RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7343
(487 letters)
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown
function; HET: FMN; 1.59A {Thermotoga maritima} SCOP:
c.1.4.1
Length = 318
Score = 199 bits (509), Expect = 2e-60
Identities = 79/315 (25%), Positives = 139/315 (44%), Gaps = 30/315 (9%)
Query: 149 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 208
+ LAPM ++ +R L+ +G+ ++ MVSA F+ + + + E L+ P +R + +
Sbjct: 5 VKVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQ-KTEELLPQPHERNVAV 63
Query: 209 QFCGNDSKNLTEAAKLAEPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVSSLR 267
Q G++ L+EAA++ ID+N GCP + V K G G L D +V LR
Sbjct: 64 QIFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGA-GGALLKDLRHFRYIVRELR 122
Query: 268 QAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAV 327
++V S K R+ + N+ E R+L G + +H RTV Q TG A W+ ++ +
Sbjct: 123 KSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQ--SFTGRAEWKALSVL 180
Query: 328 RKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALF--------TGQ-TRP 378
K IP +G+I D + L ++G G++ A G + P +F +G+ + P
Sbjct: 181 EK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEP 238
Query: 379 AW----ELASEYLDLVAQY-----PVRLQYARGHVFNMCHHLLTLPENSDVRLLVGKTNH 429
+ +L+L+ + V R + L R V K
Sbjct: 239 SREEILRTFERHLELLIKTKGERKAVVE--MRKFLAGYTKD---LKGARRFREKVMKIEE 293
Query: 430 IKDLRKAVDMLRERF 444
++ L++ +
Sbjct: 294 VQILKEMFYNFIKEV 308
Score = 53.0 bits (128), Expect = 7e-08
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 79 PRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLII 138
+ LAPM ++ +R L+ +G+ ++ MVSA F+ + + + E L+ P +R + +
Sbjct: 5 VKVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQ-KTEELLPQPHERNVAV 63
Query: 139 QRTIF 143
Q IF
Sbjct: 64 Q--IF 66
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN;
1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Length = 350
Score = 103 bits (260), Expect = 1e-24
Identities = 85/362 (23%), Positives = 146/362 (40%), Gaps = 81/362 (22%)
Query: 148 SPRFILAPMVDASELPW---------RLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM 198
PR +APMVD R +S L YT M + + R +L
Sbjct: 3 DPRLSVAPMVD-----RTDRHFRFLVRQVSLG--VRL-YTEMTVDQAVLRGNRER--LLA 52
Query: 199 STPEDRPLIIQFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWP 257
PE+ P+ +Q G+D K+L EAA++ E D I++N+GCP A+ G YGA L D
Sbjct: 53 FRPEEHPIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLA 112
Query: 258 LLTNLVSSLRQAVQVPVSCKIRI-------YQDVNKTVEYARMLERAGCQLLAVHGRTVD 310
+ ++ ++ +AV+VPV+ K+R+ Y+ + ++VE + AG ++ VH R+
Sbjct: 113 RVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVE---AMAEAGVKVFVVHARSAL 169
Query: 311 QRGMNTGLASWEHITAVRKALTIP------------------VIANGNIQCLADVEACLA 352
++T + IP + NG I+ L + L
Sbjct: 170 L-ALST-----------KANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK 217
Query: 353 QTGVAGVMTAEGNLYNPALFT-------GQTRP--AWELASEYLDLVAQYPVRLQYARG- 402
+ V GVM +P + G R E+A + + + +G
Sbjct: 218 R--VDGVMLGRAVYEDPFVLEEADRRVFGLPRRPSRLEVARRMRAYLEE-----EVLKGT 270
Query: 403 HVFNMCHHLLTL----PENSDVRLLVGKTNHIKDLRKAVDMLRERFIDYHEGRKLWPPPN 458
+ + H+L L P+ R L+ + ++ L +A+ ++ E + E K P
Sbjct: 271 PPWAVLRHMLNLFRGRPKGRLWRRLLSEGRSLQALDRALRLMEEEVGEEGEKEKPGPRGQ 330
Query: 459 YP 460
Sbjct: 331 RE 332
Score = 35.7 bits (83), Expect = 0.028
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 19/71 (26%)
Query: 78 SPRFILAPMVDASELPW---------RLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILM 128
PR +APMVD R +S L YT M + + R +L
Sbjct: 3 DPRLSVAPMVD-----RTDRHFRFLVRQVSLG--VRL-YTEMTVDQAVLRGNRER--LLA 52
Query: 129 STPEDRPLIIQ 139
PE+ P+ +Q
Sbjct: 53 FRPEEHPIALQ 63
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 9e-10
Identities = 79/521 (15%), Positives = 155/521 (29%), Gaps = 205/521 (39%)
Query: 87 VDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPE--------DRPLII 138
+DA R L+ +GS L + +V F +L+++ PE D P
Sbjct: 1 MDAYST--RPLTLSHGS-LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT-- 55
Query: 139 QRTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADK------KL 192
+P +EL + L +++
Sbjct: 56 ---------TP----------AELVGKFLG-----------------YVSSLVEPSKVGQ 79
Query: 193 RQEILMSTPEDRPLIIQF-----CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGH 247
++L + +F GND L AAKL + + D + + + + +
Sbjct: 80 FDQVL------NLCLTEFENCYLEGNDIHAL--AAKLLQEN----DTTLVKTKELI-KNY 126
Query: 248 YGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIY----------------QDVNKTVEY- 290
A + P S+L +AV ++ +D+ +T Y
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVG---EGNAQLVAIFGGQGNTDDYFEELRDLYQT--YH 181
Query: 291 ---ARMLERAGCQLLAVHGRTVD-----QRGMNTGLASW----------EHITAVRKALT 332
+++ + L + T+D +G+N + W +++ ++ ++
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN--ILEWLENPSNTPDKDYLLSI--PIS 237
Query: 333 IPVIANGNIQCL-------------ADVEACL-AQTGV-AGVMTAEGNLYNPALFTGQTR 377
P+I G IQ ++ + L TG G++TA A+ +
Sbjct: 238 CPLI--GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV------AIAETDSW 289
Query: 378 PAW-ELASEYLDLV------AQ--YPVR------LQYA--------------RG------ 402
++ + + ++ YP L+ +
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 403 --HVFNMCHHLLTLPENSDVRL-LV-GKTNHI-----KDLRKAVDMLRERFIDY------ 447
+V H LP V + LV G N + + L LR+
Sbjct: 350 QDYVNKTNSH---LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 448 --HEGRKLWPPPNY-PMSSNHHNLSLPPWICQPYVRPTPEQ 485
RKL + P++S H S + P +
Sbjct: 407 IPFSERKLKFSNRFLPVASPFH--S-------HLLVPASDL 438
Score = 52.7 bits (126), Expect = 2e-07
Identities = 45/306 (14%), Positives = 88/306 (28%), Gaps = 111/306 (36%)
Query: 32 HSPVAHPPNPIPQECH----------SPA---ARCKGTNVVPKDCHSST--ARSDAW--- 73
P++ P + Q H +P + KG + ++ A +D+W
Sbjct: 233 SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 74 -----------------TQLGSPRFILAP-MVDASE-----LPWRLLSRRYGSHLCYTPM 110
P L P +++ S +P +PM
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP--------------SPM 338
Query: 111 VSAHQFIADKKLRQEIL---MSTPEDRPLIIQRTIFPRL----GSP----------RFIL 153
+S + ++++ + P + + I + G P R
Sbjct: 339 LSISN-LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 154 APM-VDASELP---------WRLL--SRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTP 201
AP +D S +P R L + + SHL +V A I ++ + +
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL----LVPASDLINKDLVKNNVSFNAK 453
Query: 202 EDRPLIIQ-FCGNDSKNL-TEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 259
+ + I + D +L + ++E D I V W
Sbjct: 454 D---IQIPVYDTFDGSDLRVLSGSISERIVDCI-----IRLPV------------KWETT 493
Query: 260 TNLVSS 265
T ++
Sbjct: 494 TQFKAT 499
Score = 37.3 bits (86), Expect = 0.012
Identities = 53/326 (16%), Positives = 111/326 (34%), Gaps = 88/326 (26%)
Query: 78 SPRFILAPMVD-ASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLR--QEILMSTPEDR 134
+ ++ ++ ++E L+ + +T ++ +++ + ++ L+S P
Sbjct: 179 TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 135 PLI--IQRTIFPRLGSPRFILAPMVDASEL---PWRLLSRRYGSHLCYTPMVSAHQFIAD 189
PLI IQ + +V A L P L S G+ +V+A IA
Sbjct: 239 PLIGVIQLAHY------------VVTAKLLGFTPGELRSYLKGATGHSQGLVTA-VAIA- 284
Query: 190 KKLRQEILMSTPEDRPLIIQFCGNDSKNLTE------AAKLAEPHC--------DGIDIN 235
+ E F + K +T A P+ D ++ N
Sbjct: 285 -------ETDSWES------FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 236 IGCPQ-MVAKRG-----------HYGAYLQDDWPLLTNLVSSLRQAVQV---PVS----- 275
G P M++ ++L + +LV+ + V V P S
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV-VSGPPQSLYGLN 390
Query: 276 ---CKIRIYQDVNKT-VEYARMLERAGCQLLAV----H----GRTVDQRGMNTGLASWEH 323
K + ++++ + ++ + + L V H D +N L +
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL--INKDLVK-NN 447
Query: 324 ITAVRKALTIPV--IANG-NIQCLAD 346
++ K + IPV +G +++ L+
Sbjct: 448 VSFNAKDIQIPVYDTFDGSDLRVLSG 473
Score = 29.2 bits (65), Expect = 4.4
Identities = 26/168 (15%), Positives = 48/168 (28%), Gaps = 47/168 (27%)
Query: 255 DWPLLTNLVSSLRQAVQV-PVSCKI--------RIYQDVNKTVEYARMLERAGCQLLAVH 305
D S+ V PV+ I RI ++ Y+ M+
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN------YSAMIFETIVDGKLKT 1703
Query: 306 GRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQ-CLADVE-ACLAQTGVAGVMTAE 363
+ + ++ ++ + L+ Q L +E A + ++
Sbjct: 1704 EKIFKEINEHSTSYTFRSEKGL---LSATQFT----QPALTLMEKAAFE------DLKSK 1750
Query: 364 GNLYNPALFTGQTRPAWELAS--EYLDLVAQ---YP----VRLQYARG 402
G + A F G S EY L + V + + RG
Sbjct: 1751 GLIPADATFAGH--------SLGEYAALASLADVMSIESLVEVVFYRG 1790
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer,
alpha-beta barrel, beta sandwich, FAD domain alpha/beta
NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Length = 311
Score = 56.4 bits (137), Expect = 5e-09
Identities = 46/197 (23%), Positives = 76/197 (38%), Gaps = 29/197 (14%)
Query: 197 LMSTPEDRPLIIQFCGNDSK-NLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQD 254
L + P+I G++ + AK+ + + I++NI CP + H G
Sbjct: 92 LNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNV----KHGGQAFGT 147
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLA----VHGRTVD 310
D + LV + + +VP+ K+ V V A+ +E AG L + G D
Sbjct: 148 DPEVAAALVKACKAVSKVPLYVKLSPN--VTDIVPIAKAVEAAGADGLTMINTLMGVRFD 205
Query: 311 QR------GMNTGLASWEHI--TAVR------KALTIPVIANGNIQCLADV-EACLAQTG 355
+ TG S I A++ + + IP+I G + DV E +A
Sbjct: 206 LKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGAS 265
Query: 356 VAGVMTAEGNLYNPALF 372
V TA N +P +
Sbjct: 266 AVAVGTA--NFADPFVC 280
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN,
beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis}
SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Length = 338
Score = 49.1 bits (118), Expect = 2e-06
Identities = 25/126 (19%), Positives = 40/126 (31%), Gaps = 21/126 (16%)
Query: 283 DVNKTVEYARMLERAGCQLLAV-HGRTVDQR-----GMNTGLASWEHITAVRKALTIPVI 336
D+ + +A+ ++ G L+ G V G A +R+ +
Sbjct: 227 DIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAE-----KIREQADMATG 281
Query: 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPVR 396
A G I + E L + L +P A A + L+ PV
Sbjct: 282 AVGMITDGSMAEEILQNGRADLIFIGRELLRDPFF-------ARTAAKQ-LNTEIPAPV- 332
Query: 397 LQYARG 402
QY RG
Sbjct: 333 -QYERG 337
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel,
oxidoreductase, flavoprotein; HET: FMN; 2.30A
{Geobacillus kaustophilus} PDB: 3gr8_A*
Length = 340
Score = 49.1 bits (118), Expect = 2e-06
Identities = 32/126 (25%), Positives = 39/126 (30%), Gaps = 21/126 (16%)
Query: 283 DVNKTVEYARMLERAGCQLLAV-HGRTVDQR-----GMNTGLASWEHITAVRKALTIPVI 336
V YA+ ++ G L+ V G V R G A +R+ IP
Sbjct: 227 TAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAE-----LIRREADIPTG 281
Query: 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPVR 396
A G I E L V L NP + A E L PV
Sbjct: 282 AVGLITSGWQAEEILQNGRADLVFLGRELLRNPYW-------PYAAARE-LGAKISAPV- 332
Query: 397 LQYARG 402
QY RG
Sbjct: 333 -QYERG 337
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P
epimerase, NANE, structural genomics, protein STR
initiative, PSI; 1.95A {Staphylococcus aureus subsp}
SCOP: c.1.2.5
Length = 223
Score = 47.2 bits (112), Expect = 3e-06
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 287 TVEYARMLERAGCQLLAV--HGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCL 344
TVE A+ R G + HG T +G ++ + V +++ VIA GN+
Sbjct: 128 TVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITP 187
Query: 345 ADVEACLAQTGVAGVM 360
+ + GV +
Sbjct: 188 DMYKRVMD-LGVHCSV 202
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A
{Thermus scotoductus} PDB: 3hf3_A*
Length = 349
Score = 47.5 bits (114), Expect = 5e-06
Identities = 29/127 (22%), Positives = 39/127 (30%), Gaps = 22/127 (17%)
Query: 283 DVNKTVEYARMLERAGCQLLAV-------HGRTVDQRGMNTGLASWEHITAVRKALTIPV 335
+ T+ +AR L+ G LL R G A AVRK + +
Sbjct: 237 SLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFAD-----AVRKRVGLRT 291
Query: 336 IANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPV 395
A G I E L V+ L +P A L + + P
Sbjct: 292 GAVGLITTPEQAETLLQAGSADLVLLGRVLLRDPYF-------PLRAAKA-LGVAPEVPP 343
Query: 396 RLQYARG 402
QY RG
Sbjct: 344 --QYQRG 348
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN;
1.03A {Pseudomonas putida} PDB: 3l5m_A* 3n19_B* 3n16_A*
3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A*
2h8x_A*
Length = 363
Score = 47.1 bits (113), Expect = 7e-06
Identities = 24/127 (18%), Positives = 40/127 (31%), Gaps = 19/127 (14%)
Query: 283 DVNKTVEYARMLERAGCQLLAV-------HGRTVDQRGMNTGLASWEHITAVRKALTIPV 335
+ +++E AR + G LL+V +A VR+ +PV
Sbjct: 244 TLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAE-----RVRREAKLPV 298
Query: 336 IANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPV 395
+ EA L + V +L +P A+ A E A + +
Sbjct: 299 TSAWGFGTPQLAEAALQANQLDLVSVGRAHLADPHW-------AYFAAKELGVEKASWTL 351
Query: 396 RLQYARG 402
YA
Sbjct: 352 PAPYAHW 358
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan
biosynthesis; 1.8A {Streptomyces coelicolor} SCOP:
c.1.2.1 PDB: 2vep_A 2x30_A
Length = 244
Score = 44.9 bits (107), Expect = 2e-05
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 282 QDVNKTVEYARMLERAGCQLLAVHGRT-VDQRGMNTGLASWEHITAVRKALTIPVIANGN 340
+D E L + GC V T + + G G + E + V A PV+A+G
Sbjct: 143 RDGGDLYETLDRLNKEGCARYVV---TDIAKDGTLQGP-NLELLKNVCAATDRPVVASGG 198
Query: 341 IQCLADVEAC--LAQTGVAGV 359
+ L D+ A L GV G
Sbjct: 199 VSSLDDLRAIAGLVPAGVEGA 219
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis,
TIM-barrel, His biosynthesis, tryptophan biosynthesis;
HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A
2y85_A*
Length = 244
Score = 43.7 bits (104), Expect = 6e-05
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 282 QDVNKTVEYARMLERAGCQLLAVHGRT-VDQRGMNTGLASWEHITAVRKALTIPVIANGN 340
D + L+ GC V T + + G G + + + V PVIA+G
Sbjct: 146 TDGGDLWDVLERLDSEGCSRFVV---TDITKDGTLGGP-NLDLLAGVADRTDAPVIASGG 201
Query: 341 IQCLADVEAC--LAQTGVAGV 359
+ L D+ A L GV G
Sbjct: 202 VSSLDDLRAIATLTHRGVEGA 222
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism,
sugars, csgid, carbohydrate metabolism, isomerase; HET:
MSE 16G; 1.50A {Salmonella enterica subsp}
Length = 232
Score = 42.4 bits (99), Expect = 1e-04
Identities = 12/74 (16%), Positives = 20/74 (27%), Gaps = 3/74 (4%)
Query: 287 TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLAD 346
+V+ +R G ++ + A+ A VIA G A
Sbjct: 138 SVDDGLACQRLGADIIGTTMSGYTTPDTPEE-PDLPLVKALHDA-GCRVIAEGRYNSPAL 195
Query: 347 VEACLAQTGVAGVM 360
+ G V
Sbjct: 196 AAEAIRY-GAWAVT 208
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 42.7 bits (101), Expect = 3e-04
Identities = 12/72 (16%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 287 TVEYARMLERAGCQLLAV----HGRTVDQRGMNTGLASWEHITA-VRKALTIPVIANGNI 341
TVE A+ +E AG ++ H + ++ +T ++ +++P++ I
Sbjct: 230 TVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRI 289
Query: 342 QCLADVEACLAQ 353
+ L++
Sbjct: 290 NDPQVADDILSR 301
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM
barrel, oxidoreductase; HET: MLY FMN; 2.40A
{Streptococcus mutans}
Length = 345
Score = 41.4 bits (97), Expect = 5e-04
Identities = 22/177 (12%), Positives = 54/177 (30%), Gaps = 34/177 (19%)
Query: 197 LMSTPEDRPLIIQFCGNDSKNLTEAAKLA-----EPHCDGIDINIGCPQMVAKRGHYGAY 251
L P+ + + G + E + + +++N+ CP +
Sbjct: 122 LQKQPDSKNHFLSLVG---MSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQ----- 173
Query: 252 LQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLL-----AVHG 306
+ D+ ++S + P+ K+ Y D+ + A + + +G
Sbjct: 174 IAYDFETTDQILSEVFTYFTKPLGIKLPPYFDIVHFDQAAAIFNXYPLTFVNCINSIGNG 233
Query: 307 RTVDQRGMNTGLA--------------SWEHITAVRKAL--TIPVIANGNIQCLADV 347
++ + + ++ A K L +I +I G + D
Sbjct: 234 LVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLNPSIQIIGTGGVXTGRDA 290
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol-
4-carboxamid ribonucleotid...; isomerase, histidine
biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1
PDB: 2cff_A 2w79_A
Length = 241
Score = 40.6 bits (96), Expect = 5e-04
Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 10/80 (12%)
Query: 286 KTVEYARMLERAGCQLLAVHGRT-VDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCL 344
V + L+ G + + T +++ G + + + V+A G I
Sbjct: 145 DPVSLLKRLKEYGLEEIVH---TEIEKDGTLQEH-DFSLTKKIAIEAEVKVLAAGGISSE 200
Query: 345 ADVEA-----CLAQTGVAGV 359
++ + GV
Sbjct: 201 NSLKTAQKVHTETNGLLKGV 220
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of
dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN;
1.60A {Thermoanaerobacter pseudethanolicus AT} PDB:
3krz_A*
Length = 343
Score = 41.0 bits (97), Expect = 5e-04
Identities = 23/117 (19%), Positives = 35/117 (29%), Gaps = 19/117 (16%)
Query: 283 DVNKTVEYARMLERAGCQLLAV-HGRTVDQR-----GMNTGLASWEHITAVRKALTIPVI 336
+++ VEY M+ + L+ V G ++ G A ++K I
Sbjct: 228 NIDMMVEYINMI-KDKVDLIDVSSGGLLNVDINLYPGYQVKYAE-----TIKKRCNIKTS 281
Query: 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQY 393
A G I E L+ V L NP + D QY
Sbjct: 282 AVGLITTQELAEEILSNERADLVALGRELLRNPYW-------VLHTYTSKEDWPKQY 331
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel,
flavoprotein, mutant enzyme, oxidoreductase; HET: FMN;
1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A*
1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A*
1jrc_A* 1jqx_A*
Length = 311
Score = 39.9 bits (94), Expect = 0.001
Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 10/104 (9%)
Query: 197 LMSTPEDRPLIIQFCGN-DSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQD 254
++ P+ G ++N+ K+ E ++N+ CP + + L
Sbjct: 87 QKENAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQ-----LAY 141
Query: 255 DWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAG 298
D+ L+ + P+ K+ Y D+ V + M E
Sbjct: 142 DFEATEKLLKEVFTFFTKPLGVKLPPYFDL---VHFDIMAEILN 182
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural
genomics, epimerase, PSI, structure initiative; 1.60A
{Streptococcus pyogenes} SCOP: c.1.2.5
Length = 234
Score = 38.8 bits (90), Expect = 0.002
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
Query: 287 TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLAD 346
T + + +AG + I A+ KA I VIA G I +
Sbjct: 142 TFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA-GIAVIAEGKIHSPEE 200
Query: 347 VEACLAQTGVAGVM 360
+ GVAG++
Sbjct: 201 AKKINDL-GVAGIV 213
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus
subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 38.2 bits (89), Expect = 0.004
Identities = 27/151 (17%), Positives = 46/151 (30%), Gaps = 27/151 (17%)
Query: 216 KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAV-QVPV 274
K+L AA A G P V G + L+D P +R+ +
Sbjct: 76 KSLARAASQA-----------GIPLAV---GSQMSALKD--PSERLSYEIVRKENPNGLI 119
Query: 275 SCKIRIYQDVNKTVEYARMLERAGCQLLAVH----GRTVDQRGMNTGLASWEHITAVRKA 330
+ + +E G L +H V G + + + I +
Sbjct: 120 FANLGSEATAA---QAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSR 176
Query: 331 LTIPVIANGNIQCLADVE--ACLAQTGVAGV 359
+++PVI + L + G A V
Sbjct: 177 VSVPVIVKE-VGFGMSKASAGKLYEAGAAAV 206
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel,
ribulose-phosphate binding barrel, carbohydrate
metabolic process; HET: BTB; 1.80A {Salmonella enterica
subsp}
Length = 229
Score = 37.7 bits (87), Expect = 0.005
Identities = 14/76 (18%), Positives = 21/76 (27%), Gaps = 7/76 (9%)
Query: 287 TVEYARMLERAGCQLLAV--HGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCL 344
TV + G + + G T + LA + VIA G
Sbjct: 138 TVNEGISCHQKGIEFIGTTLSGYTGPITPVEPDLA----MVTQLSHAGCRVIAEGRYNTP 193
Query: 345 ADVEACLAQTGVAGVM 360
A + + G V
Sbjct: 194 ALAANAI-EHGAWAVT 208
>3kts_A Glycerol uptake operon antiterminator regulatory; structural
genomics, PSI-2, protein structur initiative; HET: UNL;
2.75A {Listeria monocytogenes str}
Length = 192
Score = 35.8 bits (83), Expect = 0.013
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368
E + + + L IPVIA G I+ V +A +G V T+ +L+
Sbjct: 140 EQVQKMTQKLHIPVIAGGLIETSEQVNQVIA-SGAIAVTTSNKHLWE 185
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.031
Identities = 51/359 (14%), Positives = 113/359 (31%), Gaps = 100/359 (27%)
Query: 1 MLV------VVDFISS-VLCYLSL-HWVFGLVT--SMELHRHSPVAHPPNPIPQE-C-HS 48
+L+ V DF+S+ ++SL H L L + P +P+E +
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPREVLTTN 326
Query: 49 PAARCKGTNVVPKDCHSSTARSDAWTQLGSPRF---------ILAP------------MV 87
P +++ + A D W + + +L P
Sbjct: 327 PRR----LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 88 DASELPWRLLSRRYGSHLCYTPMVSAHQFI----ADKK----------LRQEILMSTPED 133
++ +P LLS + + MV ++ +K+ + E+ + +
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442
Query: 134 RPL---IIQRTIFPRLGSPRFILAPMVDASELPWRLLSRRYG-SHLCYTPMVSAHQFIAD 189
L I+ P+ ++ P +D +Y SH+ + H
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLD-----------QYFYSHIGH------HL---- 481
Query: 190 KKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHY 248
K + M+ L +F ++ + A + + + + Y
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-----------Y 530
Query: 249 GAYLQDDWPLLTNLVSSL--------RQAVQVPVSCKIRI-YQDVNKTV--EYARMLER 296
Y+ D+ P LV+++ + + +RI ++ + E + ++R
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 29.4 bits (65), Expect = 3.3
Identities = 50/394 (12%), Positives = 122/394 (30%), Gaps = 85/394 (21%)
Query: 73 WTQLG---SPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 129
W L SP +L + L + + S ++ + +LR +L S
Sbjct: 186 WLNLKNCNSPETVLEMLQK---L-LYQIDPNWTSRSDHSSNIKLRIHSIQAELR-RLLKS 240
Query: 130 TPEDRPLIIQRTIFPRLGSPRFILAPMVDASELPWRLL--SRRYGSHLCYTPMVSAHQFI 187
P + L++ + + + +A L ++L +R + + H +
Sbjct: 241 KPYENCLLVLLNVQ----NAK-----AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 188 ADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRG 246
+ ++ E + L++++ ++L P I
Sbjct: 292 DHHSM----TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-------------- 333
Query: 247 HYGAYLQDD---W-PLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLL 302
++D W L ++ + +V + EY +M +R L
Sbjct: 334 --AESIRDGLATWDNWKHVNCDKLTTIIESSL--------NVLEPAEYRKMFDR-----L 378
Query: 303 AVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362
+V + HI L++ + + + V L + +
Sbjct: 379 SVFPPSA-------------HIPT--ILLSL-IWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 363 EGNLYNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDVRL 422
E + P+++ + + +V Y + + L+ +
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD-------SDDLIPPYLDQYFYS 475
Query: 423 LVGKTNHIKDLRKA--VDMLRERFIDYH-EGRKL 453
+G +H+K++ + + R F+D+ +K+
Sbjct: 476 HIG--HHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 35.6 bits (82), Expect = 0.037
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 211 CGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSS-LRQ 268
C + + E ++ AE D +++N+ CP + +RG A QD P L + +RQ
Sbjct: 643 CSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQD--PELVRNICRWVRQ 700
Query: 269 AVQVPVSCKI 278
AVQ+P K+
Sbjct: 701 AVQIPFFAKL 710
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 35.3 bits (82), Expect = 0.044
Identities = 10/79 (12%), Positives = 17/79 (21%), Gaps = 14/79 (17%)
Query: 287 TVEYARMLERAGCQLLAVHGR--------TVDQRGMNTGLASWEHITAVRKALTIPVIAN 338
R L G G + ++K T PV+
Sbjct: 246 IEGVLRELGELPDLWDFAMGSWEGDSVTSRFAPEGRQEEFVA-----GLKKLTTKPVVGV 300
Query: 339 GNIQCLADVEACLAQTGVA 357
G + + G+
Sbjct: 301 GRFTSPDAMVRQIKA-GIL 318
Score = 31.1 bits (71), Expect = 0.98
Identities = 13/111 (11%), Positives = 26/111 (23%), Gaps = 29/111 (26%)
Query: 202 EDRPLIIQFC-------GNDSKNLTEAAKLAEPHCDGIDINIGC------PQMVAKRGHY 248
+ + G +++ + D D +G A G
Sbjct: 223 GRAAVACRITVEEEIDGGITREDIEGVLRELGELPDLWDFAMGSWEGDSVTSRFAPEGRQ 282
Query: 249 GAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGC 299
V+ L++ PV R + + +AG
Sbjct: 283 -----------EEFVAGLKKLTTKPVVGVGRF-----TSPDAMVRQIKAGI 317
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.047
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 115 QFIADKKLRQEILMSTPEDRP-LIIQRTI 142
Q + KKL+ + + + P L I+ T+
Sbjct: 20 QAL--KKLQASLKLYADDSAPALAIKATM 46
Score = 28.8 bits (63), Expect = 2.4
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 185 QFIADKKLRQEILMSTPEDRP-LIIQ 209
Q + KKL+ + + + P L I+
Sbjct: 20 QAL--KKLQASLKLYADDSAPALAIK 43
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine
biosynthesis, fumarate reductase, energy metabolism,
redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A
{Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A*
2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Length = 314
Score = 34.5 bits (80), Expect = 0.069
Identities = 24/172 (13%), Positives = 53/172 (30%), Gaps = 32/172 (18%)
Query: 203 DRPLIIQFCGNDSK-NLTEAAKLAEPHCDGID---INIGCPQMVAKRGHYGAYLQDDWPL 258
+PL + G + N+ +LA + +N+ CP + K + D+
Sbjct: 93 KKPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKP-----QVAYDFEA 147
Query: 259 LTNLVSSLRQAVQVPVSCKIRIYQD-VNKTVEYARMLERAGCQLLA-----VHGRTVDQR 312
+ + + A +P K+ Y D + A + E + + +G +D
Sbjct: 148 MRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAE 207
Query: 313 GMNTGLA----------------SWEHITAVRKAL-TIPVIANGNIQCLADV 347
+ + + ++ A + V G + D
Sbjct: 208 SESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVFGCGGVYSGEDA 259
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino]
imidazole-4-carboxamide...; TIM alpha/beta barrel; HET:
CIT; 1.30A {Saccharomyces cerevisiae}
Length = 260
Score = 34.0 bits (78), Expect = 0.072
Identities = 14/102 (13%), Positives = 35/102 (34%), Gaps = 6/102 (5%)
Query: 283 DVNKTVEYARMLERAGCQLLAVHGRTVD--QRGMNTGLASWEHITAVRKALTIPVIANGN 340
D+ + R L +H V+ G++ L S + + + ++ G
Sbjct: 156 DLELNADTFRELR-KYTNEFLIHAADVEGLCGGIDELLVS-KLFEWTKDYDDLKIVYAGG 213
Query: 341 IQCLADVEAC--LAQTGVAGVMTAEGNLYNPALFTGQTRPAW 380
+ + D++ L+ V + +++ L + W
Sbjct: 214 AKSVDDLKLVDELSHGKVDLTFGSSLDIFGGNLVKFEDCCRW 255
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN;
2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A*
3bw3_A*
Length = 369
Score = 34.2 bits (79), Expect = 0.075
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 10/82 (12%)
Query: 287 TVEYARMLERAGCQLLAVHGR---------TVDQRGMNTGLASWEHITAVRKALTIPVIA 337
T E AR +E AG + G G+ + VR+A+ IPV+A
Sbjct: 154 TPEEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVA 213
Query: 338 NGNIQCLADVEACLAQTGVAGV 359
G I + A LA G
Sbjct: 214 AGGIMRGGQIAAVLAA-GADAA 234
>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: CIT; 1.65A {Thermotoga
maritima} SCOP: c.1.29.1
Length = 188
Score = 32.7 bits (75), Expect = 0.14
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368
RK VIA G ++ + L V+ + T+ L+
Sbjct: 144 ARKIPGRTVIAAGLVETEEEAREILK--HVSAISTSSRILWK 183
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 33.9 bits (78), Expect = 0.14
Identities = 7/78 (8%), Positives = 20/78 (25%), Gaps = 8/78 (10%)
Query: 287 TVEYARMLERAGCQLLAVHGRTVDQRG------MNTGLASWEHITA-VRKALTIPVIANG 339
+ + + + + + + G V++ PV+ G
Sbjct: 239 DGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVG 298
Query: 340 NIQCLADVEACLAQTGVA 357
+ + + G A
Sbjct: 299 RYTDPEKMIEIVTK-GYA 315
>3gz3_A Dihydroorotate dehydrogenase, putative; dhodh, oxidoreductase; HET:
FMN ORO; 1.90A {Leishmania major} PDB: 3gye_A*
Length = 354
Score = 33.4 bits (77), Expect = 0.17
Identities = 12/80 (15%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 203 DRPLIIQFCGND-SKNLTEAAKLAEPHCDGID---INIGCPQMVAKRGHYGAYLQDDWPL 258
+PL + G +N+ +LA + +N+ CP + K + D+
Sbjct: 126 KKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQ-----VAYDFDA 180
Query: 259 LTNLVSSLRQAVQVPVSCKI 278
+ ++++ + K+
Sbjct: 181 MRQCLTAVSEVYPHSFGVKM 200
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Length = 326
Score = 33.0 bits (76), Expect = 0.21
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 287 TVEYARMLERAGCQLLAVHGRTVDQRGMNTG-LASWEHITAVRKALTIPVIANGNIQCLA 345
+ ARM+ERAG + G + G + G + ++ + V +++ IPVIA G I
Sbjct: 133 SDSLARMVERAGADAVIAEGM---ESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGR 189
Query: 346 DVEACLAQTGVAGV 359
+ A A G V
Sbjct: 190 GMAAAFAL-GAEAV 202
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf;
substrate channeling, amidotransferase, TIM-barrel AS A
SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae}
SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A
1ox4_A
Length = 555
Score = 33.2 bits (76), Expect = 0.23
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 324 ITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362
I V+ A+ IPVIA+ E +T + A
Sbjct: 488 IEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGA 526
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase,
2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A
{Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Length = 328
Score = 32.3 bits (74), Expect = 0.30
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 21/83 (25%)
Query: 287 TVEYARMLERAGCQLLAV-------HGRTVDQRGMNTGLASWEHITAVRKALTIPVIANG 339
V +A ER G +++ H D G+ + A L +P+IA+G
Sbjct: 127 AVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVL-------LPAAANRLRVPIIASG 179
Query: 340 NIQCLADVE---ACLAQTGVAGV 359
AD A LA G +
Sbjct: 180 GF---ADGRGLVAALAL-GADAI 198
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics,
oxidoreductase, flavoprotein; HET: FMN; 1.70A
{Streptococcus pneumoniae} PDB: 2z6j_A*
Length = 332
Score = 31.9 bits (73), Expect = 0.47
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 287 TVEYARMLERAGCQLLAVHGRTVDQRGMNTG-LASWEHITAVRKALTIPVIANGNIQCLA 345
+V A+ +E+ G + G + G + G L + + V A++IPVIA G I
Sbjct: 119 SVALAKRMEKIGADAVIAEGM---EAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGE 175
Query: 346 DVEACLAQTGVAGV 359
A G V
Sbjct: 176 GAAAGFML-GAEAV 188
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 32.2 bits (73), Expect = 0.51
Identities = 32/155 (20%), Positives = 54/155 (34%), Gaps = 26/155 (16%)
Query: 291 ARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIA--NGNIQCLADVE 348
A +E+ G RT Q+ M L V PV+A NG +Q + +++
Sbjct: 686 AEGIEKMGV-------RTFSQKEMAFNLLGLLTPEVVELCQKSPVMADLNGGLQFVPELK 738
Query: 349 ACLAQTGVAGVMTAEGNLYNPALFTGQTRPA--WELASEYLDLVAQYPVRLQYARGHVFN 406
A+ L + T + R A E A E+ +V YA+ +
Sbjct: 739 EFTAK------------LRKELVETSEVRKAVSIETALEH-KVVNGNSADAAYAQVEIQP 785
Query: 407 MCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLR 441
+ L PE + + +L +D+ R
Sbjct: 786 RANIQLDFPELKPYKQVKQIAP--AELEGLLDLER 818
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion
protein, cobalamin, precorrin, novel fold, VIT; 2.10A
{Thermotoga maritima}
Length = 266
Score = 30.6 bits (70), Expect = 1.1
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 8/37 (21%)
Query: 324 ITAVRKALTIPVIAN---GNIQCLADV-----EACLA 352
I VR T+P+IA+ G ++ + +A LA
Sbjct: 192 IRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALA 228
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication;
2.00A {Haloferax volcanii} PDB: 3hi8_A
Length = 247
Score = 30.3 bits (67), Expect = 1.1
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 121 KLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVD 158
E+ + E+ P+ + I +G+ ++LAP +
Sbjct: 208 PTDAEVTVELGEEFPVKLHYQIAEGMGTITYMLAPRIQ 245
>2qiw_A PEP phosphonomutase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc
13032}
Length = 255
Score = 30.3 bits (69), Expect = 1.2
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 15/82 (18%)
Query: 291 ARMLERAGCQLLAVHGRTV-DQRGM-NTGLASWE----HITAVRKALTIPVIA---NG-- 339
A ++E AG L + V D G + ++ + + A++IPV +G
Sbjct: 33 AGLVEEAGFSGLTIGSHPVADATGSSDGENMNFADYMAVVKKITSAVSIPVSVDVESGYG 92
Query: 340 -NIQCLADVEACLAQTGVAGVM 360
+ AD+ A + + G G+
Sbjct: 93 LSP---ADLIAQILEAGAVGIN 111
>1nps_A Development-specific protein S; crystalline like structure,
signaling protein; 1.80A {Myxococcus xanthus} SCOP:
b.11.1.1
Length = 88
Score = 28.6 bits (64), Expect = 1.2
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN 285
Q+ G+Y + N +SS++ VP K +YQ+
Sbjct: 15 QVDLPPGNYTRAQLAALGIENNTISSVK----VPPGVKAILYQNDG 56
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum
aerophilum} SCOP: c.1.2.1
Length = 253
Score = 30.1 bits (69), Expect = 1.2
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 8/37 (21%)
Query: 324 ITAVRKALTIPVIANG---NIQCLADV-----EACLA 352
I V ++ IPVIA+G ++ + +A LA
Sbjct: 190 IRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLA 226
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur
protein, non-mevalonate pathway, terpene biosynt
isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Length = 366
Score = 30.6 bits (70), Expect = 1.2
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 11/56 (19%)
Query: 283 DVNKTVEYARMLERAGCQLLAVHGRTV-DQRGMNTGLASWEHITAVRKALTIPVIA 337
DV T+ + L AGC+++ V V + E + + K +PVIA
Sbjct: 44 DVEATLNQIKRLYEAGCEIVRV---AVPHK-------EDVEALEEIVKKSPMPVIA 89
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF,
half barrel, de novo protein; 3.10A {Thermotoga
maritima} PDB: 2lle_A
Length = 237
Score = 30.2 bits (69), Expect = 1.3
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 8/39 (20%)
Query: 322 EHITAVRKALTIPVIAN---GNIQCLADV-----EACLA 352
E I VR T+P+IA+ G ++ + +A LA
Sbjct: 164 EMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALA 202
>3sny_A Clostrillin; calcium-bound betagamma-crystallin, metal binding
protein; 1.85A {Clostridium beijerinckii} PDB: 3so1_A
3so0_A 3snz_A 3i9h_A 3iaj_A
Length = 97
Score = 28.7 bits (64), Expect = 1.3
Identities = 8/46 (17%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN 285
+ + G+Y + + + ++SL+ VP + +Y++ N
Sbjct: 18 SVSLQPGNYTLSQLNTAKIPNDWMTSLK----VPSGWTVDVYENDN 59
>1prr_A Development-specific protein S; binding protein; NMR {Myxococcus
xanthus} SCOP: b.11.1.1 b.11.1.1 PDB: 1prs_A
Length = 173
Score = 29.5 bits (66), Expect = 1.5
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNKT 287
Q+ G+Y + N +SS++ VP K +YQ+
Sbjct: 16 QVDLPPGNYTRAQLAALGIENNTISSVK----VPPGVKAILYQNDGFA 59
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transferase; 2.30A {Thermus thermophilus}
SCOP: c.1.2.1
Length = 252
Score = 29.7 bits (68), Expect = 1.5
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 8/37 (21%)
Query: 324 ITAVRKALTIPVIANG---NIQCLADV-----EACLA 352
V +A+ +PVIA+G ++ + EA LA
Sbjct: 188 TRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALA 224
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis,
lyase, phosphate-binding sites; 1.45A {Thermotoga
maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A
1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Length = 253
Score = 29.7 bits (68), Expect = 1.7
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 8/37 (21%)
Query: 324 ITAVRKALTIPVIANG---NIQCLADV-----EACLA 352
I VR T+P+IA+G ++ + +A LA
Sbjct: 187 IRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALA 223
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor,
replication; HET: DNA; 1.80A {Archaeoglobus fulgidus}
SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A*
Length = 245
Score = 29.6 bits (65), Expect = 2.0
Identities = 5/38 (13%), Positives = 14/38 (36%)
Query: 121 KLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVD 158
+ + + P+ + + +ILAP ++
Sbjct: 206 GSGDLLTIHLGTNYPVRLVFELVGGRAKVEYILAPRIE 243
>2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics,
protein structure initiative; 1.60A {Thermobifida fusca}
PDB: 2qvh_A*
Length = 327
Score = 29.7 bits (67), Expect = 2.0
Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 36/145 (24%)
Query: 221 AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRI 280
A +A C + K G +D V ++R A+ + R+
Sbjct: 85 ARIVASSGCTTAKV---------KVAERGQSEAND----VARVEAVRDALG----PRGRV 127
Query: 281 YQDVN------KTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIP 334
DVN V R+L+R + V+Q A+ + + VR+ +++P
Sbjct: 128 RIDVNGAWDVDTAVRMIRLLDRFELEY-------VEQP-----CATVDELAEVRRRVSVP 175
Query: 335 VIANGNIQCLADVEACLAQTGVAGV 359
+ A+ +I+ D + A V
Sbjct: 176 IAADESIRRAEDPLR-VRDAEAADV 199
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing
enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas
putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A*
2a7p_A* 2a85_A* 2a7n_A*
Length = 380
Score = 29.8 bits (68), Expect = 2.2
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 287 TVEYARMLERAGCQLLAV--HG-RTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQC 343
+ E A G + + HG R +D ++ E + PV+ + +
Sbjct: 235 SAEDADRCIAEGADGVILSNHGGRQLD-----CAISPMEVLAQSVAKTGKPVLIDSGFRR 289
Query: 344 LADVEACLA 352
+D+ LA
Sbjct: 290 GSDIVKALA 298
>1wxa_A Afadin, AF-6 protein; RAS-binding domain, ubiquitin-like fold,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
d.15.1.5
Length = 116
Score = 28.3 bits (63), Expect = 2.2
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 105 LCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFIL 153
+ + Q ++ ++ IL ++ PL I R G F L
Sbjct: 59 IARVMLPPGAQHSDERGAKEIILD--DDECPLQIFREWPSDKGILVFQL 105
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp,
DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo
sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A
1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A*
3p87_A 3vkx_A*
Length = 261
Score = 29.6 bits (65), Expect = 2.3
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 121 KLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVDASE 161
L + +S D PL+++ I +G ++ LAP ++ E
Sbjct: 220 PLSSTVTLSMSADVPLVVEYKI-ADMGHLKYYLAPKIEDEE 259
>1bd7_A Circularly permuted BB2-crystallin; eye-lens protein,
beta-crystallin B, multigene family; 2.78A {Rattus
norvegicus} SCOP: b.11.1.1
Length = 176
Score = 29.0 bits (65), Expect = 2.5
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 240 QMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN 285
Q + ++G Y D+ V S+R+ + + KI I++ N
Sbjct: 58 QYLLEKGDYKDN--SDFGAPHPQVQSVRRIRDMQGNPKIIIFEQEN 101
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic,
ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase;
HET: AKG; 1.65A {Deinococcus ficus}
Length = 275
Score = 29.2 bits (66), Expect = 3.2
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 12/82 (14%)
Query: 291 ARMLERAGCQLLAVHGRTV-DQRGM-NTGLASWE----HITAVRKALTIPVIA---NG-- 339
AR+LE AG + + RG + + + + A+ +A+ IPV A G
Sbjct: 29 ARLLEAAGFTAIGTTSAGIAHARGRTDGQTLTRDEMGREVEAIVRAVAIPVNADIEAGYG 88
Query: 340 -NIQCLADVEACLAQTGVAGVM 360
+ + A GVAGV
Sbjct: 89 HAPEDVRRTVEHFAALGVAGVN 110
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo
protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Length = 247
Score = 29.0 bits (66), Expect = 3.4
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 324 ITAVRKALTIPVIANG---NIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371
I VR T+P+IA+G ++ + G V + NP+L
Sbjct: 192 IRFVRPLTTLPIIASGGAGKMEHFLEA----FLRGADKVSINTAAVENPSL 238
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex,
replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB:
3aix_A*
Length = 246
Score = 28.8 bits (63), Expect = 3.8
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 121 KLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVD 158
K + ++ PL ++ + P+ G F +AP +
Sbjct: 210 KPSDTVEIAFGSQIPLKLRYNL-PQGGYADFYIAPRAE 246
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity,
sliding clamp, DNA binding protein; 1.80A {Pyrococcus
furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A
1ge8_A 1isq_A 3lx1_A*
Length = 249
Score = 28.8 bits (63), Expect = 3.9
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 114 HQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVD 158
+ E+ + + P+ ++ I G F+LAP V+
Sbjct: 205 SDMVKGLGKADEVTIKFGNEMPMQMEYYI-RDEGRLTFLLAPRVE 248
>2v8t_A Manganese-containing pseudocatalase; manganese catalase,
oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A
2cwl_A
Length = 302
Score = 28.2 bits (62), Expect = 5.7
Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 16/104 (15%)
Query: 362 AEGNLYNPALFTGQTRPAWELASEYLDLVAQYPVRLQYARGHVFNMCHHLLTLPENSDV- 420
A G +N +L + + R R V+ M + P ++
Sbjct: 128 AMGEHWNGEYVFTSGNLILDLLH---NFFLEVAARTHKLR--VYEMTDN----PVAREMI 178
Query: 421 -RLLVGKTNHIKDLRKAVDMLRERFIDYHEGRKLWPPPNYPMSS 463
LLV H KA++ L E K+ P P S
Sbjct: 179 GYLLVRGGVHAAAYGKALESLTG-----VEMTKMLPIPKIDNSK 217
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric
acid cycle, heat- like domain, lyase; HET: TRA; 2.40A
{Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Length = 865
Score = 28.6 bits (64), Expect = 6.2
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 4/32 (12%)
Query: 427 TNHIKDLRKAVDMLRERFIDYHEGRKLW--PP 456
+I R A +L +LW PP
Sbjct: 711 MTNIGHFRAAGKLLDAHKG--QLPTRLWVAPP 740
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus
subtilis} PDB: 3qh2_A*
Length = 221
Score = 27.6 bits (62), Expect = 7.0
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359
++ +++ ++IPVIA G + + G G+
Sbjct: 154 SLLSDIKQRISIPVIAIGGMT-PDRLRDVKQ-AGADGI 189
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides,
nucleotides, nucleo nucleoside interconversions, spine,
structural genomics; 1.80A {Bacillus anthracis} PDB:
2a1y_A*
Length = 336
Score = 28.0 bits (63), Expect = 7.8
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 324 ITAVR---KALTIPVIANGNIQCLADVEACLAQTGVAGVM 360
+ A+R KA + P+IA+G I+ DV + G VM
Sbjct: 199 LAALRWCAKAASKPIIADGGIRTNGDVAKSIR-FGATMVM 237
>1oki_A Beta crystallin B1; cataract, eye lens protein; 1.4A {Homo sapiens}
SCOP: b.11.1.1 b.11.1.1
Length = 210
Score = 27.5 bits (61), Expect = 8.1
Identities = 7/47 (14%), Positives = 17/47 (36%)
Query: 239 PQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVN 285
+ ++G Y + ++ + S R KI +++ N
Sbjct: 70 EMFILEKGEYPRWNTWSSSYRSDRLMSFRPIKMDAQEHKISLFEGAN 116
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide
complex, DNA replication, DNA-binding, nucleus, DNA
binding protein; 2.00A {Arabidopsis thaliana} PDB:
2zvw_A
Length = 276
Score = 27.7 bits (60), Expect = 8.6
Identities = 8/38 (21%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 121 KLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVD 158
L + +S + P++++ + +G R+ LAP ++
Sbjct: 240 PLSDTVTISLSSELPVVVEYKV-AEMGYIRYYLAPKIE 276
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics,
southeast collaboratory for structural genomics,
hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP:
c.1.3.1
Length = 215
Score = 27.2 bits (61), Expect = 9.7
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 322 EHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGV 359
E + + +++ IPV+A G I + + +TGV G+
Sbjct: 152 EGLRKIVESVKIPVVAIGGIN-KDNARE-VLKTGVDGI 187
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.434
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,787,078
Number of extensions: 473096
Number of successful extensions: 1152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1127
Number of HSP's successfully gapped: 83
Length of query: 487
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 390
Effective length of database: 3,993,456
Effective search space: 1557447840
Effective search space used: 1557447840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.5 bits)