RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7343
(487 letters)
>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096
{Thermotoga maritima [TaxId: 2336]}
Length = 305
Score = 131 bits (329), Expect = 3e-35
Identities = 65/302 (21%), Positives = 116/302 (38%), Gaps = 18/302 (5%)
Query: 150 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 209
+ LAPM ++ +R L+ +G+ ++ MVSA F+ + + + E L+ P +R + +Q
Sbjct: 2 KVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQ-KTEELLPQPHERNVAVQ 60
Query: 210 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQA 269
G++ L+EAA++ ID+N GCP + G L D +V LR++
Sbjct: 61 IFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKS 120
Query: 270 VQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRK 329
V S K R+ + N+ E R+L G + +H + + + E
Sbjct: 121 VSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHT----RTVVQSFTGRAEWKALSVL 176
Query: 330 ALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDL 389
IP +G+I D + L ++G G++ A G + P +F
Sbjct: 177 EKRIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSR 236
Query: 390 VAQYPVRLQYA---------RGHVFNMCHHLLTL----PENSDVRLLVGKTNHIKDLRKA 436
++ R V M L R V K ++ L++
Sbjct: 237 EEILRTFERHLELLIKTKGERKAVVEMRKFLAGYTKDLKGARRFREKVMKIEEVQILKEM 296
Query: 437 VD 438
Sbjct: 297 FY 298
Score = 66.5 bits (161), Expect = 9e-13
Identities = 22/172 (12%), Positives = 46/172 (26%), Gaps = 7/172 (4%)
Query: 80 RFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQ 139
+ LAPM ++ +R L+ +G+ ++ MVSA F+ + + + E L+ P +R + +Q
Sbjct: 2 KVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQ-KTEELLPQPHERNVAVQ 60
Query: 140 RTIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMS 199
+ + R +
Sbjct: 61 IFGSEPNELSEAARILSEKYKWIDLNA---GCPVRKVVKEGAGGALLKDLRHFRYIVREL 117
Query: 200 TPEDRPLIIQFCG---NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHY 248
++ L E D + I+
Sbjct: 118 RKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAE 169
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme B [TaxId: 1358]}
Length = 311
Score = 56.9 bits (136), Expect = 2e-09
Identities = 43/250 (17%), Positives = 74/250 (29%), Gaps = 38/250 (15%)
Query: 141 TIFPRLGSPRFILAPMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMST 200
T+ PR G+P R+ G + I +KL
Sbjct: 51 TLHPRFGNPT-------------PRVAETASGMLNAIGLQNPGLEVIMTEKLPWLNENFP 97
Query: 201 PEDRPLIIQFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 260
+ A + I++NI CP + + D +
Sbjct: 98 ELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAF----GTDPEVAA 153
Query: 261 NLVSSLRQAVQVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQR-------- 312
LV + + +VP+ K + +V V A+ +E AG L + + R
Sbjct: 154 ALVKACKAVSKVPLYVK--LSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQP 211
Query: 313 ----------GMNTGLASWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTA 362
G + + I V + + IP+I G + DV G + V
Sbjct: 212 ILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQDVLEMY-MAGASAVAVG 270
Query: 363 EGNLYNPALF 372
N +P +
Sbjct: 271 TANFADPFVC 280
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 55.0 bits (131), Expect = 7e-09
Identities = 40/238 (16%), Positives = 71/238 (29%), Gaps = 25/238 (10%)
Query: 155 PMVDASELPWRLLSRRYGSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGND 214
P + + S L + + + + I N
Sbjct: 56 PRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNK 115
Query: 215 SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPV 274
+ + + K D +++N+ CP + +RG D L+ N+ +RQAVQ+P
Sbjct: 116 NDWMELSRKAEASGADALELNLSCPHGMGERGMGL-ACGQDPELVRNICRWVRQAVQIPF 174
Query: 275 SCKIRIYQD------------------VNKTVEYARMLERAGCQLLAVHGRTVDQRGMNT 316
K+ TV L+ G AV G +
Sbjct: 175 FAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVS 234
Query: 317 GLA----SWEHITAVRKALT-IPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNP 369
G A + +T + +AL P++A G I L +G + +
Sbjct: 235 GTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLH-SGASVLQVCSAVQNQD 291
>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus
subtilis [TaxId: 1423]}
Length = 337
Score = 49.2 bits (116), Expect = 6e-07
Identities = 35/241 (14%), Positives = 71/241 (29%), Gaps = 20/241 (8%)
Query: 172 GSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEA---AKLAEPH 228
G + A IA + + + E +Q + EA
Sbjct: 106 GRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAA 165
Query: 229 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNK-- 286
+ P + YG ++ + L ++ ++Q P+ ++ +K
Sbjct: 166 HGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGL 225
Query: 287 ----TVEYARMLERAGCQLLAVHGRTVDQRGMNTG-LASWEHITAVRKALTIPVIANGNI 341
+ +A+ ++ G L+ + +N +R+ + A G I
Sbjct: 226 DIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMI 285
Query: 342 QCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLVAQYPVRLQYAR 401
+ E L + L +P A A + L + P +QY R
Sbjct: 286 TDGSMAEEILQNGRADLIFIGRELLRDPFF-------ARTAAKQ---LNTEIPAPVQYER 335
Query: 402 G 402
G
Sbjct: 336 G 336
>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 330
Score = 46.1 bits (108), Expect = 5e-06
Identities = 28/215 (13%), Positives = 63/215 (29%), Gaps = 15/215 (6%)
Query: 172 GSHLCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQFCGNDSKNLTEAAKLAEPHCDG 231
G + +V+ A +S E LI F E
Sbjct: 105 GRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSE 164
Query: 232 IDINIGCPQMVAKRG--HYGAYLQDDWPLLTNLVSSLRQAV--------QVPVSCKIRIY 281
+ + + +G ++ +V ++R+ V ++ + +
Sbjct: 165 GYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDG 224
Query: 282 QDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEH-----ITAVRKALTIPVI 336
+TVE A+ +E AG ++ + R ++ +++P++
Sbjct: 225 GTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLV 284
Query: 337 ANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371
I + L++ V A L + L
Sbjct: 285 TTNRINDPQVADDILSRGDADMVSMARPFLADAEL 319
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 43.3 bits (101), Expect = 2e-05
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 14/113 (12%)
Query: 280 IYQDVNKTVEYARMLERAGCQLLAV--HGRTVDQRGMNTGLASWEHITAVRKALTIPVIA 337
TVE A+ R G + HG T +G ++ + V +++ VIA
Sbjct: 121 EIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIA 180
Query: 338 NGNIQCLADVEACLAQTGVAGVMTAEGNLYNPALFTGQTRPAWELASEYLDLV 390
GN+ + + GV + TRP E+ ++ ++
Sbjct: 181 EGNVITPDMYKRVMD-LGVHCSVVG----------GAITRP-KEITKRFVQVM 221
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 41.8 bits (97), Expect = 8e-05
Identities = 15/87 (17%), Positives = 24/87 (27%), Gaps = 3/87 (3%)
Query: 287 TVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLAD 346
T + + +AG + I I VIA G I +
Sbjct: 139 TFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALI-EALCKAGIAVIAEGKIHSPEE 197
Query: 347 VEACLAQTGVAGVMTAEGNLYNPALFT 373
+ GVAG++ + P
Sbjct: 198 AKKIND-LGVAGIVVGGA-ITRPKEIA 222
>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of
imidazoleglycerolphosphate synthase HisF {Baker's yeast
(Saccharomyces cerevisiae), His7 [TaxId: 4932]}
Length = 323
Score = 41.3 bits (96), Expect = 2e-04
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 288 VEYARMLERAGCQLLAVHGRTVDQRGMNTGLASWEHITAVRKALTIPVIANGNIQCLADV 347
E R E G + ++ D E I V+ A+ IPVIA+
Sbjct: 223 WELTRACEALGAGEILLNCIDKDGSNSGY---DLELIEHVKDAVKIPVIASSGAGVPEHF 279
Query: 348 EACLAQTGVAGVMTA 362
E +T + A
Sbjct: 280 EEAFLKTRADACLGA 294
>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal
domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Length = 340
Score = 36.9 bits (84), Expect = 0.004
Identities = 19/187 (10%), Positives = 52/187 (27%), Gaps = 23/187 (12%)
Query: 208 IQFCGNDSKNLTEAAKLAEPHCDGIDINIGC-------PQMVAKRGHYGAYLQDDWPLLT 260
I + + ++ A + P + YG L++
Sbjct: 144 IAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWL 203
Query: 261 NLVSSLRQAVQVPVSCKIRIYQDVNK---------TVEYARMLERAGCQLLAVHGRTVDQ 311
+ ++ AV + R D + + + + + + +
Sbjct: 204 ETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAE 263
Query: 312 RGMNTGLA-------SWEHITAVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEG 364
G + G + + + V++ PV+ G + + + + A
Sbjct: 264 WGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARP 323
Query: 365 NLYNPAL 371
++ +P L
Sbjct: 324 SIADPFL 330
>d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related
protein TM1436 {Thermotoga maritima [TaxId: 2336]}
Length = 172
Score = 33.1 bits (76), Expect = 0.034
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 327 VRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYN 368
RK VIA G ++ + L V+ + T+ L+
Sbjct: 132 ARKIPGRTVIAAGLVETEEEAREILK--HVSAISTSSRILWK 171
>d1rwza2 d.131.1.2 (A:123-244) Proliferating cell nuclear antigen
(PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 122
Score = 32.2 bits (73), Expect = 0.045
Identities = 6/46 (13%), Positives = 17/46 (36%)
Query: 114 HQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFILAPMVDA 159
+F + + + P+ + + +ILAP +++
Sbjct: 77 KEFCKVAGSGDLLTIHLGTNYPVRLVFELVGGRAKVEYILAPRIES 122
>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida
[TaxId: 303]}
Length = 374
Score = 30.3 bits (67), Expect = 0.51
Identities = 15/135 (11%), Positives = 33/135 (24%), Gaps = 8/135 (5%)
Query: 244 KRGHYGAYLQDDWPLLTNLVSSLRQAVQVPVSCKIRIYQDVNK-----TVEYARMLERAG 298
+ YG +++ +V ++ + E
Sbjct: 201 RTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGE 260
Query: 299 CQLLAVHGRTVDQRGMNTGLASWEHITA--VRKALTIPVIANGNIQCLADVEACLAQTGV 356
+ ++ G ++ +R+ +I GN +A L
Sbjct: 261 LDRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKGGLIYCGNYD-AGRAQARLDDNTA 319
Query: 357 AGVMTAEGNLYNPAL 371
V + NP L
Sbjct: 320 DAVAFGRPFIANPDL 334
>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 27.6 bits (61), Expect = 0.80
Identities = 6/54 (11%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 398 QYA---RGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFIDYH 448
+Y + ++ + ++ R+ + H + +V +R + H
Sbjct: 18 RYKDNFTAAGYTTLEAVVHMSQDDLARIGITAITHQNKILSSVQAMRTQMQQMH 71
>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast
(Saccharomyces pastorianus) [TaxId: 27292]}
Length = 399
Score = 28.7 bits (63), Expect = 1.5
Identities = 10/46 (21%), Positives = 14/46 (30%)
Query: 326 AVRKALTIPVIANGNIQCLADVEACLAQTGVAGVMTAEGNLYNPAL 371
V PVI GN +V + + + NP L
Sbjct: 311 FVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDL 356
>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate
dehydrogenase (IMPDH) {Thermotoga maritima [TaxId:
2336]}
Length = 330
Score = 28.5 bits (63), Expect = 1.8
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 287 TVEYARMLERAG--CQLLAVHGRTVDQRGMNTGLASWE-----HITAVRKALTIPVIANG 339
T E L +AG + V ++ + G+ + + V + +P+IA+G
Sbjct: 149 TPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADG 208
Query: 340 NIQCLADVEACLA 352
I+ D+ LA
Sbjct: 209 GIRYSGDIVKALA 221
>d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387
{Mesorhizobium loti [TaxId: 381]}
Length = 197
Score = 27.9 bits (62), Expect = 1.9
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 16/89 (17%)
Query: 291 ARMLERAGCQLLAVHGRTV-------DQRGMNT-GLASWEHITAVRKALT----IPVI-- 336
A+ E L+ ++ G+ G A+ + R+ L PV+
Sbjct: 33 AKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAREVLPVVRHTPVLAG 92
Query: 337 --ANGNIQCLADVEACLAQTGVAGVMTAE 363
++ L + G AGV
Sbjct: 93 VNGTDPFMVMSTFLRELKEIGFAGVQNFP 121
>d2zjrd1 d.77.1.1 (D:3-179) Ribosomal protein L5 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 177
Score = 27.6 bits (61), Expect = 2.2
Identities = 7/51 (13%), Positives = 23/51 (45%)
Query: 271 QVPVSCKIRIYQDVNKTVEYARMLERAGCQLLAVHGRTVDQRGMNTGLASW 321
VP KI + + + + E ++ +++A +L + + ++++
Sbjct: 25 AVPRIEKIVVNEGLGSSKEDSKAIDKAAKELALITLQKPIITKAKKSISNF 75
>d1wxaa1 d.15.1.5 (A:8-110) Afadin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 103
Score = 26.0 bits (57), Expect = 4.3
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 105 LCYTPMVSAHQFIADKKLRQEILMSTPEDRPLIIQRTIFPRLGSPRFIL 153
+ + Q ++ ++ IL ++ PL I R G F L
Sbjct: 52 IARVMLPPGAQHSDERGAKEIILD--DDECPLQIFREWPSDKGILVFQL 98
>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 25.3 bits (55), Expect = 5.2
Identities = 6/55 (10%), Positives = 17/55 (30%), Gaps = 3/55 (5%)
Query: 398 QYA---RGHVFNMCHHLLTLPENSDVRLLVGKTNHIKDLRKAVDMLRERFIDYHE 449
+Y ++ +L + L + H K + ++ +R +
Sbjct: 21 RYRDHFAAGGYSSLGMVLRMNAQDVRALGITLMGHQKKILGSIQTMRAQLTSTQG 75
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.434
Gapped
Lambda K H
0.267 0.0572 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,892,682
Number of extensions: 88647
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 26
Length of query: 487
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 398
Effective length of database: 1,185,626
Effective search space: 471879148
Effective search space used: 471879148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.3 bits)