~i~~-------~~---~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
. ... +.+....+.++.+ .. .+|||+.|||.+..|+.+.+ ..|||+||+|++++.--+
T Consensus 223 ~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAl-AlGAdaV~iGt~~a~a~E 292 (369)
T TIGR01304 223 TRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAI-ACGADAVVLGSPLARAAE 292 (369)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHH-HcCCCEeeeHHHHHhhhc
Confidence 1 111 2333445554432 22 39999999999999999999 789999999999877543
No 47
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.78 E-value=1.3e-17 Score=171.25 Aligned_cols=178 Identities=19% Similarity=0.268 Sum_probs=144.6
Q ss_pred CCccccccccCCCchHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeecc--CCHHHHHHHHHh
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCG--NDSKNLTEAAKL 224 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g--~d~~~~~~aa~~ 224 (487)
+.|+++|||++++|.+||.++.++|+ ++ +++++|.+..+. ..|+.+||++ ++++. .+++++
T Consensus 44 ~~PivlAPMagVtd~~fr~~~~~~Galgv-----vsaegl~~~~~~----------~~~~~~QI~g~~~~~~~-a~aa~~ 107 (369)
T TIGR01304 44 ELPFIAHPMDALVSPEFAIELGELGGLGV-----LNLEGLWGRHED----------PDPAIAKIAEAYEEGDQ-AAATRL 107 (369)
T ss_pred CCceeecCCCcccCHHHHHHHHHcCCccc-----ccchHHHhcCCC----------HHHHHHHHhhcCCChHH-HHHHHH
Confidence 56999999999999999999999997 65 777776554322 2355689997 56656 788888
Q ss_pred hCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEE
Q psy7343 225 AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304 (487)
Q Consensus 225 ~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V 304 (487)
+++. +. .. .+++++.++++++++.. |++|+|++ ..+..++++.++++|+|.|.+
T Consensus 108 ~~e~--------~~-~~------------~~p~l~~~ii~~vr~a~---VtvkiRl~--~~~~~e~a~~l~eAGad~I~i 161 (369)
T TIGR01304 108 LQEL--------HA-AP------------LKPELLGERIAEVRDSG---VITAVRVS--PQNAREIAPIVVKAGADLLVI 161 (369)
T ss_pred HHHc--------CC-Cc------------cChHHHHHHHHHHHhcc---eEEEEecC--CcCHHHHHHHHHHCCCCEEEE
Confidence 8775 11 11 37999999999999863 99999995 347899999999999999999
Q ss_pred EccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 305 HGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 305 hgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
|||++.|.. .++..+|..+.++++..++|||+ |+|.|.+++.+++ ++|||+||+|++.-....
T Consensus 162 hgrt~~q~~-~sg~~~p~~l~~~i~~~~IPVI~-G~V~t~e~A~~~~-~aGaDgV~~G~gg~~~~~ 224 (369)
T TIGR01304 162 QGTLVSAEH-VSTSGEPLNLKEFIGELDVPVIA-GGVNDYTTALHLM-RTGAAGVIVGPGGANTTR 224 (369)
T ss_pred eccchhhhc-cCCCCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHH-HcCCCEEEECCCCCcccc
Confidence 999988762 25567898899999999999998 8999999999999 599999999998755433
No 48
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=99.78 E-value=1.2e-18 Score=179.14 Aligned_cols=159 Identities=18% Similarity=0.216 Sum_probs=132.2
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecc-
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIY- 281 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~- 281 (487)
.++|.++|++++++ ||+||||++| |..+.+++.||+.+.++.+++.|++++|++++ ++||.+|++..
T Consensus 143 i~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~ 222 (361)
T cd04747 143 IAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWK 222 (361)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECccc
Confidence 36788999999887 9999999999 99999999999999999999999999999998 47899988741
Q ss_pred ---------cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCC-----------
Q psy7343 282 ---------QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNI----------- 341 (487)
Q Consensus 282 ---------~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI----------- 341 (487)
.+.++..++++.+++.|+|.|.+..+... .+.+.+ .+++..+++++.+++||+++|+|
T Consensus 223 ~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~-~~~~~~-~~~~~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~ 300 (361)
T cd04747 223 QQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFW-EPEFEG-SELNLAGWTKKLTGLPTITVGSVGLDGDFIGAFA 300 (361)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCcc-CCCcCc-cchhHHHHHHHHcCCCEEEECCcccccccccccc
Confidence 12234567788899999999888544211 112333 35777888999999999999999
Q ss_pred -------CCHHHHHHHHHhcCCcEEEeccccccCcccccCC
Q psy7343 342 -------QCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 342 -------~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
+|+++++++++..+||+|++||++++|||++++.
T Consensus 301 ~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~ 341 (361)
T cd04747 301 GDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVAKV 341 (361)
T ss_pred cccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHHH
Confidence 6999999999778899999999999999998765
No 49
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.77 E-value=3.2e-18 Score=173.34 Aligned_cols=188 Identities=17% Similarity=0.258 Sum_probs=143.9
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCc--CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI 280 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~--~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~ 280 (487)
+.|+++++.|.+++++.+.++.++++ .|+||||++||+. .+ +..+..|++.+.++++++++.+++||++|+..
T Consensus 92 ~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~---~~--~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp 166 (310)
T PRK02506 92 NKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNV---PG--KPQIAYDFETTEQILEEVFTYFTKPLGVKLPP 166 (310)
T ss_pred CCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCC---CC--ccccccCHHHHHHHHHHHHHhcCCccEEecCC
Confidence 58999999999999999999999875 7999999999973 12 33345689999999999999999999999976
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEcc-------------c----cCCCCCCCCCCCH----HHHHHHHhhC--CCcEEE
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGR-------------T----VDQRGMNTGLASW----EHITAVRKAL--TIPVIA 337 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgR-------------t----~~~~g~~~g~~~~----~~i~~i~~~~--~iPVi~ 337 (487)
..+.....+++..+.+.|+++|....+ . ....|+++|++.. ..+.++++.+ ++|||+
T Consensus 167 ~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig 246 (310)
T PRK02506 167 YFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIG 246 (310)
T ss_pred CCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEE
Confidence 544434444444445667776543221 1 1123566776643 6677777777 799999
Q ss_pred cCCCCCHHHHHHHHHhcCCcEEEecccccc-CcccccCCCCCcHHHHHHHHHHHHHcC-hhHHHHHHH
Q psy7343 338 NGNIQCLADVEACLAQTGVAGVMTAEGNLY-NPALFTGQTRPAWELASEYLDLVAQYP-VRLQYARGH 403 (487)
Q Consensus 338 nGgI~s~~da~~~l~~~Gad~VmiGRa~l~-~P~lf~~~~~~~~~~~~~~l~~~~~~~-~~~~~~r~~ 403 (487)
+|||.|.+|+.+++ ..||+.||++++++. +|.+|. ++.++..+++++.+ ..+.++++.
T Consensus 247 ~GGI~s~~da~e~i-~aGA~~Vqv~ta~~~~gp~~~~-------~i~~~L~~~l~~~g~~si~e~~G~ 306 (310)
T PRK02506 247 TGGVKTGRDAFEHI-LCGASMVQVGTALHKEGPAVFE-------RLTKELKAIMAEKGYQSLEDFRGK 306 (310)
T ss_pred ECCCCCHHHHHHHH-HcCCCHHhhhHHHHHhChHHHH-------HHHHHHHHHHHHhCCCCHHHHhCh
Confidence 99999999999999 899999999999998 699987 45666667777765 456677764
No 50
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.77 E-value=3.7e-19 Score=172.94 Aligned_cols=193 Identities=15% Similarity=0.164 Sum_probs=131.5
Q ss_pred ceEEecCCCCCCHHHHH-HHHHcCCCeE--------------------EccceeccccccCcHHHHHHhhhCCCCCceee
Q psy7343 80 RFILAPMVDASELPWRL-LSRRYGSHLC--------------------YTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138 (487)
Q Consensus 80 ~~~LAPMag~td~pFR~-l~~~~Gadl~--------------------~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~v 138 (487)
+++||||+|+||.+||. +|..+|++++ ++||++.+.+ +--+.....+ ...+.|+++
T Consensus 1 ~~~lApMag~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~-~~~~~~~~~~--~~~~~p~~v 77 (233)
T cd02911 1 PVALASMAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPL-EFIEGEIKAL--KDSNVLVGV 77 (233)
T ss_pred CceeeecCCCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCccccccchH-HHHHHHHHHh--hccCCeEEE
Confidence 57999999999999999 6788887766 6777766622 2112222222 223569999
Q ss_pred eeccccCCCCCccccccccC-CCchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHhc-CCCCCCeeeeec-
Q psy7343 139 QRTIFPRLGSPRFILAPMVD-ASELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILMS-TPEDRPLIIQFC- 211 (487)
Q Consensus 139 Ql~~~~~~g~~~~~lApma~-~td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~~-~~~~~Pv~Vqi~- 211 (487)
|+.+ +.+..++..+. +.+. ...+..|+| ||.+.+. |++|+++++++.++++. ...+.||+||++
T Consensus 78 qi~g-----~~~~~~~~aa~~~~~~-~~~ielN~g---CP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~ 148 (233)
T cd02911 78 NVRS-----SSLEPLLNAAALVAKN-AAILEINAH---CRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRA 148 (233)
T ss_pred EecC-----CCHHHHHHHHHHHhhc-CCEEEEECC---CCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcC
Confidence 9753 22222221111 1121 245667888 8877543 78899999998888862 224789999999
Q ss_pred cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHH
Q psy7343 212 GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 212 g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~ 290 (487)
+.+ ++..++++.++++ .|+|.+..+-+ | ...||+.+.++ + +++||++|+ ++.+..++
T Consensus 149 g~~-~~~~~la~~l~~aG~d~ihv~~~~~---------g--~~ad~~~I~~i----~--~~ipVIgnG----gI~s~eda 206 (233)
T cd02911 149 GVD-VDDEELARLIEKAGADIIHVDAMDP---------G--NHADLKKIRDI----S--TELFIIGNN----SVTTIESA 206 (233)
T ss_pred CcC-cCHHHHHHHHHHhCCCEEEECcCCC---------C--CCCcHHHHHHh----c--CCCEEEEEC----CcCCHHHH
Confidence 555 6778888888877 67665432221 1 13577766653 3 579999998 88899999
Q ss_pred HHHHHHcCCcEEEEEccc
Q psy7343 291 ARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt 308 (487)
.+.++ +|+|+||| ||.
T Consensus 207 ~~~l~-~GaD~Vmi-GR~ 222 (233)
T cd02911 207 KEMFS-YGADMVSV-ARA 222 (233)
T ss_pred HHHHH-cCCCEEEE-cCC
Confidence 98887 89999999 996
No 51
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=99.74 E-value=7.1e-17 Score=166.75 Aligned_cols=156 Identities=14% Similarity=0.152 Sum_probs=124.9
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhccC-cEEEEeecc--
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV-PVSCKIRIY-- 281 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~i-PV~vKiR~~-- 281 (487)
.++|.++|++++++ ||+||||+++ |..|.+.+.||+.+.++.+++.|++++|+++++- .|.+++...
T Consensus 158 i~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~ 237 (362)
T PRK10605 158 VNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGT 237 (362)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 36789999999888 9999999887 7789999999999999999999999999999853 344444221
Q ss_pred -------ccccc-HHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHh
Q psy7343 282 -------QDVNK-TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQ 353 (487)
Q Consensus 282 -------~d~~~-~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~ 353 (487)
.+.++ ..++++.+++.|+|.|.|+....... .....+..+++++.+++||+++|++ |++.+++++++
T Consensus 238 ~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~----~~~~~~~~~~ik~~~~~pv~~~G~~-~~~~ae~~i~~ 312 (362)
T PRK10605 238 FNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGG----EPYSDAFREKVRARFHGVIIGAGAY-TAEKAETLIGK 312 (362)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCC----ccccHHHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHc
Confidence 12234 67889999999999999954211110 1112456688999999999999986 89999999976
Q ss_pred cCCcEEEeccccccCcccccCC
Q psy7343 354 TGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 354 ~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
..||.|++||++++||++..+.
T Consensus 313 G~~D~V~~gR~~iadPd~~~k~ 334 (362)
T PRK10605 313 GLIDAVAFGRDYIANPDLVARL 334 (362)
T ss_pred CCCCEEEECHHhhhCccHHHHH
Confidence 6799999999999999998754
No 52
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.73 E-value=2.3e-17 Score=168.56 Aligned_cols=166 Identities=22% Similarity=0.276 Sum_probs=134.5
Q ss_pred CCCCeeeeeccC-------CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc---
Q psy7343 202 EDRPLIIQFCGN-------DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--- 271 (487)
Q Consensus 202 ~~~Pv~Vqi~g~-------d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--- 271 (487)
.+.|++|++.++ ..+++.+.++.+.+..|+||||.+||+. . |.....+++.+.++++++++.++
T Consensus 133 ~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~--~----~~~~~~~~~~~~~i~~~V~~~~~~~~ 206 (335)
T TIGR01036 133 YKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNT--P----GLRDLQYKAELRDLLTAVKQEQDGLR 206 (335)
T ss_pred CCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCC--C----CcccccCHHHHHHHHHHHHHHHHhhh
Confidence 457899998755 4689999999888778999999999974 1 12223689999999999998876
Q ss_pred ----CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc-----------CCCCCCCCCCCH----HHHHHHHhhC-
Q psy7343 272 ----VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV-----------DQRGMNTGLASW----EHITAVRKAL- 331 (487)
Q Consensus 272 ----iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~-----------~~~g~~~g~~~~----~~i~~i~~~~- 331 (487)
+||++|+....+.++..++++.++++|+|+|++..++. ...|+++|++.. ..+.++++.+
T Consensus 207 ~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~ 286 (335)
T TIGR01036 207 RVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQ 286 (335)
T ss_pred hccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhC
Confidence 99999995544444789999999999999999866542 134567776643 6777787777
Q ss_pred -CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC-cccccC
Q psy7343 332 -TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN-PALFTG 374 (487)
Q Consensus 332 -~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~-P~lf~~ 374 (487)
++|||++|||.|.+|+.+++ ..|||.|++|++++.+ |+++.+
T Consensus 287 ~~ipiig~GGI~~~~da~e~l-~aGA~~Vqv~ta~~~~Gp~~~~~ 330 (335)
T TIGR01036 287 GRLPIIGVGGISSAQDALEKI-RAGASLLQIYSGFIYWGPPLVKE 330 (335)
T ss_pred CCCCEEEECCCCCHHHHHHHH-HcCCcHHHhhHHHHHhCchHHHH
Confidence 69999999999999999999 6899999999999884 998764
No 53
>PLN02826 dihydroorotate dehydrogenase
Probab=99.72 E-value=2e-16 Score=164.76 Aligned_cols=177 Identities=18% Similarity=0.209 Sum_probs=138.2
Q ss_pred CCeeeeeccC-----CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhh---------
Q psy7343 204 RPLIIQFCGN-----DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA--------- 269 (487)
Q Consensus 204 ~Pv~Vqi~g~-----d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~--------- 269 (487)
.|++|+|.++ ..++|.+.++.+.+..|+|+||..||+. . + .....+++.+.++++++++.
T Consensus 187 ~~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylelNiScPNt--p-g---lr~lq~~~~l~~ll~~V~~~~~~~~~~~~ 260 (409)
T PLN02826 187 GILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINVSSPNT--P-G---LRKLQGRKQLKDLLKKVLAARDEMQWGEE 260 (409)
T ss_pred ceEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEEECCCCCC--C-C---cccccChHHHHHHHHHHHHHHHHhhhccc
Confidence 4899999766 4789999999888889999999999974 1 1 11235788888998888643
Q ss_pred ccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc------------CCCCCCCCCCC----HHHHHHHHhhC--
Q psy7343 270 VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV------------DQRGMNTGLAS----WEHITAVRKAL-- 331 (487)
Q Consensus 270 ~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~------------~~~g~~~g~~~----~~~i~~i~~~~-- 331 (487)
.++||++|+....+.++..++++.+.++|+|+|++..++. .+.|+++|.+. .+.+.++++.+
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 4689999995443444788999999999999999876432 23456788763 47788888887
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC-cccccCCCCCcHHHHHHHHHHHHHcC
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN-PALFTGQTRPAWELASEYLDLVAQYP 394 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~-P~lf~~~~~~~~~~~~~~l~~~~~~~ 394 (487)
++|||+.|||.|.+|+.+++ ..||+.|+++++++.+ |+++. ++.++..+++++.+
T Consensus 341 ~ipIIgvGGI~sg~Da~e~i-~AGAs~VQv~Ta~~~~Gp~~i~-------~I~~eL~~~l~~~G 396 (409)
T PLN02826 341 KIPLVGCGGVSSGEDAYKKI-RAGASLVQLYTAFAYEGPALIP-------RIKAELAACLERDG 396 (409)
T ss_pred CCcEEEECCCCCHHHHHHHH-HhCCCeeeecHHHHhcCHHHHH-------HHHHHHHHHHHHcC
Confidence 79999999999999999999 7999999999999885 88776 34455555565554
No 54
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.71 E-value=6.9e-16 Score=158.78 Aligned_cols=207 Identities=20% Similarity=0.255 Sum_probs=148.8
Q ss_pred CCccccccccCCCchHH------HHHHHHhCCccceeccccchhhhcChhHHHHH--HhcCCCCCCeeeeecc-----CC
Q psy7343 148 SPRFILAPMVDASELPW------RLLSRRYGSHLCYTPMVSAHQFIADKKLRQEI--LMSTPEDRPLIIQFCG-----ND 214 (487)
Q Consensus 148 ~~~~~lApma~~td~~f------r~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~--l~~~~~~~Pv~Vqi~g-----~d 214 (487)
+.|++.+||+|.++..+ ..++.+.|..++...+ .+.+.+++....+ ++....+.|++++|+. ++
T Consensus 60 ~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~---~~~~~~~~~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~ 136 (352)
T PRK05437 60 SAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQ---RAALKDPELADSFSVVRKVAPDGLLFANLGAVQLYGYG 136 (352)
T ss_pred cCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEeccc---HhhccChhhHHHHHHHHHHCCCceEEeecCccccCCCC
Confidence 67999999999987544 3477788866655433 3335566633332 2334457899998873 34
Q ss_pred HHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHH
Q psy7343 215 SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARML 294 (487)
Q Consensus 215 ~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~l 294 (487)
++.+.++++.++ .|+++||++|++........ .+++.+.+.++++++.+++||++|+.- .....+.++.+
T Consensus 137 ~~~~~~~~~~~~--adal~l~l~~~qe~~~p~g~-----~~f~~~le~i~~i~~~~~vPVivK~~g---~g~s~~~a~~l 206 (352)
T PRK05437 137 VEEAQRAVEMIE--ADALQIHLNPLQELVQPEGD-----RDFRGWLDNIAEIVSALPVPVIVKEVG---FGISKETAKRL 206 (352)
T ss_pred HHHHHHHHHhcC--CCcEEEeCccchhhcCCCCc-----ccHHHHHHHHHHHHHhhCCCEEEEeCC---CCCcHHHHHHH
Confidence 566666666663 68999999997765554431 367777788999999999999999742 12447889999
Q ss_pred HHcCCcEEEEEccccCC-------CC----CCC-----CCCCHHHHHHHHhh-CCCcEEEcCCCCCHHHHHHHHHhcCCc
Q psy7343 295 ERAGCQLLAVHGRTVDQ-------RG----MNT-----GLASWEHITAVRKA-LTIPVIANGNIQCLADVEACLAQTGVA 357 (487)
Q Consensus 295 e~~G~d~I~VhgRt~~~-------~g----~~~-----g~~~~~~i~~i~~~-~~iPVi~nGgI~s~~da~~~l~~~Gad 357 (487)
+++|+|+|.|+|++... ++ .+. |.+..+.+.++++. .++|||++|||+|..|+.+++ ..|||
T Consensus 207 ~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~k~l-~~GAd 285 (352)
T PRK05437 207 ADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIAKAL-ALGAD 285 (352)
T ss_pred HHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHH-HcCCC
Confidence 99999999998875310 10 001 22233677788887 499999999999999999999 67999
Q ss_pred EEEeccccccC
Q psy7343 358 GVMTAEGNLYN 368 (487)
Q Consensus 358 ~VmiGRa~l~~ 368 (487)
+|++||+++..
T Consensus 286 ~v~ig~~~l~~ 296 (352)
T PRK05437 286 AVGMAGPFLKA 296 (352)
T ss_pred EEEEhHHHHHH
Confidence 99999998864
No 55
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.70 E-value=2.2e-16 Score=161.53 Aligned_cols=207 Identities=22% Similarity=0.288 Sum_probs=146.5
Q ss_pred CCccccccccCCCchHH------HHHHHHhCCccceeccccchhhhcChhHHHHH--HhcCCCCCCeeeeeccC-----C
Q psy7343 148 SPRFILAPMVDASELPW------RLLSRRYGSHLCYTPMVSAHQFIADKKLRQEI--LMSTPEDRPLIIQFCGN-----D 214 (487)
Q Consensus 148 ~~~~~lApma~~td~~f------r~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~--l~~~~~~~Pv~Vqi~g~-----d 214 (487)
+.|++.+||+|.++... ...+.+.|..++.. +..+.+.+++..... ++....+.|++++++.. +
T Consensus 53 ~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~G---s~~~~~~~~~~~~~~~~vr~~~~~~p~i~nl~~~~~~~~~ 129 (333)
T TIGR02151 53 KAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVG---SQRAALKDPETADTFEVVREEAPNGPLIANIGAPQLVEGG 129 (333)
T ss_pred cCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEc---CchhhccChhhHhHHHHHHHhCCCCcEEeecCchhhcccc
Confidence 67999999999985443 35777888655443 233345666654333 33445689999998742 2
Q ss_pred HHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHH
Q psy7343 215 SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARML 294 (487)
Q Consensus 215 ~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~l 294 (487)
.+.+.+++++++ .|+++||++|++......+. .+++...+.++.+++.+++||++|.. + .....+.++.+
T Consensus 130 ~~~~~~~i~~i~--adal~i~ln~~q~~~~p~g~-----~~f~~~le~i~~i~~~~~vPVivK~~-g--~g~~~~~a~~L 199 (333)
T TIGR02151 130 PEEAQEAIDMIE--ADALAIHLNVLQELVQPEGD-----RNFKGWLEKIAEICSQLSVPVIVKEV-G--FGISKEVAKLL 199 (333)
T ss_pred HHHHHHHHHHhc--CCCEEEcCcccccccCCCCC-----cCHHHHHHHHHHHHHhcCCCEEEEec-C--CCCCHHHHHHH
Confidence 444555555553 68899999987765554432 24566778888899999999999963 2 12567899999
Q ss_pred HHcCCcEEEEEccccCC-------C--CCC--CCCCCH-----HHHHHHHh-hCCCcEEEcCCCCCHHHHHHHHHhcCCc
Q psy7343 295 ERAGCQLLAVHGRTVDQ-------R--GMN--TGLASW-----EHITAVRK-ALTIPVIANGNIQCLADVEACLAQTGVA 357 (487)
Q Consensus 295 e~~G~d~I~VhgRt~~~-------~--g~~--~g~~~~-----~~i~~i~~-~~~iPVi~nGgI~s~~da~~~l~~~Gad 357 (487)
+++|+|+|.|+||+... + ..+ ....+| +.+.++++ ..++|||++|||++.+|+.+++ ..|||
T Consensus 200 ~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVIasGGI~~~~di~kaL-alGAd 278 (333)
T TIGR02151 200 ADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPIIASGGLRTGLDVAKAI-ALGAD 278 (333)
T ss_pred HHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEEEECCCCCHHHHHHHH-HhCCC
Confidence 99999999999875321 0 000 111234 56667776 5689999999999999999999 58999
Q ss_pred EEEeccccccC
Q psy7343 358 GVMTAEGNLYN 368 (487)
Q Consensus 358 ~VmiGRa~l~~ 368 (487)
+|++||+++..
T Consensus 279 ~V~igr~~L~~ 289 (333)
T TIGR02151 279 AVGMARPFLKA 289 (333)
T ss_pred eehhhHHHHHH
Confidence 99999998854
No 56
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.66 E-value=2.3e-15 Score=153.63 Aligned_cols=207 Identities=23% Similarity=0.299 Sum_probs=142.3
Q ss_pred CCccccccccCCCc------hHHHHHHHHhCCccceeccccchhhhcChhHHH--HHHhcCCCCCCeeeeecc-----CC
Q psy7343 148 SPRFILAPMVDASE------LPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQ--EILMSTPEDRPLIIQFCG-----ND 214 (487)
Q Consensus 148 ~~~~~lApma~~td------~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~--~~l~~~~~~~Pv~Vqi~g-----~d 214 (487)
+.|++.+||+|.+. ......+.+.|..++ ..+....+.+++... +.++....+.|++++++. .+
T Consensus 52 ~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~---~Gs~~~~~~~~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~ 128 (326)
T cd02811 52 SAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMG---VGSQRAALEDPELAESFTVVREAPPNGPLIANLGAVQLNGYG 128 (326)
T ss_pred cCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeE---ecCchhhccChhhhhHHHHHHHhCCCceEEeecCccccCCCC
Confidence 67999999998872 334456666673221 122222345555442 233445556899998874 25
Q ss_pred HHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHH
Q psy7343 215 SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARML 294 (487)
Q Consensus 215 ~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~l 294 (487)
++.+.++.+.++ .|+++||+++++....... ..|++.+.+.++.+++.+++||++|+.- .....+.++.+
T Consensus 129 ~~~~~~~i~~~~--adalel~l~~~q~~~~~~~-----~~df~~~~~~i~~l~~~~~vPVivK~~g---~g~s~~~a~~l 198 (326)
T cd02811 129 VEEARRAVEMIE--ADALAIHLNPLQEAVQPEG-----DRDFRGWLERIEELVKALSVPVIVKEVG---FGISRETAKRL 198 (326)
T ss_pred HHHHHHHHHhcC--CCcEEEeCcchHhhcCCCC-----CcCHHHHHHHHHHHHHhcCCCEEEEecC---CCCCHHHHHHH
Confidence 666666666663 6889999988765444332 2366667788888888899999999721 12457889999
Q ss_pred HHcCCcEEEEEccccCC-------CCCCC-----------CCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcC
Q psy7343 295 ERAGCQLLAVHGRTVDQ-------RGMNT-----------GLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTG 355 (487)
Q Consensus 295 e~~G~d~I~VhgRt~~~-------~g~~~-----------g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~G 355 (487)
+++|+|+|.|+|+.... ++... +.+..+.+.++++.+ ++|||++|||++..|+.+++ ..|
T Consensus 199 ~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIiasGGIr~~~dv~kal-~lG 277 (326)
T cd02811 199 ADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIASGGIRNGLDIAKAL-ALG 277 (326)
T ss_pred HHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHH-HhC
Confidence 99999999998863210 11010 112235677777777 89999999999999999999 689
Q ss_pred CcEEEeccccccC
Q psy7343 356 VAGVMTAEGNLYN 368 (487)
Q Consensus 356 ad~VmiGRa~l~~ 368 (487)
||+|++||++|..
T Consensus 278 Ad~V~i~~~~L~~ 290 (326)
T cd02811 278 ADLVGMAGPFLKA 290 (326)
T ss_pred CCEEEEcHHHHHH
Confidence 9999999987754
No 57
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.65 E-value=6.1e-16 Score=155.91 Aligned_cols=166 Identities=25% Similarity=0.351 Sum_probs=125.4
Q ss_pred CCCeeeeeccCC---HHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee
Q psy7343 203 DRPLIIQFCGND---SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~g~d---~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR 279 (487)
+.||++.+.+.+ .+++.+.++.++...|+||||++||+.. .+.....+++...++++.+++..++||++|+.
T Consensus 96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~-----~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~ 170 (295)
T PF01180_consen 96 DIPVIASINGDSEEEIEDWAELAKRLEAGADALELNLSCPNVP-----GGRPFGQDPELVAEIVRAVREAVDIPVFVKLS 170 (295)
T ss_dssp CEEEEEEE-TSSSGHHHHHHHHHHHHHHHCSEEEEESTSTTST-----TSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-
T ss_pred ceeEEEEeecCCchhHHHHHHHHHHhcCcCCceEEEeeccCCC-----CccccccCHHHHHHHHHHHHhccCCCEEEEec
Confidence 579999999877 8899999998886699999999999642 13344567888999999999888999999995
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccc----------c--C---CCCCCCCCCC----HHHHHHHHhhCC--CcEEEc
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRT----------V--D---QRGMNTGLAS----WEHITAVRKALT--IPVIAN 338 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt----------~--~---~~g~~~g~~~----~~~i~~i~~~~~--iPVi~n 338 (487)
...+.....+.+..+.+.|+++|+...++ . . ..|+++|++. ...++++++.++ +|||++
T Consensus 171 p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~ 250 (295)
T PF01180_consen 171 PNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGV 250 (295)
T ss_dssp STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEE
T ss_pred CCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEe
Confidence 53233334555666668899999853321 1 1 1334677664 367888888887 999999
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEecccc-ccCcccccC
Q psy7343 339 GNIQCLADVEACLAQTGVAGVMTAEGN-LYNPALFTG 374 (487)
Q Consensus 339 GgI~s~~da~~~l~~~Gad~VmiGRa~-l~~P~lf~~ 374 (487)
|||.|.+|+.+++ ..||+.|++++++ +.+|+++.+
T Consensus 251 GGI~s~~da~e~l-~aGA~~Vqv~Sal~~~Gp~~~~~ 286 (295)
T PF01180_consen 251 GGIHSGEDAIEFL-MAGASAVQVCSALIYRGPGVIRR 286 (295)
T ss_dssp SS--SHHHHHHHH-HHTESEEEESHHHHHHGTTHHHH
T ss_pred CCcCCHHHHHHHH-HhCCCHheechhhhhcCcHHHHH
Confidence 9999999999999 7999999999999 557988873
No 58
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=99.61 E-value=1.3e-15 Score=156.47 Aligned_cols=159 Identities=25% Similarity=0.371 Sum_probs=121.3
Q ss_pred HHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEEeeccc-
Q psy7343 216 KNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIRIYQ- 282 (487)
Q Consensus 216 ~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR~~~- 282 (487)
++|.++|++++++ ||+||||+++ |..|.+++.||+.+.++.+++.|++++||++++ .||.+++....
T Consensus 149 ~~f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~ 228 (341)
T PF00724_consen 149 EDFAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDF 228 (341)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCS
T ss_pred HHHHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecc
Confidence 6889999999888 9999999986 888999999999999999999999999999984 55666654421
Q ss_pred -----ccccHHHHHHHHHHcCCcEEEEEccc------cCCCCCC--CCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHH
Q psy7343 283 -----DVNKTVEYARMLERAGCQLLAVHGRT------VDQRGMN--TGLASWEHITAVRKALTIPVIANGNIQCLADVEA 349 (487)
Q Consensus 283 -----d~~~~~e~a~~le~~G~d~I~VhgRt------~~~~g~~--~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~ 349 (487)
+.++..++++.+++.|+|.+.++.-. ....... ......+..+.+++.+++|||++|+|.+++.+++
T Consensus 229 ~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~ 308 (341)
T PF00724_consen 229 VEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEK 308 (341)
T ss_dssp STTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHH
Confidence 22455677899999999987653211 0111001 1112347788899999999999999999999999
Q ss_pred HHHhcCCcEEEeccccccCcccccC
Q psy7343 350 CLAQTGVAGVMTAEGNLYNPALFTG 374 (487)
Q Consensus 350 ~l~~~Gad~VmiGRa~l~~P~lf~~ 374 (487)
++++..||.|.+||++++||++.++
T Consensus 309 ~l~~g~~DlV~~gR~~ladPd~~~k 333 (341)
T PF00724_consen 309 ALEEGKADLVAMGRPLLADPDLPNK 333 (341)
T ss_dssp HHHTTSTSEEEESHHHHH-TTHHHH
T ss_pred HHhcCCceEeeccHHHHhCchHHHH
Confidence 9988889999999999999999764
No 59
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.55 E-value=5.2e-14 Score=145.06 Aligned_cols=225 Identities=16% Similarity=0.112 Sum_probs=137.7
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCC-CeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPM 156 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Ga-dl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApm 156 (487)
+.++++|||.++|+.+||..+.++|+ +++.++.+. ...+..+++..|+.. ..+
T Consensus 47 ~~Piv~a~M~gVt~~~la~avs~~GglGvl~~~gl~---------------~~~~~~e~l~~qi~~-----~~~------ 100 (368)
T PRK08649 47 EIPIIASPMDAVVSPETAIELGKLGGLGVLNLEGLW---------------TRYEDPEPILDEIAS-----LGK------ 100 (368)
T ss_pred cCcEeccCCcccCCHHHHHHHHhCCCceEEeecccc---------------ccCCCHHHHHHHHHh-----cCc------
Confidence 55899999999999999999999998 777733332 223345567777521 111
Q ss_pred cCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEee
Q psy7343 157 VDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDIN 235 (487)
Q Consensus 157 a~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN 235 (487)
..+....++.+.. | .+++...++++..... .|.++++- ++.+..+.++.+.++ .|.|
T Consensus 101 -----~~~~~~~~~~~~~----P--------~~p~l~~~iv~~~~~~-~V~v~vr~-~~~~~~e~a~~l~eaGvd~I--- 158 (368)
T PRK08649 101 -----DEATRLMQELYAE----P--------IKPELITERIAEIRDA-GVIVAVSL-SPQRAQELAPTVVEAGVDLF--- 158 (368)
T ss_pred -----HHHHHHHHHhhcC----C--------CCHHHHHHHHHHHHhC-eEEEEEec-CCcCHHHHHHHHHHCCCCEE---
Confidence 0111223333211 1 4555666666422211 35566654 344566777766666 4444
Q ss_pred cCCCcceeeccCccccc---c-CChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCC
Q psy7343 236 IGCPQMVAKRGHYGAYL---Q-DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQ 311 (487)
Q Consensus 236 ~GcP~~i~~~gr~G~~l---~-~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~ 311 (487)
+.|+|+..+. . .+|..+.++++. .++||++. ++.+..++ +.+.++|||+|++ ||....
T Consensus 159 -------~vhgrt~~~~h~~~~~~~~~i~~~ik~----~~ipVIaG-----~V~t~e~A-~~l~~aGAD~V~V-G~G~Gs 220 (368)
T PRK08649 159 -------VIQGTVVSAEHVSKEGEPLNLKEFIYE----LDVPVIVG-----GCVTYTTA-LHLMRTGAAGVLV-GIGPGA 220 (368)
T ss_pred -------EEeccchhhhccCCcCCHHHHHHHHHH----CCCCEEEe-----CCCCHHHH-HHHHHcCCCEEEE-CCCCCc
Confidence 4444433222 1 257666555443 58999983 55555544 5555699999999 775421
Q ss_pred C---CCCC--CCCCHHHHHHHHhh-------C---CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCc
Q psy7343 312 R---GMNT--GLASWEHITAVRKA-------L---TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 312 ~---g~~~--g~~~~~~i~~i~~~-------~---~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
. .... |.+....+.++.+. . ++|||+.|||.+..|+.+.+ ..|||+||+|+.+..-.
T Consensus 221 ~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAl-alGAd~Vm~Gs~fa~t~ 292 (368)
T PRK08649 221 ACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAI-ACGADAVMLGSPLARAA 292 (368)
T ss_pred CCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHH-HcCCCeecccchhcccc
Confidence 0 0011 23344455554332 1 59999999999999999999 79999999999988753
No 60
>PLN02411 12-oxophytodienoate reductase
Probab=99.54 E-value=3.9e-14 Score=147.77 Aligned_cols=160 Identities=18% Similarity=0.177 Sum_probs=120.9
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhccCc-EEEEeecccc
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVP-VSCKIRIYQD 283 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iP-V~vKiR~~~d 283 (487)
.++|+++|++++++ ||+||||+++ |..|.+.+.||+.+.++.+++.||+++||++++-. |.+++....+
T Consensus 164 i~~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~ 243 (391)
T PLN02411 164 VEHYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAID 243 (391)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEccccc
Confidence 36789999999887 9999999886 88899999999999999999999999999998533 4444432111
Q ss_pred ---------cccHHHHHHHHHHc------CCcEEEEEccccCCCC----CCCCC-CCH-HHHHHHHhhCCCcEEEcCCCC
Q psy7343 284 ---------VNKTVEYARMLERA------GCQLLAVHGRTVDQRG----MNTGL-ASW-EHITAVRKALTIPVIANGNIQ 342 (487)
Q Consensus 284 ---------~~~~~e~a~~le~~------G~d~I~VhgRt~~~~g----~~~g~-~~~-~~i~~i~~~~~iPVi~nGgI~ 342 (487)
.++..++++.+++. |+|.|.|......... ...+. ..+ ...+++++.+++||+++|+|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i- 322 (391)
T PLN02411 244 HLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAYQGTFMCSGGF- 322 (391)
T ss_pred ccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHcCCCEEEECCC-
Confidence 12346677777763 5999999643221100 00111 112 45688999999999999999
Q ss_pred CHHHHHHHHHhcCCcEEEeccccccCcccccCC
Q psy7343 343 CLADVEACLAQTGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 343 s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
+.+++++++++..||.|.+||++++||+|..+.
T Consensus 323 ~~~~a~~~l~~g~aDlV~~gR~~iadPdl~~k~ 355 (391)
T PLN02411 323 TRELGMQAVQQGDADLVSYGRLFISNPDLVLRF 355 (391)
T ss_pred CHHHHHHHHHcCCCCEEEECHHHHhCccHHHHH
Confidence 579999999666699999999999999997654
No 61
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=99.53 E-value=4.8e-14 Score=138.08 Aligned_cols=120 Identities=22% Similarity=0.247 Sum_probs=100.3
Q ss_pred ccccccCChHHHHHHHHHHhhhcc--CcE---EEEeecccc--cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCC
Q psy7343 248 YGAYLQDDWPLLTNLVSSLRQAVQ--VPV---SCKIRIYQD--VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320 (487)
Q Consensus 248 ~G~~l~~d~~~i~eiv~~v~~~~~--iPV---~vKiR~~~d--~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~ 320 (487)
.|+.+..||+++.++++.+.+.+. +++ .++++ ||+ ..+..++++.+++.|++.|++|+|++.+. ++|+ +
T Consensus 103 iGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~-Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~--~~G~-d 178 (241)
T PRK14024 103 IGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAAR-GWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGT--LTGP-N 178 (241)
T ss_pred ECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccC-CeeecCccHHHHHHHHHhcCCCEEEEEeecCCCC--ccCC-C
Confidence 377788999999999998876653 344 33332 553 23678999999999999999999999887 7775 9
Q ss_pred HHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHH--hcCCcEEEeccccccCccc
Q psy7343 321 WEHITAVRKALTIPVIANGNIQCLADVEACLA--QTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 321 ~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~--~~Gad~VmiGRa~l~~P~l 371 (487)
|+.++++++.+++||++||||+|.+|+.++.+ .+|||+||+||+++.++.-
T Consensus 179 ~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~ 231 (241)
T PRK14024 179 LELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFT 231 (241)
T ss_pred HHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCC
Confidence 99999999999999999999999999999863 4699999999999998643
No 62
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.51 E-value=5.7e-13 Score=129.68 Aligned_cols=187 Identities=23% Similarity=0.286 Sum_probs=129.1
Q ss_pred CCccccccccCCCchHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCH-HHHHHHHHhh
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDS-KNLTEAAKLA 225 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~-~~~~~aa~~~ 225 (487)
..|+++|||+++++..++..+.+.|+ +++.+++++.+.+....+...+ .. +.|+.+++..+++ ....+.++.+
T Consensus 2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~---~~--~~~~~v~~i~~~~~~~~~~~~~~~ 76 (236)
T cd04730 2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRA---LT--DKPFGVNLLVPSSNPDFEALLEVA 76 (236)
T ss_pred CCCEECCCCCCCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHHH---hc--CCCeEEeEecCCCCcCHHHHHHHH
Confidence 35889999999999999988888875 6665566654443332222211 11 4578899887653 2344555555
Q ss_pred CCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEE
Q psy7343 226 EPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304 (487)
Q Consensus 226 ~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V 304 (487)
.+. .|+|.++.+.+ .+ +++.+++ .+++++.++ ...+.++.+.+.|+|+|.+
T Consensus 77 ~~~g~d~v~l~~~~~----------------~~----~~~~~~~-~~i~~i~~v-------~~~~~~~~~~~~gad~i~~ 128 (236)
T cd04730 77 LEEGVPVVSFSFGPP----------------AE----VVERLKA-AGIKVIPTV-------TSVEEARKAEAAGADALVA 128 (236)
T ss_pred HhCCCCEEEEcCCCC----------------HH----HHHHHHH-cCCEEEEeC-------CCHHHHHHHHHcCCCEEEE
Confidence 554 78887765521 12 2333333 367887775 2235566777899999999
Q ss_pred EccccCCCCCCCCC---CCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 305 HGRTVDQRGMNTGL---ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 305 hgRt~~~~g~~~g~---~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+++.... ..+. ..++.++++++.+++||+++|||.+++++.+++ ..|+|+|++|++++..+..
T Consensus 129 ~~~~~~G---~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l-~~GadgV~vgS~l~~~~e~ 194 (236)
T cd04730 129 QGAEAGG---HRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAAL-ALGADGVQMGTRFLATEES 194 (236)
T ss_pred eCcCCCC---CCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHH-HcCCcEEEEchhhhcCccc
Confidence 8873321 2222 357899999999999999999999999999999 6899999999999887754
No 63
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.49 E-value=9.7e-13 Score=133.14 Aligned_cols=184 Identities=18% Similarity=0.180 Sum_probs=123.8
Q ss_pred CCccccccccCCCchHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHh--cCCCCCCeeeeeccCCHHHHHHHHHh
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILM--STPEDRPLIIQFCGNDSKNLTEAAKL 224 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~--~~~~~~Pv~Vqi~g~d~~~~~~aa~~ 224 (487)
+.|++++||.++++..+-....+.|. ++..... ..++..++.++ +...+.|+.+++....+. +.+..+.
T Consensus 11 ~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~-------~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~-~~~~~~~ 82 (307)
T TIGR03151 11 EYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGN-------APPDVVRKEIRKVKELTDKPFGVNIMLLSPF-VDELVDL 82 (307)
T ss_pred CCCEEcCCCCCCCCHHHHHHHHhCCCcceecccc-------CCHHHHHHHHHHHHHhcCCCcEEeeecCCCC-HHHHHHH
Confidence 57999999999999887765566553 4433211 12333333332 122367999998743322 2233333
Q ss_pred -hCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEE
Q psy7343 225 -AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLA 303 (487)
Q Consensus 225 -~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~ 303 (487)
++...+.|.++.|. ++ ++++.+++. ++.|+..+ ...+.++.+++.|+|.|.
T Consensus 83 ~~~~~v~~v~~~~g~-----------------p~---~~i~~lk~~-g~~v~~~v-------~s~~~a~~a~~~GaD~Iv 134 (307)
T TIGR03151 83 VIEEKVPVVTTGAGN-----------------PG---KYIPRLKEN-GVKVIPVV-------ASVALAKRMEKAGADAVI 134 (307)
T ss_pred HHhCCCCEEEEcCCC-----------------cH---HHHHHHHHc-CCEEEEEc-------CCHHHHHHHHHcCCCEEE
Confidence 33334444443332 22 345556554 77887765 446778899999999999
Q ss_pred EEccccCCCCCCCC-CCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 304 VHGRTVDQRGMNTG-LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 304 VhgRt~~~~g~~~g-~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+||+... ++.| ..+++.++++++.+++|||++|||.+.+++.+++ ..|||+|++|+.++.-+.-
T Consensus 135 v~g~eag---Gh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al-~~GA~gV~iGt~f~~t~Es 199 (307)
T TIGR03151 135 AEGMESG---GHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAF-ALGAEAVQMGTRFLCAKEC 199 (307)
T ss_pred EECcccC---CCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHH-HcCCCEeecchHHhccccc
Confidence 9999433 2333 3478999999999999999999999999999999 5999999999987776543
No 64
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.49 E-value=3.8e-13 Score=138.69 Aligned_cols=170 Identities=19% Similarity=0.264 Sum_probs=126.7
Q ss_pred CCccccccccCCCchHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhC
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAE 226 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~ 226 (487)
+.|++++||.++++.+++....++|+ ++.. +.+|. .......|+..||++.++ .++++.++
T Consensus 47 ~~Piv~a~M~gVt~~~la~avs~~GglGvl~-----~~gl~----------~~~~~~e~l~~qi~~~~~---~~~~~~~~ 108 (368)
T PRK08649 47 EIPIIASPMDAVVSPETAIELGKLGGLGVLN-----LEGLW----------TRYEDPEPILDEIASLGK---DEATRLMQ 108 (368)
T ss_pred cCcEeccCCcccCCHHHHHHHHhCCCceEEe-----ecccc----------ccCCCHHHHHHHHHhcCc---HHHHHHHH
Confidence 67999999999999999999999886 5533 22222 011112344555655444 33444444
Q ss_pred CcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEc
Q psy7343 227 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHG 306 (487)
Q Consensus 227 ~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~Vhg 306 (487)
+.. .-| .+++++.++++++++. + |.+++|+ +..+..+.++.+.++|+|.|++||
T Consensus 109 ~~~-------~~P--------------~~p~l~~~iv~~~~~~-~--V~v~vr~--~~~~~~e~a~~l~eaGvd~I~vhg 162 (368)
T PRK08649 109 ELY-------AEP--------------IKPELITERIAEIRDA-G--VIVAVSL--SPQRAQELAPTVVEAGVDLFVIQG 162 (368)
T ss_pred Hhh-------cCC--------------CCHHHHHHHHHHHHhC-e--EEEEEec--CCcCHHHHHHHHHHCCCCEEEEec
Confidence 431 012 3699999999999986 4 5556655 345688999999999999999999
Q ss_pred cccCCCCCCCCCC-CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 307 RTVDQRGMNTGLA-SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 307 Rt~~~~g~~~g~~-~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
||..+. |.+.. +|..+.++++..++|||+ |+|.|.+++++++ ++|||+|++|++-
T Consensus 163 rt~~~~--h~~~~~~~~~i~~~ik~~~ipVIa-G~V~t~e~A~~l~-~aGAD~V~VG~G~ 218 (368)
T PRK08649 163 TVVSAE--HVSKEGEPLNLKEFIYELDVPVIV-GGCVTYTTALHLM-RTGAAGVLVGIGP 218 (368)
T ss_pred cchhhh--ccCCcCCHHHHHHHHHHCCCCEEE-eCCCCHHHHHHHH-HcCCCEEEECCCC
Confidence 998887 66655 788888888888999999 8999999999999 5999999999875
No 65
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.9e-14 Score=146.35 Aligned_cols=152 Identities=25% Similarity=0.392 Sum_probs=120.8
Q ss_pred eeeeeccccCCCCCccccccccCC-CchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHhc--CCC-CCCee
Q psy7343 136 LIIQRTIFPRLGSPRFILAPMVDA-SELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILMS--TPE-DRPLI 207 (487)
Q Consensus 136 ~~vQl~~~~~~g~~~~~lApma~~-td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~~--~~~-~~Pv~ 207 (487)
+++|++ |+.|..++..+.. .+..+..|+.|+| ||++.|. |++|+++++.+.++++. ... +.||+
T Consensus 69 ~~vQl~-----gsdp~~l~eaA~~~~~~g~~~IdlN~G---CP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVT 140 (323)
T COG0042 69 VAVQLG-----GSDPELLAEAAKIAEELGADIIDLNCG---CPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVT 140 (323)
T ss_pred EEEEec-----CCCHHHHHHHHHHHHhcCCCEEeeeCC---CChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeE
Confidence 899974 4455555555433 3455678899999 9999886 88999999999999862 333 58999
Q ss_pred eeec-cCCHHH--HHHHHHhhCCcCcEEEeecCCCcceeeccCccccc---cCChHHHHHHHHHHhhhcc-CcEEEEeec
Q psy7343 208 IQFC-GNDSKN--LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTNLVSSLRQAVQ-VPVSCKIRI 280 (487)
Q Consensus 208 Vqi~-g~d~~~--~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l---~~d~~~i~eiv~~v~~~~~-iPV~vKiR~ 280 (487)
||+| |.|.++ ..++++.++++ || ..+++|+|+..+. ..||+.+.+ +++.++ +||++|+
T Consensus 141 VKiRlG~d~~~~~~~~ia~~~~~~--------g~-~~ltVHgRtr~~~y~~~ad~~~I~~----vk~~~~~ipvi~NG-- 205 (323)
T COG0042 141 VKIRLGWDDDDILALEIARILEDA--------GA-DALTVHGRTRAQGYLGPADWDYIKE----LKEAVPSIPVIANG-- 205 (323)
T ss_pred EEEecccCcccccHHHHHHHHHhc--------CC-CEEEEecccHHhcCCCccCHHHHHH----HHHhCCCCeEEeCC--
Confidence 9999 776655 67899999998 78 7899999987765 357888777 455555 9999998
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccCCCC
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g 313 (487)
|+.+..++.+.++.+|+|+||| ||.....+
T Consensus 206 --dI~s~~~a~~~l~~tg~DgVMi-gRga~~nP 235 (323)
T COG0042 206 --DIKSLEDAKEMLEYTGADGVMI-GRGALGNP 235 (323)
T ss_pred --CcCCHHHHHHHHHhhCCCEEEE-cHHHccCC
Confidence 9999999999999999999999 99765543
No 66
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.46 E-value=5.9e-12 Score=127.44 Aligned_cols=251 Identities=19% Similarity=0.220 Sum_probs=157.1
Q ss_pred CCccccccccCCCchHHHHHHHHhCCccceeccccchhhhc-ChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHHHHHhh
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIA-DKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTEAAKLA 225 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~-~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~aa~~~ 225 (487)
+.|++.++|...++..+..++++.|.-- .+.+ +++...+..+.... ..+.|.+. +.+++++.++.+++
T Consensus 37 ~~P~~inAM~t~iN~~LA~~a~~~G~~~---------~~~k~~~e~~~~~~r~~~~-~~l~v~~~vg~~~~~~~~~~~Lv 106 (326)
T PRK05458 37 KLPVVPANMQTIIDEKIAEWLAENGYFY---------IMHRFDPEARIPFIKDMHE-QGLIASISVGVKDDEYDFVDQLA 106 (326)
T ss_pred cCcEEEecccchhHHHHHHHHHHcCCEE---------EEecCCHHHHHHHHHhccc-cccEEEEEecCCHHHHHHHHHHH
Confidence 5699999997555656667777777311 1233 55555555543322 23456655 45677788888888
Q ss_pred CCc--CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc-CcEEEEeecccccccHHHHHHHHHHcCCcEE
Q psy7343 226 EPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEYARMLERAGCQLL 302 (487)
Q Consensus 226 ~~~--~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I 302 (487)
+.. .|.|.|....+ +-+.+.++++.+++..+ +||+++ ++. ..+.++.+.++|+|+|
T Consensus 107 ~ag~~~d~i~iD~a~g---------------h~~~~~e~I~~ir~~~p~~~vi~g-----~V~-t~e~a~~l~~aGad~i 165 (326)
T PRK05458 107 AEGLTPEYITIDIAHG---------------HSDSVINMIQHIKKHLPETFVIAG-----NVG-TPEAVRELENAGADAT 165 (326)
T ss_pred hcCCCCCEEEEECCCC---------------chHHHHHHHHHHHhhCCCCeEEEE-----ecC-CHHHHHHHHHcCcCEE
Confidence 774 48777764441 34567778888998885 788875 343 4566788899999999
Q ss_pred EEE---ccccCCC-CCCCCCCCHH--HHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCC
Q psy7343 303 AVH---GRTVDQR-GMNTGLASWE--HITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT 376 (487)
Q Consensus 303 ~Vh---gRt~~~~-g~~~g~~~~~--~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~ 376 (487)
.++ ||...+. ..-.+.++|. .++++++.+++|||++|||.++.|+.+++ ..|||+||+|+.++....=-.+.-
T Consensus 166 ~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaL-a~GA~aV~vG~~~~~~~espg~~~ 244 (326)
T PRK05458 166 KVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSI-RFGATMVMIGSLFAGHEESPGKTV 244 (326)
T ss_pred EECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHH-HhCCCEEEechhhcCCccCCCcee
Confidence 985 2221111 0122456775 58899988899999999999999999999 679999999998875322111000
Q ss_pred CCcHHHHHHHHHHHHHcC-------hh---HHHHHHHHHHHhHhhcCCCCcHHHHHHHHh--cCCHHHHHH
Q psy7343 377 RPAWELASEYLDLVAQYP-------VR---LQYARGHVFNMCHHLLTLPENSDVRLLVGK--TNHIKDLRK 435 (487)
Q Consensus 377 ~~~~~~~~~~l~~~~~~~-------~~---~~~~r~~l~~~~~~~~~~~~~~~~r~~l~~--~~~~~~~~~ 435 (487)
...-+..++|+....+|. ++ ....|+|+.+++..+ ...+|..+.. ++|++|+++
T Consensus 245 ~~~g~~~k~y~g~~~~~~~~~~~~~eG~e~~v~~~G~l~~~l~~l-----~~gLr~~m~~~Ga~~i~el~~ 310 (326)
T PRK05458 245 EIDGKLYKEYFGSASEFQKGEYKNVEGKKILVPHKGSLKDTLTEM-----EQDLQSSISYAGGRDLDAIRK 310 (326)
T ss_pred eecchhHHHhhCcHhhhccccccccCCceEEecccCCHHHHHHHH-----HHHHHHHHHHhCCCCHHHHhc
Confidence 001123344443333332 11 123456776665432 2466666644 467877664
No 67
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.46 E-value=1.9e-13 Score=138.09 Aligned_cols=216 Identities=19% Similarity=0.203 Sum_probs=144.5
Q ss_pred CCceEEec-CCCCCCHHHHHHHHHcCCCeEEc---------------------cceeccccccC-cHHHHHHhhhCC--C
Q psy7343 78 SPRFILAP-MVDASELPWRLLSRRYGSHLCYT---------------------PMVSAHQFIAD-KKLRQEILMSTP--E 132 (487)
Q Consensus 78 ~~~~~LAP-Mag~td~pFR~l~~~~Gadl~~T---------------------EMi~a~~l~~~-~~~~~~~~~~~~--~ 132 (487)
++++++|| |.|+|+.+||.+++. |++.++| +|+++.++... .+...+.+.... .
T Consensus 11 ~npi~~aag~~~~~~~~~~~~~~~-G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~~~~ 89 (300)
T TIGR01037 11 KNPLILASGIMGSGVESLRRIDRS-GAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVREEF 89 (300)
T ss_pred CCCCEeCCcCCCCCHHHHHHHHHc-CCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHhccC
Confidence 66899999 589999999998876 9999999 89999999763 334344443322 3
Q ss_pred CCceeeeeccccCCCCCccccccccC-CCch-H-HHHHHHHhCCccceeccccchhhhcChhHHHHHHhc--CCCCCCee
Q psy7343 133 DRPLIIQRTIFPRLGSPRFILAPMVD-ASEL-P-WRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS--TPEDRPLI 207 (487)
Q Consensus 133 e~p~~vQl~~~~~~g~~~~~lApma~-~td~-~-fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~--~~~~~Pv~ 207 (487)
+.|+++|+++. ++..+ +.++. +.+. + +..+..|+| ||.....+..+..+++...++++. ...+.||+
T Consensus 90 ~~pl~~qi~g~----~~~~~-~~~a~~~~~~~~~~d~ielN~~---cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~ 161 (300)
T TIGR01037 90 PTPLIASVYGS----SVEEF-AEVAEKLEKAPPYVDAYELNLS---CPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVF 161 (300)
T ss_pred CCcEEEEeecC----CHHHH-HHHHHHHHhccCccCEEEEECC---CCCCCCCccccccCHHHHHHHHHHHHHhcCCCEE
Confidence 45999997432 22211 11111 1111 0 233455667 776666677888999888888862 23468999
Q ss_pred eeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCc-ceeec-------cCccc-cccCChHHHHHHHHHHhhhccCcEEEE
Q psy7343 208 IQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQ-MVAKR-------GHYGA-YLQDDWPLLTNLVSSLRQAVQVPVSCK 277 (487)
Q Consensus 208 Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~-~i~~~-------gr~G~-~l~~d~~~i~eiv~~v~~~~~iPV~vK 277 (487)
||+.. +.++..++++.++++ .|+|.++.+-+. ....+ ...|+ .....+....+.+..+++.+++||+++
T Consensus 162 vKi~~-~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~ 240 (300)
T TIGR01037 162 AKLSP-NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGV 240 (300)
T ss_pred EECCC-ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEE
Confidence 99985 445778888888776 899988643211 00000 01111 112234445567777888889999999
Q ss_pred eecccccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 278 IRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 278 iR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
+ ++.+..++.+.++ +|||+|++ ||..
T Consensus 241 G----GI~s~~da~~~l~-~GAd~V~i-gr~~ 266 (300)
T TIGR01037 241 G----GITSFEDALEFLM-AGASAVQV-GTAV 266 (300)
T ss_pred C----CCCCHHHHHHHHH-cCCCceee-cHHH
Confidence 8 7888899988886 89999999 8854
No 68
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.45 E-value=6.6e-13 Score=130.05 Aligned_cols=157 Identities=25% Similarity=0.294 Sum_probs=116.1
Q ss_pred HHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHc
Q psy7343 219 TEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERA 297 (487)
Q Consensus 219 ~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~ 297 (487)
.+.|++++++ ++.|.+|.|||+.+...| |..++++|+.+.+ +++.+++||++|.|++. ...++.|+++
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd~~~~g--g~~Rm~~p~~I~a----Ik~~V~iPVigk~Righ-----~~Ea~~L~~~ 95 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIEE----IMDAVSIPVMAKARIGH-----FVEAQILEAL 95 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCchHhhcC--CeeecCCHHHHHH----HHHhCCCCeEEeehhhH-----HHHHHHHHHc
Confidence 4678888887 999999999999877766 7888999998885 66678999999998863 4445556666
Q ss_pred CCcEEEEEc-----------------------------------------cccCC----------------------CCC
Q psy7343 298 GCQLLAVHG-----------------------------------------RTVDQ----------------------RGM 314 (487)
Q Consensus 298 G~d~I~Vhg-----------------------------------------Rt~~~----------------------~g~ 314 (487)
|+|.|.-+- ||..+ ..+
T Consensus 96 GvDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~g 175 (293)
T PRK04180 96 GVDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTS 175 (293)
T ss_pred CCCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhC
Confidence 666653211 11100 000
Q ss_pred CC----------CCCCHHHHHHHHhhCCCcEE--EcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCCCCcHHH
Q psy7343 315 NT----------GLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWEL 382 (487)
Q Consensus 315 ~~----------g~~~~~~i~~i~~~~~iPVi--~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~~~~ 382 (487)
|+ -.++|+.++++++..++||+ +.|||.|++++..++ +.|||+|++|++++..+.. .+.
T Consensus 176 yt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vm-e~GAdgVaVGSaI~ks~dP--------~~~ 246 (293)
T PRK04180 176 MSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMM-QLGADGVFVGSGIFKSGDP--------EKR 246 (293)
T ss_pred CCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHH-HhCCCEEEEcHHhhcCCCH--------HHH
Confidence 11 23578999999999999998 999999999999999 6999999999998854322 244
Q ss_pred HHHHHHHHHHcCh
Q psy7343 383 ASEYLDLVAQYPV 395 (487)
Q Consensus 383 ~~~~l~~~~~~~~ 395 (487)
.+.+.+.+..|.+
T Consensus 247 akafv~ai~~~~~ 259 (293)
T PRK04180 247 ARAIVEATTHYDD 259 (293)
T ss_pred HHHHHHHHHHcCC
Confidence 5666677777754
No 69
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.42 E-value=5.3e-12 Score=124.90 Aligned_cols=144 Identities=22% Similarity=0.282 Sum_probs=109.9
Q ss_pred eeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc------
Q psy7343 208 IQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY------ 281 (487)
Q Consensus 208 Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~------ 281 (487)
+++.| ....+.++.+++...++.|.|| +.+..+++.+.++++...+. .+.+++++|.+
T Consensus 77 v~~gG-Gi~s~~d~~~l~~~G~~~vvig--------------s~~~~~~~~~~~~~~~~~~~-~i~vsiD~k~g~~~~~~ 140 (258)
T PRK01033 77 LCYGG-GIKTLEQAKKIFSLGVEKVSIN--------------TAALEDPDLITEAAERFGSQ-SVVVSIDVKKNLGGKFD 140 (258)
T ss_pred EEECC-CCCCHHHHHHHHHCCCCEEEEC--------------hHHhcCHHHHHHHHHHhCCC-cEEEEEEEecCCCCcEE
Confidence 45554 3334445555554345566555 33456899999988877422 25677776644
Q ss_pred -----c---ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHh
Q psy7343 282 -----Q---DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQ 353 (487)
Q Consensus 282 -----~---d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~ 353 (487)
| ...+..++++.+++.|++.+.+|++++.+. +.| .+|+.++++++.+++|||++|||.|.+|+.++++.
T Consensus 141 v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~--~~G-~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~ 217 (258)
T PRK01033 141 VYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGT--MKG-YDLELLKSFRNALKIPLIALGGAGSLDDIVEAILN 217 (258)
T ss_pred EEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCC--cCC-CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 1 123678999999999999999999998876 677 59999999999999999999999999999999977
Q ss_pred cCCcEEEeccccccCcc
Q psy7343 354 TGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 354 ~Gad~VmiGRa~l~~P~ 370 (487)
+|||+|++|+++...-+
T Consensus 218 ~GvdgVivg~a~~~~~~ 234 (258)
T PRK01033 218 LGADAAAAGSLFVFKGV 234 (258)
T ss_pred CCCCEEEEcceeeeCcc
Confidence 99999999999887633
No 70
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.39 E-value=5.3e-13 Score=129.01 Aligned_cols=193 Identities=14% Similarity=0.174 Sum_probs=125.9
Q ss_pred CCCCCCHHHHHHHHHcCCCeEEccceeccccccCc--------------------HHHHHHhhhCCCCCceeeeeccccC
Q psy7343 86 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK--------------------KLRQEILMSTPEDRPLIIQRTIFPR 145 (487)
Q Consensus 86 Mag~td~pFR~l~~~~Gadl~~TEMi~a~~l~~~~--------------------~~~~~~~~~~~~e~p~~vQl~~~~~ 145 (487)
|+|+||..|.+-.+.+ +++++---++.+.-.+.. ....+.+....+..|+++|+...
T Consensus 1 mag~~d~~~~~~~~~~-~~~~~lgg~~~d~~t~~a~~~~~~rgr~ef~~~~e~~~~~i~~e~~~~~~~~~vivnv~~~-- 77 (231)
T TIGR00736 1 MAGITDAEFCRKFKDL-FAIVTLGGYNADRATYKASRDIEKRGRKEFSFNLEEFNSYIIEQIKKAESRALVSVNVRFV-- 77 (231)
T ss_pred CCCcchHHHHHhcCcC-cCEEEECCccCCHHHHHHHHHHHHcCCcccCcCcccHHHHHHHHHHHHhhcCCEEEEEecC--
Confidence 8999999987776654 777776665544332111 11111222223456899997532
Q ss_pred CCCCccc--cccccCCCchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHhc-CCCCCCeeeeecc-CCHHH
Q psy7343 146 LGSPRFI--LAPMVDASELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILMS-TPEDRPLIIQFCG-NDSKN 217 (487)
Q Consensus 146 ~g~~~~~--lApma~~td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~~-~~~~~Pv~Vqi~g-~d~~~ 217 (487)
++..+ ++++. .+ .+..+..|+| ||.+.+. |++|+++++.+.++++. ...+.||+|||+. .+..+
T Consensus 78 --~~ee~~~~a~~v--~~-~~d~IdiN~g---CP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~~~~ 149 (231)
T TIGR00736 78 --DLEEAYDVLLTI--AE-HADIIEINAH---CRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNCIPLD 149 (231)
T ss_pred --CHHHHHHHHHHH--hc-CCCEEEEECC---CCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCCcch
Confidence 22111 11111 11 1233556788 8887664 78899999999988862 2347899999994 45567
Q ss_pred HHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHH
Q psy7343 218 LTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLE 295 (487)
Q Consensus 218 ~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le 295 (487)
..++++.++++ +|+|-++.. +.+.-..+|+.+.+ +++.+ ++||++|+ ++.+.+++.++++
T Consensus 150 ~~~~a~~l~~aGad~i~Vd~~----------~~g~~~a~~~~I~~----i~~~~~~ipIIgNG----gI~s~eda~e~l~ 211 (231)
T TIGR00736 150 ELIDALNLVDDGFDGIHVDAM----------YPGKPYADMDLLKI----LSEEFNDKIIIGNN----SIDDIESAKEMLK 211 (231)
T ss_pred HHHHHHHHHHcCCCEEEEeeC----------CCCCchhhHHHHHH----HHHhcCCCcEEEEC----CcCCHHHHHHHHH
Confidence 78899988887 777766532 22111146766665 55566 49999998 9999999999998
Q ss_pred HcCCcEEEEEcccc
Q psy7343 296 RAGCQLLAVHGRTV 309 (487)
Q Consensus 296 ~~G~d~I~VhgRt~ 309 (487)
+|||+||| ||..
T Consensus 212 -~GAd~Vmv-gR~~ 223 (231)
T TIGR00736 212 -AGADFVSV-ARAI 223 (231)
T ss_pred -hCCCeEEE-cHhh
Confidence 89999999 8843
No 71
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=99.37 E-value=2.1e-11 Score=125.21 Aligned_cols=199 Identities=18% Similarity=0.170 Sum_probs=132.5
Q ss_pred CCccccccccCCC------chHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeecc-CCHHHHHH
Q psy7343 148 SPRFILAPMVDAS------ELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCG-NDSKNLTE 220 (487)
Q Consensus 148 ~~~~~lApma~~t------d~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g-~d~~~~~~ 220 (487)
+.|+++||++... +....+.+.+.|... +.+..-... .+++... ..+.|...|+.- .|.+...+
T Consensus 80 ~~Pv~iaP~g~~~l~~p~gE~~~ArAA~~~g~~~-----~lSt~ss~s---lEev~~~-~~~~~~wfQlY~~~dr~~~~~ 150 (367)
T TIGR02708 80 KSPFIMAPVAAHKLANEQGEVATARGVSEFGSIY-----TTSSYSTAD---LPEISEA-LNGTPHWFQFYMSKDDGINRD 150 (367)
T ss_pred ccccccCcHHHhhccCCcHHHHHHHHHHHcCCCe-----eecccccCC---HHHHHhh-cCCCceEEEEeccCCHHHHHH
Confidence 7799999987331 233345566666433 322211111 3333322 224589999984 56666678
Q ss_pred HHHhhCCc-CcEEEeecCCCcce-----ee-----------------ccCcc------cc--ccCChHHHHHHHHHHhhh
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQMV-----AK-----------------RGHYG------AY--LQDDWPLLTNLVSSLRQA 269 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~i-----~~-----------------~gr~G------~~--l~~d~~~i~eiv~~v~~~ 269 (487)
..++++++ +.+|=+....|..- .+ ++... .. -.-+|+. ++++++.
T Consensus 151 li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~----i~~l~~~ 226 (367)
T TIGR02708 151 IMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRD----IEEIAGY 226 (367)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHH----HHHHHHh
Confidence 88888877 78877766665310 00 01000 00 0123444 5557777
Q ss_pred ccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHH
Q psy7343 270 VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADV 347 (487)
Q Consensus 270 ~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da 347 (487)
+++||++|+ +. ..+.++.+.++|+|+|.|++....|. +.+++.|+.+.++++.+ ++|||++|||++..|+
T Consensus 227 ~~~PvivKG-----v~-~~eda~~a~~~Gvd~I~VS~HGGrq~--~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv 298 (367)
T TIGR02708 227 SGLPVYVKG-----PQ-CPEDADRALKAGASGIWVTNHGGRQL--DGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHV 298 (367)
T ss_pred cCCCEEEeC-----CC-CHHHHHHHHHcCcCEEEECCcCccCC--CCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHH
Confidence 899999995 22 36778888999999998855444454 56788899999999887 4999999999999999
Q ss_pred HHHHHhcCCcEEEeccccccC
Q psy7343 348 EACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 348 ~~~l~~~Gad~VmiGRa~l~~ 368 (487)
.+++ ..|||+|||||+++.-
T Consensus 299 ~KaL-alGAd~V~igR~~l~~ 318 (367)
T TIGR02708 299 FKAL-ASGADLVALGRPVIYG 318 (367)
T ss_pred HHHH-HcCCCEEEEcHHHHHH
Confidence 9999 5999999999976653
No 72
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.37 E-value=3.5e-11 Score=122.75 Aligned_cols=189 Identities=23% Similarity=0.232 Sum_probs=125.3
Q ss_pred CCccccccccCCCchHHHHHHHHhCC-ccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhC
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAE 226 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga-~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~ 226 (487)
+.|++.+||.++++..+.....+.|. ++....+ ..+...+.++.... ...+....+.+++....+..+++
T Consensus 34 ~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~--------~~~~~~~~i~~vk~-~l~v~~~~~~~~~~~~~~~~l~e 104 (325)
T cd00381 34 NIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNM--------SIEEQAEEVRKVKG-RLLVGAAVGTREDDKERAEALVE 104 (325)
T ss_pred CCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCC--------CHHHHHHHHHHhcc-CceEEEecCCChhHHHHHHHHHh
Confidence 67999999999999998865556553 5544322 11222333332222 22222223445555555555666
Q ss_pred CcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc-CcEEEEeecccccccHHHHHHHHHHcCCcEEEEE
Q psy7343 227 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVH 305 (487)
Q Consensus 227 ~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~Vh 305 (487)
...+.|+++++. | +.+...++++.+++..+ +||++. ++ ...+.++.+.++|+|+|.|+
T Consensus 105 agv~~I~vd~~~-------G--------~~~~~~~~i~~ik~~~p~v~Vi~G-----~v-~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 105 AGVDVIVIDSAH-------G--------HSVYVIEMIKFIKKKYPNVDVIAG-----NV-VTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred cCCCEEEEECCC-------C--------CcHHHHHHHHHHHHHCCCceEEEC-----CC-CCHHHHHHHHhcCCCEEEEC
Confidence 558888887643 1 22455667777887653 677761 33 44566788889999999985
Q ss_pred cc------ccCCCCCCCCCCCHHHHHHHHhhC---CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCc
Q psy7343 306 GR------TVDQRGMNTGLASWEHITAVRKAL---TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 306 gR------t~~~~g~~~g~~~~~~i~~i~~~~---~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
+. ++... ..+.+.+..+.++.+.. ++|||++|||.+..|+.+++ ..|||+||+|+.+....
T Consensus 164 ~g~G~~~~t~~~~--g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAl-a~GA~~VmiGt~fa~t~ 233 (325)
T cd00381 164 IGPGSICTTRIVT--GVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKAL-AAGADAVMLGSLLAGTD 233 (325)
T ss_pred CCCCcCcccceeC--CCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHH-HcCCCEEEecchhcccc
Confidence 32 22222 23567787777776654 69999999999999999999 69999999999998865
No 73
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.36 E-value=1.2e-11 Score=126.70 Aligned_cols=215 Identities=16% Similarity=0.147 Sum_probs=136.1
Q ss_pred ceeeeeccccCCCCCccccccccCC--Cc----hHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeee
Q psy7343 135 PLIIQRTIFPRLGSPRFILAPMVDA--SE----LPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208 (487)
Q Consensus 135 p~~vQl~~~~~~g~~~~~lApma~~--td----~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~V 208 (487)
.+.+++ ++..-+.|++++||... .. ....+.+.+.|...+.+-. + .. -.+++.... .+.+...
T Consensus 61 d~~t~~--lG~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~--s---~~---s~Eei~~~~-~~~~~wf 129 (351)
T cd04737 61 DTSTEL--LGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTY--S---NT---SLEEIAKAS-NGGPKWF 129 (351)
T ss_pred CCceEe--CCccccchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEecCC--C---CC---CHHHHHHhc-CCCCeEE
Confidence 344553 43223779999999733 11 2233455555643332211 1 11 133333322 2458999
Q ss_pred eec-cCCHHHHHHHHHhhCCc-CcEEEeecCCCcc--eeeccC--------------------ccccc-----cCChHHH
Q psy7343 209 QFC-GNDSKNLTEAAKLAEPH-CDGIDINIGCPQM--VAKRGH--------------------YGAYL-----QDDWPLL 259 (487)
Q Consensus 209 qi~-g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~--i~~~gr--------------------~G~~l-----~~d~~~i 259 (487)
|+. ..|.+...+..++++++ +.+|-+....|.. ....-+ .+... .-++...
T Consensus 130 QlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (351)
T cd04737 130 QLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLS 209 (351)
T ss_pred EEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhccCCCC
Confidence 998 45777777888888776 7777776655431 000000 00000 0011223
Q ss_pred HHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEE
Q psy7343 260 TNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIA 337 (487)
Q Consensus 260 ~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~ 337 (487)
.+.++++++.+++||++|+ + ...+.++.+.++|+|+|.|++....+. +.+++.++.+.++++.+ ++|||+
T Consensus 210 ~~~l~~lr~~~~~PvivKg-----v-~~~~dA~~a~~~G~d~I~vsnhGGr~l--d~~~~~~~~l~~i~~a~~~~i~vi~ 281 (351)
T cd04737 210 PADIEFIAKISGLPVIVKG-----I-QSPEDADVAINAGADGIWVSNHGGRQL--DGGPASFDSLPEIAEAVNHRVPIIF 281 (351)
T ss_pred HHHHHHHHHHhCCcEEEec-----C-CCHHHHHHHHHcCCCEEEEeCCCCccC--CCCchHHHHHHHHHHHhCCCCeEEE
Confidence 3555667878899999995 2 345677889999999999943332332 45667789999998888 699999
Q ss_pred cCCCCCHHHHHHHHHhcCCcEEEeccccccCc
Q psy7343 338 NGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 338 nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
+|||++..|+.+++ ..|||+||+||+++...
T Consensus 282 dGGIr~g~Di~kaL-alGA~~V~iGr~~l~~l 312 (351)
T cd04737 282 DSGVRRGEHVFKAL-ASGADAVAVGRPVLYGL 312 (351)
T ss_pred ECCCCCHHHHHHHH-HcCCCEEEECHHHHHHH
Confidence 99999999999999 69999999999877653
No 74
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=99.31 E-value=3.8e-11 Score=116.80 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=94.9
Q ss_pred ccccccCChHHHHHHHHHHhhhccCcEEEEee----ccc---ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCC
Q psy7343 248 YGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR----IYQ---DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320 (487)
Q Consensus 248 ~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR----~~~---d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~ 320 (487)
.|+.+..+++.+.++.+...+.+.+++.+|.+ .+| ...+..++++.+++.|++.|.+|++++.+. +.| ++
T Consensus 102 lg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~--~~G-~d 178 (233)
T PRK00748 102 IGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGT--LSG-PN 178 (233)
T ss_pred ECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCC--cCC-CC
Confidence 35666778999999888875554444443311 122 234678999999999999999999988776 667 79
Q ss_pred HHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 321 WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 321 ~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
|+.++++++.+++|||++|||.|.+|++++++.+|||+||+||+++..
T Consensus 179 ~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~ 226 (233)
T PRK00748 179 VEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEG 226 (233)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence 999999999999999999999999999999965559999999999876
No 75
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=99.31 E-value=6.1e-11 Score=121.54 Aligned_cols=207 Identities=23% Similarity=0.240 Sum_probs=135.3
Q ss_pred CCccccccccCC---Cc---hHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHH
Q psy7343 148 SPRFILAPMVDA---SE---LPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTE 220 (487)
Q Consensus 148 ~~~~~lApma~~---td---~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~ 220 (487)
+.|++++||... .. ....+.+.+.|...+.+-.- .. -.+++.+....+.|..+|+. ..|.+...+
T Consensus 64 ~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~lss~s-----~~---s~e~v~~~~~~~~~~w~Qly~~~d~~~~~~ 135 (344)
T cd02922 64 SLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNA-----SC---SLEEIVDARPPDQPLFFQLYVNKDRTKTEE 135 (344)
T ss_pred CCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEecCcc-----cC---CHHHHHHhcCCCCcEEEEEeecCCHHHHHH
Confidence 789999999832 21 22335555666433322111 11 13334333334568999997 567788888
Q ss_pred HHHhhCCc-CcEEEeecCCCccee--eccCcc---------------------c-cc--cCChHHHHHHHHHHhhhccCc
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQMVA--KRGHYG---------------------A-YL--QDDWPLLTNLVSSLRQAVQVP 273 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~i~--~~gr~G---------------------~-~l--~~d~~~i~eiv~~v~~~~~iP 273 (487)
..++++++ +++|-|+...|..-. +.-+.| . .. ..++....+.++++++.+++|
T Consensus 136 l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~P 215 (344)
T cd02922 136 LLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHTKLP 215 (344)
T ss_pred HHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhcCCc
Confidence 88888887 899988888873210 000000 0 00 112334455667788888999
Q ss_pred EEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh---C--CCcEEEcCCCCCHHHHH
Q psy7343 274 VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA---L--TIPVIANGNIQCLADVE 348 (487)
Q Consensus 274 V~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~---~--~iPVi~nGgI~s~~da~ 348 (487)
|++|+ +. ..+.++.+.++|+|+|.|.+....+.. ...+..+.+.++++. + ++|||+.|||++..|+.
T Consensus 216 vivKg-----v~-~~~dA~~a~~~G~d~I~vsnhgG~~~d--~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~ 287 (344)
T cd02922 216 IVLKG-----VQ-TVEDAVLAAEYGVDGIVLSNHGGRQLD--TAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVL 287 (344)
T ss_pred EEEEc-----CC-CHHHHHHHHHcCCCEEEEECCCcccCC--CCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHH
Confidence 99994 32 366778889999999999765433321 123345566666653 2 59999999999999999
Q ss_pred HHHHhcCCcEEEeccccccCccc
Q psy7343 349 ACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 349 ~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+++ ..|||+|+|||+++..+..
T Consensus 288 kal-aLGA~aV~iG~~~l~~l~~ 309 (344)
T cd02922 288 KAL-CLGAKAVGLGRPFLYALSA 309 (344)
T ss_pred HHH-HcCCCEEEECHHHHHHHhh
Confidence 999 7999999999999887643
No 76
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.30 E-value=9.9e-11 Score=109.08 Aligned_cols=189 Identities=23% Similarity=0.256 Sum_probs=121.1
Q ss_pred cccccCCC-chH--HHHHHHHhCCccceeccccchhhhcChh---HHHHHHhcCCCCCCeeeeeccCCHHHHHH-HHHhh
Q psy7343 153 LAPMVDAS-ELP--WRLLSRRYGSHLCYTPMVSAHQFIADKK---LRQEILMSTPEDRPLIIQFCGNDSKNLTE-AAKLA 225 (487)
Q Consensus 153 lApma~~t-d~~--fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~---~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~-aa~~~ 225 (487)
+++|.+.. +.. +.....+.|+++........+..-.... ..... ....+.|+.+++..++..+... .++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 80 (200)
T cd04722 3 LALLAGGPSGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEV--AAETDLPLGVQLAINDAAAAVDIAAAAA 80 (200)
T ss_pred eeccccCchHHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHH--HhhcCCcEEEEEccCCchhhhhHHHHHH
Confidence 45555543 222 2344445677665544443322111111 12111 2234689999998766555443 35566
Q ss_pred CCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEE
Q psy7343 226 EPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLA 303 (487)
Q Consensus 226 ~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~ 303 (487)
.+. +|+|++|.+|+.. ++...++++++++.+ ++|++++++...+... . .+.+.|+|.|.
T Consensus 81 ~~~g~d~v~l~~~~~~~--------------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~---~--~~~~~g~d~i~ 141 (200)
T cd04722 81 RAAGADGVEIHGAVGYL--------------AREDLELIRELREAVPDVKVVVKLSPTGELAA---A--AAEEAGVDEVG 141 (200)
T ss_pred HHcCCCEEEEeccCCcH--------------HHHHHHHHHHHHHhcCCceEEEEECCCCccch---h--hHHHcCCCEEE
Confidence 655 8999999999642 677778888888887 8999999865432221 1 17888999999
Q ss_pred EEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 304 VHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 304 VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
++++...+............+..+++..++||+++|||++++++.++++ .|||+|++||
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~-~Gad~v~vgs 200 (200)
T cd04722 142 LGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALA-LGADGVIVGS 200 (200)
T ss_pred EcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHH-hCCCEEEecC
Confidence 9877654431110001124566667778999999999999999999994 6999999997
No 77
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=99.29 E-value=4.1e-11 Score=116.66 Aligned_cols=112 Identities=24% Similarity=0.259 Sum_probs=90.0
Q ss_pred ccccCChHHHHHHHHHHhhhccCcEEEEeecc------------c---ccccHHHHHHHHHHcCCcEEEEEccccCCCCC
Q psy7343 250 AYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY------------Q---DVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314 (487)
Q Consensus 250 ~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~------------~---d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~ 314 (487)
+.++.+++.+.++++...+. .+++++++|.+ | ...+..++++.+++.|+|.|.+|++++.+.
T Consensus 104 ~~~l~~~~~~~~~~~~~~~~-~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~-- 180 (232)
T TIGR03572 104 TAALENPDLIEEAARRFGSQ-CVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGT-- 180 (232)
T ss_pred hhHhcCHHHHHHHHHHcCCc-eEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCC--
Confidence 44567899999888765333 25566665552 1 123578999999999999999999877654
Q ss_pred CCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 315 NTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 315 ~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
..| .+++.++++++.+++||+++|||+|.+|+.++++.+|||+|++|+++
T Consensus 181 ~~g-~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 181 MKG-YDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred cCC-CCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 444 58999999999999999999999999999997768999999999986
No 78
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.27 E-value=1.7e-10 Score=112.20 Aligned_cols=117 Identities=22% Similarity=0.279 Sum_probs=92.7
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeec------cc---ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI------YQ---DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA 319 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~------~~---d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~ 319 (487)
|+.+..+++.+.++.+.+.+. .+.++++.|. ++ ...+..++++.+++.|++.+++|++++.+. +.| +
T Consensus 102 gs~~l~dp~~~~~i~~~~g~~-~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~--~~g-~ 177 (234)
T cd04732 102 GTAAVKNPELVKELLKEYGGE-RIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGT--LSG-P 177 (234)
T ss_pred CchHHhChHHHHHHHHHcCCc-eEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCc--cCC-C
Confidence 445567899998888776431 1223333222 11 234788999999999999999999987765 555 7
Q ss_pred CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 320 SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 320 ~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
+|+.++++++.+++||+++|||++.+|+.+++ +.|||+||+||+++.++-
T Consensus 178 ~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~-~~Ga~gv~vg~~~~~~~~ 227 (234)
T cd04732 178 NFELYKELAAATGIPVIASGGVSSLDDIKALK-ELGVAGVIVGKALYEGKI 227 (234)
T ss_pred CHHHHHHHHHhcCCCEEEecCCCCHHHHHHHH-HCCCCEEEEeHHHHcCCC
Confidence 89999999999999999999999999999999 479999999999999874
No 79
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.26 E-value=6.1e-11 Score=116.21 Aligned_cols=115 Identities=22% Similarity=0.260 Sum_probs=91.4
Q ss_pred cccCChHHHHHHHHHHhh-hccCcEEEEeec----------cc--ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC
Q psy7343 251 YLQDDWPLLTNLVSSLRQ-AVQVPVSCKIRI----------YQ--DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG 317 (487)
Q Consensus 251 ~l~~d~~~i~eiv~~v~~-~~~iPV~vKiR~----------~~--d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g 317 (487)
.+..+|+.+.++++.+.+ .+-+++.+|.|. ++ +..+..++++.+++.|+|.|.+|+++.... ..|
T Consensus 102 ~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~--~~g 179 (243)
T cd04731 102 AAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGT--KKG 179 (243)
T ss_pred hhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCCC--CCC
Confidence 345689999998887743 344555555332 11 234678999999999999999999886543 333
Q ss_pred CCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 318 ~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
.+|+.++++++.+++||+++|||++++|+.++++.+|||+||+||+++..
T Consensus 180 -~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~ 229 (243)
T cd04731 180 -YDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFG 229 (243)
T ss_pred -CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcC
Confidence 58999999999999999999999999999999977899999999998765
No 80
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.23 E-value=6.1e-10 Score=112.47 Aligned_cols=187 Identities=21% Similarity=0.246 Sum_probs=129.1
Q ss_pred CCccccccccCCCchHHHHHHHHhCCccceeccccchhhhc-ChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHHHHHhh
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIA-DKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTEAAKLA 225 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~-~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~aa~~~ 225 (487)
+.|++.++|...++..+..++++.|. .+ .+.+ +++...+.++...... +.+.+. |..++++..+..++
T Consensus 34 ~~P~~inAM~t~in~~LA~~a~~~G~---~~------i~hK~~~E~~~sfvrk~k~~~-L~v~~SvG~t~e~~~r~~~lv 103 (321)
T TIGR01306 34 KLPVVPANMQTIIDEKLAEQLAENGY---FY------IMHRFDEESRIPFIKDMQERG-LFASISVGVKACEYEFVTQLA 103 (321)
T ss_pred cCcEEeeccchhhhHHHHHHHHHcCC---EE------EEecCCHHHHHHHHHhccccc-cEEEEEcCCCHHHHHHHHHHH
Confidence 66999999976666666778888873 21 1123 5555444554433222 244444 55677788888887
Q ss_pred CCc--CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEE
Q psy7343 226 EPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLA 303 (487)
Q Consensus 226 ~~~--~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~ 303 (487)
+.. .|.|-+... || +-+.+.+.++.+++.++.|+++++ ++ ...+.++.+.++|+|+|.
T Consensus 104 ~a~~~~d~i~~D~a-------hg--------~s~~~~~~i~~i~~~~p~~~vi~G----nV-~t~e~a~~l~~aGad~I~ 163 (321)
T TIGR01306 104 EEALTPEYITIDIA-------HG--------HSNSVINMIKHIKTHLPDSFVIAG----NV-GTPEAVRELENAGADATK 163 (321)
T ss_pred hcCCCCCEEEEeCc-------cC--------chHHHHHHHHHHHHhCCCCEEEEe----cC-CCHHHHHHHHHcCcCEEE
Confidence 765 455544322 23 346677788889988888877775 44 367788899999999999
Q ss_pred EE---ccc---cCCCCCCCCCCCH--HHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 304 VH---GRT---VDQRGMNTGLASW--EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 304 Vh---gRt---~~~~g~~~g~~~~--~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
|+ ||+ +...+ .|.+.| ..+.++++..++|||++|||++..|+.+++ ..|||+||+||.+-.
T Consensus 164 V~~G~G~~~~tr~~~g--~g~~~~~l~ai~ev~~a~~~pVIadGGIr~~~Di~KAL-a~GAd~Vmig~~~ag 232 (321)
T TIGR01306 164 VGIGPGKVCITKIKTG--FGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIAKSI-RFGASMVMIGSLFAG 232 (321)
T ss_pred ECCCCCccccceeeec--cCCCchHHHHHHHHHHhcCCeEEEECCcCcHHHHHHHH-HcCCCEEeechhhcC
Confidence 96 442 22221 133344 588899998999999999999999999999 689999999986654
No 81
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=99.21 E-value=5.2e-10 Score=108.69 Aligned_cols=114 Identities=24% Similarity=0.272 Sum_probs=91.8
Q ss_pred cccccCChHHHHHHHHHHh-hhccCcEEEEeec------ccc---cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSLR-QAVQVPVSCKIRI------YQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL 318 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~-~~~~iPV~vKiR~------~~d---~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~ 318 (487)
|+.+..+++.+.++++.+. +. +.++++.|. +|. ..+..++++.+++.|++.+++|.+++.+. ..|
T Consensus 101 gs~~l~d~~~~~~~~~~~g~~~--i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~--~~g- 175 (230)
T TIGR00007 101 GTAAVENPDLVKELLKEYGPER--IVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGT--LSG- 175 (230)
T ss_pred ChHHhhCHHHHHHHHHHhCCCc--EEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCC--cCC-
Confidence 4555578899988888764 22 344454442 222 24678899999999999999999988765 444
Q ss_pred CCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 319 ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 319 ~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
.+++.++++++.+++||+++|||++.+|+++++ .+|||+|++|++++.+
T Consensus 176 ~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~-~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 176 PNFELTKELVKAVNVPVIASGGVSSIDDLIALK-KLGVYGVIVGKALYEG 224 (230)
T ss_pred CCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HCCCCEEEEeHHHHcC
Confidence 689999999999999999999999999999988 6999999999999887
No 82
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.19 E-value=1.9e-10 Score=112.57 Aligned_cols=121 Identities=22% Similarity=0.296 Sum_probs=92.2
Q ss_pred cccccCChHHHHHHHHHHh-hhccCcEEEE---eec-ccc---cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSLR-QAVQVPVSCK---IRI-YQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~-~~~~iPV~vK---iR~-~~d---~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~ 320 (487)
|+.+..+++.+.++.+.+. +.+-+.+.++ +.. +|+ ..+..++++.+++.|++.|.+|+++..+. +.| .+
T Consensus 105 Gs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~--~~g-~~ 181 (241)
T PRK13585 105 GTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGL--LEG-VN 181 (241)
T ss_pred ChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCC--cCC-CC
Confidence 4555678888888877652 2221112221 111 222 22789999999999999999999876543 444 69
Q ss_pred HHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccccc
Q psy7343 321 WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373 (487)
Q Consensus 321 ~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~ 373 (487)
|+.++++++.+++||+++|||+|.+|+.+++ .+||++|++|++++.+|..+.
T Consensus 182 ~~~i~~i~~~~~iPvia~GGI~~~~di~~~~-~~Ga~gv~vgsa~~~~~~~~~ 233 (241)
T PRK13585 182 TEPVKELVDSVDIPVIASGGVTTLDDLRALK-EAGAAGVVVGSALYKGKFTLE 233 (241)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HcCCCEEEEEHHHhcCCcCHH
Confidence 9999999999999999999999999999976 799999999999999988654
No 83
>KOG2335|consensus
Probab=99.16 E-value=1.2e-10 Score=116.83 Aligned_cols=121 Identities=17% Similarity=0.294 Sum_probs=99.2
Q ss_pred HHHHhCCccceecccc-----chhhhcChhHHHHHHhc--CCCCCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCC
Q psy7343 167 LSRRYGSHLCYTPMVS-----AHQFIADKKLRQEILMS--TPEDRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGC 238 (487)
Q Consensus 167 i~~~~Ga~l~~t~~v~-----~~~Ll~~~~~~~~~l~~--~~~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~Gc 238 (487)
++.|+| || +++. |+.|+.+++++.++++. ...+.||++||| +.|.++..+.+++++++ ||
T Consensus 102 idlNcG---CP-q~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~a--------G~ 169 (358)
T KOG2335|consen 102 IDLNCG---CP-QKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDA--------GV 169 (358)
T ss_pred ccccCC---CC-HHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhC--------CC
Confidence 556788 77 4444 77889999999999873 445679999999 78899999999999998 88
Q ss_pred CcceeeccCccccc-----cCChHHHHHHHHHHhhhcc-CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 239 PQMVAKRGHYGAYL-----QDDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 239 P~~i~~~gr~G~~l-----~~d~~~i~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
..+++|||+..+- ..||+.+..+.+ .+. +||++|+ ++....|+-+.++.+|+||||+ ||+.
T Consensus 170 -~~ltVHGRtr~~kg~~~~pad~~~i~~v~~----~~~~ipviaNG----nI~~~~d~~~~~~~tG~dGVM~-argl 236 (358)
T KOG2335|consen 170 -SLLTVHGRTREQKGLKTGPADWEAIKAVRE----NVPDIPVIANG----NILSLEDVERCLKYTGADGVMS-ARGL 236 (358)
T ss_pred -cEEEEecccHHhcCCCCCCcCHHHHHHHHH----hCcCCcEEeeC----CcCcHHHHHHHHHHhCCceEEe-cchh
Confidence 7899999986542 567888776554 454 9999998 8889999999999999999999 8853
No 84
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.12 E-value=2.2e-09 Score=110.04 Aligned_cols=196 Identities=22% Similarity=0.232 Sum_probs=104.8
Q ss_pred CCccccccccCCCchHHHHHHHHhC-CccceeccccchhhhcChhHHHHHHh--cCCCCCCeeeeeccC--CHHHHH-HH
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYG-SHLCYTPMVSAHQFIADKKLRQEILM--STPEDRPLIIQFCGN--DSKNLT-EA 221 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~G-a~l~~t~~v~~~~Ll~~~~~~~~~l~--~~~~~~Pv~Vqi~g~--d~~~~~-~a 221 (487)
+.|++++||.+++...+-....|.| .+...+... +++...+.++ +...+.|+.|++... +..... ..
T Consensus 11 ~~PIiqapM~~is~~~LaaAVs~aGglG~l~~~~~-------~~~~l~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~~ 83 (330)
T PF03060_consen 11 KYPIIQAPMGGISTPELAAAVSNAGGLGFLGAGGL-------TPEQLREEIRKIRALTDKPFGVNLFLPPPDPADEEDAW 83 (330)
T ss_dssp SSSEEE---TTTSSHHHHHHHHHTTSBEEEECTTS-------SHHHHHHHHHHHHHH-SS-EEEEEETTSTTHHHH-HHH
T ss_pred CcCEEcCCCCCCChHHHHHHHHhCCCEeecccccc-------ChHHHHHHHHHHHhhccccccccccccCcccchhhhhh
Confidence 6799999999998888775555555 344432222 2233332221 111244999998732 322220 01
Q ss_pred HHhhCCcCcEEEeecCCC-------------cceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHH
Q psy7343 222 AKLAEPHCDGIDINIGCP-------------QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTV 288 (487)
Q Consensus 222 a~~~~~~~d~IdiN~GcP-------------~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~ 288 (487)
.+.+......+.+..+.| ..+..+. | .|. .++++.+++ .++.|+..+ ...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--G-----~p~--~~~i~~l~~-~gi~v~~~v-------~s~ 146 (330)
T PF03060_consen 84 PKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGF--G-----LPP--PEVIERLHA-AGIKVIPQV-------TSV 146 (330)
T ss_dssp HHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEES--S-----SC---HHHHHHHHH-TT-EEEEEE-------SSH
T ss_pred hhhhHHHHHHHHHHhCcccccccccccccceEEEEeec--c-----cch--HHHHHHHHH-cCCcccccc-------CCH
Confidence 111100000011111222 1111111 1 120 123334443 378888876 556
Q ss_pred HHHHHHHHcCCcEEEEEccccCCCCCCCC-C--CCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQRGMNTG-L--ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~~g~~~g-~--~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
+.++.+++.|+|+|++.|.- .|+..| . ..+.++.++++.+++|||+.|||.+.+++..++ ..|||+|++|+.+
T Consensus 147 ~~A~~a~~~G~D~iv~qG~e---AGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~iaaal-~lGA~gV~~GTrF 222 (330)
T PF03060_consen 147 REARKAAKAGADAIVAQGPE---AGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIAAAL-ALGADGVQMGTRF 222 (330)
T ss_dssp HHHHHHHHTT-SEEEEE-TT---SSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHHHHH-HCT-SEEEESHHH
T ss_pred HHHHHhhhcCCCEEEEeccc---cCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHHHHH-HcCCCEeecCCeE
Confidence 67788999999999997652 233444 2 257889999999999999999999999999999 7999999999999
Q ss_pred ccCccc
Q psy7343 366 LYNPAL 371 (487)
Q Consensus 366 l~~P~l 371 (487)
+.-+.-
T Consensus 223 l~t~Es 228 (330)
T PF03060_consen 223 LATEES 228 (330)
T ss_dssp HTSTTS
T ss_pred Eecccc
Confidence 877643
No 85
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.09 E-value=1.1e-09 Score=108.11 Aligned_cols=117 Identities=19% Similarity=0.212 Sum_probs=90.6
Q ss_pred cccccCChHHHHHHHHHHh-h----hcc-------CcEEEEeecccc--cccHHHHHHHHHHcCCcEEEEEccccCCCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSLR-Q----AVQ-------VPVSCKIRIYQD--VNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~-~----~~~-------iPV~vKiR~~~d--~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~ 314 (487)
|+.+..+|+.+.++.+.+. + .++ .|+.+++|.+.+ ..+..++++.+++.|++.+.+|+..+...
T Consensus 103 gt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~-- 180 (253)
T PRK02083 103 NSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGT-- 180 (253)
T ss_pred ChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCC--
Confidence 3444568999999888762 1 122 355777776543 23678899999999999999977443222
Q ss_pred CCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 315 NTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 315 ~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
..| .+|+.++++++.+++|||++|||.|.+|+.++++.+|||+|++|+++...
T Consensus 181 ~~g-~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 181 KNG-YDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred CCC-cCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 233 48999999999999999999999999999999966899999999988765
No 86
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=99.08 E-value=1.2e-09 Score=112.72 Aligned_cols=212 Identities=24% Similarity=0.247 Sum_probs=132.0
Q ss_pred ceeeeeccccCCCCCccccccccCCC--c----hHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeee
Q psy7343 135 PLIIQRTIFPRLGSPRFILAPMVDAS--E----LPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208 (487)
Q Consensus 135 p~~vQl~~~~~~g~~~~~lApma~~t--d----~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~V 208 (487)
.+..++ ++.--+.|++++||.+.. + ....+.+.+.|.. +..++.-... .+++..... .|...
T Consensus 47 D~st~~--lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~Gi~-----~~lss~s~~~---~e~ia~~~~--~~~~~ 114 (356)
T PF01070_consen 47 DTSTTF--LGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAGIP-----MMLSSQSSAS---LEEIAAASG--GPLWF 114 (356)
T ss_dssp BSSEEE--TTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHTSE-----EEEETTCSSC---HHHHHHHCT--SEEEE
T ss_pred CCCeee--CCccCCCCeEEcchhhhhhhccchHHHHHHHHhccCcc-----eeccCCccCC---HHHHHhhcc--CCeEE
Confidence 355554 321127899999998542 1 1233566666743 3332221111 233333222 78899
Q ss_pred eec-cCCHHHHHHHHHhhCCc-CcEEEeecCCCccee------------------------eccCc--------------
Q psy7343 209 QFC-GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVA------------------------KRGHY-------------- 248 (487)
Q Consensus 209 qi~-g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~------------------------~~gr~-------------- 248 (487)
||. -.|.+...+..++++++ ++++-++...|.... .|.+.
T Consensus 115 Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 194 (356)
T PF01070_consen 115 QLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNEAPPPG 194 (356)
T ss_dssp EEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----CSSSS
T ss_pred EEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccccccCC
Confidence 987 46778888888888877 888877766533100 01110
Q ss_pred --cc---cc---cCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCC
Q psy7343 249 --GA---YL---QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320 (487)
Q Consensus 249 --G~---~l---~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~ 320 (487)
+. .. .-|+....+-++.+++.+++||++|+ + -..+-++.+.+.|+|+|.|++.+..+. -.+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKg-----v-~~~~da~~~~~~G~~~i~vs~hGGr~~--d~~~~~ 266 (356)
T PF01070_consen 195 DNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKG-----V-LSPEDAKRAVDAGVDGIDVSNHGGRQL--DWGPPT 266 (356)
T ss_dssp TSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEE-----E--SHHHHHHHHHTT-SEEEEESGTGTSS--TTS-BH
T ss_pred CcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEe-----c-ccHHHHHHHHhcCCCEEEecCCCcccC--cccccc
Confidence 00 00 01233333446667788999999996 3 334556788899999999977665554 335667
Q ss_pred HHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 321 WEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 321 ~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
.+.+.++++.+ ++||++.|||++..|+.+.+ ..||++|.+||+++.
T Consensus 267 ~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kal-aLGA~~v~igr~~l~ 314 (356)
T PF01070_consen 267 IDALPEIRAAVGDDIPIIADGGIRRGLDVAKAL-ALGADAVGIGRPFLY 314 (356)
T ss_dssp HHHHHHHHHHHTTSSEEEEESS--SHHHHHHHH-HTT-SEEEESHHHHH
T ss_pred ccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHH-HcCCCeEEEccHHHH
Confidence 78888998876 69999999999999999999 799999999997654
No 87
>KOG1436|consensus
Probab=99.07 E-value=2.2e-09 Score=105.29 Aligned_cols=177 Identities=21% Similarity=0.240 Sum_probs=121.3
Q ss_pred CCCeeeeeccC--C---HHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhh-------c
Q psy7343 203 DRPLIIQFCGN--D---SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA-------V 270 (487)
Q Consensus 203 ~~Pv~Vqi~g~--d---~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~-------~ 270 (487)
..++.|++..+ + ..++++-.+..-+.+|...||..||+.--. -++..+.++ .+++..+..+ .
T Consensus 178 ~~~lGVnlgknk~s~d~~~dy~~gV~~~g~~adylviNvSsPNtpGl-----r~lq~k~~L-~~ll~~v~~a~~~~~~~~ 251 (398)
T KOG1436|consen 178 PAKLGVNLGKNKTSEDAILDYVEGVRVFGPFADYLVINVSSPNTPGL-----RSLQKKSDL-RKLLTKVVQARDKLPLGK 251 (398)
T ss_pred cccceeeeccccCCcchHHHHHHHhhhcccccceEEEeccCCCCcch-----hhhhhHHHH-HHHHHHHHHHHhccccCC
Confidence 34677887622 2 335555555555668999999999974111 122223332 2222222221 1
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc------------cCCCCCCCCCCC----HHHHHHHHhhC--C
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT------------VDQRGMNTGLAS----WEHITAVRKAL--T 332 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt------------~~~~g~~~g~~~----~~~i~~i~~~~--~ 332 (487)
..|+.+|+-..-...+..|++..+.+.++|++++.+-| +.+.|+.+|++. .+.++++...+ +
T Consensus 252 ~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~ 331 (398)
T KOG1436|consen 252 KPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGK 331 (398)
T ss_pred CCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCC
Confidence 45899998554445678899999999999999996643 235677888764 36777777776 7
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC-cccccCCCCCcHHHHHHHHHHHHHc
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN-PALFTGQTRPAWELASEYLDLVAQY 393 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~-P~lf~~~~~~~~~~~~~~l~~~~~~ 393 (487)
||||+.|||.|.+|+.+.+ ..||..|++++++... |-+|.++ .++..++++..
T Consensus 332 IpiIG~GGV~SG~DA~Eki-raGASlvQlyTal~yeGp~i~~kI-------k~El~~ll~~k 385 (398)
T KOG1436|consen 332 IPIIGCGGVSSGKDAYEKI-RAGASLVQLYTALVYEGPAIIEKI-------KRELSALLKAK 385 (398)
T ss_pred CceEeecCccccHhHHHHH-hcCchHHHHHHHHhhcCchhHHHH-------HHHHHHHHHhc
Confidence 9999999999999999999 7999999999998776 8887743 34555555544
No 88
>PLN02535 glycolate oxidase
Probab=99.07 E-value=2.4e-09 Score=110.14 Aligned_cols=205 Identities=19% Similarity=0.183 Sum_probs=131.9
Q ss_pred CCccccccccCC--Cc----hHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHH
Q psy7343 148 SPRFILAPMVDA--SE----LPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTE 220 (487)
Q Consensus 148 ~~~~~lApma~~--td----~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~ 220 (487)
+.|+++||++.. .+ ....+.+.+.|. +++.+..-... .+++... .+.|...|+. ..|.+...+
T Consensus 72 ~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~-----~~~lSt~s~~s---lEeva~~--~~~~~wfQlY~~~dr~~~~~ 141 (364)
T PLN02535 72 SAPIMIAPTAMHKLAHPEGEIATARAAAACNT-----IMVLSFMASCT---VEEVASS--CNAVRFLQLYVYKRRDIAAQ 141 (364)
T ss_pred cccceechHHHhcccCcchHHHHHHHHHHcCC-----CeEecCcccCC---HHHHHhc--CCCCeEEEEeccCCHHHHHH
Confidence 679999998732 22 223345555664 33332211111 2333322 2458999998 467777788
Q ss_pred HHHhhCCc-CcEEEeecCCCcc-----eeeccC-------c------------ccc----c--cCChHHHHHHHHHHhhh
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQM-----VAKRGH-------Y------------GAY----L--QDDWPLLTNLVSSLRQA 269 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~-----i~~~gr-------~------------G~~----l--~~d~~~i~eiv~~v~~~ 269 (487)
..++++++ +.+|-+....|.. ..+++- . +.. . .-++....+-++.+++.
T Consensus 142 ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~ 221 (364)
T PLN02535 142 LVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFASETFDASLSWKDIEWLRSI 221 (364)
T ss_pred HHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHHhccCCCCCHHHHHHHHhc
Confidence 88888887 7777776666541 011000 0 000 0 00222233445667778
Q ss_pred ccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHH
Q psy7343 270 VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADV 347 (487)
Q Consensus 270 ~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da 347 (487)
++.||++|+ +.+. +.++.+.+.|+|+|.|.+....+.+ .+++..+.+.++++.+ ++|||+.|||++..|+
T Consensus 222 ~~~PvivKg-----V~~~-~dA~~a~~~GvD~I~vsn~GGr~~d--~~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv 293 (364)
T PLN02535 222 TNLPILIKG-----VLTR-EDAIKAVEVGVAGIIVSNHGARQLD--YSPATISVLEEVVQAVGGRVPVLLDGGVRRGTDV 293 (364)
T ss_pred cCCCEEEec-----CCCH-HHHHHHHhcCCCEEEEeCCCcCCCC--CChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHH
Confidence 899999994 3333 4478888999999999665433332 2344567888888766 7999999999999999
Q ss_pred HHHHHhcCCcEEEeccccccCccc
Q psy7343 348 EACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 348 ~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
.+.+ ..|||+|++||+++.....
T Consensus 294 ~KAL-alGA~aV~vGr~~l~~l~~ 316 (364)
T PLN02535 294 FKAL-ALGAQAVLVGRPVIYGLAA 316 (364)
T ss_pred HHHH-HcCCCEEEECHHHHhhhhh
Confidence 9999 7999999999998886553
No 89
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.07 E-value=5e-10 Score=112.94 Aligned_cols=209 Identities=17% Similarity=0.146 Sum_probs=126.7
Q ss_pred CCceEEecCCCC--CCHHHHHHHHHcCCCeEEccceeccccccCcH----------------------HHHHHhhh--CC
Q psy7343 78 SPRFILAPMVDA--SELPWRLLSRRYGSHLCYTPMVSAHQFIADKK----------------------LRQEILMS--TP 131 (487)
Q Consensus 78 ~~~~~LAPMag~--td~pFR~l~~~~Gadl~~TEMi~a~~l~~~~~----------------------~~~~~~~~--~~ 131 (487)
++++++| +|. ++..||.++...|++.++|++|+.+....... .-.+.+.. ..
T Consensus 10 ~nP~~~a--ag~~~~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~ 87 (296)
T cd04740 10 KNPVILA--SGTFGFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLPWLRE 87 (296)
T ss_pred CCCCEEC--CCCCCCHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHHHhhc
Confidence 5678888 666 88999999998889999999998875541111 11111111 23
Q ss_pred CCCceeeeeccccCCCCCccccccccCCCchHHHHHHHHhCCcc------ceeccccchhhhcChhHHHHHHhc--CCCC
Q psy7343 132 EDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHL------CYTPMVSAHQFIADKKLRQEILMS--TPED 203 (487)
Q Consensus 132 ~e~p~~vQl~~~~~~g~~~~~lApma~~td~~fr~i~~~~Ga~l------~~t~~v~~~~Ll~~~~~~~~~l~~--~~~~ 203 (487)
.+.|+++|+.+. +...+.. ......+.|++. ||.....+..+..+++...++++. ...+
T Consensus 88 ~~~p~ivsi~g~----~~~~~~~---------~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~ 154 (296)
T cd04740 88 FGTPVIASIAGS----TVEEFVE---------VAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATD 154 (296)
T ss_pred CCCcEEEEEecC----CHHHHHH---------HHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccC
Confidence 467999997422 1111110 011223334432 332222255677888887777752 2337
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeec---CCC-ccee----eccCccc-cccCChHHHHHHHHHHhhhccCc
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINI---GCP-QMVA----KRGHYGA-YLQDDWPLLTNLVSSLRQAVQVP 273 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~---GcP-~~i~----~~gr~G~-~l~~d~~~i~eiv~~v~~~~~iP 273 (487)
.||+||+.. +.++..+.++.++++ +|+|.+.- |.. ...+ ....+|+ .....+....+.++.+++.+++|
T Consensus 155 ~Pv~vKl~~-~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ip 233 (296)
T cd04740 155 VPVIVKLTP-NVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIP 233 (296)
T ss_pred CCEEEEeCC-CchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCC
Confidence 899999975 334677888877766 78887631 110 0000 0001111 11223344556667788888999
Q ss_pred EEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 274 VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 274 V~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
|++.+ ++.+..++.+.++ +|+|.|++ +|.
T Consensus 234 ii~~G----GI~~~~da~~~l~-~GAd~V~i-gra 262 (296)
T cd04740 234 IIGVG----GIASGEDALEFLM-AGASAVQV-GTA 262 (296)
T ss_pred EEEEC----CCCCHHHHHHHHH-cCCCEEEE-chh
Confidence 99998 7778888888885 89999999 774
No 90
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=99.05 E-value=6.5e-09 Score=106.73 Aligned_cols=214 Identities=17% Similarity=0.149 Sum_probs=135.6
Q ss_pred CceeeeeccccCCCCCccccccccC--CC----chHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCee
Q psy7343 134 RPLIIQRTIFPRLGSPRFILAPMVD--AS----ELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLI 207 (487)
Q Consensus 134 ~p~~vQl~~~~~~g~~~~~lApma~--~t----d~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~ 207 (487)
..+.+.+ ++.--+.|+++||++. .. +....+.+.+.|... +.++.-... .+++.... +.|..
T Consensus 52 ~d~~ttl--lG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~-----~lSt~ss~s---iEeva~a~--~~~~w 119 (361)
T cd04736 52 RDISASL--FGKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPF-----VLSTASNMS---IEDVARQA--DGDLW 119 (361)
T ss_pred CCCceeE--CCccccccccccHHHHHhccCCcHHHHHHHHHHHcCCcE-----EeeCCCCCC---HHHHHhhc--CCCeE
Confidence 3455553 3322367999999863 22 223345566666433 322111111 33333222 35789
Q ss_pred eeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcce-----eecc----------------------------------C
Q psy7343 208 IQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMV-----AKRG----------------------------------H 247 (487)
Q Consensus 208 Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i-----~~~g----------------------------------r 247 (487)
.|+.-.+.+...++.++++++ +++|=+....|..= .+++ .
T Consensus 120 fQLY~~~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~ 199 (361)
T cd04736 120 FQLYVVHRELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGMPQLAN 199 (361)
T ss_pred EEEEecCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhcccccccccc
Confidence 998866655566778888776 78777766654310 0000 0
Q ss_pred c----ccc-------c--cCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCC
Q psy7343 248 Y----GAY-------L--QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM 314 (487)
Q Consensus 248 ~----G~~-------l--~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~ 314 (487)
. +.. . .-|+....+.++.+++.++.||++|+ +. ..+-++.+.+.|+|+|.|++.+..|.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiKg-----V~-~~eda~~a~~~G~d~I~VSnhGGrql-- 271 (361)
T cd04736 200 FASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVKG-----IV-TAEDAKRCIELGADGVILSNHGGRQL-- 271 (361)
T ss_pred cccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEec-----CC-CHHHHHHHHHCCcCEEEECCCCcCCC--
Confidence 0 000 0 01222334567778888999999994 43 34556777789999999965544442
Q ss_pred CCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 315 NTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 315 ~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
....+..+.+.++++.+++|||+.|||++..|+.+.+ ..|||+|++||+++.-
T Consensus 272 d~~~~~~~~L~ei~~~~~~~vi~dGGIr~g~Dv~KAL-aLGA~aV~iGr~~l~~ 324 (361)
T cd04736 272 DDAIAPIEALAEIVAATYKPVLIDSGIRRGSDIVKAL-ALGANAVLLGRATLYG 324 (361)
T ss_pred cCCccHHHHHHHHHHHhCCeEEEeCCCCCHHHHHHHH-HcCCCEEEECHHHHHH
Confidence 2334568889999988899999999999999999999 7999999999987753
No 91
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=99.05 E-value=3.5e-09 Score=101.80 Aligned_cols=158 Identities=22% Similarity=0.253 Sum_probs=110.9
Q ss_pred cChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHh
Q psy7343 188 ADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLR 267 (487)
Q Consensus 188 ~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~ 267 (487)
++.+..+++++ ..++-||+.|. ..+...+.++++ . |+ ..++. |+....||+++.++++..-
T Consensus 62 ~n~~~i~~i~~----~~~~~vQvGGG-IRs~~~v~~ll~-~--------G~-~rVii----Gt~av~~p~~v~~~~~~~g 122 (241)
T COG0106 62 RNLEAIKEILE----ATDVPVQVGGG-IRSLEDVEALLD-A--------GV-ARVII----GTAAVKNPDLVKELCEEYG 122 (241)
T ss_pred ccHHHHHHHHH----hCCCCEEeeCC-cCCHHHHHHHHH-C--------CC-CEEEE----ecceecCHHHHHHHHHHcC
Confidence 34455566654 34677898862 122233333443 3 54 33332 4444679999999888765
Q ss_pred hhccCcEEEEeec------ccc---cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEc
Q psy7343 268 QAVQVPVSCKIRI------YQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN 338 (487)
Q Consensus 268 ~~~~iPV~vKiR~------~~d---~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~n 338 (487)
+++ -|.+-.|. ||. ..+..++++.+++.|+..+.+|.-.++.. .+ .+|++.++++.+.+++||+++
T Consensus 123 ~ri--vv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGt--l~-G~n~~l~~~l~~~~~ipviaS 197 (241)
T COG0106 123 DRI--VVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGT--LS-GPNVDLVKELAEAVDIPVIAS 197 (241)
T ss_pred CcE--EEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEEecccccc--cC-CCCHHHHHHHHHHhCcCEEEe
Confidence 432 22232222 232 23789999999999999999976655543 44 479999999999999999999
Q ss_pred CCCCCHHHHHHHHHhc-CCcEEEeccccccCcc
Q psy7343 339 GNIQCLADVEACLAQT-GVAGVMTAEGNLYNPA 370 (487)
Q Consensus 339 GgI~s~~da~~~l~~~-Gad~VmiGRa~l~~P~ 370 (487)
|||.|.+|++.+. +. |+++|.+||+++..-.
T Consensus 198 GGv~s~~Di~~l~-~~~G~~GvIvG~ALy~g~~ 229 (241)
T COG0106 198 GGVSSLDDIKALK-ELSGVEGVIVGRALYEGKF 229 (241)
T ss_pred cCcCCHHHHHHHH-hcCCCcEEEEehHHhcCCC
Confidence 9999999999988 56 9999999999988744
No 92
>PLN02979 glycolate oxidase
Probab=99.05 E-value=9.5e-09 Score=104.94 Aligned_cols=201 Identities=21% Similarity=0.247 Sum_probs=129.3
Q ss_pred CCccccccccCCC------chHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHH
Q psy7343 148 SPRFILAPMVDAS------ELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTE 220 (487)
Q Consensus 148 ~~~~~lApma~~t------d~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~ 220 (487)
+.|+++||++... +....+.+...|. +|+.+..-... .+++-.. .+.+...|+. ..|.+...+
T Consensus 69 ~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi-----~~~lSt~ss~s---lEeIa~a--~~~~~wfQLY~~~Dr~~~~~ 138 (366)
T PLN02979 69 SMPIMVAPTAMQKMAHPDGEYATARAASAAGT-----IMTLSSWATSS---VEEVAST--GPGIRFFQLYVYKNRNVVEQ 138 (366)
T ss_pred CccceecHHHHHhhCCCChHHHHHHHHHHcCC-----CeeeccCcCCC---HHHHHhc--cCCCeEEEEeecCCHHHHHH
Confidence 6799999987321 2233455556663 33332211111 3333322 2358999998 467777788
Q ss_pred HHHhhCCc-CcEEEeecCCCcc-e----eecc----------Cc-----c-------c----cc--cCChHHHHHHHHHH
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQM-V----AKRG----------HY-----G-------A----YL--QDDWPLLTNLVSSL 266 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~-i----~~~g----------r~-----G-------~----~l--~~d~~~i~eiv~~v 266 (487)
..++++++ +.+|-+....|.. . .+++ .. + . .. .-++....+-++.+
T Consensus 139 ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltW~dl~wl 218 (366)
T PLN02979 139 LVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWL 218 (366)
T ss_pred HHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHH
Confidence 88888876 7877776666542 0 0100 00 0 0 00 01122223446668
Q ss_pred hhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCH
Q psy7343 267 RQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCL 344 (487)
Q Consensus 267 ~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~ 344 (487)
++..++||++|+ +.+ .+-++.+.++|+|+|.|++....+. ...++..+.+.++++.+ ++||++.|||++.
T Consensus 219 r~~~~~PvivKg-----V~~-~~dA~~a~~~Gvd~I~VsnhGGrql--d~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G 290 (366)
T PLN02979 219 QTITKLPILVKG-----VLT-GEDARIAIQAGAAGIIVSNHGARQL--DYVPATISALEEVVKATQGRIPVFLDGGVRRG 290 (366)
T ss_pred HhccCCCEEeec-----CCC-HHHHHHHHhcCCCEEEECCCCcCCC--CCchhHHHHHHHHHHHhCCCCeEEEeCCcCcH
Confidence 888999999996 333 5667788899999999977655443 22345567888887765 5999999999999
Q ss_pred HHHHHHHHhcCCcEEEecccccc
Q psy7343 345 ADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 345 ~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
.|+.+.+ ..|||+|++||.++.
T Consensus 291 ~Di~KAL-ALGAdaV~iGrp~L~ 312 (366)
T PLN02979 291 TDVFKAL-ALGASGIFIGRPVVF 312 (366)
T ss_pred HHHHHHH-HcCCCEEEEcHHHHH
Confidence 9999999 799999999997664
No 93
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=99.04 E-value=1.8e-09 Score=106.67 Aligned_cols=117 Identities=20% Similarity=0.203 Sum_probs=90.0
Q ss_pred cccccCChHHHHHHHHHHh-hhc--cCc-----E------EEEeecccc--cccHHHHHHHHHHcCCcEEEEEccccCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSLR-QAV--QVP-----V------SCKIRIYQD--VNKTVEYARMLERAGCQLLAVHGRTVDQR 312 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~-~~~--~iP-----V------~vKiR~~~d--~~~~~e~a~~le~~G~d~I~VhgRt~~~~ 312 (487)
|.....+|+.+.++.+..- +++ ++. + .+++|...+ ..+..++++.+++.|++.|.+|++++..
T Consensus 103 gt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g- 181 (254)
T TIGR00735 103 NTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDG- 181 (254)
T ss_pred ChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCccc-
Confidence 4445568999998877652 222 111 1 244444332 3467899999999999999999987643
Q ss_pred CCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 313 GMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 313 g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
+.+.++|+.++++++.+++||+++|||++.+|+.++++..|+|+|++|+++...
T Consensus 182 --~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 182 --TKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR 235 (254)
T ss_pred --CCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC
Confidence 345579999999999999999999999999999999966669999999987654
No 94
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=99.01 E-value=1.2e-08 Score=105.03 Aligned_cols=201 Identities=20% Similarity=0.218 Sum_probs=128.6
Q ss_pred CCccccccccCCC------chHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHH
Q psy7343 148 SPRFILAPMVDAS------ELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTE 220 (487)
Q Consensus 148 ~~~~~lApma~~t------d~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~ 220 (487)
+.|+++||++... +....+.+.+.|... +.+..-... .+++... .+.|...|+. ..|.+...+
T Consensus 70 ~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~gi~~-----~lSt~ss~s---lEeva~~--~~~~~wfQlY~~~Dr~~~~~ 139 (367)
T PLN02493 70 SMPIMVAPTAMQKMAHPDGEYATARAASAAGTIM-----TLSSWATSS---VEEVAST--GPGIRFFQLYVYKNRNVVEQ 139 (367)
T ss_pred cccceechHHHHhhcCCchHHHHHHHHHHcCCCe-----eecCcccCC---HHHHHhc--CCCCcEEEEeecCCHHHHHH
Confidence 6799999987321 223345566666433 322211111 2333322 2357899988 467777788
Q ss_pred HHHhhCCc-CcEEEeecCCCcce-----eecc---------Cc-------------cc----cc--cCChHHHHHHHHHH
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQMV-----AKRG---------HY-------------GA----YL--QDDWPLLTNLVSSL 266 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~i-----~~~g---------r~-------------G~----~l--~~d~~~i~eiv~~v 266 (487)
..++++++ +.+|=+....|..- .+++ +. +. .. .-++....+-++.+
T Consensus 140 li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tW~di~wl 219 (367)
T PLN02493 140 LVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDVQWL 219 (367)
T ss_pred HHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHHHHhhcCCCCCCHHHHHHH
Confidence 88888876 77776666554320 0000 00 00 00 00111122335567
Q ss_pred hhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCH
Q psy7343 267 RQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCL 344 (487)
Q Consensus 267 ~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~ 344 (487)
++..++||++|+ +.+ .+-++.+.++|+|+|.|++....+.+ ..++..+.+.++++.+ ++||++.|||++.
T Consensus 220 r~~~~~PiivKg-----V~~-~~dA~~a~~~Gvd~I~VsnhGGrqld--~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G 291 (367)
T PLN02493 220 QTITKLPILVKG-----VLT-GEDARIAIQAGAAGIIVSNHGARQLD--YVPATISALEEVVKATQGRIPVFLDGGVRRG 291 (367)
T ss_pred HhccCCCEEeec-----CCC-HHHHHHHHHcCCCEEEECCCCCCCCC--CchhHHHHHHHHHHHhCCCCeEEEeCCcCcH
Confidence 888899999996 333 56677888999999999776555542 2345567888887765 5999999999999
Q ss_pred HHHHHHHHhcCCcEEEecccccc
Q psy7343 345 ADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 345 ~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
.|+.+.+ ..||++|+|||.++.
T Consensus 292 ~Dv~KAL-ALGA~aV~iGr~~l~ 313 (367)
T PLN02493 292 TDVFKAL-ALGASGIFIGRPVVF 313 (367)
T ss_pred HHHHHHH-HcCCCEEEEcHHHHH
Confidence 9999999 789999999997764
No 95
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=98.99 E-value=1.3e-08 Score=105.34 Aligned_cols=202 Identities=16% Similarity=0.169 Sum_probs=127.4
Q ss_pred CCccccccccCCC------chHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeecc-CCHHHHHH
Q psy7343 148 SPRFILAPMVDAS------ELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCG-NDSKNLTE 220 (487)
Q Consensus 148 ~~~~~lApma~~t------d~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g-~d~~~~~~ 220 (487)
+.|+++||++... +....+.+.+.|.-. +.+..-... .+++... ..+.|...|+.- .|.+...+
T Consensus 85 ~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~gi~~-----~lSt~ss~s---lEeIa~~-~~~~~~wfQlY~~~dr~~~~~ 155 (383)
T cd03332 85 AAPLLLAPIGVQELFHPDAELATARAAAELGVPY-----ILSTASSSS---IEDVAAA-AGDAPRWFQLYWPKDDDLTES 155 (383)
T ss_pred cccceechHHHHHhcCCcHHHHHHHHHHHcCCCe-----eecCCCCCC---HHHHHhh-cCCCCcEEEeeCCCCHHHHHH
Confidence 6799999987321 223345555666433 222110111 3333322 224588999884 57777778
Q ss_pred HHHhhCCc-CcEEEeecCCCcce-----ee-----------------cc----Cc--c-----c-------c---c---c
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQMV-----AK-----------------RG----HY--G-----A-------Y---L---Q 253 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~i-----~~-----------------~g----r~--G-----~-------~---l---~ 253 (487)
..++++++ +.+|-+....|..- .+ +. .+ + . . . .
T Consensus 156 ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (383)
T cd03332 156 LLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGEDPEAPPPMEAAVARFVSVF 235 (383)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCCCcccccccchhHHHHHHhc
Confidence 88888776 77776654443200 00 00 00 0 0 0 0 0
Q ss_pred CChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--
Q psy7343 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-- 331 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-- 331 (487)
-|+..-.+-++.+++.++.||++|+ +.+ .+-++.+.+.|+|+|.|++.+..+. -.+.+..+.+.++++.+
T Consensus 236 ~~~~~tW~~i~~lr~~~~~pvivKg-----V~~-~~dA~~a~~~G~d~I~vsnhGGr~~--d~~~~t~~~L~ei~~~~~~ 307 (383)
T cd03332 236 SGPSLTWEDLAFLREWTDLPIVLKG-----ILH-PDDARRAVEAGVDGVVVSNHGGRQV--DGSIAALDALPEIVEAVGD 307 (383)
T ss_pred CCCCCCHHHHHHHHHhcCCCEEEec-----CCC-HHHHHHHHHCCCCEEEEcCCCCcCC--CCCcCHHHHHHHHHHHhcC
Confidence 0122222445557777899999994 333 4556777889999999965443332 23556678888998877
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
++||++.|||++..|+.+.+ ..|||+|++||+++.
T Consensus 308 ~~~vi~dGGIr~G~Dv~KAL-aLGA~~v~iGr~~l~ 342 (383)
T cd03332 308 RLTVLFDSGVRTGADIMKAL-ALGAKAVLIGRPYAY 342 (383)
T ss_pred CCeEEEeCCcCcHHHHHHHH-HcCCCEEEEcHHHHH
Confidence 59999999999999999999 799999999998873
No 96
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.98 E-value=1e-08 Score=100.54 Aligned_cols=137 Identities=25% Similarity=0.348 Sum_probs=94.6
Q ss_pred CcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc---------
Q psy7343 239 PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV--------- 309 (487)
Q Consensus 239 P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~--------- 309 (487)
|..+...| |-+.+++|+.+.+ |++.+++||++|.|.+. ..-++.|+++|+|.|.-+-|.+
T Consensus 41 p~d~r~~g--gv~R~~~p~~I~~----I~~~V~iPVig~~kigh-----~~Ea~~L~~~GvDiIDeTe~lrPade~~~~~ 109 (287)
T TIGR00343 41 PADIRASG--GVARMSDPKMIKE----IMDAVSIPVMAKVRIGH-----FVEAQILEALGVDYIDESEVLTPADWTFHID 109 (287)
T ss_pred chhhHhcC--CeeecCCHHHHHH----HHHhCCCCEEEEeeccH-----HHHHHHHHHcCCCEEEccCCCCcHHHHHHHH
Confidence 55543333 5566788988777 55567999999998763 4456667777777774322110
Q ss_pred ------------------------------CCCCCCCCC-----------------------------------CCHHHH
Q psy7343 310 ------------------------------DQRGMNTGL-----------------------------------ASWEHI 324 (487)
Q Consensus 310 ------------------------------~~~g~~~g~-----------------------------------~~~~~i 324 (487)
....+|+|. ++++.+
T Consensus 110 K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elL 189 (287)
T TIGR00343 110 KKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELL 189 (287)
T ss_pred HHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHH
Confidence 000113332 467899
Q ss_pred HHHHhhCCCcEE--EcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCCCCcHHHHHHHHHHHHHcCh
Q psy7343 325 TAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPV 395 (487)
Q Consensus 325 ~~i~~~~~iPVi--~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~~~~~~~~l~~~~~~~~ 395 (487)
+++++..++||+ +.|||.|++|+..++ +.|||+|.+|+++...+. +.+..+.+.+.+..|.+
T Consensus 190 kei~~~~~iPVV~fAiGGI~TPedAa~~m-elGAdGVaVGSaI~ks~d--------P~~~akafv~ai~~~~~ 253 (287)
T TIGR00343 190 LEVLKLGKLPVVNFAAGGVATPADAALMM-QLGADGVFVGSGIFKSSN--------PEKLAKAIVEATTHYDN 253 (287)
T ss_pred HHHHHhCCCCEEEeccCCCCCHHHHHHHH-HcCCCEEEEhHHhhcCCC--------HHHHHHHHHHHHHHcCC
Confidence 999998899998 999999999999999 699999999999885322 12344566666666653
No 97
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=98.96 E-value=2.7e-08 Score=102.88 Aligned_cols=202 Identities=21% Similarity=0.205 Sum_probs=126.5
Q ss_pred CCccccccccC--CC----chHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHH
Q psy7343 148 SPRFILAPMVD--AS----ELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTE 220 (487)
Q Consensus 148 ~~~~~lApma~--~t----d~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~ 220 (487)
+.|+++||++. .. +....+.+.+.|. +|+.+..-... .+++... .+.|...|+. ..|.+...+
T Consensus 70 ~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g~-----~~~lSt~ss~s---lEeia~~--~~~~~wfQlY~~~Dr~~~~~ 139 (381)
T PRK11197 70 SMPVALAPVGLTGMYARRGEVQAARAADAKGI-----PFTLSTVSVCP---IEEVAPA--IKRPMWFQLYVLRDRGFMRN 139 (381)
T ss_pred ccchhhChHHHhhccCCchHHHHHHHHHHcCC-----CEEeeCCCcCC---HHHHHhc--cCCCeEEEEEecCCHHHHHH
Confidence 67999999873 22 2233455555664 33322211111 3333322 2458999987 457777788
Q ss_pred HHHhhCCc-CcEEEeecCCCcc--e---eecc------------------C-------------ccc--c----------
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQM--V---AKRG------------------H-------------YGA--Y---------- 251 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~--i---~~~g------------------r-------------~G~--~---------- 251 (487)
..++++++ +.+|-+...+|.. . .+++ + .+. +
T Consensus 140 li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~n~~~~~~~~~g~~~ 219 (381)
T PRK11197 140 ALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLED 219 (381)
T ss_pred HHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchhhhhhccccCCCcccccccccccccchhH
Confidence 88888876 8888777766531 0 0000 0 000 0
Q ss_pred ----c--cCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHH
Q psy7343 252 ----L--QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHIT 325 (487)
Q Consensus 252 ----l--~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~ 325 (487)
+ .-|+..-.+-++.+++.++.||++|+ + ...+-++.+.+.|+|+|.|++.+..+.. ...+..+.+.
T Consensus 220 ~~~~~~~~~~~~ltW~di~~lr~~~~~pvivKg-----V-~s~~dA~~a~~~Gvd~I~Vs~hGGr~~d--~~~~t~~~L~ 291 (381)
T PRK11197 220 YIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKG-----I-LDPEDARDAVRFGADGIVVSNHGGRQLD--GVLSSARALP 291 (381)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHhCCCCEEEEe-----c-CCHHHHHHHHhCCCCEEEECCCCCCCCC--CcccHHHHHH
Confidence 0 00001111225667888899999995 3 3455567788899999999654433321 1234467777
Q ss_pred HHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 326 AVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 326 ~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
++.+.+ ++||++.|||++..|+.+.+ ..|||+|++||.++.-
T Consensus 292 ~i~~a~~~~~~vi~dGGIr~g~Di~KAL-aLGA~~V~iGr~~l~~ 335 (381)
T PRK11197 292 AIADAVKGDITILADSGIRNGLDVVRMI-ALGADTVLLGRAFVYA 335 (381)
T ss_pred HHHHHhcCCCeEEeeCCcCcHHHHHHHH-HcCcCceeEhHHHHHH
Confidence 777765 69999999999999999999 7899999999977653
No 98
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.92 E-value=8e-08 Score=99.97 Aligned_cols=130 Identities=24% Similarity=0.291 Sum_probs=89.6
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYAR 292 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~ 292 (487)
.++.+.++..+++..+|.|-|..+. + +...+.++++.+++.+ +.+|++. ++ .+.+.++
T Consensus 151 ~~~~~~~v~~lv~aGvDvI~iD~a~-------g--------~~~~~~~~v~~ik~~~p~~~vi~g-----~V-~T~e~a~ 209 (404)
T PRK06843 151 DIDTIERVEELVKAHVDILVIDSAH-------G--------HSTRIIELVKKIKTKYPNLDLIAG-----NI-VTKEAAL 209 (404)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCC-------C--------CChhHHHHHHHHHhhCCCCcEEEE-----ec-CCHHHHH
Confidence 4454555555555546666554333 1 3455677888888876 6778774 33 4566677
Q ss_pred HHHHcCCcEEEEEccccC-------CCCCCCCCCCHHHHHHH---HhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 293 MLERAGCQLLAVHGRTVD-------QRGMNTGLASWEHITAV---RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 293 ~le~~G~d~I~VhgRt~~-------~~g~~~g~~~~~~i~~i---~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
.+.++|+|+|.+ |-+.. ..+ .|.+.+..+..+ .+..++|||+.|||+++.|+.+++ ..|||+||+|
T Consensus 210 ~l~~aGaD~I~v-G~g~Gs~c~tr~~~g--~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KAL-alGA~aVmvG 285 (404)
T PRK06843 210 DLISVGADCLKV-GIGPGSICTTRIVAG--VGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAI-AAGADSVMIG 285 (404)
T ss_pred HHHHcCCCEEEE-CCCCCcCCcceeecC--CCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHH-HcCCCEEEEc
Confidence 888899999988 53321 111 144566655444 445689999999999999999999 7999999999
Q ss_pred cccccC
Q psy7343 363 EGNLYN 368 (487)
Q Consensus 363 Ra~l~~ 368 (487)
+.+...
T Consensus 286 s~~agt 291 (404)
T PRK06843 286 NLFAGT 291 (404)
T ss_pred ceeeee
Confidence 998874
No 99
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=98.91 E-value=2.3e-09 Score=108.45 Aligned_cols=193 Identities=18% Similarity=0.101 Sum_probs=118.1
Q ss_pred CeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccccCCCchHHHHHHHHhCCccceeccc--
Q psy7343 104 HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMV-- 181 (487)
Q Consensus 104 dl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v-- 181 (487)
++..+||+++.++..-.+...+.....+ +.|+++|+.+. .+...+..-+..+.+..+..+..|+| ||....
T Consensus 71 g~~n~e~~s~~~~~~~~~~~~~~~~~~~-~~p~i~si~G~---~~~~~~~~~a~~~~~~gad~ielN~s---CP~~~~~~ 143 (299)
T cd02940 71 GFNNIELISEKPLEYWLKEIRELKKDFP-DKILIASIMCE---YNKEDWTELAKLVEEAGADALELNFS---CPHGMPER 143 (299)
T ss_pred cccCCccccccCHHHHHHHHHHHHhhCC-CCeEEEEecCC---CCHHHHHHHHHHHHhcCCCEEEEECC---CCCCCCCC
Confidence 6678999999988654444443333333 68999997321 01111111000111111222333455 665422
Q ss_pred -cchhhhcChhHHHHHHhc--CCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCc-----------ceeecc
Q psy7343 182 -SAHQFIADKKLRQEILMS--TPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQ-----------MVAKRG 246 (487)
Q Consensus 182 -~~~~Ll~~~~~~~~~l~~--~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~-----------~i~~~g 246 (487)
.+..+.++++...++++. ...+.||+|||+. +.++..+.++.++++ .|+|-+.-.-+. ....|+
T Consensus 144 ~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~-~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~ 222 (299)
T cd02940 144 GMGAAVGQDPELVEEICRWVREAVKIPVIAKLTP-NITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEG 222 (299)
T ss_pred CCchhhccCHHHHHHHHHHHHHhcCCCeEEECCC-CchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccC
Confidence 266788999998888862 3346899999985 334677888877666 777653211100 011334
Q ss_pred Ccccc---ccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccC
Q psy7343 247 HYGAY---LQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVD 310 (487)
Q Consensus 247 r~G~~---l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~ 310 (487)
+++.. ....+....+.+..+++.+ ++||++++ ++.+.+++.+.+. +|||+|+| +|...
T Consensus 223 ~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~G----GI~~~~da~~~l~-aGA~~V~i-~ta~~ 285 (299)
T cd02940 223 KTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIG----GIESWEDAAEFLL-LGASVVQV-CTAVM 285 (299)
T ss_pred CCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEEC----CCCCHHHHHHHHH-cCCChheE-ceeec
Confidence 33222 2445555667777788888 89999998 8899999999996 99999999 77543
No 100
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.91 E-value=6e-08 Score=97.99 Aligned_cols=185 Identities=15% Similarity=0.183 Sum_probs=112.5
Q ss_pred CCccccccccCCCc-hHHHHHHHHhCCccceeccccchhhhcChhHHHHHHh-c-C-CCCCCeeeeeccC-CHHHHHHHH
Q psy7343 148 SPRFILAPMVDASE-LPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM-S-T-PEDRPLIIQFCGN-DSKNLTEAA 222 (487)
Q Consensus 148 ~~~~~lApma~~td-~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~-~-~-~~~~Pv~Vqi~g~-d~~~~~~aa 222 (487)
+.|++.+||+++++ ..+-....|.|. + +++.+. ...++..++.++ . . ..+.|+.|++... +...+.+..
T Consensus 2 ~yPIiqgpM~~vs~~~~LaaAVS~AGg-L---G~la~~--~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l 75 (320)
T cd04743 2 RYPIVQGPMTRVSDVAEFAVAVAEGGG-L---PFIALA--LMRGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQL 75 (320)
T ss_pred CCCEECCCcCCCCCcHHHHHHHHhCCc-c---ccCCCC--CCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHH
Confidence 35888999999998 566666666652 1 122221 123444444443 2 2 2578999998542 112233344
Q ss_pred HhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcE
Q psy7343 223 KLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQL 301 (487)
Q Consensus 223 ~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~ 301 (487)
+.+.+. ...|-+..| +|..+ +.+++ .++.|+..+ ...+.++.+++.|+|.
T Consensus 76 ~vi~e~~v~~V~~~~G-----------------~P~~~----~~lk~-~Gi~v~~~v-------~s~~~A~~a~~~GaD~ 126 (320)
T cd04743 76 AVVRAIKPTFALIAGG-----------------RPDQA----RALEA-IGISTYLHV-------PSPGLLKQFLENGARK 126 (320)
T ss_pred HHHHhcCCcEEEEcCC-----------------ChHHH----HHHHH-CCCEEEEEe-------CCHHHHHHHHHcCCCE
Confidence 444333 222222222 34322 33443 388888776 4566678999999999
Q ss_pred EEEEccccCCCCCCCCC-CCHHHHHHHHhh----------CCCcEEEcCCCCCHHHHHHHHHhcCC--------cEEEec
Q psy7343 302 LAVHGRTVDQRGMNTGL-ASWEHITAVRKA----------LTIPVIANGNIQCLADVEACLAQTGV--------AGVMTA 362 (487)
Q Consensus 302 I~VhgRt~~~~g~~~g~-~~~~~i~~i~~~----------~~iPVi~nGgI~s~~da~~~l~~~Ga--------d~VmiG 362 (487)
|++.|.-. |+..|. ..+.++.++.+. .++|||+.|||.+...+..++ ..|+ +||++|
T Consensus 127 vVaqG~EA---GGH~G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaal-aLGA~~~~~Ga~~GV~mG 202 (320)
T cd04743 127 FIFEGREC---GGHVGPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVS-ALAAPLAERGAKVGVLMG 202 (320)
T ss_pred EEEecCcC---cCCCCCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHH-HcCCcccccccccEEEEc
Confidence 99977633 223332 122333333322 279999999999999998888 6777 899999
Q ss_pred cccccCccc
Q psy7343 363 EGNLYNPAL 371 (487)
Q Consensus 363 Ra~l~~P~l 371 (487)
+.++.-+.-
T Consensus 203 TrFl~t~Es 211 (320)
T cd04743 203 TAYLFTEEA 211 (320)
T ss_pred cHHhcchhh
Confidence 998887665
No 101
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.90 E-value=4.1e-09 Score=103.29 Aligned_cols=86 Identities=22% Similarity=0.322 Sum_probs=77.4
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+..++++.+++.|++.+.++.+++.. ..+..+++.++++++.+++||+++|||+|.+|+++++ ..|||+|++|++
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~---~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l-~~G~~~v~ig~~ 102 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASS---EGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLL-RAGADKVSINSA 102 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCccc---ccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HcCCceEEECch
Confidence 378999999999999999999987643 3456789999999999999999999999999999999 589999999999
Q ss_pred cccCcccccC
Q psy7343 365 NLYNPALFTG 374 (487)
Q Consensus 365 ~l~~P~lf~~ 374 (487)
++.||+++.+
T Consensus 103 ~~~~p~~~~~ 112 (243)
T cd04731 103 AVENPELIRE 112 (243)
T ss_pred hhhChHHHHH
Confidence 9999999764
No 102
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.90 E-value=3.9e-09 Score=104.17 Aligned_cols=86 Identities=21% Similarity=0.315 Sum_probs=78.0
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.++.++++.+++.|++.+.||.+++.+. ....+++.++++++.+++||+++|||+|.+|+++++ ..||++|++|++
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~---~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l-~~Ga~~Viigt~ 105 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASSE---GRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLL-RAGADKVSINSA 105 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccc---cCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHH-HcCCCEEEEChh
Confidence 3789999999999999999999987653 235789999999999999999999999999999999 589999999999
Q ss_pred cccCcccccC
Q psy7343 365 NLYNPALFTG 374 (487)
Q Consensus 365 ~l~~P~lf~~ 374 (487)
++.||++|.+
T Consensus 106 ~l~~p~~~~e 115 (253)
T PRK02083 106 AVANPELISE 115 (253)
T ss_pred HhhCcHHHHH
Confidence 9999999864
No 103
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.86 E-value=2.4e-07 Score=91.01 Aligned_cols=199 Identities=20% Similarity=0.210 Sum_probs=124.8
Q ss_pred CCCchHHHHHHHHhCC-ccce-----eccccch--hhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCcC
Q psy7343 158 DASELPWRLLSRRYGS-HLCY-----TPMVSAH--QFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHC 229 (487)
Q Consensus 158 ~~td~~fr~i~~~~Ga-~l~~-----t~~v~~~--~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~ 229 (487)
++++..-..++.+.|+ +++. +.+-... +-+.+++..+++.+. .+.||+-.+.-. .+.++-.+.+..+
T Consensus 14 ~v~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~--V~iPVIGi~K~~---~~~Ea~~L~eaGv 88 (283)
T cd04727 14 DVTNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDA--VSIPVMAKVRIG---HFVEAQILEALGV 88 (283)
T ss_pred EeCCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHh--CCCCeEEeeehh---HHHHHHHHHHcCC
Confidence 3455555678888885 3322 2222211 223456666665543 378999887621 1444444444446
Q ss_pred cEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEc--c
Q psy7343 230 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHG--R 307 (487)
Q Consensus 230 d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~Vhg--R 307 (487)
|.|| | +.+ .+| +.+++..+|...+.|+.+-+ +..+-+....+.|+|.|--++ -
T Consensus 89 DiID----a------T~r------~rP--~~~~~~~iK~~~~~l~MAD~-------stleEal~a~~~Gad~I~TTl~gy 143 (283)
T cd04727 89 DMID----E------SEV------LTP--ADEEHHIDKHKFKVPFVCGA-------RNLGEALRRISEGAAMIRTKGEAG 143 (283)
T ss_pred CEEe----c------cCC------CCc--HHHHHHHHHHHcCCcEEccC-------CCHHHHHHHHHCCCCEEEecCCCC
Confidence 6664 2 111 233 46777778877788888854 344455666778999885433 2
Q ss_pred ccC----------------CCCCC----------CCCCCHHHHHHHHhhCCCcEE--EcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 308 TVD----------------QRGMN----------TGLASWEHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 308 t~~----------------~~g~~----------~g~~~~~~i~~i~~~~~iPVi--~nGgI~s~~da~~~l~~~Gad~V 359 (487)
|.. .-.+| ...++|+.++++++..++||+ +.|||.|++++.+++ +.|||+|
T Consensus 144 T~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~-e~GAdgV 222 (283)
T cd04727 144 TGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALMM-QLGADGV 222 (283)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHH-HcCCCEE
Confidence 221 00001 123689999999999999997 999999999999999 6999999
Q ss_pred EeccccccCcccccCCCCCcHHHHHHHHHHHHHcCh
Q psy7343 360 MTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPV 395 (487)
Q Consensus 360 miGRa~l~~P~lf~~~~~~~~~~~~~~l~~~~~~~~ 395 (487)
++|++++..+.. .+..+++.+.+..|..
T Consensus 223 aVGSAI~~a~dP--------~~~tk~f~~ai~~~~~ 250 (283)
T cd04727 223 FVGSGIFKSENP--------EKRARAIVEAVTHYDD 250 (283)
T ss_pred EEcHHhhcCCCH--------HHHHHHHHHHHHhcCC
Confidence 999998854322 2345566666666653
No 104
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=98.79 E-value=9.7e-08 Score=97.57 Aligned_cols=194 Identities=21% Similarity=0.255 Sum_probs=112.2
Q ss_pred CCccccccccCCCchHHH-HHHHHhCCccceeccccchhhhcChhHHHHHH--hcCCCCC--CeeeeeccCCHHHHHHHH
Q psy7343 148 SPRFILAPMVDASELPWR-LLSRRYGSHLCYTPMVSAHQFIADKKLRQEIL--MSTPEDR--PLIIQFCGNDSKNLTEAA 222 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr-~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l--~~~~~~~--Pv~Vqi~g~d~~~~~~aa 222 (487)
+-|++.+||-.+|+..+. .+++..|.+++.-.+.. ......-++.++.. .....+. .|.+-+.. .++++..+.
T Consensus 37 ~iPivsa~MDtVte~~mAiama~~Gglgvih~~~~~-e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~-~~~~~er~~ 114 (352)
T PF00478_consen 37 KIPIVSAPMDTVTESEMAIAMARLGGLGVIHRNMSI-EEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGT-RDDDFERAE 114 (352)
T ss_dssp SSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESSSCH-HHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEES-STCHHHHHH
T ss_pred cCceEecCccccchHHHHHHHHHhcCCceecCCCCH-HHHHHHHhhhccccccccccccccceEEEEecC-CHHHHHHHH
Confidence 679999999999998876 45555554554432211 00011111111111 0111222 34444443 233455555
Q ss_pred HhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc-CcEEEEeecccccccHHHHHHHHHHcCCcE
Q psy7343 223 KLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEYARMLERAGCQL 301 (487)
Q Consensus 223 ~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~a~~le~~G~d~ 301 (487)
.+++...|.|-|... || +-+.+.+.++.+++..+ +||++- ++ -+.+.++.|.++|+|+
T Consensus 115 ~L~~agvD~ivID~a-------~g--------~s~~~~~~ik~ik~~~~~~~viaG-----NV-~T~e~a~~L~~aGad~ 173 (352)
T PF00478_consen 115 ALVEAGVDVIVIDSA-------HG--------HSEHVIDMIKKIKKKFPDVPVIAG-----NV-VTYEGAKDLIDAGADA 173 (352)
T ss_dssp HHHHTT-SEEEEE-S-------ST--------TSHHHHHHHHHHHHHSTTSEEEEE-----EE--SHHHHHHHHHTT-SE
T ss_pred HHHHcCCCEEEcccc-------Cc--------cHHHHHHHHHHHHHhCCCceEEec-----cc-CCHHHHHHHHHcCCCE
Confidence 555555666655422 22 34556677888888875 888763 33 4566777889999999
Q ss_pred EEEEccc-------cCCCCCCCCCCCHHHHHHHHh---hCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 302 LAVHGRT-------VDQRGMNTGLASWEHITAVRK---ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 302 I~VhgRt-------~~~~g~~~g~~~~~~i~~i~~---~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
|.| |-+ +...| -|.+....+.++.+ ..++|||+.|||++.-|+.+.| ..|||.||+|+.|-.-
T Consensus 174 vkV-GiGpGsiCtTr~v~G--vG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAl-a~GAd~VMlG~llAgt 246 (352)
T PF00478_consen 174 VKV-GIGPGSICTTREVTG--VGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKAL-AAGADAVMLGSLLAGT 246 (352)
T ss_dssp EEE-SSSSSTTBHHHHHHS--BSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHH-HTT-SEEEESTTTTTB
T ss_pred EEE-eccCCcccccccccc--cCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeee-eecccceeechhhccC
Confidence 999 532 22221 13445555555544 4589999999999999999999 7999999999865544
No 105
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=98.78 E-value=6.1e-07 Score=90.37 Aligned_cols=185 Identities=15% Similarity=0.142 Sum_probs=118.1
Q ss_pred CCccccccccCCCchHHHHHHHHhC-CccceeccccchhhhcChhHHHHHHhc-CC-CCCCeeeeeccCCHHHHHHHHHh
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYG-SHLCYTPMVSAHQFIADKKLRQEILMS-TP-EDRPLIIQFCGNDSKNLTEAAKL 224 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~G-a~l~~t~~v~~~~Ll~~~~~~~~~l~~-~~-~~~Pv~Vqi~g~d~~~~~~aa~~ 224 (487)
.-|++.|.|..+++......-.+.| ..... . ..+.+...+.++. .+ ...-+.|.+ |-.++++..+..+
T Consensus 45 ~iPii~AnMdtv~~~~mA~~la~~g~~~~iH-k-------~~~~e~~~~~v~~~~~~~~~~~~vsv-G~~~~d~er~~~L 115 (343)
T TIGR01305 45 GVPIIAANMDTVGTFEMAAALSQHSIFTAIH-K-------HYSVDEWKAFATNSSPDCLQNVAVSS-GSSDNDLEKMTSI 115 (343)
T ss_pred CCceEecCCCcccCHHHHHHHHHCCCeEEEe-e-------CCCHHHHHHHHHhhcccccceEEEEe-ccCHHHHHHHHHH
Confidence 5689999999999887764444444 12211 1 1123333334432 11 122344433 3356677777777
Q ss_pred hCCc--CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEE
Q psy7343 225 AEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLL 302 (487)
Q Consensus 225 ~~~~--~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I 302 (487)
++.. .|.|-|... || +-+.+.+.++.+|+..+-+.++++ ++.+ .+-++.+.++|+|+|
T Consensus 116 ~~a~~~~d~iviD~A-------hG--------hs~~~i~~ik~ir~~~p~~~viaG----NV~T-~e~a~~Li~aGAD~i 175 (343)
T TIGR01305 116 LEAVPQLKFICLDVA-------NG--------YSEHFVEFVKLVREAFPEHTIMAG----NVVT-GEMVEELILSGADIV 175 (343)
T ss_pred HhcCCCCCEEEEECC-------CC--------cHHHHHHHHHHHHhhCCCCeEEEe----cccC-HHHHHHHHHcCCCEE
Confidence 7653 566555432 23 356677888889988866777776 5544 445567778999999
Q ss_pred EEE-----ccccCCCCCCCCCCCHHHHHHHHhhC---CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 303 AVH-----GRTVDQRGMNTGLASWEHITAVRKAL---TIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 303 ~Vh-----gRt~~~~g~~~g~~~~~~i~~i~~~~---~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
.|. .-+..+.. -.|.+.+..+.++.+.. ++|||+-|||++.-|+.+.+ ..|||+||+|.
T Consensus 176 kVgiGpGSicttR~~~-Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KAL-A~GAd~VMlG~ 242 (343)
T TIGR01305 176 KVGIGPGSVCTTRTKT-GVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAF-GAGADFVMLGG 242 (343)
T ss_pred EEcccCCCcccCceeC-CCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHH-HcCCCEEEECH
Confidence 872 01111211 12335677777776654 78999999999999999999 79999999994
No 106
>KOG2333|consensus
Probab=98.76 E-value=2.5e-08 Score=102.73 Aligned_cols=237 Identities=14% Similarity=0.199 Sum_probs=149.3
Q ss_pred HHHHHhCCccceeccc----cchhhhcChhHHHHHHhc---CCCCCCeeeeeccCC---HHHHHHHHHhhC-CcCcEEEe
Q psy7343 166 LLSRRYGSHLCYTPMV----SAHQFIADKKLRQEILMS---TPEDRPLIIQFCGND---SKNLTEAAKLAE-PHCDGIDI 234 (487)
Q Consensus 166 ~i~~~~Ga~l~~t~~v----~~~~Ll~~~~~~~~~l~~---~~~~~Pv~Vqi~g~d---~~~~~~aa~~~~-~~~d~Idi 234 (487)
.|+.|+| ||-.+| .|++|+.++.+...+++. .....|++||||... .....++...+. +.
T Consensus 349 FIDlN~G---CPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~new------ 419 (614)
T KOG2333|consen 349 FIDLNMG---CPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEW------ 419 (614)
T ss_pred eeeccCC---CChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccCchhHHHHHHHHhhcc------
Confidence 3677889 555554 489999999988888863 344679999999422 223334444444 44
Q ss_pred ecCCCcceeeccCccccc---cCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcC-CcEEEEEccccC
Q psy7343 235 NIGCPQMVAKRGHYGAYL---QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAG-CQLLAVHGRTVD 310 (487)
Q Consensus 235 N~GcP~~i~~~gr~G~~l---~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G-~d~I~VhgRt~~ 310 (487)
| +..++.|||...+. .+||+.+.++.++++. .+||++|+ |+-+++|+.+.+...+ ++.||| ||++.
T Consensus 420 --g-~savTlHGRSRqQRYTK~AnWdYi~e~a~~ak~--~l~liGNG----Di~S~eDw~~~~~~~p~v~svMI-aRGAL 489 (614)
T KOG2333|consen 420 --G-ASAVTLHGRSRQQRYTKSANWDYIEECADKAKS--ALPLIGNG----DILSWEDWYERLNQNPNVDSVMI-ARGAL 489 (614)
T ss_pred --C-cceEEecCchhhhhhhcccChHHHHHHHHhccc--CceeEecC----ccccHHHHHHHhhcCCCcceEEe-ecccc
Confidence 4 36788899877764 6899999999887654 38999998 9999999999999998 999999 99877
Q ss_pred CCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHH--HHHHhcCCcEEEeccccccCcccccCCCCCcHHHHHHHHH
Q psy7343 311 QRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVE--ACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLD 388 (487)
Q Consensus 311 ~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~--~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~~~~~~~~l~ 388 (487)
-++| .+.+|++.-.. ||+|.+-.. +-+-+.|.+....-+. + -......+.+++.
T Consensus 490 IKPW--------IFtEIkeqq~w------D~sSteRldiL~df~nyGLeHWGSDt~---------G-VetTRRFlLE~lS 545 (614)
T KOG2333|consen 490 IKPW--------IFTEIKEQQHW------DISSTERLDILKDFCNYGLEHWGSDTK---------G-VETTRRFLLEFLS 545 (614)
T ss_pred ccch--------HhhhhhhhhcC------CccchHHHHHHHHHHhhhhhhcCCccc---------c-HHHHHHHHHHHHH
Confidence 6655 34556554322 566666432 2221345444321110 0 0122455667777
Q ss_pred HHHHc-ChhHH-HHHHHHHHHhHhhcCCCCcHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhccccC
Q psy7343 389 LVAQY-PVRLQ-YARGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFIDYHEGRK 452 (487)
Q Consensus 389 ~~~~~-~~~~~-~~r~~l~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (487)
+..+| +.++. .++..+.+ .. ...-+++....|..+.+..++.++-+.+ +.++|||..
T Consensus 546 F~~RYiPv~l~e~lpqriN~--RP--p~y~gRdelETLm~S~ka~DWvkiSe~l---LGpvPegFt 604 (614)
T KOG2333|consen 546 FFHRYIPVGLLEVLPQRIND--RP--PLYTGRDELETLMSSQKAADWVKISEML---LGPVPEGFT 604 (614)
T ss_pred HHHhhchHHHhhcCchhhcc--CC--ccccchhHHHHHHhcccchhHHHHHHHH---cCCCCCCce
Confidence 77777 32222 22333321 10 0112345556667777777777666554 477788744
No 107
>KOG0134|consensus
Probab=98.75 E-value=5.9e-08 Score=99.30 Aligned_cols=161 Identities=17% Similarity=0.196 Sum_probs=117.4
Q ss_pred HHHHHHHHHhhCCc-CcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEEee---
Q psy7343 215 SKNLTEAAKLAEPH-CDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIR--- 279 (487)
Q Consensus 215 ~~~~~~aa~~~~~~-~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR--- 279 (487)
.+.++.|++.+.++ ||+||||..+ |..+.+.+.||+.+.++.+++.|++++|++.++ .....-.+
T Consensus 173 ~Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~ 252 (400)
T KOG0134|consen 173 VDRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTNE 252 (400)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccchhhhhhccCCCCCcccccCcchhhhhhhhHHHHHHHHHhhccccceEEecCchh
Confidence 35667788888565 9999999765 667889999999999999999999999999873 22222222
Q ss_pred ---cccccccHHHHHHHHHHcCCcEEEEEccccCCC-----CCCCCCC----CHHHHHHHHhhCCCcEE-EcCCCCCHHH
Q psy7343 280 ---IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR-----GMNTGLA----SWEHITAVRKALTIPVI-ANGNIQCLAD 346 (487)
Q Consensus 280 ---~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~-----g~~~g~~----~~~~i~~i~~~~~iPVi-~nGgI~s~~d 346 (487)
.+++.++....+..+++.|+|.+-+.|.+.... ...+... ..+....++...+.+++ ++|+.++.+.
T Consensus 253 fq~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~~~~~f~e~~r~~~kgt~v~a~g~~~t~~~ 332 (400)
T KOG0134|consen 253 FQDIGITIDDAIKMCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREAFFVEFAETIRPVFKGTVVYAGGGGRTREA 332 (400)
T ss_pred hhhccccccchHHHHHHHHhcccchhhccCchhhhhhhhccccccccccccchhhhhhHHHHHhcCcEEEecCCccCHHH
Confidence 124556778888999999999665544332210 0011111 23556667777778877 5678999999
Q ss_pred HHHHHHhcCCcEEEeccccccCcccccCC
Q psy7343 347 VEACLAQTGVAGVMTAEGNLYNPALFTGQ 375 (487)
Q Consensus 347 a~~~l~~~Gad~VmiGRa~l~~P~lf~~~ 375 (487)
+.+.++....|+|..||.+++||+|..++
T Consensus 333 ~~eav~~~~T~~ig~GR~f~anPDLp~rl 361 (400)
T KOG0134|consen 333 MVEAVKSGRTDLIGYGRPFLANPDLPKRL 361 (400)
T ss_pred HHHHHhcCCceeEEecchhccCCchhHHH
Confidence 99999777788999999999999997643
No 108
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.73 E-value=6.8e-07 Score=90.01 Aligned_cols=187 Identities=14% Similarity=0.152 Sum_probs=119.8
Q ss_pred CCccccccccCCCchHHHHHHHHhC-CccceeccccchhhhcChhHHHHHHhcCCC--CCCeeeeeccCCHHHHHHHHHh
Q psy7343 148 SPRFILAPMVDASELPWRLLSRRYG-SHLCYTPMVSAHQFIADKKLRQEILMSTPE--DRPLIIQFCGNDSKNLTEAAKL 224 (487)
Q Consensus 148 ~~~~~lApma~~td~~fr~i~~~~G-a~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~--~~Pv~Vqi~g~d~~~~~~aa~~ 224 (487)
.-|++.|+|..+++......-.+.| -.... . ..+.+...+.++.... ..-+.|.+ |-.++++..+..+
T Consensus 46 giPii~AnMdTV~~~~mA~~la~~g~~~~iH-k-------~~~~e~~~~fv~~~~~~~~~~~~vav-G~~~~d~er~~~L 116 (346)
T PRK05096 46 GVPIIAANMDTVGTFEMAKALASFDILTAVH-K-------HYSVEEWAAFVNNSSADVLKHVMVST-GTSDADFEKTKQI 116 (346)
T ss_pred CCceEecCCCccccHHHHHHHHHCCCeEEEe-c-------CCCHHHHHHHHHhccccccceEEEEe-cCCHHHHHHHHHH
Confidence 4689999999999887664444444 12211 0 0123333344432221 12344433 3456777777777
Q ss_pred hCC--cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcE
Q psy7343 225 AEP--HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQL 301 (487)
Q Consensus 225 ~~~--~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~ 301 (487)
++. ..|.|-|... || +-+.+.++++.+|+.. +++|++- ++. +.+.++.|.++|+|+
T Consensus 117 ~~~~~g~D~iviD~A-------hG--------hs~~~i~~ik~ik~~~P~~~vIaG-----NV~-T~e~a~~Li~aGAD~ 175 (346)
T PRK05096 117 LALSPALNFICIDVA-------NG--------YSEHFVQFVAKAREAWPDKTICAG-----NVV-TGEMVEELILSGADI 175 (346)
T ss_pred HhcCCCCCEEEEECC-------CC--------cHHHHHHHHHHHHHhCCCCcEEEe-----ccc-CHHHHHHHHHcCCCE
Confidence 774 3666655433 23 3566778888898876 5666653 443 455778899999999
Q ss_pred EEEEcc-------ccCCCCCCCCCCCHHHHHHHHh---hCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 302 LAVHGR-------TVDQRGMNTGLASWEHITAVRK---ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 302 I~VhgR-------t~~~~g~~~g~~~~~~i~~i~~---~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
|-| |- |+...| -|.+.+..+.++.+ ..++|||+.|||++.-|+.+.+ ..|||.||+|+-+-..
T Consensus 176 vKV-GIGpGSiCtTr~vtG--vG~PQltAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAl-aaGAd~VMlGsllAGt 248 (346)
T PRK05096 176 VKV-GIGPGSVCTTRVKTG--VGYPQLSAVIECADAAHGLGGQIVSDGGCTVPGDVAKAF-GGGADFVMLGGMLAGH 248 (346)
T ss_pred EEE-cccCCccccCccccc--cChhHHHHHHHHHHHHHHcCCCEEecCCcccccHHHHHH-HcCCCEEEeChhhcCc
Confidence 987 42 222221 23455666665544 4589999999999999999999 7999999999865554
No 109
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.73 E-value=3.1e-08 Score=97.82 Aligned_cols=86 Identities=21% Similarity=0.326 Sum_probs=77.1
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.++.++++.+++.|++.++++...+... .+..+++.++++++.+++||+++|||+|.+|+++++ ..||+.|++|++
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~---~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~-~~Ga~~vivgt~ 105 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSE---GRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLL-RAGADKVSINTA 105 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc---cChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH-HcCCCEEEEChh
Confidence 3789999999999999999988766532 345789999999999999999999999999999999 689999999999
Q ss_pred cccCcccccC
Q psy7343 365 NLYNPALFTG 374 (487)
Q Consensus 365 ~l~~P~lf~~ 374 (487)
++.||+++.+
T Consensus 106 ~~~~p~~~~~ 115 (254)
T TIGR00735 106 AVKNPELIYE 115 (254)
T ss_pred HhhChHHHHH
Confidence 9999998764
No 110
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.72 E-value=8.5e-08 Score=92.57 Aligned_cols=103 Identities=24% Similarity=0.349 Sum_probs=79.4
Q ss_pred HHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEE--EccccCCCCCCCCCCCHHHHHHHHhhCCCcE
Q psy7343 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV--HGRTVDQRGMNTGLASWEHITAVRKALTIPV 335 (487)
Q Consensus 258 ~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V--hgRt~~~~g~~~g~~~~~~i~~i~~~~~iPV 335 (487)
.+.++++.+++..++++++.. ...+.+..+.+.|+|.+.+ +|++.... .....+++.++++++.+++||
T Consensus 110 ~~~~~i~~~~~~g~~~iiv~v-------~t~~ea~~a~~~G~d~i~~~~~g~t~~~~--~~~~~~~~~l~~i~~~~~ipv 180 (219)
T cd04729 110 TLAELIKRIHEEYNCLLMADI-------STLEEALNAAKLGFDIIGTTLSGYTEETA--KTEDPDFELLKELRKALGIPV 180 (219)
T ss_pred CHHHHHHHHHHHhCCeEEEEC-------CCHHHHHHHHHcCCCEEEccCcccccccc--CCCCCCHHHHHHHHHhcCCCE
Confidence 566777777766568888865 2334457788899999976 45544332 233457899999999999999
Q ss_pred EEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 336 IANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 336 i~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
+++|||.+++++.+++ ..|||+|++|++++...+
T Consensus 181 ia~GGI~~~~~~~~~l-~~GadgV~vGsal~~~~~ 214 (219)
T cd04729 181 IAEGRINSPEQAAKAL-ELGADAVVVGSAITRPEH 214 (219)
T ss_pred EEeCCCCCHHHHHHHH-HCCCCEEEEchHHhChHh
Confidence 9999999999999999 589999999999776544
No 111
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.72 E-value=1.5e-07 Score=92.54 Aligned_cols=148 Identities=16% Similarity=0.158 Sum_probs=104.4
Q ss_pred CCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHH-----HHHHHHhhhccCcEE--EEeecccccc
Q psy7343 213 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT-----NLVSSLRQAVQVPVS--CKIRIYQDVN 285 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~-----eiv~~v~~~~~iPV~--vKiR~~~d~~ 285 (487)
.+.+++.++++.+++.+|.||||+-||....- |.......+... ++++++++.+++|+. ++. ..-..
T Consensus 15 p~~~~~~~~~~~l~~~ad~iElgip~sdp~ad----G~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~--n~~~~ 88 (244)
T PRK13125 15 PNVESFKEFIIGLVELVDILELGIPPKYPKYD----GPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYL--EDYVD 88 (244)
T ss_pred CCHHHHHHHHHHHHhhCCEEEECCCCCCCCCC----CHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEec--chhhh
Confidence 47889999998876669999999999654221 333333444444 788999988899985 333 21234
Q ss_pred cHHHHHHHHHHcCCcEEEEEcc-----------------------------ccC--------C---------CCCCCCC-
Q psy7343 286 KTVEYARMLERAGCQLLAVHGR-----------------------------TVD--------Q---------RGMNTGL- 318 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgR-----------------------------t~~--------~---------~g~~~g~- 318 (487)
+..++++.+.++|+|+|++|.- |.. . .++..+.
T Consensus 89 ~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~~~ 168 (244)
T PRK13125 89 SLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGVPL 168 (244)
T ss_pred CHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCCCc
Confidence 6788888889999999998731 000 0 0111111
Q ss_pred -CC-HHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 319 -AS-WEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 319 -~~-~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
.+ .+.++++++.. +.||+..|||+|.+++.+++ +.|||++.+|++++.
T Consensus 169 ~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~-~~gaD~vvvGSai~~ 219 (244)
T PRK13125 169 PVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDAL-SAGADGVVVGTAFIE 219 (244)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHH-HcCCCEEEECHHHHH
Confidence 11 25777888877 58999999999999999998 689999999998774
No 112
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.67 E-value=6.7e-08 Score=93.96 Aligned_cols=86 Identities=31% Similarity=0.420 Sum_probs=76.0
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+..++++.+++.|+|.+.|+.+++... ....+++.++++++.+++||+++|||++.+++++++ +.|||.|++|++
T Consensus 29 ~dp~~~a~~~~~~g~d~l~v~dl~~~~~---~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~-~~Gad~vvigs~ 104 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGAKG---GEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLL-DLGVSRVIIGTA 104 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCcccc---CCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHH-HcCCCEEEECch
Confidence 4789999999999999999998765321 245689999999999999999999999999999999 689999999999
Q ss_pred cccCcccccC
Q psy7343 365 NLYNPALFTG 374 (487)
Q Consensus 365 ~l~~P~lf~~ 374 (487)
.+.||+++.+
T Consensus 105 ~l~dp~~~~~ 114 (234)
T cd04732 105 AVKNPELVKE 114 (234)
T ss_pred HHhChHHHHH
Confidence 9999998764
No 113
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.66 E-value=1.4e-07 Score=91.10 Aligned_cols=103 Identities=17% Similarity=0.216 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEE
Q psy7343 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI 336 (487)
Q Consensus 257 ~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi 336 (487)
+.+.++++.+++..++++++.. ...+.++.+.+.|+|.|.++.+............+++.++++++.+++||+
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v-------~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvi 177 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADC-------STLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVI 177 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeC-------CCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEE
Confidence 4456677777653477887754 233445788899999998743221111112234568999999999999999
Q ss_pred EcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 337 ~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
+.|||.|++++.+++ +.|||+|++|++++.
T Consensus 178 a~GGI~t~~~~~~~l-~~GadgV~iGsai~~ 207 (221)
T PRK01130 178 AEGRINTPEQAKKAL-ELGAHAVVVGGAITR 207 (221)
T ss_pred EECCCCCHHHHHHHH-HCCCCEEEEchHhcC
Confidence 999999999999999 689999999998764
No 114
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.66 E-value=6.9e-07 Score=93.35 Aligned_cols=80 Identities=24% Similarity=0.194 Sum_probs=58.0
Q ss_pred HHHHHHHHHHcC-CcEEEEEccccCCCCCCCCC-CCH---HHHHHHHhhC--------CCcEEEcCCCCCHHHHHHHHHh
Q psy7343 287 TVEYARMLERAG-CQLLAVHGRTVDQRGMNTGL-ASW---EHITAVRKAL--------TIPVIANGNIQCLADVEACLAQ 353 (487)
Q Consensus 287 ~~e~a~~le~~G-~d~I~VhgRt~~~~g~~~g~-~~~---~~i~~i~~~~--------~iPVi~nGgI~s~~da~~~l~~ 353 (487)
+.+.++.+++.| +|.|++. . +.|+..+. ..+ ..+.++++.+ ++||++.|||.|++++..++ .
T Consensus 165 t~~eA~~A~~~g~aD~Ivvq---~-EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~-a 239 (418)
T cd04742 165 TEEQAELARRVPVADDITVE---A-DSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAF-A 239 (418)
T ss_pred CHHHHHHHHhCCCCCEEEEc---c-cCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHH-H
Confidence 345567777778 6999983 2 22334332 223 4444555444 69999999999999999999 7
Q ss_pred cCCcEEEeccccccCccc
Q psy7343 354 TGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 354 ~Gad~VmiGRa~l~~P~l 371 (487)
.|||+|++|+.++..+.-
T Consensus 240 lGAd~V~~GT~flat~Ea 257 (418)
T cd04742 240 LGADFIVTGSINQCTVEA 257 (418)
T ss_pred cCCcEEeeccHHHhCccc
Confidence 899999999999987653
No 115
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.66 E-value=4.2e-07 Score=87.67 Aligned_cols=141 Identities=20% Similarity=0.229 Sum_probs=96.7
Q ss_pred eeeeecc-CCHHHHHHHHHhhCCcC--cEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEE-EEeecc
Q psy7343 206 LIIQFCG-NDSKNLTEAAKLAEPHC--DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVS-CKIRIY 281 (487)
Q Consensus 206 v~Vqi~g-~d~~~~~~aa~~~~~~~--d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~-vKiR~~ 281 (487)
+-.+..| .+.++.+..|+++.+.+ +.| ++-+.+. -..|+.|+....+-.+.+.+. ++-|. +-
T Consensus 65 ~lpNTaG~~ta~eAv~~a~lare~~~~~~i--------KlEVi~d-~~~Llpd~~~tv~aa~~L~~~-Gf~vlpyc---- 130 (248)
T cd04728 65 LLPNTAGCRTAEEAVRTARLAREALGTDWI--------KLEVIGD-DKTLLPDPIETLKAAEILVKE-GFTVLPYC---- 130 (248)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHhCCCeE--------EEEEecC-ccccccCHHHHHHHHHHHHHC-CCEEEEEe----
Confidence 3344444 57788888888887761 222 2333332 234555655544443333221 33333 21
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
.+-...++.+++.|++.||.+|...... .|..+.+.++.+++..++|||+.|||.+++|+.+++ +.|||+|++
T Consensus 131 ---~dd~~~ar~l~~~G~~~vmPlg~pIGsg---~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~Am-elGAdgVlV 203 (248)
T cd04728 131 ---TDDPVLAKRLEDAGCAAVMPLGSPIGSG---QGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAM-ELGADAVLL 203 (248)
T ss_pred ---CCCHHHHHHHHHcCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHH-HcCCCEEEE
Confidence 1346778899999999999877654432 356679999999998999999999999999999999 699999999
Q ss_pred cccccc
Q psy7343 362 AEGNLY 367 (487)
Q Consensus 362 GRa~l~ 367 (487)
|+|+..
T Consensus 204 ~SAIt~ 209 (248)
T cd04728 204 NTAIAK 209 (248)
T ss_pred ChHhcC
Confidence 999874
No 116
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=98.65 E-value=2.1e-07 Score=97.44 Aligned_cols=111 Identities=23% Similarity=0.301 Sum_probs=83.8
Q ss_pred CChHHHHHHHHHHhhhcc-CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCC-C-----CCCCCCCHHHHHH
Q psy7343 254 DDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR-G-----MNTGLASWEHITA 326 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~-g-----~~~g~~~~~~i~~ 326 (487)
.+++.+.++++.+++..+ +||++|+-.+ ....++++.++..|+|+|+|.|...... . ...|.+....+.+
T Consensus 196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~---~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~ 272 (392)
T cd02808 196 YSIEDLAQLIEDLREATGGKPIGVKLVAG---HGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLAR 272 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEECCC---CCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHH
Confidence 356778899999999987 9999998332 1567888999888899999977632211 0 0123333445555
Q ss_pred HHhhC-------CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 327 VRKAL-------TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 327 i~~~~-------~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
+.+.+ ++||+++|||+|..|+.+++ ..|||+|.+||+++.-
T Consensus 273 v~~~~~~~~~~~~i~viasGGI~~g~Dv~kal-aLGAd~V~ig~~~l~a 320 (392)
T cd02808 273 AHQALVKNGLRDRVSLIASGGLRTGADVAKAL-ALGADAVGIGTAALIA 320 (392)
T ss_pred HHHHHHHcCCCCCCeEEEECCCCCHHHHHHHH-HcCCCeeeechHHHHh
Confidence 55433 69999999999999999999 7899999999998853
No 117
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=98.64 E-value=2.9e-07 Score=90.27 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=86.3
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEee-------c---cc--ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR-------I---YQ--DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR-------~---~~--d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~ 316 (487)
|+....+|+++.++.+...+.+ -+++-.| + || +..+..++++.+++.|+..|.++.-.+... .
T Consensus 103 gT~a~~~p~~~~~~~~~~g~~i--vvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt--~- 177 (243)
T TIGR01919 103 GTAALENPWWAAAVIRYGGDIV--AVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGL--S- 177 (243)
T ss_pred CchhhCCHHHHHHHHHHccccE--EEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCccc--C-
Confidence 4444578999998877654332 2222222 1 22 233688999999999999999965444332 3
Q ss_pred CCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHH--HhcCCcEEEeccccccCc
Q psy7343 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACL--AQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 317 g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l--~~~Gad~VmiGRa~l~~P 369 (487)
..++++.++++++..++|||++|||.|.+|+.++- +..|+++|++|++++.+-
T Consensus 178 ~G~d~~l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g~ 232 (243)
T TIGR01919 178 GGPNELLLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYARF 232 (243)
T ss_pred CCcCHHHHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcCC
Confidence 34789999999999999999999999999999873 346999999999988764
No 118
>KOG0538|consensus
Probab=98.61 E-value=5.8e-07 Score=88.32 Aligned_cols=206 Identities=21% Similarity=0.200 Sum_probs=126.2
Q ss_pred CCccccccccC--CCchH-HHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHHHHH
Q psy7343 148 SPRFILAPMVD--ASELP-WRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTEAAK 223 (487)
Q Consensus 148 ~~~~~lApma~--~td~~-fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~aa~ 223 (487)
+.|+.+||-+- ..+.. =-..++..+ -+-++|+..+.-... .+++....+.. --..|+. -.|-+-..++.+
T Consensus 68 ~~Pi~iapTa~qkma~pdGE~~taraa~--~~~~~~i~Ss~at~S---~EdI~~aap~~-~rwfQLYvykdr~It~~Lv~ 141 (363)
T KOG0538|consen 68 SAPIMIAPTAMQKMAHPDGELATARAAQ--AAGTIMILSSWATCS---VEDIASAAPPG-IRWFQLYVYKDRDITEQLVK 141 (363)
T ss_pred cceeEEcchHHHhccCCcccHHHHHHHH--hcCCcEEEechhcCC---HHHHHhhCCCC-cEEEEEEecCchHHHHHHHH
Confidence 66888887542 11110 011222222 244566654332222 34444444333 3456666 356666677888
Q ss_pred hhCCc-CcEEEeecCCC----------------cceeecc-------------Ccccc--c--cCChHHHHHHHHHHhhh
Q psy7343 224 LAEPH-CDGIDINIGCP----------------QMVAKRG-------------HYGAY--L--QDDWPLLTNLVSSLRQA 269 (487)
Q Consensus 224 ~~~~~-~d~IdiN~GcP----------------~~i~~~g-------------r~G~~--l--~~d~~~i~eiv~~v~~~ 269 (487)
++|.+ |.++-+....| ..+..++ ..|.+ . .-|+.+-.+=++.++..
T Consensus 142 raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl~W~Di~wLr~~ 221 (363)
T KOG0538|consen 142 RAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSLSWKDIKWLRSI 221 (363)
T ss_pred HHHHcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCCChhhhHHHHhc
Confidence 88876 66655443332 2111110 00000 0 12333333445567888
Q ss_pred ccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHH
Q psy7343 270 VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADV 347 (487)
Q Consensus 270 ~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da 347 (487)
++.|+++|+-+ +.+| ++...++|+++|+|+..+..|. -..++..+.+.++.+++ ++||...|||++..|+
T Consensus 222 T~LPIvvKGil-----t~eD-A~~Ave~G~~GIIVSNHGgRQl--D~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DV 293 (363)
T KOG0538|consen 222 TKLPIVVKGVL-----TGED-ARKAVEAGVAGIIVSNHGGRQL--DYVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDV 293 (363)
T ss_pred CcCCeEEEeec-----ccHH-HHHHHHhCCceEEEeCCCcccc--CcccchHHHHHHHHHHhcCceEEEEecCcccchHH
Confidence 89999999733 3333 4566789999999976665565 34678889999999888 7999999999999999
Q ss_pred HHHHHhcCCcEEEeccccccC
Q psy7343 348 EACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 348 ~~~l~~~Gad~VmiGRa~l~~ 368 (487)
.+.+ ..||.+|.+||+.+..
T Consensus 294 lKAL-ALGAk~VfiGRP~v~g 313 (363)
T KOG0538|consen 294 LKAL-ALGAKGVFIGRPIVWG 313 (363)
T ss_pred HHHH-hcccceEEecCchhee
Confidence 9999 7999999999977655
No 119
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.59 E-value=3.1e-07 Score=89.41 Aligned_cols=146 Identities=23% Similarity=0.338 Sum_probs=96.3
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhh-hccCcEEEEee--c
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQ-AVQVPVSCKIR--I 280 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~-~~~iPV~vKiR--~ 280 (487)
.++.+|+.|. ..+..++.+.++. |+ ..++. |+....||+.+.++.+..-. .+-+-+-++.. +
T Consensus 72 ~~~~i~vgGG-Irs~ed~~~ll~~---------Ga-~~Vvi----gt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v 136 (229)
T PF00977_consen 72 TGIPIQVGGG-IRSIEDAERLLDA---------GA-DRVVI----GTEALEDPELLEELAERYGSQRIVVSLDARDGYKV 136 (229)
T ss_dssp SSSEEEEESS-E-SHHHHHHHHHT---------T--SEEEE----SHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEE
T ss_pred CCccEEEeCc-cCcHHHHHHHHHh---------CC-CEEEe----ChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEE
Confidence 3467777752 2233344444443 33 23333 44456789999998887654 22222222221 1
Q ss_pred ---cccc---ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhc
Q psy7343 281 ---YQDV---NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQT 354 (487)
Q Consensus 281 ---~~d~---~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~ 354 (487)
+|.. .+..++++.+++.|+..+.++.=.+... ..| ++++.++++++.+++|||++|||.+.+|+.++. ..
T Consensus 137 ~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt--~~G-~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~-~~ 212 (229)
T PF00977_consen 137 ATNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGT--MQG-PDLELLKQLAEAVNIPVIASGGVRSLEDLRELK-KA 212 (229)
T ss_dssp EETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTT--SSS---HHHHHHHHHHHSSEEEEESS--SHHHHHHHH-HT
T ss_pred EecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCC--cCC-CCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHH-HC
Confidence 2322 4789999999999999999965444433 334 689999999999999999999999999999999 79
Q ss_pred CCcEEEeccccccC
Q psy7343 355 GVAGVMTAEGNLYN 368 (487)
Q Consensus 355 Gad~VmiGRa~l~~ 368 (487)
|+++|.+|++++..
T Consensus 213 G~~gvivg~al~~g 226 (229)
T PF00977_consen 213 GIDGVIVGSALHEG 226 (229)
T ss_dssp TECEEEESHHHHTT
T ss_pred CCcEEEEehHhhCC
Confidence 99999999998654
No 120
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=98.59 E-value=2.9e-08 Score=96.18 Aligned_cols=155 Identities=25% Similarity=0.379 Sum_probs=96.8
Q ss_pred CCCceeeeeccccCCCCCccccccccCCCchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHhc--CCCCCC
Q psy7343 132 EDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILMS--TPEDRP 205 (487)
Q Consensus 132 ~e~p~~vQl~~~~~~g~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~~--~~~~~P 205 (487)
.+.|+++|+.+. ++..+......+.+.+|..+..|+| |+.+... |..+..+++...++++. .....|
T Consensus 53 ~~~p~~~qi~g~----~~~~~~~aa~~~~~aG~d~ieln~g---~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~ 125 (231)
T cd02801 53 EERPLIVQLGGS----DPETLAEAAKIVEELGADGIDLNMG---CPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIP 125 (231)
T ss_pred cCCCEEEEEcCC----CHHHHHHHHHHHHhcCCCEEEEeCC---CCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCC
Confidence 578999998532 2222222111222223444445556 5544332 55677788877777752 223379
Q ss_pred eeeeec-cCCHH-HHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc
Q psy7343 206 LIIQFC-GNDSK-NLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282 (487)
Q Consensus 206 v~Vqi~-g~d~~-~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~ 282 (487)
+++|++ +.+.+ +..++++.+++. .|.|.++.+-.. .++. ...+++.+. .+++.+++||++++
T Consensus 126 v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~-----~~~~--~~~~~~~~~----~i~~~~~ipvi~~G---- 190 (231)
T cd02801 126 VTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTRE-----QRYS--GPADWDYIA----EIKEAVSIPVIANG---- 190 (231)
T ss_pred EEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHH-----HcCC--CCCCHHHHH----HHHhCCCCeEEEeC----
Confidence 999998 44444 778888888776 677776643211 0011 123555544 46667899999998
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
++.+..++.+.++..|+|+|++ ||..
T Consensus 191 gi~~~~d~~~~l~~~gad~V~i-gr~~ 216 (231)
T cd02801 191 DIFSLEDALRCLEQTGVDGVMI-GRGA 216 (231)
T ss_pred CCCCHHHHHHHHHhcCCCEEEE-cHHh
Confidence 7778899999888889999999 8853
No 121
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=98.55 E-value=1.1e-06 Score=86.36 Aligned_cols=144 Identities=22% Similarity=0.226 Sum_probs=97.7
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCC----hHHHHHHHHHH-hhhccCcEEEE-
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD----WPLLTNLVSSL-RQAVQVPVSCK- 277 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d----~~~i~eiv~~v-~~~~~iPV~vK- 277 (487)
.++.+|+.|.-- . .++.+.++. |+ ..++. |+....| |+++.++++.. .+.+-+-+-+|
T Consensus 82 ~~~~vqvGGGIR-~-e~i~~~l~~---------Ga-~rVii----gT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~ 145 (262)
T PLN02446 82 YPGGLQVGGGVN-S-ENAMSYLDA---------GA-SHVIV----TSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRK 145 (262)
T ss_pred CCCCEEEeCCcc-H-HHHHHHHHc---------CC-CEEEE----chHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEe
Confidence 347788886432 2 444445544 33 33333 3333345 99999988877 33332223333
Q ss_pred --e--ec---ccc---cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHH
Q psy7343 278 --I--RI---YQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADV 347 (487)
Q Consensus 278 --i--R~---~~d---~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da 347 (487)
+ ++ ||. ..+..+++..+.+.|+..|.++.-.+.. ....++.+.++++.+.+++|||++|||.|.+|+
T Consensus 146 ~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDG---tl~G~d~el~~~l~~~~~ipVIASGGv~sleDi 222 (262)
T PLN02446 146 KDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEG---KRLGIDEELVALLGEHSPIPVTYAGGVRSLDDL 222 (262)
T ss_pred cCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCC---cccCCCHHHHHHHHhhCCCCEEEECCCCCHHHH
Confidence 1 11 232 2367888888899999999995544433 233468999999999999999999999999999
Q ss_pred HHHHHhc-CCcEEEeccccc
Q psy7343 348 EACLAQT-GVAGVMTAEGNL 366 (487)
Q Consensus 348 ~~~l~~~-Gad~VmiGRa~l 366 (487)
.++.+.. |+.+|.+|++++
T Consensus 223 ~~L~~~g~g~~gvIvGkAl~ 242 (262)
T PLN02446 223 ERVKVAGGGRVDVTVGSALD 242 (262)
T ss_pred HHHHHcCCCCEEEEEEeeHH
Confidence 9998543 789999999984
No 122
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.55 E-value=1.5e-06 Score=84.05 Aligned_cols=142 Identities=19% Similarity=0.218 Sum_probs=95.0
Q ss_pred Ceeeeecc-CCHHHHHHHHHhhCCcC--cEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEE-EEeec
Q psy7343 205 PLIIQFCG-NDSKNLTEAAKLAEPHC--DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVS-CKIRI 280 (487)
Q Consensus 205 Pv~Vqi~g-~d~~~~~~aa~~~~~~~--d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~-vKiR~ 280 (487)
.+-.+..| .+.++.+..|+++.+.+ +.| ++-+.+. -..++.|.....+-.+.+.+. ++-|. +-
T Consensus 64 ~~lpNTaG~~ta~eAv~~a~lare~~~~~~i--------KlEVi~d-~~~llpd~~~tv~aa~~L~~~-Gf~vlpyc--- 130 (250)
T PRK00208 64 TLLPNTAGCRTAEEAVRTARLAREALGTNWI--------KLEVIGD-DKTLLPDPIETLKAAEILVKE-GFVVLPYC--- 130 (250)
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHhCCCeE--------EEEEecC-CCCCCcCHHHHHHHHHHHHHC-CCEEEEEe---
Confidence 34444444 57788888888887762 222 2223222 122344554443333333211 33333 21
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
.+....++.+++.|++.||.+|..-... .|..+.+.++.+++..++|||+.|||.+++|+.+++ +.|||+|+
T Consensus 131 ----~~d~~~ak~l~~~G~~~vmPlg~pIGsg---~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~Am-elGAdgVl 202 (250)
T PRK00208 131 ----TDDPVLAKRLEEAGCAAVMPLGAPIGSG---LGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAM-ELGADAVL 202 (250)
T ss_pred ----CCCHHHHHHHHHcCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHH-HcCCCEEE
Confidence 1346778899999999999877654432 356678999999998899999999999999999999 69999999
Q ss_pred ecccccc
Q psy7343 361 TAEGNLY 367 (487)
Q Consensus 361 iGRa~l~ 367 (487)
+|+|+..
T Consensus 203 V~SAItk 209 (250)
T PRK00208 203 LNTAIAV 209 (250)
T ss_pred EChHhhC
Confidence 9999874
No 123
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=98.54 E-value=1e-06 Score=90.35 Aligned_cols=95 Identities=28% Similarity=0.382 Sum_probs=77.0
Q ss_pred HHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC-----CCCHHHHHHHHhhCC-CcEEE
Q psy7343 264 SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG-----LASWEHITAVRKALT-IPVIA 337 (487)
Q Consensus 264 ~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g-----~~~~~~i~~i~~~~~-iPVi~ 337 (487)
+.++. .++.|..++ .....++..++.|+|+|+++|-.. |+..| .....++.++++.++ ||||+
T Consensus 121 ~~~~~-~g~~v~~~v-------~~~~~A~~~~~~G~d~vI~~g~eA---GGH~g~~~~~~~t~~Lv~ev~~~~~~iPViA 189 (336)
T COG2070 121 ARLKA-AGIKVIHSV-------ITVREALKAERAGADAVIAQGAEA---GGHRGGVDLEVSTFALVPEVVDAVDGIPVIA 189 (336)
T ss_pred HHHHH-cCCeEEEEe-------CCHHHHHHHHhCCCCEEEecCCcC---CCcCCCCCCCccHHHHHHHHHHHhcCCCEEE
Confidence 33443 578888887 678889999999999999966422 23433 223588999999999 99999
Q ss_pred cCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 338 NGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 338 nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
.|||.+.+++..++ ..|||+|++|+.++....
T Consensus 190 AGGI~dg~~i~AAl-alGA~gVq~GT~Fl~t~E 221 (336)
T COG2070 190 AGGIADGRGIAAAL-ALGADGVQMGTRFLATKE 221 (336)
T ss_pred ecCccChHHHHHHH-HhccHHHHhhhhhhcccc
Confidence 99999999999999 799999999999987754
No 124
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=98.54 E-value=1.8e-07 Score=94.57 Aligned_cols=178 Identities=16% Similarity=0.085 Sum_probs=104.8
Q ss_pred CCceEEecCCCCC------CHHHHHHHHHcCCCeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCcc
Q psy7343 78 SPRFILAPMVDAS------ELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRF 151 (487)
Q Consensus 78 ~~~~~LAPMag~t------d~pFR~l~~~~Gadl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~ 151 (487)
+.|+++|||++.+ +..+++.|.++|+..++++|... . .+.+... .+.|+.+|+... .++ .
T Consensus 64 ~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~------~---~~~i~~~-~~~~~~~ql~~~---~~~-~ 129 (299)
T cd02809 64 AMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTT------S---LEEVAAA-APGPRWFQLYVP---RDR-E 129 (299)
T ss_pred CCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcC------C---HHHHHHh-cCCCeEEEEeec---CCH-H
Confidence 5689999998886 78999999999999999988732 1 1111111 237999997432 111 1
Q ss_pred ccccccCCCchHHHHHHHHhCCcc------ceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhh
Q psy7343 152 ILAPMVDASELPWRLLSRRYGSHL------CYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLA 225 (487)
Q Consensus 152 ~lApma~~td~~fr~i~~~~Ga~l------~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~ 225 (487)
.... .. ......|++. |+.+... ...+...++.+ ..+.||++|... ++ +.++.+
T Consensus 130 ~~~~-------~i-~~~~~~g~~~i~l~~~~p~~~~~-----~~~~~i~~l~~--~~~~pvivK~v~-s~----~~a~~a 189 (299)
T cd02809 130 ITED-------LL-RRAEAAGYKALVLTVDTPVLGRR-----LTWDDLAWLRS--QWKGPLILKGIL-TP----EDALRA 189 (299)
T ss_pred HHHH-------HH-HHHHHcCCCEEEEecCCCCCCCC-----CCHHHHHHHHH--hcCCCEEEeecC-CH----HHHHHH
Confidence 1110 01 1223345432 2221111 12223333332 224799999542 22 335555
Q ss_pred CCc-CcEEEeecCCCcceeeccCccccc---cCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcE
Q psy7343 226 EPH-CDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQL 301 (487)
Q Consensus 226 ~~~-~d~IdiN~GcP~~i~~~gr~G~~l---~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~ 301 (487)
++. +|+|.++. + +|.++ ...++.+.++.+.+.. ++||++.+ ++.+..++++.+. .|+|+
T Consensus 190 ~~~G~d~I~v~~-~---------gG~~~~~g~~~~~~l~~i~~~~~~--~ipvia~G----GI~~~~d~~kal~-lGAd~ 252 (299)
T cd02809 190 VDAGADGIVVSN-H---------GGRQLDGAPATIDALPEIVAAVGG--RIEVLLDG----GIRRGTDVLKALA-LGADA 252 (299)
T ss_pred HHCCCCEEEEcC-C---------CCCCCCCCcCHHHHHHHHHHHhcC--CCeEEEeC----CCCCHHHHHHHHH-cCCCE
Confidence 555 77777752 1 11111 3456666665544321 58999998 8889999999996 99999
Q ss_pred EEEEcc
Q psy7343 302 LAVHGR 307 (487)
Q Consensus 302 I~VhgR 307 (487)
|++ ||
T Consensus 253 V~i-g~ 257 (299)
T cd02809 253 VLI-GR 257 (299)
T ss_pred EEE-cH
Confidence 999 77
No 125
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.53 E-value=9.2e-07 Score=86.33 Aligned_cols=113 Identities=18% Similarity=0.146 Sum_probs=84.7
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeec------ccc---cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI------YQD---VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA 319 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~------~~d---~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~ 319 (487)
|+....||+++.++.+...+. +-+++-.|- +|. ..+..++++.+++.|+..+.+..-.+.. .....
T Consensus 105 gt~a~~~~~~l~~~~~~fg~~--ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dG---t~~G~ 179 (234)
T PRK13587 105 GTKGIQDTDWLKEMAHTFPGR--IYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDG---KMSGP 179 (234)
T ss_pred CchHhcCHHHHHHHHHHcCCC--EEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcC---CCCcc
Confidence 555567899999987765332 222222221 221 2356999999999999999884433332 33347
Q ss_pred CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 320 SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 320 ~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
+++.++++.+.+++||++.|||+|.+|+.+++ +.|+++|.+|++++.
T Consensus 180 ~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~-~~G~~~vivG~a~~~ 226 (234)
T PRK13587 180 NFELTGQLVKATTIPVIASGGIRHQQDIQRLA-SLNVHAAIIGKAAHQ 226 (234)
T ss_pred CHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH-HcCCCEEEEhHHHHh
Confidence 89999999999999999999999999999999 689999999999876
No 126
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=98.52 E-value=2.9e-07 Score=85.39 Aligned_cols=105 Identities=22% Similarity=0.328 Sum_probs=73.8
Q ss_pred CChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEE--EccccCCCCCCCCCCCHHHHHHHHhhC
Q psy7343 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV--HGRTVDQRGMNTGLASWEHITAVRKAL 331 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V--hgRt~~~~g~~~g~~~~~~i~~i~~~~ 331 (487)
.+|+.+.++++.+++.. ..+.+-+ +..+-+....+.|+|.|-- .|-|....+ ..+|+++++++++.
T Consensus 76 ~Rp~~l~~li~~i~~~~-~l~MADi-------st~ee~~~A~~~G~D~I~TTLsGYT~~t~~---~~pD~~lv~~l~~~- 143 (192)
T PF04131_consen 76 PRPETLEELIREIKEKY-QLVMADI-------STLEEAINAAELGFDIIGTTLSGYTPYTKG---DGPDFELVRELVQA- 143 (192)
T ss_dssp S-SS-HHHHHHHHHHCT-SEEEEE--------SSHHHHHHHHHTT-SEEE-TTTTSSTTSTT---SSHHHHHHHHHHHT-
T ss_pred CCCcCHHHHHHHHHHhC-cEEeeec-------CCHHHHHHHHHcCCCEEEcccccCCCCCCC---CCCCHHHHHHHHhC-
Confidence 35678899999999886 6677654 4556667888999998843 233333321 45789999999986
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccc
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf 372 (487)
++|||+-|+|.|++++.+++ +.||++|.||.+ +-+|+..
T Consensus 144 ~~pvIaEGri~tpe~a~~al-~~GA~aVVVGsA-ITrP~~I 182 (192)
T PF04131_consen 144 DVPVIAEGRIHTPEQAAKAL-ELGAHAVVVGSA-ITRPQEI 182 (192)
T ss_dssp TSEEEEESS--SHHHHHHHH-HTT-SEEEE-HH-HH-HHHH
T ss_pred CCcEeecCCCCCHHHHHHHH-hcCCeEEEECcc-cCCHHHH
Confidence 99999999999999999999 799999999975 5566553
No 127
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=98.49 E-value=3.2e-06 Score=88.98 Aligned_cols=79 Identities=23% Similarity=0.186 Sum_probs=56.9
Q ss_pred HHHHHHHHHcC-CcEEEEEccccCCCCCCCCC-CCHHHHHHH---HhhC--------CCcEEEcCCCCCHHHHHHHHHhc
Q psy7343 288 VEYARMLERAG-CQLLAVHGRTVDQRGMNTGL-ASWEHITAV---RKAL--------TIPVIANGNIQCLADVEACLAQT 354 (487)
Q Consensus 288 ~e~a~~le~~G-~d~I~VhgRt~~~~g~~~g~-~~~~~i~~i---~~~~--------~iPVi~nGgI~s~~da~~~l~~~ 354 (487)
.+-++.+++.| +|.|++ . . +.|+.++. ..+.++..+ ++.+ ++||++.|||.|++++..++ ..
T Consensus 171 ~eEA~~a~~~g~aD~Ivv-e--~-EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAl-aL 245 (444)
T TIGR02814 171 REEAELARRVPVADDICV-E--A-DSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAF-ML 245 (444)
T ss_pred HHHHHHHHhCCCCcEEEE-e--c-cCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHH-Hc
Confidence 44456777777 588888 3 2 22334332 233444444 4544 79999999999999999999 78
Q ss_pred CCcEEEeccccccCccc
Q psy7343 355 GVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 355 Gad~VmiGRa~l~~P~l 371 (487)
|||+|++|+.++..+.-
T Consensus 246 GAdgV~~GT~flat~Es 262 (444)
T TIGR02814 246 GADFIVTGSVNQCTVEA 262 (444)
T ss_pred CCcEEEeccHHHhCccc
Confidence 99999999999987653
No 128
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.48 E-value=2.2e-06 Score=92.38 Aligned_cols=133 Identities=18% Similarity=0.184 Sum_probs=88.9
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYAR 292 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~ 292 (487)
.++....+..+++...|.|-|.+. || +-..+.+.++.+++.. +.+|+++ ++ .+.+.++
T Consensus 246 ~~~~~~r~~~l~~ag~d~i~iD~~-------~g--------~~~~~~~~i~~ik~~~p~~~vi~g-----~v-~t~e~a~ 304 (505)
T PLN02274 246 RESDKERLEHLVKAGVDVVVLDSS-------QG--------DSIYQLEMIKYIKKTYPELDVIGG-----NV-VTMYQAQ 304 (505)
T ss_pred CccHHHHHHHHHHcCCCEEEEeCC-------CC--------CcHHHHHHHHHHHHhCCCCcEEEe-----cC-CCHHHHH
Confidence 345555555666655777666542 22 2333445666777766 5777764 44 3455577
Q ss_pred HHHHcCCcEEEEEc-c-----ccCCCC-CCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 293 MLERAGCQLLAVHG-R-----TVDQRG-MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 293 ~le~~G~d~I~Vhg-R-----t~~~~g-~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
.+.++|+|+|.|.. . |+...+ +......+..+.++.+..++|||+.|||.+..|+.+++ ..||++||+|+.+
T Consensus 305 ~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAl-a~GA~~V~vGs~~ 383 (505)
T PLN02274 305 NLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIADGGISNSGHIVKAL-TLGASTVMMGSFL 383 (505)
T ss_pred HHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHH-HcCCCEEEEchhh
Confidence 78889999998821 1 111110 11112245567777878899999999999999999999 7899999999988
Q ss_pred ccC
Q psy7343 366 LYN 368 (487)
Q Consensus 366 l~~ 368 (487)
..-
T Consensus 384 ~~t 386 (505)
T PLN02274 384 AGT 386 (505)
T ss_pred ccc
Confidence 765
No 129
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=98.48 E-value=1.1e-06 Score=83.24 Aligned_cols=116 Identities=30% Similarity=0.470 Sum_probs=81.2
Q ss_pred CcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEE--------------
Q psy7343 239 PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV-------------- 304 (487)
Q Consensus 239 P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V-------------- 304 (487)
|..+...| |-+.+.||..+.+|+. +++|||.+|.|+|- .-.++.|+..|+|.|.=
T Consensus 51 PaDiR~aG--GVaRMaDp~~i~eim~----aVsIPVMAKvRIGH-----~~EA~iLealgVD~IDESEVLTPAD~~~Hi~ 119 (296)
T COG0214 51 PADIRAAG--GVARMADPKMIEEIMD----AVSIPVMAKVRIGH-----FVEAQILEALGVDMIDESEVLTPADEEFHIN 119 (296)
T ss_pred cHHHHhcc--CccccCCHHHHHHHHH----hcccceeeeeecch-----hHHHHHHHHhCCCccccccccCCCchhhhcc
Confidence 55544433 5567899999998776 46899999999983 23467899999998831
Q ss_pred ---------Ec------------------cccCCCCCCCCC----------------------------------CCHHH
Q psy7343 305 ---------HG------------------RTVDQRGMNTGL----------------------------------ASWEH 323 (487)
Q Consensus 305 ---------hg------------------Rt~~~~g~~~g~----------------------------------~~~~~ 323 (487)
.| ||+.+. -+|. +-+++
T Consensus 120 K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEa--GTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~el 197 (296)
T COG0214 120 KWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEA--GTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYEL 197 (296)
T ss_pred hhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCC--CCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHH
Confidence 11 222221 1111 12355
Q ss_pred HHHHHhhCCCcEE--EcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 324 ITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 324 i~~i~~~~~iPVi--~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
++++++.-++||+ +.|||.|+.|+.-++ ..|||||.+|.|++..
T Consensus 198 v~~~~~~grLPVvnFAAGGvATPADAALMM-~LGadGVFVGSGIFKS 243 (296)
T COG0214 198 VKEVAKLGRLPVVNFAAGGVATPADAALMM-QLGADGVFVGSGIFKS 243 (296)
T ss_pred HHHHHHhCCCCeEeecccCcCChhHHHHHH-HhCCCeEEecccccCC
Confidence 5566666678875 899999999999998 7999999999996543
No 130
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.48 E-value=2.4e-06 Score=91.28 Aligned_cols=134 Identities=22% Similarity=0.250 Sum_probs=93.4
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYAR 292 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~ 292 (487)
.++.+.++..+++..+|.|.|+... | +-+.+.+.++.+++.. ++||++. ++ ...+-++
T Consensus 222 ~~~~~~r~~~L~~aG~d~I~vd~a~-------g--------~~~~~~~~i~~i~~~~~~~~vi~G-----~v-~t~~~a~ 280 (450)
T TIGR01302 222 REFDKERAEALVKAGVDVIVIDSSH-------G--------HSIYVIDSIKEIKKTYPDLDIIAG-----NV-ATAEQAK 280 (450)
T ss_pred chhHHHHHHHHHHhCCCEEEEECCC-------C--------cHhHHHHHHHHHHHhCCCCCEEEE-----eC-CCHHHHH
Confidence 3456666666676668888887654 1 1234566777788774 7899884 34 3455667
Q ss_pred HHHHcCCcEEEEE-ccc-----cCCCCCCCCCCCHHHHHHHHh---hCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 293 MLERAGCQLLAVH-GRT-----VDQRGMNTGLASWEHITAVRK---ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 293 ~le~~G~d~I~Vh-gRt-----~~~~g~~~g~~~~~~i~~i~~---~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
.+.++|+|+|.|. |.+ +... -.|.+....+.++.+ ..++|||+.|||+++.|+.+++ ..||+.||+|+
T Consensus 281 ~l~~aGad~i~vg~g~G~~~~t~~~~--~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAl-a~GA~~V~~G~ 357 (450)
T TIGR01302 281 ALIDAGADGLRVGIGPGSICTTRIVA--GVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKAL-AAGADAVMLGS 357 (450)
T ss_pred HHHHhCCCEEEECCCCCcCCccceec--CCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHH-HcCCCEEEECc
Confidence 7788999999872 221 2111 123445566666644 3589999999999999999999 78999999999
Q ss_pred ccccCccc
Q psy7343 364 GNLYNPAL 371 (487)
Q Consensus 364 a~l~~P~l 371 (487)
.+....+-
T Consensus 358 ~~a~~~e~ 365 (450)
T TIGR01302 358 LLAGTTES 365 (450)
T ss_pred hhhcCCcC
Confidence 87666443
No 131
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.47 E-value=3.6e-06 Score=90.68 Aligned_cols=132 Identities=22% Similarity=0.277 Sum_probs=89.0
Q ss_pred cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHH
Q psy7343 212 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 212 g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~ 290 (487)
+..++....+..+++...|.|.|+.. ||. .....+.++.+++.. +++|++. ++. ..+-
T Consensus 237 g~~~~~~~~~~~l~~ag~d~i~id~a-------~G~--------s~~~~~~i~~ik~~~~~~~v~aG-----~V~-t~~~ 295 (495)
T PTZ00314 237 STRPEDIERAAALIEAGVDVLVVDSS-------QGN--------SIYQIDMIKKLKSNYPHVDIIAG-----NVV-TADQ 295 (495)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEecC-------CCC--------chHHHHHHHHHHhhCCCceEEEC-----CcC-CHHH
Confidence 44566655555566666888888864 332 222345666677765 6788773 343 4455
Q ss_pred HHHHHHcCCcEEEEEcc-------ccCCCCCCCCCCCHHHHHHHH---hhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 291 ARMLERAGCQLLAVHGR-------TVDQRGMNTGLASWEHITAVR---KALTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 291 a~~le~~G~d~I~VhgR-------t~~~~g~~~g~~~~~~i~~i~---~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
++.+.++|+|+|.+ |- |+... -.|.+....+.++. +..++|||+.|||.++.|+.+++ ..|||+||
T Consensus 296 a~~~~~aGad~I~v-g~g~Gs~~~t~~~~--~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAl-a~GA~~Vm 371 (495)
T PTZ00314 296 AKNLIDAGADGLRI-GMGSGSICITQEVC--AVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKAL-ALGADCVM 371 (495)
T ss_pred HHHHHHcCCCEEEE-CCcCCcccccchhc--cCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHH-HcCCCEEE
Confidence 67788899999987 31 11111 12344555555544 44589999999999999999999 79999999
Q ss_pred eccccccC
Q psy7343 361 TAEGNLYN 368 (487)
Q Consensus 361 iGRa~l~~ 368 (487)
+|+.+...
T Consensus 372 ~G~~~a~~ 379 (495)
T PTZ00314 372 LGSLLAGT 379 (495)
T ss_pred ECchhccc
Confidence 99987664
No 132
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.45 E-value=1.4e-06 Score=85.34 Aligned_cols=115 Identities=15% Similarity=0.124 Sum_probs=82.8
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeec------cc---ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI------YQ---DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA 319 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~------~~---d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~ 319 (487)
|+....||+++.++ ...-+. +-+++-.|- +| ...+..++++.+++.|+..|.+..-.+... ..| +
T Consensus 102 gT~a~~~p~~l~~~-~~~~~~--ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt--~~G-~ 175 (241)
T PRK14114 102 SSKVLEDPSFLKFL-KEIDVE--PVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGT--LQE-H 175 (241)
T ss_pred CchhhCCHHHHHHH-HHhCCC--EEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhc--CCC-c
Confidence 45456789998887 333222 222222211 22 223679999999999999999843333322 333 7
Q ss_pred CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHh----cC-CcEEEeccccccCc
Q psy7343 320 SWEHITAVRKALTIPVIANGNIQCLADVEACLAQ----TG-VAGVMTAEGNLYNP 369 (487)
Q Consensus 320 ~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~----~G-ad~VmiGRa~l~~P 369 (487)
+++.++++++..++|||++|||.|.+|+.++.+. .| +++|.+|++++.+-
T Consensus 176 d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~g~ 230 (241)
T PRK14114 176 DFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLEGI 230 (241)
T ss_pred CHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHCCC
Confidence 8999999999999999999999999999999853 25 99999999987763
No 133
>KOG1799|consensus
Probab=98.45 E-value=4.3e-07 Score=90.35 Aligned_cols=193 Identities=19% Similarity=0.272 Sum_probs=135.8
Q ss_pred CCCCeeeeec----cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEE
Q psy7343 202 EDRPLIIQFC----GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSC 276 (487)
Q Consensus 202 ~~~Pv~Vqi~----g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~v 276 (487)
.+.|+.+-|. -++...+.+++...+++ .|..|+|+.||...-.+| .|.++-.+|....|+...|+....||++.
T Consensus 200 ~~~p~~imIas~Mciynk~~w~el~d~~eqag~d~lE~nlscphgm~erg-mgla~gq~p~v~~EvC~Wi~A~~~Ip~~~ 278 (471)
T KOG1799|consen 200 NVEPVVIMIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPHGMCERG-MGLALGQCPIVDCEVCGWINAKATIPMVS 278 (471)
T ss_pred ccCCceeeehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCCCCcccc-ccceeccChhhhHHHhhhhhhcccccccc
Confidence 3456655543 35667788888888887 899999999997654444 46777789999999999999989999999
Q ss_pred EeecccccccHHHHHHHHHHcCCcEEEEEc-------------cc------cCCCCCCCCCCCH----HHHHHHHhhC-C
Q psy7343 277 KIRIYQDVNKTVEYARMLERAGCQLLAVHG-------------RT------VDQRGMNTGLASW----EHITAVRKAL-T 332 (487)
Q Consensus 277 KiR~~~d~~~~~e~a~~le~~G~d~I~Vhg-------------Rt------~~~~g~~~g~~~~----~~i~~i~~~~-~ 332 (487)
|+ .+++.+..+.++.....||.+|.... |. +...|+|++.+-. ..+..|.+.+ .
T Consensus 279 km--TPNitd~revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG~S~~AvRPIAl~~V~~IA~~m~~ 356 (471)
T KOG1799|consen 279 KM--TPNITDKREVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGGYSYKAVRPIALAKVMNIAKMMKE 356 (471)
T ss_pred cc--CCCcccccccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCCccccccchHHHHHHHHHHHHhhc
Confidence 97 44566778888888899988885311 10 1123456665532 3334444444 7
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCCCCcHHHHHHHHHHHHHcC-hhHHHHHHHH
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYP-VRLQYARGHV 404 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~~~~~~~~l~~~~~~~-~~~~~~r~~l 404 (487)
.|+.+.|||.|..|+.+++ ..|+.-|++.+|.+..-+-.- ...-.++-+++.+++ ..+.++|+|-
T Consensus 357 F~l~~~GGvEt~~~~~~Fi-l~Gs~~vQVCt~V~~~~~~~V------~~~Ca~LK~~m~~~~~~ti~~~~G~S 422 (471)
T KOG1799|consen 357 FSLSGIGGVETGYDAAEFI-LLGSNTVQVCTGVMMHGYGHV------KTLCAELKDFMKQHNFSTIEEFRGHS 422 (471)
T ss_pred CccccccCcccccchhhHh-hcCCcHhhhhhHHHhcCcchH------HHHHHHHHHHHHHcCchhhhhccCcc
Confidence 8999999999999999999 799999999998776543211 112223344555553 3456677774
No 134
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.44 E-value=4.5e-06 Score=85.06 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=105.8
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc-CcEEEEee
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VPVSCKIR 279 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iPV~vKiR 279 (487)
...|+..++.+.+++++.+.++.+ +..|+.|.||+|. +++...+.++++++.++ +++.++.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~----------------~~~~d~~~v~~lr~~~g~~~l~vD~n 185 (316)
T cd03319 122 RPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGG----------------DLEDDIERIRAIREAAPDARLRVDAN 185 (316)
T ss_pred CCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCC----------------ChhhHHHHHHHHHHhCCCCeEEEeCC
Confidence 456777888877888887766544 4458999998764 22334566777777664 77888887
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
-+++..+..++++.+++.|+++|- +. +. ..+++.++++++.+++||++++.+.+.+++.++++..++|.|
T Consensus 186 ~~~~~~~A~~~~~~l~~~~l~~iE-------eP--~~-~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v 255 (316)
T cd03319 186 QGWTPEEAVELLRELAELGVELIE-------QP--VP-AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGI 255 (316)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEE-------CC--CC-CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEE
Confidence 788888899999999999998882 21 32 457899999999999999999999999999999988889999
Q ss_pred Eec
Q psy7343 360 MTA 362 (487)
Q Consensus 360 miG 362 (487)
++-
T Consensus 256 ~~~ 258 (316)
T cd03319 256 NIK 258 (316)
T ss_pred EEe
Confidence 764
No 135
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=98.43 E-value=1.2e-06 Score=88.70 Aligned_cols=119 Identities=21% Similarity=0.290 Sum_probs=76.4
Q ss_pred chhhhcChhHHHHHHh--cCCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcc-eee-------ccCcccc
Q psy7343 183 AHQFIADKKLRQEILM--STPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQM-VAK-------RGHYGAY 251 (487)
Q Consensus 183 ~~~Ll~~~~~~~~~l~--~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~-i~~-------~gr~G~~ 251 (487)
+..+.++++...++++ +...+.||+||+.. +.++..++++.++++ .|+|++.-.-+.. +.. ...+|+.
T Consensus 135 g~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~-~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~ 213 (301)
T PRK07259 135 GMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP-NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGL 213 (301)
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEcCC-CchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCcc
Confidence 4566778888877775 22337899999985 445777888888776 7888763211110 000 0011111
Q ss_pred -ccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 252 -LQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 252 -l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
.........+.+..+++.+++||++.+ ++.+..++.+.+. +|+|.|++ +|.
T Consensus 214 sg~~~~p~~l~~v~~i~~~~~ipvi~~G----GI~~~~da~~~l~-aGAd~V~i-gr~ 265 (301)
T PRK07259 214 SGPAIKPIALRMVYQVYQAVDIPIIGMG----GISSAEDAIEFIM-AGASAVQV-GTA 265 (301)
T ss_pred CCcCcccccHHHHHHHHHhCCCCEEEEC----CCCCHHHHHHHHH-cCCCceeE-cHH
Confidence 011112344556667777899999998 6778888888885 89999999 874
No 136
>KOG1606|consensus
Probab=98.43 E-value=1.1e-06 Score=81.90 Aligned_cols=51 Identities=22% Similarity=0.373 Sum_probs=40.1
Q ss_pred HHHHHHHhhCCCcEE--EcCCCCCHHHHHHHHHhcCCcEEEeccccccCccccc
Q psy7343 322 EHITAVRKALTIPVI--ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFT 373 (487)
Q Consensus 322 ~~i~~i~~~~~iPVi--~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~ 373 (487)
+++++.++.-++||+ +.|||.|+.|+.-++ +.|||||.+|.|.+..++-++
T Consensus 197 dLv~~t~q~GrlPVV~FAaGGvaTPADAALmM-QLGCdGVFVGSgiFks~dP~k 249 (296)
T KOG1606|consen 197 DLVKQTKQLGRLPVVNFAAGGVATPADAALMM-QLGCDGVFVGSGIFKSGDPVK 249 (296)
T ss_pred HHHHHHHHcCCCceEEecccCcCChhHHHHHH-HcCCCeEEeccccccCCCHHH
Confidence 444444555578885 899999999999998 799999999999877665543
No 137
>PRK07695 transcriptional regulator TenI; Provisional
Probab=98.42 E-value=7.1e-06 Score=78.11 Aligned_cols=76 Identities=26% Similarity=0.402 Sum_probs=59.4
Q ss_pred HHHHHHHHcCCcEEEEEccccCC--CCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQ--RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~--~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
+.++.+++.|+|+|++ |..... ..++ ....++.++++++.+++||++.||| +.+++.+++ ..|+|+|++|+++.
T Consensus 106 e~a~~a~~~Gadyi~~-g~v~~t~~k~~~-~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~-~~Ga~gvav~s~i~ 181 (201)
T PRK07695 106 EEAIQAEKNGADYVVY-GHVFPTDCKKGV-PARGLEELSDIARALSIPVIAIGGI-TPENTRDVL-AAGVSGIAVMSGIF 181 (201)
T ss_pred HHHHHHHHcCCCEEEE-CCCCCCCCCCCC-CCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHH-HcCCCEEEEEHHHh
Confidence 3456778899999987 543221 1111 2346899999999999999999999 899999999 69999999999988
Q ss_pred cC
Q psy7343 367 YN 368 (487)
Q Consensus 367 ~~ 368 (487)
..
T Consensus 182 ~~ 183 (201)
T PRK07695 182 SS 183 (201)
T ss_pred cC
Confidence 54
No 138
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=98.41 E-value=6.6e-07 Score=84.87 Aligned_cols=88 Identities=23% Similarity=0.359 Sum_probs=76.1
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+..++.++++...+.|+|.+++-.-|....+ ....++.++++.+.+.||+...|||+|.+|+.++| ..|||-|.|.
T Consensus 28 d~GDpVelA~~Y~e~GADElvFlDItAs~~g---r~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll-~aGADKVSIN 103 (256)
T COG0107 28 DAGDPVELAKRYNEEGADELVFLDITASSEG---RETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLL-RAGADKVSIN 103 (256)
T ss_pred hcCChHHHHHHHHHcCCCeEEEEeccccccc---chhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHH-HcCCCeeeeC
Confidence 4558899999999999999987555544321 23568999999999999999999999999999999 8999999999
Q ss_pred cccccCcccccC
Q psy7343 363 EGNLYNPALFTG 374 (487)
Q Consensus 363 Ra~l~~P~lf~~ 374 (487)
++++.||.|+++
T Consensus 104 saAv~~p~lI~~ 115 (256)
T COG0107 104 SAAVKDPELITE 115 (256)
T ss_pred hhHhcChHHHHH
Confidence 999999999764
No 139
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.41 E-value=1.2e-05 Score=75.43 Aligned_cols=150 Identities=21% Similarity=0.309 Sum_probs=106.8
Q ss_pred HHhcCCC-CCCeeeeeccCC----HHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhh
Q psy7343 196 ILMSTPE-DRPLIIQFCGND----SKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269 (487)
Q Consensus 196 ~l~~~~~-~~Pv~Vqi~g~d----~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~ 269 (487)
..+.... +.|+++++...+ .++..+.++.+++. +|+|.+.. |. +.....+.+.+.+.++.+.+.
T Consensus 40 ~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~--~~--------~~~~~~~~~~~~~~~~~i~~~ 109 (201)
T cd00945 40 AADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVI--NI--------GSLKEGDWEEVLEEIAAVVEA 109 (201)
T ss_pred HHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEec--cH--------HHHhCCCHHHHHHHHHHHHHH
Confidence 3333344 689999998766 77778888877776 77776631 11 111111467888888888887
Q ss_pred c--cCcEEEEeecccc--cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCC
Q psy7343 270 V--QVPVSCKIRIYQD--VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQC 343 (487)
Q Consensus 270 ~--~iPV~vKiR~~~d--~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s 343 (487)
+ ++|+++....+.. .+...++++.+++.|+++|-.+.. +..+..+++.++++++.. ++||+..||+.+
T Consensus 110 ~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~------~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~ 183 (201)
T cd00945 110 ADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTG------FGGGGATVEDVKLMKEAVGGRVGVKAAGGIKT 183 (201)
T ss_pred hcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCC------CCCCCCCHHHHHHHHHhcccCCcEEEECCCCC
Confidence 4 8999998765432 334555666678899999987321 123446788899998887 679999999999
Q ss_pred HHHHHHHHHhcCCcEEEec
Q psy7343 344 LADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 344 ~~da~~~l~~~Gad~VmiG 362 (487)
.+.+.+.+ ..||+++++|
T Consensus 184 ~~~~~~~~-~~Ga~g~~~g 201 (201)
T cd00945 184 LEDALAAI-EAGADGIGTS 201 (201)
T ss_pred HHHHHHHH-HhccceeecC
Confidence 99999999 6799999876
No 140
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.41 E-value=8.7e-07 Score=86.23 Aligned_cols=85 Identities=24% Similarity=0.327 Sum_probs=74.9
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
+..++++.+++.|++.+.++...+.. .....+++.++++++.+++||+++|||+|.+|+++++ ..|+++|++|+++
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~---~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~-~~G~~~vilg~~~ 106 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASK---RGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLL-SLGADKVSINTAA 106 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcc---cCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHH-HcCCCEEEEChhH
Confidence 78999999999999999997775543 2345789999999999999999999999999999988 6799999999999
Q ss_pred ccCcccccC
Q psy7343 366 LYNPALFTG 374 (487)
Q Consensus 366 l~~P~lf~~ 374 (487)
+.||.++.+
T Consensus 107 l~~~~~~~~ 115 (232)
T TIGR03572 107 LENPDLIEE 115 (232)
T ss_pred hcCHHHHHH
Confidence 999987653
No 141
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.38 E-value=2.5e-06 Score=83.25 Aligned_cols=113 Identities=19% Similarity=0.156 Sum_probs=83.8
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecc-----cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY-----QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH 323 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~-----~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~ 323 (487)
|+....+ +.+.++++...+. .+-+++-.+-+ .+..+..++++.+++. ++.+.+..-.+... ....+++.
T Consensus 107 gt~~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~di~~~G~---~~g~~~~~ 180 (233)
T cd04723 107 GTETLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVLDIDRVGS---GQGPDLEL 180 (233)
T ss_pred cceeccc-hHHHHHHHhcCCC-CeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEEEcCcccc---CCCcCHHH
Confidence 3444567 8888888776431 12223322212 1334689999999999 99998855433322 23468999
Q ss_pred HHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 324 i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
++++.+.+++||++.|||+|.+|+++++ ..|+++|.+|++++.+
T Consensus 181 ~~~i~~~~~ipvi~~GGi~s~edi~~l~-~~G~~~vivGsal~~g 224 (233)
T cd04723 181 LERLAARADIPVIAAGGVRSVEDLELLK-KLGASGALVASALHDG 224 (233)
T ss_pred HHHHHHhcCCCEEEeCCCCCHHHHHHHH-HcCCCEEEEehHHHcC
Confidence 9999999999999999999999999999 6899999999998876
No 142
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=98.37 E-value=5.6e-07 Score=95.32 Aligned_cols=191 Identities=14% Similarity=0.111 Sum_probs=109.7
Q ss_pred CeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCcccccccc-CCCchHHHHHHHHhCCccceec---
Q psy7343 104 HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMV-DASELPWRLLSRRYGSHLCYTP--- 179 (487)
Q Consensus 104 dl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApma-~~td~~fr~i~~~~Ga~l~~t~--- 179 (487)
++..+||+++.++.+..+...+..... .+.|+++|+.+. ..+...+-++ .+.+.++..+..|+| ||..
T Consensus 71 g~~n~~~~s~~~~~~~~~~~~~~~~~~-~~~p~i~si~g~----~~~~~~~~~a~~~~~~g~d~ielN~s---cP~~~~~ 142 (420)
T PRK08318 71 GFNNIELITDRPLEVNLREIRRVKRDY-PDRALIASIMVE----CNEEEWKEIAPLVEETGADGIELNFG---CPHGMSE 142 (420)
T ss_pred cccCcccccccCHHHHHHHHHHHHhhC-CCceEEEEeccC----CCHHHHHHHHHHHHhcCCCEEEEeCC---CCCCccc
Confidence 566788888877743333333333322 357899996321 0221111111 011111222333445 5541
Q ss_pred cccchhhhcChhHHHHHHhc--CCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEe-ecCCC-c---------ceeec
Q psy7343 180 MVSAHQFIADKKLRQEILMS--TPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDI-NIGCP-Q---------MVAKR 245 (487)
Q Consensus 180 ~v~~~~Ll~~~~~~~~~l~~--~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~Idi-N~GcP-~---------~i~~~ 245 (487)
.-.+..+.++++...++++. ...++||+|||+.+ ..++.++++.++++ .|+|-+ |-=.. . .-..|
T Consensus 143 ~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~-~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~ 221 (420)
T PRK08318 143 RGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPN-ITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVN 221 (420)
T ss_pred cCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCC-cccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceec
Confidence 11356788999998888862 33468999999853 33467778877666 676652 21100 0 00123
Q ss_pred cCccccc---cCChHHHHHHHHHHhhhc---cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 246 GHYGAYL---QDDWPLLTNLVSSLRQAV---QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 246 gr~G~~l---~~d~~~i~eiv~~v~~~~---~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
++++... ........+.+..+++.+ ++||++++ ++.+..|+.+.+. +|||+|+| ++..
T Consensus 222 ~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~G----GI~s~~da~e~i~-aGA~~Vqi-~ta~ 285 (420)
T PRK08318 222 GKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIG----GIETWRDAAEFIL-LGAGTVQV-CTAA 285 (420)
T ss_pred CCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeec----CcCCHHHHHHHHH-hCCChhee-eeee
Confidence 3332221 222333455666676665 79999998 8889999999987 99999999 7753
No 143
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.37 E-value=3.1e-06 Score=82.44 Aligned_cols=113 Identities=12% Similarity=0.091 Sum_probs=82.9
Q ss_pred cccccCChHHHHHHHHHH-hhhccCcEEEEe----ec---ccc--cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSL-RQAVQVPVSCKI----RI---YQD--VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL 318 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v-~~~~~iPV~vKi----R~---~~d--~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~ 318 (487)
|+....+|+++.++.+.. .+.+ -+++-. ++ +|. ..+..++++.+++.|+..+.++.=.+... ..|
T Consensus 102 gt~a~~~p~~~~~~~~~~g~~~i--vvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt--~~G- 176 (232)
T PRK13586 102 STIVFTNFNLFHDIVREIGSNRV--LVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLGIIFTYISNEGT--TKG- 176 (232)
T ss_pred CchhhCCHHHHHHHHHHhCCCCE--EEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEEEeccccccc--CcC-
Confidence 455567999999988776 2322 122222 11 232 23678999999999999999855444332 334
Q ss_pred CCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 319 ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 319 ~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
.+++.++++++. ..|++++|||.|.+|+.++. +.|+++|.+|++++.+
T Consensus 177 ~d~el~~~~~~~-~~~viasGGv~s~~Dl~~l~-~~G~~gvivg~Aly~g 224 (232)
T PRK13586 177 IDYNVKDYARLI-RGLKEYAGGVSSDADLEYLK-NVGFDYIIVGMAFYLG 224 (232)
T ss_pred cCHHHHHHHHhC-CCCEEEECCCCCHHHHHHHH-HCCCCEEEEehhhhcC
Confidence 689999998876 55699999999999999998 6899999999998754
No 144
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.36 E-value=4.7e-06 Score=82.40 Aligned_cols=149 Identities=17% Similarity=0.170 Sum_probs=99.3
Q ss_pred CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccC------ccccc--cCChHHHHHHHHHHhhh-ccCcEEEEeeccc
Q psy7343 213 NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGH------YGAYL--QDDWPLLTNLVSSLRQA-VQVPVSCKIRIYQ 282 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr------~G~~l--~~d~~~i~eiv~~v~~~-~~iPV~vKiR~~~ 282 (487)
.|.+.+.++++.+.+. +|.||| |.|..-..-++ .-.+| --+.+.+.++++++++. .++|+..=+ ..
T Consensus 21 P~~~~~~~~~~~l~~~Gad~iEl--GiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~--Y~ 96 (256)
T TIGR00262 21 PTLETSLEIIKTLIEAGADALEL--GVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLT--YY 96 (256)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE--CCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEE--ec
Confidence 4778888888876655 899998 55542111110 00011 13567788889999876 688876322 11
Q ss_pred cc---ccHHHHHHHHHHcCCcEEEEEcc--------------------------cc-----------C------CCCCCC
Q psy7343 283 DV---NKTVEYARMLERAGCQLLAVHGR--------------------------TV-----------D------QRGMNT 316 (487)
Q Consensus 283 d~---~~~~e~a~~le~~G~d~I~VhgR--------------------------t~-----------~------~~g~~~ 316 (487)
+. --.+++++.+.++|+|+|++|.= |. . ...+++
T Consensus 97 Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~T 176 (256)
T TIGR00262 97 NLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVT 176 (256)
T ss_pred cHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCC
Confidence 11 12367777888888888877540 00 0 011234
Q ss_pred CC------CCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 317 GL------ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 317 g~------~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
|. ...+.++++++..+.||+..|||+|++++.++. +.|||+|.+|++++
T Consensus 177 G~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~-~~GADgvVvGSaiv 231 (256)
T TIGR00262 177 GARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAI-DAGADGVIVGSAIV 231 (256)
T ss_pred CCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHH-HcCCCEEEECHHHH
Confidence 43 135889999998899999999999999999998 78999999999875
No 145
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=98.34 E-value=2.4e-06 Score=85.81 Aligned_cols=119 Identities=24% Similarity=0.292 Sum_probs=78.6
Q ss_pred hhhhcChhHHHHHHhc--CCCCCCeeeeecc-CCHHHHHHHHHhhCCc-CcEEEeecCCCccee---------eccCccc
Q psy7343 184 HQFIADKKLRQEILMS--TPEDRPLIIQFCG-NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVA---------KRGHYGA 250 (487)
Q Consensus 184 ~~Ll~~~~~~~~~l~~--~~~~~Pv~Vqi~g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~---------~~gr~G~ 250 (487)
..+.++++...++++. ...+.||++|+.. .+.++..+.++.++++ +|+|.++.+.+.... ..+..|-
T Consensus 141 ~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~ 220 (289)
T cd02810 141 RQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGL 220 (289)
T ss_pred cccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCcc
Confidence 4466777777777652 2237899999994 5677888899888776 899988744321100 0011010
Q ss_pred cccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 251 YLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 251 ~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
..........+.++.+++.+ ++||++.+ ++.+..++.+.+. +|+|+|++ ||.
T Consensus 221 sg~~~~~~~~~~v~~i~~~~~~~ipiia~G----GI~~~~da~~~l~-~GAd~V~v-g~a 274 (289)
T cd02810 221 SGAPIRPLALRWVARLAARLQLDIPIIGVG----GIDSGEDVLEMLM-AGASAVQV-ATA 274 (289)
T ss_pred CcHHHHHHHHHHHHHHHHhcCCCCCEEEEC----CCCCHHHHHHHHH-cCccHheE-cHH
Confidence 00111123355667777777 89999998 7778888888886 89999999 774
No 146
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.32 E-value=8.9e-06 Score=87.20 Aligned_cols=104 Identities=24% Similarity=0.283 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHhhhc-cCcEEE-EeecccccccHHHHHHHHHHcCCcEEEEEcccc----CCCCCCC--CCCCHHHHHHH
Q psy7343 256 WPLLTNLVSSLRQAV-QVPVSC-KIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV----DQRGMNT--GLASWEHITAV 327 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~-~iPV~v-KiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~----~~~g~~~--g~~~~~~i~~i 327 (487)
-..+.++++.+|+.. +++|++ |+ .+.+.++.+.++|+|+|-| |-+. ..+ .++ |.+++..+.++
T Consensus 252 ~~~~~~~i~~ik~~~p~~~v~agnv-------~t~~~a~~l~~aGad~v~v-gig~gsictt~-~~~~~~~p~~~av~~~ 322 (479)
T PRK07807 252 QEKMLEALRAVRALDPGVPIVAGNV-------VTAEGTRDLVEAGADIVKV-GVGPGAMCTTR-MMTGVGRPQFSAVLEC 322 (479)
T ss_pred cHHHHHHHHHHHHHCCCCeEEeecc-------CCHHHHHHHHHcCCCEEEE-CccCCcccccc-cccCCchhHHHHHHHH
Confidence 356677888888876 688888 55 5567778888899999987 4221 111 122 34678888888
Q ss_pred Hh---hCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCc
Q psy7343 328 RK---ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 328 ~~---~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
.+ ..++|||+.|||.++.|+.+++ ..|||+||+|+.|....
T Consensus 323 ~~~~~~~~~~via~ggi~~~~~~~~al-~~ga~~v~~g~~~ag~~ 366 (479)
T PRK07807 323 AAAARELGAHVWADGGVRHPRDVALAL-AAGASNVMIGSWFAGTY 366 (479)
T ss_pred HHHHHhcCCcEEecCCCCCHHHHHHHH-HcCCCeeeccHhhccCc
Confidence 77 4589999999999999999999 68999999999887764
No 147
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=98.29 E-value=1.2e-05 Score=77.80 Aligned_cols=108 Identities=19% Similarity=0.092 Sum_probs=75.9
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEE-eec---ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCK-IRI---YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vK-iR~---~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i 324 (487)
|+....+|+.+.++.. .+ -+-+| +++ +|. +...++.+.+++.|+ ++.+..-.+. +.....+++.+
T Consensus 108 gT~a~~~p~~l~~~~~----vv--slD~~~g~v~~~g~~-~~~~~~~~~~~~~g~-~ii~tdI~~d---Gt~~G~d~eli 176 (221)
T TIGR00734 108 ATETLDITELLRECYT----VV--SLDFKEKFLDASGLF-ESLEEVRDFLNSFDY-GLIVLDIHSV---GTMKGPNLELL 176 (221)
T ss_pred cChhhCCHHHHHHhhh----EE--EEEeECCcccccccc-ccHHHHHHHHHhcCC-EEEEEECCcc---ccCCCCCHHHH
Confidence 4444568988877541 11 12222 221 222 367778888888998 6666322222 12334689999
Q ss_pred HHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 325 TAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 325 ~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
+++++.+++||+++|||.|.+|+.++. +.|+|+|++|++++..
T Consensus 177 ~~i~~~~~~pvia~GGi~s~ed~~~l~-~~Ga~~vivgsal~~g 219 (221)
T TIGR00734 177 TKTLELSEHPVMLGGGISGVEDLELLK-EMGVSAVLVATAVHKG 219 (221)
T ss_pred HHHHhhCCCCEEEeCCCCCHHHHHHHH-HCCCCEEEEhHHhhCC
Confidence 999999999999999999999999977 6899999999998753
No 148
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.27 E-value=2.8e-05 Score=74.87 Aligned_cols=102 Identities=14% Similarity=0.217 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TI 333 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~i 333 (487)
++.+.++++..+. .++.+.+-+ .+..+ ++.+.+.|++.+.+++|..... ..+.+.+.++++.+ ++
T Consensus 107 ~~~~~~~~~~~~~-~g~~~~v~v------~~~~e-~~~~~~~g~~~i~~t~~~~~~~-----~~~~~~~~~l~~~~~~~~ 173 (217)
T cd00331 107 DEQLKELYELARE-LGMEVLVEV------HDEEE-LERALALGAKIIGINNRDLKTF-----EVDLNTTERLAPLIPKDV 173 (217)
T ss_pred HHHHHHHHHHHHH-cCCeEEEEE------CCHHH-HHHHHHcCCCEEEEeCCCcccc-----CcCHHHHHHHHHhCCCCC
Confidence 3666676665533 355554433 23444 5566778999999987654332 35678889998874 79
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
||++.|||.+++|+.+++ +.|+|+|++|++++..++.
T Consensus 174 pvia~gGI~s~edi~~~~-~~Ga~gvivGsai~~~~~p 210 (217)
T cd00331 174 ILVSESGISTPEDVKRLA-EAGADAVLIGESLMRAPDP 210 (217)
T ss_pred EEEEEcCCCCHHHHHHHH-HcCCCEEEECHHHcCCCCH
Confidence 999999999999999999 6899999999999877653
No 149
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=98.27 E-value=1.5e-05 Score=78.93 Aligned_cols=150 Identities=15% Similarity=0.192 Sum_probs=100.6
Q ss_pred CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccC------ccccc--cCChHHHHHHHHHHhhhccCcEEEEeecccc
Q psy7343 213 NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGH------YGAYL--QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD 283 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr------~G~~l--~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d 283 (487)
.|.+.+.++++.+.+. +|.||| |.|..-..-++ .-.+| --+.+.+.++++++++..++|+++=+ ..+
T Consensus 26 P~~~~~~~~~~~l~~~Gad~iEl--GiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~--Y~N 101 (263)
T CHL00200 26 PDIVITKKALKILDKKGADIIEL--GIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFT--YYN 101 (263)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE--CCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEe--ccc
Confidence 4778888888866655 899998 55542111110 01111 12467788888889877888976432 112
Q ss_pred c---ccHHHHHHHHHHcCCcEEEEEcc--------------------------cc-----------C------CCCCCCC
Q psy7343 284 V---NKTVEYARMLERAGCQLLAVHGR--------------------------TV-----------D------QRGMNTG 317 (487)
Q Consensus 284 ~---~~~~e~a~~le~~G~d~I~VhgR--------------------------t~-----------~------~~g~~~g 317 (487)
. --.+++.+.+.++|+|+|.||.= |. . ...+.+|
T Consensus 102 ~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG 181 (263)
T CHL00200 102 PVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTG 181 (263)
T ss_pred HHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCC
Confidence 1 13567788888888888887440 00 0 1122334
Q ss_pred CC------CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 318 LA------SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 318 ~~------~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
.. .-+.++++++.++.||...+||++++++.++. ..|||||.+|.+++.
T Consensus 182 ~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~-~~GADGvVVGSalv~ 236 (263)
T CHL00200 182 LKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIK-GWNINGIVIGSACVQ 236 (263)
T ss_pred CCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHH-hcCCCEEEECHHHHH
Confidence 31 12678888998999999999999999999988 789999999999864
No 150
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=98.27 E-value=2.7e-06 Score=82.63 Aligned_cols=85 Identities=31% Similarity=0.411 Sum_probs=72.5
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+..++++.+++.|++.+.|..-..... ....+++.++++++.+++||++.|||++.+|+++++ +.|||+|++|++
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~---g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~-~~Ga~~vilg~~ 105 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGAKA---GKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALL-DAGVSRVIIGTA 105 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccc---CCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHH-HcCCCEEEECch
Confidence 3789999999999999999966422111 224688999999999999999999999999999999 689999999999
Q ss_pred cccCccccc
Q psy7343 365 NLYNPALFT 373 (487)
Q Consensus 365 ~l~~P~lf~ 373 (487)
++.+|.++.
T Consensus 106 ~l~~~~~l~ 114 (233)
T PRK00748 106 AVKNPELVK 114 (233)
T ss_pred HHhCHHHHH
Confidence 999997765
No 151
>KOG2334|consensus
Probab=98.24 E-value=2.8e-07 Score=93.97 Aligned_cols=234 Identities=20% Similarity=0.277 Sum_probs=149.1
Q ss_pred HhhhCCCC-CceeeeeccccCCCCCccccccccCCCchHHHHHHHHhCCccceecccc----chhhhcChhHHHHHHh--
Q psy7343 126 ILMSTPED-RPLIIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVS----AHQFIADKKLRQEILM-- 198 (487)
Q Consensus 126 ~~~~~~~e-~p~~vQl~~~~~~g~~~~~lApma~~td~~fr~i~~~~Ga~l~~t~~v~----~~~Ll~~~~~~~~~l~-- 198 (487)
.|.+++.+ ..++.|+... ++.+.+ ..|...+-....++.|+| ||-++-. |.+|+.+++++..++.
T Consensus 73 vfr~~~~e~~rlilQ~gT~----sa~lA~-e~A~lv~nDvsgidiN~g---CpK~fSi~~gmgaalLt~~dkl~~IL~sL 144 (477)
T KOG2334|consen 73 VFRTCPAENSRLILQIGTA----SAELAL-EAAKLVDNDVSGIDINMG---CPKEFSIHGGMGAALLTDPDKLVAILYSL 144 (477)
T ss_pred EEEechhhcCeEEEEecCC----cHHHHH-HHHHHhhcccccccccCC---CCCccccccCCCchhhcCHHHHHHHHHHH
Confidence 44455444 4688997322 222222 222222222335688999 7766543 7889999999988886
Q ss_pred cCCCCCCeeeeec-cCCHHHHHHHHHhhCCc-CcEEEeecC---------------------CC-cceeeccCc------
Q psy7343 199 STPEDRPLIIQFC-GNDSKNLTEAAKLAEPH-CDGIDINIG---------------------CP-QMVAKRGHY------ 248 (487)
Q Consensus 199 ~~~~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~-~d~IdiN~G---------------------cP-~~i~~~gr~------ 248 (487)
.....+|+++||| -.+.++..+..+++... ...|.+|+. || ..+..+|..
T Consensus 145 vk~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~vh~rt~d~r~~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y 224 (477)
T KOG2334|consen 145 VKGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITVHCRTRDERNQEPATKDYIREIAQACQMVPVIVNGGSMDIEQY 224 (477)
T ss_pred HhcCcccceeEEEecCCcccHHHHHHHHHhcCCceEEEEeeccccCCCCCCCHHHHHHHHHHhccceEeeccchhhHHhh
Confidence 3455789999998 45677777777777665 666766653 22 111111100
Q ss_pred --------------------------------------------------------------------------------
Q psy7343 249 -------------------------------------------------------------------------------- 248 (487)
Q Consensus 249 -------------------------------------------------------------------------------- 248 (487)
T Consensus 225 ~Di~~~~~~~~~~~vmiAR~A~~n~SiF~~eG~~~~~~~~~~fl~~a~~~dn~~~ntkycl~~il~~~~~~~p~~~~~~~ 304 (477)
T KOG2334|consen 225 SDIEDFQEKTGADSVMIARAAESNPSIFREEGCLSEKEVIREFLRLAVQYDNHYGNTKYCLQRILRGIQEGCPRGKRIQA 304 (477)
T ss_pred hhHHHHHHHhccchhhhhHhhhcCCceeeecCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhhccCchhhHhhc
Confidence
Q ss_pred --cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHH
Q psy7343 249 --GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326 (487)
Q Consensus 249 --G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~ 326 (487)
+......+..+.++.+..++..+.|+ .|.|+..+..+...+++.+++.+ ...+|+|..-.+ -..++.|+.++.
T Consensus 305 ~~~~~~i~k~~~i~d~~~~~~~el~~~~-~k~Rl~~~~~d~~~~~~~le~~~--~l~i~~r~~f~r--~~~pa~~~~~k~ 379 (477)
T KOG2334|consen 305 AQTVAQICKAFEIEDIYATLKRELDTPV-CKKRLLVSPADTVNLAERLEDLS--ALAIHGRKIFDR--PTDPAKWDTPKM 379 (477)
T ss_pred chhHHHHHHHhcchhHHHhhHHhhcccc-ccceeeeCcchhhhHhhhHHhcc--chhhhhcccccc--cCCCcCCCCHHH
Confidence 00000011112222223333344566 67888777778889999999988 556677764333 345678888888
Q ss_pred HHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCC
Q psy7343 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQT 376 (487)
Q Consensus 327 i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~ 376 (487)
+...+.++++++|.+....+. . ..++..+|..++...+-.+|....
T Consensus 380 ~l~~~~~~~~~~~~~ye~~~~---~-d~lf~si~~~~~~~~~ssi~~~n~ 425 (477)
T KOG2334|consen 380 VLADLCVKTKANGPVYETVQR---T-DKLFSSIATARGQKYNSSIWSPNK 425 (477)
T ss_pred HHHHhhhhhcCCCcchhhhhh---h-hhhhHHHhhhhhhhhhccccCcch
Confidence 888889999999999887775 2 567889999999999999987543
No 152
>PLN02591 tryptophan synthase
Probab=98.23 E-value=2e-05 Score=77.48 Aligned_cols=150 Identities=16% Similarity=0.178 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccC------ccccc--cCChHHHHHHHHHHhhhccCcEEEEeecccc
Q psy7343 213 NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGH------YGAYL--QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD 283 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr------~G~~l--~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d 283 (487)
.|.+.+.++++.+.+. +|.||| |-|..-..-++ .-.+| --+.+.+.++++.+++..++|+++=+ ..+
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iEl--GiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~--Y~N 88 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIEL--GVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFT--YYN 88 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE--CCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEe--ccc
Confidence 4778888988866555 899998 55542111110 00111 13567788888888877788976532 111
Q ss_pred c---ccHHHHHHHHHHcCCcEEEEEc--------------------------cccC-----------------CCCCCCC
Q psy7343 284 V---NKTVEYARMLERAGCQLLAVHG--------------------------RTVD-----------------QRGMNTG 317 (487)
Q Consensus 284 ~---~~~~e~a~~le~~G~d~I~Vhg--------------------------Rt~~-----------------~~g~~~g 317 (487)
. -...++.+.+.++|+|++.|-. -|.. ...+.+|
T Consensus 89 ~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG 168 (250)
T PLN02591 89 PILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTG 168 (250)
T ss_pred HHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcC
Confidence 1 1345667777777777776611 1100 0011222
Q ss_pred C-----CC-HHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 318 L-----AS-WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 318 ~-----~~-~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
. .. -+.++++|+..++||+..-||+|++++.+++ ..|||||.+|++++.
T Consensus 169 ~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~-~~GADGvIVGSalVk 223 (250)
T PLN02591 169 ARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIA-GWGADGVIVGSAMVK 223 (250)
T ss_pred CCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHH-hcCCCEEEECHHHHH
Confidence 1 12 2568889998999999999999999999988 789999999999873
No 153
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.19 E-value=0.00012 Score=71.17 Aligned_cols=185 Identities=15% Similarity=0.118 Sum_probs=102.0
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCC-CeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPM 156 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Ga-dl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApm 156 (487)
++++++|||+|+||..|+..+.++|+ +++.++|++.+.+...-+.....+ +.|+.+++... +. .
T Consensus 2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~~~-----~~~~~v~~i~~----~~-~----- 66 (236)
T cd04730 2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRALT-----DKPFGVNLLVP----SS-N----- 66 (236)
T ss_pred CCCEECCCCCCCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHHHhc-----CCCeEEeEecC----CC-C-----
Confidence 46899999999999999999999987 888888888776644322222211 45666675211 11 0
Q ss_pred cCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeec
Q psy7343 157 VDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINI 236 (487)
Q Consensus 157 a~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~ 236 (487)
.....+-..+.+.|++..-.+.. ...+... .+.. .+.++++.+. +.+.... ..+...|.|-+..
T Consensus 67 --~~~~~~~~~~~~~g~d~v~l~~~------~~~~~~~-~~~~--~~i~~i~~v~--~~~~~~~---~~~~gad~i~~~~ 130 (236)
T cd04730 67 --PDFEALLEVALEEGVPVVSFSFG------PPAEVVE-RLKA--AGIKVIPTVT--SVEEARK---AEAAGADALVAQG 130 (236)
T ss_pred --cCHHHHHHHHHhCCCCEEEEcCC------CCHHHHH-HHHH--cCCEEEEeCC--CHHHHHH---HHHcCCCEEEEeC
Confidence 01123445667778765432211 1122222 2221 2456666542 2222222 2223356665432
Q ss_pred CCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 237 GCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 237 GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
.. ..|. +. ..++. ..+.++.+++.+++||++.+ ++.+..++.+.+ +.|+|+|++ |+.
T Consensus 131 ~~-----~~G~-~~--~~~~~-~~~~i~~i~~~~~~Pvi~~G----GI~~~~~v~~~l-~~GadgV~v-gS~ 187 (236)
T cd04730 131 AE-----AGGH-RG--TFDIG-TFALVPEVRDAVDIPVIAAG----GIADGRGIAAAL-ALGADGVQM-GTR 187 (236)
T ss_pred cC-----CCCC-CC--ccccC-HHHHHHHHHHHhCCCEEEEC----CCCCHHHHHHHH-HcCCcEEEE-chh
Confidence 11 0111 11 11111 23455566667789999987 565666666666 489999999 653
No 154
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.19 E-value=2e-05 Score=84.95 Aligned_cols=127 Identities=21% Similarity=0.204 Sum_probs=84.3
Q ss_pred HHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcC
Q psy7343 219 TEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAG 298 (487)
Q Consensus 219 ~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G 298 (487)
..+..+++...|.|+|. . .|+ ..+...+.++.+++..+.++.++. +++.+ .+-++.+.++|
T Consensus 245 ~ra~~Lv~aGvd~i~vd--~-----a~g--------~~~~~~~~i~~ir~~~~~~~~V~a---GnV~t-~e~a~~li~aG 305 (502)
T PRK07107 245 ERVPALVEAGADVLCID--S-----SEG--------YSEWQKRTLDWIREKYGDSVKVGA---GNVVD-REGFRYLAEAG 305 (502)
T ss_pred HHHHHHHHhCCCeEeec--C-----ccc--------ccHHHHHHHHHHHHhCCCCceEEe---ccccC-HHHHHHHHHcC
Confidence 34444455457777764 1 122 233445777788887754455443 24444 44566677899
Q ss_pred CcEEEEEccc-------cCCCCCCCCCCCHHHHHHHHhhC-------C--CcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 299 CQLLAVHGRT-------VDQRGMNTGLASWEHITAVRKAL-------T--IPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 299 ~d~I~VhgRt-------~~~~g~~~g~~~~~~i~~i~~~~-------~--iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+|+|.| |.. +.+. -.|.+.+..+.++.++. + +|||+.|||++.-|+.+.+ ..|||+||+|
T Consensus 306 Ad~I~v-g~g~Gs~c~tr~~~--~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAl-a~GA~~vm~G 381 (502)
T PRK07107 306 ADFVKV-GIGGGSICITREQK--GIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLAL-AMGADFIMLG 381 (502)
T ss_pred CCEEEE-CCCCCcCccccccc--CCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHH-HcCCCeeeeC
Confidence 999998 432 2233 23455666666666543 3 8999999999999999999 7999999999
Q ss_pred cccccC
Q psy7343 363 EGNLYN 368 (487)
Q Consensus 363 Ra~l~~ 368 (487)
|.+-+.
T Consensus 382 ~~~ag~ 387 (502)
T PRK07107 382 RYFARF 387 (502)
T ss_pred hhhhcc
Confidence 977664
No 155
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.17 E-value=5.8e-06 Score=81.10 Aligned_cols=84 Identities=23% Similarity=0.234 Sum_probs=72.9
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
++.+.++.+++.|++.+.+-.-.... ....+.+.++++.+.+++||.+.|||+|.+|+++++ ..||+.|.+|+++
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~----g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l-~~Ga~kvviGs~~ 107 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAF----GRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAAL-ATGCARVNIGTAA 107 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccC----CCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHH-HCCCCEEEECchH
Confidence 78899999999999999884432221 234678999999999999999999999999999999 7899999999999
Q ss_pred ccCcccccC
Q psy7343 366 LYNPALFTG 374 (487)
Q Consensus 366 l~~P~lf~~ 374 (487)
+.||.++.+
T Consensus 108 l~~p~l~~~ 116 (241)
T PRK14024 108 LENPEWCAR 116 (241)
T ss_pred hCCHHHHHH
Confidence 999999864
No 156
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=98.17 E-value=2.9e-05 Score=75.01 Aligned_cols=126 Identities=25% Similarity=0.362 Sum_probs=90.5
Q ss_pred HHHHHhhCCcCcEEE--eecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc---cccccHHHHHHH
Q psy7343 219 TEAAKLAEPHCDGID--INIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY---QDVNKTVEYARM 293 (487)
Q Consensus 219 ~~aa~~~~~~~d~Id--iN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~---~d~~~~~e~a~~ 293 (487)
.++...+++..+.|| +|.|.+. ..+++.+.+-++++++.. .|+.+|+-+. -+.++..++++.
T Consensus 78 ~e~~~Ai~~GA~EiD~Vin~~~~~------------~g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~ 144 (221)
T PRK00507 78 FEAKDAIANGADEIDMVINIGALK------------SGDWDAVEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEI 144 (221)
T ss_pred HHHHHHHHcCCceEeeeccHHHhc------------CCCHHHHHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHH
Confidence 445555666678777 3544432 236888888888888765 3667776442 234467888888
Q ss_pred HHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 294 LERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 294 le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+.++|+|+|-- +-+. ..+.+..+.++.+++.+ +++|.++|||+|.+|+.+++ +.||+.+...++
T Consensus 145 ~~~agadfIKT-sTG~-----~~~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i-~aGA~riGtS~~ 210 (221)
T PRK00507 145 AKEAGADFVKT-STGF-----STGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMI-EAGATRLGTSAG 210 (221)
T ss_pred HHHhCCCEEEc-CCCC-----CCCCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHH-HcCcceEccCcH
Confidence 99999997765 2211 23447788888888887 58999999999999999999 789998877654
No 157
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.17 E-value=5.4e-06 Score=81.06 Aligned_cols=85 Identities=25% Similarity=0.348 Sum_probs=71.3
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
+..++++.+.+.|++.+.+ |..... ......+++.++++.+..++|++.+|||+|.+|++.++ ..|||+|++|+..
T Consensus 33 ~~~e~a~~~~~~G~~~l~i--~dl~~~-~~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~-~~Ga~~v~iGs~~ 108 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHL--VDLDGA-FEGERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLL-DLGVDRVILGTAA 108 (241)
T ss_pred CHHHHHHHHHHcCCCEEEE--Eechhh-hcCCcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHH-HcCCCEEEEChHH
Confidence 6889999999999999866 433321 01224578999999999999999999999999999999 6999999999999
Q ss_pred ccCcccccC
Q psy7343 366 LYNPALFTG 374 (487)
Q Consensus 366 l~~P~lf~~ 374 (487)
+.+|+++.+
T Consensus 109 ~~~~~~~~~ 117 (241)
T PRK13585 109 VENPEIVRE 117 (241)
T ss_pred hhChHHHHH
Confidence 999988753
No 158
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.16 E-value=3.3e-05 Score=83.38 Aligned_cols=102 Identities=25% Similarity=0.326 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccC-------CCCCCCCCCCHHHHHHHH
Q psy7343 257 PLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVD-------QRGMNTGLASWEHITAVR 328 (487)
Q Consensus 257 ~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~-------~~g~~~g~~~~~~i~~i~ 328 (487)
..+.+.++.+++.. ++||+++ ++.+ .+-++.+.++|+|+|.+ |-+.. .. --|.+.++.+.+++
T Consensus 254 ~~vl~~i~~i~~~~p~~~vi~g-----~v~t-~e~a~~l~~aGad~i~v-g~g~gs~~~~r~~~--~~g~p~~~~~~~~~ 324 (486)
T PRK05567 254 EGVLDRVREIKAKYPDVQIIAG-----NVAT-AEAARALIEAGADAVKV-GIGPGSICTTRIVA--GVGVPQITAIADAA 324 (486)
T ss_pred hhHHHHHHHHHhhCCCCCEEEe-----ccCC-HHHHHHHHHcCCCEEEE-CCCCCccccceeec--CCCcCHHHHHHHHH
Confidence 44556677788776 8898885 4444 45566777899999987 42221 11 12456777887776
Q ss_pred hh---CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 329 KA---LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 329 ~~---~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
+. .++|||+.|||+++.|+.+++ ..|||.||+|+.+-.-
T Consensus 325 ~~~~~~~~~viadGGi~~~~di~kAl-a~GA~~v~~G~~~a~~ 366 (486)
T PRK05567 325 EAAKKYGIPVIADGGIRYSGDIAKAL-AAGASAVMLGSMLAGT 366 (486)
T ss_pred HHhccCCCeEEEcCCCCCHHHHHHHH-HhCCCEEEECcccccc
Confidence 64 479999999999999999999 7899999999876554
No 159
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.14 E-value=2.3e-05 Score=83.93 Aligned_cols=107 Identities=21% Similarity=0.233 Sum_probs=74.2
Q ss_pred ChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccC--CCCCCC--CCCCHHHHHHHH-
Q psy7343 255 DWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVD--QRGMNT--GLASWEHITAVR- 328 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~--~~g~~~--g~~~~~~i~~i~- 328 (487)
+++.+.++++.+++.. ++||++- +. .+.+.++.+.++|+|+|-|-+.... ....++ |.+....+.++.
T Consensus 249 ~~~~~~~~i~~i~~~~~~~~vi~g-----~~-~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~ 322 (475)
T TIGR01303 249 HQVKMISAIKAVRALDLGVPIVAG-----NV-VSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAA 322 (475)
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEe-----cc-CCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHH
Confidence 4578888999999875 7899883 23 4456677888999999987322110 000122 223333333332
Q ss_pred --hhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 329 --KALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 329 --~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
+..++|||+.|||+++.|+.+.+ ..|||+||+|+.+-+.
T Consensus 323 ~~~~~~~~viadGgi~~~~di~kal-a~GA~~vm~g~~~ag~ 363 (475)
T TIGR01303 323 EARKLGGHVWADGGVRHPRDVALAL-AAGASNVMVGSWFAGT 363 (475)
T ss_pred HHHHcCCcEEEeCCCCCHHHHHHHH-HcCCCEEeechhhccc
Confidence 22389999999999999999999 7999999999866544
No 160
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=98.13 E-value=7.2e-05 Score=72.44 Aligned_cols=147 Identities=18% Similarity=0.192 Sum_probs=95.7
Q ss_pred eeecc-CCHHHHHHHHHhhCCcCcEEEeecCCCc--ceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccccc
Q psy7343 208 IQFCG-NDSKNLTEAAKLAEPHCDGIDINIGCPQ--MVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDV 284 (487)
Q Consensus 208 Vqi~g-~d~~~~~~aa~~~~~~~d~IdiN~GcP~--~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~ 284 (487)
.+..| .+.++.+..|+++.+.+.....- +.. ++-+.+. -..|+.|+-...+..+.+.+. ++-|.--+
T Consensus 75 PNTaGc~tA~EAv~~A~laRe~~~~~~~~--~~~wIKLEVi~D-~~~LlPD~~etl~Aae~Lv~e-GF~VlPY~------ 144 (267)
T CHL00162 75 PNTAGCQTAEEAIRMAFLGRELAKQLGQE--DNNFVKLEVISD-PKYLLPDPIGTLKAAEFLVKK-GFTVLPYI------ 144 (267)
T ss_pred CcCcCCCCHHHHHHHHHHHHHHhcccccc--CCCeEEEEEeCC-CcccCCChHHHHHHHHHHHHC-CCEEeecC------
Confidence 34443 56777777777766652100000 111 3334432 234556665555544444332 44443322
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+-.-+++.|++.||..||--|- .- |.-.|..+...++.+++..++||+..+||.+++|+.+.+ +.|||+|.+.+|
T Consensus 145 ~~D~v~a~rLed~Gc~aVMPlgs-PI--GSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~Am-ElGaDgVL~nSa 220 (267)
T CHL00162 145 NADPMLAKHLEDIGCATVMPLGS-PI--GSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAM-ELGASGVLLNTA 220 (267)
T ss_pred CCCHHHHHHHHHcCCeEEeeccC-cc--cCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHH-HcCCCEEeecce
Confidence 23456789999999999998432 11 113456678899999999999999999999999999999 799999999999
Q ss_pred cccC
Q psy7343 365 NLYN 368 (487)
Q Consensus 365 ~l~~ 368 (487)
+..-
T Consensus 221 IakA 224 (267)
T CHL00162 221 VAQA 224 (267)
T ss_pred eecC
Confidence 8743
No 161
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.12 E-value=9e-06 Score=80.55 Aligned_cols=85 Identities=19% Similarity=0.290 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
++.++++.+++.|++.+.+..=.+.. .....+.+.++++.+.+++||++.|||++.+|+++++ ..|+++|.+|+++
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~---~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~-~~G~~~vvigs~~ 106 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASK---RGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIF-SLGVEKVSINTAA 106 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCc---CCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHH-HCCCCEEEEChHH
Confidence 78999999999999999984322221 1234689999999999999999999999999999999 6799999999999
Q ss_pred ccCcccccC
Q psy7343 366 LYNPALFTG 374 (487)
Q Consensus 366 l~~P~lf~~ 374 (487)
+.+|.++.+
T Consensus 107 ~~~~~~~~~ 115 (258)
T PRK01033 107 LEDPDLITE 115 (258)
T ss_pred hcCHHHHHH
Confidence 999988754
No 162
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=98.12 E-value=1.4e-05 Score=82.33 Aligned_cols=112 Identities=21% Similarity=0.289 Sum_probs=70.7
Q ss_pred cCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCC------CCCCCCCHHHHH
Q psy7343 253 QDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG------MNTGLASWEHIT 325 (487)
Q Consensus 253 ~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g------~~~g~~~~~~i~ 325 (487)
..+++.+.++++.+|+.. +.||.+|+-.+.. ..+++..+.++|+|.|+|.|....... ...|.+....+.
T Consensus 184 i~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~---~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~ 260 (368)
T PF01645_consen 184 IYSIEDLAQLIEELRELNPGKPVGVKLVAGRG---VEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALA 260 (368)
T ss_dssp -SSHHHHHHHHHHHHHH-TTSEEEEEEE-STT---HHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCCCCcEEEEECCCCc---HHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHH
Confidence 346788899999999988 8999999955432 333444488899999999776322110 011222223344
Q ss_pred HHHhhC-------CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 326 AVRKAL-------TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 326 ~i~~~~-------~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
++.+.+ ++.++++||+.|+.|+.+.+ ..|||+|.+||++|--
T Consensus 261 ~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kal-aLGAD~v~igt~~liA 309 (368)
T PF01645_consen 261 RAHQALVKNGLRDRVSLIASGGLRTGDDVAKAL-ALGADAVYIGTAALIA 309 (368)
T ss_dssp HHHHHHHCTT-CCCSEEEEESS--SHHHHHHHH-HCT-SEEE-SHHHHHH
T ss_pred HHHHHHHHcCCCCceEEEEeCCccCHHHHHHHH-hcCCCeeEecchhhhh
Confidence 443321 58999999999999999999 7999999999987743
No 163
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=98.11 E-value=4.3e-05 Score=74.97 Aligned_cols=150 Identities=18% Similarity=0.163 Sum_probs=96.9
Q ss_pred CCHHHHHHHHHhhCCc-CcEEEeecCCCcceee-ccCcc-----ccc--cCChHHHHHHHHHHhhhccCcEEEEeecccc
Q psy7343 213 NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAK-RGHYG-----AYL--QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD 283 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~-~gr~G-----~~l--~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d 283 (487)
.+.+.+.+.++.++++ +|.|||+. |..-.. .|.+- .+| -.+.+...++++.+++..++|+.+=+-.+ .
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--PfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n-~ 87 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--PFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYN-P 87 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecC-H
Confidence 3667889989888886 89999985 432111 11100 011 12345778888889887788976622111 1
Q ss_pred ccc--HHHHHHHHHHcCCcEEEEEc--------------------------ccc--------C-C---------CCCCCC
Q psy7343 284 VNK--TVEYARMLERAGCQLLAVHG--------------------------RTV--------D-Q---------RGMNTG 317 (487)
Q Consensus 284 ~~~--~~e~a~~le~~G~d~I~Vhg--------------------------Rt~--------~-~---------~g~~~g 317 (487)
... ..++++.+.++|+|+++++. -|. . . .|...+
T Consensus 88 ~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~ 167 (242)
T cd04724 88 ILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGA 167 (242)
T ss_pred HHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCC
Confidence 111 36777888888888888721 000 0 0 111111
Q ss_pred C-----CCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 318 L-----ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 318 ~-----~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
. ...+.++++++..++||+..|||++.+++.++. +. ||++.+|++++.
T Consensus 168 ~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~-~~-ADgvVvGSaiv~ 220 (242)
T cd04724 168 RTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVA-KY-ADGVIVGSALVK 220 (242)
T ss_pred ccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHH-cc-CCEEEECHHHHH
Confidence 1 123778889988899999999999999999998 56 999999988653
No 164
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.11 E-value=8.6e-06 Score=79.50 Aligned_cols=85 Identities=8% Similarity=0.138 Sum_probs=71.9
Q ss_pred cHHHHHHHHHH-cCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 286 KTVEYARMLER-AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 286 ~~~e~a~~le~-~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
++.+.++.+++ .|+|.+.|---.... .....+.+.++++.+.+++||.+.|||+|.+|+++++ ..||+.|.+|+.
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a~---~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l-~~Ga~kvvigt~ 107 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGAK---AQHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYF-AAGINYCIVGTK 107 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECcccc---cCCcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHH-HCCCCEEEECch
Confidence 67789999998 799999984332221 1234678999999999999999999999999999999 789999999999
Q ss_pred cccCcccccC
Q psy7343 365 NLYNPALFTG 374 (487)
Q Consensus 365 ~l~~P~lf~~ 374 (487)
.+.||.++++
T Consensus 108 a~~~~~~l~~ 117 (234)
T PRK13587 108 GIQDTDWLKE 117 (234)
T ss_pred HhcCHHHHHH
Confidence 9999998764
No 165
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.10 E-value=5.1e-05 Score=75.08 Aligned_cols=148 Identities=20% Similarity=0.183 Sum_probs=93.9
Q ss_pred CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccC------ccccc--cCChHHHHHHHHHHh-hhccCcEEEEeeccc
Q psy7343 213 NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGH------YGAYL--QDDWPLLTNLVSSLR-QAVQVPVSCKIRIYQ 282 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr------~G~~l--~~d~~~i~eiv~~v~-~~~~iPV~vKiR~~~ 282 (487)
.|.+.+.++++.+.+. +|.||| |-|..-..-++ .-.+| --+.+.+.++++.++ +..++|+++=+ ..
T Consensus 23 P~~~~~~~~~~~l~~~Gad~iEl--GiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~--Y~ 98 (258)
T PRK13111 23 PDLETSLEIIKALVEAGADIIEL--GIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMT--YY 98 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE--CCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEe--cc
Confidence 4778888888866554 899998 55542111110 01111 124667778888888 55688976532 11
Q ss_pred cc---ccHHHHHHHHHHcCCcEEEEEc--------------------------cccC-----------------CCCCCC
Q psy7343 283 DV---NKTVEYARMLERAGCQLLAVHG--------------------------RTVD-----------------QRGMNT 316 (487)
Q Consensus 283 d~---~~~~e~a~~le~~G~d~I~Vhg--------------------------Rt~~-----------------~~g~~~ 316 (487)
+. -..+++.+.+.++|+|++.|-. .+.. ..-+.+
T Consensus 99 N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvT 178 (258)
T PRK13111 99 NPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVT 178 (258)
T ss_pred cHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 11 1345666777777777776611 1100 000122
Q ss_pred CC-----CC-HHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 317 GL-----AS-WEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 317 g~-----~~-~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
|. .. .+.++++++..++||+..+||++++++.+++ . +||||.+|++++
T Consensus 179 G~~~~~~~~~~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~-~-~ADGviVGSaiv 232 (258)
T PRK13111 179 GARSADAADLAELVARLKAHTDLPVAVGFGISTPEQAAAIA-A-VADGVIVGSALV 232 (258)
T ss_pred CcccCCCccHHHHHHHHHhcCCCcEEEEcccCCHHHHHHHH-H-hCCEEEEcHHHH
Confidence 22 12 3689999998999999999999999999998 3 499999999876
No 166
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.09 E-value=1e-05 Score=78.59 Aligned_cols=82 Identities=12% Similarity=0.198 Sum_probs=69.8
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCC-CCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTG-LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g-~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
++.++++.+++. ++.+.+-.+... ..| ..+.+.++++.+.+++||++.|||+|.+|+++++ +.|+++|.+|++
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga----~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~-~~G~~~vivGta 104 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGA----FEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAY-EIGVENVIIGTK 104 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcch----hcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHH-HCCCCEEEECch
Confidence 788999999998 999988454322 223 3688999999999999999999999999999999 689999999999
Q ss_pred cccCcccccC
Q psy7343 365 NLYNPALFTG 374 (487)
Q Consensus 365 ~l~~P~lf~~ 374 (487)
++ ||.++++
T Consensus 105 a~-~~~~l~~ 113 (228)
T PRK04128 105 AF-DLEFLEK 113 (228)
T ss_pred hc-CHHHHHH
Confidence 99 9988764
No 167
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=98.08 E-value=6.3e-05 Score=72.08 Aligned_cols=145 Identities=18% Similarity=0.182 Sum_probs=88.3
Q ss_pred CCCeeeeecc-CCHHHHHHHHHhhCCcC--cEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee
Q psy7343 203 DRPLIIQFCG-NDSKNLTEAAKLAEPHC--DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~g-~d~~~~~~aa~~~~~~~--d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR 279 (487)
+..+-.+..| .+.++.+..|+++.+.+ +.| ++-+++. .-.|+.|+-...+-.+.+.+. ++-|.--+
T Consensus 62 ~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wI--------KLEVi~D-~~~L~PD~~etl~Aae~Lv~e-GF~VlPY~- 130 (247)
T PF05690_consen 62 GYTLLPNTAGCRTAEEAVRTARLAREAFGTNWI--------KLEVIGD-DKTLLPDPIETLKAAEILVKE-GFVVLPYC- 130 (247)
T ss_dssp TSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEE--------EE--BS--TTT--B-HHHHHHHHHHHHHT-T-EEEEEE-
T ss_pred CCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeE--------EEEEeCC-CCCcCCChhHHHHHHHHHHHC-CCEEeecC-
Confidence 3445556554 57888888888887762 222 2333332 234455655544444444332 44444332
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
.+-.-+++.|++.||..||--|- .-. .-.|..+...++.+++..++|||..+||.++.|+.+.+ +.|||+|
T Consensus 131 -----~~D~v~akrL~d~GcaavMPlgs-PIG--Sg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AM-ElG~daV 201 (247)
T PF05690_consen 131 -----TDDPVLAKRLEDAGCAAVMPLGS-PIG--SGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAM-ELGADAV 201 (247)
T ss_dssp ------S-HHHHHHHHHTT-SEBEEBSS-STT--T---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHH-HTT-SEE
T ss_pred -----CCCHHHHHHHHHCCCCEEEeccc-ccc--cCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHH-HcCCcee
Confidence 23456789999999999998432 211 23456678899999999999999999999999999999 7999999
Q ss_pred Eecccccc
Q psy7343 360 MTAEGNLY 367 (487)
Q Consensus 360 miGRa~l~ 367 (487)
.+.+++..
T Consensus 202 LvNTAiA~ 209 (247)
T PF05690_consen 202 LVNTAIAK 209 (247)
T ss_dssp EESHHHHT
T ss_pred ehhhHHhc
Confidence 99988643
No 168
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=98.07 E-value=5.3e-06 Score=85.51 Aligned_cols=106 Identities=19% Similarity=0.173 Sum_probs=84.3
Q ss_pred CChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC-
Q psy7343 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT- 332 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~- 332 (487)
.+|-...+.+..+++.+..|++.|+ +.+.+|+ ...-++|+++|.++.....+. -.|.+..+.+.++++.++
T Consensus 201 ~~P~i~ked~~~i~~~~~~~lv~kG-----V~~~~D~-~~a~~tg~~~I~vsnhggrql--D~g~st~~~L~ei~~av~~ 272 (360)
T COG1304 201 SVPVISKEDGAGISKEWAGPLVLKG-----ILAPEDA-AGAGGTGADGIEVSNHGGRQL--DWGISTADSLPEIVEAVGD 272 (360)
T ss_pred CCCcccHHHHhHHHHhcCCcHHHhC-----CCCHHHH-HhhccCCceEEEEEcCCCccc--cCCCChHHHHHHHHHHhCC
Confidence 4667777777788888888999885 4444554 455679999999955444443 346677899999999985
Q ss_pred -CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 333 -IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 333 -iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
++|++.|||++..|+.+++ ..|||+|++||+++..
T Consensus 273 ~~~vi~dGGiR~G~Dv~KAl-ALGA~~v~igrp~L~~ 308 (360)
T COG1304 273 RIEVIADGGIRSGLDVAKAL-ALGADAVGIGRPFLYG 308 (360)
T ss_pred CeEEEecCCCCCHHHHHHHH-HhCCchhhhhHHHHHH
Confidence 9999999999999999999 7999999999977654
No 169
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=98.05 E-value=0.00043 Score=65.99 Aligned_cols=186 Identities=16% Similarity=0.183 Sum_probs=102.8
Q ss_pred cCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEee
Q psy7343 157 VDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDIN 235 (487)
Q Consensus 157 a~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN 235 (487)
.|+++..--..+.+.|++..---+...+.=.-+.+...++.+..+.. .-.|-++ ..+.++..+++..+ ..|+|.||
T Consensus 4 CGi~~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~-~~~V~v~vn~~~~~i~~ia~~~--~~d~Vqlh 80 (203)
T cd00405 4 CGITTLEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPF-VKRVGVFVNEDLEEILEIAEEL--GLDVVQLH 80 (203)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCC-CcEEEEEeCCCHHHHHHHHHhc--CCCEEEEC
Confidence 35555554456677887653211111111111233344444433321 1223333 33455555554432 14555554
Q ss_pred cCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCC
Q psy7343 236 IGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN 315 (487)
Q Consensus 236 ~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~ 315 (487)
+. .+++. ++.+++..+.+++-.+.+. .....+. ......|+|++.+...+....|+.
T Consensus 81 ----------g~------e~~~~----~~~l~~~~~~~~i~~i~~~--~~~~~~~-~~~~~~~aD~il~dt~~~~~~Gg~ 137 (203)
T cd00405 81 ----------GD------ESPEY----CAQLRARLGLPVIKAIRVK--DEEDLEK-AAAYAGEVDAILLDSKSGGGGGGT 137 (203)
T ss_pred ----------CC------CCHHH----HHHHHhhcCCcEEEEEecC--ChhhHHH-hhhccccCCEEEEcCCCCCCCCCC
Confidence 21 12233 3345555566776444332 1112222 233357899999865554433333
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 316 TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 316 ~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
....+|+.+++++ .++|+++.||| |++.+.++++...+++|.+++++...|-.
T Consensus 138 g~~~~~~~l~~~~--~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~ 190 (203)
T cd00405 138 GKTFDWSLLRGLA--SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVETSPGI 190 (203)
T ss_pred cceEChHHhhccc--cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcccCCCCC
Confidence 3356899988876 68999999999 89999999954339999999999888765
No 170
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=98.04 E-value=4e-05 Score=75.11 Aligned_cols=109 Identities=17% Similarity=0.202 Sum_probs=77.5
Q ss_pred ChHHHHHHHHHH-hhhccCcEEEE----e--ec---cccc---ccHH-HHHHHHHHcCCcEEEEEccccCCCCCCCCCCC
Q psy7343 255 DWPLLTNLVSSL-RQAVQVPVSCK----I--RI---YQDV---NKTV-EYARMLERAGCQLLAVHGRTVDQRGMNTGLAS 320 (487)
Q Consensus 255 d~~~i~eiv~~v-~~~~~iPV~vK----i--R~---~~d~---~~~~-e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~ 320 (487)
+++.+.++.+.. .+.+-+-+-+| + ++ ||.. .+.. ++++.+++. +..|.++.-.+.. ....+|
T Consensus 114 ~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~TdI~rDG---tl~G~d 189 (253)
T TIGR02129 114 DLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSKY-CDEFLIHAADVEG---LCKGID 189 (253)
T ss_pred CHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHhh-CCEEEEeeecccC---ccccCC
Confidence 378888888776 34332222222 1 11 2322 2566 889999988 9999995443333 334478
Q ss_pred HHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHh-cCCcEEEecccccc
Q psy7343 321 WEHITAVRKALTIPVIANGNIQCLADVEACLAQ-TGVAGVMTAEGNLY 367 (487)
Q Consensus 321 ~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~-~Gad~VmiGRa~l~ 367 (487)
++.++++.+.+++|||++|||.|.+|+.++.+. .|..++.+|++++.
T Consensus 190 lel~~~l~~~~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 190 EELVSKLGEWSPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred HHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHH
Confidence 999999999999999999999999999988432 36777999998653
No 171
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=98.03 E-value=4.2e-05 Score=72.94 Aligned_cols=134 Identities=22% Similarity=0.377 Sum_probs=96.9
Q ss_pred cCCHHH--HHHHHHhhCCcCcEEEe--ecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc---ccc
Q psy7343 212 GNDSKN--LTEAAKLAEPHCDGIDI--NIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY---QDV 284 (487)
Q Consensus 212 g~d~~~--~~~aa~~~~~~~d~Idi--N~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~---~d~ 284 (487)
|.++.. ..++...+++..|.||+ |.|. .+ -.||+.+.+-+++++++++-++.+|+-+. .+.
T Consensus 72 G~~~t~~K~~Ea~~ai~~GAdEiDmVinig~-----~k-------~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ 139 (228)
T COG0274 72 GANTTAVKAAEAREAIENGADEIDMVINIGA-----LK-------SGNWEAVEREIRAVVEACADAVVLKVILETGLLTD 139 (228)
T ss_pred CCChHHHHHHHHHHHHHcCCCeeeeeeeHHH-----Hh-------cCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCH
Confidence 444433 45555566777888884 5444 12 23899999999999998865567776552 233
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
++...+++...++|+|+|--+ .|+..+.+..+.++-+++.+ ++-|=++|||+|.+|+..++ +.|+..+...
T Consensus 140 ee~~~A~~i~~~aGAdFVKTS------TGf~~~gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i-~aga~RiGtS 212 (228)
T COG0274 140 EEKRKACEIAIEAGADFVKTS------TGFSAGGATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMI-EAGATRIGTS 212 (228)
T ss_pred HHHHHHHHHHHHhCCCEEEcC------CCCCCCCCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHH-HHhHHHhccc
Confidence 455788888999999999542 23356678888888888887 48888999999999999999 6787766655
Q ss_pred cc
Q psy7343 363 EG 364 (487)
Q Consensus 363 Ra 364 (487)
++
T Consensus 213 s~ 214 (228)
T COG0274 213 SG 214 (228)
T ss_pred cH
Confidence 44
No 172
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.02 E-value=3.3e-05 Score=79.52 Aligned_cols=119 Identities=13% Similarity=0.151 Sum_probs=78.5
Q ss_pred hhhcChhHHHHHHh----cCCCCCCeeeeec-------cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccc
Q psy7343 185 QFIADKKLRQEILM----STPEDRPLIIQFC-------GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYL 252 (487)
Q Consensus 185 ~Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~-------g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l 252 (487)
.|.+......++++ ....+.||.+++. |.+.++..++++.+++. .|.|+++.|........+......
T Consensus 194 slenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~ 273 (338)
T cd04733 194 SLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKEST 273 (338)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCc
Confidence 34444555555553 3445679999984 56888888999999887 899999988632111100000000
Q ss_pred cCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 253 ~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
........+..+.+++.+++||++.+ ++.+..++.+.+++.++|.|++ ||.
T Consensus 274 ~~~~~~~~~~~~~ik~~v~iPVi~~G----~i~t~~~a~~~l~~g~aD~V~l-gR~ 324 (338)
T cd04733 274 IAREAYFLEFAEKIRKVTKTPLMVTG----GFRTRAAMEQALASGAVDGIGL-ARP 324 (338)
T ss_pred cccchhhHHHHHHHHHHcCCCEEEeC----CCCCHHHHHHHHHcCCCCeeee-ChH
Confidence 01112234566668888899999997 5567788888888888999999 884
No 173
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.01 E-value=0.00021 Score=70.94 Aligned_cols=138 Identities=15% Similarity=0.169 Sum_probs=93.8
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
.+.||..|=+-.++.+..+ ..+..+|+|-+... .+ +.+.+.++++..++ .+..+.+-+
T Consensus 110 v~iPvl~kdfi~~~~qi~~---a~~~GAD~VlLi~~-------------~l--~~~~l~~li~~a~~-lGl~~lvev--- 167 (260)
T PRK00278 110 VSLPVLRKDFIIDPYQIYE---ARAAGADAILLIVA-------------AL--DDEQLKELLDYAHS-LGLDVLVEV--- 167 (260)
T ss_pred cCCCEEeeeecCCHHHHHH---HHHcCCCEEEEEec-------------cC--CHHHHHHHHHHHHH-cCCeEEEEe---
Confidence 4689998766555543222 22222444433211 11 34677888887765 476666644
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
.+..++ +.+.+.|+|.|.+|+|.... -..+.+.+.++.+.+ .+++|+-|||.|++|+.+++ ..|+|+|
T Consensus 168 ---h~~~E~-~~A~~~gadiIgin~rdl~~-----~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~-~~Gad~v 237 (260)
T PRK00278 168 ---HDEEEL-ERALKLGAPLIGINNRNLKT-----FEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLA-KAGADAV 237 (260)
T ss_pred ---CCHHHH-HHHHHcCCCEEEECCCCccc-----ccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHH-HcCCCEE
Confidence 344444 45667899999998875432 234677788887766 36999999999999999999 6899999
Q ss_pred EeccccccCccc
Q psy7343 360 MTAEGNLYNPAL 371 (487)
Q Consensus 360 miGRa~l~~P~l 371 (487)
.+|++++..++.
T Consensus 238 lVGsaI~~~~dp 249 (260)
T PRK00278 238 LVGESLMRADDP 249 (260)
T ss_pred EECHHHcCCCCH
Confidence 999999987664
No 174
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.99 E-value=2.1e-05 Score=76.31 Aligned_cols=85 Identities=27% Similarity=0.376 Sum_probs=72.0
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
++.++++.+++.|++.+.|........ ....+.+.++++++.+++|+...|||++.+|+++++ +.|||.|++|..+
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~---g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~-~~Ga~~vvlgs~~ 104 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKE---GGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLL-DLGVDRVIIGTAA 104 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccc---CCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHH-HcCCCEEEEChHH
Confidence 789999999999999999954322211 233578999999999999999999999999999999 6899999999999
Q ss_pred ccCcccccC
Q psy7343 366 LYNPALFTG 374 (487)
Q Consensus 366 l~~P~lf~~ 374 (487)
+.||.++.+
T Consensus 105 l~d~~~~~~ 113 (230)
T TIGR00007 105 VENPDLVKE 113 (230)
T ss_pred hhCHHHHHH
Confidence 999987653
No 175
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.98 E-value=2.2e-05 Score=76.93 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=70.6
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.++.+.++.+++.|++.+.|--=.... .....+++.++++.+.+ +|+...|||+|.+|+++++ ..||+.|.+|+.
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~---~g~~~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l-~~Ga~rvvigT~ 104 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAI---ENSVENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLR-KLGYRRQIVSSK 104 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcc---cCCcchHHHHHHHHhhc-CcEEEecCCCCHHHHHHHH-HCCCCEEEECch
Confidence 478999999999999999883322111 12345789999999887 7999999999999999999 789999999999
Q ss_pred cccCcccccC
Q psy7343 365 NLYNPALFTG 374 (487)
Q Consensus 365 ~l~~P~lf~~ 374 (487)
++.||.++++
T Consensus 105 a~~~p~~l~~ 114 (241)
T PRK14114 105 VLEDPSFLKF 114 (241)
T ss_pred hhCCHHHHHH
Confidence 9999987654
No 176
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.98 E-value=0.0001 Score=80.01 Aligned_cols=76 Identities=21% Similarity=0.224 Sum_probs=64.5
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
.+..++++.+++.|+..|.+..-.+. +.....|.++++++++.+++|||++||+.+.+|+.++++.+|+|+++.|.
T Consensus 438 ~~~~~~~~~~~~~Gageil~t~id~D---Gt~~G~d~~l~~~v~~~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~ 513 (538)
T PLN02617 438 IGAYELAKAVEELGAGEILLNCIDCD---GQGKGFDIELVKLVSDAVTIPVIASSGAGTPEHFSDVFSKTNASAALAAG 513 (538)
T ss_pred CCHHHHHHHHHhcCCCEEEEeecccc---ccccCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEe
Confidence 47899999999999999999433222 23344689999999999999999999999999999999778999999884
No 177
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=97.97 E-value=0.00026 Score=67.56 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=58.5
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
++...++...+..|++.|.+-.-. +.....+.+.++++++.+++|++..|||+|.+++++++ ..|||+|.+|
T Consensus 134 e~~~~~a~aa~~~G~~~i~Le~~s-----Ga~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~-~~GAD~VVVG 205 (205)
T TIGR01769 134 EIAAAYCLAAKYFGMKWVYLEAGS-----GASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIV-LAGADAIVTG 205 (205)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCC-----CCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHH-HcCCCEEEeC
Confidence 456777888888999999882211 12223468999999999999999999999999999998 6789999987
No 178
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=97.97 E-value=9.8e-05 Score=69.17 Aligned_cols=104 Identities=14% Similarity=0.207 Sum_probs=74.3
Q ss_pred CChH-HHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEE--EEEccccCCCCCCCCCCCHHHHHHHHhh
Q psy7343 254 DDWP-LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLL--AVHGRTVDQRGMNTGLASWEHITAVRKA 330 (487)
Q Consensus 254 ~d~~-~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I--~VhgRt~~~~g~~~g~~~~~~i~~i~~~ 330 (487)
.+|+ .+.++++..+ ..+.-+.+ |. +..|-...+.+.|+|.| +++|-|.... ....+|++.++++.+
T Consensus 110 ~RP~~~~~~~i~~~k-~~~~l~MA------D~-St~ee~l~a~~~G~D~IGTTLsGYT~~~~--~~~~pDf~lvk~l~~- 178 (229)
T COG3010 110 PRPDGDLEELIARIK-YPGQLAMA------DC-STFEEGLNAHKLGFDIIGTTLSGYTGYTE--KPTEPDFQLVKQLSD- 178 (229)
T ss_pred CCCcchHHHHHHHhh-cCCcEEEe------cc-CCHHHHHHHHHcCCcEEecccccccCCCC--CCCCCcHHHHHHHHh-
Confidence 4566 7788887643 23433444 44 34455567788999988 4445443222 233568999999988
Q ss_pred CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 331 LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 331 ~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
.+.+||+-|.+.|++++++.+ +.||++|.+|.+ +.+|.
T Consensus 179 ~~~~vIAEGr~~tP~~Ak~a~-~~Ga~aVvVGsA-ITRp~ 216 (229)
T COG3010 179 AGCRVIAEGRYNTPEQAKKAI-EIGADAVVVGSA-ITRPE 216 (229)
T ss_pred CCCeEEeeCCCCCHHHHHHHH-HhCCeEEEECcc-cCCHH
Confidence 899999999999999999999 799999999964 44553
No 179
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=97.95 E-value=0.00057 Score=67.30 Aligned_cols=152 Identities=19% Similarity=0.227 Sum_probs=98.7
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEee--cCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDIN--IGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR 279 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN--~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR 279 (487)
...|+.||+--+|+.....+|.... .+.|.+| .|. ..+-. +....+...+.+.-+.+. .++.|...++
T Consensus 78 ~~~p~GvnvL~nd~~aal~iA~a~g--a~FIRv~~~~g~--~~~d~----G~~~~~a~e~~r~r~~l~--~~v~i~adV~ 147 (257)
T TIGR00259 78 VSIPLGINVLRNDAVAALAIAMAVG--AKFIRVNVLTGV--YASDQ----GIIEGNAGELIRYKKLLG--SEVKILADIV 147 (257)
T ss_pred cCCCeeeeeecCCCHHHHHHHHHhC--CCEEEEccEeee--Eeccc----ccccccHHHHHHHHHHcC--CCcEEEecee
Confidence 3569999988778766666555443 3445444 222 11111 122334445555444444 2566766654
Q ss_pred c--cc--ccccHHHHHHHHHHcC-CcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHh
Q psy7343 280 I--YQ--DVNKTVEYARMLERAG-CQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQ 353 (487)
Q Consensus 280 ~--~~--d~~~~~e~a~~le~~G-~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~ 353 (487)
. +. ...+..+.++.....| +|+|+|+|.+.. ...+|+.++++++.. +.||+.+|||+ ++.+.++++.
T Consensus 148 ~kh~~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG------~~~d~~~l~~vr~~~~~~PvllggGvt-~eNv~e~l~~ 220 (257)
T TIGR00259 148 VKHAVHLGNRDLESIALDTVERGLADAVILSGKTTG------TEVDLELLKLAKETVKDTPVLAGSGVN-LENVEELLSI 220 (257)
T ss_pred ecccCcCCCCCHHHHHHHHHHhcCCCEEEECcCCCC------CCCCHHHHHHHHhccCCCeEEEECCCC-HHHHHHHHhh
Confidence 3 11 2346777777766666 999999776422 246899999999865 79999999995 7889999853
Q ss_pred cCCcEEEeccccccCccccc
Q psy7343 354 TGVAGVMTAEGNLYNPALFT 373 (487)
Q Consensus 354 ~Gad~VmiGRa~l~~P~lf~ 373 (487)
+||+.+|+++- +|..+.
T Consensus 221 --adGviVgS~~K-~~G~~~ 237 (257)
T TIGR00259 221 --ADGVIVATTIK-KDGVFN 237 (257)
T ss_pred --CCEEEECCCcc-cCCccC
Confidence 99999999977 555444
No 180
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=97.94 E-value=0.00034 Score=66.31 Aligned_cols=141 Identities=18% Similarity=0.251 Sum_probs=90.7
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~ 282 (487)
+.|+.+-+.-.++... .++.+.++ |+ ..++.|+.. .++...++++.+++ .++++.+-+ .
T Consensus 53 ~~~i~~~~~v~~~~~~--~~~~~~~a--------Ga-d~i~~h~~~------~~~~~~~~i~~~~~-~g~~~~v~~---~ 111 (202)
T cd04726 53 DKIIVADLKTADAGAL--EAEMAFKA--------GA-DIVTVLGAA------PLSTIKKAVKAAKK-YGKEVQVDL---I 111 (202)
T ss_pred CCEEEEEEEeccccHH--HHHHHHhc--------CC-CEEEEEeeC------CHHHHHHHHHHHHH-cCCeEEEEE---e
Confidence 5778775443344321 22333344 33 345555531 23456667777765 377776531 1
Q ss_pred ccccHHHHHHHHHHcCCcEEEEE-ccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVH-GRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~Vh-gRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
+..+..+..+ +...|+|.+.++ +++.... .+....+.++++++..++|+++.|||+ .+++.+++ +.|+|++.+
T Consensus 112 ~~~t~~e~~~-~~~~~~d~v~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~i~~~GGI~-~~~i~~~~-~~Gad~vvv 185 (202)
T cd04726 112 GVEDPEKRAK-LLKLGVDIVILHRGIDAQAA---GGWWPEDDLKKVKKLLGVKVAVAGGIT-PDTLPEFK-KAGADIVIV 185 (202)
T ss_pred CCCCHHHHHH-HHHCCCCEEEEcCccccccc---CCCCCHHHHHHHHhhcCCCEEEECCcC-HHHHHHHH-hcCCCEEEE
Confidence 4456667666 667899999884 3322221 123456888888877789999999995 99999999 789999999
Q ss_pred ccccccCcc
Q psy7343 362 AEGNLYNPA 370 (487)
Q Consensus 362 GRa~l~~P~ 370 (487)
|+++....+
T Consensus 186 Gsai~~~~d 194 (202)
T cd04726 186 GRAITGAAD 194 (202)
T ss_pred eehhcCCCC
Confidence 999875443
No 181
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=97.94 E-value=0.00082 Score=66.96 Aligned_cols=90 Identities=18% Similarity=0.239 Sum_probs=66.6
Q ss_pred ccCcEEEEeec-c------cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCC
Q psy7343 270 VQVPVSCKIRI-Y------QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQ 342 (487)
Q Consensus 270 ~~iPV~vKiR~-~------~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~ 342 (487)
.++|+.+.... | .+.+.....++...+.|+|.|-.. +.+ +.+.++++.+..++||++.|||+
T Consensus 138 ~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~---------~~~--~~~~l~~~~~~~~ipV~a~GGi~ 206 (267)
T PRK07226 138 WGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTN---------YTG--DPESFREVVEGCPVPVVIAGGPK 206 (267)
T ss_pred cCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeC---------CCC--CHHHHHHHHHhCCCCEEEEeCCC
Confidence 48898885321 1 112234455677888999999662 222 56788888888899999999999
Q ss_pred --CHHHHHHHHH---hcCCcEEEeccccccCcc
Q psy7343 343 --CLADVEACLA---QTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 343 --s~~da~~~l~---~~Gad~VmiGRa~l~~P~ 370 (487)
|.+++.++++ +.||+|+.+||.++..++
T Consensus 207 ~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~ 239 (267)
T PRK07226 207 TDTDREFLEMVRDAMEAGAAGVAVGRNVFQHED 239 (267)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCC
Confidence 8888888753 589999999999987765
No 182
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.93 E-value=2.4e-05 Score=78.95 Aligned_cols=116 Identities=15% Similarity=0.051 Sum_probs=74.5
Q ss_pred hhhcChhHHHHHHhc--CCCCCCeeeeec-cCCHHHHHHHHHhhCCc---CcEEEe----------ec--CCCcceeecc
Q psy7343 185 QFIADKKLRQEILMS--TPEDRPLIIQFC-GNDSKNLTEAAKLAEPH---CDGIDI----------NI--GCPQMVAKRG 246 (487)
Q Consensus 185 ~Ll~~~~~~~~~l~~--~~~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~---~d~Idi----------N~--GcP~~i~~~g 246 (487)
.+..+++...++++. ...+.||+|||+ ..|.+++.++++.+.+. .|+|-+ |. +.|. ...+.
T Consensus 137 ~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~-~~~~~ 215 (294)
T cd04741 137 PPAYDFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVV-LKPKT 215 (294)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcc-cCCCC
Confidence 455678888888862 334689999999 45667788888877554 455442 21 1111 00011
Q ss_pred Cccc-cccC-ChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 247 HYGA-YLQD-DWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 247 r~G~-~l~~-d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
.+|+ .... +|. ..+.+..+++.+ ++||++++ ++.+..++.+.+. +|||+|+| ++.
T Consensus 216 ~~gG~SG~~i~~~-al~~v~~~~~~~~~~ipIig~G----GI~s~~da~e~l~-aGA~~Vqv-~ta 274 (294)
T cd04741 216 GFGGLAGAYLHPL-ALGNVRTFRRLLPSEIQIIGVG----GVLDGRGAFRMRL-AGASAVQV-GTA 274 (294)
T ss_pred CCCCcCchhhHHH-HHHHHHHHHHhcCCCCCEEEeC----CCCCHHHHHHHHH-cCCCceeE-chh
Confidence 1221 1111 233 334556677777 49999998 8889999999997 89999999 664
No 183
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=97.92 E-value=0.0003 Score=69.84 Aligned_cols=133 Identities=18% Similarity=0.153 Sum_probs=96.5
Q ss_pred CCCeeeeeccCCHHHHHHHHHhh-CCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEee
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~-~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR 279 (487)
..|+...+...+++++.+.++.+ ++.+..+.+++|- +++.-.+.++++++.+ ++++.+...
T Consensus 74 ~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~----------------~~~~d~~~v~~vr~~~g~~~~l~vDan 137 (265)
T cd03315 74 RVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVGR----------------DPARDVAVVAALREAVGDDAELRVDAN 137 (265)
T ss_pred ceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecCC----------------CHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 45666666555777776655544 4446666555431 3445556777788776 455666555
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
-+++.++..++++.+++.|++.|-- + +. ..+++..+++++.+++||.+.+.+.+..++.++++..++|.|
T Consensus 138 ~~~~~~~a~~~~~~l~~~~i~~iEe-P--------~~-~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v 207 (265)
T cd03315 138 RGWTPKQAIRALRALEDLGLDYVEQ-P--------LP-ADDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAV 207 (265)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEEC-C--------CC-cccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEE
Confidence 5677788899999999999988853 1 21 246888999999999999999999999999999977789988
Q ss_pred Ee
Q psy7343 360 MT 361 (487)
Q Consensus 360 mi 361 (487)
++
T Consensus 208 ~~ 209 (265)
T cd03315 208 NI 209 (265)
T ss_pred EE
Confidence 75
No 184
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=97.89 E-value=4.8e-05 Score=73.51 Aligned_cols=86 Identities=29% Similarity=0.421 Sum_probs=72.7
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+++.+.++.+.+.|+..+++--=. ...-.++.+.+.++++.+.+++||-..|||+|.+++++++ +.|++.|.+|+.
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVDLd---gA~~g~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll-~~G~~rViiGt~ 106 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVDLD---GAKAGGPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALL-DAGVARVIIGTA 106 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEEeecc---ccccCCcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHH-HCCCCEEEEecc
Confidence 478999999999999999883211 1111345578999999999999999999999999999999 699999999999
Q ss_pred cccCcccccC
Q psy7343 365 NLYNPALFTG 374 (487)
Q Consensus 365 ~l~~P~lf~~ 374 (487)
++.||.++.+
T Consensus 107 av~~p~~v~~ 116 (241)
T COG0106 107 AVKNPDLVKE 116 (241)
T ss_pred eecCHHHHHH
Confidence 9999999764
No 185
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.87 E-value=0.00062 Score=66.99 Aligned_cols=167 Identities=17% Similarity=0.190 Sum_probs=101.3
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec--
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI-- 280 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~-- 280 (487)
+.|+.||+--+|+.....+|.... .|.|.+|.=|=..++-. +.+..+...+.+.-+.+.. ++.|...+..
T Consensus 80 ~~p~GVnvL~nd~~aalaiA~A~g--a~FIRv~~~~g~~~~d~----G~~~~~a~e~~r~R~~l~a--~v~ilaDV~~kh 151 (254)
T PF03437_consen 80 SVPVGVNVLRNDPKAALAIAAATG--ADFIRVNVFVGAYVTDE----GIIEGCAGELLRYRKRLGA--DVKILADVHVKH 151 (254)
T ss_pred CCCEEeeeecCCCHHHHHHHHHhC--CCEEEecCEEceecccC----ccccccHHHHHHHHHHcCC--CeEEEeeechhh
Confidence 689999988777766555555443 34454442220111111 1222333444443333322 3566665543
Q ss_pred c--cccccHHHHHHHH-HHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCc
Q psy7343 281 Y--QDVNKTVEYARML-ERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVA 357 (487)
Q Consensus 281 ~--~d~~~~~e~a~~l-e~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad 357 (487)
+ -...+..+.++.. +..++|+|+|+|... ..+++.+.++++++.+++||+.++|+ |.+.+.++++ -||
T Consensus 152 ~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~T------G~~~~~~~l~~vr~~~~~PVlvGSGv-t~~Ni~~~l~--~AD 222 (254)
T PF03437_consen 152 SSPLATRDLEEAAKDAVERGGADAVIVTGKAT------GEPPDPEKLKRVREAVPVPVLVGSGV-TPENIAEYLS--YAD 222 (254)
T ss_pred cccCCCCCHHHHHHHHHHhcCCCEEEECCccc------CCCCCHHHHHHHHhcCCCCEEEecCC-CHHHHHHHHH--hCC
Confidence 1 1223455555544 778999999976532 22468899999999999999998888 4788988883 399
Q ss_pred EEEeccccccCcccccCCCCCcHHHHHHHHHH
Q psy7343 358 GVMTAEGNLYNPALFTGQTRPAWELASEYLDL 389 (487)
Q Consensus 358 ~VmiGRa~l~~P~lf~~~~~~~~~~~~~~l~~ 389 (487)
|+.||+.+-.|-.+..... .+-+++|.+.
T Consensus 223 G~IVGS~~K~~G~~~n~VD---~~Rv~~fm~~ 251 (254)
T PF03437_consen 223 GAIVGSYFKKDGKWENPVD---PERVRRFMEA 251 (254)
T ss_pred EEEEeeeeeeCCEeCCcCC---HHHHHHHHHH
Confidence 9999998777666554332 2444554443
No 186
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=97.87 E-value=2.9e-05 Score=79.90 Aligned_cols=125 Identities=18% Similarity=0.220 Sum_probs=79.4
Q ss_pred hhcChhHHHHHHh--cCCCCCCeeeeec-------cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCC
Q psy7343 186 FIADKKLRQEILM--STPEDRPLIIQFC-------GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDD 255 (487)
Q Consensus 186 Ll~~~~~~~~~l~--~~~~~~Pv~Vqi~-------g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d 255 (487)
|.+......++++ +...+.||+++|. |.+.++..++++.+++. +|.|+++.|.... .....+.+ .+
T Consensus 188 lenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~-~~~~~~~~---~~ 263 (337)
T PRK13523 188 PENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVP-ARIDVYPG---YQ 263 (337)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CCCCCCcc---cc
Confidence 3333444445553 1122579999987 34678889999988876 8999999886211 01010111 13
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL 331 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~ 331 (487)
++ +.+.+++.+++||++.+ ++.+..++.+.+++.++|.|++ ||... ++-+++.++++.+
T Consensus 264 ~~----~~~~ik~~~~ipVi~~G----~i~~~~~a~~~l~~g~~D~V~~-gR~~i--------adP~~~~k~~~~~ 322 (337)
T PRK13523 264 VP----FAEHIREHANIATGAVG----LITSGAQAEEILQNNRADLIFI-GRELL--------RNPYFPRIAAKEL 322 (337)
T ss_pred HH----HHHHHHhhcCCcEEEeC----CCCCHHHHHHHHHcCCCChHHh-hHHHH--------hCccHHHHHHHHc
Confidence 33 44557777899999998 5556777777777777999999 88432 2334566666654
No 187
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=97.86 E-value=0.00019 Score=74.37 Aligned_cols=140 Identities=19% Similarity=0.198 Sum_probs=102.7
Q ss_pred CCCeeeeeccC--CHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEE
Q psy7343 203 DRPLIIQFCGN--DSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCK 277 (487)
Q Consensus 203 ~~Pv~Vqi~g~--d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vK 277 (487)
..|+...+... +++++.+.++.+.+. ++.+.|+.|..... .++++...++++++++.+ ++++.+.
T Consensus 126 ~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~----------~~~~~~d~~~v~~ir~~~g~~~~l~vD 195 (357)
T cd03316 126 RVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSG----------GEDLREDLARVRAVREAVGPDVDLMVD 195 (357)
T ss_pred ceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcc----------hHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 45666655433 588888777765444 88888887752111 045677788888898887 4667766
Q ss_pred eecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCc
Q psy7343 278 IRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVA 357 (487)
Q Consensus 278 iR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad 357 (487)
..-+++.++..++++.+++.|++.|.- + . ...+++..+++++.+++||++.+.+.+++|+.++++...+|
T Consensus 196 aN~~~~~~~a~~~~~~l~~~~i~~iEq--------P-~-~~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d 265 (357)
T cd03316 196 ANGRWDLAEAIRLARALEEYDLFWFEE--------P-V-PPDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVD 265 (357)
T ss_pred CCCCCCHHHHHHHHHHhCccCCCeEcC--------C-C-CccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCC
Confidence 544677778888889998888877642 1 1 12368889999999999999999999999999999777788
Q ss_pred EEEec
Q psy7343 358 GVMTA 362 (487)
Q Consensus 358 ~VmiG 362 (487)
.|.+-
T Consensus 266 ~v~~k 270 (357)
T cd03316 266 IIQPD 270 (357)
T ss_pred EEecC
Confidence 88653
No 188
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=97.85 E-value=6.1e-05 Score=74.18 Aligned_cols=80 Identities=15% Similarity=0.151 Sum_probs=68.5
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.++.+.|+.+++.|+++++|--= .. ..+.+.+.++++++ +++||-..|||++ +++++++ +.||+.|++|+.
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDL---dg---g~~~n~~~i~~i~~-~~~~vqvGGGIR~-e~i~~~l-~~Ga~rViigT~ 113 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIML---GA---DDASLAAALEALRA-YPGGLQVGGGVNS-ENAMSYL-DAGASHVIVTSY 113 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEEC---CC---CCcccHHHHHHHHh-CCCCEEEeCCccH-HHHHHHH-HcCCCEEEEchH
Confidence 48999999999999999988322 11 22456899999999 8899999999996 9999999 799999999999
Q ss_pred cccC----ccccc
Q psy7343 365 NLYN----PALFT 373 (487)
Q Consensus 365 ~l~~----P~lf~ 373 (487)
++.| |.+++
T Consensus 114 Av~~~~~~p~~v~ 126 (262)
T PLN02446 114 VFRDGQIDLERLK 126 (262)
T ss_pred HHhCCCCCHHHHH
Confidence 9999 87765
No 189
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=97.85 E-value=0.00069 Score=66.69 Aligned_cols=151 Identities=22% Similarity=0.182 Sum_probs=97.1
Q ss_pred CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCc------cccc--cCChHHHHHHHHHHhhh-ccCcEEEEeeccc
Q psy7343 213 NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHY------GAYL--QDDWPLLTNLVSSLRQA-VQVPVSCKIRIYQ 282 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~------G~~l--~~d~~~i~eiv~~v~~~-~~iPV~vKiR~~~ 282 (487)
.+.+...++++.+.+. .|.||| |.|..-..-++. --+| .-..+.+.++++.+++. .++|+++=+=.+.
T Consensus 28 P~~e~s~e~i~~L~~~GaD~iEL--GvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Np 105 (265)
T COG0159 28 PDLETSLEIIKTLVEAGADILEL--GVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNP 105 (265)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEe--cCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccH
Confidence 4788999999976665 999998 665422111100 0011 13567788899999854 6889887431111
Q ss_pred -ccccHHHHHHHHHHcCCcEEEE-----------------Ec--------cc-c--------C---------CCCCCCCC
Q psy7343 283 -DVNKTVEYARMLERAGCQLLAV-----------------HG--------RT-V--------D---------QRGMNTGL 318 (487)
Q Consensus 283 -d~~~~~e~a~~le~~G~d~I~V-----------------hg--------Rt-~--------~---------~~g~~~g~ 318 (487)
-..-.+++.+.+.++|+|++.| || -| . . ...+.+|.
T Consensus 106 i~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~ 185 (265)
T COG0159 106 IFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGA 185 (265)
T ss_pred HHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCC
Confidence 0013455677777777777766 11 00 0 0 01112221
Q ss_pred C------CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 319 A------SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 319 ~------~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
. --+.++++|+..++||...=||+++++++++. +. ||||.+|+++..
T Consensus 186 ~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~-~~-ADGVIVGSAiV~ 238 (265)
T COG0159 186 RNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVA-EA-ADGVIVGSAIVK 238 (265)
T ss_pred CcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHH-Hh-CCeEEEcHHHHH
Confidence 1 13778899999999999999999999999999 45 999999997653
No 190
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.85 E-value=0.00015 Score=69.16 Aligned_cols=141 Identities=22% Similarity=0.243 Sum_probs=94.1
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeec-
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRI- 280 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~- 280 (487)
..|++|- .......++.+++....|-|-||-.. ..||+++.++-+..-..+ -+-|-+|-+.
T Consensus 74 fiPltVG---GGI~s~eD~~~ll~aGADKVSINsaA--------------v~~p~lI~~~a~~FGsQciVvaIDakr~~~ 136 (256)
T COG0107 74 FIPLTVG---GGIRSVEDARKLLRAGADKVSINSAA--------------VKDPELITEAADRFGSQCIVVAIDAKRVPD 136 (256)
T ss_pred eeeeEec---CCcCCHHHHHHHHHcCCCeeeeChhH--------------hcChHHHHHHHHHhCCceEEEEEEeeeccC
Confidence 4566653 22333444556666667777777333 357888887666543322 1122223221
Q ss_pred -----------cc---ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHH
Q psy7343 281 -----------YQ---DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLAD 346 (487)
Q Consensus 281 -----------~~---d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~d 346 (487)
++ ...+..++++..++.|+-.|.+.. ..+.+....-|.+.++.+++.+++|||++||.-++++
T Consensus 137 g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLts---mD~DGtk~GyDl~l~~~v~~~v~iPvIASGGaG~~eh 213 (256)
T COG0107 137 GENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTS---MDRDGTKAGYDLELTRAVREAVNIPVIASGGAGKPEH 213 (256)
T ss_pred CCCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEee---ecccccccCcCHHHHHHHHHhCCCCEEecCCCCcHHH
Confidence 01 123789999999999999998832 2222233335899999999999999999999999999
Q ss_pred HHHHHHhcCCcEEEecc
Q psy7343 347 VEACLAQTGVAGVMTAE 363 (487)
Q Consensus 347 a~~~l~~~Gad~VmiGR 363 (487)
+.+.+.++.||++..+.
T Consensus 214 f~eaf~~~~adAaLAAs 230 (256)
T COG0107 214 FVEAFTEGKADAALAAS 230 (256)
T ss_pred HHHHHHhcCccHHHhhh
Confidence 99999777799887664
No 191
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.82 E-value=7.2e-05 Score=73.36 Aligned_cols=73 Identities=16% Similarity=0.141 Sum_probs=65.0
Q ss_pred cH-HHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 286 KT-VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 286 ~~-~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+. .+.++.+++.|++.++|-. + |..+.+.++++.+.+++||...|||++ +++++++ +.||+.|.+|+.
T Consensus 38 ~pp~~~A~~~~~~Ga~~lHvVD--------L-g~~n~~~i~~i~~~~~~~v~vGGGIr~-e~v~~~l-~aGa~rVvIGS~ 106 (253)
T TIGR02129 38 KPSSYYAKLYKDDGVKGCHVIM--------L-GPNNDDAAKEALHAYPGGLQVGGGIND-TNAQEWL-DEGASHVIVTSW 106 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEE--------C-CCCcHHHHHHHHHhCCCCEEEeCCcCH-HHHHHHH-HcCCCEEEECcH
Confidence 34 8999999999999999832 2 334899999999999999999999998 9999999 799999999999
Q ss_pred cccCc
Q psy7343 365 NLYNP 369 (487)
Q Consensus 365 ~l~~P 369 (487)
++.||
T Consensus 107 av~~~ 111 (253)
T TIGR02129 107 LFTKG 111 (253)
T ss_pred HHhCC
Confidence 99984
No 192
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.82 E-value=1.9e-05 Score=76.85 Aligned_cols=86 Identities=23% Similarity=0.365 Sum_probs=69.7
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.++.+.++.+++.|++.+.|.-=.+.. .....+++.++++.+.+.+||.+.|||+|.+|+++++ +.||+.|.+|+.
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~---~g~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll-~~Ga~~Vvigt~ 104 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAK---EGRGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLL-DAGADRVVIGTE 104 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHC---CTHHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHH-HTT-SEEEESHH
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcc---cCchhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHH-HhCCCEEEeChH
Confidence 478999999999999999984322111 1123578999999999999999999999999999999 789999999999
Q ss_pred cccCcccccC
Q psy7343 365 NLYNPALFTG 374 (487)
Q Consensus 365 ~l~~P~lf~~ 374 (487)
++.||.++.+
T Consensus 105 ~~~~~~~l~~ 114 (229)
T PF00977_consen 105 ALEDPELLEE 114 (229)
T ss_dssp HHHCCHHHHH
T ss_pred HhhchhHHHH
Confidence 9999998764
No 193
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.81 E-value=0.00041 Score=67.54 Aligned_cols=90 Identities=19% Similarity=0.264 Sum_probs=67.0
Q ss_pred hccCcEEEEeeccc-------ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCC
Q psy7343 269 AVQVPVSCKIRIYQ-------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNI 341 (487)
Q Consensus 269 ~~~iPV~vKiR~~~-------d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI 341 (487)
..++|+++.....+ +.++....++...+.|+|.|-+. ++ .+.+.++++.+..++||++.||+
T Consensus 120 ~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~---------~~--~~~~~~~~i~~~~~~pvv~~GG~ 188 (235)
T cd00958 120 KYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTK---------YT--GDAESFKEVVEGCPVPVVIAGGP 188 (235)
T ss_pred HcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEec---------CC--CCHHHHHHHHhcCCCCEEEeCCC
Confidence 35899999865410 11233444677888999999882 11 25788999999999999998987
Q ss_pred --CCHHH----HHHHHHhcCCcEEEeccccccCcc
Q psy7343 342 --QCLAD----VEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 342 --~s~~d----a~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
.|.+| +.+++ +.|+++|.+||.++..++
T Consensus 189 ~~~~~~~~l~~~~~~~-~~Ga~gv~vg~~i~~~~d 222 (235)
T cd00958 189 KKDSEEEFLKMVYDAM-EAGAAGVAVGRNIFQRPD 222 (235)
T ss_pred CCCCHHHHHHHHHHHH-HcCCcEEEechhhhcCCC
Confidence 67766 56667 699999999999997764
No 194
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.81 E-value=0.001 Score=65.87 Aligned_cols=103 Identities=17% Similarity=0.268 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHhhh---ccCcEEEEee-----ccc-ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHH
Q psy7343 256 WPLLTNLVSSLRQA---VQVPVSCKIR-----IYQ-DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITA 326 (487)
Q Consensus 256 ~~~i~eiv~~v~~~---~~iPV~vKiR-----~~~-d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~ 326 (487)
++.+ +.++++++. .++|+++..- ++. +.+...+.++...+.|+|+|-+. +. .+.+.+++
T Consensus 119 ~~~~-~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~---------~~--~~~~~l~~ 186 (258)
T TIGR01949 119 WEQI-RDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTP---------YT--GDIDSFRD 186 (258)
T ss_pred HHHH-HHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEecc---------CC--CCHHHHHH
Confidence 3444 334444443 4789888432 111 12233444677788999999872 11 25788999
Q ss_pred HHhhCCCcEEEcCCCC--CHHHHHHHHH---hcCCcEEEeccccccCcc
Q psy7343 327 VRKALTIPVIANGNIQ--CLADVEACLA---QTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 327 i~~~~~iPVi~nGgI~--s~~da~~~l~---~~Gad~VmiGRa~l~~P~ 370 (487)
+.+..++||++.|||+ |.+++.+.++ +.|++|+.+||.++..++
T Consensus 187 ~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~d 235 (258)
T TIGR01949 187 VVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDD 235 (258)
T ss_pred HHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCC
Confidence 9988899999999999 6665554442 689999999999987765
No 195
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.80 E-value=4.8e-05 Score=82.55 Aligned_cols=87 Identities=16% Similarity=0.205 Sum_probs=70.2
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCH-----------HHHHHHH
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCL-----------ADVEACL 351 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~-----------~da~~~l 351 (487)
+..++.++++.+++.|+|.|++-.=+....+......+++.++++.+.+.+|+.+.|||+|. +++++++
T Consensus 265 ~~gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l 344 (538)
T PLN02617 265 NLGKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYF 344 (538)
T ss_pred cCCCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHH
Confidence 34589999999999999999885443321111222345899999999999999999999998 6689999
Q ss_pred HhcCCcEEEeccccccCcc
Q psy7343 352 AQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 352 ~~~Gad~VmiGRa~l~~P~ 370 (487)
..|||-|.||++++.||.
T Consensus 345 -~~GadkV~i~s~Av~~~~ 362 (538)
T PLN02617 345 -RSGADKISIGSDAVYAAE 362 (538)
T ss_pred -HcCCCEEEEChHHHhChh
Confidence 799999999999999873
No 196
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=97.80 E-value=0.00014 Score=71.89 Aligned_cols=150 Identities=20% Similarity=0.190 Sum_probs=93.8
Q ss_pred CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccC------ccccc--cCChHHHHHHHHHHh-hhccCcEEEEeeccc
Q psy7343 213 NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGH------YGAYL--QDDWPLLTNLVSSLR-QAVQVPVSCKIRIYQ 282 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr------~G~~l--~~d~~~i~eiv~~v~-~~~~iPV~vKiR~~~ 282 (487)
.|.+.+.++++.+.+. +|.||| |-|.....-++ .-.+| --+.+.+.++++.++ +..++|+++=.=.+
T Consensus 21 P~~~~~~~~~~~l~~~GaD~iEi--GiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N- 97 (259)
T PF00290_consen 21 PDLETTLEILKALEEAGADIIEI--GIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYN- 97 (259)
T ss_dssp SSHHHHHHHHHHHHHTTBSSEEE--E--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HH-
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE--CCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeecc-
Confidence 4678899999887775 899988 44432111110 00011 135778888899999 77789998854111
Q ss_pred cc--ccHHHHHHHHHHcCCcEEEEEc--------------------------cccC-----------------CCCCCCC
Q psy7343 283 DV--NKTVEYARMLERAGCQLLAVHG--------------------------RTVD-----------------QRGMNTG 317 (487)
Q Consensus 283 d~--~~~~e~a~~le~~G~d~I~Vhg--------------------------Rt~~-----------------~~g~~~g 317 (487)
.+ ...+++.+.+.++|+|+++|-. -|.. ...+.+|
T Consensus 98 ~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG 177 (259)
T PF00290_consen 98 PIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTG 177 (259)
T ss_dssp HHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSS
T ss_pred HHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCC
Confidence 11 1245667777777777776611 0100 1112233
Q ss_pred CC------CHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 318 LA------SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 318 ~~------~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
.. .-+.++++|+..+.||...=||++++++.++. .|||||.||++++.
T Consensus 178 ~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~--~~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 178 SRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA--AGADGVIVGSAFVK 231 (259)
T ss_dssp TTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH--TTSSEEEESHHHHH
T ss_pred CcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH--ccCCEEEECHHHHH
Confidence 22 13788899999999999999999999999988 78999999997654
No 197
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=97.80 E-value=0.0001 Score=75.82 Aligned_cols=112 Identities=23% Similarity=0.283 Sum_probs=74.5
Q ss_pred hhhcChhHHHHHHh----cCCCCCCeeeeec-------cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccc
Q psy7343 185 QFIADKKLRQEILM----STPEDRPLIIQFC-------GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYL 252 (487)
Q Consensus 185 ~Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~-------g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l 252 (487)
.|.++.+...++++ ....+.||.+++. +.+.++..++++.+++. .|.|+++.|....... . ..
T Consensus 199 sl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~-~----~~ 273 (336)
T cd02932 199 SLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQK-I----PV 273 (336)
T ss_pred CHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccc-c----CC
Confidence 44455555555553 3445789999976 34678888999988876 8999998775211100 0 00
Q ss_pred cCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 253 ~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
. +....+..+.+++.+++||++.+ ++.+..++.+.+++..+|.|++ ||.
T Consensus 274 ~--~~~~~~~~~~ir~~~~iPVi~~G----~i~t~~~a~~~l~~g~aD~V~~-gR~ 322 (336)
T cd02932 274 G--PGYQVPFAERIRQEAGIPVIAVG----LITDPEQAEAILESGRADLVAL-GRE 322 (336)
T ss_pred C--ccccHHHHHHHHhhCCCCEEEeC----CCCCHHHHHHHHHcCCCCeehh-hHH
Confidence 0 11112445567778899999997 5667788888888777999999 884
No 198
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.79 E-value=0.0011 Score=64.43 Aligned_cols=142 Identities=13% Similarity=0.183 Sum_probs=87.1
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
.+.++.+.+.-.+++++.+.+..+ .+|+|-+|.|- ...+...+.++.+++. +.-+.+-+
T Consensus 64 ~~~~~~vhlmv~~p~d~~~~~~~~--gad~v~vH~~q---------------~~~d~~~~~~~~i~~~-g~~iGls~--- 122 (229)
T PLN02334 64 TDAPLDCHLMVTNPEDYVPDFAKA--GASIFTFHIEQ---------------ASTIHLHRLIQQIKSA-GMKAGVVL--- 122 (229)
T ss_pred CCCcEEEEeccCCHHHHHHHHHHc--CCCEEEEeecc---------------ccchhHHHHHHHHHHC-CCeEEEEE---
Confidence 345677888877898888776332 35566555541 0112334445555432 33333332
Q ss_pred cccccHHHHHHHHHHcC-CcEEEE---EccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCC
Q psy7343 282 QDVNKTVEYARMLERAG-CQLLAV---HGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGV 356 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G-~d~I~V---hgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Ga 356 (487)
...+..+.++.+.+.| +|.|.+ +..+..+. ..+...+.++++++.. ++||.+-||| +.+++.++. +.|+
T Consensus 123 -~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~---~~~~~~~~i~~~~~~~~~~~I~a~GGI-~~e~i~~l~-~aGa 196 (229)
T PLN02334 123 -NPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQS---FIPSMMDKVRALRKKYPELDIEVDGGV-GPSTIDKAA-EAGA 196 (229)
T ss_pred -CCCCCHHHHHHHHhccCCCEEEEEEEecCCCccc---cCHHHHHHHHHHHHhCCCCcEEEeCCC-CHHHHHHHH-HcCC
Confidence 2224456666565554 999965 22211111 1122346777887764 6899999999 689999999 7999
Q ss_pred cEEEeccccccCcc
Q psy7343 357 AGVMTAEGNLYNPA 370 (487)
Q Consensus 357 d~VmiGRa~l~~P~ 370 (487)
|++.+|++++..++
T Consensus 197 d~vvvgsai~~~~d 210 (229)
T PLN02334 197 NVIVAGSAVFGAPD 210 (229)
T ss_pred CEEEEChHHhCCCC
Confidence 99999999876654
No 199
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.78 E-value=8.2e-05 Score=72.55 Aligned_cols=84 Identities=17% Similarity=0.076 Sum_probs=69.6
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
++.+.++.+.+.|++.+.|-.=... .....+.+.++++.+....|+...|||+|.+|+++++ +.||+.|.+|+.+
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a----~~~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l-~~Ga~kvvigt~a 105 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAA----EGVGNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLL-SLDVNALVFSTIV 105 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCc----CCCcchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHH-HCCCCEEEECchh
Confidence 7899999999999999998332111 1234567999999885445999999999999999999 7899999999999
Q ss_pred ccCcccccC
Q psy7343 366 LYNPALFTG 374 (487)
Q Consensus 366 l~~P~lf~~ 374 (487)
+.||.++++
T Consensus 106 ~~~p~~~~~ 114 (232)
T PRK13586 106 FTNFNLFHD 114 (232)
T ss_pred hCCHHHHHH
Confidence 999998764
No 200
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=97.77 E-value=0.00077 Score=64.09 Aligned_cols=141 Identities=13% Similarity=0.170 Sum_probs=80.5
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
+.|+.+-+..+|+.++.+.+. +. .|+|-+| +. .. +...+.++.+++ .++.+.+-+
T Consensus 57 ~~~~~v~l~~~d~~~~~~~~~---~~g~dgv~vh----------~~------~~-~~~~~~~~~~~~-~~~~~g~~~--- 112 (211)
T cd00429 57 DLPLDVHLMVENPERYIEAFA---KAGADIITFH----------AE------AT-DHLHRTIQLIKE-LGMKAGVAL--- 112 (211)
T ss_pred CCcEEEEeeeCCHHHHHHHHH---HcCCCEEEEC----------cc------ch-hhHHHHHHHHHH-CCCeEEEEe---
Confidence 457777777778766655443 33 4554444 32 01 222334444443 244444443
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-----CCcEEEcCCCCCHHHHHHHHHhcCC
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-----TIPVIANGNIQCLADVEACLAQTGV 356 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-----~iPVi~nGgI~s~~da~~~l~~~Ga 356 (487)
...+..+..+.+.+ ++|.+.+.+......+.......++.++++++.. ++|+++.|||+. +++.+++ +.|+
T Consensus 113 -~~~~~~~~~~~~~~-~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~-~~ga 188 (211)
T cd00429 113 -NPGTPVEVLEPYLD-EVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLA-EAGA 188 (211)
T ss_pred -cCCCCHHHHHHHHh-hCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHH-HcCC
Confidence 22223444444433 3898877443221111101111235566666665 489999999996 9999998 7999
Q ss_pred cEEEeccccccCccc
Q psy7343 357 AGVMTAEGNLYNPAL 371 (487)
Q Consensus 357 d~VmiGRa~l~~P~l 371 (487)
|++.+|++++..++.
T Consensus 189 d~iivgsai~~~~~~ 203 (211)
T cd00429 189 DVLVAGSALFGSDDY 203 (211)
T ss_pred CEEEECHHHhCCCCH
Confidence 999999999876653
No 201
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.76 E-value=0.00015 Score=70.55 Aligned_cols=106 Identities=18% Similarity=0.195 Sum_probs=71.8
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeec------cc---ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCC
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI------YQ---DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA 319 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~------~~---d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~ 319 (487)
|+... +++++.++.+... ++-+++-.|- +| ...+..++++.+++. +..+.+..-.+... ..|+.
T Consensus 102 Gtaa~-~~~~l~~~~~~~g---~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~-~~~ii~t~i~~dGt--~~G~d 174 (228)
T PRK04128 102 GTKAF-DLEFLEKVTSEFE---GITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKNY-VNRFIYTSIERDGT--LTGIE 174 (228)
T ss_pred Cchhc-CHHHHHHHHHHcC---CEEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHHH-hCEEEEEeccchhc--ccCHH
Confidence 34444 7998888777552 1222332221 12 223568899999888 99998855444332 44532
Q ss_pred CHHHHHHHHhh-CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 320 SWEHITAVRKA-LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 320 ~~~~i~~i~~~-~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
++.+. .++|||++|||.|.+|+.++. +.|+++|.+|++++..
T Consensus 175 ------~l~~~~~~~pviasGGv~~~~Dl~~l~-~~g~~gvivg~al~~g 217 (228)
T PRK04128 175 ------EIERFWGDEEFIYAGGVSSAEDVKKLA-EIGFSGVIIGKALYEG 217 (228)
T ss_pred ------HHHHhcCCCCEEEECCCCCHHHHHHHH-HCCCCEEEEEhhhhcC
Confidence 22233 589999999999999999998 5899999999998665
No 202
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=97.75 E-value=0.00079 Score=64.08 Aligned_cols=141 Identities=12% Similarity=0.164 Sum_probs=79.3
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
+.|+.+-+...+++++.+.+. +. .|+|-+ |+. ..+...+.++.+++. ++.+.+-+
T Consensus 56 ~~~v~v~lm~~~~~~~~~~~~---~~gadgv~v----------h~~-------~~~~~~~~~~~~~~~-g~~~~~~~--- 111 (210)
T TIGR01163 56 DLPIDVHLMVENPDRYIEDFA---EAGADIITV----------HPE-------ASEHIHRLLQLIKDL-GAKAGIVL--- 111 (210)
T ss_pred CCcEEEEeeeCCHHHHHHHHH---HcCCCEEEE----------ccC-------CchhHHHHHHHHHHc-CCcEEEEE---
Confidence 456666666667766644433 43 455444 332 112223444444432 44444333
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC-----CcEEEcCCCCCHHHHHHHHHhcCC
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT-----IPVIANGNIQCLADVEACLAQTGV 356 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~-----iPVi~nGgI~s~~da~~~l~~~Ga 356 (487)
+..+..+..+.+. .++|.|.+.+......+.......++.++++++.++ +|+.+.|||+ .+++.+++ ++|+
T Consensus 112 -~~~t~~e~~~~~~-~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~-~~ga 187 (210)
T TIGR01163 112 -NPATPLEFLEYVL-PDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELA-EAGA 187 (210)
T ss_pred -CCCCCHHHHHHHH-hhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHH-HcCC
Confidence 3334455555543 468998774432211110001112355555655443 7999999996 79999998 7999
Q ss_pred cEEEeccccccCccc
Q psy7343 357 AGVMTAEGNLYNPAL 371 (487)
Q Consensus 357 d~VmiGRa~l~~P~l 371 (487)
|++.+|++++..++.
T Consensus 188 d~iivgsai~~~~d~ 202 (210)
T TIGR01163 188 DILVAGSAIFGADDY 202 (210)
T ss_pred CEEEEChHHhCCCCH
Confidence 999999999876643
No 203
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=97.74 E-value=0.00034 Score=71.78 Aligned_cols=121 Identities=16% Similarity=0.166 Sum_probs=79.9
Q ss_pred chhhhcChhHHHHHHhc----C---CCCCCeeeeecc-CCHHHHHHHHHhhCCc-CcEEEeecCCCccee-----eccCc
Q psy7343 183 AHQFIADKKLRQEILMS----T---PEDRPLIIQFCG-NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVA-----KRGHY 248 (487)
Q Consensus 183 ~~~Ll~~~~~~~~~l~~----~---~~~~Pv~Vqi~g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~-----~~gr~ 248 (487)
+....++++...++++. . ..+.||+||+.. .+.+++.++++.++++ .|+|.++-.-+.... ....+
T Consensus 175 g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~ 254 (327)
T cd04738 175 GLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANET 254 (327)
T ss_pred ccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCC
Confidence 34446777777777652 1 124899999984 4456788888888776 899987644321110 01111
Q ss_pred cc-cccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 249 GA-YLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 249 G~-~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
|+ ..........+.+..+++.+ ++||++.+ ++.+..++.+.+. +|||.|+| ||..
T Consensus 255 gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~G----GI~t~~da~e~l~-aGAd~V~v-g~~~ 312 (327)
T cd04738 255 GGLSGAPLKERSTEVLRELYKLTGGKIPIIGVG----GISSGEDAYEKIR-AGASLVQL-YTGL 312 (327)
T ss_pred CccCChhhhHHHHHHHHHHHHHhCCCCcEEEEC----CCCCHHHHHHHHH-cCCCHHhc-cHHH
Confidence 11 11222334456677777777 79999997 8889999999997 99999999 7743
No 204
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.74 E-value=0.0001 Score=72.45 Aligned_cols=84 Identities=19% Similarity=0.127 Sum_probs=69.2
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
+..+.++.+++.|+..+.|--=... .....+.+.++++.+.+.+|+...|||+|.+|+++++ ..|||.|++|+.+
T Consensus 32 ~p~~~a~~~~~~g~~~lhivDLd~a----~g~~~n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l-~~Ga~~vvigT~a 106 (243)
T TIGR01919 32 SLESAAKWWEQGGAEWIHLVDLDAA----FGGGNNEMMLEEVVKLLVVVEELSGGRRDDSSLRAAL-TGGRARVNGGTAA 106 (243)
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCC----CCCcchHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHH-HcCCCEEEECchh
Confidence 5567788889999998888321111 1234578999999999999999999999999999999 6899999999999
Q ss_pred ccCcccccC
Q psy7343 366 LYNPALFTG 374 (487)
Q Consensus 366 l~~P~lf~~ 374 (487)
+.||+++.+
T Consensus 107 ~~~p~~~~~ 115 (243)
T TIGR01919 107 LENPWWAAA 115 (243)
T ss_pred hCCHHHHHH
Confidence 999988753
No 205
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=97.73 E-value=0.0013 Score=62.56 Aligned_cols=105 Identities=18% Similarity=0.270 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC-CcE
Q psy7343 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT-IPV 335 (487)
Q Consensus 257 ~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~-iPV 335 (487)
..+.++++.+++ .++++.+.+ .+..+..+.++.+.+.|+|.|.++.....+. .+...++.++++++.++ .++
T Consensus 89 ~~~~~~i~~~~~-~g~~~~~~~---~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~---~~~~~~~~i~~l~~~~~~~~i 161 (206)
T TIGR03128 89 ATIKGAVKAAKK-HGKEVQVDL---INVKDKVKRAKELKELGADYIGVHTGLDEQA---KGQNPFEDLQTILKLVKEARV 161 (206)
T ss_pred HHHHHHHHHHHH-cCCEEEEEe---cCCCChHHHHHHHHHcCCCEEEEcCCcCccc---CCCCCHHHHHHHHHhcCCCcE
Confidence 345666666665 488888763 1444566666777778999998853222222 22345677888887764 455
Q ss_pred EEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 336 IANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 336 i~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
...||| +.+.+.+++ +.|+|++.+||+++..+.
T Consensus 162 ~v~GGI-~~~n~~~~~-~~Ga~~v~vGsai~~~~d 194 (206)
T TIGR03128 162 AVAGGI-NLDTIPDVI-KLGPDIVIVGGAITKAAD 194 (206)
T ss_pred EEECCc-CHHHHHHHH-HcCCCEEEEeehhcCCCC
Confidence 558999 789999999 789999999999876543
No 206
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=97.72 E-value=0.00068 Score=65.05 Aligned_cols=130 Identities=19% Similarity=0.262 Sum_probs=86.5
Q ss_pred HHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecc-cccccHHHHHHHH
Q psy7343 217 NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIY-QDVNKTVEYARML 294 (487)
Q Consensus 217 ~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~-~d~~~~~e~a~~l 294 (487)
...++.+.++...|.||+-+-. |.....+++.+.+-++++++.+ ++|+.+-+-.+ -+.++....++..
T Consensus 72 K~~E~~~Av~~GAdEiDvv~n~----------g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia 141 (211)
T TIGR00126 72 KLYETKEAIKYGADEVDMVINI----------GALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEIC 141 (211)
T ss_pred HHHHHHHHHHcCCCEEEeecch----------HhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHH
Confidence 4455555666668888864332 2222247888888788888766 44444421111 1234567888889
Q ss_pred HHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 295 ERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 295 e~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
.++|+|.|-.+ - |+..+.+..+.++.+++.+ +++|-++|||+|.+++.+++ +.|++.+....
T Consensus 142 ~eaGADfvKTs-T-----Gf~~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i-~aGa~riGts~ 205 (211)
T TIGR00126 142 IDAGADFVKTS-T-----GFGAGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMI-EAGASRIGASA 205 (211)
T ss_pred HHhCCCEEEeC-C-----CCCCCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHH-HHhhHHhCcch
Confidence 99999999762 1 1123456677777666665 69999999999999999999 68888766544
No 207
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=97.70 E-value=0.00012 Score=70.52 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=67.6
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
+.+.....+.+.+..|...|-+-+. | ...+.+.++++++.+ ++|+++.|||+|.+++++++ +.|||+|.+
T Consensus 133 ~~e~~~ayA~aae~~g~~ivyLe~S-----G---~~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~-~aGAD~VVV 203 (219)
T cd02812 133 KPEDAAAYALAAEYLGMPIVYLEYS-----G---AYGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMA-EAGADTIVV 203 (219)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeCCC-----C---CcCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-HcCCCEEEE
Confidence 3446677788888899776666211 1 114688999999998 99999999999999999999 789999999
Q ss_pred ccccccCcccccC
Q psy7343 362 AEGNLYNPALFTG 374 (487)
Q Consensus 362 GRa~l~~P~lf~~ 374 (487)
|+++..||.++.+
T Consensus 204 Gsai~~~p~~~~~ 216 (219)
T cd02812 204 GNIVEEDPNAALE 216 (219)
T ss_pred CchhhCCHHHHHH
Confidence 9999999887653
No 208
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=97.69 E-value=0.00017 Score=70.45 Aligned_cols=83 Identities=17% Similarity=0.174 Sum_probs=71.0
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.++.++++.+++.|++.+.|---.+. .....+.+.++++.+.+.+|+...|||+|.+|+++++ ..||+.|.+|+.
T Consensus 35 ~dp~~~a~~~~~~g~~~l~i~DLd~~----~~~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l-~~Ga~~viigt~ 109 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIADLDAI----MGRGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWL-KRGASRVIVGTE 109 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCccc----cCCCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHH-HcCCCeEEEcce
Confidence 37899999999999999998443222 1234678999999999999999999999999999999 799999999999
Q ss_pred cccCccccc
Q psy7343 365 NLYNPALFT 373 (487)
Q Consensus 365 ~l~~P~lf~ 373 (487)
.+.| .++.
T Consensus 110 ~~~~-~~~~ 117 (233)
T cd04723 110 TLPS-DDDE 117 (233)
T ss_pred eccc-hHHH
Confidence 9999 7754
No 209
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=97.63 E-value=0.00051 Score=70.78 Aligned_cols=104 Identities=13% Similarity=0.092 Sum_probs=67.6
Q ss_pred hhcChhHHHHHHh----cCCCCCCeeeeecc----------CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccc
Q psy7343 186 FIADKKLRQEILM----STPEDRPLIIQFCG----------NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGA 250 (487)
Q Consensus 186 Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~g----------~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~ 250 (487)
+.+......++++ ....+ +|++++.. .+.+++.++++.+++. .|.|++..|...... .
T Consensus 198 lenR~rf~~eii~air~~vg~d-~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~-----~- 270 (338)
T cd02933 198 IENRARFLLEVVDAVAEAIGAD-RVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP-----E- 270 (338)
T ss_pred HHHhhhHHHHHHHHHHHHhCCC-ceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc-----c-
Confidence 3334444455553 23334 79999853 2567888999998876 899998666422111 1
Q ss_pred cccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 251 YLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 251 ~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
...++ ..+.+++.+++||++.+++ . ..++.+.+++.++|.|++ ||.
T Consensus 271 --~~~~~----~~~~ik~~~~ipvi~~G~i----~-~~~a~~~l~~g~~D~V~~-gR~ 316 (338)
T cd02933 271 --DQPPD----FLDFLRKAFKGPLIAAGGY----D-AESAEAALADGKADLVAF-GRP 316 (338)
T ss_pred --ccchH----HHHHHHHHcCCCEEEECCC----C-HHHHHHHHHcCCCCEEEe-CHh
Confidence 12333 4445677789999999844 3 666667777777999999 885
No 210
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=97.63 E-value=0.00018 Score=69.33 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=62.1
Q ss_pred HHHHHHHH-cCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 289 EYARMLER-AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 289 e~a~~le~-~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
..+...++ .|...|-+-.. +++..+.+.+.++++++.+ ++|++..|||+|.+++++++ +.|||+|.+|+.+.
T Consensus 139 a~~~lA~~~~g~~~vYlE~g-----s~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~-~aGAD~VVVGs~~~ 212 (223)
T TIGR01768 139 AYAAMAEEMLGMPIIYLEAG-----SGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMA-EAGADTIVTGNVIE 212 (223)
T ss_pred HHHHHHHHHcCCcEEEEEec-----CCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHH-HcCCCEEEECcHHh
Confidence 33334444 57776666211 2244556789999999998 99999999999999999999 67999999999999
Q ss_pred cCcccccC
Q psy7343 367 YNPALFTG 374 (487)
Q Consensus 367 ~~P~lf~~ 374 (487)
.||..+.+
T Consensus 213 ~dp~~~~~ 220 (223)
T TIGR01768 213 EDVDKALE 220 (223)
T ss_pred hCHHHHHH
Confidence 99877653
No 211
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.61 E-value=0.0019 Score=67.44 Aligned_cols=140 Identities=16% Similarity=0.251 Sum_probs=94.8
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEE-Eeec
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSC-KIRI 280 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~v-KiR~ 280 (487)
.+.++.+-+.-.|+.+++ ++.+.++ |+ ..++.|+.. ..+.+.+.++.+++. ++-+.+ -+
T Consensus 225 ~~~~I~~DLK~~Di~~~v--v~~~a~a--------GA-D~vTVH~ea------~~~ti~~ai~~akk~-GikvgVD~l-- 284 (391)
T PRK13307 225 PDAFIVADLKTLDTGNLE--ARMAADA--------TA-DAVVISGLA------PISTIEKAIHEAQKT-GIYSILDML-- 284 (391)
T ss_pred CCCeEEEEecccChhhHH--HHHHHhc--------CC-CEEEEeccC------CHHHHHHHHHHHHHc-CCEEEEEEc--
Confidence 356788888877877764 4444444 33 455666542 344566777777654 665555 33
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh-CCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA-LTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~-~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
+..+..+.++.+ ..++|.|.+|.....+ .....|+.++++++. .+++|...|||+ .+++.+++ +.|+|.+
T Consensus 285 --np~tp~e~i~~l-~~~vD~Vllht~vdp~----~~~~~~~kI~~ikk~~~~~~I~VdGGI~-~eti~~l~-~aGADiv 355 (391)
T PRK13307 285 --NVEDPVKLLESL-KVKPDVVELHRGIDEE----GTEHAWGNIKEIKKAGGKILVAVAGGVR-VENVEEAL-KAGADIL 355 (391)
T ss_pred --CCCCHHHHHHHh-hCCCCEEEEccccCCC----cccchHHHHHHHHHhCCCCcEEEECCcC-HHHHHHHH-HcCCCEE
Confidence 445666777766 6799999997322211 113457788888875 478999999998 88898888 7999999
Q ss_pred EeccccccCcc
Q psy7343 360 MTAEGNLYNPA 370 (487)
Q Consensus 360 miGRa~l~~P~ 370 (487)
.+||++...++
T Consensus 356 VVGsaIf~a~D 366 (391)
T PRK13307 356 VVGRAITKSKD 366 (391)
T ss_pred EEeHHHhCCCC
Confidence 99999765443
No 212
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=97.59 E-value=0.001 Score=68.14 Aligned_cols=190 Identities=16% Similarity=0.188 Sum_probs=97.4
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCC-CeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPM 156 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Ga-dl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApm 156 (487)
+.|++.|||.++|+..|...+.+.|. +++..+|.. +.+ ...+.... ++..+.+. . +..
T Consensus 34 ~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~~-~~~-------~~~i~~vk-~~l~v~~~--~---~~~------- 92 (325)
T cd00381 34 NIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMSI-EEQ-------AEEVRKVK-GRLLVGAA--V---GTR------- 92 (325)
T ss_pred CCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCCH-HHH-------HHHHHHhc-cCceEEEe--c---CCC-------
Confidence 45899999999999999998888886 877777632 222 11221111 22222221 1 100
Q ss_pred cCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHh---cCCCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEE
Q psy7343 157 VDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM---STPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGID 233 (487)
Q Consensus 157 a~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~---~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~Id 233 (487)
-.+...-....+.|++...-.+-.+ +++...+.++ ....+.||++ | +......+.+.++..+|+|.
T Consensus 93 --~~~~~~~~~l~eagv~~I~vd~~~G-----~~~~~~~~i~~ik~~~p~v~Vi~---G-~v~t~~~A~~l~~aGaD~I~ 161 (325)
T cd00381 93 --EDDKERAEALVEAGVDVIVIDSAHG-----HSVYVIEMIKFIKKKYPNVDVIA---G-NVVTAEAARDLIDAGADGVK 161 (325)
T ss_pred --hhHHHHHHHHHhcCCCEEEEECCCC-----CcHHHHHHHHHHHHHCCCceEEE---C-CCCCHHHHHHHHhcCCCEEE
Confidence 0111222333446765432111111 1111222222 1111345544 2 22222233333334489988
Q ss_pred eecCCCcceee-ccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 234 INIGCPQMVAK-RGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 234 iN~GcP~~i~~-~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
+.+|. -.... +...| ....++..+.++.+.+. ..++||++.+ .+.+..++++.+. .|+|+||+ |+.
T Consensus 162 vg~g~-G~~~~t~~~~g-~g~p~~~~i~~v~~~~~-~~~vpVIA~G----GI~~~~di~kAla-~GA~~Vmi-Gt~ 228 (325)
T cd00381 162 VGIGP-GSICTTRIVTG-VGVPQATAVADVAAAAR-DYGVPVIADG----GIRTSGDIVKALA-AGADAVML-GSL 228 (325)
T ss_pred ECCCC-CcCcccceeCC-CCCCHHHHHHHHHHHHh-hcCCcEEecC----CCCCHHHHHHHHH-cCCCEEEe-cch
Confidence 86442 11100 00001 11235666777666443 3479999987 7778899999886 99999999 653
No 213
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=97.59 E-value=0.0046 Score=60.78 Aligned_cols=151 Identities=22% Similarity=0.211 Sum_probs=100.2
Q ss_pred CCCCCeeeeec-c-CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccC--cEE
Q psy7343 201 PEDRPLIIQFC-G-NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV--PVS 275 (487)
Q Consensus 201 ~~~~Pv~Vqi~-g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~i--PV~ 275 (487)
....|+++-+- | .++++..+.++.+.+. +++|.|.=+... .+.|.+|+...-+.+...+.+++++++.+- ++.
T Consensus 67 ~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~--k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~ 144 (243)
T cd00377 67 AVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGP--KKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFV 144 (243)
T ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCC--ccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeE
Confidence 34679988865 2 3667777777766555 788888544321 123333444444677777777777776643 677
Q ss_pred EEee-----cc-cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCC-HHHHH
Q psy7343 276 CKIR-----IY-QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQC-LADVE 348 (487)
Q Consensus 276 vKiR-----~~-~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s-~~da~ 348 (487)
++.| .+ .+.++..+-++...++|+|.|.+++-. +.+.++++.+..+.|+.++-.=.. .-...
T Consensus 145 IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~-----------~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~ 213 (243)
T cd00377 145 IIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK-----------DPEEIRAFAEAPDVPLNVNMTPGGNLLTVA 213 (243)
T ss_pred EEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC-----------CHHHHHHHHhcCCCCEEEEecCCCCCCCHH
Confidence 7777 33 356678888899999999999996542 568899999999999987621110 02233
Q ss_pred HHHHhcCCcEEEecccc
Q psy7343 349 ACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 349 ~~l~~~Gad~VmiGRa~ 365 (487)
++- +.|++.|.+|-.+
T Consensus 214 ~l~-~lG~~~v~~~~~~ 229 (243)
T cd00377 214 ELA-ELGVRRVSYGLAL 229 (243)
T ss_pred HHH-HCCCeEEEEChHH
Confidence 343 6799999988643
No 214
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.55 E-value=0.00083 Score=69.08 Aligned_cols=106 Identities=24% Similarity=0.317 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC----CCHHHHHHHHhhC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL----ASWEHITAVRKAL 331 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~----~~~~~i~~i~~~~ 331 (487)
.+...+.++.+++..++||+++++.. +.++..++++.++++|+|+|.+|---........|. ..++.++.+++.+
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~-~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~ 164 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGS-SAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV 164 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccC-CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc
Confidence 45555566667667789999999543 456778999999999999999953210110011121 1357888999999
Q ss_pred CCcEEEc--CCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 332 TIPVIAN--GNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 332 ~iPVi~n--GgI~s~~da~~~l~~~Gad~VmiG 362 (487)
++||++. +++.+..++.+.+++.|+|+|.+.
T Consensus 165 ~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 165 SIPVAVKLSPYFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred CCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 9999965 566667788888878999999764
No 215
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.55 E-value=0.00045 Score=64.58 Aligned_cols=80 Identities=19% Similarity=0.160 Sum_probs=59.3
Q ss_pred HHHHHHHHcCCcEEEEEccccCCC-CCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQR-GMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~~-g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
+.+..+.+.|+|.|.+........ ..+..+..++.++++++..++||++.|||+ .+++.+++ ..|+|+|.+|++++.
T Consensus 106 ~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~-~~~i~~~~-~~Ga~~i~~g~~i~~ 183 (196)
T cd00564 106 EEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGIT-PENAAEVL-AAGADGVAVISAITG 183 (196)
T ss_pred HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHH-HcCCCEEEEehHhhc
Confidence 334556678999999843322111 112134568999999888899999999995 78999998 689999999999886
Q ss_pred Ccc
Q psy7343 368 NPA 370 (487)
Q Consensus 368 ~P~ 370 (487)
+++
T Consensus 184 ~~~ 186 (196)
T cd00564 184 ADD 186 (196)
T ss_pred CCC
Confidence 543
No 216
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=97.53 E-value=0.0011 Score=63.39 Aligned_cols=142 Identities=20% Similarity=0.227 Sum_probs=92.2
Q ss_pred Ceeeeecc-CCHHHHHHHHHhhCCc--CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 205 PLIIQFCG-NDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 205 Pv~Vqi~g-~d~~~~~~aa~~~~~~--~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
.+-.+..| .+.++.+..|+++.+. .+.|. +-+.+. --.|+.|+-...+-.+.+.+. ++-|.--
T Consensus 71 ~~LPNTaGc~taeEAv~tArlARE~~~t~wiK--------lEVi~d-~~tLlPD~~etl~Aae~Lv~e-GF~VlPY---- 136 (262)
T COG2022 71 TLLPNTAGCRTAEEAVRTARLAREALGTNWIK--------LEVIGD-EKTLLPDPIETLKAAEQLVKE-GFVVLPY---- 136 (262)
T ss_pred EeCCCccccCCHHHHHHHHHHHHHHccCCeEE--------EEEecC-CcccCCChHHHHHHHHHHHhC-CCEEeec----
Confidence 33344444 5778888888888776 23332 223222 123444554443333333222 3333322
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
..+-.-+++++++.||..||=-|- .. |.-.|..+...++-+.+..++|||..-||-++.|+...+ +.|||+|++
T Consensus 137 --~~dD~v~arrLee~GcaavMPl~a-PI--GSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aM-ElG~DaVL~ 210 (262)
T COG2022 137 --TTDDPVLARRLEEAGCAAVMPLGA-PI--GSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAM-ELGADAVLL 210 (262)
T ss_pred --cCCCHHHHHHHHhcCceEeccccc-cc--cCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHH-hcccceeeh
Confidence 223356789999999999996322 11 123466778889999999999999999999999999999 799999999
Q ss_pred ccccc
Q psy7343 362 AEGNL 366 (487)
Q Consensus 362 GRa~l 366 (487)
-++.-
T Consensus 211 NTAiA 215 (262)
T COG2022 211 NTAIA 215 (262)
T ss_pred hhHhh
Confidence 88754
No 217
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.50 E-value=0.0023 Score=60.44 Aligned_cols=87 Identities=15% Similarity=0.196 Sum_probs=62.2
Q ss_pred HHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcC
Q psy7343 261 NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANG 339 (487)
Q Consensus 261 eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nG 339 (487)
++++..+ ..+.++++- ..+..++ ....+.|+|.|.+... .....+.++.+++.. ++|+++.|
T Consensus 88 ~~~~~~~-~~~~~~i~g------v~t~~e~-~~A~~~Gad~i~~~p~---------~~~g~~~~~~l~~~~~~~p~~a~G 150 (190)
T cd00452 88 EVVKAAN-RAGIPLLPG------VATPTEI-MQALELGADIVKLFPA---------EAVGPAYIKALKGPFPQVRFMPTG 150 (190)
T ss_pred HHHHHHH-HcCCcEECC------cCCHHHH-HHHHHCCCCEEEEcCC---------cccCHHHHHHHHhhCCCCeEEEeC
Confidence 3444333 246666553 3355554 4456789999998321 112357788888777 69999999
Q ss_pred CCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 340 NIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 340 gI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
|| +.+++.+++ +.|+++|.++..+.
T Consensus 151 GI-~~~n~~~~~-~~G~~~v~v~s~i~ 175 (190)
T cd00452 151 GV-SLDNAAEWL-AAGVVAVGGGSLLP 175 (190)
T ss_pred CC-CHHHHHHHH-HCCCEEEEEchhcc
Confidence 99 899999999 78999999999887
No 218
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.49 E-value=0.0031 Score=63.77 Aligned_cols=141 Identities=18% Similarity=0.193 Sum_probs=88.4
Q ss_pred eeeecc-CCHHHHHHHHHhhCCc--CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccc
Q psy7343 207 IIQFCG-NDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD 283 (487)
Q Consensus 207 ~Vqi~g-~d~~~~~~aa~~~~~~--~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d 283 (487)
-.+..| .+.++....|+++.+. -+.| ++-+.+. .-.++.|.....+-.+.+.+. ++-+..-.
T Consensus 140 lpNTag~~ta~eAv~~a~lare~~~~~~i--------KlEvi~e-~~~llpd~~~~v~aa~~L~~~-Gf~v~~yc----- 204 (326)
T PRK11840 140 LPNTAGCYTAEEAVRTLRLAREAGGWDLV--------KLEVLGD-AKTLYPDMVETLKATEILVKE-GFQVMVYC----- 204 (326)
T ss_pred CccCCCCCCHHHHHHHHHHHHHhcCCCeE--------EEEEcCC-CCCcccCHHHHHHHHHHHHHC-CCEEEEEe-----
Confidence 334443 5677788888877765 1222 2333332 123344554443333332211 33331211
Q ss_pred cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 284 VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
.+....++.+++.|+..||--+- .- |.-.|..+.+.++.+.+..++||+..+||.+++|+.+.+ +.|||+|.+.+
T Consensus 205 -~~d~~~a~~l~~~g~~avmPl~~-pI--Gsg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~Am-elGadgVL~nS 279 (326)
T PRK11840 205 -SDDPIAAKRLEDAGAVAVMPLGA-PI--GSGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAM-ELGCDGVLMNT 279 (326)
T ss_pred -CCCHHHHHHHHhcCCEEEeeccc-cc--cCCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHH-HcCCCEEEEcc
Confidence 13466788899999977775111 11 112234478899999999999999999999999999999 79999999999
Q ss_pred cccc
Q psy7343 364 GNLY 367 (487)
Q Consensus 364 a~l~ 367 (487)
|...
T Consensus 280 aIa~ 283 (326)
T PRK11840 280 AIAE 283 (326)
T ss_pred eecc
Confidence 9863
No 219
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.47 E-value=0.0028 Score=67.53 Aligned_cols=102 Identities=20% Similarity=0.282 Sum_probs=72.6
Q ss_pred HHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEc
Q psy7343 259 LTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN 338 (487)
Q Consensus 259 i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~n 338 (487)
+.++++.+++ .++++.+.. .+..+..+.++.+.+.|+|.|.++.-...+. .+...++.++++++.+++||++.
T Consensus 96 ~~~~i~~a~~-~G~~~~~g~---~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~---~~~~~~~~l~~l~~~~~iPI~a~ 168 (430)
T PRK07028 96 IEDAVRAARK-YGVRLMADL---INVPDPVKRAVELEELGVDYINVHVGIDQQM---LGKDPLELLKEVSEEVSIPIAVA 168 (430)
T ss_pred HHHHHHHHHH-cCCEEEEEe---cCCCCHHHHHHHHHhcCCCEEEEEeccchhh---cCCChHHHHHHHHhhCCCcEEEE
Confidence 4556666665 477766531 1333445666777889999998853211111 12334688999998889999999
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEeccccccCc
Q psy7343 339 GNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 339 GgI~s~~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
||| +.+.+.+++ ..|+|++.+|++++..+
T Consensus 169 GGI-~~~n~~~~l-~aGAdgv~vGsaI~~~~ 197 (430)
T PRK07028 169 GGL-DAETAAKAV-AAGADIVIVGGNIIKSA 197 (430)
T ss_pred CCC-CHHHHHHHH-HcCCCEEEEChHHcCCC
Confidence 999 688899998 78999999999988754
No 220
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=97.46 E-value=0.00095 Score=65.97 Aligned_cols=91 Identities=20% Similarity=0.288 Sum_probs=70.0
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~ 328 (487)
|-...++++.+.+ |++.+++||++++|.+. ..-++.+.++|+|.|.-+.| .+ +..+.+..+|
T Consensus 47 ~v~R~~~~~~I~~----Ik~~V~iPVIGi~K~~~-----~~Ea~~L~eaGvDiIDaT~r---~r------P~~~~~~~iK 108 (283)
T cd04727 47 GVARMADPKMIKE----IMDAVSIPVMAKVRIGH-----FVEAQILEALGVDMIDESEV---LT------PADEEHHIDK 108 (283)
T ss_pred CeeecCCHHHHHH----HHHhCCCCeEEeeehhH-----HHHHHHHHHcCCCEEeccCC---CC------cHHHHHHHHH
Confidence 4455677777666 56678999999987653 67788999999999954333 11 1357888888
Q ss_pred hhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 329 KALTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 329 ~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
...+.|+++ |+.|.+++.+.. +.|+|.|.
T Consensus 109 ~~~~~l~MA--D~stleEal~a~-~~Gad~I~ 137 (283)
T cd04727 109 HKFKVPFVC--GARNLGEALRRI-SEGAAMIR 137 (283)
T ss_pred HHcCCcEEc--cCCCHHHHHHHH-HCCCCEEE
Confidence 888888887 999999999999 78999764
No 221
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.43 E-value=0.0025 Score=60.88 Aligned_cols=124 Identities=22% Similarity=0.337 Sum_probs=79.4
Q ss_pred HHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecc-cccccHHHHHHHHHHc
Q psy7343 220 EAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIY-QDVNKTVEYARMLERA 297 (487)
Q Consensus 220 ~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~-~d~~~~~e~a~~le~~ 297 (487)
++.+.++..+|+||+.+-. |.....+++.+.+-+.++++.. ++|+.+-+-.+ .+.+.....++...+.
T Consensus 74 eve~A~~~GAdevdvv~~~----------g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~ 143 (203)
T cd00959 74 EAREAIADGADEIDMVINI----------GALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEA 143 (203)
T ss_pred HHHHHHHcCCCEEEEeecH----------HHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 3444445558888865332 2222246776666677777765 35544321111 1234567778889999
Q ss_pred CCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 298 GCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 298 G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
|+|.|-.. | |+..+.+..+.++.+++.+ ++||.++|||+|.+++.+++ ..||+.+.
T Consensus 144 GaD~IKTs--T----G~~~~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~-~~g~~riG 201 (203)
T cd00959 144 GADFIKTS--T----GFGPGGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMI-EAGATRIG 201 (203)
T ss_pred CCCEEEcC--C----CCCCCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHH-HhChhhcc
Confidence 99999872 1 1122446666666665554 69999999999999999999 67888654
No 222
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.40 E-value=0.0056 Score=58.74 Aligned_cols=138 Identities=13% Similarity=0.196 Sum_probs=76.9
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccc
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQD 283 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d 283 (487)
.++.+-+..++++.+.+.+. +..+|+|-+|.+- + +...+.++.+++ .++.+.+-+ +
T Consensus 62 ~~~~v~l~v~d~~~~i~~~~--~~g~d~v~vh~~~----------------~-~~~~~~~~~~~~-~~~~~g~~~----~ 117 (220)
T PRK05581 62 LPLDVHLMVENPDRYVPDFA--KAGADIITFHVEA----------------S-EHIHRLLQLIKS-AGIKAGLVL----N 117 (220)
T ss_pred CcEEEEeeeCCHHHHHHHHH--HcCCCEEEEeecc----------------c-hhHHHHHHHHHH-cCCEEEEEE----C
Confidence 46667778888877765553 2224554444321 1 222334444443 245444433 2
Q ss_pred cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCH---HHHHHHHhhCC-----CcEEEcCCCCCHHHHHHHHHhcC
Q psy7343 284 VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW---EHITAVRKALT-----IPVIANGNIQCLADVEACLAQTG 355 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~---~~i~~i~~~~~-----iPVi~nGgI~s~~da~~~l~~~G 355 (487)
..+..+..+.+. .++|+|.+-+......+ ...++ +.++++++..+ .+|...|||+. +++.+++ +.|
T Consensus 118 ~~t~~e~~~~~~-~~~d~i~~~~~~~g~tg---~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~-~~G 191 (220)
T PRK05581 118 PATPLEPLEDVL-DLLDLVLLMSVNPGFGG---QKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECA-EAG 191 (220)
T ss_pred CCCCHHHHHHHH-hhCCEEEEEEECCCCCc---ccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHH-HcC
Confidence 223344444442 34788776332111111 11223 44555554432 33557799988 8999988 689
Q ss_pred CcEEEeccccccCccc
Q psy7343 356 VAGVMTAEGNLYNPAL 371 (487)
Q Consensus 356 ad~VmiGRa~l~~P~l 371 (487)
+|+|.+|++++.+++.
T Consensus 192 aD~vvvgSai~~~~d~ 207 (220)
T PRK05581 192 ADVFVAGSAVFGAPDY 207 (220)
T ss_pred CCEEEEChhhhCCCCH
Confidence 9999999999977654
No 223
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=97.38 E-value=0.00034 Score=68.00 Aligned_cols=68 Identities=22% Similarity=0.293 Sum_probs=55.6
Q ss_pred cCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCC-cEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 297 AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTI-PVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 297 ~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~i-PVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
.|...+-+-.. +....+.+.+.++++++.+++ |+++.|||++.+++++++ ..|||+|.+|+++..||.
T Consensus 153 ~g~~~vYle~g-----s~~g~~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l-~~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 153 LGMPIVYLEYG-----GGAGDPVPPEMVKAVKKALDITPLIYGGGIRSPEQARELM-AAGADTIVVGNIIEEDPK 221 (232)
T ss_pred cCCCeEEEECC-----CCCCCCCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHH-HhCCCEEEEChHHhhCHH
Confidence 46665555221 113445678999999999998 999999999999999988 689999999999999987
No 224
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.37 E-value=0.00076 Score=69.99 Aligned_cols=112 Identities=16% Similarity=0.201 Sum_probs=70.0
Q ss_pred hhhcChhHHHHHHh----cCCCCCCeeeeecc-----------CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCc
Q psy7343 185 QFIADKKLRQEILM----STPEDRPLIIQFCG-----------NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHY 248 (487)
Q Consensus 185 ~Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~g-----------~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~ 248 (487)
.|.+......++++ ....+.||+++|.+ .++++..++++.+++. .|.|++..|- .. ...+
T Consensus 189 slenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~-~~---~~~~ 264 (361)
T cd04747 189 SLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRR-FW---EPEF 264 (361)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCC-cc---CCCc
Confidence 33333444445553 34456799999863 3456777788888776 7888886651 00 0001
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecc--------------cccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY--------------QDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~--------------~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
.+ .+++ +.+.+++.+++||++.+++. .+..+..+..+.+++.++|.|++ ||.
T Consensus 265 ~~---~~~~----~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~-gR~ 330 (361)
T cd04747 265 EG---SELN----LAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAV-GRA 330 (361)
T ss_pred Cc---cchh----HHHHHHHHcCCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehh-hHH
Confidence 00 1233 33456777899999998762 12346677777787788999999 885
No 225
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.36 E-value=0.0013 Score=67.88 Aligned_cols=121 Identities=16% Similarity=0.187 Sum_probs=78.7
Q ss_pred chhhhcChhHHHHHHhc--CC-C----CCCeeeeecc-CCHHHHHHHHHhhCCc-CcEEEeecCCCcce-ee----ccCc
Q psy7343 183 AHQFIADKKLRQEILMS--TP-E----DRPLIIQFCG-NDSKNLTEAAKLAEPH-CDGIDINIGCPQMV-AK----RGHY 248 (487)
Q Consensus 183 ~~~Ll~~~~~~~~~l~~--~~-~----~~Pv~Vqi~g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i-~~----~gr~ 248 (487)
+....++++...++++. .. . +.||+|||.. .+.+++.++++.++++ .|+|.++-+-+... .. ....
T Consensus 184 g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~ 263 (344)
T PRK05286 184 GLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEA 263 (344)
T ss_pred CcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCC
Confidence 33446677777777642 11 1 3899999994 4456788899988876 89998876542210 00 0011
Q ss_pred cc-cccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 249 GA-YLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 249 G~-~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
|+ ..........+.++.+++.+ ++||++.+ ++.+.+++.+.+. +|||.|+| +|..
T Consensus 264 gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~G----GI~s~eda~e~l~-aGAd~V~v-~~~~ 321 (344)
T PRK05286 264 GGLSGRPLFERSTEVIRRLYKELGGRLPIIGVG----GIDSAEDAYEKIR-AGASLVQI-YSGL 321 (344)
T ss_pred CCcccHHHHHHHHHHHHHHHHHhCCCCCEEEEC----CCCCHHHHHHHHH-cCCCHHHH-HHHH
Confidence 11 11111223445666677777 79999997 8889999999997 99999999 7753
No 226
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=97.34 E-value=0.0017 Score=63.86 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=80.4
Q ss_pred HHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc---ccc-cHHHHHH
Q psy7343 217 NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ---DVN-KTVEYAR 292 (487)
Q Consensus 217 ~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~---d~~-~~~e~a~ 292 (487)
...++...++..+|.||+=+.. |..+..+++.+.+-++++++.++-++.+|+-+.. +.+ ....+++
T Consensus 85 K~~Ea~~Ai~~GAdEiD~Vini----------g~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~ 154 (257)
T PRK05283 85 ALAETRAAIAYGADEVDVVFPY----------RALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASE 154 (257)
T ss_pred HHHHHHHHHHcCCCEEeeeccH----------HHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHH
Confidence 4456666777778888853221 2222347898888888888765423455544421 223 3667888
Q ss_pred HHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-------CCcEEEcCCCCCHHHHHHHHH
Q psy7343 293 MLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-------TIPVIANGNIQCLADVEACLA 352 (487)
Q Consensus 293 ~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-------~iPVi~nGgI~s~~da~~~l~ 352 (487)
.+.++|+|+|--+ .|+..+.+..+.++.+++.+ ++-|-++|||+|.+++.++++
T Consensus 155 ~a~~aGADFVKTS------TGf~~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ 215 (257)
T PRK05283 155 IAIKAGADFIKTS------TGKVPVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLA 215 (257)
T ss_pred HHHHhCCCEEEcC------CCCCCCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHH
Confidence 9999999999541 12233457777777776664 477899999999999999994
No 227
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.34 E-value=0.0012 Score=63.03 Aligned_cols=82 Identities=21% Similarity=0.229 Sum_probs=58.7
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCC-CCCCCCCCCHHHHHHHHhhCC-CcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQ-RGMNTGLASWEHITAVRKALT-IPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~-~g~~~g~~~~~~i~~i~~~~~-iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
+..+ +....+.|+|.|.++.-.... .+.+.....++.++++++..+ +||++.||| +.+++.+++ ..|+|+|.+|+
T Consensus 113 t~~e-~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~-~~Ga~gv~~gs 189 (212)
T PRK00043 113 TLEE-AAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVL-EAGADGVAVVS 189 (212)
T ss_pred CHHH-HHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHH-HcCCCEEEEeH
Confidence 4344 445557899999984321111 111222224889999998887 999999999 689999999 79999999999
Q ss_pred ccccCcc
Q psy7343 364 GNLYNPA 370 (487)
Q Consensus 364 a~l~~P~ 370 (487)
+++.+++
T Consensus 190 ~i~~~~d 196 (212)
T PRK00043 190 AITGAED 196 (212)
T ss_pred HhhcCCC
Confidence 9876543
No 228
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=97.34 E-value=0.0058 Score=59.12 Aligned_cols=136 Identities=10% Similarity=0.167 Sum_probs=86.3
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~ 282 (487)
+.|+-|-+.-.+|+.+.+.... + |+ ..++.|-.. .+.+.++++.+|+. ++...+-+
T Consensus 58 ~~~~dvHLMv~~p~~~i~~~~~---~--------ga-d~i~~H~Ea-------~~~~~~~l~~ik~~-g~k~Glal---- 113 (220)
T PRK08883 58 TAPIDVHLMVKPVDRIIPDFAK---A--------GA-SMITFHVEA-------SEHVDRTLQLIKEH-GCQAGVVL---- 113 (220)
T ss_pred CCCEEEEeccCCHHHHHHHHHH---h--------CC-CEEEEcccC-------cccHHHHHHHHHHc-CCcEEEEe----
Confidence 5788899988899887754332 2 32 345555431 12345566667654 66555555
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC----CCHHHHHHHHhhC-----CCcEEEcCCCCCHHHHHHHHHh
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL----ASWEHITAVRKAL-----TIPVIANGNIQCLADVEACLAQ 353 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~----~~~~~i~~i~~~~-----~iPVi~nGgI~s~~da~~~l~~ 353 (487)
+..+..+..+.+.+ -+|.|++-+-.. ++.|. ...+.++++++.. ++||.+-|||+ .+.+.++. +
T Consensus 114 nP~Tp~~~i~~~l~-~~D~vlvMtV~P----GfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~-~ 186 (220)
T PRK08883 114 NPATPLHHLEYIMD-KVDLILLMSVNP----GFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIA-E 186 (220)
T ss_pred CCCCCHHHHHHHHH-hCCeEEEEEecC----CCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHH-H
Confidence 33344444443332 278888743321 13332 2346777777665 48999999998 88999988 7
Q ss_pred cCCcEEEeccccccCc
Q psy7343 354 TGVAGVMTAEGNLYNP 369 (487)
Q Consensus 354 ~Gad~VmiGRa~l~~P 369 (487)
.|||++.+|++++..+
T Consensus 187 aGAd~vVvGSaIf~~~ 202 (220)
T PRK08883 187 AGADMFVAGSAIFGQP 202 (220)
T ss_pred cCCCEEEEeHHHhCCC
Confidence 9999999999976543
No 229
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.28 E-value=0.00082 Score=65.08 Aligned_cols=85 Identities=14% Similarity=0.142 Sum_probs=68.3
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHh-cCCcEEEecc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQ-TGVAGVMTAE 363 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~-~Gad~VmiGR 363 (487)
.++.+.++.+.+.|+|.+.|--=... .....+.+.++++.+.+ |+...|||+|.+|+++++.. .+|+.|.+|+
T Consensus 36 ~dP~~~a~~~~~~g~~~l~ivDLd~~----~~~~~n~~~i~~i~~~~--~v~vgGGirs~e~~~~~~~~l~~a~rvvigT 109 (221)
T TIGR00734 36 SSPDDAAKVIEEIGARFIYIADLDRI----VGLGDNFSLLSKLSKRV--ELIADCGVRSPEDLETLPFTLEFASRVVVAT 109 (221)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEcccc----cCCcchHHHHHHHHhhC--cEEEcCccCCHHHHHHHHhhhccceEEeecC
Confidence 47899999999999999988322111 12345789999998874 99999999999999999642 3699999999
Q ss_pred ccccCcccccCC
Q psy7343 364 GNLYNPALFTGQ 375 (487)
Q Consensus 364 a~l~~P~lf~~~ 375 (487)
..+.||.++.+.
T Consensus 110 ~a~~~p~~l~~~ 121 (221)
T TIGR00734 110 ETLDITELLREC 121 (221)
T ss_pred hhhCCHHHHHHh
Confidence 999999987654
No 230
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.27 E-value=0.0058 Score=61.32 Aligned_cols=82 Identities=20% Similarity=0.327 Sum_probs=61.1
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcC--CCCCHHHHHHHHHhcCCcEEEec
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANG--NIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nG--gI~s~~da~~~l~~~Gad~VmiG 362 (487)
.+..++.+..+++|+|++.+.-.+.-.........+++.++++++.+++|+++-| ||. .+++.+++ +.|+++|-+.
T Consensus 153 t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~-~e~~~~~i-~~G~~kinv~ 230 (281)
T PRK06806 153 TSTTEAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGIS-PEDFKKCI-QHGIRKINVA 230 (281)
T ss_pred CCHHHHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCC-HHHHHHHH-HcCCcEEEEh
Confidence 3566766667789999998821211111011223578999999999999999999 885 67788888 7999999999
Q ss_pred cccccC
Q psy7343 363 EGNLYN 368 (487)
Q Consensus 363 Ra~l~~ 368 (487)
+++..+
T Consensus 231 T~i~~a 236 (281)
T PRK06806 231 TATFNS 236 (281)
T ss_pred HHHHHH
Confidence 988774
No 231
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.26 E-value=0.0036 Score=59.06 Aligned_cols=83 Identities=20% Similarity=0.308 Sum_probs=59.8
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccC--CCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVD--QRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~--~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
+..+..+..+ +.+.|+|.|.+ |.... .++.......++.++++++.. ++||++.||| +.+++.+++ .+|+++|
T Consensus 102 s~h~~~e~~~-a~~~g~dyi~~-~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~-~~G~~gv 177 (196)
T TIGR00693 102 STHNLEELAE-AEAEGADYIGF-GPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVL-AAGADGV 177 (196)
T ss_pred eCCCHHHHHH-HhHcCCCEEEE-CCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHH-HcCCCEE
Confidence 4445666554 66789999998 43211 111122234688899888765 5999999999 589999998 7899999
Q ss_pred EeccccccCc
Q psy7343 360 MTAEGNLYNP 369 (487)
Q Consensus 360 miGRa~l~~P 369 (487)
.+|++++...
T Consensus 178 a~~~~i~~~~ 187 (196)
T TIGR00693 178 AVVSAIMQAA 187 (196)
T ss_pred EEhHHhhCCC
Confidence 9999988543
No 232
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.25 E-value=0.0029 Score=61.23 Aligned_cols=77 Identities=14% Similarity=0.051 Sum_probs=57.6
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
+...++.|+|+|.+ |-..........+...+.++++++.+++||++-||| +.+++.+++ ++|+++|.+-++++..++
T Consensus 124 a~~A~~~gaDYv~~-Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~-~~GA~giAvisai~~~~d 200 (221)
T PRK06512 124 AMEIGELRPDYLFF-GKLGADNKPEAHPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVA-ETGAEFVALERAVFDAHD 200 (221)
T ss_pred HHHhhhcCCCEEEE-CCCCCCCCCCCCCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHH-HhCCCEEEEhHHhhCCCC
Confidence 34456789999999 532211101122334678888888899999999999 789999999 799999999999986543
No 233
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=97.25 E-value=0.0056 Score=58.63 Aligned_cols=72 Identities=26% Similarity=0.296 Sum_probs=56.4
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
.+..| +....+.|+|.|.+.. .....++.++.+++.+ ++|+++.||| +.+++.+++ +.|+++|.++
T Consensus 112 ~t~~E-~~~A~~~Gad~vk~Fp---------a~~~G~~~l~~l~~~~~~~ipvvaiGGI-~~~n~~~~~-~aGa~~vav~ 179 (206)
T PRK09140 112 ATPTE-AFAALRAGAQALKLFP---------ASQLGPAGIKALRAVLPPDVPVFAVGGV-TPENLAPYL-AAGAAGFGLG 179 (206)
T ss_pred CCHHH-HHHHHHcCCCEEEECC---------CCCCCHHHHHHHHhhcCCCCeEEEECCC-CHHHHHHHH-HCCCeEEEEe
Confidence 34545 4555678999998722 1223478899999887 4999999999 789999999 7899999999
Q ss_pred cccccC
Q psy7343 363 EGNLYN 368 (487)
Q Consensus 363 Ra~l~~ 368 (487)
++++..
T Consensus 180 s~l~~~ 185 (206)
T PRK09140 180 SALYRP 185 (206)
T ss_pred hHhccc
Confidence 998764
No 234
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=97.24 E-value=0.0075 Score=62.49 Aligned_cols=108 Identities=19% Similarity=0.180 Sum_probs=76.2
Q ss_pred cCChHHHHHHHHHHhhhc-cCcEEEEeecccc-cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCH----HHHHH
Q psy7343 253 QDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQD-VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW----EHITA 326 (487)
Q Consensus 253 ~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d-~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~----~~i~~ 326 (487)
..+++ +.+-++.+++.. +.||++|+-.... ..+..++.+.++..++|++.+|--.........+..++ +.+++
T Consensus 102 ~~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~ 180 (352)
T PRK05437 102 LKDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAE 180 (352)
T ss_pred ccChh-hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHH
Confidence 45677 666667777766 8999999855322 22457778888888999999975321111112333345 67888
Q ss_pred HHhhCCCcEEE--cCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 327 VRKALTIPVIA--NGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 327 i~~~~~iPVi~--nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+++.+++||+. +|.-.+.++++.+. +.|+|+|.++
T Consensus 181 i~~~~~vPVivK~~g~g~s~~~a~~l~-~~Gvd~I~Vs 217 (352)
T PRK05437 181 IVSALPVPVIVKEVGFGISKETAKRLA-DAGVKAIDVA 217 (352)
T ss_pred HHHhhCCCEEEEeCCCCCcHHHHHHHH-HcCCCEEEEC
Confidence 89989999996 66667888887777 7899999984
No 235
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=97.21 E-value=0.004 Score=59.68 Aligned_cols=82 Identities=23% Similarity=0.328 Sum_probs=62.7
Q ss_pred HHHHHHHHHHcCCcEEEEEccccCC-CCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 287 TVEYARMLERAGCQLLAVHGRTVDQ-RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 287 ~~e~a~~le~~G~d~I~VhgRt~~~-~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
..+.+...++.|+|+|.+ |..... ......+.-++.++.+++...+|+++-|||+ .+.+.+++ ++|+++|.+-|++
T Consensus 113 ~~eea~~A~~~g~DYv~~-GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi~-~~nv~~v~-~~Ga~gVAvvsai 189 (211)
T COG0352 113 DLEEALEAEELGADYVGL-GPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGIN-LENVPEVL-EAGADGVAVVSAI 189 (211)
T ss_pred CHHHHHHHHhcCCCEEEE-CCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCCC-HHHHHHHH-HhCCCeEEehhHh
Confidence 345556677788999999 753221 1001134568999999999999999999995 78899999 7999999999999
Q ss_pred ccCccc
Q psy7343 366 LYNPAL 371 (487)
Q Consensus 366 l~~P~l 371 (487)
+..++.
T Consensus 190 ~~a~d~ 195 (211)
T COG0352 190 TSAADP 195 (211)
T ss_pred hcCCCH
Confidence 887655
No 236
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=97.18 E-value=0.029 Score=54.05 Aligned_cols=154 Identities=16% Similarity=0.192 Sum_probs=96.3
Q ss_pred CCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec
Q psy7343 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI 280 (487)
Q Consensus 201 ~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~ 280 (487)
....||.+++.-||+.....+|.... .+.|-+|.=+=...+-.| .+.-+-..+.+....+. .++.+.+.+..
T Consensus 83 ~v~iPvGvNVLrNd~vaA~~IA~a~g--A~FIRVN~~tg~~~tdqG----iieg~A~e~~r~r~~L~--~~v~vlADv~V 154 (263)
T COG0434 83 EVSIPVGVNVLRNDAVAALAIAYAVG--ADFIRVNVLTGAYATDQG----IIEGNAAELARYRARLG--SRVKVLADVHV 154 (263)
T ss_pred hccccceeeeeccccHHHHHHHHhcC--CCEEEEEeeeceEecccc----eecchHHHHHHHHHhcc--CCcEEEeecch
Confidence 34689999988777665555554332 455555532211222211 12222333334333333 24556655433
Q ss_pred ----ccccccHHHHHHH-HHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcC
Q psy7343 281 ----YQDVNKTVEYARM-LERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTG 355 (487)
Q Consensus 281 ----~~d~~~~~e~a~~-le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~G 355 (487)
.-...+..+.++- ++..++|+|+++|.+. ..+++.+.++.+++..+.||+++.|+ +++.+.++++ .
T Consensus 155 KHa~~l~~~~~~~~v~dtver~~aDaVI~tG~~T------G~~~d~~el~~a~~~~~~pvlvGSGv-~~eN~~~~l~-~- 225 (263)
T COG0434 155 KHAVHLGNRSLEEAVKDTVERGLADAVIVTGSRT------GSPPDLEELKLAKEAVDTPVLVGSGV-NPENIEELLK-I- 225 (263)
T ss_pred hcccccCCcCHHHHHHHHHHccCCCEEEEecccC------CCCCCHHHHHHHHhccCCCEEEecCC-CHHHHHHHHH-H-
Confidence 1122355666655 7778899999988642 24578999999999999999998777 5888999984 3
Q ss_pred CcEEEeccccccCccc
Q psy7343 356 VAGVMTAEGNLYNPAL 371 (487)
Q Consensus 356 ad~VmiGRa~l~~P~l 371 (487)
|||+++|+.+=.+--+
T Consensus 226 adG~IvgT~lK~~G~~ 241 (263)
T COG0434 226 ADGVIVGTSLKKGGVT 241 (263)
T ss_pred cCceEEEEEEccCCEe
Confidence 9999999976666433
No 237
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=97.17 E-value=0.001 Score=64.99 Aligned_cols=150 Identities=17% Similarity=0.215 Sum_probs=89.7
Q ss_pred CCCeeeeec-cC-C-HHH-----HHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhh---cc
Q psy7343 203 DRPLIIQFC-GN-D-SKN-----LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA---VQ 271 (487)
Q Consensus 203 ~~Pv~Vqi~-g~-d-~~~-----~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~---~~ 271 (487)
..++++.+- |. . ... ..++.+.++...|+|++-+-. +.....+++...+.+..+++. .+
T Consensus 56 ~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~----------~~~~~~~~~~~~~~i~~v~~~~~~~g 125 (236)
T PF01791_consen 56 KVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINY----------GALGSGNEDEVIEEIAAVVEECHKYG 125 (236)
T ss_dssp EEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEH----------HHHHTTHHHHHHHHHHHHHHHHHTSE
T ss_pred ccceEEEeCCCCCccccccccchHHHHHHHHHcCCceeeeeccc----------cccccccHHHHHHHHHHHHHHHhcCC
Confidence 455666654 32 2 233 445555566667888753211 111112355555555555444 37
Q ss_pred CcEEEEeeccccc-------ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCc----EEEcCC
Q psy7343 272 VPVSCKIRIYQDV-------NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIP----VIANGN 340 (487)
Q Consensus 272 iPV~vKiR~~~d~-------~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iP----Vi~nGg 340 (487)
+||++-.-+.... +.....++.+.+.|+|.|-..-. .. . .....+.+.++++.+...+| |.++||
T Consensus 126 l~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg-~~-~--~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGG 201 (236)
T PF01791_consen 126 LKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTG-KP-V--GATPEDVELMRKAVEAAPVPGKVGVKASGG 201 (236)
T ss_dssp EEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-S-SS-S--CSHHHHHHHHHHHHHTHSSTTTSEEEEESS
T ss_pred cEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCC-cc-c--cccHHHHHHHHHHHHhcCCCcceEEEEeCC
Confidence 8998873222111 13577888889999999987321 11 1 11112345566666666889 999999
Q ss_pred C------CCHHHHHHHHHhcCC--cEEEecccccc
Q psy7343 341 I------QCLADVEACLAQTGV--AGVMTAEGNLY 367 (487)
Q Consensus 341 I------~s~~da~~~l~~~Ga--d~VmiGRa~l~ 367 (487)
| ++.+++.+++ +.|| -|+..||.++.
T Consensus 202 i~~~~~~~~l~~a~~~i-~aGa~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 202 IDAEDFLRTLEDALEFI-EAGADRIGTSSGRNIWQ 235 (236)
T ss_dssp SSHHHHHHSHHHHHHHH-HTTHSEEEEEEHHHHHT
T ss_pred CChHHHHHHHHHHHHHH-HcCChhHHHHHHHHHHc
Confidence 9 9999999999 7899 99999997653
No 238
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=97.17 E-value=0.0049 Score=63.21 Aligned_cols=106 Identities=25% Similarity=0.331 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCC----CHHHHHHHHhhCC
Q psy7343 257 PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA----SWEHITAVRKALT 332 (487)
Q Consensus 257 ~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~----~~~~i~~i~~~~~ 332 (487)
+...+.+...++..+.||++++ .+.+.+++.++++.++++|+|+|.++--.....+...|.. ..+.++.+++.++
T Consensus 85 ~~~~~~i~~~~~~~~~pvi~si-~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~ 163 (325)
T cd04739 85 EEYLELIRRAKRAVSIPVIASL-NGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVT 163 (325)
T ss_pred HHHHHHHHHHHhccCCeEEEEe-CCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccC
Confidence 3333334344445578999987 2335567889999999999999999653211111122211 2477888888889
Q ss_pred CcEEE--cCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 333 IPVIA--NGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 333 iPVi~--nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
+||++ ++++.+..++.+.+++.|+|++.+.-
T Consensus 164 iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~n 196 (325)
T cd04739 164 IPVAVKLSPFFSALAHMAKQLDAAGADGLVLFN 196 (325)
T ss_pred CCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEc
Confidence 99985 56667777888878789999998743
No 239
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.11 E-value=0.012 Score=57.25 Aligned_cols=148 Identities=16% Similarity=0.261 Sum_probs=92.8
Q ss_pred eeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccc
Q psy7343 206 LIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQD 283 (487)
Q Consensus 206 v~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d 283 (487)
+++.|...|+..+.+-.+.+++. .|.+.+..- .|.+--.+.-.+ ++++++++.. ++|+.+++ -
T Consensus 9 i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~Dim-------Dg~fvpn~~~G~----~~v~~lr~~~~~~~lDvHL----m 73 (228)
T PTZ00170 9 IAPSILAADFSKLADEAQDVLSGGADWLHVDVM-------DGHFVPNLSFGP----PVVKSLRKHLPNTFLDCHL----M 73 (228)
T ss_pred EehhHhhcCHHHHHHHHHHHHHcCCCEEEEecc-------cCccCCCcCcCH----HHHHHHHhcCCCCCEEEEE----C
Confidence 34445566888888888877775 555444321 111111111123 3455577666 78898887 4
Q ss_pred cccHHHHHHHHHHcCCcEEEEEccccCC-----------C-----------------------------------CCCCC
Q psy7343 284 VNKTVEYARMLERAGCQLLAVHGRTVDQ-----------R-----------------------------------GMNTG 317 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~VhgRt~~~-----------~-----------------------------------g~~~g 317 (487)
..+...+++.+.++|+|.|+||+.+... . +++.|
T Consensus 74 ~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~~g 153 (228)
T PTZ00170 74 VSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEPGFGG 153 (228)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcccCCCC
Confidence 6678888899999999999999753110 0 01111
Q ss_pred CCC----HHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 318 LAS----WEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 318 ~~~----~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
... .+.++++++.. ...|...|||+ .+.+..+. +.|+|.+++||++...++
T Consensus 154 q~~~~~~~~ki~~~~~~~~~~~I~VdGGI~-~~ti~~~~-~aGad~iVvGsaI~~a~d 209 (228)
T PTZ00170 154 QSFMHDMMPKVRELRKRYPHLNIQVDGGIN-LETIDIAA-DAGANVIVAGSSIFKAKD 209 (228)
T ss_pred cEecHHHHHHHHHHHHhcccCeEEECCCCC-HHHHHHHH-HcCCCEEEEchHHhCCCC
Confidence 111 24455555544 46788899997 46787877 789999999998766544
No 240
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=97.11 E-value=0.16 Score=48.71 Aligned_cols=179 Identities=13% Similarity=0.134 Sum_probs=99.2
Q ss_pred cCCCchHHHHHHHHhCCccceecccc--chhhhcChhHHHHHHhcCCCC-CCeeeeeccCCHHHHHHHHHhhCCc-CcEE
Q psy7343 157 VDASELPWRLLSRRYGSHLCYTPMVS--AHQFIADKKLRQEILMSTPED-RPLIIQFCGNDSKNLTEAAKLAEPH-CDGI 232 (487)
Q Consensus 157 a~~td~~fr~i~~~~Ga~l~~t~~v~--~~~Ll~~~~~~~~~l~~~~~~-~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~I 232 (487)
.|+++..-...+.++|++.+. +|. .+.=.-+++...++.+..+.. .+|.| +...+++...++++ +. .|.|
T Consensus 8 CGi~~~eda~~~~~~Gad~iG--fI~~~~S~R~V~~~~a~~i~~~~~~~i~~VgV-f~~~~~~~i~~~~~---~~~~d~v 81 (210)
T PRK01222 8 CGITTPEDAEAAAELGADAIG--FVFYPKSPRYVSPEQAAELAAALPPFVKVVGV-FVNASDEEIDEIVE---TVPLDLL 81 (210)
T ss_pred CCCCcHHHHHHHHHcCCCEEE--EccCCCCCCcCCHHHHHHHHHhCCCCCCEEEE-EeCCCHHHHHHHHH---hcCCCEE
Confidence 456665545677788886542 221 111112333445555433322 23332 22446666655544 44 5666
Q ss_pred EeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHH-cCCcEEEEEccccCC
Q psy7343 233 DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLER-AGCQLLAVHGRTVDQ 311 (487)
Q Consensus 233 diN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~-~G~d~I~VhgRt~~~ 311 (487)
+||... +++.+ +.+++..+++++-.+++... .++....+. ..+|++.+..... .
T Consensus 82 QLHg~e----------------~~~~~----~~l~~~~~~~iik~i~v~~~----~~l~~~~~~~~~~d~~L~Ds~~~-~ 136 (210)
T PRK01222 82 QLHGDE----------------TPEFC----RQLKRRYGLPVIKALRVRSA----GDLEAAAAYYGDADGLLLDAYVG-L 136 (210)
T ss_pred EECCCC----------------CHHHH----HHHHhhcCCcEEEEEecCCH----HHHHHHHhhhccCCEEEEcCCCC-C
Confidence 665322 33433 34555557787766655321 122222222 3589999965543 2
Q ss_pred CCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 312 RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 312 ~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
.|+..-..+|+.+. +.++.|++.+|||+ ++.+.++++..+..||-+.+|.-..|.
T Consensus 137 ~GGtG~~~dw~~l~---~~~~~p~~LAGGi~-peNv~~ai~~~~p~gvDvsSgvE~~~G 191 (210)
T PRK01222 137 PGGTGKTFDWSLLP---AGLAKPWILAGGLN-PDNVAEAIRQVRPYGVDVSSGVESAPG 191 (210)
T ss_pred CCCCCCccchHHhh---hccCCCEEEECCCC-HHHHHHHHHhcCCCEEEecCceECCCC
Confidence 23222234788762 12367999999995 788988886668999999998876664
No 241
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=97.10 E-value=0.11 Score=49.83 Aligned_cols=181 Identities=16% Similarity=0.250 Sum_probs=105.1
Q ss_pred cCCCchHHHHHHHHhCCccceeccccch--hhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHHHHHhhCCcCcEEE
Q psy7343 157 VDASELPWRLLSRRYGSHLCYTPMVSAH--QFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTEAAKLAEPHCDGID 233 (487)
Q Consensus 157 a~~td~~fr~i~~~~Ga~l~~t~~v~~~--~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~Id 233 (487)
+|+|...=...+...|++.. .+|... .=.-+++.++++.+..+. .+ .|=++ ..+.+++.+++.... .|.|+
T Consensus 7 CGlt~~eda~~a~~~gad~i--G~If~~~SpR~Vs~~~a~~i~~~v~~-~~-~VgVf~n~~~~~i~~i~~~~~--ld~VQ 80 (208)
T COG0135 7 CGLTRLEDAKAAAKAGADYI--GFIFVPKSPRYVSPEQAREIASAVPK-VK-VVGVFVNESIEEILEIAEELG--LDAVQ 80 (208)
T ss_pred CCCCCHHHHHHHHHcCCCEE--EEEEcCCCCCcCCHHHHHHHHHhCCC-CC-EEEEECCCCHHHHHHHHHhcC--CCEEE
Confidence 35554433345556676432 222211 111133445555554332 22 22233 445555555444332 44444
Q ss_pred eecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCC
Q psy7343 234 INIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG 313 (487)
Q Consensus 234 iN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g 313 (487)
| ||. .+++.+.+ +++..++||+--+++....+ .........-+|.+++......+.|
T Consensus 81 l----------HG~------e~~~~~~~----l~~~~~~~v~kai~v~~~~~---~~~~~~~~~~~d~~LlDa~~~~~~G 137 (208)
T COG0135 81 L----------HGD------EDPEYIDQ----LKEELGVPVIKAISVSEEGD---LELAAREEGPVDAILLDAKVPGLPG 137 (208)
T ss_pred E----------CCC------CCHHHHHH----HHhhcCCceEEEEEeCCccc---hhhhhhccCCccEEEEcCCCCCCCC
Confidence 4 443 46676665 45455788887776543222 2233344556999999655544444
Q ss_pred CCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCC-cEEEeccccccCcc
Q psy7343 314 MNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGV-AGVMTAEGNLYNPA 370 (487)
Q Consensus 314 ~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Ga-d~VmiGRa~l~~P~ 370 (487)
+..-.-||+.+... ....|++.+|||+ ++.+.++++ .++ .+|=+.+|.-.+|-
T Consensus 138 GtG~~fDW~~l~~~--~~~~~~~LAGGL~-p~NV~~ai~-~~~p~gvDvSSGVE~~pG 191 (208)
T COG0135 138 GTGQTFDWNLLPKL--RLSKPVMLAGGLN-PDNVAEAIA-LGPPYGVDVSSGVESSPG 191 (208)
T ss_pred CCCcEECHHHhccc--cccCCEEEECCCC-HHHHHHHHH-hcCCceEEeccccccCCC
Confidence 44445689888776 4678899999994 899999994 555 99999999999983
No 242
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=97.03 E-value=0.018 Score=57.93 Aligned_cols=153 Identities=13% Similarity=0.139 Sum_probs=92.3
Q ss_pred CCCCCeeeeec-cCCHHHHHHHHHhhCCc-CcEEEeecCC-CcceeeccCccccccCChHHHHHHHHHHhhh-ccCcEEE
Q psy7343 201 PEDRPLIIQFC-GNDSKNLTEAAKLAEPH-CDGIDINIGC-PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA-VQVPVSC 276 (487)
Q Consensus 201 ~~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~-~d~IdiN~Gc-P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~-~~iPV~v 276 (487)
....||++-+- |.++.++.+.++.+++. +.+|.|-=.. |....--+..+....-+.+...+.+++++++ .+.++.+
T Consensus 76 a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~I 155 (285)
T TIGR02320 76 VTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMI 155 (285)
T ss_pred hcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEE
Confidence 34689998876 56888888888877776 7777773221 1110001111122233556666666666655 4556666
Q ss_pred Eeec-----ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-----CCcEEEcCCCCCHHH
Q psy7343 277 KIRI-----YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-----TIPVIANGNIQCLAD 346 (487)
Q Consensus 277 KiR~-----~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-----~iPVi~nGgI~s~~d 346 (487)
+-|. ....++..+-++...++|+|.|.+++. ..+.+.+.++.+.+ ++|++.+.+-.-.-.
T Consensus 156 iARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~----------~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~ 225 (285)
T TIGR02320 156 IARVESLILGKGMEDALKRAEAYAEAGADGIMIHSR----------KKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTP 225 (285)
T ss_pred EEecccccccCCHHHHHHHHHHHHHcCCCEEEecCC----------CCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCC
Confidence 6662 224557777788889999999999531 12345566665555 468887653111113
Q ss_pred HHHHHHhcCCcEEEeccc
Q psy7343 347 VEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 347 a~~~l~~~Gad~VmiGRa 364 (487)
+.++- +.|++.|..|..
T Consensus 226 ~~eL~-~lG~~~v~~~~~ 242 (285)
T TIGR02320 226 TDEFR-DAGISVVIYANH 242 (285)
T ss_pred HHHHH-HcCCCEEEEhHH
Confidence 44554 689999988854
No 243
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=97.02 E-value=0.0064 Score=62.69 Aligned_cols=83 Identities=18% Similarity=0.169 Sum_probs=60.4
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCC-CCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQ-RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~-~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
+..+..++ ..+.+.|+|+|.+..-.... ++.. .+..++.++.+++..++||++-|||. .+++.+++ ..|+++|.+
T Consensus 246 S~Hs~~e~-~~A~~~GaDYI~lGPvf~T~tKp~~-~~~Gle~l~~~~~~~~iPv~AiGGI~-~~ni~~l~-~~Ga~gVAv 321 (347)
T PRK02615 246 STTNPEEM-AKAIAEGADYIGVGPVFPTPTKPGK-APAGLEYLKYAAKEAPIPWFAIGGID-KSNIPEVL-QAGAKRVAV 321 (347)
T ss_pred ecCCHHHH-HHHHHcCCCEEEECCCcCCCCCCCC-CCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHH-HcCCcEEEE
Confidence 44455554 44556799999983221111 1111 24568999999999999999999995 88999888 799999999
Q ss_pred ccccccCc
Q psy7343 362 AEGNLYNP 369 (487)
Q Consensus 362 GRa~l~~P 369 (487)
+++++..+
T Consensus 322 isaI~~a~ 329 (347)
T PRK02615 322 VRAIMGAE 329 (347)
T ss_pred eHHHhCCC
Confidence 99998643
No 244
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.00 E-value=0.03 Score=53.41 Aligned_cols=121 Identities=15% Similarity=0.152 Sum_probs=85.7
Q ss_pred CChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCC-CHHHHHHHHhhCC
Q psy7343 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA-SWEHITAVRKALT 332 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~-~~~~i~~i~~~~~ 332 (487)
.+...+...++..++ .++-+.+-+ .+..++.+.++.+++.|+|.+.+|-....|. .|.. .|+.+..+++..+
T Consensus 90 A~~~TI~~~i~~A~~-~~~~v~iDl---~~~~~~~~~~~~l~~~gvd~~~~H~g~D~q~---~G~~~~~~~l~~ik~~~~ 162 (217)
T COG0269 90 ADDATIKKAIKVAKE-YGKEVQIDL---IGVWDPEQRAKWLKELGVDQVILHRGRDAQA---AGKSWGEDDLEKIKKLSD 162 (217)
T ss_pred CCHHHHHHHHHHHHH-cCCeEEEEe---ecCCCHHHHHHHHHHhCCCEEEEEecccHhh---cCCCccHHHHHHHHHhhc
Confidence 466777777776554 466666654 3556789999999999999999984333332 2333 2678888888775
Q ss_pred --CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccccCCCCCcHHHHHHHHHHHH
Q psy7343 333 --IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVA 391 (487)
Q Consensus 333 --iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf~~~~~~~~~~~~~~l~~~~ 391 (487)
..|-..|||. ++++..+. ..|++.|.+||++-...+- .+..+++.+.+.
T Consensus 163 ~g~~vAVaGGI~-~~~i~~~~-~~~~~ivIvGraIt~a~dp--------~~~a~~~~~~i~ 213 (217)
T COG0269 163 LGAKVAVAGGIT-PEDIPLFK-GIGADIVIVGRAITGAKDP--------AEAARKFKEEID 213 (217)
T ss_pred cCceEEEecCCC-HHHHHHHh-cCCCCEEEECchhcCCCCH--------HHHHHHHHHHHh
Confidence 7888999995 89999888 7899999999987654332 344555555443
No 245
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=96.96 E-value=0.006 Score=60.18 Aligned_cols=137 Identities=15% Similarity=0.190 Sum_probs=86.9
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~ 282 (487)
+.|+-.|=+--|+.+..++... ..|+|=|..+. -+.+.+.++++... .+++-+.+-+
T Consensus 109 ~~PvL~KDFIid~~QI~eA~~~---GADaVLLI~~~---------------L~~~~l~~l~~~a~-~lGle~lVEV---- 165 (254)
T PF00218_consen 109 DLPVLRKDFIIDPYQIYEARAA---GADAVLLIAAI---------------LSDDQLEELLELAH-SLGLEALVEV---- 165 (254)
T ss_dssp SS-EEEES---SHHHHHHHHHT---T-SEEEEEGGG---------------SGHHHHHHHHHHHH-HTT-EEEEEE----
T ss_pred CCCcccccCCCCHHHHHHHHHc---CCCEeehhHHh---------------CCHHHHHHHHHHHH-HcCCCeEEEE----
Confidence 5788877554466555544321 23444333222 13566677776544 4577777765
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
.+..|+ +...++|++.|.|-.|.-. +-..+.+...++...+ ++.+|+-+||.|.+|+.++. ..|+|+|.
T Consensus 166 --h~~~El-~~al~~~a~iiGINnRdL~-----tf~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~-~~G~davL 236 (254)
T PF00218_consen 166 --HNEEEL-ERALEAGADIIGINNRDLK-----TFEVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLA-RAGADAVL 236 (254)
T ss_dssp --SSHHHH-HHHHHTT-SEEEEESBCTT-----TCCBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHC-TTT-SEEE
T ss_pred --CCHHHH-HHHHHcCCCEEEEeCcccc-----CcccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHH-HCCCCEEE
Confidence 234444 4444789999999767322 2345677777887766 57889999999999999998 79999999
Q ss_pred eccccccCccc
Q psy7343 361 TAEGNLYNPAL 371 (487)
Q Consensus 361 iGRa~l~~P~l 371 (487)
||+++|..|+.
T Consensus 237 VGe~lm~~~d~ 247 (254)
T PF00218_consen 237 VGEALMRSPDP 247 (254)
T ss_dssp ESHHHHTSSSH
T ss_pred ECHHHhCCCCH
Confidence 99999999875
No 246
>KOG2550|consensus
Probab=96.95 E-value=0.0024 Score=65.62 Aligned_cols=101 Identities=24% Similarity=0.295 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc-------cCC--CCCCCCCCCHHHHH
Q psy7343 256 WPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT-------VDQ--RGMNTGLASWEHIT 325 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt-------~~~--~g~~~g~~~~~~i~ 325 (487)
-..-.++++.+++.. .+.|++- ++ -+.+-++.|.++|+|++-| |-+ ++- -|.-.+.+-++ +.
T Consensus 276 S~~qiemik~iK~~yP~l~ViaG-----NV-VT~~qa~nLI~aGaDgLrV-GMGsGSiCiTqevma~GrpQ~TAVy~-va 347 (503)
T KOG2550|consen 276 SIYQLEMIKYIKETYPDLQIIAG-----NV-VTKEQAANLIAAGADGLRV-GMGSGSICITQKVMACGRPQGTAVYK-VA 347 (503)
T ss_pred chhHHHHHHHHHhhCCCceeecc-----ce-eeHHHHHHHHHccCceeEe-ccccCceeeeceeeeccCCcccchhh-HH
Confidence 345567788888776 3445542 33 3445567888999999988 421 111 11112223232 34
Q ss_pred HHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 326 ~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
+.....++|||+.|||.+.-++.+.+ ..||+.||+|-=+
T Consensus 348 ~~A~q~gvpviADGGiq~~Ghi~KAl-~lGAstVMmG~lL 386 (503)
T KOG2550|consen 348 EFANQFGVPCIADGGIQNVGHVVKAL-GLGASTVMMGGLL 386 (503)
T ss_pred HHHHhcCCceeecCCcCccchhHhhh-hcCchhheeccee
Confidence 55566799999999999999999999 7999999999533
No 247
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.95 E-value=0.0085 Score=59.79 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh-----
Q psy7343 258 LLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA----- 330 (487)
Q Consensus 258 ~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~----- 330 (487)
.+.+.++.+|+..+ .+|.+- .++.+++. .+.++|+|.|++. ..+.+.++++.+.
T Consensus 167 ~i~~~v~~~k~~~p~~~~I~VE------v~tleea~-~A~~~GaDiI~LD------------n~~~e~l~~~v~~~~~~~ 227 (273)
T PRK05848 167 DLKEFIQHARKNIPFTAKIEIE------CESLEEAK-NAMNAGADIVMCD------------NMSVEEIKEVVAYRNANY 227 (273)
T ss_pred cHHHHHHHHHHhCCCCceEEEE------eCCHHHHH-HHHHcCCCEEEEC------------CCCHHHHHHHHHHhhccC
Confidence 34566777776654 345553 34455544 4557999999971 1245556655443
Q ss_pred CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 331 LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 331 ~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
.++.+.++||| |++.+.++. ++|+|.+.+|.....-|++
T Consensus 228 ~~~~ieAsGgI-t~~ni~~ya-~~GvD~IsvG~l~~sa~~~ 266 (273)
T PRK05848 228 PHVLLEASGNI-TLENINAYA-KSGVDAISSGSLIHQATWI 266 (273)
T ss_pred CCeEEEEECCC-CHHHHHHHH-HcCCCEEEeChhhcCCCcc
Confidence 25569999999 999999998 7999999999866544443
No 248
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=96.93 E-value=0.0029 Score=59.12 Aligned_cols=77 Identities=19% Similarity=0.211 Sum_probs=55.1
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccC-CCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVD-QRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~-~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
.+..+ ++.+.+.|+|++.+..--.. .++.+ .+..|+.+.++++..++||++-||| +.+++.++. ++|++||.+.+
T Consensus 103 h~~~e-~~~a~~~g~dYv~~gpvf~T~sk~~~-~~~g~~~l~~~~~~~~~pv~AlGGI-~~~~i~~l~-~~Ga~gvAvi~ 178 (180)
T PF02581_consen 103 HSLEE-AREAEELGADYVFLGPVFPTSSKPGA-PPLGLDGLREIARASPIPVYALGGI-TPENIPELR-EAGADGVAVIS 178 (180)
T ss_dssp SSHHH-HHHHHHCTTSEEEEETSS--SSSSS--TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHH-HTT-SEEEESH
T ss_pred CcHHH-HHHhhhcCCCEEEECCccCCCCCccc-cccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHH-HcCCCEEEEEe
Confidence 34455 77778899999999332111 11222 3456899999999999999999999 688899888 79999999987
Q ss_pred cc
Q psy7343 364 GN 365 (487)
Q Consensus 364 a~ 365 (487)
++
T Consensus 179 aI 180 (180)
T PF02581_consen 179 AI 180 (180)
T ss_dssp HH
T ss_pred eC
Confidence 63
No 249
>PRK04302 triosephosphate isomerase; Provisional
Probab=96.93 E-value=0.011 Score=57.17 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCC----HHHHHHHHhhC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS----WEHITAVRKAL 331 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~----~~~i~~i~~~~ 331 (487)
.+.+.+.++..++ .++.+++-+ .+..+ ++.+.+.|.+.|-+-+|.....+.-...+. .+.++.+++..
T Consensus 100 ~~e~~~~v~~a~~-~Gl~~I~~v------~~~~~-~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~ 171 (223)
T PRK04302 100 LADIEAVVERAKK-LGLESVVCV------NNPET-SAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVN 171 (223)
T ss_pred HHHHHHHHHHHHH-CCCeEEEEc------CCHHH-HHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhcc
Confidence 4446667766655 466555432 22333 344667788888764542211110000011 24445566644
Q ss_pred -CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 332 -TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 332 -~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
++||++.|||.+.+++.+++ ..|+|||.+|++++..+++
T Consensus 172 ~~~pvi~GggI~~~e~~~~~~-~~gadGvlVGsa~l~~~~~ 211 (223)
T PRK04302 172 PDVKVLCGAGISTGEDVKAAL-ELGADGVLLASGVVKAKDP 211 (223)
T ss_pred CCCEEEEECCCCCHHHHHHHH-cCCCCEEEEehHHhCCcCH
Confidence 79999999999999999998 7999999999999976554
No 250
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.92 E-value=0.0095 Score=59.87 Aligned_cols=94 Identities=17% Similarity=0.323 Sum_probs=61.9
Q ss_pred HHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh-----hCCC
Q psy7343 259 LTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK-----ALTI 333 (487)
Q Consensus 259 i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~-----~~~i 333 (487)
+.+.++.+++..+....+-+ +.++.+++.+.+ ++|+|.|++ +. ...+.++++.+ .-++
T Consensus 182 i~~av~~~r~~~~~~~~I~V----Ev~tleea~eA~-~~GaD~I~L-Dn-----------~~~e~l~~av~~~~~~~~~i 244 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEV----ETETLEQVQEAL-EYGADIIML-DN-----------MPVDLMQQAVQLIRQQNPRV 244 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEE----ECCCHHHHHHHH-HcCCCEEEE-CC-----------CCHHHHHHHHHHHHhcCCCe
Confidence 45556666665542222222 445566665544 799999999 31 12233333332 3478
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
|+.++||| +.+.+.++. .+|+|++.+|.....-|++
T Consensus 245 ~leAsGGI-t~~ni~~ya-~tGvD~Isvgsl~~sa~~~ 280 (288)
T PRK07428 245 KIEASGNI-TLETIRAVA-ETGVDYISSSAPITRSPWL 280 (288)
T ss_pred EEEEECCC-CHHHHHHHH-HcCCCEEEEchhhhCCCcc
Confidence 99999999 589999998 7999999999977755544
No 251
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=96.91 E-value=0.023 Score=58.40 Aligned_cols=109 Identities=20% Similarity=0.201 Sum_probs=73.2
Q ss_pred cCChHHHHHHHHHHhh-hccCcEEEEeecccccc-cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCH----HHHHH
Q psy7343 253 QDDWPLLTNLVSSLRQ-AVQVPVSCKIRIYQDVN-KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW----EHITA 326 (487)
Q Consensus 253 ~~d~~~i~eiv~~v~~-~~~iPV~vKiR~~~d~~-~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~----~~i~~ 326 (487)
..+++..... +.+++ ..++|+++|+....... ...++.+..+..++|++.+|--.........|..++ +.++.
T Consensus 95 ~~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~ 173 (333)
T TIGR02151 95 LKDPETADTF-EVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAE 173 (333)
T ss_pred ccChhhHhHH-HHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHH
Confidence 4578876666 66776 56899999984422211 255677777777889998864221111112233334 78889
Q ss_pred HHhhCCCcEEE--cCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 327 VRKALTIPVIA--NGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 327 i~~~~~iPVi~--nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
+++.+++||+. +|.-.+.+.++.+. +.|+|+|.++-
T Consensus 174 i~~~~~vPVivK~~g~g~~~~~a~~L~-~aGvd~I~Vsg 211 (333)
T TIGR02151 174 ICSQLSVPVIVKEVGFGISKEVAKLLA-DAGVSAIDVAG 211 (333)
T ss_pred HHHhcCCCEEEEecCCCCCHHHHHHHH-HcCCCEEEECC
Confidence 99999999986 56657888887766 79999999964
No 252
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.90 E-value=0.015 Score=55.95 Aligned_cols=144 Identities=14% Similarity=0.136 Sum_probs=90.4
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcc------eeec-cC-----ccccccCChHHHH----------
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQM------VAKR-GH-----YGAYLQDDWPLLT---------- 260 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~------i~~~-gr-----~G~~l~~d~~~i~---------- 260 (487)
.+++.=+++.+.++....++.+.+. ...+||-+-.|.. +..+ +. .|+.-.-+.+.+.
T Consensus 13 ~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi 92 (213)
T PRK06552 13 NGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI 92 (213)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE
Confidence 5677777888888888888766655 7777776665541 1110 00 0111012333333
Q ss_pred -------HHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC-
Q psy7343 261 -------NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT- 332 (487)
Q Consensus 261 -------eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~- 332 (487)
++++..++ .++|++- ...+..|+.+. .+.|+|.|.+... +..-.++++.++..+.
T Consensus 93 vsP~~~~~v~~~~~~-~~i~~iP------G~~T~~E~~~A-~~~Gad~vklFPa---------~~~G~~~ik~l~~~~p~ 155 (213)
T PRK06552 93 VSPSFNRETAKICNL-YQIPYLP------GCMTVTEIVTA-LEAGSEIVKLFPG---------STLGPSFIKAIKGPLPQ 155 (213)
T ss_pred ECCCCCHHHHHHHHH-cCCCEEC------CcCCHHHHHHH-HHcCCCEEEECCc---------ccCCHHHHHHHhhhCCC
Confidence 33333222 2444443 33455665555 5699999998331 1112577888888875
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
+|+++.|||+ .+++.+++ ..|++++.+|..++
T Consensus 156 ip~~atGGI~-~~N~~~~l-~aGa~~vavgs~l~ 187 (213)
T PRK06552 156 VNVMVTGGVN-LDNVKDWF-AAGADAVGIGGELN 187 (213)
T ss_pred CEEEEECCCC-HHHHHHHH-HCCCcEEEEchHHh
Confidence 9999999997 78999999 79999999999885
No 253
>PRK06801 hypothetical protein; Provisional
Probab=96.90 E-value=0.028 Score=56.47 Aligned_cols=76 Identities=18% Similarity=0.321 Sum_probs=58.4
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCC--CCCHHHHHHHHhhCCCcEEEcCC--CCCHHHHHHHHHhcCCcEEEe
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTG--LASWEHITAVRKALTIPVIANGN--IQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g--~~~~~~i~~i~~~~~iPVi~nGg--I~s~~da~~~l~~~Gad~Vmi 361 (487)
+..+..+..+++|+|.+.+.-.+.... |.+ ..+++.++++++.+++|++.-|| |. .+++.+++ ..|++.|-+
T Consensus 157 ~pe~a~~f~~~tgvD~LAvaiGt~Hg~--y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~-~e~~~~~i-~~Gi~KINv 232 (286)
T PRK06801 157 DPQLARDFVDRTGIDALAVAIGNAHGK--YKGEPKLDFARLAAIHQQTGLPLVLHGGSGIS-DADFRRAI-ELGIHKINF 232 (286)
T ss_pred CHHHHHHHHHHHCcCEEEeccCCCCCC--CCCCCCCCHHHHHHHHHhcCCCEEEECCCCCC-HHHHHHHH-HcCCcEEEe
Confidence 446666677789999999832332222 444 35889999999999999999888 75 57888888 799999999
Q ss_pred cccc
Q psy7343 362 AEGN 365 (487)
Q Consensus 362 GRa~ 365 (487)
++.+
T Consensus 233 ~T~~ 236 (286)
T PRK06801 233 YTGM 236 (286)
T ss_pred hhHH
Confidence 9864
No 254
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=96.89 E-value=0.0095 Score=59.56 Aligned_cols=126 Identities=20% Similarity=0.186 Sum_probs=84.8
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+++.+ ++||++.+.-. +..+..+.+
T Consensus 16 D~~~~~~~i~~l~~~--------Gv-~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~-~~~~~i~~a 85 (281)
T cd00408 16 DLDALRRLVEFLIEA--------GV-DGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGAN-STREAIELA 85 (281)
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCc-cHHHHHHHH
Confidence 667777777766555 44 3444555567665445666677777777665 58888876222 445688999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE------cCCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA------NGNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~------nGgI~s~~da~~~l~ 352 (487)
+.+++.|+|++++....... .+.....+.++.+.+.+++||+. .|--.+++.+.++.+
T Consensus 86 ~~a~~~Gad~v~v~pP~y~~---~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~ 149 (281)
T cd00408 86 RHAEEAGADGVLVVPPYYNK---PSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE 149 (281)
T ss_pred HHHHHcCCCEEEECCCcCCC---CCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc
Confidence 99999999999995432111 11112347788888888999873 467778888888873
No 255
>PRK08005 epimerase; Validated
Probab=96.89 E-value=0.04 Score=52.89 Aligned_cols=148 Identities=14% Similarity=0.192 Sum_probs=92.0
Q ss_pred eeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccccc
Q psy7343 206 LIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDV 284 (487)
Q Consensus 206 v~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~ 284 (487)
++..|...|...+.+-.+.+++. .|.+.+..- .|.+. .+.-.=-++++++++.+++|+.+-. =+
T Consensus 3 i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvM-------DG~FV----PN~tfG~~~i~~l~~~t~~~~DvHL----Mv 67 (210)
T PRK08005 3 LHPSLASADPLRYAEALTALHDAPLGSLHLDIE-------DTSFI----NNITFGMKTIQAVAQQTRHPLSFHL----MV 67 (210)
T ss_pred EEeehhhCCHHHHHHHHHHHHHCCCCEEEEecc-------CCCcC----CccccCHHHHHHHHhcCCCCeEEEe----cc
Confidence 34556666777777777777665 555433311 11111 1111112345556666777877765 45
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccC-------------------------------------------CCCCCCCCCC-
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVD-------------------------------------------QRGMNTGLAS- 320 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~-------------------------------------------~~g~~~g~~~- 320 (487)
.+...+.+.+.++|+|.|++|--+.. -.+++.|...
T Consensus 68 ~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~ 147 (210)
T PRK08005 68 SSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFI 147 (210)
T ss_pred CCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccceec
Confidence 57888899999999999999874210 0122333322
Q ss_pred ---HHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 321 ---WEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 321 ---~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
++.++++++.. ...|..-|||+ .+.+.++. +.|||.+.+|+++..+++
T Consensus 148 ~~~~~KI~~l~~~~~~~~I~VDGGI~-~~~i~~l~-~aGad~~V~GsaiF~~~d 199 (210)
T PRK08005 148 AAMCEKVSQSREHFPAAECWADGGIT-LRAARLLA-AAGAQHLVIGRALFTTAN 199 (210)
T ss_pred HHHHHHHHHHHHhcccCCEEEECCCC-HHHHHHHH-HCCCCEEEEChHhhCCCC
Confidence 24555555544 34688999997 67788887 799999999998765443
No 256
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=96.87 E-value=0.0075 Score=62.32 Aligned_cols=119 Identities=15% Similarity=0.128 Sum_probs=72.4
Q ss_pred hhhcChhHHHHHHh----cCCCCCCeeeeecc-------CCHHHHHHHHHhhCCc--CcEEEeecCCCccee-eccCccc
Q psy7343 185 QFIADKKLRQEILM----STPEDRPLIIQFCG-------NDSKNLTEAAKLAEPH--CDGIDINIGCPQMVA-KRGHYGA 250 (487)
Q Consensus 185 ~Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~g-------~d~~~~~~aa~~~~~~--~d~IdiN~GcP~~i~-~~gr~G~ 250 (487)
.|.+......++++ ....+.+|.++|.. .+.++..++++.+++. .|.|+|+.|.-.... .+.....
T Consensus 186 slenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~ 265 (343)
T cd04734 186 SLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPS 265 (343)
T ss_pred CHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCC
Confidence 44444455556664 22233344555432 3467888999988876 699999877521110 0111111
Q ss_pred cccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc
Q psy7343 251 YLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV 309 (487)
Q Consensus 251 ~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~ 309 (487)
... ......++++.+++.+++||++++ ++.+..++.+.+++.++|.|++ ||..
T Consensus 266 ~~~-~~~~~~~~~~~ik~~~~ipvi~~G----~i~~~~~~~~~l~~~~~D~V~~-gR~~ 318 (343)
T cd04734 266 MGM-PPGPFLPLAARIKQAVDLPVFHAG----RIRDPAEAEQALAAGHADMVGM-TRAH 318 (343)
T ss_pred CCC-CcchhHHHHHHHHHHcCCCEEeeC----CCCCHHHHHHHHHcCCCCeeee-cHHh
Confidence 111 111223455667778899999998 6667788888888888999999 8853
No 257
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=96.86 E-value=0.0076 Score=63.19 Aligned_cols=130 Identities=17% Similarity=0.236 Sum_probs=81.9
Q ss_pred hhhcChhHHHHHHh----cCCCCCCeeeeecc---------------------CCHHHHHHHHHhhCCc-CcEEEeecCC
Q psy7343 185 QFIADKKLRQEILM----STPEDRPLIIQFCG---------------------NDSKNLTEAAKLAEPH-CDGIDINIGC 238 (487)
Q Consensus 185 ~Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~g---------------------~d~~~~~~aa~~~~~~-~d~IdiN~Gc 238 (487)
.|.+......++++ ....+.||+++|.. .+.++..++++.+++. .|.|+++.|.
T Consensus 196 slenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~ 275 (382)
T cd02931 196 SLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGS 275 (382)
T ss_pred CHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCC
Confidence 34444445555554 23446689999863 2457778889988876 8999999886
Q ss_pred CcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC
Q psy7343 239 PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL 318 (487)
Q Consensus 239 P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~ 318 (487)
........ .... .......++++.+++.+++||++++ ++.+..+..+.+++.++|.|++ ||...
T Consensus 276 ~~~~~~~~--~~~~-~~~~~~~~~~~~ik~~~~~pvi~~G----~i~~~~~~~~~l~~g~~D~V~~-gR~~l-------- 339 (382)
T cd02931 276 YDAWYWNH--PPMY-QKKGMYLPYCKALKEVVDVPVIMAG----RMEDPELASEAINEGIADMISL-GRPLL-------- 339 (382)
T ss_pred Cccccccc--CCcc-CCcchhHHHHHHHHHHCCCCEEEeC----CCCCHHHHHHHHHcCCCCeeee-chHhH--------
Confidence 22111000 0000 0111223456667888899999998 5557788888888888999999 88432
Q ss_pred CCHHHHHHHHhh
Q psy7343 319 ASWEHITAVRKA 330 (487)
Q Consensus 319 ~~~~~i~~i~~~ 330 (487)
++-++++++++.
T Consensus 340 adP~l~~k~~~g 351 (382)
T cd02931 340 ADPDVVNKIRRG 351 (382)
T ss_pred hCccHHHHHHcC
Confidence 233456666653
No 258
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=96.86 E-value=0.0045 Score=73.33 Aligned_cols=109 Identities=21% Similarity=0.250 Sum_probs=75.1
Q ss_pred ChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCC------CCCCCCCHH-HHHH
Q psy7343 255 DWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG------MNTGLASWE-HITA 326 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g------~~~g~~~~~-~i~~ 326 (487)
..+.+.+++..+|+.. +.||.+|+-.+..+ -+++.-+.++|+|.|+|.|....... .+.|.+ |+ .+.+
T Consensus 979 SieDL~qlI~~Lk~~~~~~~I~VKl~a~~~v---g~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP-~e~gL~~ 1054 (1485)
T PRK11750 979 SIEDLAQLIFDLKQVNPKALVSVKLVSEPGV---GTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSP-WELGLAE 1054 (1485)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEEccCCCc---cHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCcc-HHHHHHH
Confidence 4677788888888776 67999998443222 33444566799999999875321110 012222 32 2433
Q ss_pred HHhh-----C--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 327 VRKA-----L--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 327 i~~~-----~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
+.+. + ++.+++.||+.|+.|+.+++ ..|||.|.+||++|--
T Consensus 1055 ~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~-aLGAd~~~~gt~~lia 1102 (1485)
T PRK11750 1055 THQALVANGLRHKIRLQVDGGLKTGLDVIKAA-ILGAESFGFGTGPMVA 1102 (1485)
T ss_pred HHHHHHhcCCCcceEEEEcCCcCCHHHHHHHH-HcCCcccccchHHHHH
Confidence 3332 2 58999999999999999999 7999999999997754
No 259
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.82 E-value=0.014 Score=55.03 Aligned_cols=73 Identities=21% Similarity=0.279 Sum_probs=55.5
Q ss_pred cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 284 VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
..+..++. ...+.|+|+|-+.. |. ...-.+.++.++..+ ++|+++.||| |.+++.+++ +.|+++|.++
T Consensus 112 ~~t~~e~~-~A~~~Gadyv~~Fp-t~-------~~~G~~~l~~~~~~~~~ipvvaiGGI-~~~n~~~~l-~aGa~~vav~ 180 (187)
T PRK07455 112 ALTPTEIV-TAWQAGASCVKVFP-VQ-------AVGGADYIKSLQGPLGHIPLIPTGGV-TLENAQAFI-QAGAIAVGLS 180 (187)
T ss_pred cCCHHHHH-HHHHCCCCEEEECc-CC-------cccCHHHHHHHHhhCCCCcEEEeCCC-CHHHHHHHH-HCCCeEEEEe
Confidence 44556654 44568999998832 10 011357899999888 6999999999 679999999 6999999999
Q ss_pred ccccc
Q psy7343 363 EGNLY 367 (487)
Q Consensus 363 Ra~l~ 367 (487)
++++.
T Consensus 181 s~i~~ 185 (187)
T PRK07455 181 GQLFP 185 (187)
T ss_pred hhccc
Confidence 98764
No 260
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=96.82 E-value=0.047 Score=52.37 Aligned_cols=150 Identities=19% Similarity=0.280 Sum_probs=99.3
Q ss_pred CCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc
Q psy7343 204 RPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282 (487)
Q Consensus 204 ~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~ 282 (487)
..+...|...|...+.+-.+.++++ .|.|.+..-- |.+- .|.-.=-.+++++++.++.|+.+-.
T Consensus 4 ~~iapSILsaD~~~l~~el~~~~~agad~iH~DVMD-------ghFV----PNiTfGp~~v~~l~~~t~~p~DvHL---- 68 (220)
T COG0036 4 MKIAPSILSADFARLGEELKALEAAGADLIHIDVMD-------GHFV----PNITFGPPVVKALRKITDLPLDVHL---- 68 (220)
T ss_pred ceeeeehhhCCHhHHHHHHHHHHHcCCCEEEEeccC-------CCcC----CCcccCHHHHHHHhhcCCCceEEEE----
Confidence 3466677777888888877777765 6655443211 1111 1112223456667777788988876
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccC-------------------------------------------CCCCCCCCC
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVD-------------------------------------------QRGMNTGLA 319 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~-------------------------------------------~~g~~~g~~ 319 (487)
=+.+...+.+.+.++|+|.|++|.-... -.+++.|..
T Consensus 69 MV~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~ 148 (220)
T COG0036 69 MVENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQK 148 (220)
T ss_pred ecCCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccc
Confidence 5668899999999999999999873100 123344443
Q ss_pred C----HHHHHHHHhhCC----CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 320 S----WEHITAVRKALT----IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 320 ~----~~~i~~i~~~~~----iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
. .+.++++++..+ +-|-.-|||+ .+.+.++. +.|||.+..|+++..+++
T Consensus 149 Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~-~AGad~~VaGSalF~~~d 205 (220)
T COG0036 149 FIPEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLA-AAGADVFVAGSALFGADD 205 (220)
T ss_pred cCHHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHH-HcCCCEEEEEEEEeCCcc
Confidence 2 355666665543 4466889996 56777777 799999999999888877
No 261
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=96.76 E-value=0.026 Score=57.46 Aligned_cols=179 Identities=14% Similarity=0.068 Sum_probs=92.4
Q ss_pred CCceEEecCCCCCCHHHHHHHHHcCC-CeEEccceeccccccCcHHHHHHhhhCCCCCceeeeeccccCCCCCccccccc
Q psy7343 78 SPRFILAPMVDASELPWRLLSRRYGS-HLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPM 156 (487)
Q Consensus 78 ~~~~~LAPMag~td~pFR~l~~~~Ga-dl~~TEMi~a~~l~~~~~~~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lApm 156 (487)
+-++++|||.++|+..|=..+.+.|. +.+=......+.+- ...+.+.. ..+.|+.+-+... . |.
T Consensus 11 ~~Pii~apM~~~s~~~la~avs~aGglG~l~~~~~~~~~l~----~~i~~~~~-~t~~pfgvn~~~~----~------~~ 75 (307)
T TIGR03151 11 EYPIFQGGMAWVATGSLAAAVSNAGGLGIIGAGNAPPDVVR----KEIRKVKE-LTDKPFGVNIMLL----S------PF 75 (307)
T ss_pred CCCEEcCCCCCCCCHHHHHHHHhCCCcceeccccCCHHHHH----HHHHHHHH-hcCCCcEEeeecC----C------CC
Confidence 44899999999999999988888875 43222222222221 11111211 1256776654211 1 10
Q ss_pred cCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEee
Q psy7343 157 VDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDIN 235 (487)
Q Consensus 157 a~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN 235 (487)
....-.+..+.|+.+..+-. -.+....+.++. .+..+.+++. +. +.++.+++. +|+|-++
T Consensus 76 ----~~~~~~~~~~~~v~~v~~~~-------g~p~~~i~~lk~--~g~~v~~~v~--s~----~~a~~a~~~GaD~Ivv~ 136 (307)
T TIGR03151 76 ----VDELVDLVIEEKVPVVTTGA-------GNPGKYIPRLKE--NGVKVIPVVA--SV----ALAKRMEKAGADAVIAE 136 (307)
T ss_pred ----HHHHHHHHHhCCCCEEEEcC-------CCcHHHHHHHHH--cCCEEEEEcC--CH----HHHHHHHHcCCCEEEEE
Confidence 01122334456755433211 122212222222 2455655542 22 233444444 6666554
Q ss_pred cCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcc
Q psy7343 236 IGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 236 ~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgR 307 (487)
.-- ..|..|. ..++.++.+ +++.+++||++.+ ++.+..+++..+. .|+|+|++ |.
T Consensus 137 g~e-----agGh~g~--~~~~~ll~~----v~~~~~iPviaaG----GI~~~~~~~~al~-~GA~gV~i-Gt 191 (307)
T TIGR03151 137 GME-----SGGHIGE--LTTMALVPQ----VVDAVSIPVIAAG----GIADGRGMAAAFA-LGAEAVQM-GT 191 (307)
T ss_pred Ccc-----cCCCCCC--CcHHHHHHH----HHHHhCCCEEEEC----CCCCHHHHHHHHH-cCCCEeec-ch
Confidence 210 0111111 124555555 5556689999998 7778888888886 89999999 54
No 262
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=96.75 E-value=0.037 Score=55.62 Aligned_cols=76 Identities=16% Similarity=0.296 Sum_probs=56.9
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCC--CCCCHHHHHHHHhhCCCcEEEcC--CCCCHHHHHHHHHhcCCcEEEe
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNT--GLASWEHITAVRKALTIPVIANG--NIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~--g~~~~~~i~~i~~~~~iPVi~nG--gI~s~~da~~~l~~~Gad~Vmi 361 (487)
+.+++.+..+++|+|.+.+.-.+.... |+ ...+++.++++++.+++|+++-| ||. .+++.+++ +.|+++|-+
T Consensus 154 ~~eea~~f~~~tgvD~Lavs~Gt~hg~--~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi~-~e~i~~~i-~~Gi~kiNv 229 (282)
T TIGR01859 154 DPDEAEQFVKETGVDYLAAAIGTSHGK--YKGEPGLDFERLKEIKELTNIPLVLHGASGIP-EEQIKKAI-KLGIAKINI 229 (282)
T ss_pred CHHHHHHHHHHHCcCEEeeccCccccc--cCCCCccCHHHHHHHHHHhCCCEEEECCCCCC-HHHHHHHH-HcCCCEEEE
Confidence 566666666679999999621221111 22 33578999999999999999999 885 57788888 689999999
Q ss_pred cccc
Q psy7343 362 AEGN 365 (487)
Q Consensus 362 GRa~ 365 (487)
++.+
T Consensus 230 ~T~l 233 (282)
T TIGR01859 230 DTDC 233 (282)
T ss_pred CcHH
Confidence 9854
No 263
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=96.75 E-value=0.016 Score=57.74 Aligned_cols=83 Identities=23% Similarity=0.300 Sum_probs=57.1
Q ss_pred HHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEE
Q psy7343 261 NLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVI 336 (487)
Q Consensus 261 eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi 336 (487)
.-++.+|+..+ .+|.+- ..+.++ ++.+.+.|+|+|++ +. ...+.++++.+.+ .+|+.
T Consensus 166 ~av~~~r~~~~~~~~Igve------v~t~ee-a~~A~~~gaDyI~l-d~-----------~~~e~lk~~v~~~~~~ipi~ 226 (265)
T TIGR00078 166 KAVKRARAAAPFALKIEVE------VESLEE-AEEAAEAGADIIML-DN-----------MKPEEIKEAVQLLKGRVLLE 226 (265)
T ss_pred HHHHHHHHhCCCCCeEEEE------eCCHHH-HHHHHHcCCCEEEE-CC-----------CCHHHHHHHHHHhcCCCcEE
Confidence 34555666553 334443 334444 55567899999999 22 2235666666655 38999
Q ss_pred EcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 337 ANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 337 ~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+.||| +.+.+.++. ++|+|++.+|.-
T Consensus 227 AsGGI-~~~ni~~~a-~~Gvd~Isvgai 252 (265)
T TIGR00078 227 ASGGI-TLDNLEEYA-ETGVDVISSGAL 252 (265)
T ss_pred EECCC-CHHHHHHHH-HcCCCEEEeCHH
Confidence 99999 589999998 799999999643
No 264
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=96.70 E-value=0.063 Score=52.05 Aligned_cols=145 Identities=15% Similarity=0.222 Sum_probs=93.1
Q ss_pred eeeeeccCCHHHHHHHHHhhCCc-CcEEEee--cCCCcceeeccCccccccCChHHHHHHHHHHhhh-ccCcEEEEeecc
Q psy7343 206 LIIQFCGNDSKNLTEAAKLAEPH-CDGIDIN--IGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA-VQVPVSCKIRIY 281 (487)
Q Consensus 206 v~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN--~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~-~~iPV~vKiR~~ 281 (487)
++..|...|...+.+-.+.+++. .|.+.+. =|+ +- .+.-+=.++++++++. +++|+.+-+
T Consensus 6 i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~---------FV----PN~tfg~~~i~~lr~~~~~~~~dvHL--- 69 (223)
T PRK08745 6 IAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNH---------YV----PNLTIGPMVCQALRKHGITAPIDVHL--- 69 (223)
T ss_pred EEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCc---------cC----CCcccCHHHHHHHHhhCCCCCEEEEe---
Confidence 45666777888888777777765 5654443 232 11 1111112355567766 578887766
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccC-------------------------------------------CCCCCCCC
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVD-------------------------------------------QRGMNTGL 318 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~-------------------------------------------~~g~~~g~ 318 (487)
=+.+...+.+.+.++|+|.|++|.-... -.+++.|.
T Consensus 70 -Mv~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ 148 (223)
T PRK08745 70 -MVEPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQ 148 (223)
T ss_pred -ccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCc
Confidence 4557888889999999999999874210 01233343
Q ss_pred CC----HHHHHHHHhhC-----CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCc
Q psy7343 319 AS----WEHITAVRKAL-----TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 319 ~~----~~~i~~i~~~~-----~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
.. ++.++++++.. ++.|-..|||+ .+.+.++. +.|||.+++|+++...+
T Consensus 149 ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~-~aGaDi~V~GSaiF~~~ 206 (223)
T PRK08745 149 AFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIA-AAGADTFVAGSAIFNAP 206 (223)
T ss_pred cccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHH-HcCCCEEEEChhhhCCC
Confidence 22 24555555532 46688999997 67888887 79999999999876443
No 265
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=96.67 E-value=0.088 Score=51.70 Aligned_cols=136 Identities=13% Similarity=0.152 Sum_probs=92.4
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~ 282 (487)
+.||..|=+--|+.++.++.. -.+|+|=+.... -+.+.+.++++... .+++-+.+-+
T Consensus 102 ~~PvL~KDFIid~~QI~ea~~---~GADavLLI~~~---------------L~~~~l~~l~~~a~-~lGle~LVEV---- 158 (247)
T PRK13957 102 KIPVLRKDFILDEIQIREARA---FGASAILLIVRI---------------LTPSQIKSFLKHAS-SLGMDVLVEV---- 158 (247)
T ss_pred CCCEEeccccCCHHHHHHHHH---cCCCEEEeEHhh---------------CCHHHHHHHHHHHH-HcCCceEEEE----
Confidence 579988866557777666553 224444332221 13556667666543 4577777765
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
...+-++...++|++.|.|-.|.-. +-..+.+...++...+ +..+|+-+||.|++|+.++. .. +|+|.
T Consensus 159 ---h~~~El~~a~~~ga~iiGINnRdL~-----t~~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~-~~-~davL 228 (247)
T PRK13957 159 ---HTEDEAKLALDCGAEIIGINTRDLD-----TFQIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFR-KL-VDAAL 228 (247)
T ss_pred ---CCHHHHHHHHhCCCCEEEEeCCCCc-----cceECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHH-Hh-CCEEE
Confidence 2333445566689999999666432 2235667777777766 56788899999999999987 45 99999
Q ss_pred eccccccCccc
Q psy7343 361 TAEGNLYNPAL 371 (487)
Q Consensus 361 iGRa~l~~P~l 371 (487)
||+++|..++.
T Consensus 229 vG~~lm~~~d~ 239 (247)
T PRK13957 229 IGTYFMEKKDI 239 (247)
T ss_pred ECHHHhCCCCH
Confidence 99999999874
No 266
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.63 E-value=0.022 Score=56.83 Aligned_cols=84 Identities=20% Similarity=0.258 Sum_probs=59.1
Q ss_pred HHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEE
Q psy7343 262 LVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIA 337 (487)
Q Consensus 262 iv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~ 337 (487)
-++.+|+..+ .++.+ ...+..+ ++.+.+.|+|.|++ +. ...+.++++.+.. ++|+.+
T Consensus 171 ~v~~~r~~~~~~~~Igv------ev~s~ee-a~~A~~~gaDyI~l-d~-----------~~~e~l~~~~~~~~~~ipi~A 231 (268)
T cd01572 171 AVRRARAAAPFTLKIEV------EVETLEQ-LKEALEAGADIIML-DN-----------MSPEELREAVALLKGRVLLEA 231 (268)
T ss_pred HHHHHHHhCCCCCeEEE------EECCHHH-HHHHHHcCCCEEEE-CC-----------cCHHHHHHHHHHcCCCCcEEE
Confidence 3455665553 23333 3345544 44556799999999 32 2356777777666 599999
Q ss_pred cCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 338 NGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 338 nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
.||| +.+.+.++. .+|+|++.+|.-..
T Consensus 232 iGGI-~~~ni~~~a-~~Gvd~Iav~sl~~ 258 (268)
T cd01572 232 SGGI-TLENIRAYA-ETGVDYISVGALTH 258 (268)
T ss_pred ECCC-CHHHHHHHH-HcCCCEEEEEeeec
Confidence 9999 589999998 79999999998554
No 267
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=96.60 E-value=0.022 Score=54.39 Aligned_cols=150 Identities=14% Similarity=0.100 Sum_probs=91.2
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcce----eeccCc-----cccccCChHHHHH-----------
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMV----AKRGHY-----GAYLQDDWPLLTN----------- 261 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i----~~~gr~-----G~~l~~d~~~i~e----------- 261 (487)
..+++.=+|+.++++..+.++.+.+. ++.|||.+..|... ..+..+ |+.-.-+.+.+.+
T Consensus 7 ~~~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fivs 86 (204)
T TIGR01182 7 EAKIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVS 86 (204)
T ss_pred hCCEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEC
Confidence 35677778888888888888877665 78888877665420 000011 1100123333333
Q ss_pred ------HHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCc
Q psy7343 262 ------LVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIP 334 (487)
Q Consensus 262 ------iv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iP 334 (487)
+++..++ .++|++- ...+..|+.. ..++|++.|-+..-. . +.| ..+++.++.-+ ++|
T Consensus 87 P~~~~~v~~~~~~-~~i~~iP------G~~TptEi~~-A~~~Ga~~vKlFPA~--~---~GG---~~yikal~~plp~i~ 150 (204)
T TIGR01182 87 PGLTPELAKHAQD-HGIPIIP------GVATPSEIML-ALELGITALKLFPAE--V---SGG---VKMLKALAGPFPQVR 150 (204)
T ss_pred CCCCHHHHHHHHH-cCCcEEC------CCCCHHHHHH-HHHCCCCEEEECCch--h---cCC---HHHHHHHhccCCCCc
Confidence 3332222 2344333 2335555544 445789988883311 0 111 35677777765 899
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
++..|||.. +++.+.+ +.|+.+|.+|+.+.....
T Consensus 151 ~~ptGGV~~-~N~~~~l-~aGa~~vg~Gs~L~~~~~ 184 (204)
T TIGR01182 151 FCPTGGINL-ANVRDYL-AAPNVACGGGSWLVPKDL 184 (204)
T ss_pred EEecCCCCH-HHHHHHH-hCCCEEEEEChhhcCchh
Confidence 999999964 8999999 799999999997775443
No 268
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=96.60 E-value=0.028 Score=56.93 Aligned_cols=125 Identities=18% Similarity=0.236 Sum_probs=84.9
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+..-|.+|....-..+.-.++++.+++.+ .+||++-+-- .+..+..+++
T Consensus 23 D~~a~~~lv~~li~~--------Gv-~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~-~~t~eai~la 92 (299)
T COG0329 23 DEEALRRLVEFLIAA--------GV-DGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS-NSTAEAIELA 92 (299)
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC-CcHHHHHHHH
Confidence 667778887776666 55 4566666677665445666677777777776 4788886511 1346789999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEE-Ec-----CCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI-AN-----GNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi-~n-----GgI~s~~da~~~l 351 (487)
+..++.|+|++++..--... .+....++.++.+.+.+++|+| +| |--.+++.+.++-
T Consensus 93 k~a~~~Gad~il~v~PyY~k---~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la 155 (299)
T COG0329 93 KHAEKLGADGILVVPPYYNK---PSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLA 155 (299)
T ss_pred HHHHhcCCCEEEEeCCCCcC---CChHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHh
Confidence 99999999999995431110 0111235778888888999976 45 5556777777665
No 269
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=96.59 E-value=0.11 Score=52.29 Aligned_cols=144 Identities=19% Similarity=0.269 Sum_probs=92.3
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-ec
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-RI 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R~ 280 (487)
+.||.+.+. +.|.+...++ +.. |. ..+-..+. .-.+..|.+..+++++..+ ..+++|-+-+ ++
T Consensus 77 ~VPV~lHLDHg~~~e~i~~a---i~~---------Gf-tSVM~DgS-~lp~eeNi~~Trevv~~Ah-~~gv~VEaElG~i 141 (285)
T PRK07709 77 TVPVAIHLDHGSSFEKCKEA---IDA---------GF-TSVMIDAS-HHPFEENVETTKKVVEYAH-ARNVSVEAELGTV 141 (285)
T ss_pred CCcEEEECCCCCCHHHHHHH---HHc---------CC-CEEEEeCC-CCCHHHHHHHHHHHHHHHH-HcCCEEEEEEecc
Confidence 369999987 5565444433 222 33 22323221 1122456677777777554 3477776643 23
Q ss_pred cc--c--------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC--CCHHHHHHHHhhCCCcEEEcCCCCCH-HHH
Q psy7343 281 YQ--D--------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL--ASWEHITAVRKALTIPVIANGNIQCL-ADV 347 (487)
Q Consensus 281 ~~--d--------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~--~~~~~i~~i~~~~~iPVi~nGgI~s~-~da 347 (487)
+. | ..+.++..+.++++|+|.+.|.=.|..+. |.+. -+++.+++|++.+++|++.-|+=..+ +++
T Consensus 142 gg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~--Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~ 219 (285)
T PRK07709 142 GGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGP--YKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADI 219 (285)
T ss_pred CCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccC--cCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHH
Confidence 22 1 24778888889999999998743333322 5443 47899999999999999987776666 567
Q ss_pred HHHHHhcCCcEEEeccc
Q psy7343 348 EACLAQTGVAGVMTAEG 364 (487)
Q Consensus 348 ~~~l~~~Gad~VmiGRa 364 (487)
.+++ ..|+.-|=|++.
T Consensus 220 ~~ai-~~Gi~KiNi~T~ 235 (285)
T PRK07709 220 EKAI-SLGTSKINVNTE 235 (285)
T ss_pred HHHH-HcCCeEEEeChH
Confidence 7787 788888877763
No 270
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.54 E-value=0.023 Score=56.70 Aligned_cols=90 Identities=26% Similarity=0.301 Sum_probs=59.0
Q ss_pred HHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC----CCc
Q psy7343 261 NLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL----TIP 334 (487)
Q Consensus 261 eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~----~iP 334 (487)
.-++.+|+..+ .++.+. ..+..++.+ ..+.|+|.|++ +. ...+.++++.+.+ ++|
T Consensus 169 ~~v~~~r~~~~~~~~I~ve------v~t~eea~~-A~~~gaD~I~l-d~-----------~~~e~l~~~v~~i~~~~~i~ 229 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVE------VETLEEAEE-ALEAGADIIML-DN-----------MSPEELKEAVKLLKGLPRVL 229 (269)
T ss_pred HHHHHHHHhCCCCCeEEEe------cCCHHHHHH-HHHcCCCEEEE-CC-----------CCHHHHHHHHHHhccCCCeE
Confidence 34555666553 334443 345555444 45689999999 22 1224455544444 789
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+.+.|||+ .+.+.++. .+|+|++.+|.....-|++
T Consensus 230 i~asGGIt-~~ni~~~a-~~Gad~Isvgal~~s~~~~ 264 (269)
T cd01568 230 LEASGGIT-LENIRAYA-ETGVDVISTGALTHSAPAL 264 (269)
T ss_pred EEEECCCC-HHHHHHHH-HcCCCEEEEcHHHcCCCcc
Confidence 99999996 78899988 7999999998655554443
No 271
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=96.52 E-value=0.053 Score=54.50 Aligned_cols=150 Identities=17% Similarity=0.191 Sum_probs=94.9
Q ss_pred CCCCCeeeeec-c-CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEE
Q psy7343 201 PEDRPLIIQFC-G-NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSC 276 (487)
Q Consensus 201 ~~~~Pv~Vqi~-g-~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~v 276 (487)
..+.||++-+- | .++.+..+.++.++++ +.+|.|-=....+ +.|..++.-+-+.+...+-+++++++. +.++.+
T Consensus 71 ~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK--~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~I 148 (285)
T TIGR02317 71 VTDLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPK--RCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVI 148 (285)
T ss_pred ccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCcc--ccCCCCCccccCHHHHHHHHHHHHHhccCCCEEE
Confidence 34689999986 3 3588888888888776 7777775332111 122222222234554444455555543 567888
Q ss_pred Eeecc----cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEc---CCCCCHHHHHH
Q psy7343 277 KIRIY----QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN---GNIQCLADVEA 349 (487)
Q Consensus 277 KiR~~----~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~n---GgI~s~~da~~ 349 (487)
+-|.. .+.++.++-++...++|+|.|.++|- .+.+.++++.+.++.|+.+| |+-.-.-++++
T Consensus 149 iARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g~-----------~~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~e 217 (285)
T TIGR02317 149 IARTDARAVEGLDAAIERAKAYVEAGADMIFPEAL-----------TSLEEFRQFAKAVKVPLLANMTEFGKTPLFTADE 217 (285)
T ss_pred EEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCCC-----------CCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHH
Confidence 88863 23456677778888999999999542 24677888988888998543 33211123455
Q ss_pred HHHhcCCcEEEeccc
Q psy7343 350 CLAQTGVAGVMTAEG 364 (487)
Q Consensus 350 ~l~~~Gad~VmiGRa 364 (487)
+- +.|++.|..|..
T Consensus 218 L~-~lGv~~v~~~~~ 231 (285)
T TIGR02317 218 LR-EAGYKMVIYPVT 231 (285)
T ss_pred HH-HcCCcEEEEchH
Confidence 54 689999998843
No 272
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.50 E-value=0.031 Score=55.94 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=53.2
Q ss_pred cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 284 VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 284 ~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
.++..+ ++...+.|+|.|++ +. ...+.++++.+.. ++|+.++||| +.+.+.++. .+|+|++.+
T Consensus 196 v~tlee-a~eA~~~gaD~I~L-D~-----------~~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a-~tGvD~Isv 260 (277)
T PRK05742 196 VESLDE-LRQALAAGADIVML-DE-----------LSLDDMREAVRLTAGRAKLEASGGI-NESTLRVIA-ETGVDYISI 260 (277)
T ss_pred eCCHHH-HHHHHHcCCCEEEE-CC-----------CCHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHH-HcCCCEEEE
Confidence 344444 45555889999988 32 2355666666655 8999999999 589999998 799999999
Q ss_pred ccccccCccc
Q psy7343 362 AEGNLYNPAL 371 (487)
Q Consensus 362 GRa~l~~P~l 371 (487)
|.-...-|++
T Consensus 261 g~lt~s~~~~ 270 (277)
T PRK05742 261 GAMTKDVKAV 270 (277)
T ss_pred ChhhcCCccc
Confidence 9754444443
No 273
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.49 E-value=0.035 Score=53.39 Aligned_cols=85 Identities=18% Similarity=0.234 Sum_probs=61.1
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCC--CCCCCCCCCHHHHHHHHhh-CCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQ--RGMNTGLASWEHITAVRKA-LTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~--~g~~~g~~~~~~i~~i~~~-~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
+..+..+ +..+++.|+|++.+ |-.... +........++.++++.+. .++||++-|||+ .+++.+++ .+|++||
T Consensus 108 S~H~~~e-~~~A~~~gaDYi~l-gpvf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~-~~ni~~l~-~~Ga~Gi 183 (211)
T PRK03512 108 STHDDME-IDVALAARPSYIAL-GHVFPTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGIS-LERAPAVL-ATGVGSI 183 (211)
T ss_pred eCCCHHH-HHHHhhcCCCEEEE-CCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCCC-HHHHHHHH-HcCCCEE
Confidence 4445555 45556789999999 532211 1112333467888888776 489999999997 78899999 7999999
Q ss_pred EeccccccCccc
Q psy7343 360 MTAEGNLYNPAL 371 (487)
Q Consensus 360 miGRa~l~~P~l 371 (487)
.+-++++..++.
T Consensus 184 Avisai~~~~d~ 195 (211)
T PRK03512 184 AVVSAITQAADW 195 (211)
T ss_pred EEhhHhhCCCCH
Confidence 999998866543
No 274
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=96.48 E-value=0.0025 Score=61.67 Aligned_cols=70 Identities=23% Similarity=0.361 Sum_probs=46.6
Q ss_pred HcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 296 RAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 296 ~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
-.|...|-+-... |.+ ++..-+.++..++..++|+|+.|||+|.+++.++. +.|||.|.+|..+..|+++
T Consensus 151 ~~g~~~iYLEaGS----Ga~-~~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~-~aGAD~IVvGn~iee~~~~ 220 (230)
T PF01884_consen 151 YLGMPIIYLEAGS----GAY-GPVPEEVIAAVKKLSDIPLIVGGGIRSPEQAREMA-EAGADTIVVGNAIEEDPDL 220 (230)
T ss_dssp HTT-SEEEEE--T----TSS-S-HHHHHHHHHHHSSSSEEEEESS--SHHHHHHHH-CTTSSEEEESCHHHHHH-H
T ss_pred HhCCCEEEEEeCC----CCC-CCccHHHHHHHHhcCCccEEEeCCcCCHHHHHHHH-HCCCCEEEECCEEEEcchH
Confidence 3678877773211 112 22222344444555699999999999999999999 8999999999999999873
No 275
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=96.45 E-value=0.025 Score=58.35 Aligned_cols=97 Identities=20% Similarity=0.332 Sum_probs=65.2
Q ss_pred ChHHHHHHHHHHhhhc---------cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCC--CHHH
Q psy7343 255 DWPLLTNLVSSLRQAV---------QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA--SWEH 323 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~---------~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~--~~~~ 323 (487)
.++.-.+.++.+++.. ...|.+-+ + ..++..+.++.|.++|+|.|.|..-. |.. -.+.
T Consensus 71 ~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aav--g-~~~~~~er~~~L~~agvD~ivID~a~--------g~s~~~~~~ 139 (352)
T PF00478_consen 71 SIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAV--G-TRDDDFERAEALVEAGVDVIVIDSAH--------GHSEHVIDM 139 (352)
T ss_dssp CHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEE--E-SSTCHHHHHHHHHHTT-SEEEEE-SS--------TTSHHHHHH
T ss_pred CHHHHHHHHhhhccccccccccccccceEEEEe--c-CCHHHHHHHHHHHHcCCCEEEccccC--------ccHHHHHHH
Confidence 3555566666666532 23344444 2 22345777888888999999994221 112 2378
Q ss_pred HHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 324 ITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 324 i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
++++++.. ++|||+ |+|-|.+.++.++ +.|||+|-+|=|
T Consensus 140 ik~ik~~~~~~~via-GNV~T~e~a~~L~-~aGad~vkVGiG 179 (352)
T PF00478_consen 140 IKKIKKKFPDVPVIA-GNVVTYEGAKDLI-DAGADAVKVGIG 179 (352)
T ss_dssp HHHHHHHSTTSEEEE-EEE-SHHHHHHHH-HTT-SEEEESSS
T ss_pred HHHHHHhCCCceEEe-cccCCHHHHHHHH-HcCCCEEEEecc
Confidence 89999888 499997 8999999999999 799999998854
No 276
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=96.44 E-value=0.021 Score=56.19 Aligned_cols=173 Identities=20% Similarity=0.307 Sum_probs=81.7
Q ss_pred eccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHH-HHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccC-
Q psy7343 178 TPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSK-NLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQD- 254 (487)
Q Consensus 178 t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~-~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~- 254 (487)
-|+.++..+..+ ...+++.... +.||..=+.+.||- ++....+.+++. |.+|. |. |..-...|.++..|..
T Consensus 59 lpygnaN~iv~e--m~~eiLp~v~-~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~-Nf--PTvgliDG~fR~~LEe~ 132 (268)
T PF09370_consen 59 LPYGNANEIVME--MAREILPVVK-DTPVIAGVCATDPFRDMDRFLDELKELGFSGVQ-NF--PTVGLIDGQFRQNLEET 132 (268)
T ss_dssp BTEEEHHHHHHH--HHHHHGGG-S-SS-EEEEE-TT-TT--HHHHHHHHHHHT-SEEE-E---S-GGG--HHHHHHHHHT
T ss_pred hcccCHhHHHHH--HHHhhhhhcc-CCCEEEEecCcCCCCcHHHHHHHHHHhCCceEE-EC--CcceeeccHHHHHHHhc
Confidence 344455544433 2355554333 58999999988873 455566666665 66552 22 4332334444444421
Q ss_pred --ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEc-cccCCCCCCCCCCCH----HHHHHH
Q psy7343 255 --DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHG-RTVDQRGMNTGLASW----EHITAV 327 (487)
Q Consensus 255 --d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~Vhg-Rt~~~~g~~~g~~~~----~~i~~i 327 (487)
-.+.=.++++..++. ++.-+.- ..+. +-++.+.++|+|.|.+|- .|....-+....... +.+.++
T Consensus 133 Gmgy~~EVemi~~A~~~-gl~T~~y------vf~~-e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i 204 (268)
T PF09370_consen 133 GMGYDREVEMIRKAHEK-GLFTTAY------VFNE-EQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEI 204 (268)
T ss_dssp T--HHHHHHHHHHHHHT-T-EE--E------E-SH-HHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC-CCeeeee------ecCH-HHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHH
Confidence 133334444444432 3221111 1233 445556689999999984 443322111111122 334444
Q ss_pred Hhh---C--C-CcEEEcCCCCCHHHHHHHHHhcC-CcEEEeccc
Q psy7343 328 RKA---L--T-IPVIANGNIQCLADVEACLAQTG-VAGVMTAEG 364 (487)
Q Consensus 328 ~~~---~--~-iPVi~nGgI~s~~da~~~l~~~G-ad~VmiGRa 364 (487)
.+. + + |-++..|-|.+++|++.+++.+. ++|..-|..
T Consensus 205 ~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss 248 (268)
T PF09370_consen 205 FDAARAVNPDIIVLCHGGPIATPEDAQYVLRNTKGIHGFIGASS 248 (268)
T ss_dssp HHHHHCC-TT-EEEEECTTB-SHHHHHHHHHH-TTEEEEEESTT
T ss_pred HHHHHHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCCCEEecccc
Confidence 332 2 2 44567899999999999998875 999887764
No 277
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=96.42 E-value=0.0091 Score=63.48 Aligned_cols=108 Identities=19% Similarity=0.270 Sum_probs=71.6
Q ss_pred ChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHH-HHHcCCcEEEEEccccCCC--C----CCCCCCCHHHHHH
Q psy7343 255 DWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARM-LERAGCQLLAVHGRTVDQR--G----MNTGLASWEHITA 326 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~-le~~G~d~I~VhgRt~~~~--g----~~~g~~~~~~i~~ 326 (487)
.++.+.+++..+|+.. .-+|++|+- .....+.... ..++++|.|+|.|-..... + .+.|.+..-.+.+
T Consensus 286 sieDLaqlI~dLk~~~~~~~I~VKlv----a~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae 361 (485)
T COG0069 286 SIEDLAQLIKDLKEANPWAKISVKLV----AEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAE 361 (485)
T ss_pred CHHHHHHHHHHHHhcCCCCeEEEEEe----cccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHH
Confidence 4678888888898875 356999983 2233333333 7789999999966321100 0 0122221122333
Q ss_pred HHhh-----C--CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 327 VRKA-----L--TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 327 i~~~-----~--~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
+.+. + ++-|++.|++.|..|+...+ ..|||.|-+|++.|-
T Consensus 362 ~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~-aLGAd~v~~gTa~li 408 (485)
T COG0069 362 THQTLVLNGLRDKVKLIADGGLRTGADVAKAA-ALGADAVGFGTAALV 408 (485)
T ss_pred HHHHHHHcCCcceeEEEecCCccCHHHHHHHH-HhCcchhhhchHHHH
Confidence 3222 1 57789999999999999999 799999999998764
No 278
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=96.42 E-value=0.071 Score=53.73 Aligned_cols=149 Identities=17% Similarity=0.190 Sum_probs=95.1
Q ss_pred CCCCCeeeeec-c-CCHHHHHHHHHhhCCc-CcEEEeecCC-CcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEE
Q psy7343 201 PEDRPLIIQFC-G-NDSKNLTEAAKLAEPH-CDGIDINIGC-PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVS 275 (487)
Q Consensus 201 ~~~~Pv~Vqi~-g-~d~~~~~~aa~~~~~~-~d~IdiN~Gc-P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~ 275 (487)
..+.||++-+- | .++.+..+.++.++++ +.+|.|-=.. |. +.|..++..+.+.+...+-+++++++. +.++.
T Consensus 76 ~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK---~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~ 152 (292)
T PRK11320 76 ACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAK---RCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFV 152 (292)
T ss_pred ccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCcc---ccCCCCCCcccCHHHHHHHHHHHHHhccCCCeE
Confidence 34689999986 3 3888888888888776 6777764222 21 122222222234554444455555443 67788
Q ss_pred EEeecc----cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEc---CCCCCHHHHH
Q psy7343 276 CKIRIY----QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN---GNIQCLADVE 348 (487)
Q Consensus 276 vKiR~~----~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~n---GgI~s~~da~ 348 (487)
++-|.. .+.++.++-++...++|+|.|.++|- .+.+.++++.+.++.|+.+| |+-.-.-+..
T Consensus 153 IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~-----------~~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~ 221 (292)
T PRK11320 153 IMARTDALAVEGLDAAIERAQAYVEAGADMIFPEAM-----------TELEMYRRFADAVKVPILANITEFGATPLFTTE 221 (292)
T ss_pred EEEecCcccccCHHHHHHHHHHHHHcCCCEEEecCC-----------CCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHH
Confidence 888863 23456667778888999999999642 34678889998899998543 3321112344
Q ss_pred HHHHhcCCcEEEeccc
Q psy7343 349 ACLAQTGVAGVMTAEG 364 (487)
Q Consensus 349 ~~l~~~Gad~VmiGRa 364 (487)
++- +.|+..|..|-.
T Consensus 222 ~L~-~lGv~~v~~~~~ 236 (292)
T PRK11320 222 ELA-SAGVAMVLYPLS 236 (292)
T ss_pred HHH-HcCCcEEEEChH
Confidence 444 679999998854
No 279
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=96.40 E-value=0.11 Score=47.67 Aligned_cols=194 Identities=17% Similarity=0.098 Sum_probs=95.6
Q ss_pred eEEecCCCCC---CHHHHHHHHHcCCCeEEccceeccccccCcHH--HHHHhhhCCCCCceeeeeccccCCCCCcccccc
Q psy7343 81 FILAPMVDAS---ELPWRLLSRRYGSHLCYTPMVSAHQFIADKKL--RQEILMSTPEDRPLIIQRTIFPRLGSPRFILAP 155 (487)
Q Consensus 81 ~~LAPMag~t---d~pFR~l~~~~Gadl~~TEMi~a~~l~~~~~~--~~~~~~~~~~e~p~~vQl~~~~~~g~~~~~lAp 155 (487)
+.+++|++-. ...+.+.+.+.|++++.++.......-..... ...... ...+.|+++|+... +......
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~- 74 (200)
T cd04722 1 VILALLAGGPSGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVA-AETDLPLGVQLAIN----DAAAAVD- 74 (200)
T ss_pred CeeeccccCchHHHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHH-hhcCCcEEEEEccC----Cchhhhh-
Confidence 3578888874 44555667777999988887665544322211 122222 23467899996432 1100000
Q ss_pred ccCCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEe
Q psy7343 156 MVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDI 234 (487)
Q Consensus 156 ma~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~Idi 234 (487)
.....+...|++...-........-...+...++.+.. .+.|+++++...+... .. . +.+. .|.|.+
T Consensus 75 -------~~a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~-~~~~v~~~~~~~~~~~--~~-~-~~~~g~d~i~~ 142 (200)
T cd04722 75 -------IAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAV-PDVKVVVKLSPTGELA--AA-A-AEEAGVDEVGL 142 (200)
T ss_pred -------HHHHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhc-CCceEEEEECCCCccc--hh-h-HHHcCCCEEEE
Confidence 00234566676553211111000000011122222222 3678999987433211 11 1 2333 677777
Q ss_pred ecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcc
Q psy7343 235 NIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 235 N~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgR 307 (487)
+.+-+... + . ..++. ....+..+++..++||++.+ .+.+..++.+.++. |+|+|++ ||
T Consensus 143 ~~~~~~~~---~--~---~~~~~-~~~~~~~~~~~~~~pi~~~G----Gi~~~~~~~~~~~~-Gad~v~v-gs 200 (200)
T cd04722 143 GNGGGGGG---G--R---DAVPI-ADLLLILAKRGSKVPVIAGG----GINDPEDAAEALAL-GADGVIV-GS 200 (200)
T ss_pred cCCcCCCC---C--c---cCchh-HHHHHHHHHhcCCCCEEEEC----CCCCHHHHHHHHHh-CCCEEEe-cC
Confidence 64432110 0 0 11111 12233345556789999987 55555666666664 9999998 64
No 280
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.40 E-value=0.015 Score=66.42 Aligned_cols=98 Identities=16% Similarity=0.275 Sum_probs=69.0
Q ss_pred cCCCCCCeeeeecc-------CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc
Q psy7343 199 STPEDRPLIIQFCG-------NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV 270 (487)
Q Consensus 199 ~~~~~~Pv~Vqi~g-------~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~ 270 (487)
..+.+.||+++|.. .+.++..++++.+++. .|.|+++.|..... .+..++. .....+.+.+|+.+
T Consensus 614 ~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~-~~~~~~~------~~~~~~~~~ik~~~ 686 (765)
T PRK08255 614 VWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKD-EKPVYGR------MYQTPFADRIRNEA 686 (765)
T ss_pred hcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcC-CCCCcCc------cccHHHHHHHHHHc
Confidence 34557899999872 3567888999998877 89999987752111 1111111 11123445677788
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
++||++++ ++.+..++.+.+++.++|.|++ ||.
T Consensus 687 ~~pv~~~G----~i~~~~~a~~~l~~g~~D~v~~-gR~ 719 (765)
T PRK08255 687 GIATIAVG----AISEADHVNSIIAAGRADLCAL-ARP 719 (765)
T ss_pred CCEEEEeC----CCCCHHHHHHHHHcCCcceeeE-cHH
Confidence 99999998 6667888888888888999999 885
No 281
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=96.39 E-value=0.091 Score=53.00 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=91.7
Q ss_pred CCCCCeeeeec-c-CCHHHHHHHHHhhCCc-CcEEEeecCC-CcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEE
Q psy7343 201 PEDRPLIIQFC-G-NDSKNLTEAAKLAEPH-CDGIDINIGC-PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVS 275 (487)
Q Consensus 201 ~~~~Pv~Vqi~-g-~d~~~~~~aa~~~~~~-~d~IdiN~Gc-P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~ 275 (487)
..+.||++-+- | .++.+..+.++.++++ ..+|.|.=.. | .+.|..++..+-+.+...+-+++++++. +.++.
T Consensus 75 ~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~p---K~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~ 151 (294)
T TIGR02319 75 AVDVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNP---KRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFT 151 (294)
T ss_pred ccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCc---cccCCCCCccccCHHHHHHHHHHHHHhccCCCeE
Confidence 45789999986 3 2444466777777776 7777775332 2 1222222222224444444444455433 45688
Q ss_pred EEeecc----cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEE---EcCCCCCHHHHH
Q psy7343 276 CKIRIY----QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI---ANGNIQCLADVE 348 (487)
Q Consensus 276 vKiR~~----~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi---~nGgI~s~~da~ 348 (487)
++.|.. .+.++.++-++...++|+|.|.++| ..+.+.++++.+.++.|+. ..|+-.-.-.+.
T Consensus 152 I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~-----------~~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~ 220 (294)
T TIGR02319 152 IIARTDARESFGLDEAIRRSREYVAAGADCIFLEA-----------MLDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTK 220 (294)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHhCCCEEEecC-----------CCCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHH
Confidence 888863 2345667777888899999999954 2345778899988888873 334322222455
Q ss_pred HHHHhcCCcEEEeccc
Q psy7343 349 ACLAQTGVAGVMTAEG 364 (487)
Q Consensus 349 ~~l~~~Gad~VmiGRa 364 (487)
++- +.|++.|..+-.
T Consensus 221 eL~-~lG~~~v~~~~~ 235 (294)
T TIGR02319 221 ELE-SIGYNLAIYPLS 235 (294)
T ss_pred HHH-HcCCcEEEEcHH
Confidence 555 679999988853
No 282
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=96.38 E-value=0.024 Score=53.88 Aligned_cols=161 Identities=20% Similarity=0.291 Sum_probs=104.9
Q ss_pred cChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEe-ecCCCcceeeccCccccccCChHHHHHHHHHH
Q psy7343 188 ADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDI-NIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSL 266 (487)
Q Consensus 188 ~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~Idi-N~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v 266 (487)
.|++..+... ...+.|+-|. +-+|+.|..+.+ ...|.||| |..| . -.+|+ .-..+.+.++.++.
T Consensus 48 adp~LV~~~~--~~s~lPICVS--aVep~~f~~aV~---AGAdliEIGNfDs-F--Y~qGr-----~f~a~eVL~Lt~~t 112 (242)
T PF04481_consen 48 ADPELVKLAK--SLSNLPICVS--AVEPELFVAAVK---AGADLIEIGNFDS-F--YAQGR-----RFSAEEVLALTRET 112 (242)
T ss_pred CCHHHHHHHH--HhCCCCeEee--cCCHHHHHHHHH---hCCCEEEecchHH-H--HhcCC-----eecHHHHHHHHHHH
Confidence 4665554332 2335777765 347887776653 34677777 3333 1 12222 12456777888888
Q ss_pred hhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCC--CCCCCC-----CCHHHHHHHHhhCCCcEEEc
Q psy7343 267 RQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR--GMNTGL-----ASWEHITAVRKALTIPVIAN 338 (487)
Q Consensus 267 ~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~--g~~~g~-----~~~~~i~~i~~~~~iPVi~n 338 (487)
|+.+ ++++++.+.-.-..++-.+++..|++.|+|.|.--|.+.... ++..|. +.+.....+.+.+++||+..
T Consensus 113 R~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcA 192 (242)
T PF04481_consen 113 RSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCA 192 (242)
T ss_pred HHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEec
Confidence 8766 688888875444556788999999999999998766554321 111111 23455667778899999999
Q ss_pred CCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 339 GNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 339 GgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
.|+.+..--.. + ..||.||.||.+.
T Consensus 193 SGlS~vT~PmA-i-aaGAsGVGVGSav 217 (242)
T PF04481_consen 193 SGLSAVTAPMA-I-AAGASGVGVGSAV 217 (242)
T ss_pred cCcchhhHHHH-H-HcCCcccchhHHh
Confidence 99987664443 3 4899999999863
No 283
>PRK08227 autoinducer 2 aldolase; Validated
Probab=96.36 E-value=0.25 Score=49.06 Aligned_cols=96 Identities=16% Similarity=0.204 Sum_probs=64.2
Q ss_pred HHHHHHHHhhhccCcEEEEeecccccc----cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCc
Q psy7343 259 LTNLVSSLRQAVQVPVSCKIRIYQDVN----KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIP 334 (487)
Q Consensus 259 i~eiv~~v~~~~~iPV~vKiR~~~d~~----~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iP 334 (487)
+.+++++.. ..++|+.+=...+.++. ...-.++...+.|+|.|-+ .|++ +.++++.+...+|
T Consensus 129 l~~v~~ea~-~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~---------~y~~----~~f~~vv~a~~vP 194 (264)
T PRK08227 129 IIQLVDAGL-RYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKT---------YYVE----EGFERITAGCPVP 194 (264)
T ss_pred HHHHHHHHH-HhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEec---------CCCH----HHHHHHHHcCCCc
Confidence 444444332 45899988322233322 2445667788999999977 1443 6788888889999
Q ss_pred EEEcCCCCC-HHHHHHHHH---hcCCcEEEeccccccC
Q psy7343 335 VIANGNIQC-LADVEACLA---QTGVAGVMTAEGNLYN 368 (487)
Q Consensus 335 Vi~nGgI~s-~~da~~~l~---~~Gad~VmiGRa~l~~ 368 (487)
|+..||=.+ .+++.++.+ +.||.||.+||=....
T Consensus 195 VviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~ 232 (264)
T PRK08227 195 IVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQS 232 (264)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhcc
Confidence 998888774 444544432 3799999999965555
No 284
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=96.36 E-value=0.04 Score=53.94 Aligned_cols=144 Identities=22% Similarity=0.256 Sum_probs=91.6
Q ss_pred CCCCeeeeec---cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEE
Q psy7343 202 EDRPLIIQFC---GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSC 276 (487)
Q Consensus 202 ~~~Pv~Vqi~---g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~v 276 (487)
.+.||++-+. |+++.+..+.++.++++ ..+|+|.=. +++..+..+. +.+...+=+++++++. +..+.+
T Consensus 68 ~~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq------~~~~~~~~l~-~~ee~~~kI~Aa~~a~~~~~~~I 140 (238)
T PF13714_consen 68 VSIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQ------RCGHGGKQLV-SPEEMVAKIRAAVDARRDPDFVI 140 (238)
T ss_dssp SSSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESB------STTTSTT-B---HHHHHHHHHHHHHHHSSTTSEE
T ss_pred hcCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeecc------ccCCCCCcee-CHHHHHHHHHHHHHhccCCeEEE
Confidence 3689999986 45599999999988776 777777633 1122234444 4555444455555433 344667
Q ss_pred Eeeccc------ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHH
Q psy7343 277 KIRIYQ------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEAC 350 (487)
Q Consensus 277 KiR~~~------d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~ 350 (487)
+-|..- +.++..+-++...++|+|.|.++|- .+-+.++++.+.++.|+..+-+ ...-++.++
T Consensus 141 ~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~-----------~~~~~i~~~~~~~~~Pl~v~~~-~~~~~~~eL 208 (238)
T PF13714_consen 141 IARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGL-----------QSEEEIERIVKAVDGPLNVNPG-PGTLSAEEL 208 (238)
T ss_dssp EEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTS-----------SSHHHHHHHHHHHSSEEEEETT-SSSS-HHHH
T ss_pred EEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCC-----------CCHHHHHHHHHhcCCCEEEEcC-CCCCCHHHH
Confidence 666532 3356667777888999999999543 3455688888888999887653 222455666
Q ss_pred HHhcCCcEEEecccc
Q psy7343 351 LAQTGVAGVMTAEGN 365 (487)
Q Consensus 351 l~~~Gad~VmiGRa~ 365 (487)
. +.|+..|..|-.+
T Consensus 209 ~-~lGv~~v~~~~~~ 222 (238)
T PF13714_consen 209 A-ELGVKRVSYGNSL 222 (238)
T ss_dssp H-HTTESEEEETSHH
T ss_pred H-HCCCcEEEEcHHH
Confidence 5 6899999988543
No 285
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=96.35 E-value=0.021 Score=54.85 Aligned_cols=90 Identities=22% Similarity=0.254 Sum_probs=67.5
Q ss_pred cCcEEEEeec-cc------ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCC
Q psy7343 271 QVPVSCKIRI-YQ------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQC 343 (487)
Q Consensus 271 ~iPV~vKiR~-~~------d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s 343 (487)
+++|++-+.. .+ +..++.++++.+++.|+++|.+..-... +. ...+.++.+++.+++||+.-|+|.+
T Consensus 10 ~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~----~~--g~~~~~~~i~~~v~iPi~~~~~i~~ 83 (217)
T cd00331 10 GLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEPKY----FQ--GSLEDLRAVREAVSLPVLRKDFIID 83 (217)
T ss_pred CceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCccc----cC--CCHHHHHHHHHhcCCCEEECCeecC
Confidence 3677774432 11 2357999999999999999988432111 21 2457888888888999999899999
Q ss_pred HHHHHHHHHhcCCcEEEecccccc
Q psy7343 344 LADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 344 ~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
.++++.+. +.|||+|.++...+.
T Consensus 84 ~~~v~~~~-~~Gad~v~l~~~~~~ 106 (217)
T cd00331 84 PYQIYEAR-AAGADAVLLIVAALD 106 (217)
T ss_pred HHHHHHHH-HcCCCEEEEeeccCC
Confidence 98898888 799999999876554
No 286
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=96.34 E-value=0.14 Score=51.72 Aligned_cols=77 Identities=16% Similarity=0.234 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCC---CCCCHHHHHHHHhhC-CCcEEEcCC--CCCHHHHHHHHHhcCCcEE
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNT---GLASWEHITAVRKAL-TIPVIANGN--IQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~---g~~~~~~i~~i~~~~-~iPVi~nGg--I~s~~da~~~l~~~Gad~V 359 (487)
+.+++.+ +.++|+|.+.+.=.+.-. .|. ...+++.++++++.+ ++|+++-|| |. .+++.+++ +.|++.|
T Consensus 155 ~peea~~-f~~tgvD~LAv~iG~vHG--~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~-~e~~~~~i-~~Gi~Ki 229 (293)
T PRK07315 155 PIEDAKA-MVETGIDFLAAGIGNIHG--PYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGIP-DDQIQEAI-KLGVAKV 229 (293)
T ss_pred CHHHHHH-HHHcCCCEEeeccccccc--cCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCCC-HHHHHHHH-HcCCCEE
Confidence 4555444 448999999872111111 122 236789999999999 599999988 74 57889998 7999999
Q ss_pred Eecccccc
Q psy7343 360 MTAEGNLY 367 (487)
Q Consensus 360 miGRa~l~ 367 (487)
-+++.+..
T Consensus 230 Nv~T~i~~ 237 (293)
T PRK07315 230 NVNTECQI 237 (293)
T ss_pred EEccHHHH
Confidence 99998775
No 287
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=96.34 E-value=0.044 Score=55.81 Aligned_cols=125 Identities=14% Similarity=0.074 Sum_probs=81.0
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ ++||++.+-- .+..+..+.+
T Consensus 27 D~~~l~~lv~~li~~--------Gv-~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~-~~t~~ai~~a 96 (309)
T cd00952 27 DLDETARLVERLIAA--------GV-DGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATT-LNTRDTIART 96 (309)
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEecc-CCHHHHHHHH
Confidence 667777777766555 44 4455566667665445666667777666655 4899987621 2456788999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEE------cCCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIA------NGNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~------nGgI~s~~da~~~l 351 (487)
+.+++.|+|++++..-. ... .+.....++++.|.+.. ++||+. .|--.+++.+.++.
T Consensus 97 ~~A~~~Gad~vlv~~P~-y~~--~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~~l~~L~ 160 (309)
T cd00952 97 RALLDLGADGTMLGRPM-WLP--LDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELA 160 (309)
T ss_pred HHHHHhCCCEEEECCCc-CCC--CCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHHHHHHHh
Confidence 99999999999994321 000 11122357888888888 699873 24344566666665
No 288
>PRK08999 hypothetical protein; Provisional
Probab=96.33 E-value=0.021 Score=58.03 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=57.3
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCC--CCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQ--RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~--~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
+..+..+ +..+.+.|+|+|.+ |-.... ++. ..+..++.++++++..++||++-||| +.+++.+++ ++|+++|.
T Consensus 232 S~h~~~~-~~~a~~~~~dyi~~-gpvf~t~tk~~-~~~~g~~~~~~~~~~~~~Pv~AiGGI-~~~~~~~~~-~~g~~gva 306 (312)
T PRK08999 232 SCHDAEE-LARAQRLGVDFAVL-SPVQPTASHPG-AAPLGWEGFAALIAGVPLPVYALGGL-GPGDLEEAR-EHGAQGIA 306 (312)
T ss_pred ecCCHHH-HHHHHhcCCCEEEE-CCCcCCCCCCC-CCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHH-HhCCCEEE
Confidence 3345555 44566789999999 532211 111 12335788999999999999999999 899999998 78999999
Q ss_pred ecccc
Q psy7343 361 TAEGN 365 (487)
Q Consensus 361 iGRa~ 365 (487)
+-+++
T Consensus 307 ~i~~~ 311 (312)
T PRK08999 307 GIRGL 311 (312)
T ss_pred EEEEe
Confidence 88765
No 289
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.32 E-value=0.025 Score=57.71 Aligned_cols=101 Identities=18% Similarity=0.191 Sum_probs=68.1
Q ss_pred CCCCCCeeeeecc-------CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc
Q psy7343 200 TPEDRPLIIQFCG-------NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271 (487)
Q Consensus 200 ~~~~~Pv~Vqi~g-------~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~ 271 (487)
...+.||++++.. .+.++..++++.+++. .|.|++..|......... ... ......-.+.++.+++.++
T Consensus 205 ~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~--~~~-~~~~~~~~~~~~~ir~~~~ 281 (327)
T cd02803 205 VGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPII--PPP-YVPEGYFLELAEKIKKAVK 281 (327)
T ss_pred cCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCccccccc--CCC-CCCcchhHHHHHHHHHHCC
Confidence 3456799999873 3567888889988877 899999877632111100 000 0011222345556777789
Q ss_pred CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 272 iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
+||++.+ ++.+..++.+.+++.|+|.|++ ||.
T Consensus 282 iPVi~~G----gi~t~~~a~~~l~~g~aD~V~i-gR~ 313 (327)
T cd02803 282 IPVIAVG----GIRDPEVAEEILAEGKADLVAL-GRA 313 (327)
T ss_pred CCEEEeC----CCCCHHHHHHHHHCCCCCeeee-cHH
Confidence 9999997 5667888888888779999999 884
No 290
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=96.32 E-value=0.044 Score=56.25 Aligned_cols=108 Identities=23% Similarity=0.227 Sum_probs=73.4
Q ss_pred cCChHHHHHHHHHHhhhcc-CcEEEEeecccc-cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCH----HHHHH
Q psy7343 253 QDDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQD-VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW----EHITA 326 (487)
Q Consensus 253 ~~d~~~i~eiv~~v~~~~~-iPV~vKiR~~~d-~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~----~~i~~ 326 (487)
..+++.. +-++.+++..+ .|+++|+-.... ..+..++.+..+..++|++.+|--.........+..++ +.++.
T Consensus 94 ~~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~ 172 (326)
T cd02811 94 LEDPELA-ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEE 172 (326)
T ss_pred ccChhhh-hHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHH
Confidence 3467765 44556676664 999999844211 12567778888888999999974221111112233345 67888
Q ss_pred HHhhCCCcEEE--cCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 327 VRKALTIPVIA--NGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 327 i~~~~~iPVi~--nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+++.+++||+. +|.-.+.++++.+. +.|+|+|.++
T Consensus 173 l~~~~~vPVivK~~g~g~s~~~a~~l~-~~Gvd~I~vs 209 (326)
T cd02811 173 LVKALSVPVIVKEVGFGISRETAKRLA-DAGVKAIDVA 209 (326)
T ss_pred HHHhcCCCEEEEecCCCCCHHHHHHHH-HcCCCEEEEC
Confidence 88889999997 56667888887776 7999999985
No 291
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.31 E-value=0.045 Score=54.76 Aligned_cols=93 Identities=22% Similarity=0.207 Sum_probs=61.8
Q ss_pred HHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC--CcEE
Q psy7343 259 LTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT--IPVI 336 (487)
Q Consensus 259 i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~--iPVi 336 (487)
+.+-++.+|+..+-...+-+ +..+.++ ++...+.|+|+|++ . ....+.++++++..+ +|+.
T Consensus 174 ~~~~v~~aR~~~~~~~~Igv----sv~tlee-a~~A~~~gaDyI~l-D-----------~~~~e~l~~~~~~~~~~i~i~ 236 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEV----ETETEEQ-VREAVAAGADIIMF-D-----------NRTPDEIREFVKLVPSAIVTE 236 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEE----EeCCHHH-HHHHHHcCCCEEEE-C-----------CCCHHHHHHHHHhcCCCceEE
Confidence 44555556666542222222 3445555 44456799999998 1 123467777777664 7778
Q ss_pred EcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 337 ~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
+.||| +.+.+.++. ++|+|++.+|.-...-|+
T Consensus 237 AiGGI-t~~ni~~~a-~~Gvd~IAvg~l~~sa~~ 268 (277)
T PRK08072 237 ASGGI-TLENLPAYG-GTGVDYISLGFLTHSVKA 268 (277)
T ss_pred EECCC-CHHHHHHHH-HcCCCEEEEChhhcCCcc
Confidence 99999 689999999 799999999975543343
No 292
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=96.28 E-value=0.062 Score=55.71 Aligned_cols=97 Identities=22% Similarity=0.171 Sum_probs=72.3
Q ss_pred ChHHHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC
Q psy7343 255 DWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT 332 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~ 332 (487)
+++.-.+.++++++.++ +.+.+-.--+|+..+..++++.+++.+++.|-= + ....+++..+++++.++
T Consensus 168 ~~~~d~~~v~air~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iEe--------P--~~~~d~~~~~~l~~~~~ 237 (355)
T cd03321 168 TADEDLAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGLTWIEE--------P--TLQHDYEGHARIASALR 237 (355)
T ss_pred ChHhHHHHHHHHHHhhCCCCEEEEeCCCCcCHHHHHHHHHHHHcCCCCEEEC--------C--CCCcCHHHHHHHHHhcC
Confidence 34444566777887763 445543333567778889999999999887752 1 12347889999999999
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
+||.+...+.+..++.++++..++|.+++
T Consensus 238 ipia~~E~~~~~~~~~~~i~~~~~d~i~~ 266 (355)
T cd03321 238 TPVQMGENWLGPEEMFKALSAGACDLVMP 266 (355)
T ss_pred CCEEEcCCCcCHHHHHHHHHhCCCCeEec
Confidence 99999888999999999997677887764
No 293
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=96.27 E-value=0.037 Score=51.82 Aligned_cols=90 Identities=22% Similarity=0.312 Sum_probs=57.6
Q ss_pred HHHHhhhccCcEEEEeecc-cc----cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE
Q psy7343 263 VSSLRQAVQVPVSCKIRIY-QD----VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA 337 (487)
Q Consensus 263 v~~v~~~~~iPV~vKiR~~-~d----~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~ 337 (487)
++++++.+++||+.=+.-. .| +.-+.+-++.+.++|+|.|.+.+ |...++ ....++++++++.. .++++
T Consensus 24 I~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDa-T~R~Rp----~~l~~li~~i~~~~-~l~MA 97 (192)
T PF04131_consen 24 IRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDA-TDRPRP----ETLEELIREIKEKY-QLVMA 97 (192)
T ss_dssp HHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE--SSSS-S----S-HHHHHHHHHHCT-SEEEE
T ss_pred HHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEec-CCCCCC----cCHHHHHHHHHHhC-cEEee
Confidence 3457888999999844321 11 22356777888899999999954 333332 34568899999987 65655
Q ss_pred cCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 338 NGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 338 nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
||.|.+++.... +.|+|.|.-
T Consensus 98 --Dist~ee~~~A~-~~G~D~I~T 118 (192)
T PF04131_consen 98 --DISTLEEAINAA-ELGFDIIGT 118 (192)
T ss_dssp --E-SSHHHHHHHH-HTT-SEEE-
T ss_pred --ecCCHHHHHHHH-HcCCCEEEc
Confidence 999999999998 789998753
No 294
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=96.23 E-value=0.06 Score=54.40 Aligned_cols=125 Identities=17% Similarity=0.190 Sum_probs=82.2
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ ++||++.+- .+..+..+.+
T Consensus 24 D~~~l~~li~~l~~~--------Gv-~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~--~~t~~ai~~a 92 (296)
T TIGR03249 24 DEAAYRENIEWLLGY--------GL-EALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVG--GNTSDAIEIA 92 (296)
T ss_pred CHHHHHHHHHHHHhc--------CC-CEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--ccHHHHHHHH
Confidence 667777777766555 44 4455566667665445666666776666554 488998873 3566888999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEE-Ec--CCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI-AN--GNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi-~n--GgI~s~~da~~~l~ 352 (487)
+.+++.|+|++++..-.. .. .+.....++++++.+.+++||+ +| |--.+++.+.++.+
T Consensus 93 ~~a~~~Gadav~~~pP~y-~~--~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La~ 153 (296)
T TIGR03249 93 RLAEKAGADGYLLLPPYL-IN--GEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLAD 153 (296)
T ss_pred HHHHHhCCCEEEECCCCC-CC--CCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 999999999999943210 00 1111234778888888899975 44 33446777777764
No 295
>PLN02979 glycolate oxidase
Probab=96.22 E-value=0.044 Score=56.61 Aligned_cols=46 Identities=17% Similarity=0.440 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 317 g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+..+|+.++.+++..++|||. .||.+.+|++++. +.|+|+|.++-.
T Consensus 208 ~~ltW~dl~wlr~~~~~Pviv-KgV~~~~dA~~a~-~~Gvd~I~Vsnh 253 (366)
T PLN02979 208 RTLSWKDVQWLQTITKLPILV-KGVLTGEDARIAI-QAGAAGIIVSNH 253 (366)
T ss_pred CCCCHHHHHHHHhccCCCEEe-ecCCCHHHHHHHH-hcCCCEEEECCC
Confidence 345799999999999999998 6788999999999 799999988643
No 296
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=96.16 E-value=0.14 Score=50.82 Aligned_cols=117 Identities=16% Similarity=0.195 Sum_probs=77.0
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCC-CCCCCCCCHHHHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR-GMNTGLASWEHITAV 327 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~-g~~~g~~~~~~i~~i 327 (487)
|+....+.+++..+ . .++.||++|--...+.++...+++.+.+.|.+-|++-=|+.... +......|+..+..+
T Consensus 115 ~s~~~~n~~LL~~~----a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~l 189 (260)
T TIGR01361 115 GARNMQNFELLKEV----G-KQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVL 189 (260)
T ss_pred CcccccCHHHHHHH----h-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHH
Confidence 44445677766553 2 35899999975555677889999999999997676633422221 112334688999999
Q ss_pred HhhCCCcEEEcCCC-CC-----HHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 328 RKALTIPVIANGNI-QC-----LADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 328 ~~~~~iPVi~nGgI-~s-----~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
++..+.||+++-+- .. ...+.... ..||||++|=+-+--|-.+
T Consensus 190 k~~~~~pV~~ds~Hs~G~r~~~~~~~~aAv-a~Ga~gl~iE~H~t~d~a~ 238 (260)
T TIGR01361 190 KKETHLPIIVDPSHAAGRRDLVIPLAKAAI-AAGADGLMIEVHPDPEKAL 238 (260)
T ss_pred HHhhCCCEEEcCCCCCCccchHHHHHHHHH-HcCCCEEEEEeCCCccccC
Confidence 98889999993222 22 23334445 6899999988755444444
No 297
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=96.16 E-value=0.063 Score=54.49 Aligned_cols=124 Identities=19% Similarity=0.229 Sum_probs=80.4
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|.+..-..+.-.++++.+.+.+ ++||++.+- .+..+..+.+
T Consensus 26 D~~~l~~li~~l~~~--------Gv-~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~--~~t~~~i~~~ 94 (303)
T PRK03620 26 DEAAYREHLEWLAPY--------GA-AALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG--GGTAQAIEYA 94 (303)
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC--CCHHHHHHHH
Confidence 666777777766555 44 4455556567655445566666777666655 589998773 3667889999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEE-Ec--CCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI-AN--GNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi-~n--GgI~s~~da~~~l 351 (487)
+.+++.|+|++++..-.. .. .+...-.++++.+.+.+++||+ +| |--.+++.+.++.
T Consensus 95 ~~a~~~Gadav~~~pP~y-~~--~~~~~i~~~f~~va~~~~lpi~lYn~~g~~l~~~~l~~L~ 154 (303)
T PRK03620 95 QAAERAGADGILLLPPYL-TE--APQEGLAAHVEAVCKSTDLGVIVYNRDNAVLTADTLARLA 154 (303)
T ss_pred HHHHHhCCCEEEECCCCC-CC--CCHHHHHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 999999999999933210 00 1111234778888888899976 43 3233666666665
No 298
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=96.13 E-value=0.049 Score=54.56 Aligned_cols=126 Identities=18% Similarity=0.187 Sum_probs=80.6
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ ++||++-+.- .+..+..+.+
T Consensus 19 D~~~~~~~i~~l~~~--------Gv-~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~~~~a 88 (284)
T cd00950 19 DFDALERLIEFQIEN--------GT-DGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS-NNTAEAIELT 88 (284)
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC-ccHHHHHHHH
Confidence 667777777766555 33 3344445456554334555666666666655 4788876521 1456788999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE------cCCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA------NGNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~------nGgI~s~~da~~~l~ 352 (487)
+.+++.|+|+|++..-.. .. .+...-.++++++.+..++||+. .|-..|.+.+.++.+
T Consensus 89 ~~a~~~G~d~v~~~~P~~-~~--~~~~~l~~~~~~ia~~~~~pi~lYn~P~~~g~~ls~~~~~~L~~ 152 (284)
T cd00950 89 KRAEKAGADAALVVTPYY-NK--PSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLAE 152 (284)
T ss_pred HHHHHcCCCEEEEccccc-CC--CCHHHHHHHHHHHHhcCCCCEEEEEChhHhCCCCCHHHHHHHhc
Confidence 999999999999943211 00 11122347788888888999873 466677888888774
No 299
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=96.12 E-value=0.11 Score=54.16 Aligned_cols=124 Identities=12% Similarity=0.052 Sum_probs=85.7
Q ss_pred CHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHH
Q psy7343 214 DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 214 d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~ 290 (487)
+++++.+.++.+.+ .|+.|.|..|- + .+++.-.+.++++++.+ ++++.+-..-+++.++..++
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik~~~----------~----~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~ 208 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLHPWG----------P----GVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRL 208 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC----------c----hhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHH
Confidence 67777776665544 46666553211 1 11445566777888877 35565544335677788899
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCC-HHHHHHHHHhcCCcEEEe
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQC-LADVEACLAQTGVAGVMT 361 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s-~~da~~~l~~~Gad~Vmi 361 (487)
++.+++.++.++.= + . ...+++..+++++.+++||.+...+.+ .+++.++++...+|.|++
T Consensus 209 ~~~l~~~~l~~iEe--------P-~-~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~ 270 (368)
T cd03329 209 GRALEELGFFWYED--------P-L-REASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRA 270 (368)
T ss_pred HHHhhhcCCCeEeC--------C-C-CchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEec
Confidence 99999988776631 1 1 223678888999999999998888998 999999997767788765
No 300
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.11 E-value=0.39 Score=47.92 Aligned_cols=147 Identities=21% Similarity=0.265 Sum_probs=92.6
Q ss_pred CCCCCCeeeeec-c-CCHHHHHHHHHhhCCc-CcEEEeecC-CCcceeeccC-ccccccCChHHHHHHHHHHhhhc-cCc
Q psy7343 200 TPEDRPLIIQFC-G-NDSKNLTEAAKLAEPH-CDGIDINIG-CPQMVAKRGH-YGAYLQDDWPLLTNLVSSLRQAV-QVP 273 (487)
Q Consensus 200 ~~~~~Pv~Vqi~-g-~d~~~~~~aa~~~~~~-~d~IdiN~G-cP~~i~~~gr-~G~~l~~d~~~i~eiv~~v~~~~-~iP 273 (487)
...+.||+|-+- | .++.+..+.++.++++ ..+|.|-=- .|. +.|+ -|..+ -+.+...+-+++++++. +.+
T Consensus 75 ~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk---~cgh~~gk~l-~~~~e~v~rIkAa~~a~~~~~ 150 (289)
T COG2513 75 DAVDLPVLVDIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPK---RCGHLPGKEL-VSIDEMVDRIKAAVEARRDPD 150 (289)
T ss_pred hhcCCceEEeccCCCCcHHHHHHHHHHHHHcCcceeeeeecccch---hcCCCCCCCc-CCHHHHHHHHHHHHHhccCCC
Confidence 456899999986 2 2488888888877776 555554310 011 1121 12333 34555555555555554 567
Q ss_pred EEEEeecc----cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEc---CCCCCHHH
Q psy7343 274 VSCKIRIY----QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN---GNIQCLAD 346 (487)
Q Consensus 274 V~vKiR~~----~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~n---GgI~s~~d 346 (487)
+++.-|.. ...++.++-++...++|+|+|-.++. .+.+.++++.+.+++|+.+| ++-+-.-+
T Consensus 151 fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~al-----------~~~e~i~~f~~av~~pl~~N~t~~g~tp~~~ 219 (289)
T COG2513 151 FVIIARTDALLVEGLDDAIERAQAYVEAGADAIFPEAL-----------TDLEEIRAFAEAVPVPLPANITEFGKTPLLT 219 (289)
T ss_pred eEEEeehHHHHhccHHHHHHHHHHHHHcCCcEEccccC-----------CCHHHHHHHHHhcCCCeeeEeeccCCCCCcC
Confidence 88877762 23467778888899999999988554 24678999999999777665 22221223
Q ss_pred HHHHHHhcCCcEEEec
Q psy7343 347 VEACLAQTGVAGVMTA 362 (487)
Q Consensus 347 a~~~l~~~Gad~VmiG 362 (487)
+.++- +.|++.|..|
T Consensus 220 ~~~L~-~~Gv~~V~~~ 234 (289)
T COG2513 220 VAELA-ELGVKRVSYG 234 (289)
T ss_pred HHHHH-hcCceEEEEC
Confidence 33333 7899999877
No 301
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=96.08 E-value=0.078 Score=52.09 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=91.8
Q ss_pred CCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec
Q psy7343 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI 280 (487)
Q Consensus 201 ~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~ 280 (487)
....||-.|=|--|+-+..++...=.++ .-... +. -+.+.+.++++... ..+.-+.+-+
T Consensus 105 ~v~~PvL~KDFiiD~yQI~~Ar~~GADa-----------vLLI~-----~~--L~~~~l~el~~~A~-~LGm~~LVEV-- 163 (254)
T COG0134 105 AVDLPVLRKDFIIDPYQIYEARAAGADA-----------VLLIV-----AA--LDDEQLEELVDRAH-ELGMEVLVEV-- 163 (254)
T ss_pred hcCCCeeeccCCCCHHHHHHHHHcCccc-----------HHHHH-----Hh--cCHHHHHHHHHHHH-HcCCeeEEEE--
Confidence 4467888886655666555443221111 11111 11 13455677666544 4577777754
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcE
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAG 358 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~ 358 (487)
.+..++.+.+. .|++-|=|-.|.-.. -..+.+...++...+ +.-+|.-+||.|++|+.++. ..|+|+
T Consensus 164 ----h~~eEl~rAl~-~ga~iIGINnRdL~t-----f~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~-~~ga~a 232 (254)
T COG0134 164 ----HNEEELERALK-LGAKIIGINNRDLTT-----LEVDLETTEKLAPLIPKDVILISESGISTPEDVRRLA-KAGADA 232 (254)
T ss_pred ----CCHHHHHHHHh-CCCCEEEEeCCCcch-----heecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHH-HcCCCE
Confidence 34555555555 999999885563221 234667777777766 47788899999999999998 799999
Q ss_pred EEeccccccCccc
Q psy7343 359 VMTAEGNLYNPAL 371 (487)
Q Consensus 359 VmiGRa~l~~P~l 371 (487)
+.||.++|.++..
T Consensus 233 ~LVG~slM~~~~~ 245 (254)
T COG0134 233 FLVGEALMRADDP 245 (254)
T ss_pred EEecHHHhcCCCH
Confidence 9999999999876
No 302
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=96.07 E-value=0.072 Score=54.49 Aligned_cols=104 Identities=13% Similarity=0.192 Sum_probs=73.9
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh-----
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK----- 329 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~----- 329 (487)
+.+.+.++++.. +.++.-+.+-+ .+..|+-+.+...|++.|-|-.|.-.. -..|.+...++..
T Consensus 215 ~~~~L~~l~~~A-~~LGme~LVEV------H~~~ElerAl~~~ga~iIGINNRdL~T-----f~vDl~~t~~L~~~~~~~ 282 (338)
T PLN02460 215 PDLDIKYMLKIC-KSLGMAALIEV------HDEREMDRVLGIEGVELIGINNRSLET-----FEVDISNTKKLLEGERGE 282 (338)
T ss_pred CHHHHHHHHHHH-HHcCCeEEEEe------CCHHHHHHHHhcCCCCEEEEeCCCCCc-----ceECHHHHHHHhhhcccc
Confidence 355667766644 35677777765 244555555543499999997774322 2346676777766
Q ss_pred hC---CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 330 AL---TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 330 ~~---~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
.+ ++-+++-+||.|++|+..+. ..|+|+|.||.+++..|+.
T Consensus 283 ~i~~~~~~~VsESGI~t~~Dv~~l~-~~GadAvLVGEsLMr~~dp 326 (338)
T PLN02460 283 QIREKGIIVVGESGLFTPDDVAYVQ-NAGVKAVLVGESLVKQDDP 326 (338)
T ss_pred ccCCCCeEEEECCCCCCHHHHHHHH-HCCCCEEEECHHHhCCCCH
Confidence 22 34578889999999999998 7999999999999999875
No 303
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=96.05 E-value=0.034 Score=58.06 Aligned_cols=128 Identities=13% Similarity=0.089 Sum_probs=79.2
Q ss_pred hhhcChhHHHHHHh----cCCCCCCeeeeecc---------CCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCcccc
Q psy7343 185 QFIADKKLRQEILM----STPEDRPLIIQFCG---------NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAY 251 (487)
Q Consensus 185 ~Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~g---------~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~ 251 (487)
.+.+......++++ ....+.+|.++|.. .+.++..++++.+++..|.+++..|.........++
T Consensus 195 slenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~~D~i~vs~g~~~~~~~~~~~--- 271 (370)
T cd02929 195 SLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDELPDLWDVNVGDWANDGEDSRF--- 271 (370)
T ss_pred ChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHhhCCEEEecCCCcccccccccc---
Confidence 34444445555554 23345567766542 246777788888887789999988853211111111
Q ss_pred ccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh
Q psy7343 252 LQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA 330 (487)
Q Consensus 252 l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~ 330 (487)
. ......++.+.+++.+++||++.+ ++.+..+..+.+++.++|.|++ ||... ++-+++.++++.
T Consensus 272 ~--~~~~~~~~~~~ik~~~~~pvi~~G----~i~~~~~~~~~l~~g~~D~V~~-gR~~l--------adP~l~~k~~~g 335 (370)
T cd02929 272 Y--PEGHQEPYIKFVKQVTSKPVVGVG----RFTSPDKMVEVVKSGILDLIGA-ARPSI--------ADPFLPKKIREG 335 (370)
T ss_pred C--CccccHHHHHHHHHHCCCCEEEeC----CCCCHHHHHHHHHcCCCCeeee-chHhh--------hCchHHHHHHcC
Confidence 0 111123455667888899999997 5557777888888888999999 88422 233557777653
No 304
>PLN02535 glycolate oxidase
Probab=96.04 E-value=0.058 Score=56.04 Aligned_cols=44 Identities=23% Similarity=0.497 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 317 g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
...+|+.++.+++..+.||+. .||.+.+|++.+. +.|+|+|.+.
T Consensus 208 ~~~tW~~i~~lr~~~~~Pviv-KgV~~~~dA~~a~-~~GvD~I~vs 251 (364)
T PLN02535 208 ASLSWKDIEWLRSITNLPILI-KGVLTREDAIKAV-EVGVAGIIVS 251 (364)
T ss_pred CCCCHHHHHHHHhccCCCEEE-ecCCCHHHHHHHH-hcCCCEEEEe
Confidence 345799999999999999998 7899999999998 7999999875
No 305
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=96.04 E-value=0.061 Score=54.00 Aligned_cols=126 Identities=15% Similarity=0.204 Sum_probs=78.9
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ ++||++-+-- .+..+..+.+
T Consensus 17 D~~~~~~~i~~l~~~--------Gv-~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~s~~~~i~~a 86 (285)
T TIGR00674 17 DFAALEKLIDFQIEN--------GT-DAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGS-NATEEAISLT 86 (285)
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCC-ccHHHHHHHH
Confidence 666777777665554 44 4444555566654334555555666555544 4788876511 1445788899
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE------cCCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA------NGNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~------nGgI~s~~da~~~l~ 352 (487)
+.+++.|+|+|++..-... . .+...-.++++.+.+.+++||+. .|--.+++.++++.+
T Consensus 87 ~~a~~~Gad~v~v~pP~y~-~--~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L~~ 150 (285)
T TIGR00674 87 KFAEDVGADGFLVVTPYYN-K--PTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRLAE 150 (285)
T ss_pred HHHHHcCCCEEEEcCCcCC-C--CCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHHHc
Confidence 9999999999999432110 0 11112347788888888999873 465667887877763
No 306
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=96.02 E-value=0.049 Score=51.97 Aligned_cols=144 Identities=19% Similarity=0.273 Sum_probs=84.3
Q ss_pred eeeeeccCCHHHHHHHHHhhCCc-CcEE--EeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc
Q psy7343 206 LIIQFCGNDSKNLTEAAKLAEPH-CDGI--DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ 282 (487)
Q Consensus 206 v~Vqi~g~d~~~~~~aa~~~~~~-~d~I--diN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~ 282 (487)
++..|...|..++.+..+.++++ .|.+ |+-=|+ +--.+.-.++ +++++++.+++|+-+-+
T Consensus 2 I~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~---------fvpn~~~g~~----~i~~i~~~~~~~~DvHL---- 64 (201)
T PF00834_consen 2 ISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGH---------FVPNLTFGPD----IIKAIRKITDLPLDVHL---- 64 (201)
T ss_dssp EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSS---------SSSSB-B-HH----HHHHHHTTSSSEEEEEE----
T ss_pred eehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccc---------cCCcccCCHH----HHHHHhhcCCCcEEEEe----
Confidence 45566666777777777777665 5543 333232 1100101233 44556777778888866
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccC-------------------------------------------CCCCCCCCC
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVD-------------------------------------------QRGMNTGLA 319 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~-------------------------------------------~~g~~~g~~ 319 (487)
=+.+..++.+.+.++|++.|++|-.+.. -.+++.|..
T Consensus 65 Mv~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~ 144 (201)
T PF00834_consen 65 MVENPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQK 144 (201)
T ss_dssp ESSSGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB-
T ss_pred eeccHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCccc
Confidence 3445667777788888888888764310 013344443
Q ss_pred ----CHHHHHHHHhh-----CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 320 ----SWEHITAVRKA-----LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 320 ----~~~~i~~i~~~-----~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
.++.++++++. .++.|..-|||+. +.+.++. +.|||.+.+|+++..+
T Consensus 145 f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~-~~~~~~~-~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 145 FIPEVLEKIRELRKLIPENGLDFEIEVDGGINE-ENIKQLV-EAGADIFVAGSAIFKA 200 (201)
T ss_dssp -HGGHHHHHHHHHHHHHHHTCGSEEEEESSEST-TTHHHHH-HHT--EEEESHHHHTS
T ss_pred ccHHHHHHHHHHHHHHHhcCCceEEEEECCCCH-HHHHHHH-HcCCCEEEECHHHhCC
Confidence 23555555543 3588999999975 5777887 7899999999987653
No 307
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=96.02 E-value=0.071 Score=55.81 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=69.2
Q ss_pred HHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEE-----EccccCCCCCCCCCCCHHHH----HHHHhhCC
Q psy7343 263 VSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV-----HGRTVDQRGMNTGLASWEHI----TAVRKALT 332 (487)
Q Consensus 263 v~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V-----hgRt~~~~g~~~g~~~~~~i----~~i~~~~~ 332 (487)
+..+++.. ++||++.+--+.+.+++.++++.++++|+|+|.+ |+-.-...+... ..+.+.+ +.+++.++
T Consensus 104 i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~-gq~~e~~~~i~~~Vk~~~~ 182 (385)
T PLN02495 104 FKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAV-GQDCDLLEEVCGWINAKAT 182 (385)
T ss_pred HHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhh-ccCHHHHHHHHHHHHHhhc
Confidence 44566565 6899999743346678999999999999999988 211000111000 1234444 55577778
Q ss_pred CcEEE--cCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 333 IPVIA--NGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 333 iPVi~--nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
+||++ +-++.+..++.+.+.+.|||+|.+---+.
T Consensus 183 iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 183 VPVWAKMTPNITDITQPARVALKSGCEGVAAINTIM 218 (385)
T ss_pred CceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccC
Confidence 99884 67788888888877789999998754443
No 308
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=96.02 E-value=0.34 Score=48.70 Aligned_cols=144 Identities=16% Similarity=0.249 Sum_probs=91.0
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-ec
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-RI 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R~ 280 (487)
..||.+.+. |.+.+...++ ++. |. ..+-..+. .-.+..|-+...++++..+ ..+++|-+-+ ++
T Consensus 77 ~vPV~lHLDHg~~~e~i~~a---i~~---------Gf-tSVM~DgS-~l~~eeNi~~T~~vve~Ah-~~gv~VEaElG~v 141 (286)
T PRK08610 77 TIPVAIHLDHGSSFEKCKEA---IDA---------GF-TSVMIDAS-HSPFEENVATTKKVVEYAH-EKGVSVEAELGTV 141 (286)
T ss_pred CCCEEEECCCCCCHHHHHHH---HHc---------CC-CEEEEeCC-CCCHHHHHHHHHHHHHHHH-HcCCEEEEEEecc
Confidence 369999987 5555444332 222 33 22333221 1123455666777776544 4477776643 22
Q ss_pred cc--c--------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC--CCHHHHHHHHhhCCCcEEEcCCCCCH-HHH
Q psy7343 281 YQ--D--------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL--ASWEHITAVRKALTIPVIANGNIQCL-ADV 347 (487)
Q Consensus 281 ~~--d--------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~--~~~~~i~~i~~~~~iPVi~nGgI~s~-~da 347 (487)
++ | ..++++..+.++++|+|.+.|.-.|..+. |.+. -+++.+++|++.+++|++.-||=..+ +++
T Consensus 142 gg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~--Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~ 219 (286)
T PRK08610 142 GGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGP--YKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDI 219 (286)
T ss_pred CCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccc--cCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHH
Confidence 21 1 24678888888999999998843333332 5443 47899999999999999988777666 567
Q ss_pred HHHHHhcCCcEEEeccc
Q psy7343 348 EACLAQTGVAGVMTAEG 364 (487)
Q Consensus 348 ~~~l~~~Gad~VmiGRa 364 (487)
.+++ ..|+.-|=+++.
T Consensus 220 ~~ai-~~GI~KiNi~T~ 235 (286)
T PRK08610 220 QKAI-PFGTAKINVNTE 235 (286)
T ss_pred HHHH-HCCCeEEEeccH
Confidence 7777 688887777753
No 309
>PRK08185 hypothetical protein; Provisional
Probab=96.01 E-value=0.28 Score=49.23 Aligned_cols=141 Identities=18% Similarity=0.300 Sum_probs=85.7
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccc--cCChHHHHHHHHHHhhhccCcEEEEee
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVSSLRQAVQVPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l--~~d~~~i~eiv~~v~~~~~iPV~vKiR 279 (487)
..||.+.+. |.+.+...++. +..|+- +...+ +.+ ..+-+...++++..+ ..+++|-+.+-
T Consensus 68 ~vPV~lHLDHg~~~e~i~~ai---~~Gf~S----------VM~D~---S~l~~eeNi~~t~~vv~~a~-~~gv~vE~ElG 130 (283)
T PRK08185 68 PVPFVIHLDHGATIEDVMRAI---RCGFTS----------VMIDG---SLLPYEENVALTKEVVELAH-KVGVSVEGELG 130 (283)
T ss_pred CCCEEEECCCCCCHHHHHHHH---HcCCCE----------EEEeC---CCCCHHHHHHHHHHHHHHHH-HcCCeEEEEEe
Confidence 468888887 55555444333 222222 22222 222 234445555554333 34666655432
Q ss_pred -ccc---c---------cccHHHHHHHHHHcCCcEEEE-----EccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCC
Q psy7343 280 -IYQ---D---------VNKTVEYARMLERAGCQLLAV-----HGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNI 341 (487)
Q Consensus 280 -~~~---d---------~~~~~e~a~~le~~G~d~I~V-----hgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI 341 (487)
++. + ..+..+..+..+++|+|.+.+ ||--... ....-+++.++++++.+++|++.-||+
T Consensus 131 ~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~---~kp~L~~e~l~~I~~~~~iPLVlHGgs 207 (283)
T PRK08185 131 TIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKD---KKPELQMDLLKEINERVDIPLVLHGGS 207 (283)
T ss_pred eccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCC---CCCCcCHHHHHHHHHhhCCCEEEECCC
Confidence 221 1 125677778888899999999 6542221 012246899999999999999999999
Q ss_pred CCHH-HHHHHHHhcCCcEEEeccc
Q psy7343 342 QCLA-DVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 342 ~s~~-da~~~l~~~Gad~VmiGRa 364 (487)
..++ ++++++ ..|+.-|=+++.
T Consensus 208 g~~~e~~~~ai-~~GI~KiNi~T~ 230 (283)
T PRK08185 208 ANPDAEIAESV-QLGVGKINISSD 230 (283)
T ss_pred CCCHHHHHHHH-HCCCeEEEeChH
Confidence 6665 567777 688888877763
No 310
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=95.98 E-value=0.2 Score=48.72 Aligned_cols=145 Identities=16% Similarity=0.252 Sum_probs=88.1
Q ss_pred eeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccc
Q psy7343 206 LIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN 285 (487)
Q Consensus 206 v~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~ 285 (487)
+++.|...|...+.+-.+.+++..|.+.+..- .|.+- .+.-+-.++++.+++.+++|+.+-+ =+.
T Consensus 5 I~pSil~ad~~~l~~el~~l~~g~d~lH~DiM-------DG~FV----PN~tfg~~~i~~ir~~t~~~~DvHL----Mv~ 69 (229)
T PRK09722 5 ISPSLMCMDLLKFKEQIEFLNSKADYFHIDIM-------DGHFV----PNLTLSPFFVSQVKKLASKPLDVHL----MVT 69 (229)
T ss_pred EEeehhhcCHHHHHHHHHHHHhCCCEEEEecc-------cCccC----CCcccCHHHHHHHHhcCCCCeEEEE----Eec
Confidence 56667666777777666666555555443321 11111 1111112345556666677877765 445
Q ss_pred cHHHHHHHHHHcCCcEEEEEcccc-C-------------------------------------------CCCCCCCCCC-
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTV-D-------------------------------------------QRGMNTGLAS- 320 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~-~-------------------------------------------~~g~~~g~~~- 320 (487)
+...+.+.+.++|+|.|++|.-.. . -.+++.|...
T Consensus 70 ~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi 149 (229)
T PRK09722 70 DPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFI 149 (229)
T ss_pred CHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhcc
Confidence 788888888889999998887521 0 0122333322
Q ss_pred ---HHHHHHHHhhC-----CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc-ccc
Q psy7343 321 ---WEHITAVRKAL-----TIPVIANGNIQCLADVEACLAQTGVAGVMTAEG-NLY 367 (487)
Q Consensus 321 ---~~~i~~i~~~~-----~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa-~l~ 367 (487)
++.++++++.. ++.|-.-|||+ .+.+.++. +.|||.+.+|++ +..
T Consensus 150 ~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~-~aGad~~V~Gss~iF~ 203 (229)
T PRK09722 150 PEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLM-EAGADVFIVGTSGLFN 203 (229)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHH-HcCCCEEEEChHHHcC
Confidence 24455555432 46688999997 67788888 799999999975 443
No 311
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=95.97 E-value=0.046 Score=54.65 Aligned_cols=72 Identities=18% Similarity=0.255 Sum_probs=49.4
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCH-HHHHHHHhh-CCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW-EHITAVRKA-LTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~-~~i~~i~~~-~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
+..+..++.+. .+.|+|+|++ +.... .+. +.++.+++. .++|+++.||| +.+.+.++. ++|+|+++
T Consensus 189 ev~t~eea~~A-~~~gaD~I~l-d~~~p--------~~l~~~~~~~~~~~~~i~i~AsGGI-~~~ni~~~~-~~Gvd~I~ 256 (272)
T cd01573 189 EVDSLEEALAA-AEAGADILQL-DKFSP--------EELAELVPKLRSLAPPVLLAAAGGI-NIENAAAYA-AAGADILV 256 (272)
T ss_pred EcCCHHHHHHH-HHcCCCEEEE-CCCCH--------HHHHHHHHHHhccCCCceEEEECCC-CHHHHHHHH-HcCCcEEE
Confidence 45566665554 4799999999 43211 112 334434443 27999999999 789999998 79999997
Q ss_pred eccccc
Q psy7343 361 TAEGNL 366 (487)
Q Consensus 361 iGRa~l 366 (487)
+|.-..
T Consensus 257 vsai~~ 262 (272)
T cd01573 257 TSAPYY 262 (272)
T ss_pred EChhhc
Confidence 776433
No 312
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=95.92 E-value=0.076 Score=59.60 Aligned_cols=138 Identities=16% Similarity=0.158 Sum_probs=92.4
Q ss_pred CCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc
Q psy7343 202 EDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY 281 (487)
Q Consensus 202 ~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~ 281 (487)
.+.||-.|=+--|+.++.++... ..|+|=|-.+. | +.+.+.++++..+ .+++-+.+-+
T Consensus 110 v~~PvLrKDFIid~~QI~ea~~~---GADavLLI~~~-------------L--~~~~l~~l~~~a~-~lGme~LvEv--- 167 (695)
T PRK13802 110 VHIPVLRKDFIVTDYQIWEARAH---GADLVLLIVAA-------------L--DDAQLKHLLDLAH-ELGMTVLVET--- 167 (695)
T ss_pred CCCCEEeccccCCHHHHHHHHHc---CCCEeehhHhh-------------c--CHHHHHHHHHHHH-HcCCeEEEEe---
Confidence 36788877554465554443321 13333222111 1 3456777776544 4577777766
Q ss_pred cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 282 ~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
...+-++...++|++.|-|-.|.-. +-..+.+...++...+ ++.+|+-+||.+++|+.++. +.|+|+|
T Consensus 168 ----h~~~el~~a~~~ga~iiGINnRdL~-----tf~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l~-~~G~dav 237 (695)
T PRK13802 168 ----HTREEIERAIAAGAKVIGINARNLK-----DLKVDVNKYNELAADLPDDVIKVAESGVFGAVEVEDYA-RAGADAV 237 (695)
T ss_pred ----CCHHHHHHHHhCCCCEEEEeCCCCc-----cceeCHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHH-HCCCCEE
Confidence 2333445566689999989666432 2235677777777776 56788999999999999998 7999999
Q ss_pred EeccccccCccc
Q psy7343 360 MTAEGNLYNPAL 371 (487)
Q Consensus 360 miGRa~l~~P~l 371 (487)
.||.++|..|+.
T Consensus 238 LIGeslm~~~dp 249 (695)
T PRK13802 238 LVGEGVATADDH 249 (695)
T ss_pred EECHHhhCCCCH
Confidence 999999999874
No 313
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=95.92 E-value=0.11 Score=52.26 Aligned_cols=125 Identities=16% Similarity=0.178 Sum_probs=79.8
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|.+..-..+.-.++++.+.+.+ ++||++.+- .+..+..+.+
T Consensus 19 D~~~l~~l~~~l~~~--------Gv-~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~--~~t~~~i~~a 87 (289)
T cd00951 19 DEDAYRAHVEWLLSY--------GA-AALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG--YGTATAIAYA 87 (289)
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC--CCHHHHHHHH
Confidence 666777777766555 44 4455556566654334555566666665554 589999873 2667889999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEE-Ec--CCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI-AN--GNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi-~n--GgI~s~~da~~~l~ 352 (487)
+.+++.|+|++++..-. ... .+...-.++++.+.+.+++||+ +| |--.+++.+.++.+
T Consensus 88 ~~a~~~Gad~v~~~pP~-y~~--~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L~~ 148 (289)
T cd00951 88 QAAEKAGADGILLLPPY-LTE--APQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARLAE 148 (289)
T ss_pred HHHHHhCCCEEEECCCC-CCC--CCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 99999999999993211 000 1111234778888888899976 43 43346777777663
No 314
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=95.92 E-value=0.085 Score=51.83 Aligned_cols=138 Identities=20% Similarity=0.199 Sum_probs=78.4
Q ss_pred HHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc-ccccHHHHHHHHHHcCC
Q psy7343 222 AKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ-DVNKTVEYARMLERAGC 299 (487)
Q Consensus 222 a~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~-d~~~~~e~a~~le~~G~ 299 (487)
|+++++. +++|=+--.. ... .+|. -....-.++.+.+.++.|.+.+++||++.+..|. +..+..+.++.+.+.|+
T Consensus 22 A~~~e~~G~~ai~~s~~~-~~~-s~G~-pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~ 98 (243)
T cd00377 22 ARLAERAGFKAIYTSGAG-VAA-SLGL-PDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGA 98 (243)
T ss_pred HHHHHHcCCCEEEeccHH-HHH-hcCC-CCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 4556555 6666543221 111 1121 2222345777888888888888999999987753 34467777888899999
Q ss_pred cEEEEEccccCCC-CCCCCCC--C----HHHHHHHHhhC----CCcEEEcCC---C--CCHHHHHHH---HHhcCCcEEE
Q psy7343 300 QLLAVHGRTVDQR-GMNTGLA--S----WEHITAVRKAL----TIPVIANGN---I--QCLADVEAC---LAQTGVAGVM 360 (487)
Q Consensus 300 d~I~VhgRt~~~~-g~~~g~~--~----~~~i~~i~~~~----~iPVi~nGg---I--~s~~da~~~---l~~~Gad~Vm 360 (487)
++|.|-+.+...+ +...+.. . .+.++.+++.. +++|++-=| + .+.+++.+. ..+.|||+++
T Consensus 99 ~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~ 178 (243)
T cd00377 99 AGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIF 178 (243)
T ss_pred EEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEE
Confidence 9999954432221 1111111 1 13333344332 466666411 2 344554432 2258999999
Q ss_pred ec
Q psy7343 361 TA 362 (487)
Q Consensus 361 iG 362 (487)
+=
T Consensus 179 v~ 180 (243)
T cd00377 179 VE 180 (243)
T ss_pred eC
Confidence 85
No 315
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=95.91 E-value=0.011 Score=56.82 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=58.1
Q ss_pred cHHHHHHHHHH-cCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 286 KTVEYARMLER-AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 286 ~~~e~a~~le~-~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+....+...++ .|...+-+-. .+++..+..-+.++++++.. |+|+.|||+|++++.++. +.|||.+.+|..
T Consensus 151 ~iaa~y~la~~~~g~~~~YlEa-----gsga~~Pv~~e~v~~v~~~~--~LivGGGIrs~E~A~~~a-~agAD~IVtG~i 222 (240)
T COG1646 151 DIAAYYALAEKYLGMPVVYLEA-----GSGAGDPVPVEMVSRVLSDT--PLIVGGGIRSPEQAREMA-EAGADTIVTGTI 222 (240)
T ss_pred HHHHHHHHHHHHhCCeEEEEEe-----cCCCCCCcCHHHHHHhhccc--eEEEcCCcCCHHHHHHHH-HcCCCEEEECce
Confidence 44444444443 4666555521 12355666778888877765 999999999999999999 689999999999
Q ss_pred cccCccccc
Q psy7343 365 NLYNPALFT 373 (487)
Q Consensus 365 ~l~~P~lf~ 373 (487)
+..+|.-+.
T Consensus 223 iee~~~~~~ 231 (240)
T COG1646 223 IEEDPDKAL 231 (240)
T ss_pred eecCHHHHH
Confidence 999885443
No 316
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=95.90 E-value=0.024 Score=52.20 Aligned_cols=110 Identities=25% Similarity=0.356 Sum_probs=0.0
Q ss_pred HHHHHhhCCcCcEEEeecCC---------CcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHH
Q psy7343 219 TEAAKLAEPHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVE 289 (487)
Q Consensus 219 ~~aa~~~~~~~d~IdiN~Gc---------P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e 289 (487)
.+-|++++++ |. |..+...| |-+.+.||..+.+ +.++++|||.+|.|+| ..-
T Consensus 24 ~eQAkIAE~A--------GA~AVMaLervPadiR~~G--GVaRMsDP~~I~e----I~~aVsIPVMAK~RIG-----Hfv 84 (208)
T PF01680_consen 24 AEQAKIAEEA--------GAVAVMALERVPADIRAAG--GVARMSDPKMIKE----IMDAVSIPVMAKVRIG-----HFV 84 (208)
T ss_dssp HHHHHHHHHH--------T-SEEEE-SS-HHHHHHTT--S---S--HHHHHH----HHHH-SSEEEEEEETT------HH
T ss_pred HHHHHHHHHh--------CCeEEEEeccCCHhHHhcC--CccccCCHHHHHH----HHHheEeceeeccccc-----eee
Q ss_pred HHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 290 YARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 290 ~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
.++.|+..|+|+|.= .- ...++|.+. .--|..+++|.+. |-++.-.+.+-+ ..||..+
T Consensus 85 EAqiLealgVD~IDE-SE-------VLTpAD~~~-HI~K~~F~vPFVc--GarnLGEALRRI-~EGAaMI 142 (208)
T PF01680_consen 85 EAQILEALGVDYIDE-SE-------VLTPADEEN-HIDKHNFKVPFVC--GARNLGEALRRI-AEGAAMI 142 (208)
T ss_dssp HHHHHHHTT-SEEEE-ET-------TS--S-SS-----GGG-SS-EEE--EESSHHHHHHHH-HTT-SEE
T ss_pred hhhhHHHhCCceecc-cc-------ccccccccc-cccchhCCCCeEe--cCCCHHHHHhhH-Hhhhhhh
No 317
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=95.90 E-value=0.099 Score=52.73 Aligned_cols=126 Identities=9% Similarity=0.035 Sum_probs=81.5
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecC-CCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIG-CPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~G-cP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~ 290 (487)
|.+.+.+..+.+.+. | + ..+...|.+|....-..+.-.++++.+.+.+ ++||++.+-- .+..+..+.
T Consensus 19 D~~~~~~~i~~~i~~--------G~v-~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~~t~~~i~l 88 (290)
T TIGR00683 19 NEKGLRQIIRHNIDK--------MKV-DGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS-VNLKEAVEL 88 (290)
T ss_pred CHHHHHHHHHHHHhC--------CCc-CEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CCHHHHHHH
Confidence 666777777766555 5 4 4566677777755445666666777666655 4788887621 245578899
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEE-E-----cCCCCCHHHHHHHHH
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVI-A-----NGNIQCLADVEACLA 352 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi-~-----nGgI~s~~da~~~l~ 352 (487)
++..++.|+|+|++..-. ... .+...-.++++++.+.. ++||+ + .|--.+.+.+.++.+
T Consensus 89 a~~a~~~Gad~v~v~~P~-y~~--~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L~~ 154 (290)
T TIGR00683 89 GKYATELGYDCLSAVTPF-YYK--FSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGELYK 154 (290)
T ss_pred HHHHHHhCCCEEEEeCCc-CCC--CCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHHhc
Confidence 999999999999994321 110 11112346777787766 78886 3 366667777777763
No 318
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=95.89 E-value=0.049 Score=57.48 Aligned_cols=84 Identities=15% Similarity=0.200 Sum_probs=59.2
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccC--CCCCCCCCCCHHHHHHHHhhC---------CCcEEEcCCCCCHHHHHHHH
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVD--QRGMNTGLASWEHITAVRKAL---------TIPVIANGNIQCLADVEACL 351 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~--~~g~~~g~~~~~~i~~i~~~~---------~iPVi~nGgI~s~~da~~~l 351 (487)
+..+..++ ...++.|+|+|.+ |--.. .+.....+.-++.++++++.+ ++||++-||| +.+++.+++
T Consensus 306 StHs~eEl-~~A~~~gaDYI~l-GPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl 382 (437)
T PRK12290 306 STHGYYEL-LRIVQIQPSYIAL-GHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVW 382 (437)
T ss_pred ecCCHHHH-HHHhhcCCCEEEE-CCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHH
Confidence 45556664 4556789999999 53211 111122234577777766554 7999999999 789999999
Q ss_pred HhcCCcEEEeccccccCcc
Q psy7343 352 AQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 352 ~~~Gad~VmiGRa~l~~P~ 370 (487)
++|+++|.+-|+++..++
T Consensus 383 -~aGa~GVAVVSAI~~A~D 400 (437)
T PRK12290 383 -QCGVSSLAVVRAITLAED 400 (437)
T ss_pred -HcCCCEEEEehHhhcCCC
Confidence 799999999999986543
No 319
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=95.88 E-value=0.092 Score=52.87 Aligned_cols=125 Identities=19% Similarity=0.212 Sum_probs=77.7
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|....-..+.-.++++.+.+.+ ++||++-+-- .+..+..+.+
T Consensus 20 D~~~l~~~i~~l~~~--------Gv-~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~-~~~~~~i~~a 89 (292)
T PRK03170 20 DFAALRKLVDYLIAN--------GT-DGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS-NSTAEAIELT 89 (292)
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC-chHHHHHHHH
Confidence 667777777766555 33 3344445556554334455555666555554 4788876521 2456889999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE------cCCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA------NGNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~------nGgI~s~~da~~~l 351 (487)
+.+++.|+|+|++..-.. .. .+...-.++++++.+.+++||+. .|---+.+.+.++.
T Consensus 90 ~~a~~~G~d~v~~~pP~~-~~--~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g~~l~~~~~~~L~ 152 (292)
T PRK03170 90 KFAEKAGADGALVVTPYY-NK--PTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLA 152 (292)
T ss_pred HHHHHcCCCEEEECCCcC-CC--CCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHH
Confidence 999999999999943210 00 11112347778888888899873 35566777777775
No 320
>PRK02227 hypothetical protein; Provisional
Probab=95.87 E-value=0.33 Score=47.21 Aligned_cols=158 Identities=21% Similarity=0.175 Sum_probs=90.5
Q ss_pred HHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee-cccccccHHHHHHHHHH
Q psy7343 218 LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR-IYQDVNKTVEYARMLER 296 (487)
Q Consensus 218 ~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR-~~~d~~~~~e~a~~le~ 296 (487)
..|+...++...|.||+- -| .. |+-.-..+..+.+|++.+... .||+..+- +..+..+....+..+..
T Consensus 10 ~eEA~~Al~~GaDiIDvK--~P----~~---GaLGA~~p~vir~Iv~~~~~~--~pvSAtiGD~p~~p~~~~~aa~~~a~ 78 (238)
T PRK02227 10 LEEALEALAGGADIIDVK--NP----KE---GSLGANFPWVIREIVAAVPGR--KPVSATIGDVPYKPGTISLAALGAAA 78 (238)
T ss_pred HHHHHHHHhcCCCEEEcc--CC----CC---CCCCCCCHHHHHHHHHHhCCC--CCceeeccCCCCCchHHHHHHHHHHh
Confidence 445555555557888772 12 22 333345677888887776543 69999861 01122344455555667
Q ss_pred cCCcEEEEEccccCCCCCCCCCCCHHHHHHH----HhhC-CCcEEEcC--CCC-----CHHHHHHHHHhcCCcEEEeccc
Q psy7343 297 AGCQLLAVHGRTVDQRGMNTGLASWEHITAV----RKAL-TIPVIANG--NIQ-----CLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 297 ~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i----~~~~-~iPVi~nG--gI~-----s~~da~~~l~~~Gad~VmiGRa 364 (487)
+|+|+|-| |...... .....+.++.+ +... +..|++++ |-. ++.++.++..+.|++++|+=++
T Consensus 79 ~GvDyVKv-Gl~~~~~----~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa 153 (238)
T PRK02227 79 TGADYVKV-GLYGGKT----AEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTA 153 (238)
T ss_pred hCCCEEEE-cCCCCCc----HHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEecc
Confidence 99999999 6531111 00112333333 2222 45566543 211 5567777777899999999776
Q ss_pred cccCcccccCCCCCcHHHHHHHHHHHHHcC
Q psy7343 365 NLYNPALFTGQTRPAWELASEYLDLVAQYP 394 (487)
Q Consensus 365 ~l~~P~lf~~~~~~~~~~~~~~l~~~~~~~ 394 (487)
.=..-.+|.-. .++...+|.+..+.++
T Consensus 154 ~Kdg~~Lfd~l---~~~~L~~Fv~~ar~~G 180 (238)
T PRK02227 154 IKDGKSLFDHM---DEEELAEFVAEARSHG 180 (238)
T ss_pred cCCCcchHhhC---CHHHHHHHHHHHHHcc
Confidence 55556666532 3455667777777765
No 321
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=95.85 E-value=0.1 Score=52.80 Aligned_cols=123 Identities=15% Similarity=0.182 Sum_probs=80.2
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|.+..-..+.-.++++.+.+.+ ++||++.+-. .+..+..+.+
T Consensus 19 D~~~l~~lv~~~~~~--------Gv-~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~-~~t~~ai~~a 88 (294)
T TIGR02313 19 DEEALRELIEFQIEG--------GS-HAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA-LNHDETLELT 88 (294)
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc-chHHHHHHHH
Confidence 666777777766555 54 4555666667655334555556666555544 5888876521 2445778889
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCC---CCHHHHHHHHhhC-CCcEEE------cCCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGL---ASWEHITAVRKAL-TIPVIA------NGNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~---~~~~~i~~i~~~~-~iPVi~------nGgI~s~~da~~~l~ 352 (487)
+..++.|+|++++..-. |..+ ...++++.+.+.+ ++||+. .|--.+++.+.++.+
T Consensus 89 ~~A~~~Gad~v~v~pP~------y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~~ 153 (294)
T TIGR02313 89 KFAEEAGADAAMVIVPY------YNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLRK 153 (294)
T ss_pred HHHHHcCCCEEEEcCcc------CCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHHh
Confidence 99999999999994321 2221 2347788888888 899873 355567777777763
No 322
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=95.84 E-value=0.27 Score=48.19 Aligned_cols=105 Identities=20% Similarity=0.210 Sum_probs=69.0
Q ss_pred CCCeeeeec---cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe
Q psy7343 203 DRPLIIQFC---GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI 278 (487)
Q Consensus 203 ~~Pv~Vqi~---g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi 278 (487)
..||++-+- +.++++..+.++.+.++ +++|.|- +. ....+.+++++++ .++|++.+
T Consensus 73 ~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iE----------D~---------~~~~~~i~ai~~a-~i~ViaRt 132 (240)
T cd06556 73 LALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIE----------GG---------EWHIETLQMLTAA-AVPVIAHT 132 (240)
T ss_pred CCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEc----------Cc---------HHHHHHHHHHHHc-CCeEEEEe
Confidence 469999875 44667777777766666 4444433 21 1233445556554 47777655
Q ss_pred eccc-----------------ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcC
Q psy7343 279 RIYQ-----------------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANG 339 (487)
Q Consensus 279 R~~~-----------------d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nG 339 (487)
...+ +.++..+-++.++++|+|.|.+.+. +.+.++++.+.+++|++++|
T Consensus 133 d~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~------------~~e~~~~i~~~~~~P~~~~g 198 (240)
T cd06556 133 GLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV------------PVELAKQITEALAIPLAGIG 198 (240)
T ss_pred CCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC------------CHHHHHHHHHhCCCCEEEEe
Confidence 3311 1235566678889999999999322 57889999999999999876
No 323
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=95.84 E-value=0.38 Score=48.74 Aligned_cols=100 Identities=18% Similarity=0.300 Sum_probs=64.9
Q ss_pred cCChHHHHHHHHHHhhhccCcEEEEe-eccc---c---------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCC--C
Q psy7343 253 QDDWPLLTNLVSSLRQAVQVPVSCKI-RIYQ---D---------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT--G 317 (487)
Q Consensus 253 ~~d~~~i~eiv~~v~~~~~iPV~vKi-R~~~---d---------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~--g 317 (487)
..|-+...++++..+ ..++.|-+-+ +++. + ..+..+..+..+++|+|.+.|.=.|.-+. |. +
T Consensus 111 eeNi~~T~~vve~Ah-~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~--Yk~~~ 187 (307)
T PRK05835 111 EENLELTSKVVKMAH-NAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGA--FKFKG 187 (307)
T ss_pred HHHHHHHHHHHHHHH-HcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccccc--cCCCC
Confidence 345566666666544 3466665532 2221 1 12468888888999999998733333222 43 3
Q ss_pred --CCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcC
Q psy7343 318 --LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTG 355 (487)
Q Consensus 318 --~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~G 355 (487)
.-+|+.+++|++.+++|++.-|+=..+++..+.+..+|
T Consensus 188 ~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~~~~~~~g 227 (307)
T PRK05835 188 EPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAG 227 (307)
T ss_pred CCccCHHHHHHHHHHhCCCEEEeCCCCCchHHhhhhhhhc
Confidence 35889999999999999999888888886554443444
No 324
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.84 E-value=0.21 Score=50.11 Aligned_cols=142 Identities=19% Similarity=0.284 Sum_probs=92.1
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccc--cCChHHHHHHHHHHhhhccCcEEEEe-
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVSSLRQAVQVPVSCKI- 278 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l--~~d~~~i~eiv~~v~~~~~iPV~vKi- 278 (487)
..||.+.+. +.+.+...++. +..|+- +-.. ||.+ ..+.+...++++... ..+++|-+-+
T Consensus 74 ~vPV~lHLDH~~~~e~i~~Ai---~~GftS----------VM~D---gS~l~~eeNi~~T~~vve~Ah-~~gv~VEaElG 136 (283)
T PRK07998 74 DVPVSLHLDHGKTFEDVKQAV---RAGFTS----------VMID---GAALPFEENIAFTKEAVDFAK-SYGVPVEAELG 136 (283)
T ss_pred CCCEEEECcCCCCHHHHHHHH---HcCCCE----------EEEe---CCCCCHHHHHHHHHHHHHHHH-HcCCEEEEEec
Confidence 569999987 55555444443 222322 2222 2333 345666777776554 3588775532
Q ss_pred ecccc----------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC-CCCHHHHHHHHhhCCCcEEEcCCCCCH-HH
Q psy7343 279 RIYQD----------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG-LASWEHITAVRKALTIPVIANGNIQCL-AD 346 (487)
Q Consensus 279 R~~~d----------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g-~~~~~~i~~i~~~~~iPVi~nGgI~s~-~d 346 (487)
++++. ..+..+..+.++++|+|.+.|.-.|..+. |.+ .-+++.+++|++.+++|++.-||=..+ ++
T Consensus 137 ~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~--Y~~p~l~~~~l~~I~~~~~vPLVlHGgSG~~~e~ 214 (283)
T PRK07998 137 AILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGL--EDIPRIDIPLLKRIAEVSPVPLVIHGGSGIPPEI 214 (283)
T ss_pred cCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccC--CCCCCcCHHHHHHHHhhCCCCEEEeCCCCCCHHH
Confidence 22211 24678888889999999998733333322 544 236899999999999999987776666 56
Q ss_pred HHHHHHhcCCcEEEeccc
Q psy7343 347 VEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 347 a~~~l~~~Gad~VmiGRa 364 (487)
+.+++ ..|+..|=++|.
T Consensus 215 ~~~ai-~~Gi~KiNi~Te 231 (283)
T PRK07998 215 LRSFV-NYKVAKVNIASD 231 (283)
T ss_pred HHHHH-HcCCcEEEECHH
Confidence 77787 789999999874
No 325
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=95.83 E-value=0.083 Score=54.88 Aligned_cols=45 Identities=18% Similarity=0.460 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 317 g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
...+|+.++.+++..++|||. .||.+.+|++++. +.|+|+|.++-
T Consensus 209 ~~~tW~di~wlr~~~~~Piiv-KgV~~~~dA~~a~-~~Gvd~I~Vsn 253 (367)
T PLN02493 209 RTLSWKDVQWLQTITKLPILV-KGVLTGEDARIAI-QAGAAGIIVSN 253 (367)
T ss_pred CCCCHHHHHHHHhccCCCEEe-ecCCCHHHHHHHH-HcCCCEEEECC
Confidence 345899999999999999998 6788999999999 79999998864
No 326
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.83 E-value=0.11 Score=50.33 Aligned_cols=151 Identities=14% Similarity=0.135 Sum_probs=93.0
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcc---ee--e---ccC-----ccccccCChHHHHHHHH----
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQM---VA--K---RGH-----YGAYLQDDWPLLTNLVS---- 264 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~---i~--~---~gr-----~G~~l~~d~~~i~eiv~---- 264 (487)
..+++.=+++.++++..+.++.+.+. ...|||-+-.|.. +. + +.. .|+.-.-+.+.+.+.++
T Consensus 14 ~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~ 93 (222)
T PRK07114 14 ATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGAN 93 (222)
T ss_pred hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCC
Confidence 35677778888888888888877665 7888887765542 10 0 011 11111223444433222
Q ss_pred -------------HHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC
Q psy7343 265 -------------SLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL 331 (487)
Q Consensus 265 -------------~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~ 331 (487)
..++ .++|++= ...+..|+... .++|++.|-+..-. ..| ..+++.++.-+
T Consensus 94 FiVsP~~~~~v~~~~~~-~~i~~iP------G~~TpsEi~~A-~~~Ga~~vKlFPA~------~~G---~~~ikal~~p~ 156 (222)
T PRK07114 94 FIVTPLFNPDIAKVCNR-RKVPYSP------GCGSLSEIGYA-EELGCEIVKLFPGS------VYG---PGFVKAIKGPM 156 (222)
T ss_pred EEECCCCCHHHHHHHHH-cCCCEeC------CCCCHHHHHHH-HHCCCCEEEECccc------ccC---HHHHHHHhccC
Confidence 2221 1333322 33455565544 46899999883310 112 46777877766
Q ss_pred -CCcEEEcCCCCC-HHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 332 -TIPVIANGNIQC-LADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 332 -~iPVi~nGgI~s-~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+++++..|||.. .+++.+.+ ..|+.+|.+|+.+..+..+
T Consensus 157 p~i~~~ptGGV~~~~~n~~~yl-~aGa~avg~Gs~L~~~~~~ 197 (222)
T PRK07114 157 PWTKIMPTGGVEPTEENLKKWF-GAGVTCVGMGSKLIPKEAL 197 (222)
T ss_pred CCCeEEeCCCCCcchhcHHHHH-hCCCEEEEEChhhcCcccc
Confidence 799999999985 58999999 5999999999987755443
No 327
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=95.81 E-value=0.13 Score=49.26 Aligned_cols=146 Identities=17% Similarity=0.191 Sum_probs=80.9
Q ss_pred CeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccccc
Q psy7343 205 PLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDV 284 (487)
Q Consensus 205 Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~ 284 (487)
++.+-+.-.+.++..+.++.+....++|+++..+ . . .+| + ++++.+++...+++.+|+ .|.
T Consensus 5 ~l~~alD~~~~~~~~~~~~~~~~~~~~vk~g~~l-~--~---~~G------~----~~v~~ir~~~~i~~D~k~---~di 65 (215)
T PRK13813 5 RIILALDVTDRERALKIAEELDDYVDAIKVGWPL-V--L---ASG------L----GIIEELKRYAPVIADLKV---ADI 65 (215)
T ss_pred CEEEEeCCCCHHHHHHHHHhccccCCEEEEcHHH-H--H---hhC------H----HHHHHHHhcCCEEEEeec---ccc
Confidence 3445554455666666666555555566665332 1 0 012 2 445556665556666665 233
Q ss_pred c-cHHHHHHHHHHcCCcEEEEEccccC-----------CCC--------------------------------CCCCC--
Q psy7343 285 N-KTVEYARMLERAGCQLLAVHGRTVD-----------QRG--------------------------------MNTGL-- 318 (487)
Q Consensus 285 ~-~~~e~a~~le~~G~d~I~VhgRt~~-----------~~g--------------------------------~~~g~-- 318 (487)
. +...+++.+.+.|+|.|++|..... +.| +..|.
T Consensus 66 ~~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~ 145 (215)
T PRK13813 66 PNTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVA 145 (215)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEE
Confidence 3 2333447777889999999875310 000 00000
Q ss_pred --CCHHHHHHHHhhCCCc-EEEcCCCCCH-HHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 319 --ASWEHITAVRKALTIP-VIANGNIQCL-ADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 319 --~~~~~i~~i~~~~~iP-Vi~nGgI~s~-~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
...+.++++++..+-+ .+..|||+.. .++.+++ +.|+|.+.+||+++..++
T Consensus 146 ~~~~~~~i~~l~~~~~~~~~ivdgGI~~~g~~~~~~~-~aGad~iV~Gr~I~~~~d 200 (215)
T PRK13813 146 PATRPERVRYIRSRLGDELKIISPGIGAQGGKAADAI-KAGADYVIVGRSIYNAAD 200 (215)
T ss_pred CCCcchhHHHHHHhcCCCcEEEeCCcCCCCCCHHHHH-HcCCCEEEECcccCCCCC
Confidence 0123444555555332 3377899864 2477777 689999999999776654
No 328
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=95.79 E-value=0.13 Score=58.72 Aligned_cols=70 Identities=13% Similarity=0.198 Sum_probs=54.2
Q ss_pred CCcEEEEEccccC--CCCCCCCCCCHHHHHHHHhhCC---CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 298 GCQLLAVHGRTVD--QRGMNTGLASWEHITAVRKALT---IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 298 G~d~I~VhgRt~~--~~g~~~g~~~~~~i~~i~~~~~---iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
|+|+|.+ |--.. .++.......|+.++++++.++ +||++-||| +.+++.+++ ++|++||.+.++++..++
T Consensus 128 gaDYi~~-Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~-~~Ga~giAvisai~~a~d 202 (755)
T PRK09517 128 LPDVIGI-GPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELA-ATGIDGLCVVSAIMAAAN 202 (755)
T ss_pred CCCEEEE-CCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHH-HcCCCEEEEehHhhCCCC
Confidence 5999999 53211 1111223346899999998887 999999999 789999999 799999999999987655
No 329
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=95.77 E-value=0.56 Score=45.46 Aligned_cols=154 Identities=22% Similarity=0.233 Sum_probs=88.1
Q ss_pred HHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee-cccccccHHHHHHHHHH
Q psy7343 218 LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR-IYQDVNKTVEYARMLER 296 (487)
Q Consensus 218 ~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR-~~~d~~~~~e~a~~le~ 296 (487)
..|+...++...|.||+- -| ..|..| -..+..+.+|++.+.. ..||++.+- +..+.......+.....
T Consensus 10 ~~EA~~a~~~gaDiID~K--~P----~~GaLG---A~~~~vi~~i~~~~~~--~~pvSAtiGDlp~~p~~~~~aa~~~a~ 78 (235)
T PF04476_consen 10 VEEAEEALAGGADIIDLK--NP----AEGALG---ALFPWVIREIVAAVPG--RKPVSATIGDLPMKPGTASLAALGAAA 78 (235)
T ss_pred HHHHHHHHhCCCCEEEcc--CC----CCCCCC---CCCHHHHHHHHHHcCC--CCceEEEecCCCCCchHHHHHHHHHHh
Confidence 445555555568888772 12 233333 3457777777665432 379999871 11122233334444556
Q ss_pred cCCcEEEEEccccCCCCCCCCCCCH----HHHHHH----HhhC-CCcEEEcC--CC-----CCHHHHHHHHHhcCCcEEE
Q psy7343 297 AGCQLLAVHGRTVDQRGMNTGLASW----EHITAV----RKAL-TIPVIANG--NI-----QCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 297 ~G~d~I~VhgRt~~~~g~~~g~~~~----~~i~~i----~~~~-~iPVi~nG--gI-----~s~~da~~~l~~~Gad~Vm 360 (487)
+|+|+|-| |= + |..++ +.++.+ ++.- +..+++.+ |- .++.++.+...+.|++++|
T Consensus 79 ~GvdyvKv-Gl-------~-g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvM 149 (235)
T PF04476_consen 79 TGVDYVKV-GL-------F-GCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVM 149 (235)
T ss_pred cCCCEEEE-ec-------C-CCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEE
Confidence 89999999 43 2 21222 333333 2221 34455543 22 1455667777789999999
Q ss_pred eccccccCcccccCCCCCcHHHHHHHHHHHHHcC
Q psy7343 361 TAEGNLYNPALFTGQTRPAWELASEYLDLVAQYP 394 (487)
Q Consensus 361 iGRa~l~~P~lf~~~~~~~~~~~~~~l~~~~~~~ 394 (487)
+=++.=....+|.-. ..+.+.+|.+..+.++
T Consensus 150 lDTa~Kdg~~L~d~~---~~~~L~~Fv~~ar~~g 180 (235)
T PF04476_consen 150 LDTADKDGGSLFDHL---SEEELAEFVAQARAHG 180 (235)
T ss_pred EecccCCCCchhhcC---CHHHHHHHHHHHHHcc
Confidence 999877777887643 3455667777777665
No 330
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=95.75 E-value=0.13 Score=51.88 Aligned_cols=123 Identities=11% Similarity=0.133 Sum_probs=80.7
Q ss_pred CHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHH
Q psy7343 214 DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 214 d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~ 290 (487)
|.+.+.+.++.+.+ . |+ ..+...|.+|....-..+.-.++++.+.+.+ ++||++.+-- .+..+..+.
T Consensus 22 D~~~~~~li~~l~~~~--------Gv-~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~-~~t~~ai~~ 91 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQ--------GI-DGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGS-VNTAEAQEL 91 (293)
T ss_pred CHHHHHHHHHHHHhcC--------CC-CEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCC-CCHHHHHHH
Confidence 66777777776665 5 44 4455556667654334555566666666555 4788887611 245678888
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCC---CCHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHHHHH
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGL---ASWEHITAVRKALTIPVIA-N-----GNIQCLADVEACLA 352 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~---~~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~~l~ 352 (487)
++.+++.|+|++++..-. |..+ .-.++++++.+.+++||+. | |--.+++.+.++.+
T Consensus 92 a~~a~~~Gad~v~v~~P~------y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L~~ 156 (293)
T PRK04147 92 AKYATELGYDAISAVTPF------YYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELFT 156 (293)
T ss_pred HHHHHHcCCCEEEEeCCc------CCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHHhc
Confidence 999999999999995421 2221 2347788888888999874 2 55557777777763
No 331
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.74 E-value=0.072 Score=54.30 Aligned_cols=129 Identities=15% Similarity=0.099 Sum_probs=72.5
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHH-cCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-C
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLER-AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-T 332 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~-~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~ 332 (487)
+.+...++++.++.....-+.+-+ |...++.+.+.+.++. .|+|.|.|.-- + +++ ..-.+.++++|+.. +
T Consensus 80 ~~e~~~~fv~~~~~~~~~~~~vav--G~~~~d~er~~~L~~~~~g~D~iviD~A---h--Ghs-~~~i~~ik~ik~~~P~ 151 (346)
T PRK05096 80 SVEEWAAFVNNSSADVLKHVMVST--GTSDADFEKTKQILALSPALNFICIDVA---N--GYS-EHFVQFVAKAREAWPD 151 (346)
T ss_pred CHHHHHHHHHhccccccceEEEEe--cCCHHHHHHHHHHHhcCCCCCEEEEECC---C--CcH-HHHHHHHHHHHHhCCC
Confidence 455555666656543322233322 2233344444444442 69999999211 0 011 11248899999887 6
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEec--cccccCcccccCCCCCcHHHHHHHHHHHHHc
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTA--EGNLYNPALFTGQTRPAWELASEYLDLVAQY 393 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiG--Ra~l~~P~lf~~~~~~~~~~~~~~l~~~~~~ 393 (487)
++||+ |+|-|++.++.++ ..|||+|=+| -|-+-.--+..+...+....+.+--+.+.++
T Consensus 152 ~~vIa-GNV~T~e~a~~Li-~aGAD~vKVGIGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~ 212 (346)
T PRK05096 152 KTICA-GNVVTGEMVEELI-LSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGL 212 (346)
T ss_pred CcEEE-ecccCHHHHHHHH-HcCCCEEEEcccCCccccCccccccChhHHHHHHHHHHHHHHc
Confidence 77777 9999999999998 7999997655 3433333343333333333333333444444
No 332
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=95.74 E-value=1.3 Score=42.45 Aligned_cols=176 Identities=8% Similarity=0.118 Sum_probs=92.4
Q ss_pred cCCCchHHHHHHHHhCCccceeccc--cchhhhcChhHHHHHHhcCCCCC-CeeeeeccCCHHHHHHHHHhhCCc-CcEE
Q psy7343 157 VDASELPWRLLSRRYGSHLCYTPMV--SAHQFIADKKLRQEILMSTPEDR-PLIIQFCGNDSKNLTEAAKLAEPH-CDGI 232 (487)
Q Consensus 157 a~~td~~fr~i~~~~Ga~l~~t~~v--~~~~Ll~~~~~~~~~l~~~~~~~-Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~I 232 (487)
.|+++..=...+.++|++.+. +| ..+.=.-+++...++.+..+... +|.|- ...++++..++++ .. .|.|
T Consensus 6 CGit~~eda~~~~~~GaD~iG--fIf~~~SpR~V~~~~a~~i~~~~~~~~~~VgVf-~~~~~~~i~~~~~---~~~~d~v 79 (207)
T PRK13958 6 CGFTTIKDVTAASQLPIDAIG--FIHYEKSKRHQTITQIKKLASAVPNHIDKVCVV-VNPDLTTIEHILS---NTSINTI 79 (207)
T ss_pred cCCCcHHHHHHHHHcCCCEEE--EecCCCCcccCCHHHHHHHHHhCCCCCCEEEEE-eCCCHHHHHHHHH---hCCCCEE
Confidence 455555444567778886532 22 11111123445555655333222 23322 2345666555544 33 4555
Q ss_pred EeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCC
Q psy7343 233 DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQ 311 (487)
Q Consensus 233 diN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~ 311 (487)
+|| |. .+++.+.+ +++.. .++++--++.. . ...+.+..... .+|++.+.... .+
T Consensus 80 QLH----------G~------e~~~~~~~----l~~~~~~~~iika~~~~--~-~~~~~~~~~~~-~~d~~LlDs~~-~~ 134 (207)
T PRK13958 80 QLH----------GT------ESIDFIQE----IKKKYSSIKIIKALPAD--E-NIIQNINKYKG-FVDLFIIDTPS-VS 134 (207)
T ss_pred EEC----------CC------CCHHHHHH----HhhcCCCceEEEEeccc--H-HHHHHHHHHHh-hCCEEEEcCCC-CC
Confidence 555 32 23444333 44332 35665555432 1 11222222222 48999996532 22
Q ss_pred CCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHH-hcCCcEEEecccccc
Q psy7343 312 RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLA-QTGVAGVMTAEGNLY 367 (487)
Q Consensus 312 ~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~-~~Gad~VmiGRa~l~ 367 (487)
.|+..-..+|+.++++ ...|++.+|||+ ++.+.++++ ..+..+|-+.+|.=.
T Consensus 135 ~GGtG~~~dw~~~~~~---~~~p~iLAGGL~-peNV~~a~~~~~~p~gVDvsSGVE~ 187 (207)
T PRK13958 135 YGGTGQTYDWTILKHI---KDIPYLIAGGIN-SENIQTVEQLKLSHQGYDIASGIET 187 (207)
T ss_pred CCcCCcEeChHHhhhc---cCCCEEEECCCC-HHHHHHHHhcCCCCCEEEcccccCC
Confidence 2322234689988765 346999999995 777777764 457789999888753
No 333
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.71 E-value=0.098 Score=53.32 Aligned_cols=96 Identities=16% Similarity=0.117 Sum_probs=60.5
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHc--CCcEEEEEccccCCCCCCCCCC--CHHHHHHHHhh
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERA--GCQLLAVHGRTVDQRGMNTGLA--SWEHITAVRKA 330 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~--G~d~I~VhgRt~~~~g~~~g~~--~~~~i~~i~~~ 330 (487)
+.+...++++.++.....-+.+-+ |... +..+.++.|.++ |+|.|.|.-- .|.. -.+.++++++.
T Consensus 79 ~~e~~~~~v~~~~~~~~~~~~vsv--G~~~-~d~er~~~L~~a~~~~d~iviD~A--------hGhs~~~i~~ik~ir~~ 147 (343)
T TIGR01305 79 SVDEWKAFATNSSPDCLQNVAVSS--GSSD-NDLEKMTSILEAVPQLKFICLDVA--------NGYSEHFVEFVKLVREA 147 (343)
T ss_pred CHHHHHHHHHhhcccccceEEEEe--ccCH-HHHHHHHHHHhcCCCCCEEEEECC--------CCcHHHHHHHHHHHHhh
Confidence 355555555544433322333332 2222 334555556665 5999999211 1212 24789999998
Q ss_pred CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 331 LTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 331 ~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
..-+.+..|+|.|++++++++ +.|||+|-+|
T Consensus 148 ~p~~~viaGNV~T~e~a~~Li-~aGAD~ikVg 178 (343)
T TIGR01305 148 FPEHTIMAGNVVTGEMVEELI-LSGADIVKVG 178 (343)
T ss_pred CCCCeEEEecccCHHHHHHHH-HcCCCEEEEc
Confidence 865566669999999999999 7999999877
No 334
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=95.67 E-value=0.0087 Score=55.61 Aligned_cols=72 Identities=26% Similarity=0.368 Sum_probs=54.7
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
|........+.+++...|+|-| +.| .-...++++++.+++|||+.|=|.+.+|+.+++ +.||++|..+
T Consensus 102 DS~al~~~~~~i~~~~PD~vEi----------lPg-~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al-~aGa~aVSTS 169 (175)
T PF04309_consen 102 DSSALETGIKQIEQSKPDAVEI----------LPG-VMPKVIKKIREETNIPIIAGGLIRTKEDVEEAL-KAGADAVSTS 169 (175)
T ss_dssp SHHHHHHHHHHHHHHT-SEEEE----------ESC-CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHC-CTTCEEEEE-
T ss_pred cHHHHHHHHHHHhhcCCCEEEE----------chH-HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHH-HcCCEEEEcC
Confidence 6667778888999999999999 444 334677888888999999999999999999999 8999999887
Q ss_pred cccc
Q psy7343 363 EGNL 366 (487)
Q Consensus 363 Ra~l 366 (487)
..-|
T Consensus 170 ~~~L 173 (175)
T PF04309_consen 170 NKEL 173 (175)
T ss_dssp -HHH
T ss_pred ChHh
Confidence 5433
No 335
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=95.67 E-value=0.15 Score=52.36 Aligned_cols=110 Identities=7% Similarity=0.065 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhhccCcEEEEe-eccc---c-------cccHHHHHHHHHHcCCcEEEEEccccC--C----------CCC
Q psy7343 258 LLTNLVSSLRQAVQVPVSCKI-RIYQ---D-------VNKTVEYARMLERAGCQLLAVHGRTVD--Q----------RGM 314 (487)
Q Consensus 258 ~i~eiv~~v~~~~~iPV~vKi-R~~~---d-------~~~~~e~a~~le~~G~d~I~VhgRt~~--~----------~g~ 314 (487)
.+.+++++.. ..++|+.+=. ..|. + .+.....++...+.|+|.|-+ .-+.. . ...
T Consensus 180 ~l~~i~~ea~-~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv-~yp~~~~~f~~v~~~~~~~~~ 257 (348)
T PRK09250 180 EISEAFEEAH-ELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQ-KLPTNNGGYKAINFGKTDDRV 257 (348)
T ss_pred HHHHHHHHHH-HhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEe-cCCCChhhHHHhhcccccccc
Confidence 3444444433 3589988711 1121 1 123455677888999999988 21110 0 000
Q ss_pred CCC---CCCHHHHHHHHhhC---CCcEEEcCCCC-CHHHHHHHHH------hcCCcEEEeccccccCc
Q psy7343 315 NTG---LASWEHITAVRKAL---TIPVIANGNIQ-CLADVEACLA------QTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 315 ~~g---~~~~~~i~~i~~~~---~iPVi~nGgI~-s~~da~~~l~------~~Gad~VmiGRa~l~~P 369 (487)
|.+ ...-+.++.+.+.+ .+||+..||=. +.+++.++.+ +.|+.|+.+||=....|
T Consensus 258 ~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~ 325 (348)
T PRK09250 258 YSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRP 325 (348)
T ss_pred cccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcCC
Confidence 111 11236667777776 79999888877 4444444322 46999999999766655
No 336
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.62 E-value=0.13 Score=50.61 Aligned_cols=76 Identities=22% Similarity=0.274 Sum_probs=61.8
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+..++++.+++.|+++|.|..- . .++.| +++.++++++.+++||+..+.|.++.++.+.. ..|||+|.+=-+
T Consensus 61 ~d~~~~A~~y~~~GA~aISVlTe---~-~~F~G--s~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~-~~GADavLLI~~ 133 (247)
T PRK13957 61 YHPVQIAKTYETLGASAISVLTD---Q-SYFGG--SLEDLKSVSSELKIPVLRKDFILDEIQIREAR-AFGASAILLIVR 133 (247)
T ss_pred CCHHHHHHHHHHCCCcEEEEEcC---C-CcCCC--CHHHHHHHHHhcCCCEEeccccCCHHHHHHHH-HcCCCEEEeEHh
Confidence 37889999999999999988321 1 12333 68999999999999999999999999999998 699999976544
Q ss_pred ccc
Q psy7343 365 NLY 367 (487)
Q Consensus 365 ~l~ 367 (487)
++.
T Consensus 134 ~L~ 136 (247)
T PRK13957 134 ILT 136 (247)
T ss_pred hCC
Confidence 443
No 337
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=95.59 E-value=0.18 Score=54.84 Aligned_cols=81 Identities=17% Similarity=0.323 Sum_probs=58.7
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccC--CCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCc---
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVD--QRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVA--- 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~--~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad--- 357 (487)
+..+..+ +....+.|+|+|.+ |--.. .++ ...+..++.++++.+..++||++-|||. .+++.+++ .+|++
T Consensus 396 S~h~~~e-~~~a~~~gadyi~~-gpif~t~tk~-~~~~~g~~~~~~~~~~~~~Pv~aiGGI~-~~~~~~~~-~~G~~~~~ 470 (502)
T PLN02898 396 SCKTPEQ-AEQAWKDGADYIGC-GGVFPTNTKA-NNKTIGLDGLREVCEASKLPVVAIGGIS-ASNAASVM-ESGAPNLK 470 (502)
T ss_pred eCCCHHH-HHHHhhcCCCEEEE-CCeecCCCCC-CCCCCCHHHHHHHHHcCCCCEEEECCCC-HHHHHHHH-HcCCCcCc
Confidence 3345544 45556789999987 32111 111 1223468999999888899999999995 89999988 78888
Q ss_pred EEEeccccccC
Q psy7343 358 GVMTAEGNLYN 368 (487)
Q Consensus 358 ~VmiGRa~l~~ 368 (487)
+|.++++++..
T Consensus 471 gvav~~~i~~~ 481 (502)
T PLN02898 471 GVAVVSALFDQ 481 (502)
T ss_pred eEEEEeHHhcC
Confidence 99999998854
No 338
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.59 E-value=0.36 Score=48.52 Aligned_cols=145 Identities=18% Similarity=0.299 Sum_probs=89.5
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-ec
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-RI 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R~ 280 (487)
..||.+.+. +.+.+...++. +. |. ..+-..+. .-.+..|-+...++++..+ ..++.|-+-+ ++
T Consensus 74 ~VPV~lHLDHg~~~e~i~~Ai----~~--------Gf-tSVM~DgS-~l~~eeNi~~T~~vv~~Ah-~~gv~VEaElG~v 138 (284)
T PRK09195 74 HHPLALHLDHHEKFDDIAQKV----RS--------GV-RSVMIDGS-HLPFAQNISLVKEVVDFCH-RFDVSVEAELGRL 138 (284)
T ss_pred CCCEEEECCCCCCHHHHHHHH----Hc--------CC-CEEEeCCC-CCCHHHHHHHHHHHHHHHH-HcCCEEEEEEecc
Confidence 579999997 55554433333 22 33 22223221 1122456667777776554 3466665532 22
Q ss_pred cc---c---------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC--CCCHHHHHHHHhhCCCcEEEcCCCCC-HH
Q psy7343 281 YQ---D---------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG--LASWEHITAVRKALTIPVIANGNIQC-LA 345 (487)
Q Consensus 281 ~~---d---------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g--~~~~~~i~~i~~~~~iPVi~nGgI~s-~~ 345 (487)
++ + ..+.++..+.++++|+|.+.|.-.|.-.. |.+ .-+++.+++|++.+++|++.-|+=.. .+
T Consensus 139 gg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~--y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e 216 (284)
T PRK09195 139 GGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGM--YKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTK 216 (284)
T ss_pred cCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccc--cCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHH
Confidence 21 1 13667888888899999998833332222 444 34789999999999999987665444 45
Q ss_pred HHHHHHHhcCCcEEEecccc
Q psy7343 346 DVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 346 da~~~l~~~Gad~VmiGRa~ 365 (487)
++.+++ ..|+.-|=+++.+
T Consensus 217 ~~~~ai-~~Gi~KiNi~T~l 235 (284)
T PRK09195 217 DIQQTI-KLGICKVNVATEL 235 (284)
T ss_pred HHHHHH-HcCCeEEEeCcHH
Confidence 677787 7899888888754
No 339
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=95.59 E-value=0.18 Score=50.04 Aligned_cols=115 Identities=17% Similarity=0.168 Sum_probs=71.1
Q ss_pred HHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHH
Q psy7343 217 NLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLE 295 (487)
Q Consensus 217 ~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le 295 (487)
+..+.|+..+++ +++|-++ +-...+++ +.+ .++++++.+++||..| |.-....-+..+.
T Consensus 71 ~~~~~A~~~~~~GA~aisvl-------te~~~f~g----~~~----~l~~v~~~v~iPvl~k-----dfi~~~~qi~~a~ 130 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSVL-------TDERFFQG----SLE----YLRAARAAVSLPVLRK-----DFIIDPYQIYEAR 130 (260)
T ss_pred CHHHHHHHHHhCCCeEEEEe-------cccccCCC----CHH----HHHHHHHhcCCCEEee-----eecCCHHHHHHHH
Confidence 456777777766 4555222 11222232 333 4445777789999987 4332222466778
Q ss_pred HcCCcEEEEEccccCCCCCCCCCCCH-HHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 296 RAGCQLLAVHGRTVDQRGMNTGLASW-EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 296 ~~G~d~I~VhgRt~~~~g~~~g~~~~-~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
++|+|+|.+.++.. ..... +.+... +.+++.+++ ++.|.+++++.. +.|+|.+.+.
T Consensus 131 ~~GAD~VlLi~~~l-------~~~~l~~li~~a-~~lGl~~lv--evh~~~E~~~A~-~~gadiIgin 187 (260)
T PRK00278 131 AAGADAILLIVAAL-------DDEQLKELLDYA-HSLGLDVLV--EVHDEEELERAL-KLGAPLIGIN 187 (260)
T ss_pred HcCCCEEEEEeccC-------CHHHHHHHHHHH-HHcCCeEEE--EeCCHHHHHHHH-HcCCCEEEEC
Confidence 89999999965531 11123 333333 345777776 899999999888 6899988874
No 340
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=95.54 E-value=0.14 Score=50.28 Aligned_cols=110 Identities=15% Similarity=0.263 Sum_probs=72.7
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC-CCCHHHHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG-LASWEHITAV 327 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g-~~~~~~i~~i 327 (487)
|+....+.+++..+- ..+.||.+|--...+.+++..+++.+.+.|..-|++-=|.....+.... ..|...+..+
T Consensus 105 gs~~~~n~~LL~~va-----~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~l 179 (250)
T PRK13397 105 GARNMQNFEFLKTLS-----HIDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPII 179 (250)
T ss_pred CcccccCHHHHHHHH-----ccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHH
Confidence 344455666665533 3489999997544567788999999999999777664443332221212 4577888889
Q ss_pred HhhCCCcEEEc----CCCCCH--HHHHHHHHhcCCcEEEeccc
Q psy7343 328 RKALTIPVIAN----GNIQCL--ADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 328 ~~~~~iPVi~n----GgI~s~--~da~~~l~~~Gad~VmiGRa 364 (487)
++..++||++. +|.+.. .-+...+ ..||||++|-+-
T Consensus 180 k~~~~lPVivd~SHs~G~r~~v~~~a~AAv-A~GAdGl~IE~H 221 (250)
T PRK13397 180 QQKTDLPIIVDVSHSTGRRDLLLPAAKIAK-AVGANGIMMEVH 221 (250)
T ss_pred HHHhCCCeEECCCCCCcccchHHHHHHHHH-HhCCCEEEEEec
Confidence 98889999884 444332 2234444 689999998753
No 341
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.54 E-value=0.16 Score=48.45 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=86.1
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCccee----eccCcc-----ccccCChHHHHHHH---------
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVA----KRGHYG-----AYLQDDWPLLTNLV--------- 263 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~----~~gr~G-----~~l~~d~~~i~eiv--------- 263 (487)
..+++.=+|+.++++..+.++.+.+. +..|||.+..|.... .+.++. +.-.-+.+.+.+.+
T Consensus 3 ~~~vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivS 82 (201)
T PRK06015 3 LQPVIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVS 82 (201)
T ss_pred CCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEEC
Confidence 35677778888888888888877665 888888887764210 000111 11022344443332
Q ss_pred --------HHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCc
Q psy7343 264 --------SSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIP 334 (487)
Q Consensus 264 --------~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iP 334 (487)
+..++ .++|++- ...+..|+.. ..++|++.|-+..-.. +.| ..+++.++.-+ ++|
T Consensus 83 P~~~~~vi~~a~~-~~i~~iP------G~~TptEi~~-A~~~Ga~~vK~FPa~~-----~GG---~~yikal~~plp~~~ 146 (201)
T PRK06015 83 PGTTQELLAAAND-SDVPLLP------GAATPSEVMA-LREEGYTVLKFFPAEQ-----AGG---AAFLKALSSPLAGTF 146 (201)
T ss_pred CCCCHHHHHHHHH-cCCCEeC------CCCCHHHHHH-HHHCCCCEEEECCchh-----hCC---HHHHHHHHhhCCCCc
Confidence 22221 1333332 3345555554 4468999998832100 111 46688887766 799
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
++..|||. .+++.+.+ +.|+..+..|..+.
T Consensus 147 l~ptGGV~-~~n~~~~l-~ag~~~~~ggs~l~ 176 (201)
T PRK06015 147 FCPTGGIS-LKNARDYL-SLPNVVCVGGSWVA 176 (201)
T ss_pred EEecCCCC-HHHHHHHH-hCCCeEEEEchhhC
Confidence 99999996 47899999 56665555565444
No 342
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=95.52 E-value=0.35 Score=48.43 Aligned_cols=145 Identities=16% Similarity=0.270 Sum_probs=91.8
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-ec
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-RI 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R~ 280 (487)
..||.+.+. +.|.+...++.+ . |+ ..+-..+. .-.+..+.+...++++..+. .++.|-+-+ .+
T Consensus 69 ~VPV~lHLDH~~~~~~i~~ai~----~--------Gf-tSVMiD~S-~l~~eeNi~~t~~vv~~ah~-~gv~VEaElG~i 133 (276)
T cd00947 69 SVPVALHLDHGSSFELIKRAIR----A--------GF-SSVMIDGS-HLPFEENVAKTKEVVELAHA-YGVSVEAELGRI 133 (276)
T ss_pred CCCEEEECCCCCCHHHHHHHHH----h--------CC-CEEEeCCC-CCCHHHHHHHHHHHHHHHHH-cCCeEEEEEeee
Confidence 579999998 666665554432 2 33 22222221 11234566777777775554 466665532 22
Q ss_pred ccc----------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC---CCCHHHHHHHHhhCCCcEEEcCCCCCHH-H
Q psy7343 281 YQD----------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG---LASWEHITAVRKALTIPVIANGNIQCLA-D 346 (487)
Q Consensus 281 ~~d----------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g---~~~~~~i~~i~~~~~iPVi~nGgI~s~~-d 346 (487)
+.. ..+..+..+.++++|+|.+.|.-.|.-.. |.+ .-+++.++++.+.+++|++.-||=..++ +
T Consensus 134 ~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~--Y~~~~p~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~ 211 (276)
T cd00947 134 GGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGA--YKGGEPKLDFDRLKEIAERVNVPLVLHGGSGIPDEQ 211 (276)
T ss_pred cCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccc--cCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHH
Confidence 211 13578888888899999998732222221 433 3578999999999999999877766664 5
Q ss_pred HHHHHHhcCCcEEEecccc
Q psy7343 347 VEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 347 a~~~l~~~Gad~VmiGRa~ 365 (487)
+.+++ ..|+.-|=+++.+
T Consensus 212 ~~~ai-~~Gi~KiNi~T~l 229 (276)
T cd00947 212 IRKAI-KLGVCKININTDL 229 (276)
T ss_pred HHHHH-HcCCeEEEeChHH
Confidence 77777 7898888887753
No 343
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.51 E-value=0.083 Score=54.05 Aligned_cols=96 Identities=16% Similarity=0.199 Sum_probs=63.7
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCC--cEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC--QLLAVHGRTVDQRGMNTGLASWEHITAVRKALT 332 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~--d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~ 332 (487)
+++....+++.++ +..+++++-++.+. +..+.+..+.++|+ |.|.|..- . + . +..-.+.++++++..+
T Consensus 70 ~~e~~~~~~r~~~---~~~l~v~~~vg~~~-~~~~~~~~Lv~ag~~~d~i~iD~a-~---g-h-~~~~~e~I~~ir~~~p 139 (326)
T PRK05458 70 DPEARIPFIKDMH---EQGLIASISVGVKD-DEYDFVDQLAAEGLTPEYITIDIA-H---G-H-SDSVINMIQHIKKHLP 139 (326)
T ss_pred CHHHHHHHHHhcc---ccccEEEEEecCCH-HHHHHHHHHHhcCCCCCEEEEECC-C---C-c-hHHHHHHHHHHHhhCC
Confidence 5666666554332 23456776555433 34455666777754 99999221 1 0 0 1123478999999885
Q ss_pred -CcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 333 -IPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 333 -iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+||++ |+|.|.+++..+. +.|+|++.+|
T Consensus 140 ~~~vi~-g~V~t~e~a~~l~-~aGad~i~vg 168 (326)
T PRK05458 140 ETFVIA-GNVGTPEAVRELE-NAGADATKVG 168 (326)
T ss_pred CCeEEE-EecCCHHHHHHHH-HcCcCEEEEC
Confidence 77776 8899999999998 7999999877
No 344
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.51 E-value=0.22 Score=50.07 Aligned_cols=102 Identities=13% Similarity=0.171 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh---CC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA---LT 332 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~---~~ 332 (487)
.+.+..++..+.+..++||.+.. |-....+.++...++|.+.||+.|-. +.-.-+.+..+++.+. .+
T Consensus 59 ~~~~~~~~~~~a~~~~VPValHL----DH~~~~e~i~~ai~~GftSVMiDgS~------lp~eeNi~~T~~vv~~Ah~~g 128 (284)
T PRK12737 59 TDYIVAIAEVAARKYNIPLALHL----DHHEDLDDIKKKVRAGIRSVMIDGSH------LSFEENIAIVKEVVEFCHRYD 128 (284)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCeEEecCCC------CCHHHHHHHHHHHHHHHHHcC
Confidence 45567777777777899999998 55555667777888899999994431 1111233444444332 24
Q ss_pred CcEEE--------cCC---------CCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 333 IPVIA--------NGN---------IQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 333 iPVi~--------nGg---------I~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
+.|-+ .++ .+++++++++.++||+|...++=|-..
T Consensus 129 vsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~H 180 (284)
T PRK12737 129 ASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAH 180 (284)
T ss_pred CEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccc
Confidence 44321 112 568999999999999998776654433
No 345
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=95.51 E-value=0.15 Score=52.74 Aligned_cols=90 Identities=20% Similarity=0.387 Sum_probs=68.0
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcccc-------C-----CCC-----------------------CC
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTV-------D-----QRG-----------------------MN 315 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~-------~-----~~g-----------------------~~ 315 (487)
+.|.+..+-...|.....++.+..+++|+++|.+|-=+. . +.+ ..
T Consensus 117 ~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (344)
T cd02922 117 DQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFI 196 (344)
T ss_pred CCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhcc
Confidence 357777665555667789999999999999999863110 0 000 11
Q ss_pred CCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 316 TGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 316 ~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
.+...|+.++++++..++||+.- +|.+.+|++.+. +.|+|+|.+.
T Consensus 197 ~~~~~~~~i~~l~~~~~~PvivK-gv~~~~dA~~a~-~~G~d~I~vs 241 (344)
T cd02922 197 DPTLTWDDIKWLRKHTKLPIVLK-GVQTVEDAVLAA-EYGVDGIVLS 241 (344)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEE-cCCCHHHHHHHH-HcCCCEEEEE
Confidence 13357899999999999999985 789999999888 7999999875
No 346
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=95.50 E-value=0.22 Score=50.03 Aligned_cols=102 Identities=17% Similarity=0.190 Sum_probs=67.9
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh---C
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA---L 331 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~---~ 331 (487)
..+.+..+++.+.+..++||.+.. |-....+.++...+.|++.||+.|-. +.-.-+.+..+++.+. .
T Consensus 56 ~~~~~~~~~~~~a~~~~VPValHL----DHg~~~e~i~~ai~~GFtSVM~DgS~------lp~eeNi~~T~~vv~~Ah~~ 125 (282)
T TIGR01858 56 GTEYIVALCSAASTTYNMPLALHL----DHHESLDDIRQKVHAGVRSAMIDGSH------FPFAQNVKLVKEVVDFCHRQ 125 (282)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCEEeecCCC------CCHHHHHHHHHHHHHHHHHc
Confidence 356567777778778899999998 65555677778888999999994321 1111234444444332 3
Q ss_pred CCcEEE----cC----C---------CCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 332 TIPVIA----NG----N---------IQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 332 ~iPVi~----nG----g---------I~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
+++|-+ .| + .+++++++++.++||+|...++=|-.
T Consensus 126 gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~ 177 (282)
T TIGR01858 126 DCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTA 177 (282)
T ss_pred CCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCcc
Confidence 555432 11 1 57889999999999999877665433
No 347
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=95.44 E-value=0.41 Score=48.08 Aligned_cols=144 Identities=17% Similarity=0.274 Sum_probs=90.1
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-ec
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-RI 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R~ 280 (487)
..||.+.+. +.+.+...++ + +. |+ ..+-..+. .-.+..|.+...++++..+ ..+++|-+-+ .+
T Consensus 72 ~VPValHLDHg~~~e~i~~a---i-~~--------GF-tSVM~DgS-~lp~eeNi~~T~~vv~~Ah-~~gv~VEaElG~v 136 (282)
T TIGR01858 72 NMPLALHLDHHESLDDIRQK---V-HA--------GV-RSAMIDGS-HFPFAQNVKLVKEVVDFCH-RQDCSVEAELGRL 136 (282)
T ss_pred CCCEEEECCCCCCHHHHHHH---H-Hc--------CC-CEEeecCC-CCCHHHHHHHHHHHHHHHH-HcCCeEEEEEEec
Confidence 579999998 5565443332 2 22 33 22222221 1123456677777777554 3477766632 22
Q ss_pred cc---c---------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC--CCCHHHHHHHHhhCCCcEEEcCCCCCH-H
Q psy7343 281 YQ---D---------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG--LASWEHITAVRKALTIPVIANGNIQCL-A 345 (487)
Q Consensus 281 ~~---d---------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g--~~~~~~i~~i~~~~~iPVi~nGgI~s~-~ 345 (487)
+. + ..+..++.+.++++|+|.+.|.=.|.-+. |.+ .-+++.+++|++.+++|++.-|+=..+ +
T Consensus 137 gg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~--yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e 214 (282)
T TIGR01858 137 GGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGL--YKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDE 214 (282)
T ss_pred CCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccC--cCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHH
Confidence 21 1 13567888888999999998843333322 555 347899999999999999877665555 4
Q ss_pred HHHHHHHhcCCcEEEeccc
Q psy7343 346 DVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 346 da~~~l~~~Gad~VmiGRa 364 (487)
++.++. ..|+.-|=+++.
T Consensus 215 ~~~~ai-~~Gi~KiNi~T~ 232 (282)
T TIGR01858 215 DVRRTI-ELGICKVNVATE 232 (282)
T ss_pred HHHHHH-HcCCeEEEeCcH
Confidence 677777 788888887764
No 348
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=95.44 E-value=0.11 Score=53.08 Aligned_cols=97 Identities=10% Similarity=0.147 Sum_probs=64.1
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcC--CcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAG--CQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT 332 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G--~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~ 332 (487)
+++...+.++.++.. . +.+++-++...++ .+.+..+.++| +|.|.+.-- +. ++ ..-++.++++++...
T Consensus 67 ~~E~~~sfvrk~k~~-~--L~v~~SvG~t~e~-~~r~~~lv~a~~~~d~i~~D~a---hg--~s-~~~~~~i~~i~~~~p 136 (321)
T TIGR01306 67 DEESRIPFIKDMQER-G--LFASISVGVKACE-YEFVTQLAEEALTPEYITIDIA---HG--HS-NSVINMIKHIKTHLP 136 (321)
T ss_pred CHHHHHHHHHhcccc-c--cEEEEEcCCCHHH-HHHHHHHHhcCCCCCEEEEeCc---cC--ch-HHHHHHHHHHHHhCC
Confidence 556555555554322 2 3555544544433 34455566667 799988211 00 11 123588999999998
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
.|.+..|+|.|.++++.++ +.|||+|.+|
T Consensus 137 ~~~vi~GnV~t~e~a~~l~-~aGad~I~V~ 165 (321)
T TIGR01306 137 DSFVIAGNVGTPEAVRELE-NAGADATKVG 165 (321)
T ss_pred CCEEEEecCCCHHHHHHHH-HcCcCEEEEC
Confidence 8988889999999999999 7999999877
No 349
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=95.44 E-value=0.17 Score=54.24 Aligned_cols=102 Identities=13% Similarity=0.155 Sum_probs=73.9
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--C
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--T 332 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~ 332 (487)
+.+.+.++++..+ .++.-+.+-+ .+..| ++...++|++.|-|-.|.-.. -..+.+...++...+ +
T Consensus 144 ~~~~l~~l~~~a~-~lGl~~lvEv------h~~~E-l~~al~~~a~iiGiNnRdL~t-----~~vd~~~~~~l~~~ip~~ 210 (454)
T PRK09427 144 DDEQYRQLAAVAH-SLNMGVLTEV------SNEEE-LERAIALGAKVIGINNRNLRD-----LSIDLNRTRELAPLIPAD 210 (454)
T ss_pred CHHHHHHHHHHHH-HcCCcEEEEE------CCHHH-HHHHHhCCCCEEEEeCCCCcc-----ceECHHHHHHHHhhCCCC
Confidence 3556777776544 4577777765 23334 444556799999887674322 235667777777766 6
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+.+|+-+||.|++|+.++. . |+|+|.||.++|.+|+.
T Consensus 211 ~~~vseSGI~t~~d~~~~~-~-~~davLiG~~lm~~~d~ 247 (454)
T PRK09427 211 VIVISESGIYTHAQVRELS-P-FANGFLIGSSLMAEDDL 247 (454)
T ss_pred cEEEEeCCCCCHHHHHHHH-h-cCCEEEECHHHcCCCCH
Confidence 7788899999999999975 4 69999999999999874
No 350
>PRK14057 epimerase; Provisional
Probab=95.41 E-value=0.32 Score=47.92 Aligned_cols=147 Identities=12% Similarity=0.109 Sum_probs=86.5
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeec--CCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINI--GCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~--GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR 279 (487)
..++++.|...|...+.+-.+.+++. .|.+.+.. |+ +--.+.--++.+.. +++ ++|+-+-+
T Consensus 19 ~~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~---------FVPNitfGp~~i~~----i~~--~~p~DvHL- 82 (254)
T PRK14057 19 SYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQ---------FCPQFTVGPWAVGQ----LPQ--TFIKDVHL- 82 (254)
T ss_pred CCceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCc---------cCCccccCHHHHHH----hcc--CCCeeEEe-
Confidence 46888888888888888888877775 56554432 32 11101012343333 433 45555544
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccC----------C--------------------------------------
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVD----------Q-------------------------------------- 311 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~----------~-------------------------------------- 311 (487)
=+.+...+.+.+.++|+|.|++|.-+.. +
T Consensus 83 ---MV~~P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VL 159 (254)
T PRK14057 83 ---MVADQWTAAQACVKAGAHCITLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQ 159 (254)
T ss_pred ---eeCCHHHHHHHHHHhCCCEEEEeeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEE
Confidence 3346677777777777777777663200 0
Q ss_pred ----CCCCCCCCC----HHHHHHHHhhC-----CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 312 ----RGMNTGLAS----WEHITAVRKAL-----TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 312 ----~g~~~g~~~----~~~i~~i~~~~-----~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
.+++.|... ++.++++++.. ++.|-.-|||+ .+.+.++. +.|||.+.+|+++..+++
T Consensus 160 vMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~-~aGad~~V~GSalF~~~d 229 (254)
T PRK14057 160 LLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLT-QDQLPSLI-AQGIDRVVSGSALFRDDR 229 (254)
T ss_pred EEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHH-HCCCCEEEEChHhhCCCC
Confidence 112223221 23444444432 46688999996 56788888 799999999998765433
No 351
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=95.40 E-value=0.24 Score=48.81 Aligned_cols=102 Identities=16% Similarity=0.221 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHhh--hccCcEEEEe-ecccc--------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHH
Q psy7343 256 WPLLTNLVSSLRQ--AVQVPVSCKI-RIYQD--------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHI 324 (487)
Q Consensus 256 ~~~i~eiv~~v~~--~~~iPV~vKi-R~~~d--------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i 324 (487)
.+.+.++.+...+ ..++|+.+=. -.+.+ .+.....++...+.|+|.|-+ .|+| +.+.+
T Consensus 126 ~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~---------~ytg--~~e~F 194 (265)
T COG1830 126 REMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKT---------KYTG--DPESF 194 (265)
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEee---------cCCC--ChHHH
Confidence 4444444443322 3489988721 11212 223455567788999999877 1444 34889
Q ss_pred HHHHhhCCCcEEEcCCCCC--HHHHHHHHH---hcCCcEEEeccccccC
Q psy7343 325 TAVRKALTIPVIANGNIQC--LADVEACLA---QTGVAGVMTAEGNLYN 368 (487)
Q Consensus 325 ~~i~~~~~iPVi~nGgI~s--~~da~~~l~---~~Gad~VmiGRa~l~~ 368 (487)
+++.+.+.+||+.+||=.+ .+++.++.. +.|+.|+.+||=+...
T Consensus 195 ~~vv~~~~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~ 243 (265)
T COG1830 195 RRVVAACGVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQH 243 (265)
T ss_pred HHHHHhCCCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhcc
Confidence 9999999999999998876 334444432 4699999999965544
No 352
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.37 E-value=0.24 Score=49.72 Aligned_cols=99 Identities=16% Similarity=0.209 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh---hCC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK---ALT 332 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~---~~~ 332 (487)
.+.+..+++.+.+..++||.+.. |-....+.++.+.++|.+.||+.|-. +.-.-+.+..+++.+ ..+
T Consensus 59 ~~~~~~~~~~~A~~~~VPV~lHL----DHg~~~e~i~~Ai~~GftSVM~DgS~------l~~eeNi~~T~~vv~~Ah~~g 128 (284)
T PRK09195 59 TEYLLAIVSAAAKQYHHPLALHL----DHHEKFDDIAQKVRSGVRSVMIDGSH------LPFAQNISLVKEVVDFCHRFD 128 (284)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCEEEeCCCC------CCHHHHHHHHHHHHHHHHHcC
Confidence 45567777777778899999997 65555677788888999999994321 111123334444433 234
Q ss_pred CcEEE--------cCC---------CCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 333 IPVIA--------NGN---------IQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 333 iPVi~--------nGg---------I~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+.|-+ .++ .+++++++++.++||+|...++=|
T Consensus 129 v~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiG 177 (284)
T PRK09195 129 VSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIG 177 (284)
T ss_pred CEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccC
Confidence 44322 112 579999999999999998776544
No 353
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=95.37 E-value=0.58 Score=47.07 Aligned_cols=144 Identities=17% Similarity=0.257 Sum_probs=89.8
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-ec
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-RI 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R~ 280 (487)
..||.+.+. +.+.+...++. ...|+-| -..+. .-.+..|.+...++++..+. .++.|-+-+ ++
T Consensus 74 ~VPValHLDHg~~~e~i~~ai---~~GFtSV----------M~DgS-~lp~eeNi~~T~evv~~Ah~-~gv~VEaElG~i 138 (286)
T PRK12738 74 NMPLALHLDHHESLDDIRRKV---HAGVRSA----------MIDGS-HFPFAENVKLVKSVVDFCHS-QDCSVEAELGRL 138 (286)
T ss_pred CCCEEEECCCCCCHHHHHHHH---HcCCCeE----------eecCC-CCCHHHHHHHHHHHHHHHHH-cCCeEEEEEEee
Confidence 579999998 55655444333 2223322 22211 11124566777777775543 466665532 22
Q ss_pred cc---c---------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC--CCCHHHHHHHHhhCCCcEEEcCCCCCH-H
Q psy7343 281 YQ---D---------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG--LASWEHITAVRKALTIPVIANGNIQCL-A 345 (487)
Q Consensus 281 ~~---d---------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g--~~~~~~i~~i~~~~~iPVi~nGgI~s~-~ 345 (487)
++ + ..+.+++.+..+++|+|.+.|.-.|.-+. |.+ .-+++.+++|++.+++|++.-||=..+ +
T Consensus 139 gg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~--Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e 216 (286)
T PRK12738 139 GGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGL--YSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDE 216 (286)
T ss_pred CCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCC--CCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHH
Confidence 21 1 13678888888999999998843333322 544 347899999999999999876655444 5
Q ss_pred HHHHHHHhcCCcEEEeccc
Q psy7343 346 DVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 346 da~~~l~~~Gad~VmiGRa 364 (487)
++.++. +.|..-|=+++.
T Consensus 217 ~~~kai-~~GI~KiNi~T~ 234 (286)
T PRK12738 217 FVRRTI-ELGVTKVNVATE 234 (286)
T ss_pred HHHHHH-HcCCeEEEeCcH
Confidence 677777 788888877763
No 354
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=95.35 E-value=0.57 Score=47.08 Aligned_cols=144 Identities=19% Similarity=0.320 Sum_probs=89.3
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-ec
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-RI 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R~ 280 (487)
..||.+.+. +.+.+...++ +...|+- +-..+. .-.+..|.+...++++..+. .++.|-+-+ ++
T Consensus 74 ~VPValHLDH~~~~e~i~~a---i~~GftS----------VMiDgS-~lp~eeNi~~T~~vv~~Ah~-~gvsVEaElG~i 138 (284)
T PRK12737 74 NIPLALHLDHHEDLDDIKKK---VRAGIRS----------VMIDGS-HLSFEENIAIVKEVVEFCHR-YDASVEAELGRL 138 (284)
T ss_pred CCCEEEECCCCCCHHHHHHH---HHcCCCe----------EEecCC-CCCHHHHHHHHHHHHHHHHH-cCCEEEEEEeec
Confidence 569999987 5554433322 2222322 222221 11224566777777775543 466665532 22
Q ss_pred cc---c---------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC--CCHHHHHHHHhhCCCcEEEcCCCCCH-H
Q psy7343 281 YQ---D---------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL--ASWEHITAVRKALTIPVIANGNIQCL-A 345 (487)
Q Consensus 281 ~~---d---------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~--~~~~~i~~i~~~~~iPVi~nGgI~s~-~ 345 (487)
++ + ..+.+++.+.++++|+|.+.|.-.|.-+. |.+. -+++.+++|++.+++|++.-||=..+ +
T Consensus 139 gg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~--y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e 216 (284)
T PRK12737 139 GGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGL--YKGEPKLDFERLAEIREKVSIPLVLHGASGVPDE 216 (284)
T ss_pred cCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCccccc--cCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHH
Confidence 21 1 23668888888999999998833332222 5443 47899999999999999876665544 4
Q ss_pred HHHHHHHhcCCcEEEeccc
Q psy7343 346 DVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 346 da~~~l~~~Gad~VmiGRa 364 (487)
++.+++ ..|+.-|=|++.
T Consensus 217 ~~~kai-~~Gi~KiNi~T~ 234 (284)
T PRK12737 217 DVKKAI-SLGICKVNVATE 234 (284)
T ss_pred HHHHHH-HCCCeEEEeCcH
Confidence 677777 789988888875
No 355
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=95.35 E-value=0.14 Score=53.54 Aligned_cols=44 Identities=23% Similarity=0.482 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 317 GLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 317 g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+..+|+.++++++..++||+. .||.+.+|++.+. +.|+|+|.++
T Consensus 238 ~~~tW~~i~~lr~~~~~pviv-KgV~~~~dA~~a~-~~G~d~I~vs 281 (383)
T cd03332 238 PSLTWEDLAFLREWTDLPIVL-KGILHPDDARRAV-EAGVDGVVVS 281 (383)
T ss_pred CCCCHHHHHHHHHhcCCCEEE-ecCCCHHHHHHHH-HCCCCEEEEc
Confidence 345899999999999999998 5889999999999 7999999986
No 356
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.32 E-value=0.24 Score=49.76 Aligned_cols=100 Identities=20% Similarity=0.219 Sum_probs=66.7
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh---hC
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK---AL 331 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~---~~ 331 (487)
..+.+..+++.+.+..++||.+.. |-....+.++.+.++|++.||+.|-. +.-.-+.+..+++.+ ..
T Consensus 58 g~~~~~~~~~~~A~~~~vPV~lHL----DH~~~~e~i~~Ai~~GftSVM~DgS~------l~~eeNi~~T~~vve~Ah~~ 127 (283)
T PRK07998 58 GYDYIYEIVKRHADKMDVPVSLHL----DHGKTFEDVKQAVRAGFTSVMIDGAA------LPFEENIAFTKEAVDFAKSY 127 (283)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEC----cCCCCHHHHHHHHHcCCCEEEEeCCC------CCHHHHHHHHHHHHHHHHHc
Confidence 467778888888888899999998 55444555666678899999994321 111123344444433 34
Q ss_pred CCcEEE----cCC-----------CCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 332 TIPVIA----NGN-----------IQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 332 ~iPVi~----nGg-----------I~s~~da~~~l~~~Gad~VmiGRa 364 (487)
+++|-+ .|| .++++++.++.+++|+|...++=|
T Consensus 128 gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiG 175 (283)
T PRK07998 128 GVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIG 175 (283)
T ss_pred CCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhcc
Confidence 676621 111 479999999999999998776543
No 357
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.32 E-value=0.14 Score=49.28 Aligned_cols=151 Identities=13% Similarity=0.115 Sum_probs=89.4
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcce----eeccCc-----cccccCChHHHH------------
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMV----AKRGHY-----GAYLQDDWPLLT------------ 260 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i----~~~gr~-----G~~l~~d~~~i~------------ 260 (487)
..+++.=+|+.++++..+.++.+.+. ++.|||-+-.|... ..+..+ |+.-.-+.+.+.
T Consensus 14 ~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 14 AGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVS 93 (212)
T ss_pred HCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEEC
Confidence 45777778999999999999888776 89999887665310 000001 111111222222
Q ss_pred -----HHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCc
Q psy7343 261 -----NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIP 334 (487)
Q Consensus 261 -----eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iP 334 (487)
++++..++ .++|++ +...+..| +..+.+.|++.|-+..- +. . | ...+++.++.-+ ++|
T Consensus 94 P~~~~~vi~~a~~-~~i~~i------PG~~TptE-i~~a~~~Ga~~vKlFPa---~~--~-g--g~~~lk~l~~p~p~~~ 157 (212)
T PRK05718 94 PGLTPPLLKAAQE-GPIPLI------PGVSTPSE-LMLGMELGLRTFKFFPA---EA--S-G--GVKMLKALAGPFPDVR 157 (212)
T ss_pred CCCCHHHHHHHHH-cCCCEe------CCCCCHHH-HHHHHHCCCCEEEEccc---hh--c-c--CHHHHHHHhccCCCCe
Confidence 22322222 234433 12345566 55677899999988321 10 1 1 246677777766 799
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcccc
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf 372 (487)
++..|||.. +++.+++ ..|+ .+.+|.+.|.+....
T Consensus 158 ~~ptGGV~~-~ni~~~l-~ag~-v~~vggs~L~~~~~~ 192 (212)
T PRK05718 158 FCPTGGISP-ANYRDYL-ALPN-VLCIGGSWMVPKDAI 192 (212)
T ss_pred EEEeCCCCH-HHHHHHH-hCCC-EEEEEChHhCCcchh
Confidence 999999964 8899999 5674 444555555554443
No 358
>PRK06852 aldolase; Validated
Probab=95.32 E-value=0.14 Score=51.76 Aligned_cols=105 Identities=13% Similarity=0.076 Sum_probs=66.7
Q ss_pred HHHHHHHHHhhhccCcEEEEe-eccc------ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh
Q psy7343 258 LLTNLVSSLRQAVQVPVSCKI-RIYQ------DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA 330 (487)
Q Consensus 258 ~i~eiv~~v~~~~~iPV~vKi-R~~~------d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~ 330 (487)
.+.+++++.. ..++|+.+=+ ..|. +.+.....++...+.|+|.|-+ .-+..+ +..+.+.++++.+.
T Consensus 155 ~l~~v~~ea~-~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv-~y~~~~-----~~g~~e~f~~vv~~ 227 (304)
T PRK06852 155 EAAQIIYEAH-KHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKV-NYPKKE-----GANPAELFKEAVLA 227 (304)
T ss_pred HHHHHHHHHH-HhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEe-cCCCcC-----CCCCHHHHHHHHHh
Confidence 3444444433 4589988611 1121 2234567778889999999988 221110 11356788888888
Q ss_pred C-CCcEEEcCCCC-CHHHHHHH----HHhcCCcEEEeccccccCc
Q psy7343 331 L-TIPVIANGNIQ-CLADVEAC----LAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 331 ~-~iPVi~nGgI~-s~~da~~~----l~~~Gad~VmiGRa~l~~P 369 (487)
. .+||+..||=. +.+++.++ ++..|+.||.+||=....|
T Consensus 228 ~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~ 272 (304)
T PRK06852 228 AGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKP 272 (304)
T ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCC
Confidence 8 99988888776 44445444 4237999999999665554
No 359
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=95.31 E-value=0.25 Score=51.24 Aligned_cols=143 Identities=15% Similarity=0.114 Sum_probs=90.5
Q ss_pred CCCeeeeeccCCHHHHHHHHH-hhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEEee
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~-~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR 279 (487)
..|+...+...+++.+.+.++ ..++.|..+.+..|-+... .+. ..+++.-.+.++++++.++ +.+.+-..
T Consensus 112 ~i~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~--~~~-----~~~~~~D~~~i~avr~~~g~~~~l~vDaN 184 (352)
T cd03325 112 RVRVYSWIGGDRPSDVAEAARARREAGFTAVKMNATEELQW--IDT-----SKKVDAAVERVAALREAVGPDIDIGVDFH 184 (352)
T ss_pred eeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCccc--CCC-----HHHHHHHHHHHHHHHHhhCCCCEEEEECC
Confidence 345555454557776655444 4444467666665531100 000 0134555666777777663 34444332
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
-+|+..+..++++.+++.|+++|-= + . ...+++..+++++...+||.+.=.+.+..++.++++...+|.+
T Consensus 185 ~~~~~~~A~~~~~~l~~~~i~~iEe--------P-~-~~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v 254 (352)
T cd03325 185 GRVSKPMAKDLAKELEPYRLLFIEE--------P-V-LPENVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDII 254 (352)
T ss_pred CCCCHHHHHHHHHhccccCCcEEEC--------C-C-CccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEE
Confidence 3466667888888888888777731 1 1 2236888999999999999997788999999999976678877
Q ss_pred Eec
Q psy7343 360 MTA 362 (487)
Q Consensus 360 miG 362 (487)
++-
T Consensus 255 ~~d 257 (352)
T cd03325 255 QPD 257 (352)
T ss_pred ecC
Confidence 653
No 360
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=95.26 E-value=0.19 Score=52.21 Aligned_cols=116 Identities=18% Similarity=0.229 Sum_probs=78.2
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCC-CCCCCHHHHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN-TGLASWEHITAV 327 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~-~g~~~~~~i~~i 327 (487)
|+....+.+++.++- .++.||++|--...+.+++..+++.+.+.|..-|++-=|.....+.. ....|+..+..+
T Consensus 208 ~s~~~~n~~LL~~~a-----~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~l 282 (360)
T PRK12595 208 GARNMQNFELLKAAG-----RVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPIL 282 (360)
T ss_pred CcccccCHHHHHHHH-----ccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHH
Confidence 444556776665533 35899999975545677888889999999997666633333222111 233588999999
Q ss_pred HhhCCCcEEEcCCCCCH----H--HHHHHHHhcCCcEEEeccccccCcccc
Q psy7343 328 RKALTIPVIANGNIQCL----A--DVEACLAQTGVAGVMTAEGNLYNPALF 372 (487)
Q Consensus 328 ~~~~~iPVi~nGgI~s~----~--da~~~l~~~Gad~VmiGRa~l~~P~lf 372 (487)
++..++||+++-+-... . -+...+ ..||||++|=+-+ ||..-
T Consensus 283 k~~~~~PV~~d~~Hs~G~r~~~~~~a~aAv-a~GAdg~~iE~H~--dp~~a 330 (360)
T PRK12595 283 KQETHLPVMVDVTHSTGRRDLLLPTAKAAL-AIGADGVMAEVHP--DPAVA 330 (360)
T ss_pred HHHhCCCEEEeCCCCCcchhhHHHHHHHHH-HcCCCeEEEEecC--CCCCC
Confidence 99899999995444432 1 223334 5899999999877 77663
No 361
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=95.24 E-value=0.036 Score=56.46 Aligned_cols=113 Identities=18% Similarity=0.118 Sum_probs=66.5
Q ss_pred hcChhHHHHHHhc--CCCCCCeeeeeccC-CHHHHHHHHHhhCCc-CcEEE-ee-----------cCCCcceeeccCccc
Q psy7343 187 IADKKLRQEILMS--TPEDRPLIIQFCGN-DSKNLTEAAKLAEPH-CDGID-IN-----------IGCPQMVAKRGHYGA 250 (487)
Q Consensus 187 l~~~~~~~~~l~~--~~~~~Pv~Vqi~g~-d~~~~~~aa~~~~~~-~d~Id-iN-----------~GcP~~i~~~gr~G~ 250 (487)
-.+++...++++. .....||.|||..+ +...+++++..+.+. .++|. +| -+-|.....++..|-
T Consensus 139 g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGl 218 (310)
T PRK02506 139 AYDFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGI 218 (310)
T ss_pred ccCHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcC
Confidence 3456666666652 23468999999843 555666666555443 44432 23 121211001111111
Q ss_pred cccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEE
Q psy7343 251 YLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304 (487)
Q Consensus 251 ~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V 304 (487)
....-.....+.+..+.+.+ ++||++.+ .+.+.+|+++.+ .+||+.|++
T Consensus 219 SG~~i~p~al~~v~~~~~~~~~~ipIig~G----GI~s~~da~e~i-~aGA~~Vqv 269 (310)
T PRK02506 219 GGDYIKPTALANVRAFYQRLNPSIQIIGTG----GVKTGRDAFEHI-LCGASMVQV 269 (310)
T ss_pred CchhccHHHHHHHHHHHHhcCCCCCEEEEC----CCCCHHHHHHHH-HcCCCHHhh
Confidence 22222344455666676666 69999997 778899998888 689999998
No 362
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=95.24 E-value=0.4 Score=48.28 Aligned_cols=144 Identities=17% Similarity=0.289 Sum_probs=90.1
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee-c
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR-I 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR-~ 280 (487)
..||.+.+. +.|.+...++.+ . |+ ..+-..+. .-.+..|.+...++++..+ ..+++|-+-+- +
T Consensus 77 ~VPV~lHLDHg~~~e~i~~ai~----~--------Gf-tSVMiDgS-~lp~eeNi~~T~~vv~~Ah-~~gv~VEaElG~v 141 (288)
T TIGR00167 77 GVPVALHLDHGASEEDCAQAVK----A--------GF-SSVMIDGS-HEPFEENIELTKKVVERAH-KMGVSVEAELGTL 141 (288)
T ss_pred CCcEEEECCCCCCHHHHHHHHH----c--------CC-CEEEecCC-CCCHHHHHHHHHHHHHHHH-HcCCEEEEEEeec
Confidence 579999998 556554444332 2 33 22222221 1122456667777776544 34676666422 2
Q ss_pred cc--c----------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC--C-CCHHHHHHHHhhCCCcEEEcCCCCCH-
Q psy7343 281 YQ--D----------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG--L-ASWEHITAVRKALTIPVIANGNIQCL- 344 (487)
Q Consensus 281 ~~--d----------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g--~-~~~~~i~~i~~~~~iPVi~nGgI~s~- 344 (487)
+. | ..+..+..+.++++|+|.+.|.-.|.-.. |.+ . -+++.+++|++.+++|++.-||=..+
T Consensus 142 gg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~--y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~ 219 (288)
T TIGR00167 142 GGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGV--YKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPD 219 (288)
T ss_pred cCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCccccc--cCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCH
Confidence 21 1 12567778888899999998843333222 433 2 47899999999999999987777666
Q ss_pred HHHHHHHHhcCCcEEEeccc
Q psy7343 345 ADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 345 ~da~~~l~~~Gad~VmiGRa 364 (487)
+++.+++ ..|+.-|=+++.
T Consensus 220 e~~~~ai-~~Gi~KiNi~T~ 238 (288)
T TIGR00167 220 EEIKKAI-SLGVVKVNIDTE 238 (288)
T ss_pred HHHHHHH-HcCCeEEEcChH
Confidence 4677788 688888877764
No 363
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.20 E-value=0.19 Score=52.88 Aligned_cols=70 Identities=19% Similarity=0.268 Sum_probs=54.4
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
+..+.++.+.++|+|.|.|..- . + . +....+.++++++.+ +++|++ |+|.|.++++.++ +.|||+|.+|=
T Consensus 153 ~~~~~v~~lv~aGvDvI~iD~a-~---g-~-~~~~~~~v~~ik~~~p~~~vi~-g~V~T~e~a~~l~-~aGaD~I~vG~ 223 (404)
T PRK06843 153 DTIERVEELVKAHVDILVIDSA-H---G-H-STRIIELVKKIKTKYPNLDLIA-GNIVTKEAALDLI-SVGADCLKVGI 223 (404)
T ss_pred HHHHHHHHHHhcCCCEEEEECC-C---C-C-ChhHHHHHHHHHhhCCCCcEEE-EecCCHHHHHHHH-HcCCCEEEECC
Confidence 3567888899999999998322 1 0 1 223458899999887 677766 8999999999999 78999998873
No 364
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.19 E-value=0.21 Score=50.05 Aligned_cols=94 Identities=13% Similarity=0.148 Sum_probs=58.2
Q ss_pred HHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCH-HHHHHHHhh---CCC
Q psy7343 259 LTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW-EHITAVRKA---LTI 333 (487)
Q Consensus 259 i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~-~~i~~i~~~---~~i 333 (487)
+.+.++.+++.. ..+|.+-. ++..++ ..+.++|+|.|++..- + +.+. +.+..+++. -++
T Consensus 169 i~~av~~~r~~~~~~kIeVEv------~~leea-~~a~~agaDiI~LDn~--------~-~e~l~~~v~~l~~~~~~~~~ 232 (278)
T PRK08385 169 LEEAIRRAKEFSVYKVVEVEV------ESLEDA-LKAAKAGADIIMLDNM--------T-PEEIREVIEALKREGLRERV 232 (278)
T ss_pred HHHHHHHHHHhCCCCcEEEEe------CCHHHH-HHHHHcCcCEEEECCC--------C-HHHHHHHHHHHHhcCcCCCE
Confidence 445555565543 34555544 344444 4455799999999221 1 1111 233333332 257
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
.+.++||| +.+.+.++. .+|+|.+.+|.-...-|+
T Consensus 233 ~leaSGGI-~~~ni~~yA-~tGvD~Is~galt~sa~~ 267 (278)
T PRK08385 233 KIEVSGGI-TPENIEEYA-KLDVDVISLGALTHSVRN 267 (278)
T ss_pred EEEEECCC-CHHHHHHHH-HcCCCEEEeChhhcCCCc
Confidence 79999999 789999988 799999999975553343
No 365
>PRK14017 galactonate dehydratase; Provisional
Probab=95.19 E-value=0.31 Score=51.05 Aligned_cols=142 Identities=14% Similarity=0.094 Sum_probs=90.2
Q ss_pred CCCeeeeeccCCHHHHHHHHH-hhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEEee
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIR 279 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~-~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR 279 (487)
..|+...+...+++++.+.++ ..++.|..+-+..|-+. +..++ ..+++.-.+.++++++.++ +.+.+-..
T Consensus 113 ~i~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~-----~~~~~--~~~~~~d~~~i~avr~~~g~~~~l~vDaN 185 (382)
T PRK14017 113 RIRVYSWIGGDRPADVAEAARARVERGFTAVKMNGTEEL-----QYIDS--PRKVDAAVARVAAVREAVGPEIGIGVDFH 185 (382)
T ss_pred eeeEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCc-----ccccc--HHHHHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 346665555567777755444 44444665555432100 00000 1234555667777887763 44444332
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 280 IYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 280 ~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
-+|+..+..++++.+++.|+..|-= + . ...+++..+++++...+||.+.=.+.+..++.++++...+|.+
T Consensus 186 ~~w~~~~A~~~~~~l~~~~~~~iEe--------P-~-~~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v 255 (382)
T PRK14017 186 GRVHKPMAKVLAKELEPYRPMFIEE--------P-V-LPENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDII 255 (382)
T ss_pred CCCCHHHHHHHHHhhcccCCCeEEC--------C-C-CcCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeE
Confidence 3466667888888888888776631 1 1 2346788999999999999998899999999999976667777
Q ss_pred Ee
Q psy7343 360 MT 361 (487)
Q Consensus 360 mi 361 (487)
.+
T Consensus 256 ~~ 257 (382)
T PRK14017 256 QP 257 (382)
T ss_pred ec
Confidence 64
No 366
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=95.18 E-value=0.47 Score=47.18 Aligned_cols=150 Identities=19% Similarity=0.295 Sum_probs=82.8
Q ss_pred CCCchHHHHHHHHhCCccceeccccchhhhc--Ch--hHHHHHHh-----cCCCCC-Ceeeeec-c---CCHHHH-HHHH
Q psy7343 158 DASELPWRLLSRRYGSHLCYTPMVSAHQFIA--DK--KLRQEILM-----STPEDR-PLIIQFC-G---NDSKNL-TEAA 222 (487)
Q Consensus 158 ~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~--~~--~~~~~~l~-----~~~~~~-Pv~Vqi~-g---~d~~~~-~~aa 222 (487)
.+-|....++..+.|.+.+.+.--.+...+- |. --..+++. ....+. +|++-+- + .++++. ..+.
T Consensus 21 tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~a~ 100 (264)
T PRK00311 21 TAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRNAG 100 (264)
T ss_pred eCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHHHH
Confidence 3456666677888888776653111111111 11 01122221 122234 4666663 3 355554 4556
Q ss_pred HhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeec--------------ccc---c
Q psy7343 223 KLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI--------------YQD---V 284 (487)
Q Consensus 223 ~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~--------------~~d---~ 284 (487)
+.++++ +++|.|- |. +...+.+++++++ +|||..-+-+ +.+ .
T Consensus 101 r~~~~aGa~aVkiE----------dg---------~~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i~grt~~~a 160 (264)
T PRK00311 101 RLMKEAGAHAVKLE----------GG---------EEVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKVQGRDEEAA 160 (264)
T ss_pred HHHHHhCCeEEEEc----------Cc---------HHHHHHHHHHHHC-CCCEeeeecccceeecccCCeeeecCCHHHH
Confidence 677756 4444332 21 2344555556544 8998733222 111 2
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcC
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANG 339 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nG 339 (487)
++..+-++.++++||+.|.+- +.+ -+.++++.+.+++|+|+-|
T Consensus 161 ~~~i~ra~a~~eAGA~~i~lE-----------~v~-~~~~~~i~~~l~iP~igiG 203 (264)
T PRK00311 161 EKLLEDAKALEEAGAFALVLE-----------CVP-AELAKEITEALSIPTIGIG 203 (264)
T ss_pred HHHHHHHHHHHHCCCCEEEEc-----------CCC-HHHHHHHHHhCCCCEEEec
Confidence 356777889999999999882 122 2788999999999999765
No 367
>KOG0623|consensus
Probab=95.16 E-value=0.055 Score=54.50 Aligned_cols=92 Identities=22% Similarity=0.299 Sum_probs=66.9
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
...++.+++|+.|+-.|.+..-.... ....-+.++++.++..++||||++.|--++++.++.++++.||+..-+ |
T Consensus 442 gv~ELtrAcEalGAGEiLLNCiD~DG---sn~GyDieLv~lvkdsV~IPVIASSGAG~P~HFeEvF~kT~adAaLaA-G- 516 (541)
T KOG0623|consen 442 GVFELTRACEALGAGEILLNCIDCDG---SNKGYDIELVKLVKDSVGIPVIASSGAGTPDHFEEVFEKTNADAALAA-G- 516 (541)
T ss_pred chhhHHHHHHHhCcchheeeeeccCC---CCCCcchhHHHHhhcccCCceEecCCCCCcHHHHHHHHhcCchhhhhc-c-
Confidence 46789999999999998873222211 222357899999999999999999999999999999999999875432 2
Q ss_pred ccCcccccCCCCCcHHHHHHHHH
Q psy7343 366 LYNPALFTGQTRPAWELASEYLD 388 (487)
Q Consensus 366 l~~P~lf~~~~~~~~~~~~~~l~ 388 (487)
+|... ..+.+.+++|+.
T Consensus 517 -----iFHR~-e~~i~dVKEyL~ 533 (541)
T KOG0623|consen 517 -----IFHRK-EVPIQDVKEYLQ 533 (541)
T ss_pred -----ceecC-ccchHHHHHHHH
Confidence 44322 223455666654
No 368
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=95.14 E-value=0.34 Score=48.76 Aligned_cols=102 Identities=17% Similarity=0.194 Sum_probs=67.1
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh---C
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA---L 331 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~---~ 331 (487)
..+.+..+++.+.+..++||.+.. |-....+.++...++|.+.||+.|-. +.-.-+.+..+++.+. .
T Consensus 58 ~~~~~~~~~~~~a~~~~VPValHL----DHg~~~e~i~~ai~~GFtSVM~DgS~------lp~eeNi~~T~evv~~Ah~~ 127 (286)
T PRK12738 58 ALEEIYALCSAYSTTYNMPLALHL----DHHESLDDIRRKVHAGVRSAMIDGSH------FPFAENVKLVKSVVDFCHSQ 127 (286)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCeEeecCCC------CCHHHHHHHHHHHHHHHHHc
Confidence 356667778888888899999998 65555667777778999999994321 1111233444444332 2
Q ss_pred CCcEEE----cC----C---------CCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 332 TIPVIA----NG----N---------IQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 332 ~iPVi~----nG----g---------I~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
++.|-+ .| + .+++++++++.++||+|...++=|-.
T Consensus 128 gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~ 179 (286)
T PRK12738 128 DCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTA 179 (286)
T ss_pred CCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcc
Confidence 444321 11 1 56899999999999999877665433
No 369
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=95.11 E-value=0.095 Score=54.36 Aligned_cols=114 Identities=19% Similarity=0.255 Sum_probs=72.4
Q ss_pred hhcChhHHHHHHh----cCCCCCCeeeeec-------cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCcccccc
Q psy7343 186 FIADKKLRQEILM----STPEDRPLIIQFC-------GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 253 (487)
Q Consensus 186 Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~-------g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~ 253 (487)
+.+......++++ ....+.+|.++|. +.+.++..++++.+++. .|.|++..|.....+... ...
T Consensus 183 lenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~--~~~-- 258 (353)
T cd02930 183 FENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTI--ATS-- 258 (353)
T ss_pred HHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccc--ccc--
Confidence 4444444445553 3344566776664 24677888999999887 899998665311111100 000
Q ss_pred CChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
.......+..+.+++.+++||++.+ ++.+..++.+.+++.++|.|++ ||.
T Consensus 259 ~~~~~~~~~~~~ik~~v~iPVi~~G----~i~~~~~a~~~i~~g~~D~V~~-gR~ 308 (353)
T cd02930 259 VPRGAFAWATAKLKRAVDIPVIASN----RINTPEVAERLLADGDADMVSM-ARP 308 (353)
T ss_pred CCchhhHHHHHHHHHhCCCCEEEcC----CCCCHHHHHHHHHCCCCChhHh-hHH
Confidence 0111223455667888899999997 5667888888888888999999 885
No 370
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.08 E-value=0.063 Score=55.68 Aligned_cols=108 Identities=16% Similarity=0.228 Sum_probs=66.9
Q ss_pred hhcChhHHHHHHh----cCC----CCCCeeeeecc-------CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCcc
Q psy7343 186 FIADKKLRQEILM----STP----EDRPLIIQFCG-------NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYG 249 (487)
Q Consensus 186 Ll~~~~~~~~~l~----~~~----~~~Pv~Vqi~g-------~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G 249 (487)
+.+......++++ ... .+.+|.+++-. .+.++..++++.+++. +|.|++..|..........
T Consensus 190 lenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~-- 267 (353)
T cd04735 190 LENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGR-- 267 (353)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCC--
Confidence 4444444555553 222 34566666542 3467888899988887 8999998775322111111
Q ss_pred ccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 250 AYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 250 ~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
...++.+.. +++.+ ++||++++ ++.+..++.+.+++ |+|.|++ ||.
T Consensus 268 ---~~~~~~~~~----ik~~~~~~iPVi~~G----gi~t~e~ae~~l~~-gaD~V~~-gR~ 315 (353)
T cd04735 268 ---DDNQTIMEL----VKERIAGRLPLIAVG----SINTPDDALEALET-GADLVAI-GRG 315 (353)
T ss_pred ---cchHHHHHH----HHHHhCCCCCEEEEC----CCCCHHHHHHHHHc-CCChHHH-hHH
Confidence 112333333 44444 78999998 55577777777776 9999999 884
No 371
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=95.07 E-value=1.1 Score=43.70 Aligned_cols=136 Identities=10% Similarity=0.067 Sum_probs=80.3
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccC--cEEEEeec
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQV--PVSCKIRI 280 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~i--PV~vKiR~ 280 (487)
+.|+-|-+.-.+|+.+.+... ++ |+ ..++.|-.. ...+.++++.+++. +. ...+-+
T Consensus 68 ~~~~DvHLMv~~P~~~i~~~~---~a--------Ga-d~It~H~Ea-------~~~~~~~l~~Ik~~-g~~~kaGlal-- 125 (228)
T PRK08091 68 HCFKDVHLMVRDQFEVAKACV---AA--------GA-DIVTLQVEQ-------THDLALTIEWLAKQ-KTTVLIGLCL-- 125 (228)
T ss_pred CCCEEEEeccCCHHHHHHHHH---Hh--------CC-CEEEEcccC-------cccHHHHHHHHHHC-CCCceEEEEE--
Confidence 578888888888988765332 22 32 344444431 11244566666654 55 444444
Q ss_pred ccccccHHHH-HHHHHHcCCcEEEEEccccCCCCCCCCCC----CHHHHHHHHhh-----CCCcEEEcCCCCCHHHHHHH
Q psy7343 281 YQDVNKTVEY-ARMLERAGCQLLAVHGRTVDQRGMNTGLA----SWEHITAVRKA-----LTIPVIANGNIQCLADVEAC 350 (487)
Q Consensus 281 ~~d~~~~~e~-a~~le~~G~d~I~VhgRt~~~~g~~~g~~----~~~~i~~i~~~-----~~iPVi~nGgI~s~~da~~~ 350 (487)
+..+..+. ...+.. +|.|+|-.-. +++.|.. .++.++++++. .++.|-.-|||+ .+.+.++
T Consensus 126 --nP~Tp~~~i~~~l~~--vD~VLiMtV~----PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l 196 (228)
T PRK08091 126 --CPETPISLLEPYLDQ--IDLIQILTLD----PRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYL 196 (228)
T ss_pred --CCCCCHHHHHHHHhh--cCEEEEEEEC----CCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHH
Confidence 33333333 334443 8988873221 1233433 23556665543 246688899997 6788888
Q ss_pred HHhcCCcEEEeccccccCcc
Q psy7343 351 LAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 351 l~~~Gad~VmiGRa~l~~P~ 370 (487)
. +.|||.+.+|+++..+++
T Consensus 197 ~-~aGaD~~V~GSalF~~~d 215 (228)
T PRK08091 197 K-QHQIDWVVSGSALFSQGE 215 (228)
T ss_pred H-HCCCCEEEEChhhhCCCC
Confidence 7 799999999998765543
No 372
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=95.07 E-value=0.35 Score=48.48 Aligned_cols=121 Identities=12% Similarity=0.050 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHH
Q psy7343 213 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYAR 292 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~ 292 (487)
-|.+.+.+.++.+.+. |+ ..+..-|.+|.+..-..+.-.++++.+.+..+ +|++.+- ..+..+..+.++
T Consensus 17 iD~~~~~~li~~l~~~--------Gv-~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~-~vi~gvg-~~~~~~ai~~a~ 85 (279)
T cd00953 17 IDKEKFKKHCENLISK--------GI-DYVFVAGTTGLGPSLSFQEKLELLKAYSDITD-KVIFQVG-SLNLEESIELAR 85 (279)
T ss_pred cCHHHHHHHHHHHHHc--------CC-cEEEEcccCCCcccCCHHHHHHHHHHHHHHcC-CEEEEeC-cCCHHHHHHHHH
Confidence 3777888888776665 54 45555666676654456666677776666654 4655541 124567889999
Q ss_pred HHHHcCCcEEEEEccccCCCCCCCCC----CCHHHHHHHHhhCCCcEE-E-----cCCCCCHHHHHHHHH
Q psy7343 293 MLERAGCQLLAVHGRTVDQRGMNTGL----ASWEHITAVRKALTIPVI-A-----NGNIQCLADVEACLA 352 (487)
Q Consensus 293 ~le~~G~d~I~VhgRt~~~~g~~~g~----~~~~~i~~i~~~~~iPVi-~-----nGgI~s~~da~~~l~ 352 (487)
.+++.|+|++++..-. |... ...++++.+.+ ++||+ + +|--.+++.+.++.+
T Consensus 86 ~a~~~Gad~v~v~~P~------y~~~~~~~~i~~yf~~v~~--~lpv~iYn~P~~tg~~l~~~~l~~L~~ 147 (279)
T cd00953 86 AAKSFGIYAIASLPPY------YFPGIPEEWLIKYFTDISS--PYPTFIYNYPKATGYDINARMAKEIKK 147 (279)
T ss_pred HHHHcCCCEEEEeCCc------CCCCCCHHHHHHHHHHHHh--cCCEEEEeCccccCCCCCHHHHHHHHh
Confidence 9999999999994321 2221 22366777777 78876 3 355567888888874
No 373
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=95.04 E-value=0.42 Score=48.04 Aligned_cols=100 Identities=18% Similarity=0.226 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh---CC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA---LT 332 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~---~~ 332 (487)
.+.+..+++.+.+..++||.+.. |-....+.++.+.++|.+.||+.|-. +.-.-+.+..+++.+. .+
T Consensus 59 ~~~~~~~~~~~A~~~~VPValHL----DH~~~~e~i~~ai~~GftSVM~DgS~------lp~eeNi~~T~~vv~~Ah~~g 128 (284)
T PRK12857 59 IEYISAMVRTAAEKASVPVALHL----DHGTDFEQVMKCIRNGFTSVMIDGSK------LPLEENIALTKKVVEIAHAVG 128 (284)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCeEEEeCCC------CCHHHHHHHHHHHHHHHHHcC
Confidence 45566777777777899999998 55445566677777899999995431 1111233444444332 34
Q ss_pred CcEEE----cC----C---------CCCHHHHHHHHHhcCCcEEEecccc
Q psy7343 333 IPVIA----NG----N---------IQCLADVEACLAQTGVAGVMTAEGN 365 (487)
Q Consensus 333 iPVi~----nG----g---------I~s~~da~~~l~~~Gad~VmiGRa~ 365 (487)
+.|-+ .| + .++++++.++.+++|+|...++=|-
T Consensus 129 vsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt 178 (284)
T PRK12857 129 VSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGT 178 (284)
T ss_pred CEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCc
Confidence 44321 11 2 5689999999999999988766543
No 374
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.03 E-value=0.21 Score=54.37 Aligned_cols=75 Identities=21% Similarity=0.411 Sum_probs=57.0
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEec--
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTA-- 362 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG-- 362 (487)
+..+-++.|.++|+|.|.+.. +.. . ....|+.++++++.. +.+|++ |+|.|.++++.++ +.|||+|.+|
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD~-~~g----~-~~~~~~~i~~ik~~~p~~~vi~-g~v~t~e~a~~a~-~aGaD~i~vg~g 319 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLDS-SQG----D-SIYQLEMIKYIKKTYPELDVIG-GNVVTMYQAQNLI-QAGVDGLRVGMG 319 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEeC-CCC----C-cHHHHHHHHHHHHhCCCCcEEE-ecCCCHHHHHHHH-HcCcCEEEECCC
Confidence 557888889999999999932 110 1 112469999999987 577776 8999999999999 7999999775
Q ss_pred cccccC
Q psy7343 363 EGNLYN 368 (487)
Q Consensus 363 Ra~l~~ 368 (487)
.|....
T Consensus 320 ~G~~~~ 325 (505)
T PLN02274 320 SGSICT 325 (505)
T ss_pred CCcccc
Confidence 554433
No 375
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=95.03 E-value=0.44 Score=45.10 Aligned_cols=129 Identities=18% Similarity=0.219 Sum_probs=72.0
Q ss_pred eeeccCCHHHHHHHHHhhCCc-CcEEEee-cCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccc
Q psy7343 208 IQFCGNDSKNLTEAAKLAEPH-CDGIDIN-IGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN 285 (487)
Q Consensus 208 Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN-~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~ 285 (487)
+.+...|++.+.+.++.+.+. +|.|++- +.+|.- .+.....++++++++..+.|+.+-+ -..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~------------~~~~~~~~~v~~i~~~~~~~v~v~l----m~~ 66 (210)
T TIGR01163 3 PSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFV------------PNLTFGPPVLEALRKYTDLPIDVHL----MVE 66 (210)
T ss_pred chhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC------------CCcccCHHHHHHHHhcCCCcEEEEe----eeC
Confidence 344456888888888888776 8888885 222210 0111223445556655566754322 112
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCC-HHHHHHHHHhcCCcEEEecc
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQC-LADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s-~~da~~~l~~~Gad~VmiGR 363 (487)
+..++++.+.+.|+|+|.+|+.... .....++.+++ .++.++..-...+ .+.++++. .++|.+.++.
T Consensus 67 ~~~~~~~~~~~~gadgv~vh~~~~~--------~~~~~~~~~~~-~g~~~~~~~~~~t~~e~~~~~~--~~~d~i~~~~ 134 (210)
T TIGR01163 67 NPDRYIEDFAEAGADIITVHPEASE--------HIHRLLQLIKD-LGAKAGIVLNPATPLEFLEYVL--PDVDLVLLMS 134 (210)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCch--------hHHHHHHHHHH-cCCcEEEEECCCCCHHHHHHHH--hhCCEEEEEE
Confidence 4567788888999999999875211 11233444443 3444333223334 34444443 4689988754
No 376
>PLN02417 dihydrodipicolinate synthase
Probab=95.00 E-value=0.22 Score=49.96 Aligned_cols=124 Identities=10% Similarity=0.040 Sum_probs=76.4
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+...|.+|.+..-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.+
T Consensus 20 D~~~~~~~i~~l~~~--------Gv-~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~-~~t~~~i~~a 89 (280)
T PLN02417 20 DLEAYDSLVNMQIEN--------GA-EGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGS-NSTREAIHAT 89 (280)
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCC-ccHHHHHHHH
Confidence 667777777766555 55 4555666667655334555566666655554 4788887621 1455788889
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEE-E-----cCCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI-A-----NGNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi-~-----nGgI~s~~da~~~l~ 352 (487)
+..++.|+|++++..-.. .. .+...-.++++.+.+.. ||+ + .|--.+++.+.++.+
T Consensus 90 ~~a~~~Gadav~~~~P~y-~~--~~~~~i~~~f~~va~~~--pi~lYn~P~~tg~~l~~~~l~~l~~ 151 (280)
T PLN02417 90 EQGFAVGMHAALHINPYY-GK--TSQEGLIKHFETVLDMG--PTIIYNVPGRTGQDIPPEVIFKIAQ 151 (280)
T ss_pred HHHHHcCCCEEEEcCCcc-CC--CCHHHHHHHHHHHHhhC--CEEEEEChhHhCcCCCHHHHHHHhc
Confidence 999999999999954311 00 11112346666776654 875 3 354556777777663
No 377
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=94.99 E-value=0.43 Score=47.97 Aligned_cols=99 Identities=16% Similarity=0.230 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh---h
Q psy7343 256 WPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK---A 330 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~---~ 330 (487)
.+.+..+++.+.+..+ +||.+.. |-....+.++...++|.+.||+.|-. +.-.-+.+..+++.+ .
T Consensus 60 ~~~~~~~~~~~A~~~~~~vPV~lHL----DHg~~~e~i~~ai~~GftSVM~DgS~------l~~eeNi~~T~~vve~Ah~ 129 (286)
T PRK08610 60 FYTVVKMVEGLMHDLNITIPVAIHL----DHGSSFEKCKEAIDAGFTSVMIDASH------SPFEENVATTKKVVEYAHE 129 (286)
T ss_pred HHHHHHHHHHHHHHcCCCCCEEEEC----CCCCCHHHHHHHHHcCCCEEEEeCCC------CCHHHHHHHHHHHHHHHHH
Confidence 5556777777766665 8999998 55445666677888999999995431 111123344444433 2
Q ss_pred CCCcEEE----cC----C-------CCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 331 LTIPVIA----NG----N-------IQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 331 ~~iPVi~----nG----g-------I~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+++|-+ .| + .+++++++++.++||+|...++=|
T Consensus 130 ~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiG 178 (286)
T PRK08610 130 KGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALG 178 (286)
T ss_pred cCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeecc
Confidence 3555432 11 1 479999999999999998776544
No 378
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=94.97 E-value=0.15 Score=51.23 Aligned_cols=123 Identities=19% Similarity=0.206 Sum_probs=77.4
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. |+ ..+..-|.+|....-..+.-.++++.+.+.. ++||++.+-- .+..+..+.+
T Consensus 20 d~~~~~~~i~~l~~~--------Gv-~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~-~st~~~i~~a 89 (289)
T PF00701_consen 20 DEDALKRLIDFLIEA--------GV-DGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGA-NSTEEAIELA 89 (289)
T ss_dssp -HHHHHHHHHHHHHT--------TS-SEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEES-SSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc--------CC-CEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcc-hhHHHHHHHH
Confidence 667777777766555 44 3445555556554333444455666555544 5788887621 1456889999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCC---CHHHHHHHHhhCCCcEEE-c-----CCCCCHHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLA---SWEHITAVRKALTIPVIA-N-----GNIQCLADVEACLA 352 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~---~~~~i~~i~~~~~iPVi~-n-----GgI~s~~da~~~l~ 352 (487)
+.+++.|+|++++..-. |.... ..++++.+.+.+++||+. | |---+.+.+.++.+
T Consensus 90 ~~a~~~Gad~v~v~~P~------~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg~~ls~~~l~~L~~ 153 (289)
T PF00701_consen 90 RHAQDAGADAVLVIPPY------YFKPSQEELIDYFRAIADATDLPIIIYNNPARTGNDLSPETLARLAK 153 (289)
T ss_dssp HHHHHTT-SEEEEEEST------SSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHSSTSHHHHHHHHHT
T ss_pred HHHhhcCceEEEEeccc------cccchhhHHHHHHHHHHhhcCCCEEEEECCCccccCCCHHHHHHHhc
Confidence 99999999999994321 22222 247788888889999874 3 55667777777663
No 379
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=94.97 E-value=0.8 Score=46.20 Aligned_cols=148 Identities=17% Similarity=0.152 Sum_probs=87.5
Q ss_pred CCCCCeeeeec-c-CCHHHHHHHHHhhCCc-CcEEEeecCC-CcceeeccCccccccCChHHHHHHHHHHhhh-ccCcEE
Q psy7343 201 PEDRPLIIQFC-G-NDSKNLTEAAKLAEPH-CDGIDINIGC-PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA-VQVPVS 275 (487)
Q Consensus 201 ~~~~Pv~Vqi~-g-~d~~~~~~aa~~~~~~-~d~IdiN~Gc-P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~-~~iPV~ 275 (487)
..+.||++-+- | .++.+..+.++.++++ +.+|+|.=.. |.... |-.-|..-+.+.+...+-+++++++ .+.++.
T Consensus 73 ~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg-~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~ 151 (290)
T TIGR02321 73 TVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTS-LRTDGRQELVRIEEFQGKIAAATAARADRDFV 151 (290)
T ss_pred ccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccc-cccCCCccccCHHHHHHHHHHHHHhCCCCCEE
Confidence 34789999986 2 2334677778877776 7777775332 22110 1001212123555555555555543 366788
Q ss_pred EEeecc-----cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC--CcEEEcC---CCCCHH
Q psy7343 276 CKIRIY-----QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT--IPVIANG---NIQCLA 345 (487)
Q Consensus 276 vKiR~~-----~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~--iPVi~nG---gI~s~~ 345 (487)
++-|.. .+.++..+-++...++|+|.|.|++. ..+.+.++++.+.++ +|+.... ...+.+
T Consensus 152 I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~----------~~~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~ 221 (290)
T TIGR02321 152 VIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSR----------QKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEA 221 (290)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHcCCCEEEecCC----------CCCHHHHHHHHHhcCCCCCeEEecCCCCCCCHH
Confidence 888863 23356677778888999999999653 124567888888775 5786543 233443
Q ss_pred HHHHHHHhcC-CcEEEecc
Q psy7343 346 DVEACLAQTG-VAGVMTAE 363 (487)
Q Consensus 346 da~~~l~~~G-ad~VmiGR 363 (487)
+ +- +.| ...|..|.
T Consensus 222 ~---l~-~lg~~~~v~~g~ 236 (290)
T TIGR02321 222 D---IA-ALSKVGIVIYGN 236 (290)
T ss_pred H---HH-HhcCCcEEEECh
Confidence 3 33 445 66666663
No 380
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=94.94 E-value=0.2 Score=50.86 Aligned_cols=114 Identities=18% Similarity=0.283 Sum_probs=77.4
Q ss_pred chhhhcChhHHHHHHh--cCCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEE-ee-cC-CC---------cceeeccC
Q psy7343 183 AHQFIADKKLRQEILM--STPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGID-IN-IG-CP---------QMVAKRGH 247 (487)
Q Consensus 183 ~~~Ll~~~~~~~~~l~--~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~Id-iN-~G-cP---------~~i~~~gr 247 (487)
+..+-++++.+.++++ +.....||.|||.- +.+++.++|+.++++ .|+|- +| .. -+ ..-..+|+
T Consensus 139 ~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P-~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GG 217 (310)
T COG0167 139 GRALGQDPELLEKLLEAVKAATKVPVFVKLAP-NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGG 217 (310)
T ss_pred hhhhccCHHHHHHHHHHHHhcccCceEEEeCC-CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCC
Confidence 4455558888888885 34456899999987 778999999998887 67764 34 11 11 10011222
Q ss_pred ccccccCChHHHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEE
Q psy7343 248 YGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAV 304 (487)
Q Consensus 248 ~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~V 304 (487)
..+ ..=.+...++++.+.+.++ +||+.-+ .+.+..|+.+.+. +||+.|.|
T Consensus 218 LSG--~~ikp~al~~v~~l~~~~~~~ipIIGvG----GI~s~~DA~E~i~-aGA~~vQv 269 (310)
T COG0167 218 LSG--PPLKPIALRVVAELYKRLGGDIPIIGVG----GIETGEDALEFIL-AGASAVQV 269 (310)
T ss_pred cCc--ccchHHHHHHHHHHHHhcCCCCcEEEec----CcCcHHHHHHHHH-cCCchhee
Confidence 211 2223455677777887775 9999987 7788888887765 79999998
No 381
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=94.93 E-value=0.18 Score=54.75 Aligned_cols=69 Identities=23% Similarity=0.404 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+..+.++.+.++|+|.|.|..- +. .+ ...++.++++++.. ++||++ |+|.|.+++..++ +.|||+|.+|
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a---~G--~s-~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~-~aGad~I~vg 310 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSS---QG--NS-IYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLI-DAGADGLRIG 310 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecC---CC--Cc-hHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHH-HcCCCEEEEC
Confidence 4478888899999999998321 10 11 12368999999986 788888 9999999999999 7999999865
No 382
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=94.93 E-value=1.2 Score=43.34 Aligned_cols=66 Identities=14% Similarity=0.156 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHH-----------HHHHHHHhcCC
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLA-----------DVEACLAQTGV 356 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~-----------da~~~l~~~Ga 356 (487)
..++...+.|+|++.+.+ ...+.+++.. .-.+...+||+ ++ ...+++ +.|+
T Consensus 139 ~~a~~a~~~g~dgvv~~~---------------~~~~~ir~~~~~~~~~v~pGI~-~~g~~~~dq~~~~~~~~ai-~~Ga 201 (230)
T PRK00230 139 RLAKLAQEAGLDGVVCSA---------------QEAAAIREATGPDFLLVTPGIR-PAGSDAGDQKRVMTPAQAI-AAGS 201 (230)
T ss_pred HHHHHHHHcCCeEEEeCh---------------HHHHHHHhhcCCceEEEcCCcC-CCCCCcchHHHHhCHHHHH-HcCC
Confidence 455667788999987721 1134455443 33446668886 33 356667 6899
Q ss_pred cEEEeccccccCccc
Q psy7343 357 AGVMTAEGNLYNPAL 371 (487)
Q Consensus 357 d~VmiGRa~l~~P~l 371 (487)
|++++||++...++-
T Consensus 202 d~iVvGR~I~~a~dP 216 (230)
T PRK00230 202 DYIVVGRPITQAADP 216 (230)
T ss_pred CEEEECCcccCCCCH
Confidence 999999998877554
No 383
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=94.91 E-value=0.23 Score=51.90 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 318 ~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
..+|+.++++++..+.||+. .+|.|.+|++.++ +.|+|+|.++
T Consensus 231 ~ltW~di~~lr~~~~~pviv-KgV~s~~dA~~a~-~~Gvd~I~Vs 273 (381)
T PRK11197 231 SISWKDLEWIRDFWDGPMVI-KGILDPEDARDAV-RFGADGIVVS 273 (381)
T ss_pred CCCHHHHHHHHHhCCCCEEE-EecCCHHHHHHHH-hCCCCEEEEC
Confidence 45899999999999999998 6899999999999 7999999876
No 384
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=94.88 E-value=0.53 Score=47.35 Aligned_cols=100 Identities=19% Similarity=0.240 Sum_probs=65.6
Q ss_pred ChHHHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh---
Q psy7343 255 DWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK--- 329 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~--- 329 (487)
..+.+..+++.+.+..+ +||.+.. |-....+.+..+.++|.+.||+.|-. +.-.-+.+..+++.+
T Consensus 59 ~~~~~~~~~~~~a~~~~~~VPV~lHL----DHg~~~e~i~~ai~~GftSVM~DgS~------lp~eeNi~~Trevv~~Ah 128 (285)
T PRK07709 59 GFKTVVAMVKALIEEMNITVPVAIHL----DHGSSFEKCKEAIDAGFTSVMIDASH------HPFEENVETTKKVVEYAH 128 (285)
T ss_pred CHHHHHHHHHHHHHHcCCCCcEEEEC----CCCCCHHHHHHHHHcCCCEEEEeCCC------CCHHHHHHHHHHHHHHHH
Confidence 35566777777766655 7999987 55555667777788999999995431 111123444444433
Q ss_pred hCCCcEEE-------c-CC-------CCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 330 ALTIPVIA-------N-GN-------IQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 330 ~~~iPVi~-------n-Gg-------I~s~~da~~~l~~~Gad~VmiGRa 364 (487)
..+++|-+ . ++ .++++++.++.++||+|...++=|
T Consensus 129 ~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiG 178 (285)
T PRK07709 129 ARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALG 178 (285)
T ss_pred HcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeec
Confidence 23555432 1 12 589999999999999998876544
No 385
>PRK06801 hypothetical protein; Provisional
Probab=94.87 E-value=0.89 Score=45.77 Aligned_cols=98 Identities=17% Similarity=0.146 Sum_probs=64.9
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh---hC
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK---AL 331 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~---~~ 331 (487)
+.+.+..++..+.+..++||.+.. |-....+.++...+.|++.||+-|-. +...-+.+..+++.+ ..
T Consensus 58 ~~~~~~~~~~~~a~~~~vpV~lHl----DH~~~~e~i~~Ai~~GftSVm~D~S~------l~~eeNi~~t~~v~~~a~~~ 127 (286)
T PRK06801 58 SLESLVEAVKFEAARHDIPVVLNL----DHGLHFEAVVRALRLGFSSVMFDGST------LEYEENVRQTREVVKMCHAV 127 (286)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHhCCcEEEEcCCC------CCHHHHHHHHHHHHHHHHHc
Confidence 467777888888888899999997 55555677777788999999993321 111123344444433 23
Q ss_pred CCcE------EEc----------CC--CCCHHHHHHHHHhcCCcEEEec
Q psy7343 332 TIPV------IAN----------GN--IQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 332 ~iPV------i~n----------Gg--I~s~~da~~~l~~~Gad~VmiG 362 (487)
+++| ++. |. .++++++.++.+++|+|.+.++
T Consensus 128 gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAva 176 (286)
T PRK06801 128 GVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVA 176 (286)
T ss_pred CCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEec
Confidence 4444 111 11 4567999999988999999884
No 386
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=94.86 E-value=0.49 Score=49.40 Aligned_cols=140 Identities=16% Similarity=0.126 Sum_probs=85.1
Q ss_pred CCCCeeeeec----cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccc----cCChHHHHHHHHHHhhhcc-
Q psy7343 202 EDRPLIIQFC----GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYL----QDDWPLLTNLVSSLRQAVQ- 271 (487)
Q Consensus 202 ~~~Pv~Vqi~----g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l----~~d~~~i~eiv~~v~~~~~- 271 (487)
.++|++..++ +-|++.+.+.+..+... .|+|-. .+..|.+- .++.+.+.+.++.+.+.++
T Consensus 128 ~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikd----------de~~ge~~~~~~eER~~~v~~av~~a~~~TG~ 197 (367)
T cd08205 128 HDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKD----------DELLADQPYAPFEERVRACMEAVRRANEETGR 197 (367)
T ss_pred CCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeec----------cccccCcccCCHHHHHHHHHHHHHHHHHhhCC
Confidence 3678877765 45888998888776665 455422 22223321 2344555566665554443
Q ss_pred -CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE--cC---------
Q psy7343 272 -VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA--NG--------- 339 (487)
Q Consensus 272 -iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~--nG--------- 339 (487)
.++.+|+ ..+.++..+.++.+++.|+|++|+..- +.| +.....+++..++||.+ ++
T Consensus 198 ~~~y~~ni--t~~~~e~i~~a~~a~~~Gad~vmv~~~-------~~g---~~~~~~l~~~~~lpi~~H~a~~ga~~~~~~ 265 (367)
T cd08205 198 KTLYAPNI--TGDPDELRRRADRAVEAGANALLINPN-------LVG---LDALRALAEDPDLPIMAHPAFAGALSRSPD 265 (367)
T ss_pred cceEEEEc--CCCHHHHHHHHHHHHHcCCCEEEEecc-------ccc---ccHHHHHHhcCCCeEEEccCcccccccCCC
Confidence 4556666 223467888899999999999999321 222 23344555555777774 11
Q ss_pred CCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 340 NIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 340 gI~s~~da~~~l~~~Gad~VmiGR 363 (487)
.+.+..-..++.+..|+|.+..+.
T Consensus 266 ~g~~~~~~~kl~RlaGad~~~~~~ 289 (367)
T cd08205 266 YGSHFLLLGKLMRLAGADAVIFPG 289 (367)
T ss_pred CcCCHHHHHHHHHHcCCCccccCC
Confidence 234455566677668999987764
No 387
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=94.84 E-value=1 Score=45.32 Aligned_cols=144 Identities=19% Similarity=0.326 Sum_probs=88.8
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-ec
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-RI 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R~ 280 (487)
..||.+.+. +.+.+...++.+ ..|+ .+-..|. .-.+..|-+...++++..+ ..++.|-+-+ .+
T Consensus 74 ~VPValHLDH~~~~e~i~~ai~---~Gft----------SVM~DgS-~lp~eeNi~~T~~vv~~Ah-~~gvsVEaElG~v 138 (284)
T PRK12857 74 SVPVALHLDHGTDFEQVMKCIR---NGFT----------SVMIDGS-KLPLEENIALTKKVVEIAH-AVGVSVEAELGKI 138 (284)
T ss_pred CCCEEEECCCCCCHHHHHHHHH---cCCC----------eEEEeCC-CCCHHHHHHHHHHHHHHHH-HcCCEEEEEeeec
Confidence 569999998 556554443333 2232 2222221 1122456667777776554 3466665532 22
Q ss_pred cc---c---------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCC--CCHHHHHHHHhhCCCcEEEcCCCCCH-H
Q psy7343 281 YQ---D---------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGL--ASWEHITAVRKALTIPVIANGNIQCL-A 345 (487)
Q Consensus 281 ~~---d---------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~--~~~~~i~~i~~~~~iPVi~nGgI~s~-~ 345 (487)
+. + ..++.+..+.++++|+|.+.|.-.|.-.. |.+. -+++.+++|++.+++|++.-||=..+ +
T Consensus 139 gg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~--y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e 216 (284)
T PRK12857 139 GGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGP--YKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPDE 216 (284)
T ss_pred CCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccc--cCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHH
Confidence 21 1 13677888888999999998733332222 5443 47899999999999999876665544 4
Q ss_pred HHHHHHHhcCCcEEEeccc
Q psy7343 346 DVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 346 da~~~l~~~Gad~VmiGRa 364 (487)
++.++. ..|+.-|=+++.
T Consensus 217 ~~~~ai-~~Gi~KiNi~T~ 234 (284)
T PRK12857 217 AIRKAI-SLGVRKVNIDTN 234 (284)
T ss_pred HHHHHH-HcCCeEEEeCcH
Confidence 677777 788888877764
No 388
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=94.84 E-value=0.14 Score=47.39 Aligned_cols=91 Identities=20% Similarity=0.271 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhcc-C-cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh----h-C
Q psy7343 259 LTNLVSSLRQAVQ-V-PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK----A-L 331 (487)
Q Consensus 259 i~eiv~~v~~~~~-i-PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~----~-~ 331 (487)
+.+.++++++..+ . +|.+.. ++.++ ++.+.++|+|.|++..- ..+.++++.+ . .
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv------~~~ee-~~ea~~~g~d~I~lD~~------------~~~~~~~~v~~l~~~~~ 126 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEV------ENLEE-AEEALEAGADIIMLDNM------------SPEDLKEAVEELRELNP 126 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEE------SSHHH-HHHHHHTT-SEEEEES-------------CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCceEEEEc------CCHHH-HHHHHHhCCCEEEecCc------------CHHHHHHHHHHHhhcCC
Confidence 4556666666553 2 255544 34444 44555689999999211 2233444333 2 2
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
++.+.++|||+ .+.+.++. .+|+|.+.+|.....-|+
T Consensus 127 ~v~ie~SGGI~-~~ni~~ya-~~gvD~isvg~~~~~a~~ 163 (169)
T PF01729_consen 127 RVKIEASGGIT-LENIAEYA-KTGVDVISVGSLTHSAPP 163 (169)
T ss_dssp TSEEEEESSSS-TTTHHHHH-HTT-SEEEECHHHHSBE-
T ss_pred cEEEEEECCCC-HHHHHHHH-hcCCCEEEcChhhcCCcc
Confidence 68899999995 67788887 799999999976554443
No 389
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.84 E-value=0.58 Score=46.63 Aligned_cols=117 Identities=15% Similarity=0.225 Sum_probs=75.4
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCC-CCCCHHHHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT-GLASWEHITAV 327 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~-g~~~~~~i~~i 327 (487)
|+....+.+++.++ ..++.||++|--...+.+++..+++.+...|..-+++-=|+......|. ...++..+..+
T Consensus 117 ga~~~~n~~LL~~~-----a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~l 191 (266)
T PRK13398 117 GSRNMQNFELLKEV-----GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVI 191 (266)
T ss_pred CcccccCHHHHHHH-----hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHH
Confidence 44445666666653 2468999999765557778888899999999876665334221111122 12366788888
Q ss_pred HhhCCCcEEEc-CCCCC-----HHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 328 RKALTIPVIAN-GNIQC-----LADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 328 ~~~~~iPVi~n-GgI~s-----~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
++..+.||++. .-... ...+...+ ..||||+||=+-+--+-.+
T Consensus 192 k~~~~~pV~~D~sHs~G~~~~v~~~~~aAv-a~Ga~Gl~iE~H~~pd~a~ 240 (266)
T PRK13398 192 KELSHLPIIVDPSHATGRRELVIPMAKAAI-AAGADGLMIEVHPEPEKAL 240 (266)
T ss_pred HhccCCCEEEeCCCcccchhhHHHHHHHHH-HcCCCEEEEeccCCccccC
Confidence 88889999993 32223 34444555 5899999988755544444
No 390
>PLN02363 phosphoribosylanthranilate isomerase
Probab=94.83 E-value=4.6 Score=40.01 Aligned_cols=183 Identities=12% Similarity=0.118 Sum_probs=94.9
Q ss_pred ccCCCchHHHHHHHHhCCccceecccc--chhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHHHHHhhCCc-CcE
Q psy7343 156 MVDASELPWRLLSRRYGSHLCYTPMVS--AHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTEAAKLAEPH-CDG 231 (487)
Q Consensus 156 ma~~td~~fr~i~~~~Ga~l~~t~~v~--~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~-~d~ 231 (487)
..|+++..=...+.++|++.+. +|. .+.=.-+++...++.+..+....-.|=++ ..++++..++ +++. .|.
T Consensus 51 ICGit~~eda~~a~~~GaD~iG--fIf~~~SpR~Vs~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~---~~~~~ld~ 125 (256)
T PLN02363 51 MCGITSARDAAMAVEAGADFIG--MILWPKSKRSISLSVAKEISQVAREGGAKPVGVFVDDDANTILRA---ADSSDLEL 125 (256)
T ss_pred ECCCCcHHHHHHHHHcCCCEEE--EecCCCCCCcCCHHHHHHHHHhccccCccEEEEEeCCCHHHHHHH---HHhcCCCE
Confidence 3456665545667788886532 221 11111233445556553332111123333 3455555444 4444 566
Q ss_pred EEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCC
Q psy7343 232 IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQ 311 (487)
Q Consensus 232 IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~ 311 (487)
|+|| |. .+++.+.+ ++. .++++--+++.. ..+..+.........+|++.+-...
T Consensus 126 VQLH----------G~------e~~~~~~~----l~~--~~~iikai~v~~-~~~~~~~~~~~~~~~~D~~LlDs~~--- 179 (256)
T PLN02363 126 VQLH----------GN------GSRAAFSR----LVR--ERKVIYVLNANE-DGKLLNVVPEEDCHLADWILVDSAT--- 179 (256)
T ss_pred EEEC----------CC------CCHHHHHH----hhc--CCcEEEEEEECc-hHHHHHHHHhhccccCCEEEEeCCC---
Confidence 6665 32 23444333 332 255655554431 1111111111112348999885431
Q ss_pred CCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 312 RGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 312 ~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
|+..-..+|+.+....-....|++.+|||. ++.+.++++..+..||-+.+|+=..|-.
T Consensus 180 -GGtG~t~DW~~l~~~~~~~~~p~iLAGGL~-peNV~~ai~~~~P~GVDVsSGVE~~pG~ 237 (256)
T PLN02363 180 -GGSGKGFNWQNFKLPSVRSRNGWLLAGGLT-PENVHEAVSLLKPTGVDVSSGICGPDGI 237 (256)
T ss_pred -CCCCCccCHHHhcccccccCCCEEEECCCC-HHHHHHHHHhcCCcEEEeCCcccCCCCc
Confidence 222223578766411111256899999995 7888888877889999999998777764
No 391
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=94.82 E-value=0.43 Score=47.97 Aligned_cols=97 Identities=20% Similarity=0.232 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHhhhcc-CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh---hC
Q psy7343 256 WPLLTNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK---AL 331 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~---~~ 331 (487)
.+.+...++.+.+..+ +||.+.. |-....+.++...+.|++.||+-+-. +.-.-+.+..+++.+ ..
T Consensus 58 ~~~~~~~~~~~a~~~~~vpv~lhl----DH~~~~e~i~~ai~~Gf~sVmid~s~------l~~~eni~~t~~v~~~a~~~ 127 (282)
T TIGR01859 58 YKMAVAMVKTLIERMSIVPVALHL----DHGSSYESCIKAIKAGFSSVMIDGSH------LPFEENLALTKKVVEIAHAK 127 (282)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEC----CCCCCHHHHHHHHHcCCCEEEECCCC------CCHHHHHHHHHHHHHHHHHc
Confidence 4556777777777777 9999987 54445667777778899999993221 111112344444443 33
Q ss_pred CCcEEE---------------cCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 332 TIPVIA---------------NGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 332 ~iPVi~---------------nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+++|-+ ....++++++.++.+++|+|.+.++
T Consensus 128 gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs 173 (282)
T TIGR01859 128 GVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAA 173 (282)
T ss_pred CCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeec
Confidence 555441 0226799999999977999999954
No 392
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=94.82 E-value=0.38 Score=48.34 Aligned_cols=126 Identities=12% Similarity=0.089 Sum_probs=76.7
Q ss_pred CHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHH
Q psy7343 214 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYA 291 (487)
Q Consensus 214 d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a 291 (487)
|.+.+.+.++.+.+. +|+ ..+...|.+|....-..+.-.++++.+.+.+ .+||++.+-- .+..+..+.+
T Consensus 19 D~~~~~~~i~~l~~~-------~Gv-~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~-~~~~~ai~~a 89 (288)
T cd00954 19 NEDVLRAIVDYLIEK-------QGV-DGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGS-LNLKESQELA 89 (288)
T ss_pred CHHHHHHHHHHHHhc-------CCC-CEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCC-CCHHHHHHHH
Confidence 666677666655332 023 3344455556554334555556666555544 4788886511 2455778999
Q ss_pred HHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEE------cCCCCCHHHHHHHH
Q psy7343 292 RMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIA------NGNIQCLADVEACL 351 (487)
Q Consensus 292 ~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~------nGgI~s~~da~~~l 351 (487)
+.+++.|+|++++..-.. .. .+...-.++++.+.+.+ ++||+. .|---+++.+.++.
T Consensus 90 ~~a~~~Gad~v~~~~P~y-~~--~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~ 153 (288)
T cd00954 90 KHAEELGYDAISAITPFY-YK--FSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELF 153 (288)
T ss_pred HHHHHcCCCEEEEeCCCC-CC--CCHHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHh
Confidence 999999999999843211 00 11112357788888888 899873 35556777777776
No 393
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=94.81 E-value=0.43 Score=47.78 Aligned_cols=101 Identities=21% Similarity=0.259 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh---CC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA---LT 332 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~---~~ 332 (487)
.+.+..+++.+.+..++||.+.. |-....+.+....++|.+.||+.|-. +.-.-+.+..+++.+. .+
T Consensus 54 ~~~~~~~~~~~a~~~~VPV~lHL----DH~~~~~~i~~ai~~GftSVMiD~S~------l~~eeNi~~t~~vv~~ah~~g 123 (276)
T cd00947 54 LELLVAMVKAAAERASVPVALHL----DHGSSFELIKRAIRAGFSSVMIDGSH------LPFEENVAKTKEVVELAHAYG 123 (276)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHhCCCEEEeCCCC------CCHHHHHHHHHHHHHHHHHcC
Confidence 56677778777777899999998 54444455566678899999994321 1111233444444332 24
Q ss_pred CcEEE--------cCC-------CCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 333 IPVIA--------NGN-------IQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 333 iPVi~--------nGg-------I~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
+.|-+ .++ .+++++++++.+++|+|...++=|-.
T Consensus 124 v~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~ 172 (276)
T cd00947 124 VSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTS 172 (276)
T ss_pred CeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCcc
Confidence 44322 111 56899999999999999888765544
No 394
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=94.79 E-value=0.65 Score=46.78 Aligned_cols=144 Identities=17% Similarity=0.314 Sum_probs=88.7
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-ec
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-RI 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R~ 280 (487)
..||.+++. +.+.+...++.+. .|+-| -..+. .-.+..|.+...++++..+ ..++.|-+-+ ++
T Consensus 73 ~vPValHLDH~~~~e~i~~ai~~---GftSV----------M~DgS-~l~~eeNi~~T~~vv~~ah-~~gv~VEaElG~i 137 (287)
T PF01116_consen 73 SVPVALHLDHGKDFEDIKRAIDA---GFTSV----------MIDGS-ALPFEENIAITREVVEYAH-AYGVSVEAELGHI 137 (287)
T ss_dssp TSEEEEEEEEE-SHHHHHHHHHH---TSSEE----------EEE-T-TS-HHHHHHHHHHHHHHHH-HTT-EEEEEESBS
T ss_pred CCCEEeecccCCCHHHHHHHHHh---Ccccc----------cccCC-cCCHHHHHHHHHHHHHhhh-hhCCEEEEEeeee
Confidence 478888887 5565554444433 23222 22221 1122445666677776554 3466666643 22
Q ss_pred cc--c---c--------ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC--C--CCHHHHHHHHhhC-CCcEEEcCCCC
Q psy7343 281 YQ--D---V--------NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG--L--ASWEHITAVRKAL-TIPVIANGNIQ 342 (487)
Q Consensus 281 ~~--d---~--------~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g--~--~~~~~i~~i~~~~-~iPVi~nGgI~ 342 (487)
+. | . .++.++.+.++++|+|.+.|.=.|.-.. |.+ . -+++.+++|++.+ ++|++.-||=.
T Consensus 138 ~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~--y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG 215 (287)
T PF01116_consen 138 GGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGM--YKGGKKPKLDFDRLKEIREAVPDIPLVLHGGSG 215 (287)
T ss_dssp SSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSS--BSSSSSTC--HHHHHHHHHHHHTSEEEESSCTT
T ss_pred eccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCccccc--cCCCCCcccCHHHHHHHHHhcCCCCEEEECCCC
Confidence 21 1 1 2678888888999999998843333322 555 3 3689999999999 99999888776
Q ss_pred CHH-HHHHHHHhcCCcEEEeccc
Q psy7343 343 CLA-DVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 343 s~~-da~~~l~~~Gad~VmiGRa 364 (487)
.++ ++.+++ ..|+.-|=+++.
T Consensus 216 ~~~e~~~~ai-~~Gi~KiNi~T~ 237 (287)
T PF01116_consen 216 LPDEQIRKAI-KNGISKINIGTE 237 (287)
T ss_dssp S-HHHHHHHH-HTTEEEEEESHH
T ss_pred CCHHHHHHHH-HcCceEEEEehH
Confidence 666 788888 789988888874
No 395
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=94.74 E-value=0.37 Score=49.96 Aligned_cols=96 Identities=14% Similarity=0.084 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh--C
Q psy7343 256 WPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA--L 331 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~--~ 331 (487)
++.-.+.++++++.++ +.+.+-..-+|+..+..++++.+++.++..+- | + . ...+++..+++++. +
T Consensus 165 ~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~~E-------e-P-~-~~~d~~~~~~l~~~~~~ 234 (352)
T cd03328 165 PRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEGVTWFE-------E-P-V-SSDDLAGLRLVRERGPA 234 (352)
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHhCcchhh-------C-C-C-ChhhHHHHHHHHhhCCC
Confidence 4445566777887763 44544333356777889999999998776552 1 1 1 22468889999999 8
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++||.+.=.+.+..|+.++++...+|.+++
T Consensus 235 ~iPIa~gE~~~~~~~~~~li~~~a~div~~ 264 (352)
T cd03328 235 GMDIAAGEYAYTLAYFRRLLEAHAVDVLQA 264 (352)
T ss_pred CCCEEecccccCHHHHHHHHHcCCCCEEec
Confidence 899999888999999999996666787753
No 396
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=94.72 E-value=1.3 Score=45.00 Aligned_cols=105 Identities=17% Similarity=0.160 Sum_probs=67.3
Q ss_pred ChHHHHHHHHHHhhhcc-CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh---
Q psy7343 255 DWPLLTNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA--- 330 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~--- 330 (487)
..+.+..+++.+.+..+ +||.+.. |-....+.++...++|.+.||+.|-. +.-.-+.+..+++.+.
T Consensus 57 g~~~~~~~~~~~a~~~~~VPValHL----DHg~~~e~i~~ai~~GftSVM~DgS~------l~~eeNi~~T~~vve~Ah~ 126 (307)
T PRK05835 57 GIDMAVGMVKIMCERYPHIPVALHL----DHGTTFESCEKAVKAGFTSVMIDASH------HAFEENLELTSKVVKMAHN 126 (307)
T ss_pred ChHHHHHHHHHHHHhcCCCeEEEEC----CCCCCHHHHHHHHHcCCCEEEEeCCC------CCHHHHHHHHHHHHHHHHH
Confidence 35566677777777775 9999998 65555777778888999999995431 1111233444444332
Q ss_pred CCCcEEE----cC----C---------CCCHHHHHHHHHhcCCcEEEeccccccCc
Q psy7343 331 LTIPVIA----NG----N---------IQCLADVEACLAQTGVAGVMTAEGNLYNP 369 (487)
Q Consensus 331 ~~iPVi~----nG----g---------I~s~~da~~~l~~~Gad~VmiGRa~l~~P 369 (487)
.++.|-+ .| + .++++++.++.++||+|...++=|-....
T Consensus 127 ~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~ 182 (307)
T PRK05835 127 AGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGA 182 (307)
T ss_pred cCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccccc
Confidence 2444321 11 1 56789999999999999877665544433
No 397
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=94.69 E-value=0.65 Score=47.80 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=76.6
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCC-CCCCCHHHHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN-TGLASWEHITAV 327 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~-~g~~~~~~i~~i 327 (487)
|+..+.+.+++.++- .++.||.+|--...+.+++...++.+...|.+.+++-=|+......| ....|+..+..+
T Consensus 183 gAr~~~N~~LL~~va-----~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~l 257 (335)
T PRK08673 183 GARNMQNFDLLKEVG-----KTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVI 257 (335)
T ss_pred CcccccCHHHHHHHH-----cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHH
Confidence 444556778776643 35899999976555677888888899899987666633422111112 234577889999
Q ss_pred HhhCCCcEEEcCCCCCH------HHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 328 RKALTIPVIANGNIQCL------ADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 328 ~~~~~iPVi~nGgI~s~------~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
++..+.|||+.-+-.+. ..+.... ..||||++|-+-.--+-.+
T Consensus 258 k~~~~lPVi~d~sH~~G~~~~v~~~a~AAv-A~GAdGliIE~H~~pd~al 306 (335)
T PRK08673 258 KKLTHLPVIVDPSHATGKRDLVEPLALAAV-AAGADGLIVEVHPDPEKAL 306 (335)
T ss_pred HHhcCCCEEEeCCCCCccccchHHHHHHHH-HhCCCEEEEEecCCcccCC
Confidence 99889999874333332 2334445 6899999998654333333
No 398
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=94.62 E-value=0.63 Score=46.03 Aligned_cols=151 Identities=21% Similarity=0.278 Sum_probs=83.5
Q ss_pred CCCchHHHHHHHHhCCccceeccccchhhhcChh----HHHHHHh-----cCCCCCC-eeeeec-c---CCHHHHHHH-H
Q psy7343 158 DASELPWRLLSRRYGSHLCYTPMVSAHQFIADKK----LRQEILM-----STPEDRP-LIIQFC-G---NDSKNLTEA-A 222 (487)
Q Consensus 158 ~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~----~~~~~l~-----~~~~~~P-v~Vqi~-g---~d~~~~~~a-a 222 (487)
.+-|.....+..+.|.+.+.+.--.+...+-.++ -..+++. ....+.| |++-+- + +++++..+. .
T Consensus 18 ~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~ 97 (254)
T cd06557 18 TAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAA 97 (254)
T ss_pred eCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHH
Confidence 3446666677888888776653111111111111 1222221 2234567 666553 2 457776554 5
Q ss_pred HhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecc--------------cc---cc
Q psy7343 223 KLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY--------------QD---VN 285 (487)
Q Consensus 223 ~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~--------------~d---~~ 285 (487)
+.++++ |+ ..+...|. ....+.+++++++ ++||..-+-+. .+ .+
T Consensus 98 r~~~~a--------Ga-~aVkiEd~---------~~~~~~I~al~~a-gipV~gHiGL~pq~~~~~gg~~~~grt~~~a~ 158 (254)
T cd06557 98 RLMKEA--------GA-DAVKLEGG---------AEVAETIRALVDA-GIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAE 158 (254)
T ss_pred HHHHHh--------CC-eEEEEcCc---------HHHHHHHHHHHHc-CCCeeccccccceeeeccCCceeccCCHHHHH
Confidence 566656 43 22222221 2444555555543 78887432221 11 23
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcC
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANG 339 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nG 339 (487)
+..+-++.++++|||.|.+- +.+ -+.++++.+.+++|+|+-|
T Consensus 159 ~~i~ra~a~~~AGA~~i~lE-----------~v~-~~~~~~i~~~v~iP~igiG 200 (254)
T cd06557 159 RLLEDALALEEAGAFALVLE-----------CVP-AELAKEITEALSIPTIGIG 200 (254)
T ss_pred HHHHHHHHHHHCCCCEEEEc-----------CCC-HHHHHHHHHhCCCCEEEec
Confidence 55677888999999999882 122 3688999999999999765
No 399
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=94.56 E-value=0.11 Score=49.32 Aligned_cols=148 Identities=18% Similarity=0.235 Sum_probs=79.8
Q ss_pred CeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcc---ee-eccC----------------------ccccccCChH
Q psy7343 205 PLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQM---VA-KRGH----------------------YGAYLQDDWP 257 (487)
Q Consensus 205 Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~---i~-~~gr----------------------~G~~l~~d~~ 257 (487)
+++.=+++.++++..+.++.+.+. ...|||.+-.|.. +. .+.. .|+.+.-.|-
T Consensus 9 ~iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP~ 88 (196)
T PF01081_consen 9 KIIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSPG 88 (196)
T ss_dssp SEEEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEESS
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECCC
Confidence 455556666666666666655443 6666666655431 00 0000 1111111233
Q ss_pred HHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEE
Q psy7343 258 LLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVI 336 (487)
Q Consensus 258 ~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi 336 (487)
.-.++++..++ .++|++=- ..+..|+...+ ++|++.|-+..-.. +.| ..+++.++.-+ +++++
T Consensus 89 ~~~~v~~~~~~-~~i~~iPG------~~TptEi~~A~-~~G~~~vK~FPA~~-----~GG---~~~ik~l~~p~p~~~~~ 152 (196)
T PF01081_consen 89 FDPEVIEYARE-YGIPYIPG------VMTPTEIMQAL-EAGADIVKLFPAGA-----LGG---PSYIKALRGPFPDLPFM 152 (196)
T ss_dssp --HHHHHHHHH-HTSEEEEE------ESSHHHHHHHH-HTT-SEEEETTTTT-----TTH---HHHHHHHHTTTTT-EEE
T ss_pred CCHHHHHHHHH-cCCcccCC------cCCHHHHHHHH-HCCCCEEEEecchh-----cCc---HHHHHHHhccCCCCeEE
Confidence 33344443332 25555432 23555655444 68999998832110 111 46788888766 79999
Q ss_pred EcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 337 ~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
..|||.. +++.+.+ +.|+.+|.+|+.+..+.+
T Consensus 153 ptGGV~~-~N~~~~l-~ag~~~vg~Gs~L~~~~~ 184 (196)
T PF01081_consen 153 PTGGVNP-DNLAEYL-KAGAVAVGGGSWLFPKDL 184 (196)
T ss_dssp EBSS--T-TTHHHHH-TSTTBSEEEESGGGSHHH
T ss_pred EcCCCCH-HHHHHHH-hCCCEEEEECchhcCHHH
Confidence 9999975 7899999 799999999986655443
No 400
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=94.50 E-value=0.61 Score=46.85 Aligned_cols=101 Identities=15% Similarity=0.179 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh---hCC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK---ALT 332 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~---~~~ 332 (487)
.+.+..++....+..++||.+.. |-....+.++.+.+.|++.||+-+-. ....-+.+..+++++ ..+
T Consensus 59 ~~~~~~~~~~~a~~~~vpv~lHl----DH~~~~e~i~~Al~~G~tsVm~d~s~------~~~~eni~~t~~v~~~a~~~g 128 (281)
T PRK06806 59 LHLIGPLMVAAAKQAKVPVAVHF----DHGMTFEKIKEALEIGFTSVMFDGSH------LPLEENIQKTKEIVELAKQYG 128 (281)
T ss_pred hHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCEEEEcCCC------CCHHHHHHHHHHHHHHHHHcC
Confidence 44555566666666789999987 55555667777778899999993221 111123344444433 335
Q ss_pred CcEEEc----C---------C--CCCHHHHHHHHHhcCCcEEEe--ccccc
Q psy7343 333 IPVIAN----G---------N--IQCLADVEACLAQTGVAGVMT--AEGNL 366 (487)
Q Consensus 333 iPVi~n----G---------g--I~s~~da~~~l~~~Gad~Vmi--GRa~l 366 (487)
+||-+- | | .++++++.++.+.+|+|.+.+ |..+-
T Consensus 129 v~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg 179 (281)
T PRK06806 129 ATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAHG 179 (281)
T ss_pred CeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCCC
Confidence 554322 2 1 478999999987899999999 55433
No 401
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=94.48 E-value=0.29 Score=52.53 Aligned_cols=69 Identities=20% Similarity=0.397 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+..+-++.+.++|+|.|.|... +. . ...-++.++++++.. ++||++ |+|.|.+++..++ +.|||+|-+|
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a---~g--~-~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~-~aGad~i~vg 293 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSS---HG--H-SIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALI-DAGADGLRVG 293 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECC---CC--c-HhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHH-HhCCCEEEEC
Confidence 4456667888899999999321 11 1 122458899999884 899998 9999999999999 7899999865
No 402
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=94.47 E-value=0.27 Score=53.08 Aligned_cols=100 Identities=23% Similarity=0.318 Sum_probs=69.9
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEE--ec
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVM--TA 362 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~Vm--iG 362 (487)
+..+.++.+.+.|+|.|.+..-.. . +..-++.+++||+.. +++|++ |+|.|.+.++.++ +.|||+|- ||
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~-----~-~~~~~~~i~~ik~~~p~~~v~a-gnv~t~~~a~~l~-~aGad~v~vgig 298 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHG-----H-QEKMLEALRAVRALDPGVPIVA-GNVVTAEGTRDLV-EAGADIVKVGVG 298 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCC-----c-cHHHHHHHHHHHHHCCCCeEEe-eccCCHHHHHHHH-HcCCCEEEECcc
Confidence 567888899999999998832111 1 223468999999987 788887 9999999999999 68999976 44
Q ss_pred cccccCcccccCCCCCcHHHHHHHHHHHHHc
Q psy7343 363 EGNLYNPALFTGQTRPAWELASEYLDLVAQY 393 (487)
Q Consensus 363 Ra~l~~P~lf~~~~~~~~~~~~~~l~~~~~~ 393 (487)
.|-+---....+...+....+.+..+.+..+
T Consensus 299 ~gsictt~~~~~~~~p~~~av~~~~~~~~~~ 329 (479)
T PRK07807 299 PGAMCTTRMMTGVGRPQFSAVLECAAAAREL 329 (479)
T ss_pred CCcccccccccCCchhHHHHHHHHHHHHHhc
Confidence 5445444455554444455555544544454
No 403
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=94.46 E-value=0.16 Score=46.57 Aligned_cols=68 Identities=24% Similarity=0.330 Sum_probs=57.0
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
|........+.+++.+.|.|-| +.| .--..++++.+.+++|||+.|=|.+-|++.+++ +.||-+|.-.
T Consensus 106 DS~Al~~~~~~i~~~~pD~iEv----------LPG-v~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al-~aGA~avSTs 173 (181)
T COG1954 106 DSIALEKGIKQIEKSEPDFIEV----------LPG-VMPKVIKEITEKTHIPIIAGGLIETEEEVREAL-KAGAVAVSTS 173 (181)
T ss_pred cHHHHHHHHHHHHHcCCCEEEE----------cCc-ccHHHHHHHHHhcCCCEEeccccccHHHHHHHH-HhCcEEEeec
Confidence 5556677777888899999999 445 445789999999999999999999999999999 7898887644
No 404
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=94.46 E-value=1.2 Score=42.93 Aligned_cols=131 Identities=18% Similarity=0.171 Sum_probs=78.6
Q ss_pred CCeeeeecc----CCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee
Q psy7343 204 RPLIIQFCG----NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR 279 (487)
Q Consensus 204 ~Pv~Vqi~g----~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR 279 (487)
.-|++|... .++++..++++.+.++ |. ..+.. ..+ +.++++++.+++||+..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~a~a~~~~--------G~-~~~~~---------~~~----~~i~~i~~~~~~Pil~~~~ 64 (221)
T PRK01130 7 LIVSCQALPGEPLHSPEIMAAMALAAVQG--------GA-VGIRA---------NGV----EDIKAIRAVVDVPIIGIIK 64 (221)
T ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHHC--------CC-eEEEc---------CCH----HHHHHHHHhCCCCEEEEEe
Confidence 346667652 3556677778777666 33 11111 113 4455677778999985544
Q ss_pred cc-cc--c--ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhc
Q psy7343 280 IY-QD--V--NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQT 354 (487)
Q Consensus 280 ~~-~d--~--~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~ 354 (487)
-. ++ . ....+.++.+.++|+|.|.+..+... . ..+....+.++++++..++|++. ++.|.+++.++. ..
T Consensus 65 ~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~-~--p~~~~~~~~i~~~~~~~~i~vi~--~v~t~ee~~~a~-~~ 138 (221)
T PRK01130 65 RDYPDSEVYITPTLKEVDALAAAGADIIALDATLRP-R--PDGETLAELVKRIKEYPGQLLMA--DCSTLEEGLAAQ-KL 138 (221)
T ss_pred cCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCC-C--CCCCCHHHHHHHHHhCCCCeEEE--eCCCHHHHHHHH-Hc
Confidence 11 01 1 12345678889999998877433110 0 01122246666666545777775 678999998777 78
Q ss_pred CCcEEEec
Q psy7343 355 GVAGVMTA 362 (487)
Q Consensus 355 Gad~VmiG 362 (487)
|+|.+.++
T Consensus 139 G~d~i~~~ 146 (221)
T PRK01130 139 GFDFIGTT 146 (221)
T ss_pred CCCEEEcC
Confidence 99999874
No 405
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.41 E-value=0.26 Score=47.00 Aligned_cols=78 Identities=24% Similarity=0.312 Sum_probs=62.0
Q ss_pred cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHH
Q psy7343 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLA 352 (487)
Q Consensus 273 PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~ 352 (487)
+++.=+|.. +.++..+.++.+.+.|+..|-|.-| .+...+.|+++++..+--+++.|.|.|.+++++++
T Consensus 5 ~vv~Vir~~-~~~~a~~ia~al~~gGi~~iEit~~---------tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai- 73 (201)
T PRK06015 5 PVIPVLLID-DVEHAVPLARALAAGGLPAIEITLR---------TPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAA- 73 (201)
T ss_pred CEEEEEEcC-CHHHHHHHHHHHHHCCCCEEEEeCC---------CccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHH-
Confidence 455545533 6778899999999999999999533 33345889999887765679999999999999999
Q ss_pred hcCCcEEEe
Q psy7343 353 QTGVAGVMT 361 (487)
Q Consensus 353 ~~Gad~Vmi 361 (487)
+.|++.++.
T Consensus 74 ~aGA~FivS 82 (201)
T PRK06015 74 KAGSRFIVS 82 (201)
T ss_pred HcCCCEEEC
Confidence 789998873
No 406
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.39 E-value=0.53 Score=47.17 Aligned_cols=87 Identities=11% Similarity=0.098 Sum_probs=56.4
Q ss_pred HHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCc
Q psy7343 259 LTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIP 334 (487)
Q Consensus 259 i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iP 334 (487)
+.+.++.+++..+ .+|.+-. ++..++. .+.++|+|.|++.. + +.+.+++..+.+ ..+
T Consensus 180 i~~ai~~~r~~~~~~~kIeVEv------~tleea~-ea~~~gaDiI~LDn--------~----s~e~l~~av~~~~~~~~ 240 (281)
T PRK06106 180 VREAIRRARAGVGHLVKIEVEV------DTLDQLE-EALELGVDAVLLDN--------M----TPDTLREAVAIVAGRAI 240 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEEe------CCHHHHH-HHHHcCCCEEEeCC--------C----CHHHHHHHHHHhCCCce
Confidence 4455566666553 4455543 3445444 44578999999921 1 234444444333 567
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
+.++|||+ .+.+.++- .+|+|.+.+|.--.
T Consensus 241 leaSGGI~-~~ni~~yA-~tGVD~Is~Galth 270 (281)
T PRK06106 241 TEASGRIT-PETAPAIA-ASGVDLISVGWLTH 270 (281)
T ss_pred EEEECCCC-HHHHHHHH-hcCCCEEEeChhhc
Confidence 99999995 78888887 79999999997444
No 407
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=94.39 E-value=0.38 Score=49.81 Aligned_cols=42 Identities=26% Similarity=0.386 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 318 ~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
..+|+.++++++..++||+.- ||.+++|++.+. +.|+|+|.+
T Consensus 207 ~~~~~~l~~lr~~~~~PvivK-gv~~~~dA~~a~-~~G~d~I~v 248 (351)
T cd04737 207 KLSPADIEFIAKISGLPVIVK-GIQSPEDADVAI-NAGADGIWV 248 (351)
T ss_pred CCCHHHHHHHHHHhCCcEEEe-cCCCHHHHHHHH-HcCCCEEEE
Confidence 347999999999999999986 589999999988 799999988
No 408
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=94.38 E-value=0.34 Score=46.26 Aligned_cols=77 Identities=23% Similarity=0.301 Sum_probs=63.2
Q ss_pred cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHH
Q psy7343 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLA 352 (487)
Q Consensus 273 PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~ 352 (487)
||+.-+|.. +.++....++.+.+.|++.|-|.=| .+.-.+.|+.+++...--+|+.|-|.|++++.++.
T Consensus 14 ~vI~Vlr~~-~~e~a~~~a~Ali~gGi~~IEITl~---------sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~- 82 (211)
T COG0800 14 PVVPVIRGD-DVEEALPLAKALIEGGIPAIEITLR---------TPAALEAIRALAKEFPEALIGAGTVLNPEQARQAI- 82 (211)
T ss_pred CeeEEEEeC-CHHHHHHHHHHHHHcCCCeEEEecC---------CCCHHHHHHHHHHhCcccEEccccccCHHHHHHHH-
Confidence 455444443 7788999999999999999999534 33446899999998887789999999999999999
Q ss_pred hcCCcEEE
Q psy7343 353 QTGVAGVM 360 (487)
Q Consensus 353 ~~Gad~Vm 360 (487)
..|++.+.
T Consensus 83 ~aGa~fiV 90 (211)
T COG0800 83 AAGAQFIV 90 (211)
T ss_pred HcCCCEEE
Confidence 78999876
No 409
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=94.37 E-value=0.38 Score=50.09 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 318 LASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 318 ~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
..+|+.++++++..++||+.= ||.+.+|++.+. +.|+|+|.|+-
T Consensus 214 ~~~w~~i~~l~~~~~~PvivK-Gv~~~eda~~a~-~~Gvd~I~VS~ 257 (367)
T TIGR02708 214 KLSPRDIEEIAGYSGLPVYVK-GPQCPEDADRAL-KAGASGIWVTN 257 (367)
T ss_pred CCCHHHHHHHHHhcCCCEEEe-CCCCHHHHHHHH-HcCcCEEEECC
Confidence 357999999999999999985 699999999999 79999997753
No 410
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.37 E-value=0.46 Score=47.75 Aligned_cols=91 Identities=14% Similarity=0.170 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCc
Q psy7343 259 LTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIP 334 (487)
Q Consensus 259 i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iP 334 (487)
+.+.++.+|+..+ .+|.+- .++.++ ++.+.++|+|.|++.. + +.+.++++.+.+ ++.
T Consensus 183 i~~av~~~r~~~~~~~kIeVE------v~tlee-a~~a~~agaDiImLDn--------m----spe~l~~av~~~~~~~~ 243 (290)
T PRK06559 183 VQKAIAQARAYAPFVKMVEVE------VESLAA-AEEAAAAGADIIMLDN--------M----SLEQIEQAITLIAGRSR 243 (290)
T ss_pred HHHHHHHHHHhCCCCCeEEEE------CCCHHH-HHHHHHcCCCEEEECC--------C----CHHHHHHHHHHhcCceE
Confidence 3455555665543 334443 334444 4455578999999921 1 233344433332 577
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
+.++|||+ .+.+.++. .+|+|.+.+|.-...-|+
T Consensus 244 leaSGGI~-~~ni~~yA-~tGVD~Is~galthsa~~ 277 (290)
T PRK06559 244 IECSGNID-MTTISRFR-GLAIDYVSSGSLTHSAKS 277 (290)
T ss_pred EEEECCCC-HHHHHHHH-hcCCCEEEeCccccCCcc
Confidence 89999995 78888887 799999999975443343
No 411
>PRK08185 hypothetical protein; Provisional
Probab=94.33 E-value=1.7 Score=43.65 Aligned_cols=96 Identities=18% Similarity=0.157 Sum_probs=61.9
Q ss_pred HHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHH---hhCCCcE
Q psy7343 259 LTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR---KALTIPV 335 (487)
Q Consensus 259 i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~---~~~~iPV 335 (487)
+..++..+.+..++||.+.. |-....+.++.+.+.|++.||+-+-. +.-.-+.+..+++. ...+++|
T Consensus 56 ~~~~~~~~a~~~~vPV~lHL----DHg~~~e~i~~ai~~Gf~SVM~D~S~------l~~eeNi~~t~~vv~~a~~~gv~v 125 (283)
T PRK08185 56 FFAYVRERAKRSPVPFVIHL----DHGATIEDVMRAIRCGFTSVMIDGSL------LPYEENVALTKEVVELAHKVGVSV 125 (283)
T ss_pred HHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHHcCCCEEEEeCCC------CCHHHHHHHHHHHHHHHHHcCCeE
Confidence 55666666677799999987 55445566667778899999994331 11112344445554 3334443
Q ss_pred EE----c-C---C---------CCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 336 IA----N-G---N---------IQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 336 i~----n-G---g---------I~s~~da~~~l~~~Gad~VmiGRa 364 (487)
-+ . | + .++++++.++.+.+|+|.+.++=|
T Consensus 126 E~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiG 171 (283)
T PRK08185 126 EGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIG 171 (283)
T ss_pred EEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccC
Confidence 21 1 1 1 568999999998899999888433
No 412
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=94.32 E-value=0.35 Score=48.76 Aligned_cols=109 Identities=11% Similarity=0.104 Sum_probs=65.4
Q ss_pred CChHHHHHHHHHHhhhccCcEEEEeecc-cccccHHHHHHHHHHcCCcEEEEEcccc-CCCCCCCCCC--C-HHHHHHHH
Q psy7343 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIY-QDVNKTVEYARMLERAGCQLLAVHGRTV-DQRGMNTGLA--S-WEHITAVR 328 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~~iPV~vKiR~~-~d~~~~~e~a~~le~~G~d~I~VhgRt~-~~~g~~~g~~--~-~~~i~~i~ 328 (487)
-.++.+.+.++.|.+.+++||++-+--| ++..+....++.++++|+.+|.|-.... ...|...|.. . -+.+.+|+
T Consensus 61 l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~ 140 (292)
T PRK11320 61 TTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIK 140 (292)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHH
Confidence 3577778888888888999999988665 3555677779999999999999944321 1122222221 1 14444444
Q ss_pred h---hC-CCcEEEcCC--CCC---HHHHHHH---HHhcCCcEEEec
Q psy7343 329 K---AL-TIPVIANGN--IQC---LADVEAC---LAQTGVAGVMTA 362 (487)
Q Consensus 329 ~---~~-~iPVi~nGg--I~s---~~da~~~---l~~~Gad~VmiG 362 (487)
. .. +.+++.+.. ... .+++.+- ..+.|||+|.+-
T Consensus 141 Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~ 186 (292)
T PRK11320 141 AAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPE 186 (292)
T ss_pred HHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEec
Confidence 3 22 333443322 221 3443221 225799999984
No 413
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=94.31 E-value=0.2 Score=47.81 Aligned_cols=88 Identities=24% Similarity=0.364 Sum_probs=65.9
Q ss_pred CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHH
Q psy7343 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACL 351 (487)
Q Consensus 272 iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l 351 (487)
.+++.=+|.. +.++..+.++.+.+.|++.|-|.-|+ +...+.++++++...--+++.|.|.|.+++++++
T Consensus 8 ~~liaVlr~~-~~e~a~~~~~al~~~Gi~~iEit~~t---------~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~ 77 (204)
T TIGR01182 8 AKIVPVIRID-DVDDALPLAKALIEGGLRVLEVTLRT---------PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAV 77 (204)
T ss_pred CCEEEEEecC-CHHHHHHHHHHHHHcCCCEEEEeCCC---------ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHH
Confidence 3455545443 67788999999999999999995432 3345889999887754578889999999999999
Q ss_pred HhcCCcEEEeccccccCccccc
Q psy7343 352 AQTGVAGVMTAEGNLYNPALFT 373 (487)
Q Consensus 352 ~~~Gad~VmiGRa~l~~P~lf~ 373 (487)
+.||+.++. -+ .||.+.+
T Consensus 78 -~aGA~Fivs-P~--~~~~v~~ 95 (204)
T TIGR01182 78 -DAGAQFIVS-PG--LTPELAK 95 (204)
T ss_pred -HcCCCEEEC-CC--CCHHHHH
Confidence 799999853 22 2665543
No 414
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=94.29 E-value=0.79 Score=47.75 Aligned_cols=142 Identities=15% Similarity=0.200 Sum_probs=85.7
Q ss_pred CCCCeeeeec---cCCHHHHHHHHHhhCCc-CcEEEe--ecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCc
Q psy7343 202 EDRPLIIQFC---GNDSKNLTEAAKLAEPH-CDGIDI--NIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVP 273 (487)
Q Consensus 202 ~~~Pv~Vqi~---g~d~~~~~~aa~~~~~~-~d~Idi--N~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iP 273 (487)
.++|++..+. |-+++.+.+.+..+... .|.|-- |+|.+... .+.++.+.+.+.++...+.+ .++
T Consensus 124 ~~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~--------p~~eRv~~v~~av~~a~~eTG~~~~ 195 (364)
T cd08210 124 PERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKDDHGLADQPFA--------PFEERVKACQEAVAEANAETGGRTL 195 (364)
T ss_pred CCCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeecCccccCccCC--------CHHHHHHHHHHHHHHHHhhcCCcce
Confidence 3678865543 78999999988776665 555522 12221110 11233445555555555444 357
Q ss_pred EEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC-CcEEEc----CCCC------
Q psy7343 274 VSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT-IPVIAN----GNIQ------ 342 (487)
Q Consensus 274 V~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~-iPVi~n----GgI~------ 342 (487)
+.+|+ ..+.++..+-++.++++|++++|+.. ...-|..+..+++... +||.+- |-+.
T Consensus 196 y~~Ni--ta~~~em~~ra~~a~~~Ga~~vMv~~----------~~~G~~~~~~l~~~~~~l~i~aHra~~ga~~~~~~~i 263 (364)
T cd08210 196 YAPNV--TGPPTQLLERARFAKEAGAGGVLIAP----------GLTGLDTFRELAEDFDFLPILAHPAFAGAFVSSGDGI 263 (364)
T ss_pred EEEec--CCCHHHHHHHHHHHHHcCCCEEEeec----------ccchHHHHHHHHhcCCCcEEEEccccccccccCCCcc
Confidence 77787 23345777888889999999999921 1122556777777777 888753 2222
Q ss_pred -CHHHHHHHHHhcCCcEEEecc
Q psy7343 343 -CLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 343 -s~~da~~~l~~~Gad~VmiGR 363 (487)
..--..++.+..|+|.++.+.
T Consensus 264 s~~~~~~kl~RlaGad~~~~~~ 285 (364)
T cd08210 264 SHALLFGTLFRLAGADAVIFPN 285 (364)
T ss_pred cHHHHHHHHHHHhCCCEEEeCC
Confidence 112356666668999886543
No 415
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=94.27 E-value=0.31 Score=50.69 Aligned_cols=90 Identities=23% Similarity=0.297 Sum_probs=65.6
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEc-------cc-----cCCC---------------CC---------
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHG-------RT-----VDQR---------------GM--------- 314 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~Vhg-------Rt-----~~~~---------------g~--------- 314 (487)
+.|.+..+-...|.+...+..+..+++|+++|.||- |. .... +.
T Consensus 109 ~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~ 188 (356)
T PF01070_consen 109 GGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENN 188 (356)
T ss_dssp TSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG----
T ss_pred cCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCccccccccccc
Confidence 466777665556777889999999999999999954 11 0000 00
Q ss_pred -------------------CCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 315 -------------------NTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 315 -------------------~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
.....+|+.++++++..++|||.= ||.+.+|++++. +.|+|++.++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivK-gv~~~~da~~~~-~~G~~~i~vs 253 (356)
T PF01070_consen 189 EAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVK-GVLSPEDAKRAV-DAGVDGIDVS 253 (356)
T ss_dssp -CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEE-EE-SHHHHHHHH-HTT-SEEEEE
T ss_pred ccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEE-ecccHHHHHHHH-hcCCCEEEec
Confidence 012237899999999999999985 679999999999 7999999987
No 416
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.27 E-value=0.8 Score=48.61 Aligned_cols=124 Identities=16% Similarity=0.127 Sum_probs=82.4
Q ss_pred cCCHHHHHHHHH-hhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEEeecccccccHH
Q psy7343 212 GNDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTV 288 (487)
Q Consensus 212 g~d~~~~~~aa~-~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~ 288 (487)
+.+++++.+.++ ..++.+..+.+..| .+++.-.+.++++++.++ +.+.+-.--+|+..+..
T Consensus 194 ~~~~~~~~~~a~~~~~~Gf~~~KiKvg----------------~~~~~d~~~v~avRe~vG~~~~L~vDaN~~w~~~~A~ 257 (415)
T cd03324 194 GYSDEKLRRLCKEALAQGFTHFKLKVG----------------ADLEDDIRRCRLAREVIGPDNKLMIDANQRWDVPEAI 257 (415)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCC----------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 446666655444 44444555544332 134544566777888763 33444332346777889
Q ss_pred HHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC---CCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL---TIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~---~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++++.+++.++..+- | + . ...+++..+++++.+ ++||.+.-.+.+..++.++++...+|.+++
T Consensus 258 ~~~~~L~~~~l~~iE-------E-P-~-~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~ 323 (415)
T cd03324 258 EWVKQLAEFKPWWIE-------E-P-T-SPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQI 323 (415)
T ss_pred HHHHHhhccCCCEEE-------C-C-C-CCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEe
Confidence 999999998887663 1 1 1 234678888999888 699988778999999999996666787753
No 417
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=94.26 E-value=0.67 Score=42.97 Aligned_cols=128 Identities=15% Similarity=0.115 Sum_probs=75.5
Q ss_pred CHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc---ccccHHH
Q psy7343 214 DSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ---DVNKTVE 289 (487)
Q Consensus 214 d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~---d~~~~~e 289 (487)
|.+.+.+.++.+.+. .++|.++. +.+..+.+.+... ++||++++.... ...+..+
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------------------~~i~~~~~~~~~~-~~~v~~~v~~~~~~~~~~~~~~ 69 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------------------GYVRLAADALAGS-DVPVIVVVGFPTGLTTTEVKVA 69 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------------------HHHHHHHHHhCCC-CCeEEEEecCCCCCCcHHHHHH
Confidence 677778887776555 55555542 3333333322210 488888773321 0356788
Q ss_pred HHHHHHHcCCcEEEEEccccCCCCCCC--CCCCHHHHHHHHhhC--CCcEEE-c--CCCCCHHHHHHH---HHhcCCcEE
Q psy7343 290 YARMLERAGCQLLAVHGRTVDQRGMNT--GLASWEHITAVRKAL--TIPVIA-N--GNIQCLADVEAC---LAQTGVAGV 359 (487)
Q Consensus 290 ~a~~le~~G~d~I~VhgRt~~~~g~~~--g~~~~~~i~~i~~~~--~iPVi~-n--GgI~s~~da~~~---l~~~Gad~V 359 (487)
.++.+.+.|+|+++++.-.... .+ .....+.++++.+.+ ++|++. | +.-.+.+...++ .+..|+++|
T Consensus 70 ~a~~a~~~Gad~i~v~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~i 146 (201)
T cd00945 70 EVEEAIDLGADEIDVVINIGSL---KEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFI 146 (201)
T ss_pred HHHHHHHcCCCEEEEeccHHHH---hCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEE
Confidence 8899999999999995321100 01 011247777888874 899874 2 222256666554 346799999
Q ss_pred Eecccc
Q psy7343 360 MTAEGN 365 (487)
Q Consensus 360 miGRa~ 365 (487)
=...+.
T Consensus 147 K~~~~~ 152 (201)
T cd00945 147 KTSTGF 152 (201)
T ss_pred EeCCCC
Confidence 776553
No 418
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=94.25 E-value=0.17 Score=48.09 Aligned_cols=78 Identities=23% Similarity=0.298 Sum_probs=58.2
Q ss_pred cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHH
Q psy7343 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLA 352 (487)
Q Consensus 273 PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~ 352 (487)
+++.=+|.. +.++..+.++.+.+.|+..+-|.-|+ +.-.+.++++++...--+++.|.|.|.+++++++
T Consensus 9 ~iiaVir~~-~~~~a~~~~~al~~gGi~~iEiT~~t---------~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~- 77 (196)
T PF01081_consen 9 KIIAVIRGD-DPEDAVPIAEALIEGGIRAIEITLRT---------PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAI- 77 (196)
T ss_dssp SEEEEETTS-SGGGHHHHHHHHHHTT--EEEEETTS---------TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHH-
T ss_pred CEEEEEEcC-CHHHHHHHHHHHHHCCCCEEEEecCC---------ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHH-
Confidence 455555544 67889999999999999999996453 2345888888887765689999999999999999
Q ss_pred hcCCcEEEe
Q psy7343 353 QTGVAGVMT 361 (487)
Q Consensus 353 ~~Gad~Vmi 361 (487)
+.||+.++.
T Consensus 78 ~aGA~FivS 86 (196)
T PF01081_consen 78 AAGAQFIVS 86 (196)
T ss_dssp HHT-SEEEE
T ss_pred HcCCCEEEC
Confidence 789998874
No 419
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=94.25 E-value=0.77 Score=46.27 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=66.5
Q ss_pred ChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh--
Q psy7343 255 DWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA-- 330 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~-- 330 (487)
..+.+..++....+.. ++||.+.+ |-....+.++...+.|.+.||+.|-. +.-.-+.+..+++.+.
T Consensus 59 g~~~~~~~~~~~a~~~~~~VPV~lHL----DHg~~~e~i~~ai~~GftSVMiDgS~------lp~eeNi~~T~~vv~~Ah 128 (288)
T TIGR00167 59 GLGAISAMVKAMSEAYPYGVPVALHL----DHGASEEDCAQAVKAGFSSVMIDGSH------EPFEENIELTKKVVERAH 128 (288)
T ss_pred CHHHHHHHHHHHHHhccCCCcEEEEC----CCCCCHHHHHHHHHcCCCEEEecCCC------CCHHHHHHHHHHHHHHHH
Confidence 3667777777777777 89999998 55545566777778899999994321 1111233444444332
Q ss_pred -CCCcEEEc--------CC---------CCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 331 -LTIPVIAN--------GN---------IQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 331 -~~iPVi~n--------Gg---------I~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+++|-+- ++ .+++++++++.++||+|...++=|
T Consensus 129 ~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiG 180 (288)
T TIGR00167 129 KMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIG 180 (288)
T ss_pred HcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccC
Confidence 35554321 11 568899999999999998887654
No 420
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.22 E-value=0.63 Score=46.65 Aligned_cols=93 Identities=20% Similarity=0.211 Sum_probs=58.7
Q ss_pred HHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CC
Q psy7343 258 LLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TI 333 (487)
Q Consensus 258 ~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~i 333 (487)
-+.+.++.+|+..+ .+|.+-. ++..++.+ +.++|+|.||+.. + +.+.+++..+.+ ..
T Consensus 178 ~i~~av~~~r~~~~~~~kIeVEv------~slee~~e-a~~~gaDiImLDn--------~----s~e~l~~av~~~~~~~ 238 (281)
T PRK06543 178 DLTEALRHVRAQLGHTTHVEVEV------DRLDQIEP-VLAAGVDTIMLDN--------F----SLDDLREGVELVDGRA 238 (281)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEe------CCHHHHHH-HHhcCCCEEEECC--------C----CHHHHHHHHHHhCCCe
Confidence 35566666666653 3455543 34455444 4478999999921 1 233344333322 35
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
.+.++|||+ .+.+.++. .+|+|.+.+|.--..-|++
T Consensus 239 ~leaSGgI~-~~ni~~yA-~tGVD~Is~galths~~~~ 274 (281)
T PRK06543 239 IVEASGNVN-LNTVGAIA-STGVDVISVGALTHSVRAL 274 (281)
T ss_pred EEEEECCCC-HHHHHHHH-hcCCCEEEeCccccCCccc
Confidence 788999995 78888887 7999999999754444544
No 421
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=94.22 E-value=0.47 Score=48.92 Aligned_cols=120 Identities=13% Similarity=0.151 Sum_probs=72.0
Q ss_pred chhhhcChhHHHHHHhcC---------CCCCCeeeeeccC-CHHHHHHHHHhhCCc-CcEEEeecCCCcc-eee----cc
Q psy7343 183 AHQFIADKKLRQEILMST---------PEDRPLIIQFCGN-DSKNLTEAAKLAEPH-CDGIDINIGCPQM-VAK----RG 246 (487)
Q Consensus 183 ~~~Ll~~~~~~~~~l~~~---------~~~~Pv~Vqi~g~-d~~~~~~aa~~~~~~-~d~IdiN~GcP~~-i~~----~g 246 (487)
+.....+++...++++.. ....||.|||..+ +.+++.++++.++++ .|+|-+--.-+.. ... ..
T Consensus 181 ~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~ 260 (335)
T TIGR01036 181 GLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSD 260 (335)
T ss_pred CcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccC
Confidence 333456666666666421 1138999999853 345778888877666 7776532111110 110 00
Q ss_pred Cccc-cccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccc
Q psy7343 247 HYGA-YLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRT 308 (487)
Q Consensus 247 r~G~-~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt 308 (487)
.+|+ ..........+.+..+.+.+ ++|+++-+ .+.+..|+.+.+. +||+.|.| ++.
T Consensus 261 ~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~G----GI~~~~da~e~l~-aGA~~Vqv-~ta 319 (335)
T TIGR01036 261 ETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVG----GISSAQDALEKIR-AGASLLQI-YSG 319 (335)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEEC----CCCCHHHHHHHHH-cCCcHHHh-hHH
Confidence 1121 11222344556666676666 58999987 7888999988887 79999999 553
No 422
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=94.21 E-value=0.34 Score=46.64 Aligned_cols=78 Identities=23% Similarity=0.325 Sum_probs=61.6
Q ss_pred cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHH
Q psy7343 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLA 352 (487)
Q Consensus 273 PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~ 352 (487)
+++.=+|. .+.++..++++.+.+.|++.|-|.-+ .+.-.+.++++++...--+++.|-|.+.++++..+
T Consensus 16 ~~iaV~r~-~~~~~a~~i~~al~~~Gi~~iEitl~---------~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~- 84 (212)
T PRK05718 16 PVVPVIVI-NKLEDAVPLAKALVAGGLPVLEVTLR---------TPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAI- 84 (212)
T ss_pred CEEEEEEc-CCHHHHHHHHHHHHHcCCCEEEEecC---------CccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHH-
Confidence 45544543 37788999999999999999999322 22335788999887765689999999999999999
Q ss_pred hcCCcEEEe
Q psy7343 353 QTGVAGVMT 361 (487)
Q Consensus 353 ~~Gad~Vmi 361 (487)
+.||+.++.
T Consensus 85 ~aGA~Fivs 93 (212)
T PRK05718 85 EAGAQFIVS 93 (212)
T ss_pred HcCCCEEEC
Confidence 799998874
No 423
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=94.19 E-value=0.59 Score=47.03 Aligned_cols=108 Identities=18% Similarity=0.211 Sum_probs=66.3
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCC-CCCCCC-----CC-HHHHHHH
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR-GMNTGL-----AS-WEHITAV 327 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~-g~~~g~-----~~-~~~i~~i 327 (487)
.++...+.++.|...+++||++.+--|.+..+....++.++++|+.+|.|--.+...+ +.+.+. .. -+.+.+|
T Consensus 62 ~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI 141 (285)
T TIGR02320 62 SWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKI 141 (285)
T ss_pred CHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHH
Confidence 4666667788888888999999876665666778889999999999999933321111 111111 11 1333433
Q ss_pred ---Hhh---CCCcEEEcCCC----CCHHHHHHH---HHhcCCcEEEec
Q psy7343 328 ---RKA---LTIPVIANGNI----QCLADVEAC---LAQTGVAGVMTA 362 (487)
Q Consensus 328 ---~~~---~~iPVi~nGgI----~s~~da~~~---l~~~Gad~VmiG 362 (487)
++. .+++|++-=|. ...+++.+- ..+.|||+|++=
T Consensus 142 ~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 142 RAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH 189 (285)
T ss_pred HHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec
Confidence 333 25677765222 234544332 225899999984
No 424
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=94.14 E-value=0.38 Score=49.73 Aligned_cols=107 Identities=19% Similarity=0.231 Sum_probs=72.3
Q ss_pred cccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcc---ccCCCCCC-CCCCCHHHH
Q psy7343 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR---TVDQRGMN-TGLASWEHI 324 (487)
Q Consensus 249 G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgR---t~~~~g~~-~g~~~~~~i 324 (487)
|+..+.|.+++.++ . .++.||.+|--...+.+++...++.+.+.|...|++-=| |.... | ....|+..+
T Consensus 191 ga~~~~n~~LL~~v----a-~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~--y~~~~~dl~ai 263 (352)
T PRK13396 191 GARNMQNFSLLKKV----G-AQDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQ--YTRNTLDLSVI 263 (352)
T ss_pred CcccccCHHHHHHH----H-ccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCC--CCCCCcCHHHH
Confidence 34445677765553 3 358999999766667788899999999999977776444 32211 2 245688999
Q ss_pred HHHHhhCCCcEEEcC----CCCC--HHHHHHHHHhcCCcEEEecc
Q psy7343 325 TAVRKALTIPVIANG----NIQC--LADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 325 ~~i~~~~~iPVi~nG----gI~s--~~da~~~l~~~Gad~VmiGR 363 (487)
..+++..++|||+.- |-++ ..-+...+ ..||||++|=+
T Consensus 264 ~~lk~~~~lPVi~DpsH~~G~sd~~~~~a~AAv-a~GAdGliIE~ 307 (352)
T PRK13396 264 PVLRSLTHLPIMIDPSHGTGKSEYVPSMAMAAI-AAGTDSLMIEV 307 (352)
T ss_pred HHHHHhhCCCEEECCcccCCcHHHHHHHHHHHH-hhCCCeEEEEe
Confidence 999999899998752 2221 12233334 57999999865
No 425
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=94.13 E-value=0.92 Score=47.68 Aligned_cols=122 Identities=13% Similarity=0.163 Sum_probs=80.9
Q ss_pred CHHHHHHHHH-hhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHH
Q psy7343 214 DSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 214 d~~~~~~aa~-~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~ 290 (487)
+++++.+.++ ..++.+..+-+..|- .+++.-.+.++++++.+ ++.+.+-.--+|+..+..++
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikvg~---------------~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~~ 224 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKIGG---------------APLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAY 224 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC---------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHH
Confidence 5565554443 445446555554331 23444456667777776 34455433335677788888
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCC----cEEE
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGV----AGVM 360 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Ga----d~Vm 360 (487)
++.+++.++..|- | + . ...+++..+++++.+++||.+.=.+.+..++.++++...+ |.++
T Consensus 225 ~~~l~~~~~~~iE-------e-P-~-~~~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~ 288 (385)
T cd03326 225 AKALAPYGLRWYE-------E-P-G-DPLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQ 288 (385)
T ss_pred HHHhhCcCCCEEE-------C-C-C-CccCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEE
Confidence 8999888877663 1 1 1 2347889999999999999998899999999999965444 6664
No 426
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=94.05 E-value=1.5 Score=44.74 Aligned_cols=135 Identities=12% Similarity=0.226 Sum_probs=82.3
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCcccc--ccCChHHHHHHHHHHhhhccCcEEEEe-
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAY--LQDDWPLLTNLVSSLRQAVQVPVSCKI- 278 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~--l~~d~~~i~eiv~~v~~~~~iPV~vKi- 278 (487)
..||.+.+. +.+.+...+ .++..|+-| -.. ||. +..|-+...++++..+ ..++.|-+-+
T Consensus 85 ~VPV~lHLDHg~~~e~i~~---ai~~GftSV----------MiD---~S~lp~eeNI~~T~evv~~Ah-~~GvsVEaElG 147 (321)
T PRK07084 85 PIPIVLHLDHGDSFELCKD---CIDSGFSSV----------MID---GSHLPYEENVALTKKVVEYAH-QFDVTVEGELG 147 (321)
T ss_pred CCcEEEECCCCCCHHHHHH---HHHcCCCEE----------Eee---CCCCCHHHHHHHHHHHHHHHH-HcCCeEEEEEe
Confidence 568999987 555544332 222223322 222 222 2445666777776554 4466666532
Q ss_pred eccc---c-------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC-------CCCHHHHHHHHhhC-CCcEEEcCC
Q psy7343 279 RIYQ---D-------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG-------LASWEHITAVRKAL-TIPVIANGN 340 (487)
Q Consensus 279 R~~~---d-------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g-------~~~~~~i~~i~~~~-~iPVi~nGg 340 (487)
+++. + ..+.++..+.++++|+|.+.|.-.|.... |.+ .-+++.+++|++.+ ++|++.-|+
T Consensus 148 ~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~--Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGg 225 (321)
T PRK07084 148 VLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGA--YKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGS 225 (321)
T ss_pred eecCccCCccCcccccCCHHHHHHHHHHhCCCEEeecccccccc--ccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCC
Confidence 2221 1 23578888888999999998733332222 332 35889999999999 799999888
Q ss_pred CCCHHHHHHHHHhcCC
Q psy7343 341 IQCLADVEACLAQTGV 356 (487)
Q Consensus 341 I~s~~da~~~l~~~Ga 356 (487)
=..+++..+.+...|.
T Consensus 226 Sg~~~~~~~~~~~~g~ 241 (321)
T PRK07084 226 SSVPQEYVKTINEYGG 241 (321)
T ss_pred CCCcHHHHHHHHHhcC
Confidence 7777666655555554
No 427
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=94.05 E-value=0.97 Score=47.07 Aligned_cols=97 Identities=19% Similarity=0.229 Sum_probs=67.9
Q ss_pred ChHHHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC
Q psy7343 255 DWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT 332 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~ 332 (487)
+++.-.+.++++++.++ +.+.+-.--+|+..+..++++.+++.++.+|- | + ....+++..+++++...
T Consensus 169 ~~~~d~~~v~~~re~~g~~~~l~~DaN~~~~~~~A~~~~~~l~~~~~~~iE-------e-P--~~~~d~~~~~~l~~~~~ 238 (368)
T TIGR02534 169 DPADDVAHVVAIAKALGDRASVRVDVNAAWDERTALHYLPQLADAGVELIE-------Q-P--TPAENREALARLTRRFN 238 (368)
T ss_pred CcHHHHHHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHhcChhheE-------C-C--CCcccHHHHHHHHHhCC
Confidence 34444556667777763 33333222245666788888899988766542 1 1 12236788899999999
Q ss_pred CcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 333 IPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 333 iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
+||.+.-.+.+..|+.++++..++|.+.+
T Consensus 239 ~pia~dE~~~~~~~~~~~~~~~~~d~~~~ 267 (368)
T TIGR02534 239 VPIMADESVTGPADALAIAKASAADVFAL 267 (368)
T ss_pred CCEEeCcccCCHHHHHHHHHhCCCCEEEE
Confidence 99999888999999999997777888764
No 428
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=93.97 E-value=1.8 Score=44.18 Aligned_cols=149 Identities=21% Similarity=0.316 Sum_probs=82.2
Q ss_pred CchHHHHHHHHhCCccceeccccchhhh-cC---hhHHHHHHh-----cCCCCCCeee-eec-c---CCHHHHHHHHH-h
Q psy7343 160 SELPWRLLSRRYGSHLCYTPMVSAHQFI-AD---KKLRQEILM-----STPEDRPLII-QFC-G---NDSKNLTEAAK-L 224 (487)
Q Consensus 160 td~~fr~i~~~~Ga~l~~t~~v~~~~Ll-~~---~~~~~~~l~-----~~~~~~Pv~V-qi~-g---~d~~~~~~aa~-~ 224 (487)
-|.+...+..+.|++++-+.--.+...+ ++ +--..+++. ......|++| -+- + .++++..+.|. +
T Consensus 43 yD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl 122 (332)
T PLN02424 43 YDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRM 122 (332)
T ss_pred CCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHH
Confidence 4667777788888776432211111001 00 001222221 2234567776 332 3 46777666554 5
Q ss_pred hCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccc--------------c---ccc
Q psy7343 225 AEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQ--------------D---VNK 286 (487)
Q Consensus 225 ~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~--------------d---~~~ 286 (487)
+++. +++|.|-.|. ....+.++.+. ..+|||..-+.+.+ + ...
T Consensus 123 ~~eaGa~aVKlEGg~------------------~~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~ 183 (332)
T PLN02424 123 LKEGGMDAVKLEGGS------------------PSRVTAAKAIV-EAGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVK 183 (332)
T ss_pred HHHhCCcEEEECCCc------------------HHHHHHHHHHH-HcCCCEEEeecccceeehhhcCccccCCCHHHHHH
Confidence 4666 4444443221 11234455555 34899995443311 1 124
Q ss_pred HHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcC
Q psy7343 287 TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANG 339 (487)
Q Consensus 287 ~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nG 339 (487)
..+-++.++++||++|.+-+- .-+..++|.+.++||+|+-|
T Consensus 184 li~dA~ale~AGAf~ivLE~V------------p~~la~~It~~l~IPtIGIG 224 (332)
T PLN02424 184 VVETALALQEAGCFAVVLECV------------PAPVAAAITSALQIPTIGIG 224 (332)
T ss_pred HHHHHHHHHHcCCcEEEEcCC------------cHHHHHHHHHhCCCCEEeec
Confidence 567789999999999988221 23478899999999999754
No 429
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=93.95 E-value=1.3 Score=45.92 Aligned_cols=96 Identities=16% Similarity=0.140 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCC
Q psy7343 256 WPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTI 333 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~i 333 (487)
++.-.+.++++++.++ +.+.+-..-+++..+..++++.+++.|+.+|- + + . ...+++..+++++..++
T Consensus 171 ~~~d~~~v~avr~~~g~~~~l~iDaN~~~~~~~A~~~~~~l~~~~~~~iE-------e-P-~-~~~~~~~~~~l~~~~~~ 240 (365)
T cd03318 171 PADDLAHVEAIAKALGDRASVRVDVNQAWDESTAIRALPRLEAAGVELIE-------Q-P-V-PRENLDGLARLRSRNRV 240 (365)
T ss_pred hHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCcceee-------C-C-C-CcccHHHHHHHHhhcCC
Confidence 3333455666776663 23333221245666778888899988876542 1 1 1 22367889999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
||.+.=.+.+..|+.++++...+|.+++
T Consensus 241 pia~dE~~~~~~~~~~~i~~~~~d~~~~ 268 (365)
T cd03318 241 PIMADESVSGPADAFELARRGAADVFSL 268 (365)
T ss_pred CEEcCcccCCHHHHHHHHHhCCCCeEEE
Confidence 9999878899999999997666788754
No 430
>KOG4175|consensus
Probab=93.92 E-value=1.6 Score=41.30 Aligned_cols=150 Identities=17% Similarity=0.137 Sum_probs=86.1
Q ss_pred CCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCc------ccccc--CChHHHHHHHHHHhhh-ccCcEEEEeeccc
Q psy7343 213 NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHY------GAYLQ--DDWPLLTNLVSSLRQA-VQVPVSCKIRIYQ 282 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~------G~~l~--~d~~~i~eiv~~v~~~-~~iPV~vKiR~~~ 282 (487)
.|.++.+.+.+-+++. .|.||+ |.|..-...++. .-+|+ -..+.+.++++.++.. +.+|++.-+-..+
T Consensus 29 P~v~~T~kilkglq~gG~dIIEL--GvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIiLmgYYNP 106 (268)
T KOG4175|consen 29 PDVSTTAKILKGLQSGGSDIIEL--GVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCPIILMGYYNP 106 (268)
T ss_pred CcHHHHHHHHHHHhcCCcCeEEe--cCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccCcccceeeeecccH
Confidence 4566778888888887 788888 555422111110 11122 2345566666666655 5788877542111
Q ss_pred cc-ccHHHHHHHHHHcCCcEEEE-------------------------Ecc-ccC-----------------CCCCCCCC
Q psy7343 283 DV-NKTVEYARMLERAGCQLLAV-------------------------HGR-TVD-----------------QRGMNTGL 318 (487)
Q Consensus 283 d~-~~~~e~a~~le~~G~d~I~V-------------------------hgR-t~~-----------------~~g~~~g~ 318 (487)
=. --.+.+.+.+.++|+.++.| .+- |.. .+-+.+|.
T Consensus 107 Il~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~adsFiYvVSrmG~TG~ 186 (268)
T KOG4175|consen 107 ILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAADSFIYVVSRMGVTGT 186 (268)
T ss_pred HHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhhcceEEEEEecccccc
Confidence 00 01233444555566666554 110 100 00012221
Q ss_pred C------CHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 319 A------SWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 319 ~------~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
. .-+++.++++.. +.|+-..=||.++|++++.=+- +|||.+|..+.
T Consensus 187 ~~svn~~l~~L~qrvrk~t~dtPlAVGFGvst~EHf~qVgsv--aDGVvvGSkiv 239 (268)
T KOG4175|consen 187 RESVNEKLQSLLQRVRKATGDTPLAVGFGVSTPEHFKQVGSV--ADGVVVGSKIV 239 (268)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceeEeeccCCHHHHHhhhhh--ccceEecHHHH
Confidence 1 126778888888 8899888899999999988633 99999998654
No 431
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=93.89 E-value=2 Score=41.27 Aligned_cols=134 Identities=18% Similarity=0.200 Sum_probs=80.9
Q ss_pred CCCCCeeeeec-c---CCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEE
Q psy7343 201 PEDRPLIIQFC-G---NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSC 276 (487)
Q Consensus 201 ~~~~Pv~Vqi~-g---~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~v 276 (487)
+.+.-|++|.- + .|.....++++.+.+. |. ..+.. ..++.+ +.+++.+++|+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~--------G~-~~~~~---------~~~~~~----~~i~~~~~iPil~ 65 (219)
T cd04729 8 KGGLIVSCQALPGEPLHSPEIMAAMALAAVQG--------GA-VGIRA---------NGVEDI----RAIRARVDLPIIG 65 (219)
T ss_pred cCCeEEEccCCCCCCcCcHHHHHHHHHHHHHC--------CC-eEEEc---------CCHHHH----HHHHHhCCCCEEE
Confidence 44566777765 2 3566777888877766 33 11111 234433 3455557899975
Q ss_pred Eeecccc-----cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHH
Q psy7343 277 KIRIYQD-----VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACL 351 (487)
Q Consensus 277 KiR~~~d-----~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l 351 (487)
-.|.+.+ +....+.++.+.++|+|.|.+...... . -.+....+.++++++..++|++. ++.|.+++....
T Consensus 66 ~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~-~--p~~~~~~~~i~~~~~~g~~~iiv--~v~t~~ea~~a~ 140 (219)
T cd04729 66 LIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP-R--PDGETLAELIKRIHEEYNCLLMA--DISTLEEALNAA 140 (219)
T ss_pred EEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC-C--CCCcCHHHHHHHHHHHhCCeEEE--ECCCHHHHHHHH
Confidence 3322211 112345678889999998877432111 0 01113346777777766688777 788999998877
Q ss_pred HhcCCcEEEec
Q psy7343 352 AQTGVAGVMTA 362 (487)
Q Consensus 352 ~~~Gad~VmiG 362 (487)
+.|+|.+.+.
T Consensus 141 -~~G~d~i~~~ 150 (219)
T cd04729 141 -KLGFDIIGTT 150 (219)
T ss_pred -HcCCCEEEcc
Confidence 6899998763
No 432
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=93.89 E-value=1.1 Score=45.79 Aligned_cols=91 Identities=14% Similarity=0.170 Sum_probs=58.4
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh---CCCcEEE--------cC
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA---LTIPVIA--------NG 339 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~---~~iPVi~--------nG 339 (487)
++||.+.. |-....+.++...++|.+.||+.|-. +.-.-+.+..+++.+. .++.|-+ .+
T Consensus 85 ~VPV~lHL----DHg~~~e~i~~ai~~GftSVMiD~S~------lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed 154 (321)
T PRK07084 85 PIPIVLHL----DHGDSFELCKDCIDSGFSSVMIDGSH------LPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVED 154 (321)
T ss_pred CCcEEEEC----CCCCCHHHHHHHHHcCCCEEEeeCCC------CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccC
Confidence 68999987 55555677788888999999995431 1111233444444332 3444421 11
Q ss_pred C-------CCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 340 N-------IQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 340 g-------I~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+ .++++++.++.++||+|...++=|-....+-
T Consensus 155 ~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~ 193 (321)
T PRK07084 155 EVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYK 193 (321)
T ss_pred CccCcccccCCHHHHHHHHHHhCCCEEeecccccccccc
Confidence 1 5689999999999999988877654444433
No 433
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.84 E-value=0.26 Score=53.53 Aligned_cols=73 Identities=15% Similarity=0.138 Sum_probs=53.6
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCc-EEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIP-VIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iP-Vi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
.+..+.++.|.++|+|.|.| ..+. . ++. ...+.++++++..+.+ .+..|.|.|.++++.++ +.|||++.+|.
T Consensus 241 ~~~~~ra~~Lv~aGvd~i~v-d~a~-g---~~~-~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li-~aGAd~I~vg~ 313 (502)
T PRK07107 241 RDYAERVPALVEAGADVLCI-DSSE-G---YSE-WQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLA-EAGADFVKVGI 313 (502)
T ss_pred hhHHHHHHHHHHhCCCeEee-cCcc-c---ccH-HHHHHHHHHHHhCCCCceEEeccccCHHHHHHHH-HcCCCEEEECC
Confidence 35678888899999999999 3211 1 111 1258899999887532 34559999999999999 79999998864
Q ss_pred c
Q psy7343 364 G 364 (487)
Q Consensus 364 a 364 (487)
|
T Consensus 314 g 314 (502)
T PRK07107 314 G 314 (502)
T ss_pred C
Confidence 3
No 434
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=93.84 E-value=0.53 Score=47.38 Aligned_cols=108 Identities=11% Similarity=0.145 Sum_probs=64.3
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecc-cccccHHHHHHHHHHcCCcEEEEEcccc-CCCCCCCCCC--C-HHHHHHHH-
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIY-QDVNKTVEYARMLERAGCQLLAVHGRTV-DQRGMNTGLA--S-WEHITAVR- 328 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~-~d~~~~~e~a~~le~~G~d~I~VhgRt~-~~~g~~~g~~--~-~~~i~~i~- 328 (487)
..+...+.++.|.+.+++||++-+--| ++..+....++.++++|+.+|+|-..+. +..|...|.. . -+.+.+|+
T Consensus 57 t~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~A 136 (285)
T TIGR02317 57 TLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAA 136 (285)
T ss_pred CHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHH
Confidence 566677777788888899999988665 3455667778999999999999954332 1122222321 1 13444443
Q ss_pred --hhC-CCcEEEcCCCCC-----HHHHHHH---HHhcCCcEEEec
Q psy7343 329 --KAL-TIPVIANGNIQC-----LADVEAC---LAQTGVAGVMTA 362 (487)
Q Consensus 329 --~~~-~iPVi~nGgI~s-----~~da~~~---l~~~Gad~VmiG 362 (487)
+.. +.+++.+..... .+++.+- ..+.|||+|.+-
T Consensus 137 a~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~ 181 (285)
T TIGR02317 137 AVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPE 181 (285)
T ss_pred HHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeC
Confidence 332 334444333222 3443221 225799999983
No 435
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=93.77 E-value=0.32 Score=45.81 Aligned_cols=79 Identities=25% Similarity=0.365 Sum_probs=57.8
Q ss_pred ccccHHHHHHHHHHc---CCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEE
Q psy7343 283 DVNKTVEYARMLERA---GCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359 (487)
Q Consensus 283 d~~~~~e~a~~le~~---G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~V 359 (487)
+.+++.+..+.+... |+=.+-| ++...+ +| ++++.+..+......||+..|||.-.||.+.+. ..|+++|
T Consensus 135 ~~ed~le~Vk~l~~~~~~~lIvLDi-~aVGt~----~G-~~~E~l~~~~~~s~~pVllGGGV~g~Edlel~~-~~Gv~gv 207 (229)
T COG1411 135 WLEDFLETVKDLNYRRDPGLIVLDI-GAVGTK----SG-PDYELLTKVLELSEHPVLLGGGVGGMEDLELLL-GMGVSGV 207 (229)
T ss_pred CchhHHHHHHHHhccCCCCeEEEEc-cccccc----cC-CCHHHHHHHHHhccCceeecCCcCcHHHHHHHh-cCCCcee
Confidence 455666666665543 3333334 332222 22 589999999999999999999999999999888 6999999
Q ss_pred EeccccccC
Q psy7343 360 MTAEGNLYN 368 (487)
Q Consensus 360 miGRa~l~~ 368 (487)
.+||++...
T Consensus 208 LvaTalh~G 216 (229)
T COG1411 208 LVATALHEG 216 (229)
T ss_pred eehhhhhcC
Confidence 999986543
No 436
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=93.75 E-value=0.16 Score=54.68 Aligned_cols=101 Identities=22% Similarity=0.312 Sum_probs=65.8
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
.+..+.++.|.+.|+|.|.+..- . . .+ ....+.++++++.. ++|||+ |.+.|.+.++.++ +.|||+|-||=
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a-~-g---~~-~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~-~~G~d~i~vg~ 295 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTA-H-G---HQ-VKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLL-EAGANIIKVGV 295 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCC-C-C---Cc-HHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHH-HhCCCEEEECC
Confidence 36778889999999999998221 1 0 11 12347899999875 899999 8899999999999 79999987554
Q ss_pred c--cccCcccccCCCCCcHHHHHHHHHHHHHc
Q psy7343 364 G--NLYNPALFTGQTRPAWELASEYLDLVAQY 393 (487)
Q Consensus 364 a--~l~~P~lf~~~~~~~~~~~~~~l~~~~~~ 393 (487)
| -.-+-..+.+...+....+.+..+.+.++
T Consensus 296 g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~ 327 (475)
T TIGR01303 296 GPGAMCTTRMMTGVGRPQFSAVLECAAEARKL 327 (475)
T ss_pred cCCccccCccccCCCCchHHHHHHHHHHHHHc
Confidence 3 33333333333333333333333333444
No 437
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=93.74 E-value=0.4 Score=45.89 Aligned_cols=81 Identities=19% Similarity=0.251 Sum_probs=63.2
Q ss_pred CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCc-EEEcCCCCCHHHHHHH
Q psy7343 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIP-VIANGNIQCLADVEAC 350 (487)
Q Consensus 272 iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iP-Vi~nGgI~s~~da~~~ 350 (487)
.+++.=+|.. +.++..+.++.+.+.|+..+-|.- +++...+.++++++....+ +++.|.|.+.+++...
T Consensus 10 ~~~~~v~r~~-~~~~~~~~~~a~~~gGi~~iEvt~---------~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a 79 (206)
T PRK09140 10 LPLIAILRGI-TPDEALAHVGALIEAGFRAIEIPL---------NSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRL 79 (206)
T ss_pred CCEEEEEeCC-CHHHHHHHHHHHHHCCCCEEEEeC---------CCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHH
Confidence 3455555543 667889999999999999999932 2333456888888877654 7899999999999999
Q ss_pred HHhcCCcEEEecc
Q psy7343 351 LAQTGVAGVMTAE 363 (487)
Q Consensus 351 l~~~Gad~VmiGR 363 (487)
+ +.|+|+++.+-
T Consensus 80 ~-~aGA~fivsp~ 91 (206)
T PRK09140 80 A-DAGGRLIVTPN 91 (206)
T ss_pred H-HcCCCEEECCC
Confidence 9 79999999863
No 438
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=93.67 E-value=0.44 Score=49.13 Aligned_cols=109 Identities=17% Similarity=0.249 Sum_probs=66.3
Q ss_pred HHHHHHHHHhhhccCcEEEEeec---cc-----------ccccHHHHHHHHHH--cCCcEEEEEccccCCC---C-----
Q psy7343 258 LLTNLVSSLRQAVQVPVSCKIRI---YQ-----------DVNKTVEYARMLER--AGCQLLAVHGRTVDQR---G----- 313 (487)
Q Consensus 258 ~i~eiv~~v~~~~~iPV~vKiR~---~~-----------d~~~~~e~a~~le~--~G~d~I~VhgRt~~~~---g----- 313 (487)
.+.++.++.+ ..++|+++-+-. +. +.+.....++.+.+ .|+|.+-+ .-+.... |
T Consensus 144 ~l~rv~~ec~-~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKv-e~p~~~~~veg~~~~~ 221 (340)
T PRK12858 144 FVERVGAECR-ANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKV-EVPVDMKFVEGFDGFE 221 (340)
T ss_pred HHHHHHHHHH-HcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEe-eCCCCccccccccccc
Confidence 3455555443 348998885211 11 11245667777774 99999987 2111100 0
Q ss_pred -CCCCCCCHHHHHHHHhhCCCcEEE-cCCCCCHHHHHHHHH---hcCC--cEEEeccccccCc
Q psy7343 314 -MNTGLASWEHITAVRKALTIPVIA-NGNIQCLADVEACLA---QTGV--AGVMTAEGNLYNP 369 (487)
Q Consensus 314 -~~~g~~~~~~i~~i~~~~~iPVi~-nGgI~s~~da~~~l~---~~Ga--d~VmiGRa~l~~P 369 (487)
-|+...-.+.++++.+..++|++. +||+ +.+++.+.++ +.|+ .||.+||....++
T Consensus 222 ~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~-~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq~~ 283 (340)
T PRK12858 222 EAYTQEEAFKLFREQSDATDLPFIFLSAGV-SPELFRRTLEFACEAGADFSGVLCGRATWQDG 283 (340)
T ss_pred ccccHHHHHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHHHHHHcCCCccchhhhHHHHhhh
Confidence 011111125677888888999876 7777 6677766653 3789 9999999887775
No 439
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=93.63 E-value=0.94 Score=46.69 Aligned_cols=140 Identities=19% Similarity=0.196 Sum_probs=89.0
Q ss_pred CCCeeeeec-cCCHHHHHHHHH-hhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEEe
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKI 278 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~-~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKi 278 (487)
..|+..... ..+++++.+.++ ..++.|..+-+..|.. . ..+ ..+.+.-.+.++++++.++ +.+.+-.
T Consensus 108 ~i~~y~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~-~--~~~------~~~~~~d~~~v~avr~~~g~~~~l~vDa 178 (341)
T cd03327 108 KIPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYG-P--SDG------HAGLRKNVELVRAIREAVGYDVDLMLDC 178 (341)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC-C--Ccc------hHHHHHHHHHHHHHHHHhCCCCcEEEEC
Confidence 345544432 346777755444 4555577766655430 0 000 0234555667777887763 4444433
Q ss_pred ecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcE
Q psy7343 279 RIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAG 358 (487)
Q Consensus 279 R~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~ 358 (487)
--.|+..+...+++.++++++.++- | + . ...+++..+++++.+++||.+.=.+.+..++.++++...+|.
T Consensus 179 n~~~~~~~A~~~~~~l~~~~~~~iE-------e-P-~-~~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~ 248 (341)
T cd03327 179 YMSWNLNYAIKMARALEKYELRWIE-------E-P-L-IPDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDI 248 (341)
T ss_pred CCCCCHHHHHHHHHHhhhcCCcccc-------C-C-C-CccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCE
Confidence 2246667788888888888776552 1 1 1 234688899999999999999778899999999997667787
Q ss_pred EEe
Q psy7343 359 VMT 361 (487)
Q Consensus 359 Vmi 361 (487)
+++
T Consensus 249 i~~ 251 (341)
T cd03327 249 LQP 251 (341)
T ss_pred Eec
Confidence 764
No 440
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=93.62 E-value=0.71 Score=47.97 Aligned_cols=42 Identities=19% Similarity=0.491 Sum_probs=38.1
Q ss_pred CCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 319 ASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 319 ~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
..|+.++++++..+.|||.- ||.+.+|++++. +.|+|+|.++
T Consensus 223 ~~w~~i~~ir~~~~~pviiK-gV~~~eda~~a~-~~G~d~I~VS 264 (361)
T cd04736 223 FNWQDLRWLRDLWPHKLLVK-GIVTAEDAKRCI-ELGADGVILS 264 (361)
T ss_pred CCHHHHHHHHHhCCCCEEEe-cCCCHHHHHHHH-HCCcCEEEEC
Confidence 47899999999999999996 599999999999 7899999875
No 441
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=93.55 E-value=1.6 Score=41.69 Aligned_cols=139 Identities=19% Similarity=0.336 Sum_probs=82.7
Q ss_pred CCCCeeeeec---c---CCHHHHHHHHH---hhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc
Q psy7343 202 EDRPLIIQFC---G---NDSKNLTEAAK---LAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ 271 (487)
Q Consensus 202 ~~~Pv~Vqi~---g---~d~~~~~~aa~---~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~ 271 (487)
.+.|+-|=|| | .+.+++..+.+ .+.+. .|++-+ || .+..+ .-|.+.+.+++++.+ +
T Consensus 49 ~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~Vf--G~---L~~dg------~iD~~~~~~Li~~a~---~ 114 (201)
T PF03932_consen 49 VDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVF--GA---LTEDG------EIDEEALEELIEAAG---G 114 (201)
T ss_dssp TTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE-------BETTS------SB-HHHHHHHHHHHT---T
T ss_pred cCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEE--Ee---ECCCC------CcCHHHHHHHHHhcC---C
Confidence 4578888777 2 35555554433 34444 565544 44 11222 147888888887654 7
Q ss_pred CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHH
Q psy7343 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEA 349 (487)
Q Consensus 272 iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~ 349 (487)
.|++.. |..+...+..+..+.+.+.|++.|.-||..... ....+.++++.+.. ++.|+..|||+. +.+.+
T Consensus 115 ~~~tFH-RAfD~~~d~~~al~~L~~lG~~rVLTSGg~~~a------~~g~~~L~~lv~~a~~~i~Im~GgGv~~-~nv~~ 186 (201)
T PF03932_consen 115 MPVTFH-RAFDEVPDPEEALEQLIELGFDRVLTSGGAPTA------LEGIENLKELVEQAKGRIEIMPGGGVRA-ENVPE 186 (201)
T ss_dssp SEEEE--GGGGGSSTHHHHHHHHHHHT-SEEEESTTSSST------TTCHHHHHHHHHHHTTSSEEEEESS--T-TTHHH
T ss_pred CeEEEe-CcHHHhCCHHHHHHHHHhcCCCEEECCCCCCCH------HHHHHHHHHHHHHcCCCcEEEecCCCCH-HHHHH
Confidence 788884 555556678888899999999999886653211 12356666665543 688999999974 67888
Q ss_pred HHHhcCCcEEEec
Q psy7343 350 CLAQTGVAGVMTA 362 (487)
Q Consensus 350 ~l~~~Gad~VmiG 362 (487)
+++++|+..+-.+
T Consensus 187 l~~~tg~~~~H~s 199 (201)
T PF03932_consen 187 LVEETGVREIHGS 199 (201)
T ss_dssp HHHHHT-SEEEET
T ss_pred HHHhhCCeEEeec
Confidence 8877999877654
No 442
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=93.54 E-value=1.3 Score=43.74 Aligned_cols=132 Identities=12% Similarity=0.156 Sum_probs=79.5
Q ss_pred CCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEEeec
Q psy7343 203 DRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIRI 280 (487)
Q Consensus 203 ~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR~ 280 (487)
..|+..-+...+++...++.+..+..+..+-+..|- .+++.-.+.++++++.++ +.+.+-.--
T Consensus 72 ~v~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~---------------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~ 136 (263)
T cd03320 72 RIPVNALLPAGDAAALGEAKAAYGGGYRTVKLKVGA---------------TSFEEDLARLRALREALPADAKLRLDANG 136 (263)
T ss_pred CcceeEEecCCCHHHHHHHHHHHhCCCCEEEEEECC---------------CChHHHHHHHHHHHHHcCCCCeEEEeCCC
Confidence 345555555555544444444444445554443221 234444556666777653 333332212
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 281 YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 281 ~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
+|+..+...+++.+++.++.+|- | + .. ..+++..++++ .++||.+.=.+.+..|+.++++...+|.++
T Consensus 137 ~w~~~~A~~~~~~l~~~~i~~iE-------q-P-~~-~~d~~~~~~l~--~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~ 204 (263)
T cd03320 137 GWSLEEALAFLEALAAGRIEYIE-------Q-P-LP-PDDLAELRRLA--AGVPIALDESLRRLDDPLALAAAGALGALV 204 (263)
T ss_pred CCCHHHHHHHHHhhcccCCceEE-------C-C-CC-hHHHHHHHHhh--cCCCeeeCCccccccCHHHHHhcCCCCEEE
Confidence 45666778888888887777653 1 1 11 23566676766 789999988899999999999666678776
Q ss_pred e
Q psy7343 361 T 361 (487)
Q Consensus 361 i 361 (487)
+
T Consensus 205 ~ 205 (263)
T cd03320 205 L 205 (263)
T ss_pred E
Confidence 4
No 443
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=93.52 E-value=0.58 Score=44.36 Aligned_cols=177 Identities=18% Similarity=0.267 Sum_probs=90.9
Q ss_pred CCCchHHHHHHHHhCCccceeccccchhhhcChhHHHHHHhcCCCCCCeeeeec-cCCHHHHHHHHHhhCCc-CcEEEee
Q psy7343 158 DASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFC-GNDSKNLTEAAKLAEPH-CDGIDIN 235 (487)
Q Consensus 158 ~~td~~fr~i~~~~Ga~l~~t~~v~~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~-g~d~~~~~~aa~~~~~~-~d~IdiN 235 (487)
|+++..=...+.++|++.+.--+...+.=.-+++...++....+ |-.|=++ ..++++..+. ++++ .|.|+||
T Consensus 5 Gi~~~~da~~~~~~g~d~~Gfi~~~~S~R~v~~~~a~~l~~~~~---~~~VgVf~~~~~~~I~~~---~~~~~ld~vQLH 78 (197)
T PF00697_consen 5 GITRPEDARLAAELGADYLGFIFYPKSPRYVSPDQARELVSAVP---PKIVGVFVNQSPEEILEI---VEELGLDVVQLH 78 (197)
T ss_dssp ---SHHHHHHHHHHTSSEEEEE--TTCTTB--HHHHHHHHCCSS---SSEEEEESSS-HHHHHHH---HHHCTESEEEE-
T ss_pred CCCcHHHHHHHHHcCCCEEeeecCCCCCCccCHHHHHHHHHhcC---CCEEEEEcCCCHHHHHHH---HHHcCCCEEEEC
Confidence 44444333456677875532211111111223445556654333 2144444 3344544444 4444 4555554
Q ss_pred cCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcC-CcEEEEEccccCCCCC
Q psy7343 236 IGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAG-CQLLAVHGRTVDQRGM 314 (487)
Q Consensus 236 ~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G-~d~I~VhgRt~~~~g~ 314 (487)
|. ...+. .+.++. ++|++-.+++..+.. ..+.+..+. +|++.+.++ .|+
T Consensus 79 ----------G~------e~~e~----~~~l~~--~~~vi~~~~v~~~~~----~~~~~~~~~~~d~~LlD~~----~Gg 128 (197)
T PF00697_consen 79 ----------GD------ESPEY----IKLLRA--GLPVIKAIHVDKDID----LLDYLERYESVDYFLLDSG----SGG 128 (197)
T ss_dssp ----------SG------G-HHH----HHHHHT--TSEEEEEEEESSCHS----CCHHCHCSTT-SEEEEESS----STS
T ss_pred ----------CC------CCHHH----HHHhhc--CceEEEEEEeCCccc----hHHHHHhcccccEEeEccC----CCc
Confidence 42 12222 223332 578888776664443 222233333 499999732 222
Q ss_pred CCCCCCHHHHHHHHhh-CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 315 NTGLASWEHITAVRKA-LTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 315 ~~g~~~~~~i~~i~~~-~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
..-..+|+.++.+.+. .+.|++.+|||+ ++.+.++++..+..||-+..|.=.+|-.
T Consensus 129 tG~~~dw~~~~~~~~~~~~~p~iLAGGl~-p~NV~~ai~~~~p~gvDvsSGvE~~pG~ 185 (197)
T PF00697_consen 129 TGKTFDWSLLKKIVESYSPKPVILAGGLN-PENVREAIRQVRPYGVDVSSGVETSPGV 185 (197)
T ss_dssp SSS---GGGGCCCHHT-GTSTEEEESS---TTTHHHHHHHC--SEEEESGGGEEETTE
T ss_pred CCcccCHHHhhhhhhhcccCcEEEEcCCC-hHHHHHHHHhcCceEEEeCCccccCCCC
Confidence 2234689988888764 389999999995 6788888877899999999998888766
No 444
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=93.50 E-value=1.2 Score=44.06 Aligned_cols=91 Identities=25% Similarity=0.308 Sum_probs=63.5
Q ss_pred ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 285 NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 285 ~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+..++++.+++.|+++|.|.. ... ++.| .++.+..+++.+++||...-=|-++-++.+.. ..|||+|.+=-+
T Consensus 68 ~d~~~~a~~y~~~GA~aiSVlT--e~~--~F~G--s~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~-~~GADaVLLI~~ 140 (254)
T PF00218_consen 68 FDPAEIAKAYEEAGAAAISVLT--EPK--FFGG--SLEDLRAVRKAVDLPVLRKDFIIDPYQIYEAR-AAGADAVLLIAA 140 (254)
T ss_dssp -SHHHHHHHHHHTT-SEEEEE----SC--CCHH--HHHHHHHHHHHSSS-EEEES---SHHHHHHHH-HTT-SEEEEEGG
T ss_pred CCHHHHHHHHHhcCCCEEEEEC--CCC--CCCC--CHHHHHHHHHHhCCCcccccCCCCHHHHHHHH-HcCCCEeehhHH
Confidence 4889999999999999999932 111 2333 57889999999999999999999999999988 799999987666
Q ss_pred cccCcccccCCCCCcHHHHHHHHHHHHHcC
Q psy7343 365 NLYNPALFTGQTRPAWELASEYLDLVAQYP 394 (487)
Q Consensus 365 ~l~~P~lf~~~~~~~~~~~~~~l~~~~~~~ 394 (487)
++.+ +.+.++++++..++
T Consensus 141 ~L~~------------~~l~~l~~~a~~lG 158 (254)
T PF00218_consen 141 ILSD------------DQLEELLELAHSLG 158 (254)
T ss_dssp GSGH------------HHHHHHHHHHHHTT
T ss_pred hCCH------------HHHHHHHHHHHHcC
Confidence 6554 23345555555554
No 445
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=93.40 E-value=0.92 Score=45.77 Aligned_cols=92 Identities=18% Similarity=0.198 Sum_probs=57.1
Q ss_pred HHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcE
Q psy7343 259 LTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPV 335 (487)
Q Consensus 259 i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPV 335 (487)
+.+.++.+++.. ..+|.+-. ++..++ ..+.++|+|.|++. . + ..+.++++.+.. ++.+
T Consensus 195 i~~av~~~r~~~~~~kIeVEv------~sleea-~ea~~~gaDiI~LD-n-------~----s~e~~~~av~~~~~~~~i 255 (296)
T PRK09016 195 IRQAVEKAFWLHPDVPVEVEV------ENLDEL-DQALKAGADIIMLD-N-------F----TTEQMREAVKRTNGRALL 255 (296)
T ss_pred HHHHHHHHHHhCCCCCEEEEe------CCHHHH-HHHHHcCCCEEEeC-C-------C----ChHHHHHHHHhhcCCeEE
Confidence 344455555443 34555544 344444 44556899999992 1 1 123344433322 6788
Q ss_pred EEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 336 IANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 336 i~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
.++|||+ .+.+.++- .+|+|.+.+|.-...-|++
T Consensus 256 eaSGGI~-~~ni~~yA-~tGVD~Is~galthsa~~l 289 (296)
T PRK09016 256 EVSGNVT-LETLREFA-ETGVDFISVGALTKHVQAL 289 (296)
T ss_pred EEECCCC-HHHHHHHH-hcCCCEEEeCccccCCCcc
Confidence 9999995 78888887 7999999999754444544
No 446
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=93.38 E-value=2.5 Score=43.59 Aligned_cols=142 Identities=14% Similarity=0.134 Sum_probs=79.3
Q ss_pred CCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-ecc
Q psy7343 204 RPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-RIY 281 (487)
Q Consensus 204 ~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R~~ 281 (487)
.||.+.+. +.+.+...++ +...|+-|=+..+. .. +......+..|.+...++++..+ ..++.|-+-+ +++
T Consensus 74 VPValHLDHg~~~e~i~~A---i~~GFtSVMiDgS~-l~---~~~~~~p~eENI~~Tkevve~Ah-~~GvsVEaELG~ig 145 (347)
T TIGR01521 74 IPVVMHQDHGNSPATCQRA---IQLGFTSVMMDGSL-RE---DAKTPADYDYNVRVTAEVVAFAH-AVGASVEGELGCLG 145 (347)
T ss_pred CcEEEECCCCCCHHHHHHH---HHcCCCEEeecCcC-Cc---ccCCCCCHHHHHHHHHHHHHHHH-HcCCeEEEEeeecc
Confidence 69999987 5565543333 33333322222111 00 00001123445666777766544 3466655532 121
Q ss_pred c---------c-------------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC---C----CCHHHHHHHHhhC-
Q psy7343 282 Q---------D-------------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG---L----ASWEHITAVRKAL- 331 (487)
Q Consensus 282 ~---------d-------------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g---~----~~~~~i~~i~~~~- 331 (487)
. | ..+..++.+..+++|+|.+.|.=.|.-.. |.+ + -+++.+++|++.+
T Consensus 146 g~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~--Yk~~~~p~~~~Ld~~rL~eI~~~v~ 223 (347)
T TIGR01521 146 SLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFVKKTKVDALAVAIGTSHGA--YKFTRKPTGEVLAIQRIEEIHARLP 223 (347)
T ss_pred cccccccccccCcccccccchhhcCCCHHHHHHHHHHHCcCEEehhcccccCC--cCCCCCCChhhcCHHHHHHHHccCC
Confidence 0 0 12567888888999999998732332222 433 1 5789999999999
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcC
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTG 355 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~G 355 (487)
++|++.-|+=..+++..+.+.++|
T Consensus 224 ~vPLVLHGgSG~p~~~~~~~~~~~ 247 (347)
T TIGR01521 224 DTHLVMHGSSSVPQEWLDIINEYG 247 (347)
T ss_pred CCCEEEeCCCCCchHhhHHHHhhc
Confidence 799998888777654444444444
No 447
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=93.37 E-value=1.2 Score=46.20 Aligned_cols=92 Identities=10% Similarity=0.128 Sum_probs=66.9
Q ss_pred HHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE
Q psy7343 260 TNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA 337 (487)
Q Consensus 260 ~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~ 337 (487)
.+.++++++.++ +.+.+-..-.|+.++...+++.+++.++..+- | + . ...+++..+++++..++||.+
T Consensus 150 ~~~v~avre~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~iE-------e-P-~-~~~d~~~~~~L~~~~~~pia~ 219 (361)
T cd03322 150 PKLFEAVREKFGFEFHLLHDVHHRLTPNQAARFGKDVEPYRLFWME-------D-P-T-PAENQEAFRLIRQHTATPLAV 219 (361)
T ss_pred HHHHHHHHhccCCCceEEEECCCCCCHHHHHHHHHHhhhcCCCEEE-------C-C-C-CcccHHHHHHHHhcCCCCEEe
Confidence 455677777763 44544333346677788888889888877663 1 1 1 234688899999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 338 NGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 338 nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
.=.+.+..++.++++...+|.+++
T Consensus 220 gE~~~~~~~~~~~i~~~a~di~~~ 243 (361)
T cd03322 220 GEVFNSIWDWQNLIQERLIDYIRT 243 (361)
T ss_pred ccCCcCHHHHHHHHHhCCCCEEec
Confidence 778899999999996666777754
No 448
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.30 E-value=1 Score=45.43 Aligned_cols=91 Identities=14% Similarity=0.135 Sum_probs=56.9
Q ss_pred HHHHHHHhhhcc-CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEE
Q psy7343 260 TNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVI 336 (487)
Q Consensus 260 ~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi 336 (487)
.+.++.+++... .+|.+- .++..++ +.+.++|+|.||+.. + ..+.+++..+.+ ++.+.
T Consensus 193 ~~av~~~r~~~~~~kIeVE------vetleea-~eA~~aGaDiImLDn--------m----spe~l~~av~~~~~~~~lE 253 (294)
T PRK06978 193 GAALDAAFALNAGVPVQIE------VETLAQL-ETALAHGAQSVLLDN--------F----TLDMMREAVRVTAGRAVLE 253 (294)
T ss_pred HHHHHHHHHhCCCCcEEEE------cCCHHHH-HHHHHcCCCEEEECC--------C----CHHHHHHHHHhhcCCeEEE
Confidence 445555554322 334443 3344444 445579999999921 1 223344433332 56788
Q ss_pred EcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 337 ~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
++|||+ .+.+.++. .+|+|.+.+|.--..-|++
T Consensus 254 aSGGIt-~~ni~~yA-~tGVD~IS~galthsa~~l 286 (294)
T PRK06978 254 VSGGVN-FDTVRAFA-ETGVDRISIGALTKDVRAT 286 (294)
T ss_pred EECCCC-HHHHHHHH-hcCCCEEEeCccccCCccc
Confidence 999995 78888887 7999999999765555655
No 449
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.29 E-value=0.53 Score=45.30 Aligned_cols=78 Identities=12% Similarity=0.094 Sum_probs=61.3
Q ss_pred CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCC---cEEEcCCCCCHHHHH
Q psy7343 272 VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTI---PVIANGNIQCLADVE 348 (487)
Q Consensus 272 iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~i---PVi~nGgI~s~~da~ 348 (487)
.+++.=+|.. +.++...+++.+.+.|+..+-|.-|+ +.-.+.++++++..+- -+++.|-|.|.++++
T Consensus 13 ~~vi~vir~~-~~~~a~~~~~al~~~Gi~~iEit~~~---------~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~ 82 (213)
T PRK06552 13 NGVVAVVRGE-SKEEALKISLAVIKGGIKAIEVTYTN---------PFASEVIKELVELYKDDPEVLIGAGTVLDAVTAR 82 (213)
T ss_pred CCEEEEEECC-CHHHHHHHHHHHHHCCCCEEEEECCC---------ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHH
Confidence 3455545443 77789999999999999999995442 3345889999887632 378999999999999
Q ss_pred HHHHhcCCcEEE
Q psy7343 349 ACLAQTGVAGVM 360 (487)
Q Consensus 349 ~~l~~~Gad~Vm 360 (487)
+.+ +.|++.++
T Consensus 83 ~a~-~aGA~Fiv 93 (213)
T PRK06552 83 LAI-LAGAQFIV 93 (213)
T ss_pred HHH-HcCCCEEE
Confidence 999 79999988
No 450
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=93.24 E-value=13 Score=40.00 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=46.8
Q ss_pred HcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 296 RAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 296 ~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
..++|++.+.. ..|+..-..||..+... ...|++.+||++ ++.+.+++ ..+..||-+.+|.=..|.
T Consensus 372 ~~~~d~~LlDs----~~GGtG~~~DW~~l~~~---~~~p~iLAGGL~-peNV~~ai-~~~P~gVDVsSGVE~~pG 437 (454)
T PRK09427 372 LQHVDRYLLDN----GQGGTGQTFDWSLLPGQ---SLDNVLLAGGLN-PDNCQQAA-QLGCAGLDFNSGVESAPG 437 (454)
T ss_pred hcCCCEEEEcC----CCCCCCCccChHHhhhc---ccCCEEEECCCC-HHHHHHHH-hcCCCEEEeCCcccCCCC
Confidence 34689999964 11222234578776532 267999999995 77777777 578999999999876664
No 451
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=93.21 E-value=0.5 Score=47.31 Aligned_cols=97 Identities=12% Similarity=0.139 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh-hCCCc
Q psy7343 257 PLLTNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK-ALTIP 334 (487)
Q Consensus 257 ~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~-~~~iP 334 (487)
+.+.+.++.+|+.. ..+|.+-. ++.++ ++.+.++|+|.|++|.-+.+ ...+.++.+++ ..++.
T Consensus 173 ~~i~~av~~~r~~~~~~kIeVEv------~tlee-a~ea~~~GaDiI~lDn~~~e--------~l~~~v~~l~~~~~~~~ 237 (277)
T TIGR01334 173 FDWGGAIGRLKQTAPERKITVEA------DTIEQ-ALTVLQASPDILQLDKFTPQ--------QLHHLHERLKFFDHIPT 237 (277)
T ss_pred ccHHHHHHHHHHhCCCCCEEEEC------CCHHH-HHHHHHcCcCEEEECCCCHH--------HHHHHHHHHhccCCCEE
Confidence 35667777777654 34455543 34444 44455799999999632211 11234444432 23677
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
+.++|||+ .+.+.++. .+|+|.+.+|--..+.|-
T Consensus 238 leasGGI~-~~ni~~ya-~~GvD~is~gal~~a~~~ 271 (277)
T TIGR01334 238 LAAAGGIN-PENIADYI-EAGIDLFITSAPYYAAPC 271 (277)
T ss_pred EEEECCCC-HHHHHHHH-hcCCCEEEeCcceecCcc
Confidence 89999995 78888887 799999999975445443
No 452
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=93.16 E-value=1.1 Score=46.75 Aligned_cols=123 Identities=20% Similarity=0.187 Sum_probs=83.5
Q ss_pred CHHHHHHHHHhhCC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc--CcEEEEeecccccccHHHH
Q psy7343 214 DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 214 d~~~~~~aa~~~~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~ 290 (487)
.++...++++.+.+ .++.+-+..|++. .+.-.+.++++|++++ +.+.+-.--+|+..+...+
T Consensus 143 ~~e~~~~~~~~~~~~G~~~~Klk~g~~~---------------~~~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~~ 207 (372)
T COG4948 143 PEEMAAEAARALVELGFKALKLKVGVGD---------------GDEDLERVRALREAVGDDVRLMVDANGGWTLEEAIRL 207 (372)
T ss_pred CHHHHHHHHHHHHhcCCceEEecCCCCc---------------hHHHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHHH
Confidence 46667777776664 4777777766632 1133455666777764 3444432224556667888
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
++.+++.++.++- | -..+-+.+..+++++.+.+||.+.=.+.|..|+.++++...+|.|++
T Consensus 208 ~~~l~~~~l~~iE-------e---P~~~~d~~~~~~l~~~~~~PIa~gEs~~~~~~~~~l~~~~a~div~~ 268 (372)
T COG4948 208 ARALEEYGLEWIE-------E---PLPPDDLEGLRELRAATSTPIAAGESVYTRWDFRRLLEAGAVDIVQP 268 (372)
T ss_pred HHHhcccCcceEE-------C---CCCccCHHHHHHHHhcCCCCEecCcccccHHHHHHHHHcCCCCeecC
Confidence 8999988866552 1 11234678899999988899999999999999999996555777753
No 453
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=93.15 E-value=4.3 Score=38.68 Aligned_cols=128 Identities=19% Similarity=0.180 Sum_probs=76.9
Q ss_pred CCCeeeeec-c---CCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe
Q psy7343 203 DRPLIIQFC-G---NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI 278 (487)
Q Consensus 203 ~~Pv~Vqi~-g---~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi 278 (487)
..-|++|=- + .+++-+..+|+.+++. |. ..+... -+.+ ++++++.+++||+.=+
T Consensus 16 glIVSCQal~~~pl~~~~iv~~mA~Aa~~g--------GA-vgiR~~------------gv~d-Ikai~~~v~vPIIGIi 73 (229)
T COG3010 16 GLIVSCQALPGEPLDSPEIVAAMALAAEQG--------GA-VGIRIE------------GVED-IKAIRAVVDVPIIGII 73 (229)
T ss_pred CeEEEeecCCCCCCcchhHHHHHHHHHHhC--------Cc-ceEeec------------chhh-HHHHHhhCCCCeEEEE
Confidence 445667733 2 3455666777777776 33 121111 1222 3447788899998855
Q ss_pred eccc-c----cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHh
Q psy7343 279 RIYQ-D----VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQ 353 (487)
Q Consensus 279 R~~~-d----~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~ 353 (487)
.-.. + +.-+.+-.+.|.++|++-|.+.+ |..++ ..| ..-+.+++ .+..+.-.+ -|+.|.++...+. +
T Consensus 74 Krd~~~s~v~ITptlkeVd~L~~~Ga~IIA~Da-T~R~R--P~~-~~~~~i~~-~k~~~~l~M--AD~St~ee~l~a~-~ 145 (229)
T COG3010 74 KRDYPDSPVRITPTLKEVDALAEAGADIIAFDA-TDRPR--PDG-DLEELIAR-IKYPGQLAM--ADCSTFEEGLNAH-K 145 (229)
T ss_pred ecCCCCCCceecccHHHHHHHHHCCCcEEEeec-ccCCC--Ccc-hHHHHHHH-hhcCCcEEE--eccCCHHHHHHHH-H
Confidence 4421 2 23457777889999999999944 33333 333 22244444 233344344 4999999999998 7
Q ss_pred cCCcEEE
Q psy7343 354 TGVAGVM 360 (487)
Q Consensus 354 ~Gad~Vm 360 (487)
.|+|.|.
T Consensus 146 ~G~D~IG 152 (229)
T COG3010 146 LGFDIIG 152 (229)
T ss_pred cCCcEEe
Confidence 8999764
No 454
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=93.14 E-value=0.27 Score=53.22 Aligned_cols=69 Identities=22% Similarity=0.376 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC-CCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-TIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+..+.++.+.++|+|.|.+..- + +.. ..-++.++++++.. ++||++ |+|.|.+++..+. +.|||+|-+|
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a---~-g~~--~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~-~aGad~i~vg 297 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTA---H-GHS--EGVLDRVREIKAKYPDVQIIA-GNVATAEAARALI-EAGADAVKVG 297 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECC---C-Ccc--hhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHH-HcCCCEEEEC
Confidence 4578889999999998877211 0 001 12357889999887 899998 9999999999999 7899999875
No 455
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=93.12 E-value=3.2 Score=41.23 Aligned_cols=42 Identities=43% Similarity=0.536 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcC
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANG 339 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nG 339 (487)
...+-++.++++||++|.+- +.+ -+..++|.+.+++|+|+-|
T Consensus 161 ~~i~~A~a~e~AGA~~ivlE-----------~vp-~~~a~~It~~l~iP~iGIG 202 (263)
T TIGR00222 161 KLLEDALALEEAGAQLLVLE-----------CVP-VELAAKITEALAIPVIGIG 202 (263)
T ss_pred HHHHHHHHHHHcCCCEEEEc-----------CCc-HHHHHHHHHhCCCCEEeec
Confidence 56677889999999999882 222 4788999999999998765
No 456
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=93.09 E-value=2.5 Score=43.66 Aligned_cols=142 Identities=13% Similarity=0.153 Sum_probs=80.7
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEee-c
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIR-I 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR-~ 280 (487)
..||.+.+. +.+.+...+ .++..|+-|=+..+. .. .+.....+..|.+...++++..+ ..++.|-+-+- +
T Consensus 75 ~VPVaLHLDHg~~~e~i~~---Ai~~GFtSVMiDgS~-l~---~~~~~~~~eeNI~~Trevve~Ah-~~GvsVEaELG~i 146 (347)
T PRK13399 75 DIPICLHQDHGNSPATCQS---AIRSGFTSVMMDGSL-LA---DGKTPASYDYNVDVTRRVTEMAH-AVGVSVEGELGCL 146 (347)
T ss_pred CCcEEEECCCCCCHHHHHH---HHhcCCCEEEEeCCC-CC---CCCCccCHHHHHHHHHHHHHHHH-HcCCeEEEEeeec
Confidence 368999987 555554332 233334433333221 00 01112224456677777777543 44776665431 2
Q ss_pred c----------cc------------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC---C----CCHHHHHHHHhhC
Q psy7343 281 Y----------QD------------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG---L----ASWEHITAVRKAL 331 (487)
Q Consensus 281 ~----------~d------------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g---~----~~~~~i~~i~~~~ 331 (487)
+ .+ ..+..+..+..+++|+|.+.|.=.|.-.. |.+ + -+++.+++|++.+
T Consensus 147 gg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~--Yk~~~~p~~~~L~~drl~eI~~~v 224 (347)
T PRK13399 147 GSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTSHGA--YKFTRKPDGDILAIDRIEEIHARL 224 (347)
T ss_pred cCcccccccccCCccccccccccccCCCHHHHHHHHHHHCcCEEhhhhccccCC--cCCCCCCChhhccHHHHHHHHhhc
Confidence 1 11 12578888888999999997722222211 333 1 5789999999999
Q ss_pred -CCcEEEcCCCCCHHHHHHHHHhc
Q psy7343 332 -TIPVIANGNIQCLADVEACLAQT 354 (487)
Q Consensus 332 -~iPVi~nGgI~s~~da~~~l~~~ 354 (487)
++|++.-|+=..+++..+.+..+
T Consensus 225 ~~vPLVLHGgSGvp~~~~~~~~~~ 248 (347)
T PRK13399 225 PNTHLVMHGSSSVPQELQEIINAY 248 (347)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHHh
Confidence 79999888776664444333333
No 457
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=93.01 E-value=0.61 Score=43.89 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=60.5
Q ss_pred cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHH
Q psy7343 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLA 352 (487)
Q Consensus 273 PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~ 352 (487)
|++.=+|.. +.++..+.++.+.+.|++.|.+.-+ +....+.++.+++...-..++.|.|.+.+++..++
T Consensus 5 ~~~~i~r~~-~~~~~~~~~~~l~~~G~~~vev~~~---------~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~- 73 (190)
T cd00452 5 PLVAVLRGD-DAEDALALAEALIEGGIRAIEITLR---------TPGALEAIRALRKEFPEALIGAGTVLTPEQADAAI- 73 (190)
T ss_pred cEEEEEEcC-CHHHHHHHHHHHHHCCCCEEEEeCC---------ChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHH-
Confidence 444444433 6667888999999999999999422 22345788888888764567889999999999999
Q ss_pred hcCCcEEEec
Q psy7343 353 QTGVAGVMTA 362 (487)
Q Consensus 353 ~~Gad~VmiG 362 (487)
..|+|+++.+
T Consensus 74 ~~Ga~~i~~p 83 (190)
T cd00452 74 AAGAQFIVSP 83 (190)
T ss_pred HcCCCEEEcC
Confidence 7999999876
No 458
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=93.00 E-value=0.91 Score=46.64 Aligned_cols=96 Identities=18% Similarity=0.153 Sum_probs=66.8
Q ss_pred ChHHHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHH-HHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC
Q psy7343 255 DWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARML-ERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL 331 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~l-e~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~ 331 (487)
+++.-.+.++++++.++ +.+.+-.--+|+.++..++++.+ ++.++.+|- | + . .+++...++++.+
T Consensus 116 ~~~~Di~rv~avRe~lGpd~~LrvDAN~~ws~~~Ai~~~~~L~e~~~l~~iE-------q-P-~---~~~~~la~Lr~~~ 183 (327)
T PRK02901 116 TLADDVARVNAVRDALGPDGRVRVDANGGWSVDEAVAAARALDADGPLEYVE-------Q-P-C---ATVEELAELRRRV 183 (327)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHhhhccCceEEe-------c-C-C---CCHHHHHHHHHhC
Confidence 34444556667777763 23333222246777888888888 667666653 1 1 1 2367788899999
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~Gad~VmiG 362 (487)
++||.+.=.+++..|..++++..++|.+++=
T Consensus 184 ~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik 214 (327)
T PRK02901 184 GVPIAADESIRRAEDPLRVARAGAADVAVLK 214 (327)
T ss_pred CCCEEeCCCCCCHHHHHHHHHcCCCCEEEeC
Confidence 9999998889999999999977788888753
No 459
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=92.97 E-value=1 Score=43.25 Aligned_cols=77 Identities=16% Similarity=0.235 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeeccccc-ccHHHHH
Q psy7343 213 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDV-NKTVEYA 291 (487)
Q Consensus 213 ~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~-~~~~e~a 291 (487)
.+.++..+.++.+.+..+.|+++... . . .+| + ++++.+++. +.++++-..++ |+ .+....+
T Consensus 8 ~~~~~a~~~~~~~~~~v~~iKig~~l--~-~---~~G------~----~~v~~l~~~-~~~v~lD~K~~-Dig~t~~~~~ 69 (213)
T TIGR01740 8 TTKDEALDLADSLGPEIEVIKVGIDL--L-L---DGG------D----KIIDELAKL-NKLIFLDLKFA-DIPNTVKLQY 69 (213)
T ss_pred CCHHHHHHHHHhcCCcCcEEEECHHH--H-H---hcC------H----HHHHHHHHc-CCCEEEEEeec-chHHHHHHHH
Confidence 35555566666665555666665433 1 1 122 2 455556654 34676655444 44 3455666
Q ss_pred HHHHHcCCcEEEEEcc
Q psy7343 292 RMLERAGCQLLAVHGR 307 (487)
Q Consensus 292 ~~le~~G~d~I~VhgR 307 (487)
+.+.+.|+|.++||+-
T Consensus 70 ~~~~~~gad~vTvh~~ 85 (213)
T TIGR01740 70 ESKIKQGADMVNVHGV 85 (213)
T ss_pred HHHHhcCCCEEEEcCC
Confidence 7788899999999984
No 460
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=92.97 E-value=0.43 Score=48.08 Aligned_cols=103 Identities=20% Similarity=0.208 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh---hCC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK---ALT 332 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~---~~~ 332 (487)
.+.+..+++.+.+..++||.+.. |-....+.++...+.|.+.||+.|-. +.-.-+....+++.+ ..+
T Consensus 58 ~~~~~~~~~~~a~~~~vPValHL----DH~~~~e~i~~ai~~GftSVM~DgS~------l~~eeNi~~T~~vv~~ah~~g 127 (287)
T PF01116_consen 58 LEYLAAMVKAAAEEASVPVALHL----DHGKDFEDIKRAIDAGFTSVMIDGSA------LPFEENIAITREVVEYAHAYG 127 (287)
T ss_dssp HHHHHHHHHHHHHHSTSEEEEEE----EEE-SHHHHHHHHHHTSSEEEEE-TT------S-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCEEeec----ccCCCHHHHHHHHHhCcccccccCCc------CCHHHHHHHHHHHHHhhhhhC
Confidence 56677777888888899999998 54445677777778899999995431 111113333444333 235
Q ss_pred CcEEE----cC--------------CCCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 333 IPVIA----NG--------------NIQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 333 iPVi~----nG--------------gI~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
+.|-+ .| -.++++++.++.+++|+|.+.++=|-...
T Consensus 128 v~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG 181 (287)
T PF01116_consen 128 VSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHG 181 (287)
T ss_dssp -EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSS
T ss_pred CEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCcccc
Confidence 55443 12 13588999999999999998877554333
No 461
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=92.91 E-value=0.86 Score=46.04 Aligned_cols=108 Identities=15% Similarity=0.065 Sum_probs=63.2
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeeccc-ccccHHHHHHHHHHcCCcEEEEEcccc-CCCCCCCCCC--C-HHHHHHHH-
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQ-DVNKTVEYARMLERAGCQLLAVHGRTV-DQRGMNTGLA--S-WEHITAVR- 328 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~-d~~~~~e~a~~le~~G~d~I~VhgRt~-~~~g~~~g~~--~-~~~i~~i~- 328 (487)
.++...+.++.|.+.+++||++-+--|. +..+....++.++++|+.+|.|-..+. +..|.+.|.. . -+.+.+|+
T Consensus 61 ~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~A 140 (294)
T TIGR02319 61 SVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEA 140 (294)
T ss_pred CHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHH
Confidence 4666777777888888999999886653 334566778999999999999944322 1222223322 1 14444443
Q ss_pred --hhC-CCcEEEcCC--CC---CHHHHHHH---HHhcCCcEEEec
Q psy7343 329 --KAL-TIPVIANGN--IQ---CLADVEAC---LAQTGVAGVMTA 362 (487)
Q Consensus 329 --~~~-~iPVi~nGg--I~---s~~da~~~---l~~~Gad~VmiG 362 (487)
+.. +.+++.|.. .. ..+++.+- ..+.|||+|.+-
T Consensus 141 a~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~ 185 (294)
T TIGR02319 141 AVEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFLE 185 (294)
T ss_pred HHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEec
Confidence 322 223333322 21 23333221 225899999984
No 462
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=92.89 E-value=1.6 Score=46.20 Aligned_cols=94 Identities=12% Similarity=0.119 Sum_probs=68.0
Q ss_pred HHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcE
Q psy7343 258 LLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPV 335 (487)
Q Consensus 258 ~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPV 335 (487)
...+.++++++.++ +.+.+-.--+|+.++..++++.++++++..+-= + . ...+++..+++++.+.+||
T Consensus 191 ~~~~~v~avre~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~iEe--------P-~-~~~d~~~~~~L~~~~~iPI 260 (404)
T PRK15072 191 FVPKLFEAVRNKFGFDLHLLHDVHHRLTPIEAARLGKSLEPYRLFWLED--------P-T-PAENQEAFRLIRQHTTTPL 260 (404)
T ss_pred HHHHHHHHHHhhhCCCceEEEECCCCCCHHHHHHHHHhccccCCcEEEC--------C-C-CccCHHHHHHHHhcCCCCE
Confidence 33567888888773 344443323466667788888888887766631 1 1 2346788999999999999
Q ss_pred EEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 336 IANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 336 i~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
.+.=.+.+..++.++++...+|.+++
T Consensus 261 a~dEs~~~~~~~~~li~~~a~dii~~ 286 (404)
T PRK15072 261 AVGEVFNSIWDCKQLIEEQLIDYIRT 286 (404)
T ss_pred EeCcCccCHHHHHHHHHcCCCCEEec
Confidence 99888899999999997666788865
No 463
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=92.84 E-value=1.6 Score=45.94 Aligned_cols=145 Identities=18% Similarity=0.174 Sum_probs=88.0
Q ss_pred CCCCeeeeec----cCCHHHHHHHHHhhCCc-CcEEE--eecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcE
Q psy7343 202 EDRPLIIQFC----GNDSKNLTEAAKLAEPH-CDGID--INIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPV 274 (487)
Q Consensus 202 ~~~Pv~Vqi~----g~d~~~~~~aa~~~~~~-~d~Id--iN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV 274 (487)
.++|++..+. |-+++++++++..+... .|.|- =|++.|. =+-+.++-..+.+.++...+.++-..
T Consensus 122 ~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~--------~~p~~eRv~a~~~a~~~a~~eTG~~~ 193 (391)
T cd08209 122 HDRPLLMSIFKGVLGLDLDDLAEQLREQALGGVDLIKDDEILFDNP--------LAPALERIRACRPVLQEVYEQTGRRT 193 (391)
T ss_pred CCCceEEeeeccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCC--------CCCHHHHHHHHHHHHHHHHHhhCCcc
Confidence 4689887754 67899999988766555 33321 1111110 01122344555566666566666554
Q ss_pred EEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh--hCCCcEEE----cC--------C
Q psy7343 275 SCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK--ALTIPVIA----NG--------N 340 (487)
Q Consensus 275 ~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~--~~~iPVi~----nG--------g 340 (487)
..-..+..+.++..+-++.+.+.|++++||..- . .-|+.+..+++ ..++||.+ .| |
T Consensus 194 ~ya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~-------~---~G~~~l~~l~~~~~~~lpIhaHra~~ga~~~~~~~G 263 (391)
T cd08209 194 LYAVNLTGPVFTLKEKARRLVEAGANALLFNVF-------A---YGLDVLEALASDPEINVPIFAHPAFAGALYGSPDYG 263 (391)
T ss_pred eEEEEcCCCHHHHHHHHHHHHHhCCCEEEEecc-------c---cchHHHHHHHhcCcCCcEEEecCCcccccccCCCCC
Confidence 433323445677888888899999999999321 1 22556777776 55778873 23 4
Q ss_pred CCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 341 IQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 341 I~s~~da~~~l~~~Gad~VmiGRa 364 (487)
|...--..++....|+|.+.++..
T Consensus 264 is~~~~l~kl~RLaGaD~~~~~~~ 287 (391)
T cd08209 264 IAASVLLGTLMRLAGADAVLFPSP 287 (391)
T ss_pred CcHHHHHHHHHHHcCCCccccCCc
Confidence 433345567776789999998863
No 464
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.80 E-value=0.77 Score=44.49 Aligned_cols=87 Identities=17% Similarity=0.174 Sum_probs=62.3
Q ss_pred cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC----CCcEEEcCCCCCHHHHH
Q psy7343 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL----TIPVIANGNIQCLADVE 348 (487)
Q Consensus 273 PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~----~iPVi~nGgI~s~~da~ 348 (487)
+|+.=+|. .+.++..++++.+.+.|+..|-|.-|+ +...+.++++++.. .--+++.|-|.|.++++
T Consensus 16 ~vi~Vvr~-~~~~~a~~~~~al~~gGi~~iEiT~~t---------p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~ 85 (222)
T PRK07114 16 GMVPVFYH-ADVEVAKKVIKACYDGGARVFEFTNRG---------DFAHEVFAELVKYAAKELPGMILGVGSIVDAATAA 85 (222)
T ss_pred CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCC---------CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHH
Confidence 44444443 277889999999999999999995443 33456677775432 22378999999999999
Q ss_pred HHHHhcCCcEEEeccccccCccccc
Q psy7343 349 ACLAQTGVAGVMTAEGNLYNPALFT 373 (487)
Q Consensus 349 ~~l~~~Gad~VmiGRa~l~~P~lf~ 373 (487)
+.+ +.||+.++.= -.||.+++
T Consensus 86 ~a~-~aGA~FiVsP---~~~~~v~~ 106 (222)
T PRK07114 86 LYI-QLGANFIVTP---LFNPDIAK 106 (222)
T ss_pred HHH-HcCCCEEECC---CCCHHHHH
Confidence 999 7999988732 24555543
No 465
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=92.79 E-value=0.37 Score=48.70 Aligned_cols=86 Identities=14% Similarity=0.114 Sum_probs=57.0
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHH---HhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACL---AQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l---~~~Gad 357 (487)
|.+...+.++.+.+.|+++|.+.|-|.+.. .++..-..+.++.+.+.+ ++||++.=+-.+.+++.++. ++.|||
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~GstGE~~-~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad 97 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGTSGEPG-SLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGAD 97 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcccc-cCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCC
Confidence 455778888889999999999966554432 122222235555555554 68998655545666554443 357999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
+||+....+..|
T Consensus 98 ~v~v~pP~y~~~ 109 (294)
T TIGR02313 98 AAMVIVPYYNKP 109 (294)
T ss_pred EEEEcCccCCCC
Confidence 999998877665
No 466
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=92.79 E-value=1.8 Score=45.76 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=86.2
Q ss_pred CCCCeeeeec----cCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCc-c----ccccCChHHHHHHHHHHhhhcc
Q psy7343 202 EDRPLIIQFC----GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHY-G----AYLQDDWPLLTNLVSSLRQAVQ 271 (487)
Q Consensus 202 ~~~Pv~Vqi~----g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~-G----~~l~~d~~~i~eiv~~v~~~~~ 271 (487)
.++|++..+. |-+++++++++..+... .|.| +.+.. . +-+.++-..+.+.++...+.++
T Consensus 142 ~~RPL~gtiiKP~~Glsp~~~a~~~~~~~~GGvD~I-----------KDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG 210 (412)
T TIGR03326 142 KDRPLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLL-----------KDDENLTSQPFNRFEERVEKLYKVRDKVEAETG 210 (412)
T ss_pred CCCceEEeeccccccCChHHHHHHHHHHHhcCCcee-----------ecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhC
Confidence 3588876654 67899999988776665 3333 22221 0 1112334455555555555665
Q ss_pred CcE--EEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh---hCCCcEEE----cC---
Q psy7343 272 VPV--SCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK---ALTIPVIA----NG--- 339 (487)
Q Consensus 272 iPV--~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~---~~~iPVi~----nG--- 339 (487)
-.. .+|+ ..+.++..+-++.+.+.|+..+||..- ..| |..+..+++ ..++||.+ .|
T Consensus 211 ~~~~ya~Ni--T~~~~em~~ra~~~~~~G~~~~mv~~~-------~~G---~~~l~~l~~~~~~~~l~ih~Hra~~ga~~ 278 (412)
T TIGR03326 211 ERKEYLANI--TAPVREMERRAELVADLGGQYVMVDVV-------VCG---WSALQYIRELTEDLGLAIHAHRAMHAAFT 278 (412)
T ss_pred CcceEEEEe--cCCHHHHHHHHHHHHHhCCCeEEEEee-------ccc---hHHHHHHHHhhccCCeEEEEcCCcccccc
Confidence 544 3454 445667788888888999999999321 112 455666665 56788886 22
Q ss_pred -----CCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 340 -----NIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 340 -----gI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
||.. .-..++....|+|.+.++..
T Consensus 279 ~~~~~Gis~-~vl~kl~RLaGaD~~~~~t~ 307 (412)
T TIGR03326 279 RNPKHGISM-FALAKLYRLIGVDQLHTGTA 307 (412)
T ss_pred cCCCCcCcH-HHHHHHHHHcCCCeeeeCCC
Confidence 5544 33667776789999998863
No 467
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=92.73 E-value=2 Score=40.30 Aligned_cols=128 Identities=20% Similarity=0.192 Sum_probs=79.2
Q ss_pred eeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhh-ccCcEEEEeeccccccc
Q psy7343 208 IQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA-VQVPVSCKIRIYQDVNK 286 (487)
Q Consensus 208 Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~-~~iPV~vKiR~~~d~~~ 286 (487)
+-|...+.++..++++.+.+..+.|++ |-|. +.. .| . +.++.+++. .++|+.+-+-+. +..
T Consensus 5 ~a~d~~~~~~~~~~~~~l~~~i~~iei--g~~~-~~~---~g------~----~~i~~i~~~~~~~~i~~~~~v~-~~~- 66 (202)
T cd04726 5 VALDLLDLEEALELAKKVPDGVDIIEA--GTPL-IKS---EG------M----EAVRALREAFPDKIIVADLKTA-DAG- 66 (202)
T ss_pred EEEcCCCHHHHHHHHHHhhhcCCEEEc--CCHH-HHH---hC------H----HHHHHHHHHCCCCEEEEEEEec-ccc-
Confidence 334445788888888888777888888 3322 111 11 2 344556554 477887743221 221
Q ss_pred HHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEc-CCCCCHHHHHHHHHhcCCcEEEecc
Q psy7343 287 TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIAN-GNIQCLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 287 ~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~n-GgI~s~~da~~~l~~~Gad~VmiGR 363 (487)
..+++.+.++|+|++++|+..... ..-+.++.++ ..+++++.. =+..|++++.+++ ..|+|.|.++.
T Consensus 67 -~~~~~~~~~aGad~i~~h~~~~~~-------~~~~~i~~~~-~~g~~~~v~~~~~~t~~e~~~~~-~~~~d~v~~~~ 134 (202)
T cd04726 67 -ALEAEMAFKAGADIVTVLGAAPLS-------TIKKAVKAAK-KYGKEVQVDLIGVEDPEKRAKLL-KLGVDIVILHR 134 (202)
T ss_pred -HHHHHHHHhcCCCEEEEEeeCCHH-------HHHHHHHHHH-HcCCeEEEEEeCCCCHHHHHHHH-HCCCCEEEEcC
Confidence 244678889999999999763110 0123444444 357777753 5778899988866 67999998853
No 468
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=92.71 E-value=1.4 Score=46.60 Aligned_cols=143 Identities=17% Similarity=0.202 Sum_probs=88.2
Q ss_pred CCCCeeeeec----cCCHHHHHHHHHhhCCc-CcEEE--eecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcE
Q psy7343 202 EDRPLIIQFC----GNDSKNLTEAAKLAEPH-CDGID--INIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPV 274 (487)
Q Consensus 202 ~~~Pv~Vqi~----g~d~~~~~~aa~~~~~~-~d~Id--iN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV 274 (487)
.++|++..+. |-+++++++++..+... .|.|- =|++.|. =+.+.++-+.+.+.++...+.++-..
T Consensus 141 ~~RPLigtiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~l~~q~--------~~p~~eRv~~~~~a~~~a~~eTG~~~ 212 (406)
T cd08207 141 EDRPLIGTIIKPSVGLTPEETAALVRQLAAAGIDFIKDDELLANPP--------YSPLDERVRAVMRVINDHAQRTGRKV 212 (406)
T ss_pred CCCceEEEecccccCCCHHHHHHHHHHHHhCCCCcccccccCCCCC--------CCcHHHHHHHHHHHHHHHHHhhCCcc
Confidence 4689877654 67899999988766555 23220 1111110 01112334455555555555666554
Q ss_pred EEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEE----cC--------CCC
Q psy7343 275 SCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA----NG--------NIQ 342 (487)
Q Consensus 275 ~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~----nG--------gI~ 342 (487)
..-..+..+.++..+-++.+.+.|++.+||..- ..-|..+..+++..++||.+ .| ||.
T Consensus 213 ~y~~NiT~~~~em~~ra~~~~~~G~~~~mv~~~----------~~G~~~l~~l~~~~~l~IhaHra~~ga~~r~p~~Gis 282 (406)
T cd08207 213 MYAFNITDDIDEMRRNHDLVVEAGGTCVMVSLN----------SVGLSGLAALRRHSQLPIHGHRNGWGMLTRSPALGIS 282 (406)
T ss_pred eEEEecCCCHHHHHHHHHHHHHhCCCeEEEecc----------ccchHHHHHHHhcCCceEEECCCcceecccCCCCCCc
Confidence 333323445667777788889999999999321 22356778888888899883 34 343
Q ss_pred CHHHHHHHHHhcCCcEEEecc
Q psy7343 343 CLADVEACLAQTGVAGVMTAE 363 (487)
Q Consensus 343 s~~da~~~l~~~Gad~VmiGR 363 (487)
. .-..++..-.|+|.+.++.
T Consensus 283 ~-~vl~kl~RLaGaD~~~~~~ 302 (406)
T cd08207 283 F-QAYQKLWRLAGVDHLHVNG 302 (406)
T ss_pred H-HHHHHHHHHcCCCccccCC
Confidence 3 3366777678999999886
No 469
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=92.69 E-value=0.84 Score=45.96 Aligned_cols=90 Identities=14% Similarity=0.207 Sum_probs=56.2
Q ss_pred HHHHHHHhhhc-cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh----h-CCC
Q psy7343 260 TNLVSSLRQAV-QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK----A-LTI 333 (487)
Q Consensus 260 ~eiv~~v~~~~-~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~----~-~~i 333 (487)
.+.++.+++.. ..++.+-. ++..++.+. .++|+|.|++. . + +.+.+++..+ . -++
T Consensus 187 ~~ai~~~r~~~~~~kIeVEv------~tl~ea~ea-l~~gaDiI~LD-n-------m----~~e~vk~av~~~~~~~~~v 247 (289)
T PRK07896 187 VAALRAVRAAAPDLPCEVEV------DSLEQLDEV-LAEGAELVLLD-N-------F----PVWQTQEAVQRRDARAPTV 247 (289)
T ss_pred HHHHHHHHHhCCCCCEEEEc------CCHHHHHHH-HHcCCCEEEeC-C-------C----CHHHHHHHHHHHhccCCCE
Confidence 34455555543 34555543 355555444 47999999992 1 1 1233333322 2 267
Q ss_pred cEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCcc
Q psy7343 334 PVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPA 370 (487)
Q Consensus 334 PVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~ 370 (487)
.+.++|||+ .+.+.++. .+|+|.+.+|.-...-|+
T Consensus 248 ~ieaSGGI~-~~ni~~yA-~tGvD~Is~galt~sa~~ 282 (289)
T PRK07896 248 LLESSGGLT-LDTAAAYA-ETGVDYLAVGALTHSVPV 282 (289)
T ss_pred EEEEECCCC-HHHHHHHH-hcCCCEEEeChhhcCCCc
Confidence 799999995 78888887 799999999975543343
No 470
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=92.68 E-value=1.7 Score=43.86 Aligned_cols=99 Identities=23% Similarity=0.304 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHhhhc--cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh---h
Q psy7343 256 WPLLTNLVSSLRQAV--QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK---A 330 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~--~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~---~ 330 (487)
.+.+..+++.+.+.. ++||.+.. |-. ..+.++.+.+.|++.||+-+-. +.-.-+.+..+++++ .
T Consensus 60 ~~~~~~~~~~~a~~~~~~vPV~lHL----DH~-~~~~i~~ai~~GftSVm~d~S~------l~~eEni~~t~~v~~~a~~ 128 (293)
T PRK07315 60 YKVCKNLIENLVESMGITVPVAIHL----DHG-HYEDALECIEVGYTSIMFDGSH------LPVEENLKLAKEVVEKAHA 128 (293)
T ss_pred HHHHHHHHHHHHHHcCCCCcEEEEC----CCC-CHHHHHHHHHcCCCEEEEcCCC------CCHHHHHHHHHHHHHHHHH
Confidence 455677777777666 77999998 555 3556667778999999993221 111223344444443 2
Q ss_pred CCCcEEE--------------cCCCCCHHHHHHHHHhcCCcEEEeccccc
Q psy7343 331 LTIPVIA--------------NGNIQCLADVEACLAQTGVAGVMTAEGNL 366 (487)
Q Consensus 331 ~~iPVi~--------------nGgI~s~~da~~~l~~~Gad~VmiGRa~l 366 (487)
.+++|-+ ....++++++.++. ++|+|.+.+|=|-.
T Consensus 129 ~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~-~tgvD~LAv~iG~v 177 (293)
T PRK07315 129 KGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMV-ETGIDFLAAGIGNI 177 (293)
T ss_pred cCCEEEEecCcccCcCccccCccCCCCHHHHHHHH-HcCCCEEeeccccc
Confidence 3444321 11138999999999 79999999994433
No 471
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=92.64 E-value=1.6 Score=44.29 Aligned_cols=82 Identities=18% Similarity=0.147 Sum_probs=51.1
Q ss_pred cccHHHHHHHHHH-----cCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHHHhcCC
Q psy7343 284 VNKTVEYARMLER-----AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACLAQTGV 356 (487)
Q Consensus 284 ~~~~~e~a~~le~-----~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l~~~Ga 356 (487)
.++..++.+.++- +|+|.||+..-.... -....+.+.+++..+.+ ..|+.++|||+ .+.+.++. .+|+
T Consensus 210 v~tleea~ea~~~~~~~~agaDiImLDnm~~~~---~~~~~~~e~l~~av~~~~~~~~lEaSGGIt-~~ni~~yA-~tGV 284 (308)
T PLN02716 210 TRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPL---ENGDVDVSMLKEAVELINGRFETEASGNVT-LDTVHKIG-QTGV 284 (308)
T ss_pred ECCHHHHHHHHHhcccccCCCCEEEeCCCcccc---cccCCCHHHHHHHHHhhCCCceEEEECCCC-HHHHHHHH-HcCC
Confidence 3455565555541 899999993220000 01112445555554443 47899999995 78888887 7999
Q ss_pred cEEEeccccccCcc
Q psy7343 357 AGVMTAEGNLYNPA 370 (487)
Q Consensus 357 d~VmiGRa~l~~P~ 370 (487)
|.+.+|.--..-|+
T Consensus 285 D~Is~Galthsa~~ 298 (308)
T PLN02716 285 TYISSGALTHSVKA 298 (308)
T ss_pred CEEEeCccccCCCc
Confidence 99999974443343
No 472
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=92.47 E-value=0.42 Score=48.46 Aligned_cols=87 Identities=25% Similarity=0.287 Sum_probs=57.9
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEc-CCCCCHHHHH--HHHHhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIAN-GNIQCLADVE--ACLAQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~n-GgI~s~~da~--~~l~~~Gad 357 (487)
|.+...+.++.+.+.|+|+|.+-|-|.+.. .++-.-..+.++.+++.+ ++|||+. |...+.+.++ +..++.|+|
T Consensus 23 D~~a~~~lv~~li~~Gv~gi~~~GttGE~~-~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad 101 (299)
T COG0329 23 DEEALRRLVEFLIAAGVDGLVVLGTTGESP-TLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGAD 101 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCccch-hcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCC
Confidence 556778888999999999999955554322 122212235566667766 6888874 5554544333 224468999
Q ss_pred EEEeccccccCcc
Q psy7343 358 GVMTAEGNLYNPA 370 (487)
Q Consensus 358 ~VmiGRa~l~~P~ 370 (487)
++|+-...+..|.
T Consensus 102 ~il~v~PyY~k~~ 114 (299)
T COG0329 102 GILVVPPYYNKPS 114 (299)
T ss_pred EEEEeCCCCcCCC
Confidence 9999988887775
No 473
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=92.46 E-value=2.4 Score=43.74 Aligned_cols=135 Identities=13% Similarity=0.146 Sum_probs=75.8
Q ss_pred CCCeeeeec-cCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEe-ec
Q psy7343 203 DRPLIIQFC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKI-RI 280 (487)
Q Consensus 203 ~~Pv~Vqi~-g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKi-R~ 280 (487)
..||.+.+. +.+.+...+ .++..|+-|=+..+. .. .+.....+..|.+...++++... ..+++|-+-+ ++
T Consensus 75 ~VPValHLDHg~~~e~i~~---ai~~GftSVMiDgS~-l~---~~~~~~p~eENI~~Tkevve~Ah-~~Gv~VEaELG~v 146 (347)
T PRK09196 75 HIPVVMHQDHGNSPATCQR---AIQLGFTSVMMDGSL-KA---DGKTPASYEYNVDVTRKVVEMAH-ACGVSVEGELGCL 146 (347)
T ss_pred CCcEEEECCCCCCHHHHHH---HHHcCCCEEEecCCC-Cc---ccCCCCCHHHHHHHHHHHHHHHH-HcCCeEEEEEeec
Confidence 368999987 555554333 233333332222111 00 00001123456667777776553 3477666543 22
Q ss_pred ccc----------------------cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCC-------CCCHHHHHHHHhhC
Q psy7343 281 YQD----------------------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTG-------LASWEHITAVRKAL 331 (487)
Q Consensus 281 ~~d----------------------~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g-------~~~~~~i~~i~~~~ 331 (487)
+.. ..+..++.+.++++|+|.+.|.-.|.-.. |.+ .-+++.+++|++.+
T Consensus 147 gg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~--Yk~~~~p~~~~LdfdrL~eI~~~v 224 (347)
T PRK09196 147 GSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGA--YKFTRKPTGDVLAIDRIKEIHARL 224 (347)
T ss_pred cCccccccccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccccCC--CCCCCCCChhhccHHHHHHHHhcC
Confidence 210 23578888889999999997622222211 332 15889999999999
Q ss_pred -CCcEEEcCCCCCHHHH
Q psy7343 332 -TIPVIANGNIQCLADV 347 (487)
Q Consensus 332 -~iPVi~nGgI~s~~da 347 (487)
++|++.-|+=..++|.
T Consensus 225 ~~vPLVLHGgSG~~~~~ 241 (347)
T PRK09196 225 PNTHLVMHGSSSVPQEL 241 (347)
T ss_pred CCCCEEEeCCCCCCHHH
Confidence 7999987766554443
No 474
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=92.42 E-value=4.2 Score=40.70 Aligned_cols=107 Identities=21% Similarity=0.207 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh---hCC
Q psy7343 256 WPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK---ALT 332 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~---~~~ 332 (487)
.+.+..+++.+.+..++||.... |--...+.+....+.|...+|+.|-. +.-.-+....+++.+ ..+
T Consensus 60 ~~~~~~~v~~~a~~~~vPV~lHl----DHg~~~~~~~~ai~~GFsSvMiDgS~------~~~eENi~~tkevv~~ah~~g 129 (286)
T COG0191 60 ADSLAHMVKALAEKYGVPVALHL----DHGASFEDCKQAIRAGFSSVMIDGSH------LPFEENIAITKEVVEFAHAYG 129 (286)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEC----CCCCCHHHHHHHHhcCCceEEecCCc------CCHHHHHHHHHHHHHHHHHcC
Confidence 56778888888888899999987 65556666777778999999995431 111123344444433 235
Q ss_pred CcEEE----cCC-------------CCCHHHHHHHHHhcCCcEEEeccccccCcccc
Q psy7343 333 IPVIA----NGN-------------IQCLADVEACLAQTGVAGVMTAEGNLYNPALF 372 (487)
Q Consensus 333 iPVi~----nGg-------------I~s~~da~~~l~~~Gad~VmiGRa~l~~P~lf 372 (487)
++|-+ .|| ..+++++.++.+.+|+|...++=|-...++-+
T Consensus 130 vsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~ 186 (286)
T COG0191 130 VSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAAAIGNVHGVYKP 186 (286)
T ss_pred CcEEEEeccccCccCCcccccchhhhCCHHHHHHHHhccCcceeeeeccccccCCCC
Confidence 55432 232 56788999999899999998887776666665
No 475
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=92.42 E-value=1.1 Score=46.78 Aligned_cols=103 Identities=22% Similarity=0.338 Sum_probs=69.0
Q ss_pred cCChHHHHHHHHHHhhhccCcEEEEeec----ccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHH
Q psy7343 253 QDDWPLLTNLVSSLRQAVQVPVSCKIRI----YQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVR 328 (487)
Q Consensus 253 ~~d~~~i~eiv~~v~~~~~iPV~vKiR~----~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~ 328 (487)
++|.+.+..-++++++. +.-+.+-+.. --+.+.+.++++.+.+.|+|.|+| +...|-.+....++.++.+|
T Consensus 121 lND~RNl~~ai~a~kk~-G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIci----KDmaGlltP~~ayelVk~iK 195 (472)
T COG5016 121 LNDVRNLKTAIKAAKKH-GAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICI----KDMAGLLTPYEAYELVKAIK 195 (472)
T ss_pred ccchhHHHHHHHHHHhc-CceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEe----ecccccCChHHHHHHHHHHH
Confidence 57888888777777754 3333333322 225567899999999999999999 23333344445689999999
Q ss_pred hhCCCcEEEc----CCCCCHHHHHHHHHhcCCcEEEec
Q psy7343 329 KALTIPVIAN----GNIQCLADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 329 ~~~~iPVi~n----GgI~s~~da~~~l~~~Gad~VmiG 362 (487)
+.+++||..- -|+.... ..+.+ +.|+|++-.+
T Consensus 196 ~~~~~pv~lHtH~TsG~a~m~-ylkAv-EAGvD~iDTA 231 (472)
T COG5016 196 KELPVPVELHTHATSGMAEMT-YLKAV-EAGVDGIDTA 231 (472)
T ss_pred HhcCCeeEEecccccchHHHH-HHHHH-HhCcchhhhh
Confidence 9999999753 4443332 33444 5799887533
No 476
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=92.39 E-value=2.2 Score=44.98 Aligned_cols=119 Identities=13% Similarity=0.113 Sum_probs=77.0
Q ss_pred CHHHHHHHHHhh-CC-cCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhcc-CcEEEEeecccccccHHHH
Q psy7343 214 DSKNLTEAAKLA-EP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEY 290 (487)
Q Consensus 214 d~~~~~~aa~~~-~~-~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~ 290 (487)
+++++.+.++.+ ++ .|..+-|..|. .+++.-.+.++++++.++ +.+.+-.--+|+.++..++
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~---------------~~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A~~~ 232 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGV---------------LPGEEEIEAVKALAEAFPGARLRLDPNGAWSLETAIRL 232 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCC---------------CCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHHHHH
Confidence 566666555433 33 46555554332 134444556777777762 3333332224566677888
Q ss_pred HHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHhcCCcEEE
Q psy7343 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVM 360 (487)
Q Consensus 291 a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vm 360 (487)
++.+++ ++..+- | + .. +++..+++++.+++||.+.-.+.+.+++.++++...+|.++
T Consensus 233 ~~~l~~-~l~~iE-------e-P-~~---d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~ 289 (395)
T cd03323 233 AKELEG-VLAYLE-------D-P-CG---GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPL 289 (395)
T ss_pred HHhcCc-CCCEEE-------C-C-CC---CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEe
Confidence 888877 666542 2 1 21 78889999999999999977889999999999766677773
No 477
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=92.37 E-value=3.3 Score=42.05 Aligned_cols=95 Identities=9% Similarity=0.079 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHH---cCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh
Q psy7343 255 DWPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLER---AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK 329 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~---~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~ 329 (487)
+++.-.+.++++++.++ +.+.+-.--+|+..+..++++.+++ .+++.|- | + . ...+..+++++
T Consensus 136 ~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i~~iE-------q-P-~---~~~~~~~~l~~ 203 (307)
T TIGR01927 136 ELAREGMLVNLLLEALPDKAELRLDANGGLSPDEAQQFLKALDPNLRGRIAFLE-------E-P-L---PDADEMSAFSE 203 (307)
T ss_pred ChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhcccccCCCceEEe-------C-C-C---CCHHHHHHHHH
Confidence 34444566667777653 2222222124566677788888886 5565552 1 1 1 22377888999
Q ss_pred hCCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 330 ALTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 330 ~~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
.+++||.+.=.+.+..|+.++++...+|.+.+
T Consensus 204 ~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~i 235 (307)
T TIGR01927 204 ATGTAIALDESLWELPQLADEYGPGWRGALVI 235 (307)
T ss_pred hCCCCEEeCCCcCChHHHHHHHhcCCCceEEE
Confidence 99999999989999999999995544566653
No 478
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=92.33 E-value=0.47 Score=48.12 Aligned_cols=85 Identities=20% Similarity=0.116 Sum_probs=54.5
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHH---HhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACL---AQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l---~~~Gad 357 (487)
|.+...+.++.+.+.|+++|.+-|-|.+.. .++..-..+.++.+.+.+ ++||++.-+- +.+++.++. ++.|+|
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~GstGE~~-~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gad 103 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAGGTGEFF-SLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGAD 103 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcc-cCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCC
Confidence 455778888899999999999955443322 122211235555566655 6899865453 555555443 457999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
+||+....+..|
T Consensus 104 av~~~pP~y~~~ 115 (303)
T PRK03620 104 GILLLPPYLTEA 115 (303)
T ss_pred EEEECCCCCCCC
Confidence 999977655544
No 479
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=92.31 E-value=1 Score=44.41 Aligned_cols=112 Identities=15% Similarity=0.214 Sum_probs=75.1
Q ss_pred ccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCC-CCCCCCHHHHHHHHhh
Q psy7343 252 LQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGM-NTGLASWEHITAVRKA 330 (487)
Q Consensus 252 l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~-~~g~~~~~~i~~i~~~ 330 (487)
.+.|.+++.+ +- +.+.||..|=-++-+++++...++.+...|...|++--|+-..... ....-|...+..+|+.
T Consensus 138 NMQNF~LLke----~G-~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~ 212 (286)
T COG2876 138 NMQNFALLKE----VG-RQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQE 212 (286)
T ss_pred chhhhHHHHH----hc-ccCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechHHHHHHHhh
Confidence 3457777665 22 3489999997666678889999999999999999885554322111 2233577899999999
Q ss_pred CCCcEEEcCCCCCH-HHH-----HHHHHhcCCcEEEeccccccCccc
Q psy7343 331 LTIPVIANGNIQCL-ADV-----EACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 331 ~~iPVi~nGgI~s~-~da-----~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
.++|||++=.-.+. .|. ...+ ..||||+|+- ...||..
T Consensus 213 THLPVivDpSH~~Grr~lv~pla~AA~-AaGAdglmiE--VHp~P~~ 256 (286)
T COG2876 213 THLPVIVDPSHATGRRDLVEPLAKAAI-AAGADGLMIE--VHPDPEK 256 (286)
T ss_pred cCCCEEECCCCcccchhhHHHHHHHHH-hccCCeeEEE--ecCCccc
Confidence 99999985222221 122 2233 5799999985 4455554
No 480
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=92.29 E-value=13 Score=36.94 Aligned_cols=154 Identities=17% Similarity=0.188 Sum_probs=88.7
Q ss_pred chhhhcChhHHHHHHh----cCCCCCCeeeeeccCCHHHHHHHHHhhCCc-CcEEEeecCCCcceeeccCccccccCChH
Q psy7343 183 AHQFIADKKLRQEILM----STPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWP 257 (487)
Q Consensus 183 ~~~Ll~~~~~~~~~l~----~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~ 257 (487)
|.......+...++++ ....+.||++.+.+.+.++..+.++.+++. +|+|-+. -|. +- ..+.+
T Consensus 42 GE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~--pP~-------y~---~~~~~ 109 (281)
T cd00408 42 GEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVV--PPY-------YN---KPSQE 109 (281)
T ss_pred cccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEC--CCc-------CC---CCCHH
Confidence 4444444433444442 334568999999988888889999988887 6665542 122 11 12456
Q ss_pred HHHHHHHHHhhhccCcEEE-EeecccccccHHHHHHHHHHc-CCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCC-Cc
Q psy7343 258 LLTNLVSSLRQAVQVPVSC-KIRIYQDVNKTVEYARMLERA-GCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALT-IP 334 (487)
Q Consensus 258 ~i~eiv~~v~~~~~iPV~v-KiR~~~d~~~~~e~a~~le~~-G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~-iP 334 (487)
.+.+..+++.+++++||++ |........-..+..+.+.+. .+.+|-. ...+...+.++.+..+ --
T Consensus 110 ~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~------------s~~d~~~~~~~~~~~~~~~ 177 (281)
T cd00408 110 GIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKD------------SSGDLDRLTRLIALLGPDF 177 (281)
T ss_pred HHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEe------------CCCCHHHHHHHHHhcCCCe
Confidence 7777888888888999987 432211122223444444432 2222222 1146667777766652 22
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+.+|. -+.+...+ ..|++|.+.|.+
T Consensus 178 ~v~~G~---d~~~~~~l-~~G~~G~i~~~~ 203 (281)
T cd00408 178 AVLSGD---DDLLLPAL-ALGADGAISGAA 203 (281)
T ss_pred EEEEcc---hHHHHHHH-HcCCCEEEehHH
Confidence 344454 34455556 589999998864
No 481
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=92.27 E-value=1.4 Score=43.32 Aligned_cols=98 Identities=17% Similarity=0.190 Sum_probs=64.2
Q ss_pred CChHHHHHHHHHHhhhcc-CcEEEEeecccc-c-ccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh
Q psy7343 254 DDWPLLTNLVSSLRQAVQ-VPVSCKIRIYQD-V-NKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA 330 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~~-iPV~vKiR~~~d-~-~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~ 330 (487)
-..+.+...+++|++.++ .||++-+-.|.. . ++..+.++.+.++|+++|.|-+- ....+.++.+++.
T Consensus 55 vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~----------~~~~~~i~ai~~a 124 (240)
T cd06556 55 YPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEGG----------EWHIETLQMLTAA 124 (240)
T ss_pred cCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcCc----------HHHHHHHHHHHHc
Confidence 357777888888888875 799998866532 2 46677788899999999999331 1122455555544
Q ss_pred CCCcEEEcCCCC---------------CHHHHHHHH------HhcCCcEEEec
Q psy7343 331 LTIPVIANGNIQ---------------CLADVEACL------AQTGVAGVMTA 362 (487)
Q Consensus 331 ~~iPVi~nGgI~---------------s~~da~~~l------~~~Gad~VmiG 362 (487)
.+||++==|.. +.+++++++ ++.|||++.+=
T Consensus 125 -~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e 176 (240)
T cd06556 125 -AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVME 176 (240)
T ss_pred -CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 47887643431 223333333 35899999874
No 482
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=92.23 E-value=1.5 Score=44.56 Aligned_cols=102 Identities=16% Similarity=0.156 Sum_probs=62.2
Q ss_pred HHHHHHHHhhhcc--CcEEEEeecccccc-cHHHHHHHHHHc--CCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--
Q psy7343 259 LTNLVSSLRQAVQ--VPVSCKIRIYQDVN-KTVEYARMLERA--GCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL-- 331 (487)
Q Consensus 259 i~eiv~~v~~~~~--iPV~vKiR~~~d~~-~~~e~a~~le~~--G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~-- 331 (487)
+.+.+++.++..+ .|+.+-+.. .+ ...+..+.++.. ++|.|++..-.. ..| ...+.++++++.+
T Consensus 170 ~~~A~~~~~~~~p~~~~i~vevdt---~~~~v~eal~~~~~~~~~~d~I~lDn~~~-----~~G-~~~~~~~~~~~~l~~ 240 (302)
T cd01571 170 QVEAWKAFDETYPEDVPRIALIDT---FNDEKEEALKAAKALGDKLDGVRLDTPSS-----RRG-VFRYLIREVRWALDI 240 (302)
T ss_pred HHHHHHHHHHHCCCcCCeEEEEee---cCcchHHHHHHHHHhCCCCcEEEECCCCC-----CCC-CHHHHHHHHHHHHHh
Confidence 3444555555543 467776521 12 244455555443 589999921100 011 1234444444432
Q ss_pred ----CCcEEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 332 ----TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 332 ----~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
++.++++||| +.+.+.++. .+|+|.+.+|+....-|++
T Consensus 241 ~g~~~~~ieaSGgI-~~~~i~~~a-~~gvD~isvGs~~~~~~~~ 282 (302)
T cd01571 241 RGYKHVKIFVSGGL-DEEDIKELE-DVGVDAFGVGTAISKAPPV 282 (302)
T ss_pred CCCCCeEEEEeCCC-CHHHHHHHH-HcCCCEEECCcccCCCCCC
Confidence 3669999999 788898887 7899999999988877665
No 483
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=92.20 E-value=1.9 Score=42.89 Aligned_cols=108 Identities=14% Similarity=0.143 Sum_probs=63.0
Q ss_pred chhhhcChhHHHHHHhcCCCCCCeeeeeccC-CHHHHHHHHHhhCCc-C-cEEEeecCCCcceeeccCc-cc-cccCChH
Q psy7343 183 AHQFIADKKLRQEILMSTPEDRPLIIQFCGN-DSKNLTEAAKLAEPH-C-DGIDINIGCPQMVAKRGHY-GA-YLQDDWP 257 (487)
Q Consensus 183 ~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~-d~~~~~~aa~~~~~~-~-d~IdiN~GcP~~i~~~gr~-G~-~l~~d~~ 257 (487)
++..+.+.+.+..+ ...+.||.+|-... +.+++..+++.+.+. . +.+=+++|... | +. ....|+.
T Consensus 115 ~s~~~~n~~LL~~~---a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~-------y~~~~~~~~dl~ 184 (260)
T TIGR01361 115 GARNMQNFELLKEV---GKQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRT-------FEKATRNTLDLS 184 (260)
T ss_pred CcccccCHHHHHHH---hcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCC-------CCCCCcCCcCHH
Confidence 44445555444333 34578999998744 899999999988765 1 22222333211 1 11 1123444
Q ss_pred HHHHHHHHHhhhccCcEEEEeec-ccccccHHHHHHHHHHcCCcEEEE
Q psy7343 258 LLTNLVSSLRQAVQVPVSCKIRI-YQDVNKTVEYARMLERAGCQLLAV 304 (487)
Q Consensus 258 ~i~eiv~~v~~~~~iPV~vKiR~-~~d~~~~~e~a~~le~~G~d~I~V 304 (487)
.+. .+++..+.||.+.-.- ++..+-....+......|+++++|
T Consensus 185 ~i~----~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~i 228 (260)
T TIGR01361 185 AVP----VLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMI 228 (260)
T ss_pred HHH----HHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEE
Confidence 433 4666668999995321 112233466777888999998777
No 484
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=92.19 E-value=1.8 Score=43.75 Aligned_cols=52 Identities=12% Similarity=0.170 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeeccc-ccccHHHHHHHHHHcCCcEEEEEc
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQ-DVNKTVEYARMLERAGCQLLAVHG 306 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~~-d~~~~~e~a~~le~~G~d~I~Vhg 306 (487)
.++.+.+.++.|.+.+++||++-+--|. +..+..+.++.++++|+.+|.|-.
T Consensus 59 ~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi~IED 111 (290)
T TIGR02321 59 SMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMED 111 (290)
T ss_pred CHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeC
Confidence 5777778888888899999999886643 333567778999999999999944
No 485
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=92.16 E-value=3.5 Score=42.11 Aligned_cols=96 Identities=8% Similarity=0.153 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHhhhcc--CcEEEEeecccccccHHHHHHHHHH---cCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh
Q psy7343 256 WPLLTNLVSSLRQAVQ--VPVSCKIRIYQDVNKTVEYARMLER---AGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA 330 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~--iPV~vKiR~~~d~~~~~e~a~~le~---~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~ 330 (487)
++.-.+.++++++.++ +.+.+-.--+|+.++..++++.+++ .++..|- | + . ...+++..+++++.
T Consensus 146 ~~~d~~~v~air~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~l~~~~i~~iE-------q-P-~-~~~~~~~~~~l~~~ 215 (320)
T PRK02714 146 LEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWLQLCDRRLSGKIEFIE-------Q-P-L-PPDQFDEMLQLSQD 215 (320)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCCccEEE-------C-C-C-CcccHHHHHHHHHh
Confidence 4444556667777663 3344332224566677777788877 4555442 2 1 1 12367888999999
Q ss_pred CCCcEEEcCCCCCHHHHHHHHHhcCCcEEEe
Q psy7343 331 LTIPVIANGNIQCLADVEACLAQTGVAGVMT 361 (487)
Q Consensus 331 ~~iPVi~nGgI~s~~da~~~l~~~Gad~Vmi 361 (487)
+++||.+.=.+.+..|+.++++...+|.|++
T Consensus 216 ~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~i 246 (320)
T PRK02714 216 YQTPIALDESVANLAQLQQCYQQGWRGIFVI 246 (320)
T ss_pred CCCCEEECCccCCHHHHHHHHHcCCCCEEEE
Confidence 9999999999999999999995545565543
No 486
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=92.09 E-value=0.53 Score=47.39 Aligned_cols=85 Identities=19% Similarity=0.121 Sum_probs=55.4
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHH---HhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACL---AQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l---~~~Gad 357 (487)
|.+.....++.+.+.|+++|.+-|-|.+.. .++..-..+.++.+.+.+ ++|||+.-+- +.+++.++. ++.|||
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~GstGE~~-~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad 96 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAGGTGEFF-SLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGAD 96 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcc-cCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCC
Confidence 455677888889999999999955544432 122111224555555655 6899986554 556655543 458999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
++|+....+..|
T Consensus 97 ~v~~~pP~y~~~ 108 (289)
T cd00951 97 GILLLPPYLTEA 108 (289)
T ss_pred EEEECCCCCCCC
Confidence 999987766554
No 487
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=92.09 E-value=23 Score=39.43 Aligned_cols=105 Identities=19% Similarity=0.309 Sum_probs=63.7
Q ss_pred CChHHHHHHHHHHhhhccCcEEEEeecc----cccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHh
Q psy7343 254 DDWPLLTNLVSSLRQAVQVPVSCKIRIY----QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK 329 (487)
Q Consensus 254 ~d~~~i~eiv~~v~~~~~iPV~vKiR~~----~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~ 329 (487)
+|.+.+...++.+++. +..+.+.+... .+.+...++++.++++|+|.|.+- ...|......-.++++.+++
T Consensus 121 nd~~~~~~ai~~ak~~-G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~----Dt~G~l~P~~~~~lv~~lk~ 195 (593)
T PRK14040 121 NDPRNLETALKAVRKV-GAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIK----DMAGLLKPYAAYELVSRIKK 195 (593)
T ss_pred CcHHHHHHHHHHHHHc-CCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEEC----CCCCCcCHHHHHHHHHHHHH
Confidence 4566777777777764 54443333321 123457888999999999999882 22222222234588889998
Q ss_pred hCCCcEEEcCCCCCHH---HHHHHHHhcCCcEEEeccc
Q psy7343 330 ALTIPVIANGNIQCLA---DVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 330 ~~~iPVi~nGgI~s~~---da~~~l~~~Gad~VmiGRa 364 (487)
.+++||-.-+-=+..- .....+ +.|||.|-..-.
T Consensus 196 ~~~~pi~~H~Hnt~GlA~An~laAi-eAGa~~vD~ai~ 232 (593)
T PRK14040 196 RVDVPLHLHCHATTGLSTATLLKAI-EAGIDGVDTAIS 232 (593)
T ss_pred hcCCeEEEEECCCCchHHHHHHHHH-HcCCCEEEeccc
Confidence 8888886533222222 233444 579998875433
No 488
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=92.02 E-value=0.77 Score=45.91 Aligned_cols=112 Identities=17% Similarity=0.065 Sum_probs=70.4
Q ss_pred chHHHHHHHHhCCccceecccc--chhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHHHHHHHhhCCcCcEEEeecCC
Q psy7343 161 ELPWRLLSRRYGSHLCYTPMVS--AHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGC 238 (487)
Q Consensus 161 d~~fr~i~~~~Ga~l~~t~~v~--~~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~Gc 238 (487)
+.+|..++.+.| ||++.+. |..++.+++...++.+. .+.||+.+++-. .+.++-.+.+-..|.|| +
T Consensus 35 ~~g~~~v~~~~~---~psd~~~~gg~~Rm~~p~~I~aIk~~--V~iPVigk~Rig---h~~Ea~~L~~~GvDiID----~ 102 (293)
T PRK04180 35 EAGAVAVMALER---VPADIRAAGGVARMADPKMIEEIMDA--VSIPVMAKARIG---HFVEAQILEALGVDYID----E 102 (293)
T ss_pred HhChHHHHHccC---CCchHhhcCCeeecCCHHHHHHHHHh--CCCCeEEeehhh---HHHHHHHHHHcCCCEEe----c
Confidence 344566666777 8888765 55677888888876654 379999998831 14454444433467664 2
Q ss_pred CcceeeccCccccccCChHHHHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEE
Q psy7343 239 PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVH 305 (487)
Q Consensus 239 P~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~Vh 305 (487)
+.+ .+| ..+++..+|...++|+.+-. .+..+ +....+.|+|.|--.
T Consensus 103 ------Te~------lrp--ad~~~~~~K~~f~~~fmad~------~~l~E-Alrai~~GadmI~Tt 148 (293)
T PRK04180 103 ------SEV------LTP--ADEEYHIDKWDFTVPFVCGA------RNLGE-ALRRIAEGAAMIRTK 148 (293)
T ss_pred ------cCC------CCc--hHHHHHHHHHHcCCCEEccC------CCHHH-HHHHHHCCCCeeecc
Confidence 111 123 44666677777788988854 34444 445556799988654
No 489
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=92.01 E-value=4.1 Score=38.51 Aligned_cols=129 Identities=18% Similarity=0.143 Sum_probs=73.3
Q ss_pred eeeeccCCHHHHHHHHHhhCCcCcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhc-cCcEEEEeecccccc
Q psy7343 207 IIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPVSCKIRIYQDVN 285 (487)
Q Consensus 207 ~Vqi~g~d~~~~~~aa~~~~~~~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~-~iPV~vKiR~~~d~~ 285 (487)
.|-+...+.++..+.++.+....+.||+.... ... .| .+ +++.+++.. +..+.+-+.+- |..
T Consensus 3 ~~alD~~~~~~a~~~~~~l~~~v~~iev~~~l---~~~---~g------~~----~i~~l~~~~~~~~i~~d~k~~-d~~ 65 (206)
T TIGR03128 3 QLALDLLDIEEALELAEKVADYVDIIEIGTPL---IKN---EG------IE----AVKEMKEAFPDRKVLADLKTM-DAG 65 (206)
T ss_pred EEEecCCCHHHHHHHHHHcccCeeEEEeCCHH---HHH---hC------HH----HHHHHHHHCCCCEEEEEEeec-cch
Confidence 34455678888888888885447777773111 111 11 23 344455442 34444433221 222
Q ss_pred cHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCC-HHHHHHHHhhCCCcEEEc-CCCCC-HHHHHHHHHhcCCcEEEec
Q psy7343 286 KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLAS-WEHITAVRKALTIPVIAN-GNIQC-LADVEACLAQTGVAGVMTA 362 (487)
Q Consensus 286 ~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~-~~~i~~i~~~~~iPVi~n-GgI~s-~~da~~~l~~~Gad~VmiG 362 (487)
+ ..++.+.++|+|.|.+|+-+. ... .+.++.+++ .+++++.. =+..+ .+++..+. +.|+|.|.+.
T Consensus 66 ~--~~~~~~~~~Gad~i~vh~~~~--------~~~~~~~i~~~~~-~g~~~~~~~~~~~t~~~~~~~~~-~~g~d~v~~~ 133 (206)
T TIGR03128 66 E--YEAEQAFAAGADIVTVLGVAD--------DATIKGAVKAAKK-HGKEVQVDLINVKDKVKRAKELK-ELGADYIGVH 133 (206)
T ss_pred H--HHHHHHHHcCCCEEEEeccCC--------HHHHHHHHHHHHH-cCCEEEEEecCCCChHHHHHHHH-HcCCCEEEEc
Confidence 2 136778899999999986531 112 234444444 58888764 23444 46777776 5699999775
Q ss_pred cc
Q psy7343 363 EG 364 (487)
Q Consensus 363 Ra 364 (487)
.+
T Consensus 134 pg 135 (206)
T TIGR03128 134 TG 135 (206)
T ss_pred CC
Confidence 43
No 490
>PLN02417 dihydrodipicolinate synthase
Probab=92.00 E-value=0.54 Score=47.14 Aligned_cols=86 Identities=15% Similarity=0.099 Sum_probs=54.1
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHH---HhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACL---AQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l---~~~Gad 357 (487)
|.+...+.++.+.+.|+++|.+.|-+.+.. .++..-..+.++.+.+.+ ++||++.=+-.+.+++.++. ++.|+|
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~-~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gad 98 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVGGTTGEGQ-LMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMH 98 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcchh-hCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCC
Confidence 455678888888999999999966554322 122111224455555554 58988654444455555443 358999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
+||+.-+.+..|
T Consensus 99 av~~~~P~y~~~ 110 (280)
T PLN02417 99 AALHINPYYGKT 110 (280)
T ss_pred EEEEcCCccCCC
Confidence 999987766554
No 491
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=91.98 E-value=0.81 Score=44.85 Aligned_cols=104 Identities=19% Similarity=0.260 Sum_probs=62.0
Q ss_pred ChHHHHHHHHHHhhhccCcEEEEeecc-cc-cccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCC--CH-HHHHHHHh
Q psy7343 255 DWPLLTNLVSSLRQAVQVPVSCKIRIY-QD-VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLA--SW-EHITAVRK 329 (487)
Q Consensus 255 d~~~i~eiv~~v~~~~~iPV~vKiR~~-~d-~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~--~~-~~i~~i~~ 329 (487)
.++.+.+.++.|.+.+++||++-+.-| ++ ..+..+.++.++++|+.+|.|--. + .+ ..+.. .. +.+.+|+.
T Consensus 53 t~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq-~--~~-~~~~~l~~~ee~~~kI~A 128 (238)
T PF13714_consen 53 TLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQ-R--CG-HGGKQLVSPEEMVAKIRA 128 (238)
T ss_dssp -HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESB-S--TT-TSTT-B--HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeecc-c--cC-CCCCceeCHHHHHHHHHH
Confidence 467777888888888999999998776 33 567888999999999999999433 0 01 11111 22 44444443
Q ss_pred h------CCCcEEEcCCCCC--HHHHHHHHH------hcCCcEEEec
Q psy7343 330 A------LTIPVIANGNIQC--LADVEACLA------QTGVAGVMTA 362 (487)
Q Consensus 330 ~------~~iPVi~nGgI~s--~~da~~~l~------~~Gad~VmiG 362 (487)
. .++-|++==|... .+...+.++ +.|||+|++=
T Consensus 129 a~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~ 175 (238)
T PF13714_consen 129 AVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIP 175 (238)
T ss_dssp HHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEET
T ss_pred HHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 2 2444555434422 333433332 4799999864
No 492
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=91.92 E-value=1 Score=44.72 Aligned_cols=94 Identities=27% Similarity=0.311 Sum_probs=58.4
Q ss_pred HHHHHHHHhhhccCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh--C--CCc
Q psy7343 259 LTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA--L--TIP 334 (487)
Q Consensus 259 i~eiv~~v~~~~~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~--~--~iP 334 (487)
+.+.++.+|+.. |...|+= ...++..++. ...++|+|.||+..- ..+.+++..+. . ++-
T Consensus 174 i~~Av~~aR~~~--~~~~kIE--VEvesle~~~-eAl~agaDiImLDNm------------~~e~~~~av~~l~~~~~~~ 236 (280)
T COG0157 174 ITEAVRRARAAA--PFTKKIE--VEVESLEEAE-EALEAGADIIMLDNM------------SPEELKEAVKLLGLAGRAL 236 (280)
T ss_pred HHHHHHHHHHhC--CCCceEE--EEcCCHHHHH-HHHHcCCCEEEecCC------------CHHHHHHHHHHhccCCceE
Confidence 344555555543 4444431 1344555554 455689999999322 12334443333 2 455
Q ss_pred EEEcCCCCCHHHHHHHHHhcCCcEEEeccccccCccc
Q psy7343 335 VIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371 (487)
Q Consensus 335 Vi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~~P~l 371 (487)
+-++|||+ .+.+.++. .+|+|.+.+|.--..-|++
T Consensus 237 lEaSGgIt-~~ni~~yA-~tGVD~IS~galths~~~l 271 (280)
T COG0157 237 LEASGGIT-LENIREYA-ETGVDVISVGALTHSAPAL 271 (280)
T ss_pred EEEeCCCC-HHHHHHHh-hcCCCEEEeCccccCCccc
Confidence 67899995 78888887 7999999999876666765
No 493
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=91.89 E-value=4.2 Score=41.96 Aligned_cols=109 Identities=14% Similarity=0.107 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHhhhcc-CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCC-CCCCCCCHHHHHHHHhh---
Q psy7343 256 WPLLTNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRG-MNTGLASWEHITAVRKA--- 330 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g-~~~g~~~~~~i~~i~~~--- 330 (487)
.+.+..+++.+.+..+ +||.+.. |-....+.++...++|.+.||+.|-.-.... .+.-.-+....+++.+.
T Consensus 57 ~~~~~~~~~~~ae~~~~VPValHL----DHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~ 132 (347)
T TIGR01521 57 APFLRHLILAAIEEYPHIPVVMHQ----DHGNSPATCQRAIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHA 132 (347)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEC----CCCCCHHHHHHHHHcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHH
Confidence 4667777777777775 9999998 5555566677778889999999543211000 00111133444444332
Q ss_pred CCCcEEE-------c---------C---------C--CCCHHHHHHHHHhcCCcEEEeccccccC
Q psy7343 331 LTIPVIA-------N---------G---------N--IQCLADVEACLAQTGVAGVMTAEGNLYN 368 (487)
Q Consensus 331 ~~iPVi~-------n---------G---------g--I~s~~da~~~l~~~Gad~VmiGRa~l~~ 368 (487)
.++.|-+ . | + .+++++++++.++||+|...++=|-...
T Consensus 133 ~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG 197 (347)
T TIGR01521 133 VGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFVKKTKVDALAVAIGTSHG 197 (347)
T ss_pred cCCeEEEEeeecccccccccccccCcccccccchhhcCCCHHHHHHHHHHHCcCEEehhcccccC
Confidence 2443321 0 1 1 5688999999999999988766543333
No 494
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.88 E-value=0.78 Score=43.20 Aligned_cols=80 Identities=23% Similarity=0.301 Sum_probs=60.2
Q ss_pred cEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEEEcCCCCCHHHHHHHHH
Q psy7343 273 PVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLA 352 (487)
Q Consensus 273 PV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~ 352 (487)
+++.=+|.. +.++..+.++.+.+.|++.|-+.-+ +....+.++.+++....-.++.|-+.+.+++..++
T Consensus 13 ~~~~v~r~~-~~~~~~~~~~~~~~~Gv~~vqlr~k---------~~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~- 81 (187)
T PRK07455 13 RAIAVIRAP-DLELGLQMAEAVAAGGMRLIEITWN---------SDQPAELISQLREKLPECIIGTGTILTLEDLEEAI- 81 (187)
T ss_pred CEEEEEEcC-CHHHHHHHHHHHHHCCCCEEEEeCC---------CCCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHH-
Confidence 454444443 6778888999999999999999322 22345777777776666567888999999999999
Q ss_pred hcCCcEEEecc
Q psy7343 353 QTGVAGVMTAE 363 (487)
Q Consensus 353 ~~Gad~VmiGR 363 (487)
+.|||+|+++-
T Consensus 82 ~~gAdgv~~p~ 92 (187)
T PRK07455 82 AAGAQFCFTPH 92 (187)
T ss_pred HcCCCEEECCC
Confidence 79999998774
No 495
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=91.86 E-value=0.54 Score=47.87 Aligned_cols=86 Identities=17% Similarity=0.144 Sum_probs=55.0
Q ss_pred ccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhC--CCcEEEcCCCCCHHHHHHHH---HhcCCc
Q psy7343 283 DVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKAL--TIPVIANGNIQCLADVEACL---AQTGVA 357 (487)
Q Consensus 283 d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~--~iPVi~nGgI~s~~da~~~l---~~~Gad 357 (487)
|.+...+.++.+.+.|+++|.+-|-|.+.. .++-.-..+.++.+.+.+ ++|||+.=+=.+.+++.++. ++.|+|
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~GstGE~~-~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad 105 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTMGTFGECA-TLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGAD 105 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcccccch-hCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCC
Confidence 555678888889999999999955544322 121111224455555555 59998754444556555443 357999
Q ss_pred EEEeccccccCc
Q psy7343 358 GVMTAEGNLYNP 369 (487)
Q Consensus 358 ~VmiGRa~l~~P 369 (487)
++|+-...+..|
T Consensus 106 ~vlv~~P~y~~~ 117 (309)
T cd00952 106 GTMLGRPMWLPL 117 (309)
T ss_pred EEEECCCcCCCC
Confidence 999998766554
No 496
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=91.85 E-value=1.3 Score=43.71 Aligned_cols=127 Identities=20% Similarity=0.231 Sum_probs=68.7
Q ss_pred HHHhhCCc-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCc-EEEEeecccc---ccc-HHHHHHHH
Q psy7343 221 AAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVP-VSCKIRIYQD---VNK-TVEYARML 294 (487)
Q Consensus 221 aa~~~~~~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iP-V~vKiR~~~d---~~~-~~e~a~~l 294 (487)
.|++++++ +|.|= .|-.......|. -....-..+.....++.|.+.++.| |++-+-.+.- .++ .....+.+
T Consensus 24 sA~l~e~aG~d~i~--vGds~~~~~lG~-pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~ 100 (254)
T cd06557 24 TAKLADEAGVDVIL--VGDSLGMVVLGY-DSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLM 100 (254)
T ss_pred HHHHHHHcCCCEEE--ECHHHHHHHcCC-CCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHH
Confidence 45666665 66663 232112222332 2222345677777888888888999 6665532211 222 23345666
Q ss_pred HHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhhCCCcEE-----------EcCCC----CCHHHHHHHH------Hh
Q psy7343 295 ERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVI-----------ANGNI----QCLADVEACL------AQ 353 (487)
Q Consensus 295 e~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~~~iPVi-----------~nGgI----~s~~da~~~l------~~ 353 (487)
+++|+++|.+-+. ....+.|+.++ ..+|||+ ..||. +|.+.+++++ ++
T Consensus 101 ~~aGa~aVkiEd~----------~~~~~~I~al~-~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~ 169 (254)
T cd06557 101 KEAGADAVKLEGG----------AEVAETIRALV-DAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEE 169 (254)
T ss_pred HHhCCeEEEEcCc----------HHHHHHHHHHH-HcCCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHH
Confidence 6799999999332 11123344433 2378888 45644 2443333333 36
Q ss_pred cCCcEEEe
Q psy7343 354 TGVAGVMT 361 (487)
Q Consensus 354 ~Gad~Vmi 361 (487)
.|||++.+
T Consensus 170 AGA~~i~l 177 (254)
T cd06557 170 AGAFALVL 177 (254)
T ss_pred CCCCEEEE
Confidence 89999865
No 497
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=91.73 E-value=2.1 Score=44.14 Aligned_cols=103 Identities=15% Similarity=0.147 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHhhhcc-CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCC---CCCCCHHHHHHHHhh-
Q psy7343 256 WPLLTNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMN---TGLASWEHITAVRKA- 330 (487)
Q Consensus 256 ~~~i~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~---~g~~~~~~i~~i~~~- 330 (487)
.+.+..+++.+.+... +||.+.. |-....+.++...++|.+.||+.|-.-.. |. .-.-+.+..+++.+.
T Consensus 59 ~~~~~~~~~~~a~~~~~VPValHL----DHg~~~e~i~~ai~~GftSVMiDgS~l~~--~~~~~p~eENI~~Tkevve~A 132 (347)
T PRK09196 59 EPFLRHLILAAVEEYPHIPVVMHQ----DHGNSPATCQRAIQLGFTSVMMDGSLKAD--GKTPASYEYNVDVTRKVVEMA 132 (347)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEC----CCCCCHHHHHHHHHcCCCEEEecCCCCcc--cCCCCCHHHHHHHHHHHHHHH
Confidence 5567777777777664 8999998 55455566777778999999995432110 01 111133444444432
Q ss_pred --CCCcEEE----cC---------------------C--CCCHHHHHHHHHhcCCcEEEeccc
Q psy7343 331 --LTIPVIA----NG---------------------N--IQCLADVEACLAQTGVAGVMTAEG 364 (487)
Q Consensus 331 --~~iPVi~----nG---------------------g--I~s~~da~~~l~~~Gad~VmiGRa 364 (487)
.+++|-+ .| + .+++++++++.++||+|...++=|
T Consensus 133 h~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiG 195 (347)
T PRK09196 133 HACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIG 195 (347)
T ss_pred HHcCCeEEEEEeeccCccccccccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhc
Confidence 3444321 11 1 578999999999999998776543
No 498
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=91.71 E-value=2.2 Score=42.92 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhhcc-CcEEEEeecccccccHHHHHHHHHHcCCcEEEEEccccCCCCCCCCCCCHHHHHHHHhh-----C
Q psy7343 258 LLTNLVSSLRQAVQ-VPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKA-----L 331 (487)
Q Consensus 258 ~i~eiv~~v~~~~~-iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~~~i~~i~~~-----~ 331 (487)
-+.+.++.+++..+ .+|.+-. ++.++ ++.+.++|+|.|++ .. + ..+.++++.+. .
T Consensus 175 ~i~~av~~~r~~~~~~kIeVEv------~tleq-a~ea~~agaDiI~L-Dn-------~----~~e~l~~av~~~~~~~~ 235 (284)
T PRK06096 175 DWSGAINQLRRHAPEKKIVVEA------DTPKE-AIAALRAQPDVLQL-DK-------F----SPQQATEIAQIAPSLAP 235 (284)
T ss_pred cHHHHHHHHHHhCCCCCEEEEC------CCHHH-HHHHHHcCCCEEEE-CC-------C----CHHHHHHHHHHhhccCC
Confidence 35566666776542 3455543 34444 44555799999999 11 1 22333333322 3
Q ss_pred CCcEEEcCCCCCHHHHHHHHHhcCCcEEEecccccc
Q psy7343 332 TIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLY 367 (487)
Q Consensus 332 ~iPVi~nGgI~s~~da~~~l~~~Gad~VmiGRa~l~ 367 (487)
++.+.++|||+ .+.+.++. .+|+|.+.+|--...
T Consensus 236 ~~~leaSGGI~-~~ni~~yA-~tGvD~Is~gal~~a 269 (284)
T PRK06096 236 HCTLSLAGGIN-LNTLKNYA-DCGIRLFITSAPYYA 269 (284)
T ss_pred CeEEEEECCCC-HHHHHHHH-hcCCCEEEECccccC
Confidence 67789999995 78888888 799999988865333
No 499
>PLN02826 dihydroorotate dehydrogenase
Probab=91.69 E-value=1.9 Score=45.67 Aligned_cols=100 Identities=20% Similarity=0.274 Sum_probs=63.3
Q ss_pred CCCCeeeeecc-CCHHHHHHHHHhhCCc-CcEEEe-e--cCCCcceee---ccCccc-cccCChHHHHHHHHHHhhhc--
Q psy7343 202 EDRPLIIQFCG-NDSKNLTEAAKLAEPH-CDGIDI-N--IGCPQMVAK---RGHYGA-YLQDDWPLLTNLVSSLRQAV-- 270 (487)
Q Consensus 202 ~~~Pv~Vqi~g-~d~~~~~~aa~~~~~~-~d~Idi-N--~GcP~~i~~---~gr~G~-~l~~d~~~i~eiv~~v~~~~-- 270 (487)
...|+.||+.- .+.+++.++++.+.+. .|+|-+ | .+.|..+.. ....|+ ....-.+...+++..+.+.+
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 35899999974 3455788888877766 777643 3 122221110 011121 11222344566777777776
Q ss_pred cCcEEEEeecccccccHHHHHHHHHHcCCcEEEEEcc
Q psy7343 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGR 307 (487)
Q Consensus 271 ~iPV~vKiR~~~d~~~~~e~a~~le~~G~d~I~VhgR 307 (487)
++||++-+ .+.+..|+.+.+. +||+.|.| ++
T Consensus 341 ~ipIIgvG----GI~sg~Da~e~i~-AGAs~VQv-~T 371 (409)
T PLN02826 341 KIPLVGCG----GVSSGEDAYKKIR-AGASLVQL-YT 371 (409)
T ss_pred CCcEEEEC----CCCCHHHHHHHHH-hCCCeeee-cH
Confidence 68999987 7788888888775 79999999 54
No 500
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=91.69 E-value=4 Score=44.10 Aligned_cols=196 Identities=15% Similarity=0.179 Sum_probs=104.3
Q ss_pred CCCCCccccccccCCC-chHHHHHHHHhCCccceeccccc-----hhhhcChhHHHHHHhcCCCCCCeeeeeccCCHHHH
Q psy7343 145 RLGSPRFILAPMVDAS-ELPWRLLSRRYGSHLCYTPMVSA-----HQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNL 218 (487)
Q Consensus 145 ~~g~~~~~lApma~~t-d~~fr~i~~~~Ga~l~~t~~v~~-----~~Ll~~~~~~~~~l~~~~~~~Pv~Vqi~g~d~~~~ 218 (487)
..|.+|+++|-|.-.| |..|-....|.| -..|+--| ..+-...+++...+ +.++-..++..--||--+
T Consensus 31 LtGr~PillaGMTPtTVdp~ivAAaAnAG---hwaELAGGGq~t~e~~~~~i~ql~~~l---epG~t~qfN~ifldpylw 104 (717)
T COG4981 31 LTGRSPILLAGMTPTTVDPDIVAAAANAG---HWAELAGGGQVTEEIFTNAIEQLVSLL---EPGRTAQFNSIFLDPYLW 104 (717)
T ss_pred hcCCCCeeecCCCCCcCCHHHHHHHhcCC---ceeeecCCcccCHHHHHHHHHHHHhcc---CCCccceeeEEEechHHh
Confidence 4578899999998665 666666666766 33333221 22212212222222 222222222111133211
Q ss_pred ------HHHHHhhCC--c-CcEEEeecCCCcceeeccCccccccCChHHHHHHHHHHhhhccCcEEE-EeecccccccHH
Q psy7343 219 ------TEAAKLAEP--H-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSC-KIRIYQDVNKTV 288 (487)
Q Consensus 219 ------~~aa~~~~~--~-~d~IdiN~GcP~~i~~~gr~G~~l~~d~~~i~eiv~~v~~~~~iPV~v-KiR~~~d~~~~~ 288 (487)
.++.+.+.. + .++|-|..|.| +.+...|+++.+-. .++|-.+ |= +.++...
T Consensus 105 ~~qig~krLv~kara~G~~I~gvvIsAGIP---------------~le~A~ElI~~L~~-~G~~yv~fKP---GtIeqI~ 165 (717)
T COG4981 105 KLQIGGKRLVQKARASGAPIDGVVISAGIP---------------SLEEAVELIEELGD-DGFPYVAFKP---GTIEQIR 165 (717)
T ss_pred hhcCChHHHHHHHHhcCCCcceEEEecCCC---------------cHHHHHHHHHHHhh-cCceeEEecC---CcHHHHH
Confidence 122222222 2 46666666655 34555566655532 2566443 31 2444555
Q ss_pred HHHHHHHHcCCcEEEEEccccCCCCCCCCCCCH--------HHHHHHHhhCCCcEEEcCCCCCHHHHHHHHHh-------
Q psy7343 289 EYARMLERAGCQLLAVHGRTVDQRGMNTGLASW--------EHITAVRKALTIPVIANGNIQCLADVEACLAQ------- 353 (487)
Q Consensus 289 e~a~~le~~G~d~I~VhgRt~~~~g~~~g~~~~--------~~i~~i~~~~~iPVi~nGgI~s~~da~~~l~~------- 353 (487)
...++..+..---|++|=-... -.|.-.| ....+++..-+|-++..|||-|++++..++--
T Consensus 166 svi~IAka~P~~pIilq~egGr----aGGHHSweDld~llL~tYs~lR~~~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g 241 (717)
T COG4981 166 SVIRIAKANPTFPIILQWEGGR----AGGHHSWEDLDDLLLATYSELRSRDNIVLCVGGGIGTPDDAAPYLTGEWSTAYG 241 (717)
T ss_pred HHHHHHhcCCCCceEEEEecCc----cCCccchhhcccHHHHHHHHHhcCCCEEEEecCCcCChhhcccccccchhhhcC
Confidence 5555555555445555321111 1122223 44567788889999999999999999988721
Q ss_pred ---cCCcEEEeccccccCc
Q psy7343 354 ---TGVAGVMTAEGNLYNP 369 (487)
Q Consensus 354 ---~Gad~VmiGRa~l~~P 369 (487)
.-.||+.+|+++|.--
T Consensus 242 ~P~MP~DGiLvGtaaMatK 260 (717)
T COG4981 242 FPPMPFDGILVGTAAMATK 260 (717)
T ss_pred CCCCCcceeEechhHHhhh
Confidence 2479999999998764
Done!