BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7344
(240 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|322780739|gb|EFZ09996.1| hypothetical protein SINV_07882 [Solenopsis invicta]
Length = 1167
Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 40/56 (71%), Positives = 45/56 (80%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FCGND L EAA LAEP+CD IDINIGCPQ +AKRGHYGA+LQDDW LL +V
Sbjct: 784 VQFCGNDPDILLEAAHLAEPYCDAIDINIGCPQAIAKRGHYGAFLQDDWDLLKKIV 839
Score = 76.3 bits (186), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 8/72 (11%)
Query: 36 AYLQDDWPLLTELVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGA 94
A +D PL+ + N P + + +AEP+CD IDINIGCPQ +AKRGHYGA
Sbjct: 774 ASTSEDRPLIVQFC-------GNDPDILLEAAHLAEPYCDAIDINIGCPQAIAKRGHYGA 826
Query: 95 YLQDDWPLLTEL 106
+LQDDW LL ++
Sbjct: 827 FLQDDWDLLKKI 838
Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/38 (76%), Positives = 34/38 (89%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
EP+CD IDINIGCPQ +AKRGHYGA+LQDDW LL ++V
Sbjct: 802 EPYCDAIDINIGCPQAIAKRGHYGAFLQDDWDLLKKIV 839
Score = 73.2 bits (178), Expect = 9e-11, Method: Composition-based stats.
Identities = 28/39 (71%), Positives = 34/39 (87%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+AEP+CD DINIGCPQ +AKRGHYGA+LQDDW LL ++
Sbjct: 800 LAEPYCDAIDINIGCPQAIAKRGHYGAFLQDDWDLLKKI 838
>gi|307182359|gb|EFN69626.1| tRNA-dihydrouridine synthase 1-like [Camponotus floridanus]
Length = 468
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 69/122 (56%), Gaps = 10/122 (8%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS-P 177
+ FCGND L EAA+LAEP+CD IDINIGCPQ +AKRGHYGA+LQDDW LL +V +
Sbjct: 82 VQFCGNDPDVLLEAARLAEPYCDAIDINIGCPQAIAKRGHYGAFLQDDWILLNRIVSTLK 141
Query: 178 NMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD-WPLLTELGKMAMLVGILDNTG 236
N +H + ++IN + Y LQD LLT G+ G L
Sbjct: 142 NGLHIPVTCKLRVFSEIN--------RTVEYARMLQDAGASLLTIHGRTREQKGSLTGLA 193
Query: 237 SW 238
SW
Sbjct: 194 SW 195
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
R A +D PL+ + N P + + +AEP+CD IDINIGCPQ +AKR
Sbjct: 67 RREALASTSEDRPLIVQFC-------GNDPDVLLEAARLAEPYCDAIDINIGCPQAIAKR 119
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYGA+LQDDW LL +
Sbjct: 120 GHYGAFLQDDWILLNRI 136
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/38 (76%), Positives = 33/38 (86%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
EP+CD IDINIGCPQ +AKRGHYGA+LQDDW LL +V
Sbjct: 100 EPYCDAIDINIGCPQAIAKRGHYGAFLQDDWILLNRIV 137
>gi|328789228|ref|XP_623799.3| PREDICTED: tRNA-dihydrouridine synthase 1-like isoform 2 [Apis
mellifera]
Length = 478
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 46/58 (79%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCGND L EAA LAEP+CD +DINIGCPQ +AKRGHYGA+LQDDW LL +V +
Sbjct: 89 VQFCGNDPSTLLEAALLAEPYCDAVDINIGCPQAIAKRGHYGAFLQDDWNLLQQIVST 146
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
LVV F + + +AEP+CD +DINIGCPQ +AKRGHYGA+LQDDW LL ++
Sbjct: 87 LVVQF--CGNDPSTLLEAALLAEPYCDAVDINIGCPQAIAKRGHYGAFLQDDWNLLQQI 143
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 35/42 (83%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
EP+CD +DINIGCPQ +AKRGHYGA+LQDDW LL ++V S
Sbjct: 107 EPYCDAVDINIGCPQAIAKRGHYGAFLQDDWNLLQQIVSTLS 148
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/40 (70%), Positives = 35/40 (87%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
++AEP+CD DINIGCPQ +AKRGHYGA+LQDDW LL ++
Sbjct: 104 LLAEPYCDAVDINIGCPQAIAKRGHYGAFLQDDWNLLQQI 143
>gi|380019158|ref|XP_003693481.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Apis florea]
Length = 477
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 46/58 (79%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCGND L EAA LAEP+CD +DINIGCPQ +AKRGHYGA+LQDDW LL +V +
Sbjct: 88 VQFCGNDPSTLLEAALLAEPYCDAVDINIGCPQAIAKRGHYGAFLQDDWDLLQQIVST 145
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
LVV F + + +AEP+CD +DINIGCPQ +AKRGHYGA+LQDDW LL ++
Sbjct: 86 LVVQF--CGNDPSTLLEAALLAEPYCDAVDINIGCPQAIAKRGHYGAFLQDDWDLLQQI 142
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 35/42 (83%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
EP+CD +DINIGCPQ +AKRGHYGA+LQDDW LL ++V S
Sbjct: 106 EPYCDAVDINIGCPQAIAKRGHYGAFLQDDWDLLQQIVSTLS 147
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 28/40 (70%), Positives = 35/40 (87%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
++AEP+CD DINIGCPQ +AKRGHYGA+LQDDW LL ++
Sbjct: 103 LLAEPYCDAVDINIGCPQAIAKRGHYGAFLQDDWDLLQQI 142
>gi|307206649|gb|EFN84621.1| tRNA-dihydrouridine synthase 1-like [Harpegnathos saltator]
Length = 304
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 48/58 (82%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCG+D + L EAA+LAEP+CD +DINIGCPQ +AKRGHYGA+LQDDW LL +V +
Sbjct: 88 VQFCGSDPEVLLEAARLAEPYCDAVDINIGCPQAIAKRGHYGAFLQDDWDLLQKIVST 145
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + + + +AEP+CD +DINIGCPQ +AKRGHYGA+LQDDW LL ++
Sbjct: 86 LIVQFC--GSDPEVLLEAARLAEPYCDAVDINIGCPQAIAKRGHYGAFLQDDWDLLQKI 142
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 34/39 (87%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
EP+CD +DINIGCPQ +AKRGHYGA+LQDDW LL ++V
Sbjct: 105 AEPYCDAVDINIGCPQAIAKRGHYGAFLQDDWDLLQKIV 143
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 34/39 (87%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+AEP+CD DINIGCPQ +AKRGHYGA+LQDDW LL ++
Sbjct: 104 LAEPYCDAVDINIGCPQAIAKRGHYGAFLQDDWDLLQKI 142
>gi|242003652|ref|XP_002422814.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]
gi|212505672|gb|EEB10076.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]
Length = 540
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 48/56 (85%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FCGN+ ++ +AA+LAEP+CD +DIN+GCPQ +AKRGHYGA+LQDDWPLL +V
Sbjct: 71 VQFCGNEPDSILKAAQLAEPYCDAVDINLGCPQAIAKRGHYGAFLQDDWPLLKEIV 126
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/39 (74%), Positives = 36/39 (92%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+AEP+CD +DIN+GCPQ +AKRGHYGA+LQDDWPLL E+
Sbjct: 87 LAEPYCDAVDINLGCPQAIAKRGHYGAFLQDDWPLLKEI 125
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/39 (74%), Positives = 35/39 (89%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
EP+CD +DIN+GCPQ +AKRGHYGA+LQDDWPLL E+V
Sbjct: 88 AEPYCDAVDINLGCPQAIAKRGHYGAFLQDDWPLLKEIV 126
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/39 (74%), Positives = 35/39 (89%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+AEP+CD DIN+GCPQ +AKRGHYGA+LQDDWPLL E+
Sbjct: 87 LAEPYCDAVDINLGCPQAIAKRGHYGAFLQDDWPLLKEI 125
>gi|443732865|gb|ELU17429.1| hypothetical protein CAPTEDRAFT_178407 [Capitella teleta]
Length = 463
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 30/115 (26%)
Query: 60 PLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSL 119
P+F P+F+ + + R A ++D PL+ +
Sbjct: 58 PMFHAPVFVRD---------------ASYRREALATCEEDRPLIVQ-------------- 88
Query: 120 MFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
FC ND + L +AAK AEPHCD ID+N+GCPQM+AKRGHYGAYLQ++W LL +V
Sbjct: 89 -FCANDPEILLKAAKYAEPHCDAIDLNLGCPQMIAKRGHYGAYLQEEWDLLERMV 142
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 6/76 (7%)
Query: 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRG 90
R A ++D PL+ + + + + + + AEPHCD ID+N+GCPQM+AKRG
Sbjct: 72 RREALATCEEDRPLIVQ------FCANDPEILLKAAKYAEPHCDAIDLNLGCPQMIAKRG 125
Query: 91 HYGAYLQDDWPLLTEL 106
HYGAYLQ++W LL +
Sbjct: 126 HYGAYLQEEWDLLERM 141
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 6/80 (7%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAE 70
EPHCD ID+N+GCPQM+AKRGHYGAYLQ++W LL +V S +K P+
Sbjct: 104 AEPHCDAIDLNLGCPQMIAKRGHYGAYLQEEWDLLERMV---SLCAKE---LKVPITCKI 157
Query: 71 PHCDGIDINIGCPQMVAKRG 90
D +D + QM+ K G
Sbjct: 158 RVFDDVDKTVQYAQMLEKAG 177
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 156 RGHYGAYLQDDWPLLTNLVYS-PNMVHFVI--AEPHCDGNDINIGCPQMVAKRGHYGAYL 212
R A ++D PL+ + P ++ AEPHCD D+N+GCPQM+AKRGHYGAYL
Sbjct: 72 RREALATCEEDRPLIVQFCANDPEILLKAAKYAEPHCDAIDLNLGCPQMIAKRGHYGAYL 131
Query: 213 QDDWPLLTEL 222
Q++W LL +
Sbjct: 132 QEEWDLLERM 141
>gi|196000454|ref|XP_002110095.1| hypothetical protein TRIADDRAFT_21776 [Trichoplax adhaerens]
gi|190588219|gb|EDV28261.1| hypothetical protein TRIADDRAFT_21776 [Trichoplax adhaerens]
Length = 427
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FCGND L +AAK+ EPHCD +D+N+GCPQ +AKRGHYGA+LQDDW LL +V
Sbjct: 70 VQFCGNDPDTLLKAAKIVEPHCDAVDLNLGCPQAIAKRGHYGAFLQDDWKLLEKIV 125
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 35/42 (83%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHF 52
EPHCD +D+N+GCPQ +AKRGHYGA+LQDDW LL ++V H
Sbjct: 87 VEPHCDAVDLNLGCPQAIAKRGHYGAFLQDDWKLLEKIVSHL 128
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 34/39 (87%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
I EPHCD +D+N+GCPQ +AKRGHYGA+LQDDW LL ++
Sbjct: 86 IVEPHCDAVDLNLGCPQAIAKRGHYGAFLQDDWKLLEKI 124
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 33/39 (84%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
I EPHCD D+N+GCPQ +AKRGHYGA+LQDDW LL ++
Sbjct: 86 IVEPHCDAVDLNLGCPQAIAKRGHYGAFLQDDWKLLEKI 124
>gi|158296576|ref|XP_316960.4| AGAP008484-PA [Anopheles gambiae str. PEST]
gi|157014776|gb|EAA12777.4| AGAP008484-PA [Anopheles gambiae str. PEST]
Length = 560
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 68/121 (56%), Gaps = 8/121 (6%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FCGND K + EAA LA+ HCD IDIN+GCPQ +AKRGHYGA+LQD+W LL +V +
Sbjct: 100 IQFCGNDPKIMLEAALLAQDHCDAIDINLGCPQAIAKRGHYGAFLQDEWELLREIV---S 156
Query: 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD-WPLLTELGKMAMLVGILDNTGS 237
+H +A P I + +AK Y LQD +LT G+ G L
Sbjct: 157 TLHRHLAIP----VTCKIRIFEDMAKTIRYARMLQDAGAQMLTVHGRTRDQKGPLTGLAD 212
Query: 238 W 238
W
Sbjct: 213 W 213
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 6/75 (8%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
+D PL+ + + + + + +A+ HCD IDIN+GCPQ +AKRGHYGA+LQD+
Sbjct: 94 EDRPLIIQ------FCGNDPKIMLEAALLAQDHCDAIDINLGCPQAIAKRGHYGAFLQDE 147
Query: 100 WPLLTELGFKTRSHM 114
W LL E+ H+
Sbjct: 148 WELLREIVSTLHRHL 162
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/36 (75%), Positives = 32/36 (88%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
HCD IDIN+GCPQ +AKRGHYGA+LQD+W LL E+V
Sbjct: 120 HCDAIDINLGCPQAIAKRGHYGAFLQDEWELLREIV 155
>gi|340716031|ref|XP_003396507.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Bombus terrestris]
Length = 479
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 45/58 (77%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCGND L EAA LAEP+CD +DINIGCPQ +AKRG YGA+LQDDW LL +V +
Sbjct: 90 VQFCGNDPNTLLEAALLAEPYCDAVDINIGCPQAIAKRGRYGAFLQDDWDLLRRIVST 147
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F N + +AEP+CD +DINIGCPQ +AKRG YGA+LQDDW LL +
Sbjct: 88 LIVQFCGNDPNT--LLEAALLAEPYCDAVDINIGCPQAIAKRGRYGAFLQDDWDLLRRI 144
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEP 71
EP+CD +DINIGCPQ +AKRG YGA+LQDDW LL +V S S P+ AE
Sbjct: 108 EPYCDAVDINIGCPQAIAKRGRYGAFLQDDWDLLRRIVSTLS-KSLRVPVTCKLRVFAE- 165
Query: 72 HCDGIDINIGCPQMVAKRG 90
ID + QM+ G
Sbjct: 166 ----IDKTVKYAQMLETAG 180
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Query: 165 DDWPLLTNLV-YSPNMV--HFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTE 221
+D PL+ PN + ++AEP+CD DINIGCPQ +AKRG YGA+LQDDW LL
Sbjct: 84 EDRPLIVQFCGNDPNTLLEAALLAEPYCDAVDINIGCPQAIAKRGRYGAFLQDDWDLLRR 143
Query: 222 L 222
+
Sbjct: 144 I 144
>gi|443725322|gb|ELU12971.1| hypothetical protein CAPTEDRAFT_132983, partial [Capitella teleta]
Length = 277
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 46/56 (82%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND + L +AAK AEPHCD ID+N+GCPQM+AKRGHYGAYLQ++W LL +V
Sbjct: 78 VQFCANDPEILLKAAKYAEPHCDAIDLNLGCPQMIAKRGHYGAYLQEEWDLLERMV 133
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 6/80 (7%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAE 70
EPHCD ID+N+GCPQM+AKRGHYGAYLQ++W LL +V S +K P+
Sbjct: 95 AEPHCDAIDLNLGCPQMIAKRGHYGAYLQEEWDLLERMV---SLCAKE---LKVPITCKI 148
Query: 71 PHCDGIDINIGCPQMVAKRG 90
D +D + QM+ K G
Sbjct: 149 RVFDDVDKTVQYAQMLEKAG 168
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 6/68 (8%)
Query: 39 QDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
++D PL+ + + + + + + AEPHCD ID+N+GCPQM+AKRGHYGAYLQ+
Sbjct: 71 EEDRPLIVQ------FCANDPEILLKAAKYAEPHCDAIDLNLGCPQMIAKRGHYGAYLQE 124
Query: 99 DWPLLTEL 106
+W LL +
Sbjct: 125 EWDLLERM 132
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 33/38 (86%)
Query: 185 AEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
AEPHCD D+N+GCPQM+AKRGHYGAYLQ++W LL +
Sbjct: 95 AEPHCDAIDLNLGCPQMIAKRGHYGAYLQEEWDLLERM 132
>gi|350396718|ref|XP_003484639.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Bombus impatiens]
Length = 492
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 45/58 (77%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCGND L EAA LAEP+CD +DINIGCPQ +AKRG YGA+LQDDW LL +V +
Sbjct: 103 VQFCGNDPNTLLEAALLAEPYCDAVDINIGCPQAIAKRGRYGAFLQDDWDLLRRIVST 160
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F N + +AEP+CD +DINIGCPQ +AKRG YGA+LQDDW LL +
Sbjct: 101 LIVQFCGNDPNT--LLEAALLAEPYCDAVDINIGCPQAIAKRGRYGAFLQDDWDLLRRI 157
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEP 71
EP+CD +DINIGCPQ +AKRG YGA+LQDDW LL +V S S P+ AE
Sbjct: 121 EPYCDAVDINIGCPQAIAKRGRYGAFLQDDWDLLRRIVSTLS-KSLRVPVTCKLRVFAE- 178
Query: 72 HCDGIDINIGCPQMVAKRG 90
ID + QM+ G
Sbjct: 179 ----IDKTVKYAQMLETAG 193
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Query: 165 DDWPLLTNLV-YSPNMV--HFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTE 221
+D PL+ PN + ++AEP+CD DINIGCPQ +AKRG YGA+LQDDW LL
Sbjct: 97 EDRPLIVQFCGNDPNTLLEAALLAEPYCDAVDINIGCPQAIAKRGRYGAFLQDDWDLLRR 156
Query: 222 L 222
+
Sbjct: 157 I 157
>gi|383855157|ref|XP_003703084.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Megachile rotundata]
Length = 478
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 45/58 (77%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCGND + EAA LAEP+CD +DINIGCPQ +AKRG YGA+LQDDW LL +V +
Sbjct: 88 VQFCGNDPNTILEAALLAEPYCDAVDINIGCPQAIAKRGRYGAFLQDDWDLLRRIVST 145
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F N + +AEP+CD +DINIGCPQ +AKRG YGA+LQDDW LL +
Sbjct: 86 LIVQFCGNDPNT--ILEAALLAEPYCDAVDINIGCPQAIAKRGRYGAFLQDDWDLLRRI 142
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 33/43 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
EP+CD +DINIGCPQ +AKRG YGA+LQDDW LL +V S
Sbjct: 105 AEPYCDAVDINIGCPQAIAKRGRYGAFLQDDWDLLRRIVSTLS 147
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 156 RGHYGAYLQDDWPLLTNLV-YSPNMV--HFVIAEPHCDGNDINIGCPQMVAKRGHYGAYL 212
R A +D PL+ PN + ++AEP+CD DINIGCPQ +AKRG YGA+L
Sbjct: 73 RREALASTAEDRPLIVQFCGNDPNTILEAALLAEPYCDAVDINIGCPQAIAKRGRYGAFL 132
Query: 213 QDDWPLLTEL 222
QDDW LL +
Sbjct: 133 QDDWDLLRRI 142
>gi|157127436|ref|XP_001654979.1| t-diRNAhydrouridine synthase [Aedes aegypti]
gi|108882414|gb|EAT46639.1| AAEL002182-PA [Aedes aegypti]
Length = 581
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 46/58 (79%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCGND K L EAA LA+ HCD IDIN+GCPQ +AKRGHYGA+LQD+W LL +V +
Sbjct: 152 IQFCGNDPKVLLEAALLAQDHCDAIDINLGCPQAIAKRGHYGAFLQDEWDLLKEIVST 209
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 6/67 (8%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
+D PL+ + + + + + +A+ HCD IDIN+GCPQ +AKRGHYGA+LQD+
Sbjct: 146 EDRPLIIQ------FCGNDPKVLLEAALLAQDHCDAIDINLGCPQAIAKRGHYGAFLQDE 199
Query: 100 WPLLTEL 106
W LL E+
Sbjct: 200 WDLLKEI 206
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/36 (75%), Positives = 32/36 (88%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
HCD IDIN+GCPQ +AKRGHYGA+LQD+W LL E+V
Sbjct: 172 HCDAIDINLGCPQAIAKRGHYGAFLQDEWDLLKEIV 207
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 34/40 (85%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
++A+ HCD DIN+GCPQ +AKRGHYGA+LQD+W LL E+
Sbjct: 167 LLAQDHCDAIDINLGCPQAIAKRGHYGAFLQDEWDLLKEI 206
>gi|195443038|ref|XP_002069246.1| GK21069 [Drosophila willistoni]
gi|194165331|gb|EDW80232.1| GK21069 [Drosophila willistoni]
Length = 519
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 47/58 (81%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCGNDS+ + EAA LA+ HCD IDIN+GCPQ +AKRGHYG++LQD+W LL +V +
Sbjct: 89 IQFCGNDSQQILEAALLAQGHCDAIDINLGCPQAIAKRGHYGSFLQDEWELLEKIVST 146
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 6/67 (8%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
+D PL+ + + + + +A+ HCD IDIN+GCPQ +AKRGHYG++LQD+
Sbjct: 83 EDRPLIIQ------FCGNDSQQILEAALLAQGHCDAIDINLGCPQAIAKRGHYGSFLQDE 136
Query: 100 WPLLTEL 106
W LL ++
Sbjct: 137 WELLEKI 143
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 32/36 (88%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
HCD IDIN+GCPQ +AKRGHYG++LQD+W LL ++V
Sbjct: 109 HCDAIDINLGCPQAIAKRGHYGSFLQDEWELLEKIV 144
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 34/40 (85%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
++A+ HCD DIN+GCPQ +AKRGHYG++LQD+W LL ++
Sbjct: 104 LLAQGHCDAIDINLGCPQAIAKRGHYGSFLQDEWELLEKI 143
>gi|198476736|ref|XP_002132430.1| GA25459 [Drosophila pseudoobscura pseudoobscura]
gi|198137829|gb|EDY69832.1| GA25459 [Drosophila pseudoobscura pseudoobscura]
Length = 507
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 49/58 (84%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCGND++ + +AA LA+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT++V +
Sbjct: 86 IQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTDIVRT 143
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 6/67 (8%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
+D PL+ + + + + +A+ HCD +DIN+GCPQ +AKRGHYG++LQD+
Sbjct: 80 EDRPLIIQ------FCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDE 133
Query: 100 WPLLTEL 106
W LLT++
Sbjct: 134 WELLTDI 140
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 33/36 (91%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT++V
Sbjct: 106 HCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTDIV 141
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 36/42 (85%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224
++A+ HCD DIN+GCPQ +AKRGHYG++LQD+W LLT++ +
Sbjct: 101 LLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTDIVR 142
>gi|195155541|ref|XP_002018662.1| GL25830 [Drosophila persimilis]
gi|194114815|gb|EDW36858.1| GL25830 [Drosophila persimilis]
Length = 507
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 49/58 (84%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCGND++ + +AA LA+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT++V +
Sbjct: 86 IQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTDIVRT 143
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 44/67 (65%), Gaps = 6/67 (8%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
+D PL+ + + + + +A+ HCD +DIN+GCPQ +AKRGHYG++LQD+
Sbjct: 80 EDRPLIIQ------FCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDE 133
Query: 100 WPLLTEL 106
W LLT++
Sbjct: 134 WELLTDI 140
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 34/39 (87%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT++V
Sbjct: 103 AQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTDIV 141
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 36/42 (85%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224
++A+ HCD DIN+GCPQ +AKRGHYG++LQD+W LLT++ +
Sbjct: 101 LLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTDIVR 142
>gi|195575487|ref|XP_002077609.1| GD22975 [Drosophila simulans]
gi|194189618|gb|EDX03194.1| GD22975 [Drosophila simulans]
Length = 505
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FCGND++ + +AA LA+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT +V +
Sbjct: 87 IQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIV---S 143
Query: 179 MVHFVIAEP 187
+H +A P
Sbjct: 144 TLHAKLAVP 152
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 6/67 (8%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
+D PL+ + + + + +A+ HCD +DIN+GCPQ +AKRGHYG++LQD+
Sbjct: 81 EDRPLIIQ------FCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDE 134
Query: 100 WPLLTEL 106
W LLTE+
Sbjct: 135 WELLTEI 141
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 33/36 (91%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
HCD +DIN+GCPQ +AKRGHYG++LQD+W LLTE+V
Sbjct: 107 HCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIV 142
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 35/40 (87%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
++A+ HCD DIN+GCPQ +AKRGHYG++LQD+W LLTE+
Sbjct: 102 LLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEI 141
>gi|195350041|ref|XP_002041550.1| GM16688 [Drosophila sechellia]
gi|194123323|gb|EDW45366.1| GM16688 [Drosophila sechellia]
Length = 503
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FCGND++ + +AA LA+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT +V +
Sbjct: 87 IQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIV---S 143
Query: 179 MVHFVIAEP 187
+H +A P
Sbjct: 144 TLHAKLAVP 152
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 6/67 (8%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
+D PL+ + + + + +A+ HCD +DIN+GCPQ +AKRGHYG++LQD+
Sbjct: 81 EDRPLIIQ------FCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDE 134
Query: 100 WPLLTEL 106
W LLTE+
Sbjct: 135 WELLTEI 141
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 33/36 (91%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
HCD +DIN+GCPQ +AKRGHYG++LQD+W LLTE+V
Sbjct: 107 HCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIV 142
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 35/40 (87%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
++A+ HCD DIN+GCPQ +AKRGHYG++LQD+W LLTE+
Sbjct: 102 LLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEI 141
>gi|19920448|ref|NP_608507.1| CG3645, isoform A [Drosophila melanogaster]
gi|24580595|ref|NP_722619.1| CG3645, isoform B [Drosophila melanogaster]
gi|442624911|ref|NP_001259809.1| CG3645, isoform C [Drosophila melanogaster]
gi|15292203|gb|AAK93370.1| LD42056p [Drosophila melanogaster]
gi|22945600|gb|AAF51525.2| CG3645, isoform A [Drosophila melanogaster]
gi|22945601|gb|AAN10512.1| CG3645, isoform B [Drosophila melanogaster]
gi|220955978|gb|ACL90532.1| CG3645-PA [synthetic construct]
gi|295293325|gb|ADF87928.1| MIP22167p [Drosophila melanogaster]
gi|440213055|gb|AGB92346.1| CG3645, isoform C [Drosophila melanogaster]
Length = 505
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FCGND++ + +AA LA+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT +V +
Sbjct: 87 IQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIV---S 143
Query: 179 MVHFVIAEP 187
+H +A P
Sbjct: 144 TLHAKLAVP 152
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 6/67 (8%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
+D PL+ + + + + +A+ HCD +DIN+GCPQ +AKRGHYG++LQD+
Sbjct: 81 EDRPLIIQ------FCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDE 134
Query: 100 WPLLTEL 106
W LLTE+
Sbjct: 135 WELLTEI 141
Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 33/36 (91%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
HCD +DIN+GCPQ +AKRGHYG++LQD+W LLTE+V
Sbjct: 107 HCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIV 142
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 35/40 (87%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
++A+ HCD DIN+GCPQ +AKRGHYG++LQD+W LLTE+
Sbjct: 102 LLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEI 141
>gi|194853320|ref|XP_001968141.1| GG24669 [Drosophila erecta]
gi|190660008|gb|EDV57200.1| GG24669 [Drosophila erecta]
Length = 505
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FCGND++ + +AA LA+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT +V +
Sbjct: 87 IQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIV---S 143
Query: 179 MVHFVIAEP 187
+H +A P
Sbjct: 144 TLHAKLAIP 152
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 6/67 (8%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
+D PL+ + + + + +A+ HCD +DIN+GCPQ +AKRGHYG++LQD+
Sbjct: 81 EDRPLIIQ------FCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDE 134
Query: 100 WPLLTEL 106
W LLTE+
Sbjct: 135 WELLTEI 141
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 33/36 (91%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
HCD +DIN+GCPQ +AKRGHYG++LQD+W LLTE+V
Sbjct: 107 HCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIV 142
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 35/40 (87%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
++A+ HCD DIN+GCPQ +AKRGHYG++LQD+W LLTE+
Sbjct: 102 LLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEI 141
>gi|195386396|ref|XP_002051890.1| GJ17247 [Drosophila virilis]
gi|194148347|gb|EDW64045.1| GJ17247 [Drosophila virilis]
Length = 504
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 46/58 (79%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCGND + + EAA A+ HCD +DIN+GCPQ +AKRGHYGA+LQD+W LLT +V +
Sbjct: 84 IQFCGNDPQQMLEAALAAQDHCDAVDINLGCPQAIAKRGHYGAFLQDEWQLLTQIVRT 141
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 35/41 (85%)
Query: 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ + HCD +DIN+GCPQ +AKRGHYGA+LQD+W LLT++V
Sbjct: 99 LAAQDHCDAVDINLGCPQAIAKRGHYGAFLQDEWQLLTQIV 139
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 34/40 (85%)
Query: 67 FIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
A+ HCD +DIN+GCPQ +AKRGHYGA+LQD+W LLT++
Sbjct: 99 LAAQDHCDAVDINLGCPQAIAKRGHYGAFLQDEWQLLTQI 138
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 35/42 (83%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224
+ A+ HCD DIN+GCPQ +AKRGHYGA+LQD+W LLT++ +
Sbjct: 99 LAAQDHCDAVDINLGCPQAIAKRGHYGAFLQDEWQLLTQIVR 140
>gi|195470200|ref|XP_002087396.1| GE16327 [Drosophila yakuba]
gi|194173497|gb|EDW87108.1| GE16327 [Drosophila yakuba]
Length = 505
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 53/69 (76%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FCGND++ + +AA LA+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT +V +
Sbjct: 87 IQFCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIV---S 143
Query: 179 MVHFVIAEP 187
+H +A P
Sbjct: 144 TLHAQLAIP 152
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 6/67 (8%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
+D PL+ + + + + +A+ HCD +DIN+GCPQ +AKRGHYG++LQD+
Sbjct: 81 EDRPLIIQ------FCGNDAQQILDAALLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDE 134
Query: 100 WPLLTEL 106
W LLTE+
Sbjct: 135 WELLTEI 141
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 33/36 (91%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
HCD +DIN+GCPQ +AKRGHYG++LQD+W LLTE+V
Sbjct: 107 HCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIV 142
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 35/40 (87%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
++A+ HCD DIN+GCPQ +AKRGHYG++LQD+W LLTE+
Sbjct: 102 LLAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEI 141
>gi|170034571|ref|XP_001845147.1| t-diRNAhydrouridine synthase [Culex quinquefasciatus]
gi|167875928|gb|EDS39311.1| t-diRNAhydrouridine synthase [Culex quinquefasciatus]
Length = 609
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 45/58 (77%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCGND K L EA LA+ HCD IDIN+GCPQ +AKRGHYGA+LQD+W LL +V +
Sbjct: 164 IQFCGNDPKVLLEAGLLAQDHCDAIDINLGCPQAIAKRGHYGAFLQDEWDLLKKIVST 221
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 34/40 (85%)
Query: 67 FIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+A+ HCD IDIN+GCPQ +AKRGHYGA+LQD+W LL ++
Sbjct: 179 LLAQDHCDAIDINLGCPQAIAKRGHYGAFLQDEWDLLKKI 218
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 32/36 (88%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
HCD IDIN+GCPQ +AKRGHYGA+LQD+W LL ++V
Sbjct: 184 HCDAIDINLGCPQAIAKRGHYGAFLQDEWDLLKKIV 219
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 34/40 (85%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
++A+ HCD DIN+GCPQ +AKRGHYGA+LQD+W LL ++
Sbjct: 179 LLAQDHCDAIDINLGCPQAIAKRGHYGAFLQDEWDLLKKI 218
>gi|312382630|gb|EFR28023.1| hypothetical protein AND_04540 [Anopheles darlingi]
Length = 708
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 68/122 (55%), Gaps = 6/122 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL-VYSP 177
+ FCGND K + +AA LA+ HCD IDIN+GCPQ +AKRGHYGA+LQD+W LL + +
Sbjct: 217 IQFCGNDPKVMLQAALLAQDHCDAIDINLGCPQAIAKRGHYGAFLQDEWELLREIGQQTM 276
Query: 178 NMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD-WPLLTELGKMAMLVGILDNTG 236
+ +H +A P I + ++K Y LQD LLT G+ G L
Sbjct: 277 STLHCHLAIPVT----CKIRIFEDMSKTIRYARMLQDAGAQLLTVHGRTREQKGPLTGLA 332
Query: 237 SW 238
W
Sbjct: 333 DW 334
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELG 107
L++ F + + + +A+ HCD IDIN+GCPQ +AKRGHYGA+LQD+W LL E+G
Sbjct: 215 LIIQF--CGNDPKVMLQAALLAQDHCDAIDINLGCPQAIAKRGHYGAFLQDEWELLREIG 272
Query: 108 FKTRSHMCGH 117
+T S + H
Sbjct: 273 QQTMSTLHCH 282
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 31/35 (88%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 48
HCD IDIN+GCPQ +AKRGHYGA+LQD+W LL E+
Sbjct: 237 HCDAIDINLGCPQAIAKRGHYGAFLQDEWELLREI 271
>gi|340373875|ref|XP_003385465.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Amphimedon
queenslandica]
Length = 465
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 65/119 (54%), Gaps = 8/119 (6%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
FC ND + L EAA+ E CD +DIN+GCPQ +AKRGHYGA+LQD+W L+ +V N++
Sbjct: 83 FCANDPQVLLEAARYVEEDCDAVDINLGCPQTIAKRGHYGAFLQDEWDLIAKMV---NLL 139
Query: 181 HFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD-WPLLTELGKMAMLVGILDNTGSW 238
H ++ P I + + K Y L+ LLT G+ G+L SW
Sbjct: 140 HCELSVP----VTCKIRVFEDIDKTVRYAKMLESAGCQLLTVHGRTRSQKGMLTGIASW 194
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 32/39 (82%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +DIN+GCPQ +AKRGHYGA+LQD+W L+ ++V
Sbjct: 98 VEEDCDAVDINLGCPQTIAKRGHYGAFLQDEWDLIAKMV 136
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
R A +D PL+ + N P + + E CD +DIN+GCPQ +AKR
Sbjct: 66 RRENFATCAEDRPLIAQFCA-------NDPQVLLEAARYVEEDCDAVDINLGCPQTIAKR 118
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYGA+LQD+W L+ ++
Sbjct: 119 GHYGAFLQDEWDLIAKM 135
>gi|353236428|emb|CCA68423.1| related to tRNA dihydrouridine synthase [Piriformospora indica DSM
11827]
Length = 433
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 46/56 (82%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FCGND + + E+AK+ EP+CD +DIN+GCPQ +AKRG+YGAYLQDDW L+ ++
Sbjct: 92 VQFCGNDPQQVLESAKILEPYCDAVDINLGCPQDIAKRGYYGAYLQDDWDLIYRII 147
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 33/38 (86%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
EP+CD +DIN+GCPQ +AKRG+YGAYLQDDW L+ ++
Sbjct: 110 EPYCDAVDINLGCPQDIAKRGYYGAYLQDDWDLIYRII 147
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 33/39 (84%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
I EP+CD +DIN+GCPQ +AKRG+YGAYLQDDW L+ +
Sbjct: 108 ILEPYCDAVDINLGCPQDIAKRGYYGAYLQDDWDLIYRI 146
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 32/39 (82%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
I EP+CD DIN+GCPQ +AKRG+YGAYLQDDW L+ +
Sbjct: 108 ILEPYCDAVDINLGCPQDIAKRGYYGAYLQDDWDLIYRI 146
>gi|195114456|ref|XP_002001783.1| GI15082 [Drosophila mojavensis]
gi|193912358|gb|EDW11225.1| GI15082 [Drosophila mojavensis]
Length = 510
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 47/58 (81%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCGND + + EAA A+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT++V +
Sbjct: 82 IQFCGNDPQQILEAALAAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTDIVRT 139
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 35/41 (85%)
Query: 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ + HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT++V
Sbjct: 97 LAAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTDIV 137
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 34/40 (85%)
Query: 67 FIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
A+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT++
Sbjct: 97 LAAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTDI 136
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 35/42 (83%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224
+ A+ HCD DIN+GCPQ +AKRGHYG++LQD+W LLT++ +
Sbjct: 97 LAAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTDIVR 138
>gi|91092412|ref|XP_967539.1| PREDICTED: similar to t-diRNAhydrouridine synthase [Tribolium
castaneum]
gi|270004747|gb|EFA01195.1| hypothetical protein TcasGA2_TC010522 [Tribolium castaneum]
Length = 461
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 45/56 (80%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FCGND K + EAA LA+ HC IDIN+GCPQ +AKRGHYGA+LQD+WPLL +V
Sbjct: 70 VQFCGNDPKVMLEAALLAQDHCCAIDINLGCPQAIAKRGHYGAFLQDEWPLLHEIV 125
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + + + +A+ HC IDIN+GCPQ +AKRGHYGA+LQD+WPLL E+
Sbjct: 68 LIVQF--CGNDPKVMLEAALLAQDHCCAIDINLGCPQAIAKRGHYGAFLQDEWPLLHEI 124
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/40 (70%), Positives = 33/40 (82%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
HC IDIN+GCPQ +AKRGHYGA+LQD+WPLL E+V S
Sbjct: 90 HCCAIDINLGCPQAIAKRGHYGAFLQDEWPLLHEIVSLLS 129
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 34/40 (85%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
++A+ HC DIN+GCPQ +AKRGHYGA+LQD+WPLL E+
Sbjct: 85 LLAQDHCCAIDINLGCPQAIAKRGHYGAFLQDEWPLLHEI 124
>gi|260801020|ref|XP_002595394.1| hypothetical protein BRAFLDRAFT_119015 [Branchiostoma floridae]
gi|229280640|gb|EEN51406.1| hypothetical protein BRAFLDRAFT_119015 [Branchiostoma floridae]
Length = 212
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L +AA LA+ HCD ID+N+GCPQ +A+RGHYGA+LQDDW L+ LV +
Sbjct: 79 VQFCANDPDILVQAALLAQDHCDAIDLNLGCPQSIARRGHYGAFLQDDWDLIRRLV---S 135
Query: 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD-WPLLTELGKMAMLVGILDNTGS 237
VH + P I Q V + Y L+ LLT G+ G L S
Sbjct: 136 AVHERCSVP----VTCKIRVFQDVKRTVEYAQMLEKAGCQLLTVHGRTKEQKGSLTGLAS 191
Query: 238 W 238
W
Sbjct: 192 W 192
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + + + + +A+ HCD ID+N+GCPQ +A+RGHYGA+LQDDW L+ L
Sbjct: 77 LIVQF--CANDPDILVQAALLAQDHCDAIDLNLGCPQSIARRGHYGAFLQDDWDLIRRL 133
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 32/39 (82%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ HCD ID+N+GCPQ +A+RGHYGA+LQDDW L+ LV
Sbjct: 96 AQDHCDAIDLNLGCPQSIARRGHYGAFLQDDWDLIRRLV 134
>gi|194765691|ref|XP_001964960.1| GF22874 [Drosophila ananassae]
gi|190617570|gb|EDV33094.1| GF22874 [Drosophila ananassae]
Length = 509
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 47/58 (81%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCGND++ + +AA A+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT +V +
Sbjct: 87 IQFCGNDAQQILDAALAAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIVST 144
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
LV+ F + + A+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLTE+
Sbjct: 85 LVIQF--CGNDAQQILDAALAAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEI 141
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 35/41 (85%)
Query: 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ + HCD +DIN+GCPQ +AKRGHYG++LQD+W LLTE+V
Sbjct: 102 LAAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIV 142
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 34/40 (85%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ A+ HCD DIN+GCPQ +AKRGHYG++LQD+W LLTE+
Sbjct: 102 LAAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEI 141
>gi|432872012|ref|XP_004072073.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like [Oryzias latipes]
Length = 882
Score = 84.3 bits (207), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 15/83 (18%)
Query: 92 YGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQ 151
Y ++D PL+T+ FC ND + +AA LA+ +CD +D+N+GCPQ
Sbjct: 66 YSEVCEEDRPLITQ---------------FCANDPEVFVQAALLAQDYCDAVDLNLGCPQ 110
Query: 152 MVAKRGHYGAYLQDDWPLLTNLV 174
M+AKRGHYG +LQD+W LL ++
Sbjct: 111 MIAKRGHYGVFLQDEWDLLERMI 133
Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 47/74 (63%), Gaps = 8/74 (10%)
Query: 34 YGAYLQDDWPLLTELVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHY 92
Y ++D PL+T+ N P +F+ +A+ +CD +D+N+GCPQM+AKRGHY
Sbjct: 66 YSEVCEEDRPLITQFCA-------NDPEVFVQAALLAQDYCDAVDLNLGCPQMIAKRGHY 118
Query: 93 GAYLQDDWPLLTEL 106
G +LQD+W LL +
Sbjct: 119 GVFLQDEWDLLERM 132
Score = 70.9 bits (172), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/71 (42%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 159 YGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD 215
Y ++D PL+T + V ++A+ +CD D+N+GCPQM+AKRGHYG +LQD+
Sbjct: 66 YSEVCEEDRPLITQFCANDPEVFVQAALLAQDYCDAVDLNLGCPQMIAKRGHYGVFLQDE 125
Query: 216 WPLLTELGKMA 226
W LL + ++A
Sbjct: 126 WDLLERMIRLA 136
Score = 66.2 bits (160), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 32/38 (84%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ +CD +D+N+GCPQM+AKRGHYG +LQD+W LL ++
Sbjct: 96 QDYCDAVDLNLGCPQMIAKRGHYGVFLQDEWDLLERMI 133
>gi|195035293|ref|XP_001989112.1| GH10224 [Drosophila grimshawi]
gi|193905112|gb|EDW03979.1| GH10224 [Drosophila grimshawi]
Length = 503
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 46/58 (79%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCGND + + EAA A+ +CD +DIN+GCPQ +AKRGHYGA+LQD+W LLT +V +
Sbjct: 85 IQFCGNDPQQILEAALAAQNYCDAVDINLGCPQAIAKRGHYGAFLQDEWELLTQIVRT 142
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 35/41 (85%)
Query: 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ + +CD +DIN+GCPQ +AKRGHYGA+LQD+W LLT++V
Sbjct: 100 LAAQNYCDAVDINLGCPQAIAKRGHYGAFLQDEWELLTQIV 140
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 34/40 (85%)
Query: 67 FIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
A+ +CD +DIN+GCPQ +AKRGHYGA+LQD+W LLT++
Sbjct: 100 LAAQNYCDAVDINLGCPQAIAKRGHYGAFLQDEWELLTQI 139
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 35/42 (83%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224
+ A+ +CD DIN+GCPQ +AKRGHYGA+LQD+W LLT++ +
Sbjct: 100 LAAQNYCDAVDINLGCPQAIAKRGHYGAFLQDEWELLTQIVR 141
>gi|410901739|ref|XP_003964353.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like [Takifugu rubripes]
Length = 494
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 53/87 (60%), Gaps = 15/87 (17%)
Query: 92 YGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQ 151
Y ++D PL+T+ FC ND + +AA LA+ +CD ID+N+GCPQ
Sbjct: 66 YNEVCEEDRPLITQ---------------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQ 110
Query: 152 MVAKRGHYGAYLQDDWPLLTNLVYSPN 178
M+AKRGHYGA+LQD+W LL +V N
Sbjct: 111 MIAKRGHYGAFLQDEWELLEKMVRLAN 137
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 6/73 (8%)
Query: 34 YGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYG 93
Y ++D PL+T+ + + + +F+ +A+ +CD ID+N+GCPQM+AKRGHYG
Sbjct: 66 YNEVCEEDRPLITQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYG 119
Query: 94 AYLQDDWPLLTEL 106
A+LQD+W LL ++
Sbjct: 120 AFLQDEWELLEKM 132
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 48/71 (67%), Gaps = 3/71 (4%)
Query: 159 YGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD 215
Y ++D PL+T + V ++A+ +CD D+N+GCPQM+AKRGHYGA+LQD+
Sbjct: 66 YNEVCEEDRPLITQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDE 125
Query: 216 WPLLTELGKMA 226
W LL ++ ++A
Sbjct: 126 WELLEKMVRLA 136
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 33/36 (91%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++V
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQDEWELLEKMV 133
>gi|426200879|gb|EKV50802.1| hypothetical protein AGABI2DRAFT_181833 [Agaricus bisporus var.
bisporus H97]
Length = 446
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L +AK+ EPHCD IDIN+GCPQ +AK+G YGAYLQDDW L+ L+ N
Sbjct: 89 VQFCANDPDQLLASAKIIEPHCDAIDINLGCPQDIAKKGKYGAYLQDDWDLIYKLI---N 145
Query: 179 MVHFVIAEP 187
++H ++ P
Sbjct: 146 ILHTNLSIP 154
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 48 LVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
LVV F N P + I EPHCD IDIN+GCPQ +AK+G YGAYLQDDW L+ +L
Sbjct: 87 LVVQFC---ANDPDQLLASAKIIEPHCDAIDINLGCPQDIAKKGKYGAYLQDDWDLIYKL 143
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/38 (71%), Positives = 33/38 (86%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
EPHCD IDIN+GCPQ +AK+G YGAYLQDDW L+ +L+
Sbjct: 107 EPHCDAIDINLGCPQDIAKKGKYGAYLQDDWDLIYKLI 144
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 61/122 (50%), Gaps = 13/122 (10%)
Query: 104 TELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 163
+EL ++ S G +++ + N A + H I+ N C G G L
Sbjct: 32 SELAWRKLSRRYGAQVVY--SPMINAKMFATQSNKHYREINFNTVC-------GEEGD-L 81
Query: 164 QDDWPLLTNL-VYSPN--MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLT 220
D PL+ P+ + I EPHCD DIN+GCPQ +AK+G YGAYLQDDW L+
Sbjct: 82 TVDRPLVVQFCANDPDQLLASAKIIEPHCDAIDINLGCPQDIAKKGKYGAYLQDDWDLIY 141
Query: 221 EL 222
+L
Sbjct: 142 KL 143
>gi|194765699|ref|XP_001964964.1| GF22896 [Drosophila ananassae]
gi|190617574|gb|EDV33098.1| GF22896 [Drosophila ananassae]
Length = 148
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 47/62 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FCGND++ + +AA A+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT + P
Sbjct: 87 IQFCGNDAQQILDAALAAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIGKHPE 146
Query: 179 MV 180
V
Sbjct: 147 RV 148
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELG 107
LV+ F + + A+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLTE+G
Sbjct: 85 LVIQF--CGNDAQQILDAALAAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIG 142
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 36/42 (85%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224
+ A+ HCD DIN+GCPQ +AKRGHYG++LQD+W LLTE+GK
Sbjct: 102 LAAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIGK 143
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 35/43 (81%)
Query: 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVH 51
+ + HCD +DIN+GCPQ +AKRGHYG++LQD+W LLTE+ H
Sbjct: 102 LAAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEIGKH 144
>gi|321476981|gb|EFX87940.1| hypothetical protein DAPPUDRAFT_305459 [Daphnia pulex]
Length = 484
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 69/124 (55%), Gaps = 18/124 (14%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
FC ND+ +AAK+AE HCD ID+N+GCPQ +AK+GHYGA+LQD+W L++ +V ++
Sbjct: 79 FCANDTDIFLKAAKMAEQHCDAIDLNLGCPQSIAKKGHYGAFLQDEWDLISKMV---KLI 135
Query: 181 HFVIAEP-HCDGN---DIN--IGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGILDN 234
H ++ P C DIN I +M+ + G Y LT G+ G L
Sbjct: 136 HRELSIPITCKVRVFPDINKSIAYAKMLEESGCYA---------LTVHGRTREQKGPLTG 186
Query: 235 TGSW 238
SW
Sbjct: 187 LASW 190
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 47/67 (70%), Gaps = 6/67 (8%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
+D PL+ + + + + +F+ +AE HCD ID+N+GCPQ +AK+GHYGA+LQD+
Sbjct: 71 EDRPLIAQ------FCANDTDIFLKAAKMAEQHCDAIDLNLGCPQSIAKKGHYGAFLQDE 124
Query: 100 WPLLTEL 106
W L++++
Sbjct: 125 WDLISKM 131
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 34/38 (89%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E HCD ID+N+GCPQ +AK+GHYGA+LQD+W L++++V
Sbjct: 95 EQHCDAIDLNLGCPQSIAKKGHYGAFLQDEWDLISKMV 132
>gi|357610726|gb|EHJ67117.1| hypothetical protein KGM_22527 [Danaus plexippus]
Length = 448
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 74/149 (49%), Gaps = 10/149 (6%)
Query: 91 HYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCP 150
H +++D P + F T + + FCGN+ + + AAKL E CD IDIN+GCP
Sbjct: 27 HSTVFIKD--PKYRKENFTTCTEDRPLFVQFCGNNPETMAAAAKLVESDCDAIDINLGCP 84
Query: 151 QMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGA 210
Q +AKRG YG++LQ++W LL ++V + M V C + + + K Y
Sbjct: 85 QSIAKRGRYGSFLQEEWQLLRDIVST--MSKTVSVPITC-----KVRVFESIEKSVQYAL 137
Query: 211 YLQDD-WPLLTELGKMAMLVGILDNTGSW 238
LQ+ LLT G+ G L SW
Sbjct: 138 MLQEAGCKLLTVHGRTREQKGPLTGIASW 166
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 37 YLQDDWPLLTELVVHFSWVSKNGPLFMGPLF-IAEPHCDGIDINIGCPQMVAKRGHYGAY 95
Y ++++ TE F N P M + E CD IDIN+GCPQ +AKRG YG++
Sbjct: 37 YRKENFTTCTEDRPLFVQFCGNNPETMAAAAKLVESDCDAIDINLGCPQSIAKRGRYGSF 96
Query: 96 LQDDWPLLTEL 106
LQ++W LL ++
Sbjct: 97 LQEEWQLLRDI 107
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
E CD IDIN+GCPQ +AKRG YG++LQ++W LL ++V S
Sbjct: 70 VESDCDAIDINLGCPQSIAKRGRYGSFLQEEWQLLRDIVSTMS 112
>gi|212531921|ref|XP_002146117.1| dihydrouridine synthase family protein, putative [Talaromyces
marneffei ATCC 18224]
gi|210071481|gb|EEA25570.1| dihydrouridine synthase family protein, putative [Talaromyces
marneffei ATCC 18224]
Length = 526
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 45/56 (80%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND + EAA+LA P+CD +D+N+GCPQ +A++GHYGA+LQ+DW L+ NL+
Sbjct: 108 VQFCANDPDDFLEAARLAAPYCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYNLI 163
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 12/129 (9%)
Query: 62 FMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHM-CGHSLM 120
F+ +A P+CD +D+N+GCPQ +A++GHYGA+LQ+DW L+ L K + + +
Sbjct: 118 FLEAARLAAPYCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYNLINKLHTELPIPVTAK 177
Query: 121 FCGNDSKNLT-EAAKLAEPHCDGIDINIGCPQMVAKRGH--------YGAYLQDDWPLLT 171
F ++K T E AK+ G I + ++GH Y YL+D+ P T
Sbjct: 178 FRIQETKEKTLEYAKMI--LSAGASIITVHGRRREQKGHNTGVADWSYVRYLRDNLPPET 235
Query: 172 NLVYSPNMV 180
+ + N++
Sbjct: 236 VIFANGNIL 244
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 32/37 (86%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +A++GHYGA+LQ+DW L+ L+
Sbjct: 127 PYCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYNLI 163
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 32/39 (82%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+A P+CD D+N+GCPQ +A++GHYGA+LQ+DW L+ L
Sbjct: 124 LAAPYCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYNL 162
>gi|194765697|ref|XP_001964963.1| GF22885 [Drosophila ananassae]
gi|190617573|gb|EDV33097.1| GF22885 [Drosophila ananassae]
Length = 513
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 45/55 (81%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 173
+ FCGND++ + +AA A+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLT +
Sbjct: 87 IQFCGNDAQQILDAALAAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEI 141
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
LV+ F + + A+ HCD +DIN+GCPQ +AKRGHYG++LQD+W LLTE+
Sbjct: 85 LVIQF--CGNDAQQILDAALAAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEI 141
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 34/40 (85%)
Query: 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 48
+ + HCD +DIN+GCPQ +AKRGHYG++LQD+W LLTE+
Sbjct: 102 LAAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEI 141
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 34/40 (85%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ A+ HCD DIN+GCPQ +AKRGHYG++LQD+W LLTE+
Sbjct: 102 LAAQDHCDAVDINLGCPQAIAKRGHYGSFLQDEWELLTEI 141
>gi|348517925|ref|XP_003446483.1| PREDICTED: tRNA-dihydrouridine synthase 1 [Oreochromis niloticus]
Length = 490
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 71/152 (46%), Gaps = 31/152 (20%)
Query: 92 YGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQ 151
Y ++D PL+T+ FC ND + +AA LA+ +CD ID+N+GCPQ
Sbjct: 66 YSEVCEEDRPLITQ---------------FCANDPEVFLQAALLAQDYCDAIDLNLGCPQ 110
Query: 152 MVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCP----QMVAKRGH 207
M+AKRGHYG +LQD+W LL +V N + + I C + V K
Sbjct: 111 MIAKRGHYGVFLQDEWDLLEKMVSLAN-----------EKLKVPITCKIRVFKEVEKTVR 159
Query: 208 YGAYLQDD-WPLLTELGKMAMLVGILDNTGSW 238
Y L+ LLT G+ G + SW
Sbjct: 160 YAQMLEKAGCQLLTVHGRTKDQKGAMTGIASW 191
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 49/73 (67%), Gaps = 6/73 (8%)
Query: 34 YGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYG 93
Y ++D PL+T+ + + + +F+ +A+ +CD ID+N+GCPQM+AKRGHYG
Sbjct: 66 YSEVCEEDRPLITQ------FCANDPEVFLQAALLAQDYCDAIDLNLGCPQMIAKRGHYG 119
Query: 94 AYLQDDWPLLTEL 106
+LQD+W LL ++
Sbjct: 120 VFLQDEWDLLEKM 132
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 32/36 (88%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+CD ID+N+GCPQM+AKRGHYG +LQD+W LL ++V
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGVFLQDEWDLLEKMV 133
>gi|301754165|ref|XP_002912927.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Ailuropoda
melanoleuca]
Length = 475
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 67/126 (53%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTVKYAQMLEKAG---------CQLLTVHGRTKEQKGPL 185
Query: 233 DNTGSW 238
T SW
Sbjct: 186 SGTASW 191
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
K Y +D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKR
Sbjct: 62 KENLYCEVCPEDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKR 115
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYGA+LQ++W LL +
Sbjct: 116 GHYGAFLQEEWDLLQRM 132
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL 134
>gi|301615796|ref|XP_002937362.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Xenopus (Silurana)
tropicalis]
Length = 486
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL +V
Sbjct: 91 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLEKMV---Q 147
Query: 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD-WPLLTELGKMAMLVGILDNTGS 237
+ H ++ P I + K Y L+ LLT G+ G L S
Sbjct: 148 LAHQKLSVP----VTCKIRVFPEIEKTVEYAKMLEKAGCQLLTVHGRTKEQKGPLTGIAS 203
Query: 238 W 238
W
Sbjct: 204 W 204
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
K Y +D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKR
Sbjct: 75 KENLYCEVCSEDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKR 128
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYGA+LQD+W LL ++
Sbjct: 129 GHYGAFLQDEWDLLEKM 145
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 155 KRGHYGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAY 211
K Y +D PL+ + V ++A+ +CD D+N+GCPQM+AKRGHYGA+
Sbjct: 75 KENLYCEVCSEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAF 134
Query: 212 LQDDWPLLTELGKMA 226
LQD+W LL ++ ++A
Sbjct: 135 LQDEWDLLEKMVQLA 149
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/36 (69%), Positives = 33/36 (91%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++V
Sbjct: 111 YCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLEKMV 146
>gi|395826764|ref|XP_003786585.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like [Otolemur garnettii]
Length = 476
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ HCD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDHCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQRGPL 185
Query: 233 DNTGSW 238
SW
Sbjct: 186 SGAASW 191
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + + +F+ +A+ HCD ID+N+GCPQM+AKRGHYGA+LQ++W LL +
Sbjct: 76 LIVQF--CANDPEVFVQAALLAQDHCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRM 132
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
HCD ID+N+GCPQM+AKRGHYGA+LQ++W LL +++
Sbjct: 98 HCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL 134
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 155 KRGHYGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAY 211
K Y +D PL+ + V ++A+ HCD D+N+GCPQM+AKRGHYGA+
Sbjct: 62 KENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDHCDAIDLNLGCPQMIAKRGHYGAF 121
Query: 212 LQDDWPLLTELGKMA 226
LQ++W LL + +A
Sbjct: 122 LQEEWDLLQRMILLA 136
>gi|73964669|ref|XP_848227.1| PREDICTED: tRNA-dihydrouridine synthase 1-like isoform 2 [Canis
lupus familiaris]
Length = 475
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 67/126 (53%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTVKYAQMLEKAG---------CQLLTVHGRTKEQKGPL 185
Query: 233 DNTGSW 238
T SW
Sbjct: 186 SGTASW 191
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
K Y +D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKR
Sbjct: 62 KENLYCEVCPEDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKR 115
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYGA+LQ++W LL +
Sbjct: 116 GHYGAFLQEEWDLLQRM 132
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL 134
>gi|147906386|ref|NP_001086550.1| dihydrouridine synthase 1-like [Xenopus laevis]
gi|49903669|gb|AAH76792.1| MGC83715 protein [Xenopus laevis]
Length = 464
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 67/126 (53%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 72 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLEKMI---Q 128
Query: 179 MVHFVIAEPHCDGNDINIGC-----PQMVAKRGHYGAYLQDD-WPLLTELGKMAMLVGIL 232
+ H ++ P + C P+M K Y L+ LLT G+ G L
Sbjct: 129 LAHQKLSVP--------VTCKIRVFPEM-EKTVQYAKMLEKAGCQLLTVHGRTKEQKGSL 179
Query: 233 DNTGSW 238
SW
Sbjct: 180 TGIASW 185
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
K Y +D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKR
Sbjct: 56 KENLYCERCSEDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKR 109
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYGA+LQD+W LL ++
Sbjct: 110 GHYGAFLQDEWDLLEKM 126
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 155 KRGHYGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAY 211
K Y +D PL+ + V ++A+ +CD D+N+GCPQM+AKRGHYGA+
Sbjct: 56 KENLYCERCSEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAF 115
Query: 212 LQDDWPLLTELGKMA 226
LQD+W LL ++ ++A
Sbjct: 116 LQDEWDLLEKMIQLA 130
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 33/36 (91%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+CD ID+N+GCPQM+AKRGHYGA+LQD+W LL +++
Sbjct: 92 YCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLEKMI 127
>gi|194216507|ref|XP_001490768.2| PREDICTED: tRNA-dihydrouridine synthase 1-like [Equus caballus]
Length = 475
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 67/126 (53%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPL 185
Query: 233 DNTGSW 238
T SW
Sbjct: 186 SGTASW 191
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
K Y +D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKR
Sbjct: 62 KENLYCEVCPEDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKR 115
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYGA+LQ++W LL +
Sbjct: 116 GHYGAFLQEEWDLLQRM 132
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL 134
>gi|281348632|gb|EFB24216.1| hypothetical protein PANDA_000684 [Ailuropoda melanoleuca]
Length = 478
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 67/126 (53%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTVKYAQMLEKAG---------CQLLTVHGRTKEQKGPL 185
Query: 233 DNTGSW 238
T SW
Sbjct: 186 SGTASW 191
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + + +F+ +A+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +
Sbjct: 76 LIVQF--CANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRM 132
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL 134
>gi|426238321|ref|XP_004013103.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Ovis aries]
Length = 475
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 67/126 (53%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 LAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPL 185
Query: 233 DNTGSW 238
T SW
Sbjct: 186 SGTASW 191
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + + +F+ +A+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +
Sbjct: 76 LIVQF--CANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRM 132
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL 134
>gi|169845921|ref|XP_001829678.1| tRNA-dihydrouridine synthase 1 [Coprinopsis cinerea okayama7#130]
gi|116509234|gb|EAU92129.1| tRNA-dihydrouridine synthase 1 [Coprinopsis cinerea okayama7#130]
Length = 561
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 50/69 (72%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L ++AK+ E +CD +DIN+GCPQ +AKRG YG++LQDDWPL+ +++ N
Sbjct: 102 VQFCANDPDQLLQSAKVVEKYCDAVDINLGCPQDIAKRGRYGSFLQDDWPLIYSMI---N 158
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 159 TLHVNLSIP 167
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 31/36 (86%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 103
+ E +CD +DIN+GCPQ +AKRG YG++LQDDWPL+
Sbjct: 118 VVEKYCDAVDINLGCPQDIAKRGRYGSFLQDDWPLI 153
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 32/38 (84%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E +CD +DIN+GCPQ +AKRG YG++LQDDWPL+ ++
Sbjct: 120 EKYCDAVDINLGCPQDIAKRGRYGSFLQDDWPLIYSMI 157
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 30/36 (83%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLL 219
+ E +CD DIN+GCPQ +AKRG YG++LQDDWPL+
Sbjct: 118 VVEKYCDAVDINLGCPQDIAKRGRYGSFLQDDWPLI 153
>gi|355569040|gb|EHH25321.1| hypothetical protein EGK_09121 [Macaca mulatta]
Length = 473
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPL 185
Query: 233 DNTGSW 238
SW
Sbjct: 186 SGAASW 191
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
K Y +D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKR
Sbjct: 62 KENLYCEVCPEDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKR 115
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYGA+LQD+W LL +
Sbjct: 116 GHYGAFLQDEWDLLQRM 132
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQD+W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL 134
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 155 KRGHYGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAY 211
K Y +D PL+ + V ++A+ +CD D+N+GCPQM+AKRGHYGA+
Sbjct: 62 KENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAF 121
Query: 212 LQDDWPLLTEL 222
LQD+W LL +
Sbjct: 122 LQDEWDLLQRM 132
>gi|40807366|ref|NP_071439.3| tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Homo sapiens]
gi|74749069|sp|Q6P1R4.1|DUS1L_HUMAN RecName: Full=tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like;
AltName: Full=tRNA-dihydrouridine synthase 1-like
gi|38511481|gb|AAH62566.1| DUS1L protein [Homo sapiens]
gi|40787788|gb|AAH64918.1| Dihydrouridine synthase 1-like (S. cerevisiae) [Homo sapiens]
gi|313883632|gb|ADR83302.1| dihydrouridine synthase 1-like (S. cerevisiae) [synthetic
construct]
Length = 473
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPL 185
Query: 233 DNTGSW 238
SW
Sbjct: 186 SGAASW 191
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
K Y +D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKR
Sbjct: 62 KENLYCEVCPEDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKR 115
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYGA+LQD+W LL +
Sbjct: 116 GHYGAFLQDEWDLLQRM 132
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQD+W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL 134
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 155 KRGHYGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAY 211
K Y +D PL+ + V ++A+ +CD D+N+GCPQM+AKRGHYGA+
Sbjct: 62 KENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAF 121
Query: 212 LQDDWPLLTEL 222
LQD+W LL +
Sbjct: 122 LQDEWDLLQRM 132
>gi|402901418|ref|XP_003913647.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Papio anubis]
gi|355754478|gb|EHH58443.1| hypothetical protein EGM_08297 [Macaca fascicularis]
gi|380815520|gb|AFE79634.1| tRNA-dihydrouridine synthase 1-like [Macaca mulatta]
gi|383413827|gb|AFH30127.1| tRNA-dihydrouridine synthase 1-like [Macaca mulatta]
Length = 473
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPL 185
Query: 233 DNTGSW 238
SW
Sbjct: 186 SGAASW 191
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
K Y +D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKR
Sbjct: 62 KENLYCEVCPEDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKR 115
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYGA+LQD+W LL +
Sbjct: 116 GHYGAFLQDEWDLLQRM 132
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQD+W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL 134
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 155 KRGHYGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAY 211
K Y +D PL+ + V ++A+ +CD D+N+GCPQM+AKRGHYGA+
Sbjct: 62 KENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAF 121
Query: 212 LQDDWPLLTEL 222
LQD+W LL +
Sbjct: 122 LQDEWDLLQRM 132
>gi|114671086|ref|XP_001167386.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
isoform 2 [Pan troglodytes]
gi|397522142|ref|XP_003831137.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Pan paniscus]
gi|410211114|gb|JAA02776.1| dihydrouridine synthase 1-like [Pan troglodytes]
gi|410248012|gb|JAA11973.1| dihydrouridine synthase 1-like [Pan troglodytes]
gi|410299382|gb|JAA28291.1| dihydrouridine synthase 1-like [Pan troglodytes]
gi|410349231|gb|JAA41219.1| dihydrouridine synthase 1-like [Pan troglodytes]
Length = 473
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPL 185
Query: 233 DNTGSW 238
SW
Sbjct: 186 SGAASW 191
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
K Y +D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKR
Sbjct: 62 KENLYCEVCPEDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKR 115
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYGA+LQD+W LL +
Sbjct: 116 GHYGAFLQDEWDLLQRM 132
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQD+W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL 134
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 155 KRGHYGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAY 211
K Y +D PL+ + V ++A+ +CD D+N+GCPQM+AKRGHYGA+
Sbjct: 62 KENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAF 121
Query: 212 LQDDWPLLTEL 222
LQD+W LL +
Sbjct: 122 LQDEWDLLQRM 132
>gi|403280349|ref|XP_003931682.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Saimiri boliviensis boliviensis]
Length = 473
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLRRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPL 185
Query: 233 DNTGSW 238
SW
Sbjct: 186 SGAASW 191
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + + +F+ +A+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL +
Sbjct: 76 LIVQF--CANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLRRM 132
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQD+W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLRRMIL 134
>gi|440897673|gb|ELR49313.1| tRNA-dihydrouridine synthase 1-like protein [Bos grunniens mutus]
Length = 475
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 67/126 (53%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPL 185
Query: 233 DNTGSW 238
T SW
Sbjct: 186 SGTASW 191
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + + +F+ +A+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +
Sbjct: 76 LIVQF--CANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRM 132
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL 134
>gi|412991352|emb|CCO16197.1| predicted protein [Bathycoccus prasinos]
Length = 473
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 42/55 (76%)
Query: 120 MFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
FC ND L +AA++ +P CDG+DIN GCPQ +AKRG+YGA+L DDWPL+ L+
Sbjct: 158 QFCANDPTTLLKAARVIQPFCDGVDINFGCPQRIAKRGNYGAFLMDDWPLVEKLI 212
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 33/38 (86%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+P CDG+DIN GCPQ +AKRG+YGA+L DDWPL+ +L+
Sbjct: 175 QPFCDGVDINFGCPQRIAKRGNYGAFLMDDWPLVEKLI 212
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ +P CDG+DIN GCPQ +AKRG+YGA+L DDWPL+ +L
Sbjct: 173 VIQPFCDGVDINFGCPQRIAKRGNYGAFLMDDWPLVEKL 211
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 33/41 (80%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224
+ +P CDG DIN GCPQ +AKRG+YGA+L DDWPL+ +L K
Sbjct: 173 VIQPFCDGVDINFGCPQRIAKRGNYGAFLMDDWPLVEKLIK 213
>gi|426346359|ref|XP_004040847.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Gorilla gorilla gorilla]
Length = 473
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPL 185
Query: 233 DNTGSW 238
SW
Sbjct: 186 SGAASW 191
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
K Y +D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKR
Sbjct: 62 KENLYCEVCPEDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKR 115
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYGA+LQD+W LL +
Sbjct: 116 GHYGAFLQDEWDLLQRM 132
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQD+W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL 134
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 155 KRGHYGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAY 211
K Y +D PL+ + V ++A+ +CD D+N+GCPQM+AKRGHYGA+
Sbjct: 62 KENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAF 121
Query: 212 LQDDWPLLTEL 222
LQD+W LL +
Sbjct: 122 LQDEWDLLQRM 132
>gi|45946028|gb|AAH17081.4| DUS1L protein [Homo sapiens]
Length = 406
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 11 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL--- 67
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 68 LAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPL 118
Query: 233 DNTGSW 238
SW
Sbjct: 119 SGAASW 124
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + + +F+ +A+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL +
Sbjct: 9 LIVQF--CANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRM 65
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQD+W LL +++
Sbjct: 31 YCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL 67
>gi|410982040|ref|XP_003997371.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like [Felis catus]
Length = 452
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD +D+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAVDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTVKYAQMLEKAG---------CQLLTVHGRTKEQKGPL 185
Query: 233 DNTGSW 238
T SW
Sbjct: 186 SGTASW 191
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + + +F+ +A+ +CD +D+N+GCPQM+AKRGHYGA+LQ++W LL +
Sbjct: 76 LIVQF--CANDPEVFVQAALLAQDYCDAVDLNLGCPQMIAKRGHYGAFLQEEWDLLQRM 132
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD +D+N+GCPQM+AKRGHYGA+LQ++W LL +++
Sbjct: 98 YCDAVDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL 134
>gi|296476150|tpg|DAA18265.1| TPA: PP3111 protein [Bos taurus]
Length = 266
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 67/126 (53%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPL 185
Query: 233 DNTGSW 238
T SW
Sbjct: 186 SGTASW 191
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%), Gaps = 6/67 (8%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
+D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKRGHYGA+LQ++
Sbjct: 72 EDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEE 125
Query: 100 WPLLTEL 106
W LL +
Sbjct: 126 WDLLQRM 132
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL 134
>gi|118151248|ref|NP_001071552.1| tRNA-dihydrouridine synthase 1-like [Bos taurus]
gi|117306348|gb|AAI26847.1| Dihydrouridine synthase 1-like (S. cerevisiae) [Bos taurus]
Length = 270
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 67/126 (53%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPL 185
Query: 233 DNTGSW 238
T SW
Sbjct: 186 SGTASW 191
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%), Gaps = 6/67 (8%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
+D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKRGHYGA+LQ++
Sbjct: 72 EDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEE 125
Query: 100 WPLLTEL 106
W LL +
Sbjct: 126 WDLLQRM 132
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL 134
>gi|114650483|ref|XP_001146302.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Pan troglodytes]
Length = 473
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL--- 134
Query: 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD-WPLLTELGKMAMLVGILDNTGS 237
+ H ++ P I + K Y L+ LLT G+ G L S
Sbjct: 135 LAHEKLSVP----VTCKIRVFPEIDKTMRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAAS 190
Query: 238 W 238
W
Sbjct: 191 W 191
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
K Y +D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKR
Sbjct: 62 KENLYCEVCPEDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKR 115
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYGA+LQD+W LL +
Sbjct: 116 GHYGAFLQDEWDLLQRM 132
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQD+W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL 134
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 155 KRGHYGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAY 211
K Y +D PL+ + V ++A+ +CD D+N+GCPQM+AKRGHYGA+
Sbjct: 62 KENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAF 121
Query: 212 LQDDWPLLTEL 222
LQD+W LL +
Sbjct: 122 LQDEWDLLQRM 132
>gi|393213071|gb|EJC98568.1| Dus-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 448
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 72/142 (50%), Gaps = 26/142 (18%)
Query: 64 GPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYL----QDDWPLLTE---LGFKTRSHMCG 116
P F+ P D ++ P + R HYGA L + +L+E +K ++
Sbjct: 28 SPKFVVAPMVDQSEL----PWRILSR-HYGAQLVYTPMINARMLSEDKHKSYKEQAFNLS 82
Query: 117 HS-----------LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 165
H + F ND L +AAKL E HCD +DIN GCPQ +A+RGHYG+YLQD
Sbjct: 83 HGEEGSTFDRPLIVQFAANDPDQLLKAAKLVESHCDAVDINFGCPQDIARRGHYGSYLQD 142
Query: 166 DWPLLTNLVYSPNMVHFVIAEP 187
DW L+ L+ N +H ++ P
Sbjct: 143 DWDLVYRLI---NTLHENLSIP 161
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/38 (65%), Positives = 31/38 (81%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E HCD +DIN GCPQ +A+RGHYG+YLQDDW L+ L+
Sbjct: 114 ESHCDAVDINFGCPQDIARRGHYGSYLQDDWDLVYRLI 151
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 30/39 (76%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E HCD DIN GCPQ +A+RGHYG+YLQDDW L+ L
Sbjct: 112 LVESHCDAVDINFGCPQDIARRGHYGSYLQDDWDLVYRL 150
>gi|41054535|ref|NP_955911.1| tRNA-dihydrouridine synthase 1-like [Danio rerio]
gi|37589069|gb|AAH58873.1| Dihydrouridine synthase 1-like (S. cerevisiae) [Danio rerio]
Length = 479
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 52/87 (59%), Gaps = 15/87 (17%)
Query: 92 YGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQ 151
Y Q+D PL+T+ FC ND + +AA LA+ +CD ID+N+GCPQ
Sbjct: 66 YSEVNQEDRPLITQ---------------FCANDPEVFIQAALLAQDYCDAIDLNLGCPQ 110
Query: 152 MVAKRGHYGAYLQDDWPLLTNLVYSPN 178
M+AKRGHYG +LQD+W LL ++ N
Sbjct: 111 MIAKRGHYGVFLQDEWDLLEKMIKLAN 137
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 6/73 (8%)
Query: 34 YGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYG 93
Y Q+D PL+T+ + + + +F+ +A+ +CD ID+N+GCPQM+AKRGHYG
Sbjct: 66 YSEVNQEDRPLITQ------FCANDPEVFIQAALLAQDYCDAIDLNLGCPQMIAKRGHYG 119
Query: 94 AYLQDDWPLLTEL 106
+LQD+W LL ++
Sbjct: 120 VFLQDEWDLLEKM 132
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 159 YGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD 215
Y Q+D PL+T + V ++A+ +CD D+N+GCPQM+AKRGHYG +LQD+
Sbjct: 66 YSEVNQEDRPLITQFCANDPEVFIQAALLAQDYCDAIDLNLGCPQMIAKRGHYGVFLQDE 125
Query: 216 WPLLTELGKMA 226
W LL ++ K+A
Sbjct: 126 WDLLEKMIKLA 136
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 32/36 (88%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+CD ID+N+GCPQM+AKRGHYG +LQD+W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGVFLQDEWDLLEKMI 133
>gi|297702084|ref|XP_002828014.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
isoform 3 [Pongo abelii]
Length = 473
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD +D+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAVDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPL 185
Query: 233 DNTGSW 238
SW
Sbjct: 186 SGAASW 191
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
K Y +D PL+ + + + + +F+ +A+ +CD +D+N+GCPQM+AKR
Sbjct: 62 KENLYCEVCPEDRPLIVQ------FCANDPEVFVQAALLAQDYCDAVDLNLGCPQMIAKR 115
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYGA+LQD+W LL +
Sbjct: 116 GHYGAFLQDEWDLLQRM 132
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 155 KRGHYGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAY 211
K Y +D PL+ + V ++A+ +CD D+N+GCPQM+AKRGHYGA+
Sbjct: 62 KENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAVDLNLGCPQMIAKRGHYGAF 121
Query: 212 LQDDWPLLTEL 222
LQD+W LL +
Sbjct: 122 LQDEWDLLQRM 132
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD +D+N+GCPQM+AKRGHYGA+LQD+W LL +++
Sbjct: 98 YCDAVDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL 134
>gi|119610149|gb|EAW89743.1| dihydrouridine synthase 1-like (S. cerevisiae), isoform CRA_a [Homo
sapiens]
Length = 415
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQ---------LLTVHGRTKEQKGPL 185
Query: 233 DNTGSW 238
SW
Sbjct: 186 SGAASW 191
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
K Y +D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKR
Sbjct: 62 KENLYCEVCPEDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKR 115
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYGA+LQD+W LL +
Sbjct: 116 GHYGAFLQDEWDLLQRM 132
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQD+W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL 134
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 155 KRGHYGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAY 211
K Y +D PL+ + V ++A+ +CD D+N+GCPQM+AKRGHYGA+
Sbjct: 62 KENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAF 121
Query: 212 LQDDWPLLTEL 222
LQD+W LL +
Sbjct: 122 LQDEWDLLQRM 132
>gi|392584699|gb|EIW74043.1| Dus-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 480
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FCGND + L +AAK+ E HCD IDIN+GCPQ +AKRG YG++L +DW L+ LV N
Sbjct: 98 VQFCGNDPETLLQAAKVVEDHCDAIDINLGCPQDIAKRGKYGSFLMEDWDLIYKLV---N 154
Query: 179 MVHFVIAEP 187
++H + P
Sbjct: 155 ILHVNLKIP 163
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 31/39 (79%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E HCD IDIN+GCPQ +AKRG YG++L +DW L+ +LV
Sbjct: 115 VEDHCDAIDINLGCPQDIAKRGKYGSFLMEDWDLIYKLV 153
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 31/39 (79%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ E HCD IDIN+GCPQ +AKRG YG++L +DW L+ +L
Sbjct: 114 VVEDHCDAIDINLGCPQDIAKRGKYGSFLMEDWDLIYKL 152
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E HCD DIN+GCPQ +AKRG YG++L +DW L+ +L
Sbjct: 114 VVEDHCDAIDINLGCPQDIAKRGKYGSFLMEDWDLIYKL 152
>gi|354469073|ref|XP_003496955.1| PREDICTED: tRNA-dihydrouridine synthase 1 [Cricetulus griseus]
Length = 475
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 8/121 (6%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL--- 134
Query: 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD-WPLLTELGKMAMLVGILDNTGS 237
+ H ++ P I + K Y L+ LLT G+ G + T S
Sbjct: 135 LAHERLSVP----VTCKIRVFPEIEKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTAS 190
Query: 238 W 238
W
Sbjct: 191 W 191
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
K Y +D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKR
Sbjct: 62 KENLYCEVCPEDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKR 115
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYGA+LQ++W LL +
Sbjct: 116 GHYGAFLQEEWDLLQRM 132
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL 134
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 155 KRGHYGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAY 211
K Y +D PL+ + V ++A+ +CD D+N+GCPQM+AKRGHYGA+
Sbjct: 62 KENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAF 121
Query: 212 LQDDWPLLTEL 222
LQ++W LL +
Sbjct: 122 LQEEWDLLQRM 132
>gi|431908634|gb|ELK12226.1| tRNA-dihydrouridine synthase 1-like protein [Pteropus alecto]
Length = 465
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 44/56 (78%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND + +AA LA+ HCD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDHCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
K Y +D PL+ + + + + +F+ +A+ HCD ID+N+GCPQM+AKR
Sbjct: 62 KENLYCEVCPEDRPLIVQ------FCANDPEVFVQAALLAQDHCDAIDLNLGCPQMIAKR 115
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYGA+LQ++W LL +
Sbjct: 116 GHYGAFLQEEWDLLQRM 132
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
HCD ID+N+GCPQM+AKRGHYGA+LQ++W LL +++
Sbjct: 98 HCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL 134
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 155 KRGHYGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAY 211
K Y +D PL+ + V ++A+ HCD D+N+GCPQM+AKRGHYGA+
Sbjct: 62 KENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDHCDAIDLNLGCPQMIAKRGHYGAF 121
Query: 212 LQDDWPLLTEL 222
LQ++W LL +
Sbjct: 122 LQEEWDLLQRM 132
>gi|327265085|ref|XP_003217339.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Anolis
carolinensis]
Length = 485
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 65/125 (52%), Gaps = 16/125 (12%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD +D+N+GCPQM+AKRGHYGA+LQ++W LL ++ N
Sbjct: 78 VQFCANDPEIFVQAALLAQDYCDAVDLNLGCPQMIAKRGHYGAFLQEEWDLLRRMIMLAN 137
Query: 179 MVHFVIAEPHCDGNDINIGCPQMV----AKRGHYGAYLQDD-WPLLTELGKMAMLVGILD 233
+ + I C V AK Y L++ LLT G+ G L
Sbjct: 138 -----------EKLSVPITCKIRVFPEIAKTVKYAQLLEEAGCQLLTVHGRTKEQKGPLA 186
Query: 234 NTGSW 238
SW
Sbjct: 187 GVASW 191
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + + +F+ +A+ +CD +D+N+GCPQM+AKRGHYGA+LQ++W LL +
Sbjct: 76 LIVQF--CANDPEIFVQAALLAQDYCDAVDLNLGCPQMIAKRGHYGAFLQEEWDLLRRM 132
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 34/40 (85%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+ +CD +D+N+GCPQM+AKRGHYGA+LQ++W LL +++
Sbjct: 95 AQDYCDAVDLNLGCPQMIAKRGHYGAFLQEEWDLLRRMIM 134
>gi|47216250|emb|CAG05946.1| unnamed protein product [Tetraodon nigroviridis]
Length = 505
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 51/82 (62%), Gaps = 15/82 (18%)
Query: 92 YGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQ 151
Y ++D PL+T+ FC ND + +AA LA+ +CD ID+N+GCPQ
Sbjct: 43 YNEVCEEDRPLITQ---------------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQ 87
Query: 152 MVAKRGHYGAYLQDDWPLLTNL 173
M+AKRGHYGA+LQD+W LL +
Sbjct: 88 MIAKRGHYGAFLQDEWGLLEKM 109
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 159 YGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD 215
Y ++D PL+T + V ++A+ +CD D+N+GCPQM+AKRGHYGA+LQD+
Sbjct: 43 YNEVCEEDRPLITQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDE 102
Query: 216 WPLLTELGKMAMLVGILDNTGS 237
W LL ++GK+ + G NT S
Sbjct: 103 WGLLEKMGKLDFMSGFWKNTHS 124
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 51/74 (68%), Gaps = 6/74 (8%)
Query: 34 YGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYG 93
Y ++D PL+T+ + + + +F+ +A+ +CD ID+N+GCPQM+AKRGHYG
Sbjct: 43 YNEVCEEDRPLITQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYG 96
Query: 94 AYLQDDWPLLTELG 107
A+LQD+W LL ++G
Sbjct: 97 AFLQDEWGLLEKMG 110
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 48
+CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 75 YCDAIDLNLGCPQMIAKRGHYGAFLQDEWGLLEKM 109
>gi|47937507|gb|AAH72076.1| MGC78973 protein [Xenopus laevis]
Length = 465
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYG++LQD+W LL ++
Sbjct: 72 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGSFLQDEWDLLEKMI---Q 128
Query: 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD-WPLLTELGKMAMLVGILDNTGS 237
+ H ++ P I + K Y L+ LLT G+ G L S
Sbjct: 129 LAHQKLSVP----VTCKIRVFPEIEKTVEYAKMLEKAGCQLLTVHGRTKEQKGPLTGIAS 184
Query: 238 W 238
W
Sbjct: 185 W 185
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
K Y +D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKR
Sbjct: 56 KENLYCEVCPEDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKR 109
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYG++LQD+W LL ++
Sbjct: 110 GHYGSFLQDEWDLLEKM 126
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 155 KRGHYGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAY 211
K Y +D PL+ + V ++A+ +CD D+N+GCPQM+AKRGHYG++
Sbjct: 56 KENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGSF 115
Query: 212 LQDDWPLLTELGKMA 226
LQD+W LL ++ ++A
Sbjct: 116 LQDEWDLLEKMIQLA 130
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 33/36 (91%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+CD ID+N+GCPQM+AKRGHYG++LQD+W LL +++
Sbjct: 92 YCDAIDLNLGCPQMIAKRGHYGSFLQDEWDLLEKMI 127
>gi|31980834|ref|NP_081100.2| tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Mus musculus]
gi|81898593|sp|Q8C2P3.1|DUS1L_MOUSE RecName: Full=tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like;
AltName: Full=tRNA-dihydrouridine synthase 1-like
gi|26353202|dbj|BAC40231.1| unnamed protein product [Mus musculus]
gi|148702860|gb|EDL34807.1| dihydrouridine synthase 1-like (S. cerevisiae), isoform CRA_b [Mus
musculus]
Length = 475
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G +
Sbjct: 135 LAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPM 185
Query: 233 DNTGSW 238
T SW
Sbjct: 186 AGTASW 191
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + + +F+ +A+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +
Sbjct: 76 LIVQF--CANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRM 132
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL 134
>gi|148223341|ref|NP_001085224.1| uncharacterized protein LOC432319 [Xenopus laevis]
gi|80477797|gb|AAI08778.1| MGC78973 protein [Xenopus laevis]
Length = 465
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYG++LQD+W LL ++
Sbjct: 72 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGSFLQDEWDLLEKMI---Q 128
Query: 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD-WPLLTELGKMAMLVGILDNTGS 237
+ H ++ P I + K Y L+ LLT G+ G L S
Sbjct: 129 LAHQKLSVP----VTCKIRVFPEIEKTVEYAKMLEKAGCQLLTVHGRTKEQKGPLTGIAS 184
Query: 238 W 238
W
Sbjct: 185 W 185
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 49/77 (63%), Gaps = 6/77 (7%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
K Y +D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKR
Sbjct: 56 KENLYCEVCPEDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKR 109
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYG++LQD+W LL ++
Sbjct: 110 GHYGSFLQDEWDLLEKM 126
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 155 KRGHYGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAY 211
K Y +D PL+ + V ++A+ +CD D+N+GCPQM+AKRGHYG++
Sbjct: 56 KENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGSF 115
Query: 212 LQDDWPLLTELGKMA 226
LQD+W LL ++ ++A
Sbjct: 116 LQDEWDLLEKMIQLA 130
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 33/36 (91%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+CD ID+N+GCPQM+AKRGHYG++LQD+W LL +++
Sbjct: 92 YCDAIDLNLGCPQMIAKRGHYGSFLQDEWDLLEKMI 127
>gi|348558134|ref|XP_003464873.1| PREDICTED: tRNA-dihydrouridine synthase 1 [Cavia porcellus]
Length = 468
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI---Q 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPL 185
Query: 233 DNTGSW 238
SW
Sbjct: 186 SGAASW 191
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + + +F+ +A+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +
Sbjct: 76 LIVQF--CANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRM 132
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 32/36 (88%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
>gi|167516252|ref|XP_001742467.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779091|gb|EDQ92705.1| predicted protein [Monosiga brevicollis MX1]
Length = 291
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 44/58 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCG+D+ L EAAK EP+CD I +N GCPQ +A+RGHYGA+LQD+W LL +V +
Sbjct: 69 VQFCGDDAATLLEAAKHVEPYCDAISLNCGCPQGIARRGHYGAFLQDEWELLAEIVST 126
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 37/48 (77%), Gaps = 3/48 (6%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKN 58
EP+CD I +N GCPQ +A+RGHYGA+LQD+W LL E+V S +SKN
Sbjct: 86 VEPYCDAISLNCGCPQGIARRGHYGAFLQDEWELLAEIV---STLSKN 130
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 31/37 (83%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
EP+CD I +N GCPQ +A+RGHYGA+LQD+W LL E+
Sbjct: 87 EPYCDAISLNCGCPQGIARRGHYGAFLQDEWELLAEI 123
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 30/37 (81%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
EP+CD +N GCPQ +A+RGHYGA+LQD+W LL E+
Sbjct: 87 EPYCDAISLNCGCPQGIARRGHYGAFLQDEWELLAEI 123
>gi|409084063|gb|EKM84420.1| hypothetical protein AGABI1DRAFT_67813 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 436
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L +AK+ E HCD IDIN+GCPQ +AK+G YGAYLQDDW L+ L+ N
Sbjct: 89 VQFCANDPDQLLASAKIIELHCDAIDINLGCPQDIAKKGKYGAYLQDDWDLIYKLI---N 145
Query: 179 MVHFVIAEP 187
++H ++ P
Sbjct: 146 ILHTNLSIP 154
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 48 LVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
LVV F N P + I E HCD IDIN+GCPQ +AK+G YGAYLQDDW L+ +L
Sbjct: 87 LVVQFC---ANDPDQLLASAKIIELHCDAIDINLGCPQDIAKKGKYGAYLQDDWDLIYKL 143
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 32/38 (84%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E HCD IDIN+GCPQ +AK+G YGAYLQDDW L+ +L+
Sbjct: 107 ELHCDAIDINLGCPQDIAKKGKYGAYLQDDWDLIYKLI 144
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/39 (66%), Positives = 31/39 (79%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
I E HCD DIN+GCPQ +AK+G YGAYLQDDW L+ +L
Sbjct: 105 IIELHCDAIDINLGCPQDIAKKGKYGAYLQDDWDLIYKL 143
>gi|328767911|gb|EGF77959.1| hypothetical protein BATDEDRAFT_13578 [Batrachochytrium
dendrobatidis JAM81]
Length = 296
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 65/121 (53%), Gaps = 8/121 (6%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + L AAKL E CD ID+N+GCPQ +AK+GHYG++LQD+W L+ ++V +
Sbjct: 80 VQFCANDPETLLSAAKLVEAQCDAIDLNLGCPQGIAKKGHYGSFLQDEWDLIASMVKA-- 137
Query: 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD-WPLLTELGKMAMLVGILDNTGS 237
VH I+ P I V K Y LQ+ LLT G++ G L
Sbjct: 138 -VHEHISVP----ITCKIRIFPDVKKTIEYALMLQNAGCQLLTVHGRLREQKGQLTGLAD 192
Query: 238 W 238
W
Sbjct: 193 W 193
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 31/39 (79%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD ID+N+GCPQ +AK+GHYG++LQD+W L+ +V
Sbjct: 97 VEAQCDAIDLNLGCPQGIAKKGHYGSFLQDEWDLIASMV 135
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELG 107
L+V F + + + + E CD ID+N+GCPQ +AK+GHYG++LQD+W L+ +
Sbjct: 78 LIVQF--CANDPETLLSAAKLVEAQCDAIDLNLGCPQGIAKKGHYGSFLQDEWDLIASMV 135
Query: 108 FKTRSHM 114
H+
Sbjct: 136 KAVHEHI 142
>gi|109119167|ref|XP_001113015.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Macaca mulatta]
Length = 476
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 44/56 (78%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMI 133
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
K Y +D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKR
Sbjct: 62 KENLYCEVCPEDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKR 115
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYGA+LQD+W LL +
Sbjct: 116 GHYGAFLQDEWDLLQRM 132
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQD+W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL 134
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 155 KRGHYGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAY 211
K Y +D PL+ + V ++A+ +CD D+N+GCPQM+AKRGHYGA+
Sbjct: 62 KENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAF 121
Query: 212 LQDDWPLLTELGKMA 226
LQD+W LL + +A
Sbjct: 122 LQDEWDLLQRMILLA 136
>gi|156364501|ref|XP_001626386.1| predicted protein [Nematostella vectensis]
gi|156213260|gb|EDO34286.1| predicted protein [Nematostella vectensis]
Length = 288
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 42/56 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND + +AA L E CDG+D+N+GCPQ +AKRGHYGA+LQD+W LL +V
Sbjct: 85 VQFCANDPEVFVQAALLVESECDGVDLNLGCPQHIAKRGHYGAFLQDEWELLEKMV 140
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + + +F+ + E CDG+D+N+GCPQ +AKRGHYGA+LQD+W LL ++
Sbjct: 83 LIVQF--CANDPEVFVQAALLVESECDGVDLNLGCPQHIAKRGHYGAFLQDEWELLEKM 139
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMA 226
++ E CDG D+N+GCPQ +AKRGHYGA+LQD+W LL ++ K+A
Sbjct: 100 LLVESECDGVDLNLGCPQHIAKRGHYGAFLQDEWELLEKMVKLA 143
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CDG+D+N+GCPQ +AKRGHYGA+LQD+W LL ++V
Sbjct: 102 VESECDGVDLNLGCPQHIAKRGHYGAFLQDEWELLEKMV 140
>gi|118099689|ref|XP_001232803.1| PREDICTED: tRNA-dihydrouridine synthase 1-like isoform 1 [Gallus
gallus]
Length = 473
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 15/87 (17%)
Query: 92 YGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQ 151
YG +D PL+ + FC ND + +AA LA+ +CD ID+N+GCPQ
Sbjct: 66 YGEACPEDRPLIVQ---------------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQ 110
Query: 152 MVAKRGHYGAYLQDDWPLLTNLVYSPN 178
M+AKRGHYGA+LQ++W LL ++ N
Sbjct: 111 MIAKRGHYGAFLQEEWDLLQRMILLAN 137
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 6/73 (8%)
Query: 34 YGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYG 93
YG +D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKRGHYG
Sbjct: 66 YGEACPEDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYG 119
Query: 94 AYLQDDWPLLTEL 106
A+LQ++W LL +
Sbjct: 120 AFLQEEWDLLQRM 132
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 159 YGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD 215
YG +D PL+ + V ++A+ +CD D+N+GCPQM+AKRGHYGA+LQ++
Sbjct: 66 YGEACPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEE 125
Query: 216 WPLLTEL 222
W LL +
Sbjct: 126 WDLLQRM 132
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL 134
>gi|351706438|gb|EHB09357.1| tRNA-dihydrouridine synthase 1-like protein [Heterocephalus glaber]
Length = 481
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI---Q 134
Query: 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD-WPLLTELGKMAMLVGILDNTGS 237
+ H ++ P I + K Y L+ L+T G+ G L S
Sbjct: 135 LAHEKLSVP----VTCKIRVFSEIDKTVRYAQMLEKAGCQLVTVHGRTKEQKGPLSGAAS 190
Query: 238 W 238
W
Sbjct: 191 W 191
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + + +F+ +A+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +
Sbjct: 76 LIVQF--CANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRM 132
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 32/36 (88%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
>gi|388851412|emb|CCF54997.1| related to tRNA dihydrouridine synthase [Ustilago hordei]
Length = 529
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L AA++ E CD +D+N+GCPQ +A+RGHYG+YL +DWPL+ +L+ N
Sbjct: 144 VQFCANDPSTLLRAAQVVEDRCDAVDLNLGCPQHIARRGHYGSYLMEDWPLIFSLI---N 200
Query: 179 MVHFVIAEP 187
++H + P
Sbjct: 201 ILHINLKVP 209
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 31/39 (79%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +A+RGHYG+YL +DWPL+ L+
Sbjct: 161 VEDRCDAVDLNLGCPQHIARRGHYGSYLMEDWPLIFSLI 199
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 31/39 (79%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ E CD +D+N+GCPQ +A+RGHYG+YL +DWPL+ L
Sbjct: 160 VVEDRCDAVDLNLGCPQHIARRGHYGSYLMEDWPLIFSL 198
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E CD D+N+GCPQ +A+RGHYG+YL +DWPL+ L
Sbjct: 160 VVEDRCDAVDLNLGCPQHIARRGHYGSYLMEDWPLIFSL 198
>gi|303278204|ref|XP_003058395.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459555|gb|EEH56850.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 440
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 40/56 (71%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L AAKL PHCDG+DIN GCPQ +AK+G YGA+L DDW + +L+
Sbjct: 108 VQFCANDPATLLAAAKLVAPHCDGVDINFGCPQRIAKKGRYGAFLMDDWKTVHDLI 163
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 30/37 (81%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
PHCDG+DIN GCPQ +AK+G YGA+L DDW + +L+
Sbjct: 127 PHCDGVDINFGCPQRIAKKGRYGAFLMDDWKTVHDLI 163
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 41 DWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 100
D PLL + + + + + + PHCDG+DIN GCPQ +AK+G YGA+L DDW
Sbjct: 103 DRPLLVQ------FCANDPATLLAAAKLVAPHCDGVDINFGCPQRIAKKGRYGAFLMDDW 156
Query: 101 PLLTEL 106
+ +L
Sbjct: 157 KTVHDL 162
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 166 DWPLLTNLVYSPNMVHFVIAE---PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
D PLL + A+ PHCDG DIN GCPQ +AK+G YGA+L DDW + +
Sbjct: 103 DRPLLVQFCANDPATLLAAAKLVAPHCDGVDINFGCPQRIAKKGRYGAFLMDDWKTVHD- 161
Query: 223 GKMAMLVGILDNTGS 237
L+ ILD S
Sbjct: 162 -----LISILDKELS 171
>gi|224074477|ref|XP_002197358.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Taeniopygia guttata]
Length = 486
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 15/87 (17%)
Query: 92 YGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQ 151
YG +D PL+ + FC ND + +AA LA+ +CD ID+N+GCPQ
Sbjct: 66 YGEACPEDRPLIVQ---------------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQ 110
Query: 152 MVAKRGHYGAYLQDDWPLLTNLVYSPN 178
M+AKRGHYGA+LQ++W LL ++ N
Sbjct: 111 MIAKRGHYGAFLQEEWDLLQRMILLAN 137
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%), Gaps = 6/73 (8%)
Query: 34 YGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYG 93
YG +D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKRGHYG
Sbjct: 66 YGEACPEDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYG 119
Query: 94 AYLQDDWPLLTEL 106
A+LQ++W LL +
Sbjct: 120 AFLQEEWDLLQRM 132
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 159 YGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD 215
YG +D PL+ + V ++A+ +CD D+N+GCPQM+AKRGHYGA+LQ++
Sbjct: 66 YGEACPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEE 125
Query: 216 WPLLTEL 222
W LL +
Sbjct: 126 WDLLQRM 132
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL 134
>gi|395335120|gb|EJF67496.1| Dus-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 423
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 45/58 (77%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC N+ L +AKL EP+CD +DIN+GCPQ +A+RGHYG++LQD+W L+ L+++
Sbjct: 93 VQFCANNPSQLLTSAKLLEPYCDAVDINLGCPQDIARRGHYGSFLQDEWDLVHKLIHT 150
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + N + + EP+CD +DIN+GCPQ +A+RGHYG++LQD+W L+ +L
Sbjct: 91 LIVQF--CANNPSQLLTSAKLLEPYCDAVDINLGCPQDIARRGHYGSFLQDEWDLVHKL 147
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 34/38 (89%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
EP+CD +DIN+GCPQ +A+RGHYG++LQD+W L+ +L+
Sbjct: 111 EPYCDAVDINLGCPQDIARRGHYGSFLQDEWDLVHKLI 148
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 165 DDWPLLTNLVY---SPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTE 221
+D PL+ S + + EP+CD DIN+GCPQ +A+RGHYG++LQD+W L+ +
Sbjct: 87 EDRPLIVQFCANNPSQLLTSAKLLEPYCDAVDINLGCPQDIARRGHYGSFLQDEWDLVHK 146
Query: 222 L 222
L
Sbjct: 147 L 147
>gi|393246893|gb|EJD54401.1| Dus-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 485
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 70/136 (51%), Gaps = 27/136 (19%)
Query: 64 GPLFIAEPHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSL--- 119
P F+ P D ++ P +++A+R YGA L P++ F T+++ L
Sbjct: 23 SPKFVVAPMVDQSEL----PWRILARR--YGAELAYT-PMINAKMFATQTNKAYRELNFN 75
Query: 120 ----------------MFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 163
FC ND L E+AK P+CD +D+N+GCPQ +AKRG YGA+L
Sbjct: 76 TEHGEEGGPEDRPLIVQFCANDPDQLLESAKALAPYCDAVDLNLGCPQDIAKRGRYGAFL 135
Query: 164 QDDWPLLTNLVYSPNM 179
QDDW L+ L+ + +M
Sbjct: 136 QDDWDLIYKLINALHM 151
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 32/37 (86%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +AKRG YGA+LQDDW L+ +L+
Sbjct: 110 PYCDAVDLNLGCPQDIAKRGRYGAFLQDDWDLIYKLI 146
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 30/36 (83%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +AKRG YGA+LQDDW L+ +L
Sbjct: 110 PYCDAVDLNLGCPQDIAKRGRYGAFLQDDWDLIYKL 145
>gi|198428499|ref|XP_002130384.1| PREDICTED: similar to dihydrouridine synthase 1-like [Ciona
intestinalis]
Length = 626
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 45/58 (77%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC N ++N EA+KL E C+G+D+N+GCPQ +AKRGH+GAYLQ+DW L+ ++ +
Sbjct: 76 VQFCSNSAENFLEASKLVEGLCEGVDLNLGCPQHIAKRGHFGAYLQEDWDLIIEIIST 133
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELG 107
L+V F S + F+ + E C+G+D+N+GCPQ +AKRGH+GAYLQ+DW L+ E+
Sbjct: 74 LIVQF--CSNSAENFLEASKLVEGLCEGVDLNLGCPQHIAKRGHFGAYLQEDWDLIIEII 131
Query: 108 FKTRSHM---CGHSLMFCGNDSKNLTEAAKLAEPHCDGIDI 145
T+ H+ + K + A L CD I +
Sbjct: 132 STTKQHIGIGVTAKIRVFNEIDKTVKYAQMLETAGCDIITV 172
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 32/35 (91%)
Query: 15 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
C+G+D+N+GCPQ +AKRGH+GAYLQ+DW L+ E++
Sbjct: 97 CEGVDLNLGCPQHIAKRGHFGAYLQEDWDLIIEII 131
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 32/39 (82%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E C+G D+N+GCPQ +AKRGH+GAYLQ+DW L+ E+
Sbjct: 92 LVEGLCEGVDLNLGCPQHIAKRGHFGAYLQEDWDLIIEI 130
>gi|432119116|gb|ELK38336.1| tRNA-dihydrouridine synthase 1-like protein [Myotis davidii]
Length = 468
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 65/126 (51%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI---Q 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 RAHEQLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPL 185
Query: 233 DNTGSW 238
SW
Sbjct: 186 SGAASW 191
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
K Y +D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKR
Sbjct: 62 KENLYCEVCPEDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKR 115
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYGA+LQ++W LL +
Sbjct: 116 GHYGAFLQEEWDLLQRM 132
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 155 KRGHYGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAY 211
K Y +D PL+ + V ++A+ +CD D+N+GCPQM+AKRGHYGA+
Sbjct: 62 KENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAF 121
Query: 212 LQDDWPLLTELGKMA 226
LQ++W LL + + A
Sbjct: 122 LQEEWDLLQRMIQRA 136
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 32/36 (88%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
>gi|326930780|ref|XP_003211519.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine synthase
1-like, partial [Meleagris gallopavo]
Length = 487
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 44/59 (74%)
Query: 120 MFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++ N
Sbjct: 83 QFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMILLAN 141
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 50/74 (67%), Gaps = 6/74 (8%)
Query: 39 QDDWPLLTELVVHFSWVS-----KNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHY 92
++++ LL LV S +S N P +F+ +A+ +CD ID+N+GCPQM+AKRGHY
Sbjct: 63 KNNYCLLILLVXFCSSLSPSQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHY 122
Query: 93 GAYLQDDWPLLTEL 106
GA+LQ++W LL +
Sbjct: 123 GAFLQEEWDLLQRM 136
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 34/40 (85%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +++
Sbjct: 99 AQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL 138
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 34/40 (85%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
++A+ +CD D+N+GCPQM+AKRGHYGA+LQ++W LL +
Sbjct: 97 LLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRM 136
>gi|339252522|ref|XP_003371484.1| dihydrouridine synthase (Dus) superfamily [Trichinella spiralis]
gi|316968258|gb|EFV52559.1| dihydrouridine synthase (Dus) superfamily [Trichinella spiralis]
Length = 355
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 51/90 (56%), Gaps = 10/90 (11%)
Query: 91 HYGAYLQDDWPLLTELGFKTRSHMCGHS----LMFCGNDSKNLTEAAKLAEPHCDGIDIN 146
H G +L D EL KT C FC N+ + L AA L CD IDIN
Sbjct: 3 HAGNFLTD------ELYRKTHFTTCPEDRPLIAQFCANEPETLFNAASLVANQCDAIDIN 56
Query: 147 IGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+GCPQ +A+RG YGAYLQDDW L+++L+ S
Sbjct: 57 LGCPQTIARRGKYGAYLQDDWDLVSSLIKS 86
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 15/85 (17%)
Query: 33 HYGAYLQDDWPLLTELVVHFSWVSKNGPLFMG-------PLFIAEP----HCDGIDINIG 81
H G +L D+ T HF+ ++ PL LF A CD IDIN+G
Sbjct: 3 HAGNFLTDELYRKT----HFTTCPEDRPLIAQFCANEPETLFNAASLVANQCDAIDINLG 58
Query: 82 CPQMVAKRGHYGAYLQDDWPLLTEL 106
CPQ +A+RG YGAYLQDDW L++ L
Sbjct: 59 CPQTIARRGKYGAYLQDDWDLVSSL 83
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 158 HYGAYLQDDWPLLTNLVYSPN----MVHFVIAEP------------HCDGNDINIGCPQM 201
H G +L D+ T+ P + F EP CD DIN+GCPQ
Sbjct: 3 HAGNFLTDELYRKTHFTTCPEDRPLIAQFCANEPETLFNAASLVANQCDAIDINLGCPQT 62
Query: 202 VAKRGHYGAYLQDDWPLLTELGKMA 226
+A+RG YGAYLQDDW L++ L K A
Sbjct: 63 IARRGKYGAYLQDDWDLVSSLIKSA 87
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 30/36 (83%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
CD IDIN+GCPQ +A+RG YGAYLQDDW L++ L+
Sbjct: 49 QCDAIDINLGCPQTIARRGKYGAYLQDDWDLVSSLI 84
>gi|242774281|ref|XP_002478411.1| dihydrouridine synthase family protein, putative [Talaromyces
stipitatus ATCC 10500]
gi|218722030|gb|EED21448.1| dihydrouridine synthase family protein, putative [Talaromyces
stipitatus ATCC 10500]
Length = 524
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + EAA+L P+CD +D+N+GCPQ +A++GHYGA+LQ+DW L+ L+ N
Sbjct: 105 VQFCANDPNDFLEAARLVAPYCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYKLI---N 161
Query: 179 MVHFVIAEP 187
+H + P
Sbjct: 162 RLHTELPVP 170
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 35/45 (77%)
Query: 62 FMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
F+ + P+CD +D+N+GCPQ +A++GHYGA+LQ+DW L+ +L
Sbjct: 115 FLEAARLVAPYCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYKL 159
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 33/37 (89%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +A++GHYGA+LQ+DW L+ +L+
Sbjct: 124 PYCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYKLI 160
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 32/39 (82%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ P+CD D+N+GCPQ +A++GHYGA+LQ+DW L+ +L
Sbjct: 121 LVAPYCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYKL 159
>gi|255079532|ref|XP_002503346.1| tRNA-dihydrouridine synthase [Micromonas sp. RCC299]
gi|226518612|gb|ACO64604.1| tRNA-dihydrouridine synthase [Micromonas sp. RCC299]
Length = 353
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 40/56 (71%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L +AA + PHCDG+DIN GCPQ +AKRG YGA+L DDW + NL+
Sbjct: 94 VQFCANDPDMLLKAASIVAPHCDGVDINFGCPQRIAKRGRYGAFLMDDWETVHNLI 149
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 40 DDWPLLTELVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
+D PLL + N P + + I PHCDG+DIN GCPQ +AKRG YGA+L D
Sbjct: 88 NDRPLLVQFCA-------NDPDMLLKAASIVAPHCDGVDINFGCPQRIAKRGRYGAFLMD 140
Query: 99 DWPLLTELGFKTRSHMC 115
DW + L K H+
Sbjct: 141 DWETVHNLINKLDKHLS 157
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 29/37 (78%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
PHCDG+DIN GCPQ +AKRG YGA+L DDW + L+
Sbjct: 113 PHCDGVDINFGCPQRIAKRGRYGAFLMDDWETVHNLI 149
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 165 DDWPLLTNL-VYSPNMV--HFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDW 216
+D PLL P+M+ I PHCDG DIN GCPQ +AKRG YGA+L DDW
Sbjct: 88 NDRPLLVQFCANDPDMLLKAASIVAPHCDGVDINFGCPQRIAKRGRYGAFLMDDW 142
>gi|344291226|ref|XP_003417337.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Loxodonta africana]
Length = 477
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPL 185
Query: 233 DNTGSW 238
SW
Sbjct: 186 PGPASW 191
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
K Y +D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKR
Sbjct: 62 KENLYCEVCPEDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKR 115
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYGA+LQ++W LL +
Sbjct: 116 GHYGAFLQEEWDLLQRM 132
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL 134
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 155 KRGHYGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAY 211
K Y +D PL+ + V ++A+ +CD D+N+GCPQM+AKRGHYGA+
Sbjct: 62 KENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAF 121
Query: 212 LQDDWPLLTELGKMA 226
LQ++W LL + +A
Sbjct: 122 LQEEWDLLQRMILLA 136
>gi|334323209|ref|XP_001379483.2| PREDICTED: tRNA-dihydrouridine synthase 1-like [Monodelphis
domestica]
Length = 481
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVKAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL--- 134
Query: 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD-WPLLTELGKMAMLVGILDNTGS 237
+ H ++ P I + K Y L+ LLT G+ G L S
Sbjct: 135 LAHEKLSVP----VTCKIRVFPEIDKTVKYAQLLEKAGCQLLTVHGRTKEQKGPLSGIAS 190
Query: 238 W 238
W
Sbjct: 191 W 191
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + + +F+ +A+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +
Sbjct: 76 LIVQF--CANDPEVFVKAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRM 132
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL 134
>gi|336371301|gb|EGN99640.1| hypothetical protein SERLA73DRAFT_134960 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384056|gb|EGO25204.1| hypothetical protein SERLADRAFT_386752 [Serpula lacrymans var.
lacrymans S7.9]
Length = 402
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 44/58 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC N L +AK+ E HCD +DIN+GCPQ +A++GHYG++LQD+W L+ NLV++
Sbjct: 99 VQFCANSPDQLLASAKVVEAHCDAVDINLGCPQDIARKGHYGSFLQDEWQLIYNLVHT 156
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 39 QDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
++ PL L+V F S + + + E HCD +DIN+GCPQ +A++GHYG++LQD
Sbjct: 88 EEGGPLDRPLIVQFCANSPDQ--LLASAKVVEAHCDAVDINLGCPQDIARKGHYGSFLQD 145
Query: 99 DWPLLTEL 106
+W L+ L
Sbjct: 146 EWQLIYNL 153
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 32/39 (82%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E HCD +DIN+GCPQ +A++GHYG++LQD+W L+ LV
Sbjct: 116 VEAHCDAVDINLGCPQDIARKGHYGSFLQDEWQLIYNLV 154
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 166 DWPLLTNL-VYSPN--MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
D PL+ SP+ + + E HCD DIN+GCPQ +A++GHYG++LQD+W L+ L
Sbjct: 94 DRPLIVQFCANSPDQLLASAKVVEAHCDAVDINLGCPQDIARKGHYGSFLQDEWQLIYNL 153
>gi|358335819|dbj|GAA54426.1| tRNA-dihydrouridine synthase 1 [Clonorchis sinensis]
Length = 1529
Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/56 (50%), Positives = 42/56 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC N + +AA+ +P+CD +DIN+GCPQ +AK GHYGA+LQD+W L+ ++V
Sbjct: 893 VQFCANSPETFVKAARTIQPYCDAVDINLGCPQKIAKHGHYGAFLQDEWNLIRSIV 948
Score = 66.6 bits (161), Expect = 8e-09, Method: Composition-based stats.
Identities = 23/38 (60%), Positives = 32/38 (84%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+P+CD +DIN+GCPQ +AK GHYGA+LQD+W L+ +V
Sbjct: 911 QPYCDAVDINLGCPQKIAKHGHYGAFLQDEWNLIRSIV 948
Score = 65.5 bits (158), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 48 LVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F N P F+ +P+CD +DIN+GCPQ +AK GHYGA+LQD+W L+ +
Sbjct: 891 LIVQFC---ANSPETFVKAARTIQPYCDAVDINLGCPQKIAKHGHYGAFLQDEWNLIRSI 947
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 7/63 (11%)
Query: 165 DDWPLLTNL-VYSPNMVHFVIA----EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLL 219
+D PL+ SP FV A +P+CD DIN+GCPQ +AK GHYGA+LQD+W L+
Sbjct: 887 EDRPLIVQFCANSPET--FVKAARTIQPYCDAVDINLGCPQKIAKHGHYGAFLQDEWNLI 944
Query: 220 TEL 222
+
Sbjct: 945 RSI 947
>gi|148702859|gb|EDL34806.1| dihydrouridine synthase 1-like (S. cerevisiae), isoform CRA_a [Mus
musculus]
Length = 228
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 44/56 (78%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 94 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 149
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + + +F+ +A+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +
Sbjct: 92 LIVQF--CANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRM 148
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 34/40 (85%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +++
Sbjct: 111 AQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL 150
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 155 KRGHYGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAY 211
K Y +D PL+ + V ++A+ +CD D+N+GCPQM+AKRGHYGA+
Sbjct: 78 KENLYCDVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAF 137
Query: 212 LQDDWPLLTELGKMA 226
LQ++W LL + +A
Sbjct: 138 LQEEWDLLQRMILLA 152
>gi|395533185|ref|XP_003768641.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Sarcophilus harrisii]
Length = 481
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVKAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQKMIL--- 134
Query: 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD-WPLLTELGKMAMLVGILDNTGS 237
+ H ++ P I + K Y L+ LLT G+ G L S
Sbjct: 135 LAHEKLSVP----VTCKIRVFPEIDKTVKYAQLLEKAGCQLLTVHGRTKEQKGPLSGIAS 190
Query: 238 W 238
W
Sbjct: 191 W 191
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 44/59 (74%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + + +F+ +A+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 76 LIVQF--CANDPEVFVKAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQKM 132
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 34/37 (91%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQKMIL 134
>gi|444727706|gb|ELW68184.1| tRNA-dihydrouridine synthase 1-like protein [Tupaia chinensis]
Length = 472
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD +D+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQGYCDAVDLNLGCPQMIAKRGHYGAFLQEEWDLLQRIIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPL 185
Query: 233 DNTGSW 238
SW
Sbjct: 186 AGAASW 191
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + + +F+ +A+ +CD +D+N+GCPQM+AKRGHYGA+LQ++W LL +
Sbjct: 76 LIVQF--CANDPEVFVQAALLAQGYCDAVDLNLGCPQMIAKRGHYGAFLQEEWDLLQRI 132
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD +D+N+GCPQM+AKRGHYGA+LQ++W LL +++
Sbjct: 98 YCDAVDLNLGCPQMIAKRGHYGAFLQEEWDLLQRIIL 134
>gi|342183086|emb|CCC92566.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 523
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 88 KRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLM--FCGNDSKNLTEAAKLAEPHCDGIDI 145
++ ++ L TE G + H L FCGND + + AA+L E C+ +D
Sbjct: 113 RQRYFTTTATTSQKLSTEAGASGEAQENDHPLFVQFCGNDPETVLAAARLVEDQCEAVDF 172
Query: 146 NIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
NIGCPQ +A+RGHYG++L +DW LL N++++
Sbjct: 173 NIGCPQGIARRGHYGSFLMEDWELLHNILHT 203
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 26 QMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQM 85
++ + G G ++D PL + + + + + E C+ +D NIGCPQ
Sbjct: 126 KLSTEAGASGEAQENDHPLFVQ------FCGNDPETVLAAARLVEDQCEAVDFNIGCPQG 179
Query: 86 VAKRGHYGAYLQDDWPLL 103
+A+RGHYG++L +DW LL
Sbjct: 180 IARRGHYGSFLMEDWELL 197
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 151 QMVAKRGHYGAYLQDDWPLLTNLV-YSPNMVHFV--IAEPHCDGNDINIGCPQMVAKRGH 207
++ + G G ++D PL P V + E C+ D NIGCPQ +A+RGH
Sbjct: 126 KLSTEAGASGEAQENDHPLFVQFCGNDPETVLAAARLVEDQCEAVDFNIGCPQGIARRGH 185
Query: 208 YGAYLQDDWPLL 219
YG++L +DW LL
Sbjct: 186 YGSFLMEDWELL 197
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 45
E C+ +D NIGCPQ +A+RGHYG++L +DW LL
Sbjct: 164 EDQCEAVDFNIGCPQGIARRGHYGSFLMEDWELL 197
>gi|343469577|emb|CCD17484.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 521
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 88 KRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLM--FCGNDSKNLTEAAKLAEPHCDGIDI 145
++ ++ L TE G + H L FCGND + + AA+L E C+ +D
Sbjct: 113 RQRYFTTTATTSQKLSTEAGASGEAQENDHPLFVQFCGNDPETVLAAARLVEDQCEAVDF 172
Query: 146 NIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
NIGCPQ +A+RGHYG++L +DW LL N++++
Sbjct: 173 NIGCPQGIARRGHYGSFLMEDWELLHNILHT 203
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 26 QMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQM 85
++ + G G ++D PL + + + + + E C+ +D NIGCPQ
Sbjct: 126 KLSTEAGASGEAQENDHPLFVQ------FCGNDPETVLAAARLVEDQCEAVDFNIGCPQG 179
Query: 86 VAKRGHYGAYLQDDWPLL 103
+A+RGHYG++L +DW LL
Sbjct: 180 IARRGHYGSFLMEDWELL 197
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 151 QMVAKRGHYGAYLQDDWPLLTNLV-YSPNMVHFV--IAEPHCDGNDINIGCPQMVAKRGH 207
++ + G G ++D PL P V + E C+ D NIGCPQ +A+RGH
Sbjct: 126 KLSTEAGASGEAQENDHPLFVQFCGNDPETVLAAARLVEDQCEAVDFNIGCPQGIARRGH 185
Query: 208 YGAYLQDDWPLL 219
YG++L +DW LL
Sbjct: 186 YGSFLMEDWELL 197
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 45
E C+ +D NIGCPQ +A+RGHYG++L +DW LL
Sbjct: 164 EDQCEAVDFNIGCPQGIARRGHYGSFLMEDWELL 197
>gi|71004722|ref|XP_757027.1| hypothetical protein UM00880.1 [Ustilago maydis 521]
gi|46096397|gb|EAK81630.1| hypothetical protein UM00880.1 [Ustilago maydis 521]
Length = 527
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + L +AAK+ E CD +D+N+GCPQ +A+RGHYG+YL +DW L+ +L+ N
Sbjct: 137 VQFCSNDPETLLKAAKVVEDRCDAVDLNLGCPQHIARRGHYGSYLMEDWSLIFSLI---N 193
Query: 179 MVHFVIAEP 187
++H + P
Sbjct: 194 ILHVNLKVP 202
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 35 GAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGA 94
G+ D PL + + S + + + E CD +D+N+GCPQ +A+RGHYG+
Sbjct: 126 GSSKDTDRPLFVQ------FCSNDPETLLKAAKVVEDRCDAVDLNLGCPQHIARRGHYGS 179
Query: 95 YLQDDWPLLTEL 106
YL +DW L+ L
Sbjct: 180 YLMEDWSLIFSL 191
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +A+RGHYG+YL +DW L+ L+
Sbjct: 154 VEDRCDAVDLNLGCPQHIARRGHYGSYLMEDWSLIFSLI 192
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E CD D+N+GCPQ +A+RGHYG+YL +DW L+ L
Sbjct: 153 VVEDRCDAVDLNLGCPQHIARRGHYGSYLMEDWSLIFSL 191
>gi|242210427|ref|XP_002471056.1| predicted protein [Postia placenta Mad-698-R]
gi|220729846|gb|EED83713.1| predicted protein [Postia placenta Mad-698-R]
Length = 513
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 50/69 (72%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC N + L ++AK+ EP+CD +D+N+GCPQ +A+RGHYG++LQD+W L+ L+ N
Sbjct: 97 VQFCANSPEQLLKSAKVVEPYCDAVDVNLGCPQDIARRGHYGSFLQDEWDLIYELI---N 153
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 154 TLHRNLSIP 162
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 34/39 (87%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
EP+CD +D+N+GCPQ +A+RGHYG++LQD+W L+ EL+
Sbjct: 114 VEPYCDAVDVNLGCPQDIARRGHYGSFLQDEWDLIYELI 152
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 34/39 (87%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ EP+CD +D+N+GCPQ +A+RGHYG++LQD+W L+ EL
Sbjct: 113 VVEPYCDAVDVNLGCPQDIARRGHYGSFLQDEWDLIYEL 151
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Query: 165 DDWPLLTNL-VYSPNMV--HFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTE 221
+D PL+ SP + + EP+CD D+N+GCPQ +A+RGHYG++LQD+W L+ E
Sbjct: 91 EDRPLIVQFCANSPEQLLKSAKVVEPYCDAVDVNLGCPQDIARRGHYGSFLQDEWDLIYE 150
Query: 222 L 222
L
Sbjct: 151 L 151
>gi|449016924|dbj|BAM80326.1| similar to tRNA dihydrouridine synthase Dus1p [Cyanidioschyzon
merolae strain 10D]
Length = 362
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 65/124 (52%), Gaps = 17/124 (13%)
Query: 64 GPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGF----KTR-SHMCGHS 118
P F+ P D ++ +++ +R YG L P+L L F K R H +
Sbjct: 27 SPRFLCAPMVDASELAF---RLLVRR--YGVQLAYT-PMLHSLNFLQSPKYRDEHFTTCA 80
Query: 119 L------MFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTN 172
L FCGND L AAKL E D +D+N+GCPQ +A+RG YGA+LQDDW L+
Sbjct: 81 LDRPVVAQFCGNDPTTLVAAAKLVESQVDAVDLNLGCPQNIARRGRYGAFLQDDWDLVQR 140
Query: 173 LVYS 176
LV +
Sbjct: 141 LVSA 144
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
E D +D+N+GCPQ +A+RG YGA+LQDDW L+ LV S
Sbjct: 104 VESQVDAVDLNLGCPQNIARRGRYGAFLQDDWDLVQRLVSALS 146
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSH 113
+ E D +D+N+GCPQ +A+RG YGA+LQDDW L+ L +H
Sbjct: 103 LVESQVDAVDLNLGCPQNIARRGRYGAFLQDDWDLVQRLVSALSTH 148
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 5/52 (9%)
Query: 171 TNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
T LV + +V E D D+N+GCPQ +A+RG YGA+LQDDW L+ L
Sbjct: 95 TTLVAAAKLV-----ESQVDAVDLNLGCPQNIARRGRYGAFLQDDWDLVQRL 141
>gi|358370777|dbj|GAA87387.1| tRNA-dihydrouridine synthase 1 [Aspergillus kawachii IFO 4308]
Length = 542
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + EAA+ P+CD +D+N+GCPQ +AKRGHYGA+LQ+DW L+ L+ N
Sbjct: 126 VQFCANDPDDFLEAARHVAPYCDAVDLNLGCPQGIAKRGHYGAFLQEDWDLIYKLI---N 182
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 183 RLHNELSIP 191
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 33/37 (89%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +AKRGHYGA+LQ+DW L+ +L+
Sbjct: 145 PYCDAVDLNLGCPQGIAKRGHYGAFLQEDWDLIYKLI 181
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 20/164 (12%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMC-GHSLMFCGNDSKNL 129
P+CD +D+N+GCPQ +AKRGHYGA+LQ+DW L+ +L + + + + F ++K
Sbjct: 145 PYCDAVDLNLGCPQGIAKRGHYGAFLQEDWDLIYKLINRLHNELSIPVTAKFRIQETKEK 204
Query: 130 T-EAAKLAEPHCDGIDINIGCPQMVAKRGH--------YGAYLQDDWPLLTNLVYSPNMV 180
T E AK+ G +I + ++GH Y YL+D+ P T + + N +
Sbjct: 205 TLEYAKMI--LSAGANIITVHGRRREQKGHNTGLADWSYIRYLRDNLPPETVIFANGNNL 262
Query: 181 HFV-----IAEPHCDG---NDINIGCPQMVAKRGHYGAYLQDDW 216
++ + E DG + N+ P + +K G+ ++ W
Sbjct: 263 NYEDLDRCLEETGADGVMSAEGNLSDPSIFSKPPPVGSEGREYW 306
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 31/36 (86%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +AKRGHYGA+LQ+DW L+ +L
Sbjct: 145 PYCDAVDLNLGCPQGIAKRGHYGAFLQEDWDLIYKL 180
>gi|317025631|ref|XP_001389487.2| dihydrouridine synthase family protein [Aspergillus niger CBS
513.88]
gi|350638512|gb|EHA26868.1| hypothetical protein ASPNIDRAFT_196147 [Aspergillus niger ATCC
1015]
Length = 542
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + EAA+ P+CD +D+N+GCPQ +AKRGHYGA+LQ+DW L+ L+ N
Sbjct: 126 VQFCANDPDDFLEAARHVAPYCDAVDLNLGCPQGIAKRGHYGAFLQEDWDLIYRLI---N 182
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 183 RLHNELSIP 191
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 32/37 (86%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +AKRGHYGA+LQ+DW L+ L+
Sbjct: 145 PYCDAVDLNLGCPQGIAKRGHYGAFLQEDWDLIYRLI 181
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 20/164 (12%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMC-GHSLMFCGNDSKNL 129
P+CD +D+N+GCPQ +AKRGHYGA+LQ+DW L+ L + + + + F ++K
Sbjct: 145 PYCDAVDLNLGCPQGIAKRGHYGAFLQEDWDLIYRLINRLHNELSIPVTAKFRIQETKEK 204
Query: 130 T-EAAKLAEPHCDGIDINIGCPQMVAKRGH--------YGAYLQDDWPLLTNLVYSPNMV 180
T E AK+ G +I + ++GH Y YL+D+ P T + + N +
Sbjct: 205 TLEYAKMI--LSAGANIITVHGRRREQKGHNTGLADWSYIRYLRDNLPPETVIFANGNNL 262
Query: 181 HFV-----IAEPHCDG---NDINIGCPQMVAKRGHYGAYLQDDW 216
++ + E DG + N+ P + +K G+ ++ W
Sbjct: 263 NYEDLDRCLEETGADGVMSAEGNLSDPSIFSKPPPVGSEGREYW 306
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 30/36 (83%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +AKRGHYGA+LQ+DW L+ L
Sbjct: 145 PYCDAVDLNLGCPQGIAKRGHYGAFLQEDWDLIYRL 180
>gi|134055604|emb|CAK37250.1| unnamed protein product [Aspergillus niger]
Length = 466
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + EAA+ P+CD +D+N+GCPQ +AKRGHYGA+LQ+DW L+ L+ N
Sbjct: 109 VQFCANDPDDFLEAARHVAPYCDAVDLNLGCPQGIAKRGHYGAFLQEDWDLIYRLI---N 165
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 166 RLHNELSIP 174
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 32/37 (86%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +AKRGHYGA+LQ+DW L+ L+
Sbjct: 128 PYCDAVDLNLGCPQGIAKRGHYGAFLQEDWDLIYRLI 164
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 12/122 (9%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMC-GHSLMFCGNDSKNL 129
P+CD +D+N+GCPQ +AKRGHYGA+LQ+DW L+ L + + + + F ++K
Sbjct: 128 PYCDAVDLNLGCPQGIAKRGHYGAFLQEDWDLIYRLINRLHNELSIPVTAKFRIQETKEK 187
Query: 130 T-EAAKLAEPHCDGIDINIGCPQMVAKRGH--------YGAYLQDDWPLLTNLVYSPNMV 180
T E AK+ G +I + ++GH Y YL+D+ P T + + N +
Sbjct: 188 TLEYAKMI--LSAGANIITVHGRRREQKGHNTGLADWSYIRYLRDNLPPETVIFANGNNL 245
Query: 181 HF 182
++
Sbjct: 246 NY 247
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 30/36 (83%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +AKRGHYGA+LQ+DW L+ L
Sbjct: 128 PYCDAVDLNLGCPQGIAKRGHYGAFLQEDWDLIYRL 163
>gi|149055089|gb|EDM06906.1| PP3111 protein, isoform CRA_b [Rattus norvegicus]
gi|149055090|gb|EDM06907.1| PP3111 protein, isoform CRA_b [Rattus norvegicus]
Length = 326
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRG YGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G +
Sbjct: 135 LAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPM 185
Query: 233 DNTGSW 238
T SW
Sbjct: 186 AGTASW 191
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 45/67 (67%), Gaps = 6/67 (8%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
+D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKRG YGA+LQ++
Sbjct: 72 EDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEE 125
Query: 100 WPLLTEL 106
W LL +
Sbjct: 126 WDLLQRM 132
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 33/40 (82%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+ +CD ID+N+GCPQM+AKRG YGA+LQ++W LL +++
Sbjct: 95 AQDYCDAIDLNLGCPQMIAKRGRYGAFLQEEWDLLQRMIL 134
>gi|363747962|ref|XP_003644199.1| hypothetical protein Ecym_1130 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887831|gb|AET37382.1| hypothetical protein Ecym_1130 [Eremothecium cymbalariae
DBVPG#7215]
Length = 433
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 43/56 (76%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND + L EAAKL + CD +D+N+GCPQ +AK+GHYGAYL D+W L++ L+
Sbjct: 89 VQFCANDPEYLLEAAKLVQDKCDAVDLNLGCPQGIAKKGHYGAYLMDEWNLISKLI 144
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 37 YLQDDWPLLTELVVHFSWVSKNGPLFM-GPLFIAEPHCDGIDINIGCPQMVAKRGHYGAY 95
+L D L L+V F N P ++ + + CD +D+N+GCPQ +AK+GHYGAY
Sbjct: 76 HLDGDEKLDRPLIVQFC---ANDPEYLLEAAKLVQDKCDAVDLNLGCPQGIAKKGHYGAY 132
Query: 96 LQDDWPLLTEL 106
L D+W L+++L
Sbjct: 133 LMDEWNLISKL 143
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 31/35 (88%)
Query: 15 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
CD +D+N+GCPQ +AK+GHYGAYL D+W L+++L+
Sbjct: 110 CDAVDLNLGCPQGIAKKGHYGAYLMDEWNLISKLI 144
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 31/39 (79%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ + CD D+N+GCPQ +AK+GHYGAYL D+W L+++L
Sbjct: 105 LVQDKCDAVDLNLGCPQGIAKKGHYGAYLMDEWNLISKL 143
>gi|25282413|ref|NP_742015.1| tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like [Rattus
norvegicus]
gi|81866863|sp|Q8K582.1|DUS1L_RAT RecName: Full=tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like;
AltName: Full=Liver regeneration-related protein
LRRG08/LRRG09; AltName: Full=tRNA-dihydrouridine
synthase 1-like
gi|21105480|gb|AAM34683.1|AF508021_1 embryo-related protein [Rattus norvegicus]
gi|33187773|gb|AAP97740.1| liver regeneration-related protein LRRG08 [Rattus norvegicus]
gi|33187775|gb|AAP97741.1| liver regeneration-related protein LRRG09 [Rattus norvegicus]
Length = 438
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRG YGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G +
Sbjct: 135 LAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPM 185
Query: 233 DNTGSW 238
T SW
Sbjct: 186 AGTASW 191
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 45/67 (67%), Gaps = 6/67 (8%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
+D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKRG YGA+LQ++
Sbjct: 72 EDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEE 125
Query: 100 WPLLTEL 106
W LL +
Sbjct: 126 WDLLQRM 132
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 33/40 (82%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+ +CD ID+N+GCPQM+AKRG YGA+LQ++W LL +++
Sbjct: 95 AQDYCDAIDLNLGCPQMIAKRGRYGAFLQEEWDLLQRMIL 134
>gi|357123723|ref|XP_003563557.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Brachypodium
distachyon]
Length = 424
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 43/56 (76%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L +AAK+ EPHCD +DIN GCPQ +A+RG+YGA+L D+ PL+ +LV
Sbjct: 148 VQFCANDPDILLQAAKIVEPHCDYVDINFGCPQRIARRGYYGAFLMDNLPLVKSLV 203
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
EPHCD +DIN GCPQ +A+RG+YGA+L D+ PL+ LV + S
Sbjct: 165 VEPHCDYVDINFGCPQRIARRGYYGAFLMDNLPLVKSLVQNLS 207
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 6/68 (8%)
Query: 39 QDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
++D PL + + + + + + I EPHCD +DIN GCPQ +A+RG+YGA+L D
Sbjct: 141 KEDRPLFVQ------FCANDPDILLQAAKIVEPHCDYVDINFGCPQRIARRGYYGAFLMD 194
Query: 99 DWPLLTEL 106
+ PL+ L
Sbjct: 195 NLPLVKSL 202
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 30/39 (76%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
I EPHCD DIN GCPQ +A+RG+YGA+L D+ PL+ L
Sbjct: 164 IVEPHCDYVDINFGCPQRIARRGYYGAFLMDNLPLVKSL 202
>gi|384251898|gb|EIE25375.1| FMN-linked oxidoreductase [Coccomyxa subellipsoidea C-169]
Length = 394
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 42/58 (72%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC ND + L AA++ EPH D ID+N+GCPQ +A+RG YGA+L DD PL+ +V +
Sbjct: 84 VQFCANDPETLLAAARIVEPHADAIDLNLGCPQRIARRGRYGAFLMDDLPLVERIVRT 141
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRG 90
R + + + D PL+ + + + + + I EPH D ID+N+GCPQ +A+RG
Sbjct: 69 RAEHFSTCEGDRPLMVQ------FCANDPETLLAAARIVEPHADAIDLNLGCPQRIARRG 122
Query: 91 HYGAYLQDDWPLLTEL 106
YGA+L DD PL+ +
Sbjct: 123 RYGAFLMDDLPLVERI 138
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
EPH D ID+N+GCPQ +A+RG YGA+L DD PL+ +V
Sbjct: 101 VEPHADAIDLNLGCPQRIARRGRYGAFLMDDLPLVERIV 139
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 30/41 (73%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224
I EPH D D+N+GCPQ +A+RG YGA+L DD PL+ + +
Sbjct: 100 IVEPHADAIDLNLGCPQRIARRGRYGAFLMDDLPLVERIVR 140
>gi|242097028|ref|XP_002439004.1| hypothetical protein SORBIDRAFT_10g029830 [Sorghum bicolor]
gi|241917227|gb|EER90371.1| hypothetical protein SORBIDRAFT_10g029830 [Sorghum bicolor]
Length = 421
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 43/56 (76%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L +AAK+ EPHCD +DIN GCPQ +A+RG+YGA+L D+ PL+ +LV
Sbjct: 146 VQFCANDPDILLQAAKMVEPHCDYVDINFGCPQRIARRGNYGAFLMDNLPLVKSLV 201
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
EPHCD +DIN GCPQ +A+RG+YGA+L D+ PL+ LV + +
Sbjct: 163 VEPHCDYVDINFGCPQRIARRGNYGAFLMDNLPLVKSLVQNLA 205
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 39 QDDWPLLTELVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 97
++D PL + N P + + + EPHCD +DIN GCPQ +A+RG+YGA+L
Sbjct: 139 KEDRPLFVQFCA-------NDPDILLQAAKMVEPHCDYVDINFGCPQRIARRGNYGAFLM 191
Query: 98 DDWPLLTEL 106
D+ PL+ L
Sbjct: 192 DNLPLVKSL 200
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ EPHCD DIN GCPQ +A+RG+YGA+L D+ PL+ L
Sbjct: 162 MVEPHCDYVDINFGCPQRIARRGNYGAFLMDNLPLVKSL 200
>gi|452846144|gb|EME48077.1| hypothetical protein DOTSEDRAFT_69872 [Dothistroma septosporum
NZE10]
Length = 568
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 42/56 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC N+ AAKL +P+CD +D+N+GCPQ +AKRGHYGA+LQ+DW L+ L+
Sbjct: 111 VQFCANEPDVFLRAAKLVQPYCDAVDLNLGCPQGIAKRGHYGAFLQEDWDLIYKLI 166
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 37/46 (80%)
Query: 61 LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+F+ + +P+CD +D+N+GCPQ +AKRGHYGA+LQ+DW L+ +L
Sbjct: 120 VFLRAAKLVQPYCDAVDLNLGCPQGIAKRGHYGAFLQEDWDLIYKL 165
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 34/39 (87%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+P+CD +D+N+GCPQ +AKRGHYGA+LQ+DW L+ +L+
Sbjct: 128 VQPYCDAVDLNLGCPQGIAKRGHYGAFLQEDWDLIYKLI 166
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 33/39 (84%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ +P+CD D+N+GCPQ +AKRGHYGA+LQ+DW L+ +L
Sbjct: 127 LVQPYCDAVDLNLGCPQGIAKRGHYGAFLQEDWDLIYKL 165
>gi|297794265|ref|XP_002865017.1| nitrogen regulation family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297310852|gb|EFH41276.1| nitrogen regulation family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 423
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 43/56 (76%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L EAAK EP+CD +DIN+GCPQ +A+RG+YGA+L D+ PL+ +LV
Sbjct: 147 VQFCANDPDTLLEAAKRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 202
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 9/127 (7%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSW---VSKNGPLFMGPL 66
EP+CD +DIN+GCPQ +A+RG+YGA+L D+ PL+ LV + V + + + P
Sbjct: 163 RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAQNLNVPVSCKIRIFPN 222
Query: 67 FIAEPHCDGIDINIGCPQMVAKRGHY-----GAYLQDDWPLLTELGFKTRSHMCGHSLMF 121
+ + GC ++A G G L+ DW + E+ R + G+ +
Sbjct: 223 LQDTLKYAKMLEDAGC-SLLAVHGRTRDEKDGKKLRADWSAIKEVKNALRIPVLGNGNVR 281
Query: 122 CGNDSKN 128
C D N
Sbjct: 282 CIEDVDN 288
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 30/38 (78%)
Query: 185 AEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
EP+CD DIN+GCPQ +A+RG+YGA+L D+ PL+ L
Sbjct: 164 VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 201
>gi|15240243|ref|NP_201523.1| tRNA-dihydrouridine synthase 4 [Arabidopsis thaliana]
gi|10177609|dbj|BAB10956.1| unnamed protein product [Arabidopsis thaliana]
gi|15146316|gb|AAK83641.1| AT5g67220/K21H1_18 [Arabidopsis thaliana]
gi|20908082|gb|AAM26724.1| AT5g67220/K21H1_18 [Arabidopsis thaliana]
gi|332010932|gb|AED98315.1| tRNA-dihydrouridine synthase 4 [Arabidopsis thaliana]
Length = 423
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 43/56 (76%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L EAAK EP+CD +DIN+GCPQ +A+RG+YGA+L D+ PL+ +LV
Sbjct: 147 VQFCANDPDTLLEAAKRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 202
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 33/44 (75%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
EP+CD +DIN+GCPQ +A+RG+YGA+L D+ PL+ LV +
Sbjct: 163 RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLA 206
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 69 AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHM 114
EP+CD +DIN+GCPQ +A+RG+YGA+L D+ PL+ L K ++
Sbjct: 164 VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAQNL 209
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 30/38 (78%)
Query: 185 AEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
EP+CD DIN+GCPQ +A+RG+YGA+L D+ PL+ L
Sbjct: 164 VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 201
>gi|255956875|ref|XP_002569190.1| Pc21g22200 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590901|emb|CAP97117.1| Pc21g22200 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 536
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC N+ EAA+ PHCD +D+N+GCPQ +AK+GHYGA+LQ+DW L+ LV N
Sbjct: 119 VQFCTNNPDEFLEAARHVAPHCDAVDLNLGCPQGIAKKGHYGAFLQEDWDLIYRLV---N 175
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 176 RLHTELSIP 184
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 67/122 (54%), Gaps = 12/122 (9%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMC-GHSLMFCGNDSKNL 129
PHCD +D+N+GCPQ +AK+GHYGA+LQ+DW L+ L + + + ++ F ++K
Sbjct: 138 PHCDAVDLNLGCPQGIAKKGHYGAFLQEDWDLIYRLVNRLHTELSIPVTVKFRIQETKEK 197
Query: 130 T-EAAKLAEPHCDGIDINIGCPQMVAKRGH--------YGAYLQDDWPLLTNLVYSPNMV 180
T E AK+ G I + ++GH Y YL+D+ P T + + N++
Sbjct: 198 TLEYAKMI--LSAGASIIAVHGRRREQKGHNTGIADWSYIRYLRDNLPADTVIFANGNIL 255
Query: 181 HF 182
++
Sbjct: 256 NY 257
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 32/37 (86%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
PHCD +D+N+GCPQ +AK+GHYGA+LQ+DW L+ LV
Sbjct: 138 PHCDAVDLNLGCPQGIAKKGHYGAFLQEDWDLIYRLV 174
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 30/36 (83%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
PHCD D+N+GCPQ +AK+GHYGA+LQ+DW L+ L
Sbjct: 138 PHCDAVDLNLGCPQGIAKKGHYGAFLQEDWDLIYRL 173
>gi|398391496|ref|XP_003849208.1| hypothetical protein MYCGRDRAFT_48763 [Zymoseptoria tritici IPO323]
gi|339469084|gb|EGP84184.1| hypothetical protein MYCGRDRAFT_48763 [Zymoseptoria tritici IPO323]
Length = 584
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 46/63 (73%), Gaps = 3/63 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC N+ L +AAK+ +P+CD +D+N+GCPQ +AKRGHYGA+LQ+DW + L+ N
Sbjct: 138 VQFCANEPDVLLQAAKIVQPYCDAVDLNLGCPQGIAKRGHYGAFLQEDWDTIYKLI---N 194
Query: 179 MVH 181
+H
Sbjct: 195 TLH 197
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 36 AYLQDDWPLLTELVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGA 94
AYL + + L V F N P + + I +P+CD +D+N+GCPQ +AKRGHYGA
Sbjct: 124 AYLDGNPKMDRPLFVQFC---ANEPDVLLQAAKIVQPYCDAVDLNLGCPQGIAKRGHYGA 180
Query: 95 YLQDDWPLLTEL 106
+LQ+DW + +L
Sbjct: 181 FLQEDWDTIYKL 192
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 33/38 (86%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+P+CD +D+N+GCPQ +AKRGHYGA+LQ+DW + +L+
Sbjct: 156 QPYCDAVDLNLGCPQGIAKRGHYGAFLQEDWDTIYKLI 193
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 32/39 (82%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
I +P+CD D+N+GCPQ +AKRGHYGA+LQ+DW + +L
Sbjct: 154 IVQPYCDAVDLNLGCPQGIAKRGHYGAFLQEDWDTIYKL 192
>gi|302795500|ref|XP_002979513.1| hypothetical protein SELMODRAFT_444257 [Selaginella moellendorffii]
gi|300152761|gb|EFJ19402.1| hypothetical protein SELMODRAFT_444257 [Selaginella moellendorffii]
Length = 378
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 41/56 (73%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC N+ L AAKL EP CD IDIN+GCPQ +AKRG+YGA+L DD PL+ LV
Sbjct: 111 IQFCANNPDTLLAAAKLVEPFCDYIDINLGCPQRIAKRGNYGAFLMDDLPLVQALV 166
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
+D PLL + + + N + + EP CD IDIN+GCPQ +AKRG+YGA+L DD
Sbjct: 105 EDRPLLIQ------FCANNPDTLLAAAKLVEPFCDYIDINLGCPQRIAKRGNYGAFLMDD 158
Query: 100 WPLLTELGFKTRSHM 114
PL+ L K S++
Sbjct: 159 LPLVQALVTKLVSNL 173
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 31/42 (73%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHF 52
EP CD IDIN+GCPQ +AKRG+YGA+L DD PL+ LV
Sbjct: 128 VEPFCDYIDINLGCPQRIAKRGNYGAFLMDDLPLVQALVTKL 169
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 165 DDWPLLTNL-VYSPN--MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTE 221
+D PLL +P+ + + EP CD DIN+GCPQ +AKRG+YGA+L DD PL+
Sbjct: 105 EDRPLLIQFCANNPDTLLAAAKLVEPFCDYIDINLGCPQRIAKRGNYGAFLMDDLPLVQA 164
Query: 222 LGKMAMLVGILD 233
L + LV LD
Sbjct: 165 L--VTKLVSNLD 174
>gi|302687524|ref|XP_003033442.1| hypothetical protein SCHCODRAFT_256941 [Schizophyllum commune H4-8]
gi|300107136|gb|EFI98539.1| hypothetical protein SCHCODRAFT_256941 [Schizophyllum commune H4-8]
Length = 467
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FCGN+ L +A++ E HCD +D+N+GCPQ +AK+GHYG++LQD+W L+ LV N
Sbjct: 103 VQFCGNNPDELLASARIVEAHCDAVDLNLGCPQDIAKKGHYGSWLQDEWELVYKLV---N 159
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 160 TLHENLSIP 168
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
LVV F N + I E HCD +D+N+GCPQ +AK+GHYG++LQD+W L+ +L
Sbjct: 101 LVVQF--CGNNPDELLASARIVEAHCDAVDLNLGCPQDIAKKGHYGSWLQDEWELVYKL 157
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 33/38 (86%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E HCD +D+N+GCPQ +AK+GHYG++LQD+W L+ +LV
Sbjct: 121 EAHCDAVDLNLGCPQDIAKKGHYGSWLQDEWELVYKLV 158
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 32/39 (82%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
I E HCD D+N+GCPQ +AK+GHYG++LQD+W L+ +L
Sbjct: 119 IVEAHCDAVDLNLGCPQDIAKKGHYGSWLQDEWELVYKL 157
>gi|392580094|gb|EIW73221.1| hypothetical protein TREMEDRAFT_13725, partial [Tremella
mesenterica DSM 1558]
Length = 549
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 44/58 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCGND + L +AA+ E CD +DIN+GCPQ +AKRG+YGA+LQDDW L+ ++ +
Sbjct: 125 VQFCGNDPEVLVKAARKVEHRCDAVDINLGCPQGIAKRGNYGAFLQDDWDLIHRIIST 182
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIA 69
+ E CD +DIN+GCPQ +AKRG+YGA+LQDDW L+ ++ S + KN + + F
Sbjct: 141 KVEHRCDAVDINLGCPQGIAKRGNYGAFLQDDWDLIHRII---STLHKNLSIPVTAKFRI 197
Query: 70 EPHCD 74
P D
Sbjct: 198 FPEMD 202
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 29/34 (85%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 103
E CD +DIN+GCPQ +AKRG+YGA+LQDDW L+
Sbjct: 143 EHRCDAVDINLGCPQGIAKRGNYGAFLQDDWDLI 176
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 28/34 (82%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLL 219
E CD DIN+GCPQ +AKRG+YGA+LQDDW L+
Sbjct: 143 EHRCDAVDINLGCPQGIAKRGNYGAFLQDDWDLI 176
>gi|402222464|gb|EJU02530.1| Dus-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 450
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 47/63 (74%), Gaps = 3/63 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + L AA++ EP CD +DIN+GCPQ +A++G YG++LQDDW L+ +L+ N
Sbjct: 99 VQFCANDPEALLAAAQIVEPFCDAVDINLGCPQDIARKGRYGSFLQDDWDLVYSLI---N 155
Query: 179 MVH 181
++H
Sbjct: 156 ILH 158
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 31/39 (79%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
I EP CD +DIN+GCPQ +A++G YG++LQDDW L+ L
Sbjct: 115 IVEPFCDAVDINLGCPQDIARKGRYGSFLQDDWDLVYSL 153
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 31/39 (79%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
EP CD +DIN+GCPQ +A++G YG++LQDDW L+ L+
Sbjct: 116 VEPFCDAVDINLGCPQDIARKGRYGSFLQDDWDLVYSLI 154
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 104 TELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 163
+EL ++ S G L++ + A A PH G M+ G G
Sbjct: 42 SELAWRILSRKYGAQLVYT-----PMISAKTFAVPHA-GDKFRKKVFDMI--HGEEGG-- 91
Query: 164 QDDWPLLTNL-VYSPN--MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLT 220
+D PL+ P + I EP CD DIN+GCPQ +A++G YG++LQDDW L+
Sbjct: 92 AEDRPLIVQFCANDPEALLAAAQIVEPFCDAVDINLGCPQDIARKGRYGSFLQDDWDLVY 151
Query: 221 EL 222
L
Sbjct: 152 SL 153
>gi|302792084|ref|XP_002977808.1| hypothetical protein SELMODRAFT_443602 [Selaginella moellendorffii]
gi|300154511|gb|EFJ21146.1| hypothetical protein SELMODRAFT_443602 [Selaginella moellendorffii]
Length = 378
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 41/56 (73%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC N+ L AAKL EP CD IDIN+GCPQ +AKRG+YGA+L DD PL+ LV
Sbjct: 111 IQFCANNPDTLLAAAKLVEPFCDYIDINLGCPQRIAKRGNYGAFLMDDLPLVQALV 166
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
+D PLL + + + N + + EP CD IDIN+GCPQ +AKRG+YGA+L DD
Sbjct: 105 EDRPLLIQ------FCANNPDTLLAAAKLVEPFCDYIDINLGCPQRIAKRGNYGAFLMDD 158
Query: 100 WPLLTELGFKTRSHM 114
PL+ L K S++
Sbjct: 159 LPLVQALVTKLVSNL 173
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 31/42 (73%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHF 52
EP CD IDIN+GCPQ +AKRG+YGA+L DD PL+ LV
Sbjct: 128 VEPFCDYIDINLGCPQRIAKRGNYGAFLMDDLPLVQALVTKL 169
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 165 DDWPLLTNL-VYSPN--MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTE 221
+D PLL +P+ + + EP CD DIN+GCPQ +AKRG+YGA+L DD PL+
Sbjct: 105 EDRPLLIQFCANNPDTLLAAAKLVEPFCDYIDINLGCPQRIAKRGNYGAFLMDDLPLVQA 164
Query: 222 LGKMAMLVGILD 233
L + LV LD
Sbjct: 165 L--VTKLVSNLD 174
>gi|193699924|ref|XP_001951016.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Acyrthosiphon
pisum]
Length = 471
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 44/58 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCGND K + EA KL E CD ID+N+GCPQ +AKRG YG++LQD+W L+ ++V +
Sbjct: 73 VQFCGNDPKVILEAGKLVEDSCDVIDLNLGCPQAIAKRGFYGSFLQDEWKLIFDIVKT 130
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRG 90
R + +D PL VV F L G L E CD ID+N+GCPQ +AKRG
Sbjct: 58 RKEFFTTCPEDRPL----VVQFCGNDPKVILEAGKL--VEDSCDVIDLNLGCPQAIAKRG 111
Query: 91 HYGAYLQDDWPLLTELGFKTRSHM---CGHSLMFCGNDSKNLTEAAKLAEPHCDGIDI 145
YG++LQD+W L+ ++ R ++ + + +K ++ A L E C + +
Sbjct: 112 FYGSFLQDEWKLIFDIVKTLRDNLKVPVSCKIRIFEDLTKTISYAKMLEEAGCQMLSV 169
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 31/39 (79%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD ID+N+GCPQ +AKRG YG++LQD+W L+ ++V
Sbjct: 90 VEDSCDVIDLNLGCPQAIAKRGFYGSFLQDEWKLIFDIV 128
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 156 RGHYGAYLQDDWPLLTNLV-YSPNMVHFV--IAEPHCDGNDINIGCPQMVAKRGHYGAYL 212
R + +D PL+ P ++ + E CD D+N+GCPQ +AKRG YG++L
Sbjct: 58 RKEFFTTCPEDRPLVVQFCGNDPKVILEAGKLVEDSCDVIDLNLGCPQAIAKRGFYGSFL 117
Query: 213 QDDWPLLTELGK 224
QD+W L+ ++ K
Sbjct: 118 QDEWKLIFDIVK 129
>gi|121700723|ref|XP_001268626.1| dihydrouridine synthase family protein, putative [Aspergillus
clavatus NRRL 1]
gi|119396769|gb|EAW07200.1| dihydrouridine synthase family protein, putative [Aspergillus
clavatus NRRL 1]
Length = 538
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + EAA+ P+CD +D+N+GCPQ +A++GHYGA+LQ+DW L+ L+ N
Sbjct: 125 VQFCANDPDDFIEAARHVAPYCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYKLI---N 181
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 182 RLHKELSIP 190
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 33/37 (89%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +A++GHYGA+LQ+DW L+ +L+
Sbjct: 144 PYCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYKLI 180
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 26/135 (19%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMC-GHSLMFCGNDSKNL 129
P+CD +D+N+GCPQ +A++GHYGA+LQ+DW L+ +L + + + F +SK
Sbjct: 144 PYCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYKLINRLHKELSIPVTAKFRIQESKEK 203
Query: 130 T-EAAKLAEPHCDGIDINIGCPQMVAKRGH--------YGAYLQDDWPLLTNLVYSPNMV 180
T E AK+ G I + ++GH Y YL+D+ P P V
Sbjct: 204 TLEYAKMI--LSAGASIITLHGRTREQKGHNTGLADWSYIRYLRDNLP--------PETV 253
Query: 181 HFVIAEPHCDGNDIN 195
F +GN++N
Sbjct: 254 IF------ANGNNLN 262
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 31/36 (86%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +A++GHYGA+LQ+DW L+ +L
Sbjct: 144 PYCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYKL 179
>gi|312075878|ref|XP_003140612.1| hypothetical protein LOAG_05027 [Loa loa]
Length = 463
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 41/56 (73%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L A +L E CDG+D+N+GCPQ++AKRGHYGAYLQ+D L+ +V
Sbjct: 103 VQFCANDPVTLLTACQLVESFCDGVDLNLGCPQLIAKRGHYGAYLQEDQKLICEMV 158
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 8/68 (11%)
Query: 40 DDWPLLTELVVHFSWVSKNGPL-FMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
DD PL+ + N P+ + + E CDG+D+N+GCPQ++AKRGHYGAYLQ+
Sbjct: 97 DDRPLIVQFCA-------NDPVTLLTACQLVESFCDGVDLNLGCPQLIAKRGHYGAYLQE 149
Query: 99 DWPLLTEL 106
D L+ E+
Sbjct: 150 DQKLICEM 157
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CDG+D+N+GCPQ++AKRGHYGAYLQ+D L+ E+V
Sbjct: 120 VESFCDGVDLNLGCPQLIAKRGHYGAYLQEDQKLICEMV 158
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 165 DDWPLLTNLVYSPNMVHFV---IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTE 221
DD PL+ + + + E CDG D+N+GCPQ++AKRGHYGAYLQ+D L+ E
Sbjct: 97 DDRPLIVQFCANDPVTLLTACQLVESFCDGVDLNLGCPQLIAKRGHYGAYLQEDQKLICE 156
Query: 222 L 222
+
Sbjct: 157 M 157
>gi|425773660|gb|EKV11997.1| Dihydrouridine synthase family protein, putative [Penicillium
digitatum PHI26]
gi|425782648|gb|EKV20547.1| Dihydrouridine synthase family protein, putative [Penicillium
digitatum Pd1]
Length = 536
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC N+ EAA+ PHCD +D+N+GCPQ +AK+GHYGA+LQ+DW L+ LV
Sbjct: 119 VQFCTNNPDEFLEAARHVAPHCDAVDLNLGCPQGIAKKGHYGAFLQEDWDLIYKLV 174
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 68/122 (55%), Gaps = 12/122 (9%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMC-GHSLMFCGNDSKNL 129
PHCD +D+N+GCPQ +AK+GHYGA+LQ+DW L+ +L + + + ++ F D+K
Sbjct: 138 PHCDAVDLNLGCPQGIAKKGHYGAFLQEDWDLIYKLVRRLHTELSVPVTVKFRIQDTKEK 197
Query: 130 T-EAAKLAEPHCDGIDINIGCPQMVAKRGH--------YGAYLQDDWPLLTNLVYSPNMV 180
T E A++ G I + ++GH Y YL+D+ P T + + N++
Sbjct: 198 TLEYARMI--LSAGASIITVHGRRREQKGHNTGVADWGYIRYLRDNLPEDTVIFANGNIL 255
Query: 181 HF 182
++
Sbjct: 256 NY 257
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 33/37 (89%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
PHCD +D+N+GCPQ +AK+GHYGA+LQ+DW L+ +LV
Sbjct: 138 PHCDAVDLNLGCPQGIAKKGHYGAFLQEDWDLIYKLV 174
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 31/36 (86%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
PHCD D+N+GCPQ +AK+GHYGA+LQ+DW L+ +L
Sbjct: 138 PHCDAVDLNLGCPQGIAKKGHYGAFLQEDWDLIYKL 173
>gi|392570548|gb|EIW63720.1| Dus-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 431
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 44/58 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC N++ L ++AKL E HCD +DIN+GCPQ +A+RG YG++LQD+W L+ ++ +
Sbjct: 94 VQFCANNAAQLLKSAKLLEAHCDAVDINLGCPQDIARRGRYGSFLQDEWELIHEMIST 151
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + N + + E HCD +DIN+GCPQ +A+RG YG++LQD+W L+ E+
Sbjct: 92 LIVQF--CANNAAQLLKSAKLLEAHCDAVDINLGCPQDIARRGRYGSFLQDEWELIHEM 148
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 32/38 (84%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E HCD +DIN+GCPQ +A+RG YG++LQD+W L+ E++
Sbjct: 112 EAHCDAVDINLGCPQDIARRGRYGSFLQDEWELIHEMI 149
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 31/39 (79%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E HCD DIN+GCPQ +A+RG YG++LQD+W L+ E+
Sbjct: 110 LLEAHCDAVDINLGCPQDIARRGRYGSFLQDEWELIHEM 148
>gi|307110102|gb|EFN58339.1| hypothetical protein CHLNCDRAFT_16859, partial [Chlorella
variabilis]
Length = 308
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 61/122 (50%), Gaps = 17/122 (13%)
Query: 64 GPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL-TELGFKTRSHMCGHSL--- 119
P + P D ++ Q+ + G GAY P+L L +T S+ H
Sbjct: 10 SPKYWVAPMVDQSELAFR--QLTRRHGATGAYT----PMLHARLFLETPSYRAEHFTTTQ 63
Query: 120 -------MFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTN 172
FC ND L AA+L PH DG+D+N+GCPQ +AKRG YG++L DD PL+
Sbjct: 64 QDRPLLAQFCANDPDILLSAARLVAPHVDGVDLNLGCPQRIAKRGKYGSFLMDDLPLVER 123
Query: 173 LV 174
LV
Sbjct: 124 LV 125
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRG 90
R + Q D PLL + + + + + + + PH DG+D+N+GCPQ +AKRG
Sbjct: 55 RAEHFTTTQQDRPLLAQ------FCANDPDILLSAARLVAPHVDGVDLNLGCPQRIAKRG 108
Query: 91 HYGAYLQDDWPLLTEL 106
YG++L DD PL+ L
Sbjct: 109 KYGSFLMDDLPLVERL 124
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPH 72
PH DG+D+N+GCPQ +AKRG YG++L DD PL+ LV + P+ +
Sbjct: 89 PHVDGVDLNLGCPQRIAKRGKYGSFLMDDLPLVERLVRQLA------ANLAVPVTVKIRR 142
Query: 73 CDGIDINIGCPQMVAKRG 90
D + + QM+ + G
Sbjct: 143 FDCVQRTVQYAQMLERAG 160
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 156 RGHYGAYLQDDWPLLTNLVYS-PNMVHFV--IAEPHCDGNDINIGCPQMVAKRGHYGAYL 212
R + Q D PLL + P+++ + PH DG D+N+GCPQ +AKRG YG++L
Sbjct: 55 RAEHFTTTQQDRPLLAQFCANDPDILLSAARLVAPHVDGVDLNLGCPQRIAKRGKYGSFL 114
Query: 213 QDDWPLLTELGK 224
DD PL+ L +
Sbjct: 115 MDDLPLVERLVR 126
>gi|393908938|gb|EJD75253.1| hypothetical protein, variant [Loa loa]
Length = 421
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 41/56 (73%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L A +L E CDG+D+N+GCPQ++AKRGHYGAYLQ+D L+ +V
Sbjct: 103 VQFCANDPVTLLTACQLVESFCDGVDLNLGCPQLIAKRGHYGAYLQEDQKLICEMV 158
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 8/68 (11%)
Query: 40 DDWPLLTELVVHFSWVSKNGPL-FMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
DD PL+ + N P+ + + E CDG+D+N+GCPQ++AKRGHYGAYLQ+
Sbjct: 97 DDRPLIVQFCA-------NDPVTLLTACQLVESFCDGVDLNLGCPQLIAKRGHYGAYLQE 149
Query: 99 DWPLLTEL 106
D L+ E+
Sbjct: 150 DQKLICEM 157
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CDG+D+N+GCPQ++AKRGHYGAYLQ+D L+ E+V
Sbjct: 120 VESFCDGVDLNLGCPQLIAKRGHYGAYLQEDQKLICEMV 158
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 165 DDWPLLTNLVYSPNMVHFV---IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTE 221
DD PL+ + + + E CDG D+N+GCPQ++AKRGHYGAYLQ+D L+ E
Sbjct: 97 DDRPLIVQFCANDPVTLLTACQLVESFCDGVDLNLGCPQLIAKRGHYGAYLQEDQKLICE 156
Query: 222 L 222
+
Sbjct: 157 M 157
>gi|393908937|gb|EFO23454.2| hypothetical protein LOAG_05027 [Loa loa]
Length = 497
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 41/56 (73%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L A +L E CDG+D+N+GCPQ++AKRGHYGAYLQ+D L+ +V
Sbjct: 103 VQFCANDPVTLLTACQLVESFCDGVDLNLGCPQLIAKRGHYGAYLQEDQKLICEMV 158
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 8/68 (11%)
Query: 40 DDWPLLTELVVHFSWVSKNGPL-FMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
DD PL+ + N P+ + + E CDG+D+N+GCPQ++AKRGHYGAYLQ+
Sbjct: 97 DDRPLIVQFCA-------NDPVTLLTACQLVESFCDGVDLNLGCPQLIAKRGHYGAYLQE 149
Query: 99 DWPLLTEL 106
D L+ E+
Sbjct: 150 DQKLICEM 157
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 33/39 (84%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CDG+D+N+GCPQ++AKRGHYGAYLQ+D L+ E+V
Sbjct: 120 VESFCDGVDLNLGCPQLIAKRGHYGAYLQEDQKLICEMV 158
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 165 DDWPLLTNLVYSPNMVHFV---IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTE 221
DD PL+ + + + E CDG D+N+GCPQ++AKRGHYGAYLQ+D L+ E
Sbjct: 97 DDRPLIVQFCANDPVTLLTACQLVESFCDGVDLNLGCPQLIAKRGHYGAYLQEDQKLICE 156
Query: 222 L 222
+
Sbjct: 157 M 157
>gi|198436587|ref|XP_002123151.1| PREDICTED: similar to PP3111 protein [Ciona intestinalis]
Length = 474
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 45/58 (77%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC ND LT++A LA+ HCD +DIN+GCPQ +AKRG+YGA+L ++W L+T L+ +
Sbjct: 78 VQFCANDPDILTKSALLAQDHCDAVDINLGCPQTIAKRGNYGAFLGENWELVTKLIKA 135
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 8/68 (11%)
Query: 40 DDWPLLTELVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
+D PL+ + N P + +A+ HCD +DIN+GCPQ +AKRG+YGA+L +
Sbjct: 72 EDRPLIVQFCA-------NDPDILTKSALLAQDHCDAVDINLGCPQTIAKRGNYGAFLGE 124
Query: 99 DWPLLTEL 106
+W L+T+L
Sbjct: 125 NWELVTKL 132
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 45/63 (71%), Gaps = 3/63 (4%)
Query: 165 DDWPLLTNLVYS-PNMV--HFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTE 221
+D PL+ + P+++ ++A+ HCD DIN+GCPQ +AKRG+YGA+L ++W L+T+
Sbjct: 72 EDRPLIVQFCANDPDILTKSALLAQDHCDAVDINLGCPQTIAKRGNYGAFLGENWELVTK 131
Query: 222 LGK 224
L K
Sbjct: 132 LIK 134
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 32/36 (88%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
HCD +DIN+GCPQ +AKRG+YGA+L ++W L+T+L+
Sbjct: 98 HCDAVDINLGCPQTIAKRGNYGAFLGENWELVTKLI 133
>gi|189208310|ref|XP_001940488.1| tRNA-dihydrouridine synthase C [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976581|gb|EDU43207.1| tRNA-dihydrouridine synthase C [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 801
Score = 76.6 bits (187), Expect = 8e-12, Method: Composition-based stats.
Identities = 28/57 (49%), Positives = 41/57 (71%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
++ FC ND + AAK P CD +D+N+GCPQ +AKRG YGA+LQ+DW L++ ++
Sbjct: 136 TVQFCSNDPDDFLRAAKHVAPFCDAVDLNLGCPQGIAKRGKYGAFLQEDWDLISRMI 192
Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/37 (56%), Positives = 31/37 (83%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P CD +D+N+GCPQ +AKRG YGA+LQ+DW L++ ++
Sbjct: 156 PFCDAVDLNLGCPQGIAKRGKYGAFLQEDWDLISRMI 192
Score = 61.2 bits (147), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/36 (58%), Positives = 30/36 (83%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P CD +D+N+GCPQ +AKRG YGA+LQ+DW L++ +
Sbjct: 156 PFCDAVDLNLGCPQGIAKRGKYGAFLQEDWDLISRM 191
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/36 (58%), Positives = 29/36 (80%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P CD D+N+GCPQ +AKRG YGA+LQ+DW L++ +
Sbjct: 156 PFCDAVDLNLGCPQGIAKRGKYGAFLQEDWDLISRM 191
>gi|146417549|ref|XP_001484743.1| hypothetical protein PGUG_02472 [Meyerozyma guilliermondii ATCC
6260]
gi|146390216|gb|EDK38374.1| hypothetical protein PGUG_02472 [Meyerozyma guilliermondii ATCC
6260]
Length = 416
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 56/112 (50%), Gaps = 21/112 (18%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L EAAKL E CD +D+N+GCPQ +AK+G YGA+L DDW +
Sbjct: 81 VQFCANDPNYLLEAAKLVEDKCDAVDLNLGCPQGIAKKGKYGAFLMDDW----------D 130
Query: 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVG 230
+VH +I H N+ CP R + DDW KM + G
Sbjct: 131 LVHKLIRTLHD-----NLKCPVTAKIRVY------DDWEKSLAYAKMVLDAG 171
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +AK+G YGA+L DDW L+ +L+
Sbjct: 98 VEDKCDAVDLNLGCPQGIAKKGKYGAFLMDDWDLVHKLI 136
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 41 DWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 100
D L L+V F N L L E CD +D+N+GCPQ +AK+G YGA+L DDW
Sbjct: 72 DRELDRPLIVQFCANDPNYLLEAAKL--VEDKCDAVDLNLGCPQGIAKKGKYGAFLMDDW 129
Query: 101 PLLTEL 106
L+ +L
Sbjct: 130 DLVHKL 135
>gi|50420411|ref|XP_458741.1| DEHA2D06512p [Debaryomyces hansenii CBS767]
gi|49654408|emb|CAG86885.1| DEHA2D06512p [Debaryomyces hansenii CBS767]
Length = 423
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 21/112 (18%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC NDS L +AAK E CD +D+N+GCPQ +AK+G+YGA+L DDW L+ L+ + +
Sbjct: 82 VQFCANDSDYLLKAAKFVEDKCDAVDLNLGCPQGIAKKGNYGAFLMDDWDLVYKLIKNLH 141
Query: 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVG 230
N+ CP R + DDW E K+ + G
Sbjct: 142 ---------------DNLKCPVTAKIRVY------DDWEKSLEYAKLVLNAG 172
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + + + E CD +D+N+GCPQ +AK+G+YGA+L DDW L+ +L
Sbjct: 80 LIVQF--CANDSDYLLKAAKFVEDKCDAVDLNLGCPQGIAKKGNYGAFLMDDWDLVYKL 136
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 31/39 (79%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +AK+G+YGA+L DDW L+ +L+
Sbjct: 99 VEDKCDAVDLNLGCPQGIAKKGNYGAFLMDDWDLVYKLI 137
>gi|302308179|ref|NP_985016.2| AER158Cp [Ashbya gossypii ATCC 10895]
gi|299789331|gb|AAS52840.2| AER158Cp [Ashbya gossypii ATCC 10895]
gi|374108239|gb|AEY97146.1| FAER158Cp [Ashbya gossypii FDAG1]
Length = 434
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + L +AA+L E CD +D+N+GCPQ +AK+GHYG++L ++W L+ NL+ N
Sbjct: 90 VQFCANDPEYLLKAAQLVENKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLVANLI---N 146
Query: 179 MVHFVIAEP 187
+H +A P
Sbjct: 147 TLHTKLAVP 155
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +AK+GHYG++L ++W L+ L+
Sbjct: 107 VENKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLVANLI 145
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 48 LVVHFSWVSKNGPLFM-GPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
LVV F N P ++ + E CD +D+N+GCPQ +AK+GHYG++L ++W L+ L
Sbjct: 88 LVVQFC---ANDPEYLLKAAQLVENKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLVANL 144
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E CD D+N+GCPQ +AK+GHYG++L ++W L+ L
Sbjct: 106 LVENKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLVANL 144
>gi|449295999|gb|EMC92019.1| hypothetical protein BAUCODRAFT_77848 [Baudoinia compniacensis UAMH
10762]
Length = 510
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 43/58 (74%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC ND + L EAA+ + HCD +D+N+GCPQ +AKRGHYGA+LQ+DW + L+ +
Sbjct: 97 VQFCANDPEVLLEAARHVQDHCDAVDLNLGCPQGIAKRGHYGAFLQEDWGTIHKLIRT 154
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 31/36 (86%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
HCD +D+N+GCPQ +AKRGHYGA+LQ+DW + +L+
Sbjct: 117 HCDAVDLNLGCPQGIAKRGHYGAFLQEDWGTIHKLI 152
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 30/35 (85%)
Query: 72 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
HCD +D+N+GCPQ +AKRGHYGA+LQ+DW + +L
Sbjct: 117 HCDAVDLNLGCPQGIAKRGHYGAFLQEDWGTIHKL 151
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 14/82 (17%)
Query: 155 KRGHYGAYLQDDWPLLTN--LVYSPNMVHFVIAEP------------HCDGNDINIGCPQ 200
+ H+ DD P L + P V F +P HCD D+N+GCPQ
Sbjct: 70 RASHFQPLKDDDSPHLDGNPKIDRPLFVQFCANDPEVLLEAARHVQDHCDAVDLNLGCPQ 129
Query: 201 MVAKRGHYGAYLQDDWPLLTEL 222
+AKRGHYGA+LQ+DW + +L
Sbjct: 130 GIAKRGHYGAFLQEDWGTIHKL 151
>gi|403419264|emb|CCM05964.1| predicted protein [Fibroporia radiculosa]
Length = 495
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 46/63 (73%), Gaps = 3/63 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + L +A+ E +CD +D+N+GCPQ +A+RGHYG++LQD+W L+ NL+ N
Sbjct: 96 VQFCANDPEQLLVSARAVEGYCDAVDVNLGCPQDIARRGHYGSFLQDEWDLIYNLI---N 152
Query: 179 MVH 181
+H
Sbjct: 153 TLH 155
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 32/38 (84%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E +CD +D+N+GCPQ +A+RGHYG++LQD+W L+ L+
Sbjct: 114 EGYCDAVDVNLGCPQDIARRGHYGSFLQDEWDLIYNLI 151
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 31/37 (83%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
E +CD +D+N+GCPQ +A+RGHYG++LQD+W L+ L
Sbjct: 114 EGYCDAVDVNLGCPQDIARRGHYGSFLQDEWDLIYNL 150
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 165 DDWPLLTNL-VYSPN--MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTE 221
+D PL+ P +V E +CD D+N+GCPQ +A+RGHYG++LQD+W L+
Sbjct: 90 EDRPLIVQFCANDPEQLLVSARAVEGYCDAVDVNLGCPQDIARRGHYGSFLQDEWDLIYN 149
Query: 222 L 222
L
Sbjct: 150 L 150
>gi|340053464|emb|CCC47757.1| putative dihydrouridine synthase [Trypanosoma vivax Y486]
Length = 508
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 109 KTRSHMCGHSLM--FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 166
KT C H L FCGND + + AA+ E +C+ +D N+GCPQ +A+RGHYG++L +D
Sbjct: 133 KTNRQDCDHPLFVQFCGNDPETVLTAARYVEDYCEAVDFNLGCPQGIARRGHYGSFLMED 192
Query: 167 WPLLTNLVY 175
W L+ N+++
Sbjct: 193 WELIHNILH 201
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E +C+ +D N+GCPQ +A+RGHYG++L +DW L+ ++
Sbjct: 162 VEDYCEAVDFNLGCPQGIARRGHYGSFLMEDWELIHNIL 200
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 28/35 (80%)
Query: 69 AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 103
E +C+ +D N+GCPQ +A+RGHYG++L +DW L+
Sbjct: 162 VEDYCEAVDFNLGCPQGIARRGHYGSFLMEDWELI 196
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 185 AEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAML 228
E +C+ D N+GCPQ +A+RGHYG++L +DW L+ + M ++
Sbjct: 162 VEDYCEAVDFNLGCPQGIARRGHYGSFLMEDWELIHNILHMLVV 205
>gi|389739275|gb|EIM80469.1| Dus-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 515
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + L +AK+ E HCD IDIN+GCPQ +AK+G YG++LQD+W L+ ++ N
Sbjct: 94 VQFCANDPEQLLTSAKVLESHCDAIDINLGCPQDIAKKGRYGSFLQDEWDLIFKMI---N 150
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 151 TLHENLSIP 159
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 32/38 (84%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E HCD IDIN+GCPQ +AK+G YG++LQD+W L+ +++
Sbjct: 112 ESHCDAIDINLGCPQDIAKKGRYGSFLQDEWDLIFKMI 149
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 32/39 (82%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ E HCD IDIN+GCPQ +AK+G YG++LQD+W L+ ++
Sbjct: 110 VLESHCDAIDINLGCPQDIAKKGRYGSFLQDEWDLIFKM 148
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 31/39 (79%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E HCD DIN+GCPQ +AK+G YG++LQD+W L+ ++
Sbjct: 110 VLESHCDAIDINLGCPQDIAKKGRYGSFLQDEWDLIFKM 148
>gi|417401582|gb|JAA47671.1| Putative trna-dihydrouridine synthase [Desmodus rotundus]
Length = 475
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC N+ + +A LA+ CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANNPEVFVQAGLLAQDCCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI---Q 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPL 185
Query: 233 DNTGSW 238
+ SW
Sbjct: 186 SGSASW 191
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 47/77 (61%), Gaps = 6/77 (7%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
K Y +D PL+ + + + N +F+ +A+ CD ID+N+GCPQM+AKR
Sbjct: 62 KENLYCEVCPEDRPLIVQ------FCANNPEVFVQAGLLAQDCCDAIDLNLGCPQMIAKR 115
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYGA+LQ++W LL +
Sbjct: 116 GHYGAFLQEEWDLLQRM 132
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 31/35 (88%)
Query: 15 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 99 CDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMI 133
>gi|332251618|ref|XP_003274943.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Nomascus leucogenys]
Length = 438
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 46/63 (73%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMILLLL 137
Query: 179 MVH 181
VH
Sbjct: 138 TVH 140
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 40/53 (75%), Gaps = 2/53 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 100
L+V F + + +F+ +A+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W
Sbjct: 76 LIVQF--CANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEW 126
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 155 KRGHYGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAY 211
K Y +D PL+ + V ++A+ +CD D+N+GCPQM+AKRGHYGA+
Sbjct: 62 KENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAF 121
Query: 212 LQDDW--------PLLTELGKMAMLVGILDNTGSW 238
LQD+W LLT G+ G L SW
Sbjct: 122 LQDEWDLLQRMILLLLTVHGRTKEQKGPLSGAASW 156
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 37/53 (69%), Gaps = 5/53 (9%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDW-----PLLTELVVHFSWVSKNGPL 61
+CD ID+N+GCPQM+AKRGHYGA+LQD+W +L L VH + GPL
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMILLLLTVHGRTKEQKGPL 150
>gi|296082372|emb|CBI21377.3| unnamed protein product [Vitis vinifera]
Length = 316
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 43/56 (76%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L EAA+ EP+CD +DIN+GCPQ +A+RG+YGA+L D+ PL+ +LV
Sbjct: 127 VQFCANDPDTLLEAAQRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 182
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 32/40 (80%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
EP+CD +DIN+GCPQ +A+RG+YGA+L D+ PL+ LV
Sbjct: 143 RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 182
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 32/41 (78%)
Query: 69 AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFK 109
EP+CD +DIN+GCPQ +A+RG+YGA+L D+ PL+ L K
Sbjct: 144 VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEK 184
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 34/44 (77%), Gaps = 1/44 (2%)
Query: 185 AEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL-GKMAM 227
EP+CD DIN+GCPQ +A+RG+YGA+L D+ PL+ L K+A+
Sbjct: 144 VEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL 187
>gi|326433345|gb|EGD78915.1| hypothetical protein PTSG_01890 [Salpingoeca sp. ATCC 50818]
Length = 459
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 91 HYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCP 150
H G +++D +L F T + + FCGND + EAAK E CD +D+N+GCP
Sbjct: 51 HSGVFVRD--ANYRKLNFTTCAEDRPLIVQFCGNDPDTVLEAAKYVEDKCDAVDLNLGCP 108
Query: 151 QMVAKRGHYGAYLQDDWPLLTNLV 174
Q +A+RG YGA+LQD+W ++ +V
Sbjct: 109 QNIARRGRYGAFLQDEWDTISAIV 132
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHF 52
E CD +D+N+GCPQ +A+RG YGA+LQD+W ++ +V
Sbjct: 94 VEDKCDAVDLNLGCPQNIARRGRYGAFLQDEWDTISAIVKRL 135
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 29/37 (78%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
E CD +D+N+GCPQ +A+RG YGA+LQD+W ++ +
Sbjct: 95 EDKCDAVDLNLGCPQNIARRGRYGAFLQDEWDTISAI 131
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 29/39 (74%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224
E CD D+N+GCPQ +A+RG YGA+LQD+W ++ + K
Sbjct: 95 EDKCDAVDLNLGCPQNIARRGRYGAFLQDEWDTISAIVK 133
>gi|67517419|ref|XP_658560.1| hypothetical protein AN0956.2 [Aspergillus nidulans FGSC A4]
gi|40746829|gb|EAA65985.1| hypothetical protein AN0956.2 [Aspergillus nidulans FGSC A4]
gi|259488751|tpe|CBF88446.1| TPA: dihydrouridine synthase family protein, putative
(AFU_orthologue; AFUA_1G16550) [Aspergillus nidulans
FGSC A4]
Length = 563
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + AA+ P+CD +D+N+GCPQ +A+RGHYGA+LQ+DW L+ L+ N
Sbjct: 127 VQFCANDPDDFFNAARHVAPYCDAVDLNLGCPQGIARRGHYGAFLQEDWDLIYKLI---N 183
Query: 179 MVHFVIAEP 187
+H + P
Sbjct: 184 KLHMELEVP 192
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 33/37 (89%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +A+RGHYGA+LQ+DW L+ +L+
Sbjct: 146 PYCDAVDLNLGCPQGIARRGHYGAFLQEDWDLIYKLI 182
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 26/135 (19%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHM-CGHSLMFCGNDSKNL 129
P+CD +D+N+GCPQ +A+RGHYGA+LQ+DW L+ +L K + + F +SK
Sbjct: 146 PYCDAVDLNLGCPQGIARRGHYGAFLQEDWDLIYKLINKLHMELEVPVTAKFRIQESKEK 205
Query: 130 T-EAAKLAEPHCDGIDINIGCPQMVAKRGH--------YGAYLQDDWPLLTNLVYSPNMV 180
T E AK+ G I + ++GH Y YL+D+ P P+ V
Sbjct: 206 TLEYAKMI--LSAGASIITLHGRTREQKGHNTGLADWSYIRYLRDNLP--------PDTV 255
Query: 181 HFVIAEPHCDGNDIN 195
F +GN++N
Sbjct: 256 IF------ANGNNLN 264
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 31/36 (86%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +A+RGHYGA+LQ+DW L+ +L
Sbjct: 146 PYCDAVDLNLGCPQGIARRGHYGAFLQEDWDLIYKL 181
>gi|125556734|gb|EAZ02340.1| hypothetical protein OsI_24443 [Oryza sativa Indica Group]
Length = 396
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 43/56 (76%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L +AAK+ EP+CD +DIN GCPQ +A+RG+YGA+L D+ PL+ +LV
Sbjct: 121 VQFCANDPDILLQAAKIVEPYCDYVDINFGCPQRIARRGYYGAFLMDNLPLIKSLV 176
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
EP+CD +DIN GCPQ +A+RG+YGA+L D+ PL+ LV + S
Sbjct: 138 VEPYCDYVDINFGCPQRIARRGYYGAFLMDNLPLIKSLVQNLS 180
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 39 QDDWPLLTELVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 97
++D PL + N P + + I EP+CD +DIN GCPQ +A+RG+YGA+L
Sbjct: 114 KEDRPLFVQFCA-------NDPDILLQAAKIVEPYCDYVDINFGCPQRIARRGYYGAFLM 166
Query: 98 DDWPLLTEL 106
D+ PL+ L
Sbjct: 167 DNLPLIKSL 175
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
I EP+CD DIN GCPQ +A+RG+YGA+L D+ PL+ L
Sbjct: 137 IVEPYCDYVDINFGCPQRIARRGYYGAFLMDNLPLIKSL 175
>gi|225438801|ref|XP_002283225.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Vitis vinifera]
Length = 424
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 43/56 (76%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L EAA+ EP+CD +DIN+GCPQ +A+RG+YGA+L D+ PL+ +LV
Sbjct: 151 VQFCANDPDTLLEAAQRVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 206
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 32/40 (80%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
EP+CD +DIN+GCPQ +A+RG+YGA+L D+ PL+ LV
Sbjct: 167 RVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 206
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 31/37 (83%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
EP+CD +DIN+GCPQ +A+RG+YGA+L D+ PL+ L
Sbjct: 169 EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSL 205
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL-GKMAM 227
EP+CD DIN+GCPQ +A+RG+YGA+L D+ PL+ L K+A+
Sbjct: 169 EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAL 211
>gi|260947234|ref|XP_002617914.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238847786|gb|EEQ37250.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 415
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 21/112 (18%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + L +AAK E CD +D+N+GCPQ +A++G+YGA+L DDW L+ L+
Sbjct: 81 VQFCANDPEYLLQAAKFVEDKCDAVDLNLGCPQGIARKGNYGAFLMDDWDLVYKLI---R 137
Query: 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVG 230
+H N+ CP R + DDW E KM + G
Sbjct: 138 KLH------------DNLKCPVTAKIRVY------DDWEKSLEYAKMVLSAG 171
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 6/61 (9%)
Query: 48 LVVHFSWVSKNGP--LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTE 105
LVV F N P L F+ E CD +D+N+GCPQ +A++G+YGA+L DDW L+ +
Sbjct: 79 LVVQFC---ANDPEYLLQAAKFV-EDKCDAVDLNLGCPQGIARKGNYGAFLMDDWDLVYK 134
Query: 106 L 106
L
Sbjct: 135 L 135
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 31/39 (79%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +A++G+YGA+L DDW L+ +L+
Sbjct: 98 VEDKCDAVDLNLGCPQGIARKGNYGAFLMDDWDLVYKLI 136
>gi|119494427|ref|XP_001264109.1| dihydrouridine synthase family protein, putative [Neosartorya
fischeri NRRL 181]
gi|119412271|gb|EAW22212.1| dihydrouridine synthase family protein, putative [Neosartorya
fischeri NRRL 181]
Length = 527
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 42/56 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND + EAA+ P+CD +D+N+GCPQ +A++GHYGA+LQ+DW L+ L+
Sbjct: 119 VQFCANDPDDFLEAARHVAPYCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYKLI 174
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 33/37 (89%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +A++GHYGA+LQ+DW L+ +L+
Sbjct: 138 PYCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYKLI 174
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 32/36 (88%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P+CD +D+N+GCPQ +A++GHYGA+LQ+DW L+ +L
Sbjct: 138 PYCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYKL 173
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 31/36 (86%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +A++GHYGA+LQ+DW L+ +L
Sbjct: 138 PYCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYKL 173
>gi|19112778|ref|NP_595986.1| tRNA dihydrouridine synthase Dus1 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74638589|sp|Q9HGN6.1|DUS1_SCHPO RecName: Full=tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 1
gi|9967699|emb|CAC05725.1| tRNA dihydrouridine synthase Dus1 (predicted) [Schizosaccharomyces
pombe]
Length = 399
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 46/56 (82%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FCGND + + +AAK+A P+CD +D+N+GCPQ +AK+G YG++LQ++W L+ +++
Sbjct: 79 IQFCGNDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIESII 134
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 35/48 (72%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMC 115
IA P+CD +D+N+GCPQ +AK+G YG++LQ++W L+ + K + +
Sbjct: 95 IAAPYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIESIITKLHTELS 142
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 31/40 (77%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHF 52
P+CD +D+N+GCPQ +AK+G YG++LQ++W L+ ++
Sbjct: 98 PYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIESIITKL 137
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 31/39 (79%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
IA P+CD D+N+GCPQ +AK+G YG++LQ++W L+ +
Sbjct: 95 IAAPYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIESI 133
>gi|70996530|ref|XP_753020.1| dihydrouridine synthase family protein [Aspergillus fumigatus
Af293]
gi|66850655|gb|EAL90982.1| dihydrouridine synthase family protein, putative [Aspergillus
fumigatus Af293]
gi|159131754|gb|EDP56867.1| dihydrouridine synthase family protein, putative [Aspergillus
fumigatus A1163]
Length = 541
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 42/56 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND + EAA+ P+CD +D+N+GCPQ +A++GHYGA+LQ+DW L+ L+
Sbjct: 129 VQFCANDPDDFLEAARHVAPYCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYKLI 184
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 33/37 (89%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +A++GHYGA+LQ+DW L+ +L+
Sbjct: 148 PYCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYKLI 184
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 32/36 (88%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P+CD +D+N+GCPQ +A++GHYGA+LQ+DW L+ +L
Sbjct: 148 PYCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYKL 183
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 31/36 (86%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +A++GHYGA+LQ+DW L+ +L
Sbjct: 148 PYCDAVDLNLGCPQGIARKGHYGAFLQEDWDLIYKL 183
>gi|149240295|ref|XP_001526023.1| tRNA-dihydrouridine synthase 1 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450146|gb|EDK44402.1| tRNA-dihydrouridine synthase 1 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 516
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/112 (38%), Positives = 55/112 (49%), Gaps = 21/112 (18%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L +AAKL E CD +D+N+GCPQ +A+RG YGA+L DDW L
Sbjct: 153 VQFCANDPDYLLQAAKLVENQCDAVDLNLGCPQGIARRGKYGAFLMDDWEL--------- 203
Query: 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVG 230
VH +I H N+ P R + DDW E KM + G
Sbjct: 204 -VHKLIRTLHD-----NLSVPVTAKIRVY------DDWEKSLEYAKMVLDAG 243
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +A+RG YGA+L DDW L+ +L+
Sbjct: 170 VENQCDAVDLNLGCPQGIARRGKYGAFLMDDWELVHKLI 208
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 30/39 (76%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ E CD +D+N+GCPQ +A+RG YGA+L DDW L+ +L
Sbjct: 169 LVENQCDAVDLNLGCPQGIARRGKYGAFLMDDWELVHKL 207
>gi|391873998|gb|EIT82953.1| tRNA-dihydrouridine synthase [Aspergillus oryzae 3.042]
Length = 536
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 42/56 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC N+ + EAA+ P+CD +D+N+GCPQ +A+RGHYGA+LQ+DW L+ L+
Sbjct: 124 VQFCANNPDDFLEAARHVAPYCDAVDLNLGCPQGIARRGHYGAFLQEDWDLIYKLI 179
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 14/168 (8%)
Query: 25 PQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQ 84
P A +G YL + + L V F + N F+ P+CD +D+N+GCPQ
Sbjct: 99 PTRAAIKGDDTPYLDGNPAIDRPLFVQF--CANNPDDFLEAARHVAPYCDAVDLNLGCPQ 156
Query: 85 MVAKRGHYGAYLQDDWPLLTELGFKTRSHM-CGHSLMFCGNDSKNLT-EAAKLAEPHCDG 142
+A+RGHYGA+LQ+DW L+ +L K + + + F ++K T E AK+ G
Sbjct: 157 GIARRGHYGAFLQEDWDLIYKLINKLHTELDVPVTAKFRIQETKEKTLEYAKMI--LSAG 214
Query: 143 IDINIGCPQMVAKRGH--------YGAYLQDDWPLLTNLVYSPNMVHF 182
I + ++GH Y YL+D+ P T + + N++++
Sbjct: 215 ASIITLHGRTREQKGHNTGVADWSYIRYLRDNLPPETVIFANGNILNY 262
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 33/37 (89%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +A+RGHYGA+LQ+DW L+ +L+
Sbjct: 143 PYCDAVDLNLGCPQGIARRGHYGAFLQEDWDLIYKLI 179
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 31/36 (86%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +A+RGHYGA+LQ+DW L+ +L
Sbjct: 143 PYCDAVDLNLGCPQGIARRGHYGAFLQEDWDLIYKL 178
>gi|238483959|ref|XP_002373218.1| dihydrouridine synthase family protein, putative [Aspergillus
flavus NRRL3357]
gi|220701268|gb|EED57606.1| dihydrouridine synthase family protein, putative [Aspergillus
flavus NRRL3357]
Length = 474
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 42/56 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC N+ + EAA+ P+CD +D+N+GCPQ +A+RGHYGA+LQ+DW L+ L+
Sbjct: 124 VQFCANNPDDFLEAARHVAPYCDAVDLNLGCPQGIARRGHYGAFLQEDWDLIYKLI 179
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 22/210 (10%)
Query: 25 PQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQ 84
P A +G YL + + L V F + N F+ P+CD +D+N+GCPQ
Sbjct: 99 PTRAAIKGDDTPYLDGNPAIDRPLFVQF--CANNPDDFLEAARHVAPYCDAVDLNLGCPQ 156
Query: 85 MVAKRGHYGAYLQDDWPLLTELGFKTRSHM-CGHSLMFCGNDSKNLT-EAAKLAEPHCDG 142
+A+RGHYGA+LQ+DW L+ +L K + + + F ++K T E AK+ G
Sbjct: 157 GIARRGHYGAFLQEDWDLIYKLINKLHTELDVPVTAKFRIQETKEKTLEYAKMI--LSAG 214
Query: 143 IDINIGCPQMVAKRGH--------YGAYLQDDWPLLTNLVYSPNMVHF-----VIAEPHC 189
I + ++GH Y YL+D+ P T + + N++++ + E
Sbjct: 215 ASIITLHGRTREQKGHNTGVADWSYIRYLRDNLPPETVIFANGNILNYDDLERCLEETGA 274
Query: 190 DG---NDINIGCPQMVAKRGHYGAYLQDDW 216
DG + N+ P + +K G+ ++ W
Sbjct: 275 DGVMSAEGNLSDPSVFSKPPPVGSEGREYW 304
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 33/37 (89%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +A+RGHYGA+LQ+DW L+ +L+
Sbjct: 143 PYCDAVDLNLGCPQGIARRGHYGAFLQEDWDLIYKLI 179
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 31/36 (86%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +A+RGHYGA+LQ+DW L+ +L
Sbjct: 143 PYCDAVDLNLGCPQGIARRGHYGAFLQEDWDLIYKL 178
>gi|169767132|ref|XP_001818037.1| dihydrouridine synthase family protein [Aspergillus oryzae RIB40]
gi|83765892|dbj|BAE56035.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 536
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 42/56 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC N+ + EAA+ P+CD +D+N+GCPQ +A+RGHYGA+LQ+DW L+ L+
Sbjct: 124 VQFCANNPDDFLEAARHVAPYCDAVDLNLGCPQGIARRGHYGAFLQEDWDLIYKLI 179
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 98/210 (46%), Gaps = 22/210 (10%)
Query: 25 PQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQ 84
P A +G YL + + L V F + N F+ P+CD +D+N+GCPQ
Sbjct: 99 PTRAAIKGDDTPYLDGNPAIDRPLFVQF--CANNPDDFLEAARHVAPYCDAVDLNLGCPQ 156
Query: 85 MVAKRGHYGAYLQDDWPLLTELGFKTRSHM-CGHSLMFCGNDSKNLT-EAAKLAEPHCDG 142
+A+RGHYGA+LQ+DW L+ +L K + + + F ++K T E AK+ G
Sbjct: 157 GIARRGHYGAFLQEDWDLIYKLINKLHTELDVPVTAKFRIQETKEKTLEYAKMI--LSAG 214
Query: 143 IDINIGCPQMVAKRGH--------YGAYLQDDWPLLTNLVYSPNMVHF-----VIAEPHC 189
I + ++GH Y YL+D+ P T + + N++++ + E
Sbjct: 215 ASIITLHGRTREQKGHNTGVADWSYIRYLRDNLPPETVIFANGNILNYDDLERCLEETGA 274
Query: 190 DG---NDINIGCPQMVAKRGHYGAYLQDDW 216
DG + N+ P + +K G+ ++ W
Sbjct: 275 DGVMSAEGNLSDPSVFSKPPPVGSEGREYW 304
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 33/37 (89%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +A+RGHYGA+LQ+DW L+ +L+
Sbjct: 143 PYCDAVDLNLGCPQGIARRGHYGAFLQEDWDLIYKLI 179
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 31/36 (86%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +A+RGHYGA+LQ+DW L+ +L
Sbjct: 143 PYCDAVDLNLGCPQGIARRGHYGAFLQEDWDLIYKL 178
>gi|258578427|ref|XP_002543395.1| tRNA-dihydrouridine synthase 1 [Uncinocarpus reesii 1704]
gi|237903661|gb|EEP78062.1| tRNA-dihydrouridine synthase 1 [Uncinocarpus reesii 1704]
Length = 514
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 44/58 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC ND L AA+L +P+CD +D+N+GCPQ +AK+GHYGA+LQ+D L+ L+++
Sbjct: 95 VQFCANDPDELLAAARLVQPYCDAVDLNLGCPQGIAKKGHYGAFLQEDPELIYKLIHT 152
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 33/38 (86%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+P+CD +D+N+GCPQ +AK+GHYGA+LQ+D L+ +L+
Sbjct: 113 QPYCDAVDLNLGCPQGIAKKGHYGAFLQEDPELIYKLI 150
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 33/39 (84%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ +P+CD +D+N+GCPQ +AK+GHYGA+LQ+D L+ +L
Sbjct: 111 LVQPYCDAVDLNLGCPQGIAKKGHYGAFLQEDPELIYKL 149
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 32/39 (82%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ +P+CD D+N+GCPQ +AK+GHYGA+LQ+D L+ +L
Sbjct: 111 LVQPYCDAVDLNLGCPQGIAKKGHYGAFLQEDPELIYKL 149
>gi|452985769|gb|EME85525.1| hypothetical protein MYCFIDRAFT_130789 [Pseudocercospora fijiensis
CIRAD86]
Length = 528
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 46/63 (73%), Gaps = 3/63 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA++ +P+CD ID+N+GCPQ +AKRG YGA+LQ++W L+ L+ N
Sbjct: 111 VQFCANDPEAFLKAARVVQPYCDAIDLNLGCPQGIAKRGQYGAFLQENWDLIYKLI---N 167
Query: 179 MVH 181
+H
Sbjct: 168 TLH 170
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 35/45 (77%)
Query: 62 FMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
F+ + +P+CD ID+N+GCPQ +AKRG YGA+LQ++W L+ +L
Sbjct: 121 FLKAARVVQPYCDAIDLNLGCPQGIAKRGQYGAFLQENWDLIYKL 165
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 33/39 (84%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+P+CD ID+N+GCPQ +AKRG YGA+LQ++W L+ +L+
Sbjct: 128 VQPYCDAIDLNLGCPQGIAKRGQYGAFLQENWDLIYKLI 166
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 19/138 (13%)
Query: 100 WPLLTE--LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRG 157
W +LT L R+ + +S M +K + K H + + + P+ A
Sbjct: 32 WRMLTRSFLPPDLRTSILAYSPML---HAKLFADGPKYRAAHFEPLKPPLAMPE-PADSE 87
Query: 158 HYGAYLQDDWPLLTNLVY-SPNMVHF------------VIAEPHCDGNDINIGCPQMVAK 204
H + +DD L N + P V F + +P+CD D+N+GCPQ +AK
Sbjct: 88 HQKTFKEDDMYLDGNPKFDRPLFVQFCANDPEAFLKAARVVQPYCDAIDLNLGCPQGIAK 147
Query: 205 RGHYGAYLQDDWPLLTEL 222
RG YGA+LQ++W L+ +L
Sbjct: 148 RGQYGAFLQENWDLIYKL 165
>gi|213401397|ref|XP_002171471.1| tRNA-dihydrouridine synthase [Schizosaccharomyces japonicus yFS275]
gi|211999518|gb|EEB05178.1| tRNA-dihydrouridine synthase [Schizosaccharomyces japonicus yFS275]
Length = 403
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 45/56 (80%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FCGN+ + + +AAKLAEP+C +D+N+GCPQ +A++G YG+++QD+W L+ ++
Sbjct: 80 VQFCGNEVETMLQAAKLAEPYCVAVDLNLGCPQGIARKGKYGSFMQDNWELIEAII 135
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 35/48 (72%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMC 115
+AEP+C +D+N+GCPQ +A++G YG+++QD+W L+ + K + +
Sbjct: 96 LAEPYCVAVDLNLGCPQGIARKGKYGSFMQDNWELIEAIISKLHAELS 143
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 31/38 (81%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
EP+C +D+N+GCPQ +A++G YG+++QD+W L+ ++
Sbjct: 98 EPYCVAVDLNLGCPQGIARKGKYGSFMQDNWELIEAII 135
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 30/36 (83%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLL 219
+AEP+C D+N+GCPQ +A++G YG+++QD+W L+
Sbjct: 96 LAEPYCVAVDLNLGCPQGIARKGKYGSFMQDNWELI 131
>gi|365759171|gb|EHN00977.1| Dus1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 423
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 44/58 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC ND ++L AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W L+ NL+ +
Sbjct: 91 VQFCANDPEHLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLIST 148
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 37 YLQDDWPLL------TELVVHFSWVSKNGPL-FMGPLFIAEPHCDGIDINIGCPQMVAKR 89
Y +D+W L LVV F N P + + E CD +D+N+GCPQ +AK+
Sbjct: 72 YREDNWSPLDGSDGDRPLVVQFC---ANDPEHLLAAAKLVEDKCDAVDLNLGCPQGIAKK 128
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYG++L ++W L+ L
Sbjct: 129 GHYGSFLMEEWDLIHNL 145
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +AK+GHYG++L ++W L+ L+
Sbjct: 108 VEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLI 146
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E CD D+N+GCPQ +AK+GHYG++L ++W L+ L
Sbjct: 107 LVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNL 145
>gi|255585121|ref|XP_002533266.1| tRNA-dihydrouridine synthase, putative [Ricinus communis]
gi|223526922|gb|EEF29128.1| tRNA-dihydrouridine synthase, putative [Ricinus communis]
Length = 426
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 43/56 (76%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L EAA+ EP+CD +DIN+GCPQ +A+RG+YGA+L D+ PL+ +LV
Sbjct: 150 VQFCANDPDILLEAARKVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 205
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 33/40 (82%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ EP+CD +DIN+GCPQ +A+RG+YGA+L D+ PL+ LV
Sbjct: 166 KVEPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLV 205
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 32/40 (80%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFK 109
EP+CD +DIN+GCPQ +A+RG+YGA+L D+ PL+ L K
Sbjct: 168 EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEK 207
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL-GKMAMLVGI 231
EP+CD DIN+GCPQ +A+RG+YGA+L D+ PL+ L K+A+ + +
Sbjct: 168 EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNV 214
>gi|384499529|gb|EIE90020.1| hypothetical protein RO3G_14731 [Rhizopus delemar RA 99-880]
Length = 392
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 7/95 (7%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L +AA+ E CD +D+N+GCPQ +AKRG YG++LQD+W L+ +V +
Sbjct: 78 VQFCANDPDILLKAARFVENDCDAVDLNLGCPQNIAKRGRYGSFLQDEWELIEKMV---S 134
Query: 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQ 213
+H +A P + I C V K Y ++
Sbjct: 135 TLHRELAIPVT----VKIRCFPTVEKTIEYAKMIE 165
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 39 QDDWPLLTELVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 97
++D PL+ + N P + + E CD +D+N+GCPQ +AKRG YG++LQ
Sbjct: 71 KEDRPLIVQFCA-------NDPDILLKAARFVENDCDAVDLNLGCPQNIAKRGRYGSFLQ 123
Query: 98 DDWPLLTEL 106
D+W L+ ++
Sbjct: 124 DEWELIEKM 132
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 31/39 (79%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +AKRG YG++LQD+W L+ ++V
Sbjct: 95 VENDCDAVDLNLGCPQNIAKRGRYGSFLQDEWELIEKMV 133
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 14/93 (15%)
Query: 142 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPH------------C 189
G D+ + P A+ G +DD TN P +V F +P C
Sbjct: 42 GADVCV-TPMFHARLFSEGQKYRDDQ-FTTNKEDRPLIVQFCANDPDILLKAARFVENDC 99
Query: 190 DGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
D D+N+GCPQ +AKRG YG++LQD+W L+ ++
Sbjct: 100 DAVDLNLGCPQNIAKRGRYGSFLQDEWELIEKM 132
>gi|145349324|ref|XP_001419086.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579317|gb|ABO97379.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 307
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 39/54 (72%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
FC ND + L AA + P+CDG+DIN GCPQ +AKRG+YGA+L DDW + L+
Sbjct: 77 FCANDPEILLRAATMIAPYCDGVDINFGCPQRIAKRGNYGAFLMDDWKTVEALI 130
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 30/37 (81%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CDG+DIN GCPQ +AKRG+YGA+L DDW + L+
Sbjct: 94 PYCDGVDINFGCPQRIAKRGNYGAFLMDDWKTVEALI 130
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 6/66 (9%)
Query: 41 DWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 100
D PLL + + + + + + + P+CDG+DIN GCPQ +AKRG+YGA+L DDW
Sbjct: 70 DRPLLAQ------FCANDPEILLRAATMIAPYCDGVDINFGCPQRIAKRGNYGAFLMDDW 123
Query: 101 PLLTEL 106
+ L
Sbjct: 124 KTVEAL 129
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 28/36 (77%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CDG DIN GCPQ +AKRG+YGA+L DDW + L
Sbjct: 94 PYCDGVDINFGCPQRIAKRGNYGAFLMDDWKTVEAL 129
>gi|330919514|ref|XP_003298646.1| hypothetical protein PTT_09419 [Pyrenophora teres f. teres 0-1]
gi|311328059|gb|EFQ93260.1| hypothetical protein PTT_09419 [Pyrenophora teres f. teres 0-1]
Length = 578
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 43/57 (75%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
++ FC ND ++ AAK P CD +D+N+GCPQ +AKRG YGA+LQ+DW L+++++
Sbjct: 129 TVQFCSNDPEDFLRAAKHVAPFCDAVDLNLGCPQGIAKRGKYGAFLQEDWGLISSMI 185
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 31/37 (83%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P CD +D+N+GCPQ +AKRG YGA+LQ+DW L++ ++
Sbjct: 149 PFCDAVDLNLGCPQGIAKRGKYGAFLQEDWGLISSMI 185
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 30/36 (83%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P CD +D+N+GCPQ +AKRG YGA+LQ+DW L++ +
Sbjct: 149 PFCDAVDLNLGCPQGIAKRGKYGAFLQEDWGLISSM 184
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 29/36 (80%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P CD D+N+GCPQ +AKRG YGA+LQ+DW L++ +
Sbjct: 149 PFCDAVDLNLGCPQGIAKRGKYGAFLQEDWGLISSM 184
>gi|115397477|ref|XP_001214330.1| tRNA-dihydrouridine synthase 1 [Aspergillus terreus NIH2624]
gi|114192521|gb|EAU34221.1| tRNA-dihydrouridine synthase 1 [Aspergillus terreus NIH2624]
Length = 536
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 42/56 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC N+ + EAA+ P+CD +D+N+GCPQ +AKRGHYG++LQ+DW L+ L+
Sbjct: 121 VQFCANNPDDFLEAAQHVAPYCDAVDLNLGCPQGIAKRGHYGSFLQEDWDLIYKLI 176
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 33/37 (89%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +AKRGHYG++LQ+DW L+ +L+
Sbjct: 140 PYCDAVDLNLGCPQGIAKRGHYGSFLQEDWDLIYKLI 176
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 32/36 (88%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P+CD +D+N+GCPQ +AKRGHYG++LQ+DW L+ +L
Sbjct: 140 PYCDAVDLNLGCPQGIAKRGHYGSFLQEDWDLIYKL 175
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 31/36 (86%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +AKRGHYG++LQ+DW L+ +L
Sbjct: 140 PYCDAVDLNLGCPQGIAKRGHYGSFLQEDWDLIYKL 175
>gi|405954546|gb|EKC21957.1| tRNA-dihydrouridine synthase 1-like protein, partial [Crassostrea
gigas]
Length = 183
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 30/115 (26%)
Query: 60 PLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSL 119
P+F +F+ +P+ + CP DD PL+ +
Sbjct: 46 PMFHSSVFVRDPNYRKEAMQ-TCP--------------DDRPLIVQ-------------- 76
Query: 120 MFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
FC ND +AA+ E CD +D+N+GCPQ +AKRGHYGA+L+D+W LL +V
Sbjct: 77 -FCANDPDTFLKAAQYVENICDAVDLNLGCPQTIAKRGHYGAFLEDEWDLLKKMV 130
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 8/68 (11%)
Query: 40 DDWPLLTELVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
DD PL+ + N P F+ E CD +D+N+GCPQ +AKRGHYGA+L+D
Sbjct: 69 DDRPLIVQFCA-------NDPDTFLKAAQYVENICDAVDLNLGCPQTIAKRGHYGAFLED 121
Query: 99 DWPLLTEL 106
+W LL ++
Sbjct: 122 EWDLLKKM 129
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 32/39 (82%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +AKRGHYGA+L+D+W LL ++V
Sbjct: 92 VENICDAVDLNLGCPQTIAKRGHYGAFLEDEWDLLKKMV 130
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 165 DDWPLLTNLVYSPNMVHFVIA---EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTE 221
DD PL+ + A E CD D+N+GCPQ +AKRGHYGA+L+D+W LL +
Sbjct: 69 DDRPLIVQFCANDPDTFLKAAQYVENICDAVDLNLGCPQTIAKRGHYGAFLEDEWDLLKK 128
Query: 222 L 222
+
Sbjct: 129 M 129
>gi|255714418|ref|XP_002553491.1| KLTH0D18084p [Lachancea thermotolerans]
gi|238934871|emb|CAR23053.1| KLTH0D18084p [Lachancea thermotolerans CBS 6340]
Length = 430
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 42/58 (72%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC NDS L AAKL E CD +D+N+GCPQ +AK+GHYG++L +DW L+ L+ +
Sbjct: 93 VQFCANDSDYLLAAAKLIEDKCDAVDLNLGCPQGIAKKGHYGSFLMEDWDLIHKLIRT 150
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
LVV F + + + + E CD +D+N+GCPQ +AK+GHYG++L +DW L+ +L
Sbjct: 91 LVVQF--CANDSDYLLAAAKLIEDKCDAVDLNLGCPQGIAKKGHYGSFLMEDWDLIHKL 147
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 31/38 (81%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +AK+GHYG++L +DW L+ +L+
Sbjct: 111 EDKCDAVDLNLGCPQGIAKKGHYGSFLMEDWDLIHKLI 148
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E CD D+N+GCPQ +AK+GHYG++L +DW L+ +L
Sbjct: 109 LIEDKCDAVDLNLGCPQGIAKKGHYGSFLMEDWDLIHKL 147
>gi|116192117|ref|XP_001221871.1| hypothetical protein CHGG_05776 [Chaetomium globosum CBS 148.51]
gi|88181689|gb|EAQ89157.1| hypothetical protein CHGG_05776 [Chaetomium globosum CBS 148.51]
Length = 464
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 43/56 (76%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND + L AAK+A P+CD +D+N+GCPQ +AK+GHYG++LQ+D L+ L+
Sbjct: 114 VQFCANDPQALLNAAKIAAPYCDAVDLNLGCPQGIAKKGHYGSFLQEDQDLIHQLI 169
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 33/39 (84%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
IA P+CD +D+N+GCPQ +AK+GHYG++LQ+D L+ +L
Sbjct: 130 IAAPYCDAVDLNLGCPQGIAKKGHYGSFLQEDQDLIHQL 168
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 34/42 (80%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225
IA P+CD D+N+GCPQ +AK+GHYG++LQ+D L+ +L K+
Sbjct: 130 IAAPYCDAVDLNLGCPQGIAKKGHYGSFLQEDQDLIHQLIKI 171
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 32/37 (86%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +AK+GHYG++LQ+D L+ +L+
Sbjct: 133 PYCDAVDLNLGCPQGIAKKGHYGSFLQEDQDLIHQLI 169
>gi|356563594|ref|XP_003550046.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Glycine max]
Length = 377
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 65 PLFIAEPHCDGIDINIGCPQMVAKRGHYGAY---LQDDWPLLTELGFKTRSHMCGHS--- 118
P FI P D ++ + K G GAY L TE C
Sbjct: 46 PRFIVAPMVDNSELPFR--MLCRKYGAQGAYTPMLHSRIFTETEKYRNEEFTTCKEDRPL 103
Query: 119 -LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L AA+ EP CD +DIN+GCPQ +AKRG+YGA+L D+ PL+ +LV
Sbjct: 104 FVQFCANDPDVLLAAARKVEPFCDYVDINLGCPQRIAKRGYYGAFLMDNLPLVKSLV 160
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 32/40 (80%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ EP CD +DIN+GCPQ +AKRG+YGA+L D+ PL+ LV
Sbjct: 121 KVEPFCDYVDINLGCPQRIAKRGYYGAFLMDNLPLVKSLV 160
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 164 QDDWPLLTNLVYSPNMVHFVIA---EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLT 220
++D PL + V A EP CD DIN+GCPQ +AKRG+YGA+L D+ PL+
Sbjct: 98 KEDRPLFVQFCANDPDVLLAAARKVEPFCDYVDINLGCPQRIAKRGYYGAFLMDNLPLVK 157
Query: 221 EL 222
L
Sbjct: 158 SL 159
>gi|58258725|ref|XP_566775.1| tRNA dihydrouridine synthase [Cryptococcus neoformans var.
neoformans JEC21]
gi|134106771|ref|XP_777927.1| hypothetical protein CNBA3960 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260627|gb|EAL23280.1| hypothetical protein CNBA3960 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57222912|gb|AAW40956.1| tRNA dihydrouridine synthase, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 610
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 40/58 (68%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC ND L AAK E CD +DIN GCPQ +AKRGHYG++LQD+W L+ L+ +
Sbjct: 154 VQFCANDPDILLAAAKKVEHRCDAVDINFGCPQGIAKRGHYGSFLQDEWELIHKLIST 211
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 32/40 (80%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ E CD +DIN GCPQ +AKRGHYG++LQD+W L+ +L+
Sbjct: 170 KVEHRCDAVDINFGCPQGIAKRGHYGSFLQDEWELIHKLI 209
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + + + + E CD +DIN GCPQ +AKRGHYG++LQD+W L+ +L
Sbjct: 152 LIVQF--CANDPDILLAAAKKVEHRCDAVDINFGCPQGIAKRGHYGSFLQDEWELIHKL 208
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 166 DWPLLTNLVYSPNMVHFVIA---EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
D PL+ + + A E CD DIN GCPQ +AKRGHYG++LQD+W L+ +L
Sbjct: 149 DRPLIVQFCANDPDILLAAAKKVEHRCDAVDINFGCPQGIAKRGHYGSFLQDEWELIHKL 208
>gi|405972534|gb|EKC37298.1| tRNA-dihydrouridine synthase 1-like protein [Crassostrea gigas]
Length = 485
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 30/115 (26%)
Query: 60 PLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSL 119
P+F +F+ +P+ + CP DD PL+ +
Sbjct: 61 PMFHSSVFVRDPNYRKEAMQT-CP--------------DDRPLIVQ-------------- 91
Query: 120 MFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
FC ND +AA+ E CD +D+N+GCPQ +AKRGHYGA+L+D+W LL +V
Sbjct: 92 -FCANDPDTFLKAAQYVEDICDAVDLNLGCPQTIAKRGHYGAFLEDEWDLLKKMV 145
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 8/68 (11%)
Query: 40 DDWPLLTELVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
DD PL+ + N P F+ E CD +D+N+GCPQ +AKRGHYGA+L+D
Sbjct: 84 DDRPLIVQFCA-------NDPDTFLKAAQYVEDICDAVDLNLGCPQTIAKRGHYGAFLED 136
Query: 99 DWPLLTEL 106
+W LL ++
Sbjct: 137 EWDLLKKM 144
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 31/36 (86%)
Query: 15 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
CD +D+N+GCPQ +AKRGHYGA+L+D+W LL ++V
Sbjct: 111 CDAVDLNLGCPQTIAKRGHYGAFLEDEWDLLKKMVA 146
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 165 DDWPLLTNLVYSPNMVHFVIA---EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTE 221
DD PL+ + A E CD D+N+GCPQ +AKRGHYGA+L+D+W LL +
Sbjct: 84 DDRPLIVQFCANDPDTFLKAAQYVEDICDAVDLNLGCPQTIAKRGHYGAFLEDEWDLLKK 143
Query: 222 L 222
+
Sbjct: 144 M 144
>gi|321249423|ref|XP_003191451.1| tRNA dihydrouridine synthase [Cryptococcus gattii WM276]
gi|317457918|gb|ADV19664.1| tRNA dihydrouridine synthase, putative [Cryptococcus gattii WM276]
Length = 623
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 40/58 (68%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC ND L AAK E CD +DIN GCPQ +AKRGHYG++LQD+W L+ L+ +
Sbjct: 158 VQFCANDPDILLAAAKKVEHRCDAVDINFGCPQGIAKRGHYGSFLQDEWELIHKLIST 215
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 32/40 (80%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ E CD +DIN GCPQ +AKRGHYG++LQD+W L+ +L+
Sbjct: 174 KVEHRCDAVDINFGCPQGIAKRGHYGSFLQDEWELIHKLI 213
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + + + + E CD +DIN GCPQ +AKRGHYG++LQD+W L+ +L
Sbjct: 156 LIVQF--CANDPDILLAAAKKVEHRCDAVDINFGCPQGIAKRGHYGSFLQDEWELIHKL 212
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 166 DWPLLTNLVYSPNMVHFVIA---EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
D PL+ + + A E CD DIN GCPQ +AKRGHYG++LQD+W L+ +L
Sbjct: 153 DRPLIVQFCANDPDILLAAAKKVEHRCDAVDINFGCPQGIAKRGHYGSFLQDEWELIHKL 212
>gi|168057686|ref|XP_001780844.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667700|gb|EDQ54323.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 401
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 41/56 (73%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC N+ L EAAKL + CD +DIN GCPQ +AKRG+YGA+L DD PL+ +LV
Sbjct: 103 IQFCANNPDTLLEAAKLVQDDCDYVDINFGCPQRIAKRGNYGAFLMDDLPLVRSLV 158
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 29/39 (74%)
Query: 15 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
CD +DIN GCPQ +AKRG+YGA+L DD PL+ LV S
Sbjct: 124 CDYVDINFGCPQRIAKRGNYGAFLMDDLPLVRSLVEKLS 162
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 15/91 (16%)
Query: 33 HYGAYLQDDWPLLTELVVHFSWVSKNGPLF-----------MGPLFIAEPHCDGIDINIG 81
H + QD L E FS ++ PLF + + + CD +DIN G
Sbjct: 77 HSRLFAQDAKYRLKE----FSTCPEDRPLFIQFCANNPDTLLEAAKLVQDDCDYVDINFG 132
Query: 82 CPQMVAKRGHYGAYLQDDWPLLTELGFKTRS 112
CPQ +AKRG+YGA+L DD PL+ L K S
Sbjct: 133 CPQRIAKRGNYGAFLMDDLPLVRSLVEKLSS 163
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ + CD DIN GCPQ +AKRG+YGA+L DD PL+ L
Sbjct: 119 LVQDDCDYVDINFGCPQRIAKRGNYGAFLMDDLPLVRSL 157
>gi|50547431|ref|XP_501185.1| YALI0B21516p [Yarrowia lipolytica]
gi|49647051|emb|CAG83438.1| YALI0B21516p [Yarrowia lipolytica CLIB122]
Length = 423
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L AAKL E CD +D+N+GCPQ +A++GHYG++L +DW L+ L+ N
Sbjct: 91 VQFCANDPDELLAAAKLVEDRCDAVDLNLGCPQGIARKGHYGSFLMEDWDLIHKLI---N 147
Query: 179 MVHFVIAEP 187
+H + P
Sbjct: 148 KLHLELKVP 156
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 31/38 (81%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +A++GHYG++L +DW L+ +L+
Sbjct: 109 EDRCDAVDLNLGCPQGIARKGHYGSFLMEDWDLIHKLI 146
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
LVV F + + + + E CD +D+N+GCPQ +A++GHYG++L +DW L+ +L
Sbjct: 89 LVVQF--CANDPDELLAAAKLVEDRCDAVDLNLGCPQGIARKGHYGSFLMEDWDLIHKL 145
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E CD D+N+GCPQ +A++GHYG++L +DW L+ +L
Sbjct: 107 LVEDRCDAVDLNLGCPQGIARKGHYGSFLMEDWDLIHKL 145
>gi|256088793|ref|XP_002580509.1| tRNA-dihydrouridine synthase [Schistosoma mansoni]
gi|238666091|emb|CAZ36748.1| tRNA-dihydrouridine synthase, putative [Schistosoma mansoni]
Length = 441
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 40/61 (65%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC N AKL +P CD +D+N+GCPQ +AKRGHYGA+LQD+W L ++ +
Sbjct: 69 VQFCANSPDTFVRCAKLVQPFCDAVDLNLGCPQGIAKRGHYGAFLQDEWNSLKEIISRAS 128
Query: 179 M 179
+
Sbjct: 129 L 129
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 37 YLQDDWPLLTELVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAY 95
+ +D PL+ + N P F+ + +P CD +D+N+GCPQ +AKRGHYGA+
Sbjct: 60 FASEDRPLIVQFCA-------NSPDTFVRCAKLVQPFCDAVDLNLGCPQGIAKRGHYGAF 112
Query: 96 LQDDWPLLTEL 106
LQD+W L E+
Sbjct: 113 LQDEWNSLKEI 123
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
+P CD +D+N+GCPQ +AKRGHYGA+LQD+W L E++ S
Sbjct: 86 VQPFCDAVDLNLGCPQGIAKRGHYGAFLQDEWNSLKEIISRAS 128
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 7/72 (9%)
Query: 162 YLQDDWPLLTNL-VYSPNMVHFV----IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDW 216
+ +D PL+ SP+ FV + +P CD D+N+GCPQ +AKRGHYGA+LQD+W
Sbjct: 60 FASEDRPLIVQFCANSPDT--FVRCAKLVQPFCDAVDLNLGCPQGIAKRGHYGAFLQDEW 117
Query: 217 PLLTELGKMAML 228
L E+ A L
Sbjct: 118 NSLKEIISRASL 129
>gi|170592763|ref|XP_001901134.1| PP3111 protein [Brugia malayi]
gi|158591201|gb|EDP29814.1| PP3111 protein, putative [Brugia malayi]
Length = 513
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L A +L E CDG+D+N+GCPQ++AKRGHYGAYLQ+D L+ ++
Sbjct: 119 VQFCANDPVILLNACQLVESFCDGVDLNLGCPQLIAKRGHYGAYLQEDLKLICEMI 174
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 8/75 (10%)
Query: 40 DDWPLLTELVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
DD PL+ + N P + + + E CDG+D+N+GCPQ++AKRGHYGAYLQ+
Sbjct: 113 DDRPLVVQFCA-------NDPVILLNACQLVESFCDGVDLNLGCPQLIAKRGHYGAYLQE 165
Query: 99 DWPLLTELGFKTRSH 113
D L+ E+ SH
Sbjct: 166 DLKLICEMITLLHSH 180
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 33/40 (82%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
E CDG+D+N+GCPQ++AKRGHYGAYLQ+D L+ E++
Sbjct: 136 VESFCDGVDLNLGCPQLIAKRGHYGAYLQEDLKLICEMIT 175
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 165 DDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTE 221
DD PL+ + ++ + E CDG D+N+GCPQ++AKRGHYGAYLQ+D L+ E
Sbjct: 113 DDRPLVVQFCANDPVILLNACQLVESFCDGVDLNLGCPQLIAKRGHYGAYLQEDLKLICE 172
Query: 222 L 222
+
Sbjct: 173 M 173
>gi|313218109|emb|CBY41424.1| unnamed protein product [Oikopleura dioica]
Length = 283
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + AAK+ E CD +D+N+GCPQM+AKRGHYGA++ +DW + ++
Sbjct: 107 VQFCANDINAFSTAAKMVEDRCDAVDLNLGCPQMIAKRGHYGAHMMEDWSNIRKMIEEAR 166
Query: 179 MVHFV 183
V V
Sbjct: 167 KVAKV 171
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK 57
E CD +D+N+GCPQM+AKRGHYGA++ +DW + +++ V+K
Sbjct: 124 VEDRCDAVDLNLGCPQMIAKRGHYGAHMMEDWSNIRKMIEEARKVAK 170
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 16/74 (21%)
Query: 55 VSKNGPLFMGPLFI----------------AEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
+ + P F PLF+ E CD +D+N+GCPQM+AKRGHYGA++ +
Sbjct: 94 LEQGSPEFDRPLFVQFCANDINAFSTAAKMVEDRCDAVDLNLGCPQMIAKRGHYGAHMME 153
Query: 99 DWPLLTELGFKTRS 112
DW + ++ + R
Sbjct: 154 DWSNIRKMIEEARK 167
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGILDNTGS 237
+ E CD D+N+GCPQM+AKRGHYGA++ +DW + ++ + A V + T
Sbjct: 123 MVEDRCDAVDLNLGCPQMIAKRGHYGAHMMEDWSNIRKMIEEARKVAKVRITAK 176
>gi|313237639|emb|CBY12783.1| unnamed protein product [Oikopleura dioica]
Length = 460
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 42/65 (64%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + AAK+ E CD +D+N+GCPQM+AKRGHYGA++ +DW + ++
Sbjct: 107 VQFCANDINAFSTAAKMVEDRCDAVDLNLGCPQMIAKRGHYGAHMMEDWSNIRKMIEEAR 166
Query: 179 MVHFV 183
V V
Sbjct: 167 KVAKV 171
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK 57
E CD +D+N+GCPQM+AKRGHYGA++ +DW + +++ V+K
Sbjct: 124 VEDRCDAVDLNLGCPQMIAKRGHYGAHMMEDWSNIRKMIEEARKVAK 170
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 16/74 (21%)
Query: 55 VSKNGPLFMGPLFI----------------AEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
+ + P F PLF+ E CD +D+N+GCPQM+AKRGHYGA++ +
Sbjct: 94 LEQGSPEFDRPLFVQFCANDINAFSTAAKMVEDRCDAVDLNLGCPQMIAKRGHYGAHMME 153
Query: 99 DWPLLTELGFKTRS 112
DW + ++ + R
Sbjct: 154 DWSNIRKMIEEARK 167
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGILDNTGS 237
+ E CD D+N+GCPQM+AKRGHYGA++ +DW + ++ + A V + T
Sbjct: 123 MVEDRCDAVDLNLGCPQMIAKRGHYGAHMMEDWSNIRKMIEEARKVAKVRITAK 176
>gi|401624451|gb|EJS42508.1| dus1p [Saccharomyces arboricola H-6]
Length = 423
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 42/56 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND + L AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W L+ NL+
Sbjct: 91 VQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWELVHNLI 146
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 10/77 (12%)
Query: 37 YLQDDWPLL------TELVVHFSWVSKNGPLFM-GPLFIAEPHCDGIDINIGCPQMVAKR 89
Y +D+W L LVV F N P ++ + E CD +D+N+GCPQ +AK+
Sbjct: 72 YREDNWSSLDGSDLDRPLVVQFC---ANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKK 128
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYG++L ++W L+ L
Sbjct: 129 GHYGSFLMEEWELVHNL 145
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +AK+GHYG++L ++W L+ L+
Sbjct: 108 VEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWELVHNLI 146
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E CD D+N+GCPQ +AK+GHYG++L ++W L+ L
Sbjct: 107 LVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWELVHNL 145
>gi|296419375|ref|XP_002839286.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635409|emb|CAZ83477.1| unnamed protein product [Tuber melanosporum]
Length = 483
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 43/56 (76%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC N ++L AA+ PHCDG+D+N+GCPQ +A++G YGA+LQ+DW L+ +LV
Sbjct: 90 VQFCSNTPEDLFSAAQHVAPHCDGVDLNLGCPQGIARKGKYGAFLQEDWGLIRSLV 145
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 32/37 (86%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
PHCDG+D+N+GCPQ +A++G YGA+LQ+DW L+ LV
Sbjct: 109 PHCDGVDLNLGCPQGIARKGKYGAFLQEDWGLIRSLV 145
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Query: 61 LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFK 109
LF +A PHCDG+D+N+GCPQ +A++G YGA+LQ+DW L+ L K
Sbjct: 100 LFSAAQHVA-PHCDGVDLNLGCPQGIARKGKYGAFLQEDWGLIRSLVSK 147
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 166 DWPLLTNLVYSPNMVHFVIAE---PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
D PL + F A+ PHCDG D+N+GCPQ +A++G YGA+LQ+DW L+ L
Sbjct: 85 DRPLFVQFCSNTPEDLFSAAQHVAPHCDGVDLNLGCPQGIARKGKYGAFLQEDWGLIRSL 144
>gi|449546042|gb|EMD37012.1| hypothetical protein CERSUDRAFT_114910 [Ceriporiopsis subvermispora
B]
Length = 479
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ CG+D + + AK E HCD IDIN+GCPQ VA+RGHYG++LQD+W L+ L+ N
Sbjct: 94 VQLCGHDPEKMLATAKCLEAHCDAIDINLGCPQDVARRGHYGSFLQDEWDLIYELI---N 150
Query: 179 MVH 181
+H
Sbjct: 151 TLH 153
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 33/38 (86%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E HCD IDIN+GCPQ VA+RGHYG++LQD+W L+ EL+
Sbjct: 112 EAHCDAIDINLGCPQDVARRGHYGSFLQDEWDLIYELI 149
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 32/37 (86%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
E HCD IDIN+GCPQ VA+RGHYG++LQD+W L+ EL
Sbjct: 112 EAHCDAIDINLGCPQDVARRGHYGSFLQDEWDLIYEL 148
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 31/37 (83%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
E HCD DIN+GCPQ VA+RGHYG++LQD+W L+ EL
Sbjct: 112 EAHCDAIDINLGCPQDVARRGHYGSFLQDEWDLIYEL 148
>gi|115469926|ref|NP_001058562.1| Os06g0712900 [Oryza sativa Japonica Group]
gi|113596602|dbj|BAF20476.1| Os06g0712900 [Oryza sativa Japonica Group]
Length = 421
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 43/56 (76%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L +AAK+ EP+CD +DIN GCPQ +A+RG+YGA+L ++ PL+ +LV
Sbjct: 146 VQFCANDPDILLQAAKIVEPYCDYVDINFGCPQRIARRGYYGAFLMNNLPLVKSLV 201
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
EP+CD +DIN GCPQ +A+RG+YGA+L ++ PL+ LV + S
Sbjct: 163 VEPYCDYVDINFGCPQRIARRGYYGAFLMNNLPLVKSLVQNLS 205
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 39 QDDWPLLTELVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 97
++D PL + N P + + I EP+CD +DIN GCPQ +A+RG+YGA+L
Sbjct: 139 KEDRPLFVQFCA-------NDPDILLQAAKIVEPYCDYVDINFGCPQRIARRGYYGAFLM 191
Query: 98 DDWPLLTEL 106
++ PL+ L
Sbjct: 192 NNLPLVKSL 200
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
I EP+CD DIN GCPQ +A+RG+YGA+L ++ PL+ L
Sbjct: 162 IVEPYCDYVDINFGCPQRIARRGYYGAFLMNNLPLVKSL 200
>gi|344230040|gb|EGV61925.1| Dus-domain-containing protein [Candida tenuis ATCC 10573]
Length = 414
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 42/56 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND + L +AAKL E CD +D+N+GCPQ +A++G+YGA+L DDW L+ L+
Sbjct: 76 VQFCANDPEYLLQAAKLVENKCDAVDLNLGCPQGIARKGNYGAFLMDDWELVRKLI 131
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 32/42 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHF 52
E CD +D+N+GCPQ +A++G+YGA+L DDW L+ +L+ +
Sbjct: 93 VENKCDAVDLNLGCPQGIARKGNYGAFLMDDWELVRKLITNL 134
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 31/39 (79%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ E CD +D+N+GCPQ +A++G+YGA+L DDW L+ +L
Sbjct: 92 LVENKCDAVDLNLGCPQGIARKGNYGAFLMDDWELVRKL 130
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E CD D+N+GCPQ +A++G+YGA+L DDW L+ +L
Sbjct: 92 LVENKCDAVDLNLGCPQGIARKGNYGAFLMDDWELVRKL 130
>gi|443895561|dbj|GAC72907.1| tRNA-dihydrouridine synthase [Pseudozyma antarctica T-34]
Length = 518
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L +AA++ + CD +D+N+GCPQ +A+RGHYG+YL +DW L+ L+ N
Sbjct: 137 VQFCSNDPATLLKAAEVVQDRCDAVDLNLGCPQHIARRGHYGSYLMEDWQLIFALI---N 193
Query: 179 MVHFVIAEP 187
++H + P
Sbjct: 194 ILHLNLRIP 202
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 35 GAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGA 94
GA D PL + + S + + + + CD +D+N+GCPQ +A+RGHYG+
Sbjct: 126 GASSDTDRPLFVQ------FCSNDPATLLKAAEVVQDRCDAVDLNLGCPQHIARRGHYGS 179
Query: 95 YLQDDWPLLTEL 106
YL +DW L+ L
Sbjct: 180 YLMEDWQLIFAL 191
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 29/36 (80%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
CD +D+N+GCPQ +A+RGHYG+YL +DW L+ L+
Sbjct: 157 RCDAVDLNLGCPQHIARRGHYGSYLMEDWQLIFALI 192
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 10/129 (7%)
Query: 104 TELGFKTRSHMCGHSLMFCG--NDSKNLTEAAKLAEPHCDGIDINI-----GCPQMVAKR 156
+EL ++ S G L++ N + E +K + ++ N G + +
Sbjct: 63 SELAWRVLSRRYGADLVYTPMINAKLFVDENSKKKKVKYQEVNFNREFGEEGGASIASLL 122
Query: 157 GHYGAYLQDDWPLLTNLVYSPNMVHFVIAE---PHCDGNDINIGCPQMVAKRGHYGAYLQ 213
GA D PL + AE CD D+N+GCPQ +A+RGHYG+YL
Sbjct: 123 SEEGASSDTDRPLFVQFCSNDPATLLKAAEVVQDRCDAVDLNLGCPQHIARRGHYGSYLM 182
Query: 214 DDWPLLTEL 222
+DW L+ L
Sbjct: 183 EDWQLIFAL 191
>gi|261330856|emb|CBH13841.1| tRNA-dihydrouridine synthase 1, putative [Trypanosoma brucei
gambiense DAL972]
Length = 520
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 43/56 (76%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
FCGND + + AA+ E +C+ +D NIGCPQ +A+RGHYG++L +DW LL N++++
Sbjct: 160 FCGNDPETILAAARHVEDYCEAVDFNIGCPQGIARRGHYGSFLMEDWELLHNILHA 215
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 30/38 (78%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E +C+ +D NIGCPQ +A+RGHYG++L +DW LL ++
Sbjct: 176 EDYCEAVDFNIGCPQGIARRGHYGSFLMEDWELLHNIL 213
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 28/34 (82%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 103
E +C+ +D NIGCPQ +A+RGHYG++L +DW LL
Sbjct: 176 EDYCEAVDFNIGCPQGIARRGHYGSFLMEDWELL 209
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLL 219
E +C+ D NIGCPQ +A+RGHYG++L +DW LL
Sbjct: 176 EDYCEAVDFNIGCPQGIARRGHYGSFLMEDWELL 209
>gi|6323560|ref|NP_013631.1| Dus1p [Saccharomyces cerevisiae S288c]
gi|1730621|sp|P53759.1|DUS1_YEAST RecName: Full=tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 1
gi|587531|emb|CAA86498.1| unnamed protein product [Saccharomyces cerevisiae]
gi|285813922|tpg|DAA09817.1| TPA: Dus1p [Saccharomyces cerevisiae S288c]
Length = 423
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + L AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W L+ NL+ N
Sbjct: 91 VQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLI---N 147
Query: 179 MVHFVIAEP 187
+H + P
Sbjct: 148 TLHKNLKVP 156
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 10/77 (12%)
Query: 37 YLQDDWPLL------TELVVHFSWVSKNGPLFM-GPLFIAEPHCDGIDINIGCPQMVAKR 89
Y +D+W L LVV F N P ++ + E CD +D+N+GCPQ +AK+
Sbjct: 72 YREDNWSSLDGSSVDRPLVVQFC---ANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKK 128
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYG++L ++W L+ L
Sbjct: 129 GHYGSFLMEEWDLIHNL 145
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +AK+GHYG++L ++W L+ L+
Sbjct: 108 VEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLI 146
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 13/74 (17%)
Query: 162 YLQDDWPLLT-NLVYSPNMVHFVIAEPH------------CDGNDINIGCPQMVAKRGHY 208
Y +D+W L + V P +V F +P CD D+N+GCPQ +AK+GHY
Sbjct: 72 YREDNWSSLDGSSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHY 131
Query: 209 GAYLQDDWPLLTEL 222
G++L ++W L+ L
Sbjct: 132 GSFLMEEWDLIHNL 145
>gi|323347278|gb|EGA81552.1| Dus1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 301
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 42/56 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND + L AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W L+ NL+
Sbjct: 91 VQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLI 146
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 10/77 (12%)
Query: 37 YLQDDWPLL------TELVVHFSWVSKNGPLFM-GPLFIAEPHCDGIDINIGCPQMVAKR 89
Y +D+W L LVV F N P ++ + E CD +D+N+GCPQ +AK+
Sbjct: 72 YREDNWSSLDGSSVDRPLVVQFC---ANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKK 128
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYG++L ++W L+ L
Sbjct: 129 GHYGSFLMEEWDLIHNL 145
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +AK+GHYG++L ++W L+ L+
Sbjct: 108 VEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLI 146
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 13/74 (17%)
Query: 162 YLQDDWPLLT-NLVYSPNMVHFVIAEPH------------CDGNDINIGCPQMVAKRGHY 208
Y +D+W L + V P +V F +P CD D+N+GCPQ +AK+GHY
Sbjct: 72 YREDNWSSLDGSSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHY 131
Query: 209 GAYLQDDWPLLTEL 222
G++L ++W L+ L
Sbjct: 132 GSFLMEEWDLIHNL 145
>gi|396466196|ref|XP_003837636.1| hypothetical protein LEMA_P123440.1 [Leptosphaeria maculans JN3]
gi|312214198|emb|CBX94192.1| hypothetical protein LEMA_P123440.1 [Leptosphaeria maculans JN3]
Length = 623
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 41/57 (71%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
++ FC ND +L AAK P CD +D+N+GCPQ +AKRG YGA+LQ+DW L+ ++
Sbjct: 129 TVQFCSNDPDDLLAAAKHVAPFCDAVDLNLGCPQGIAKRGKYGAFLQEDWDLIARMI 185
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P CD +D+N+GCPQ +AKRG YGA+LQ+DW L+ ++
Sbjct: 149 PFCDAVDLNLGCPQGIAKRGKYGAFLQEDWDLIARMI 185
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 29/36 (80%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P CD +D+N+GCPQ +AKRG YGA+LQ+DW L+ +
Sbjct: 149 PFCDAVDLNLGCPQGIAKRGKYGAFLQEDWDLIARM 184
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P CD D+N+GCPQ +AKRG YGA+LQ+DW L+ +
Sbjct: 149 PFCDAVDLNLGCPQGIAKRGKYGAFLQEDWDLIARM 184
>gi|226498556|ref|NP_001142214.1| uncharacterized protein LOC100274382 [Zea mays]
gi|194707636|gb|ACF87902.1| unknown [Zea mays]
gi|413934916|gb|AFW69467.1| hypothetical protein ZEAMMB73_005938 [Zea mays]
Length = 420
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 42/56 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L +AAK EP+CD +DIN GCPQ +A+RG+YGA+L D+ PL+ +LV
Sbjct: 148 VQFCANDPDILLQAAKKVEPYCDYVDINFGCPQRIARRGNYGAFLMDNLPLVKSLV 203
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
+ EP+CD +DIN GCPQ +A+RG+YGA+L D+ PL+ LV + +
Sbjct: 164 KVEPYCDYVDINFGCPQRIARRGNYGAFLMDNLPLVKSLVQNLA 207
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 30/37 (81%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
EP+CD +DIN GCPQ +A+RG+YGA+L D+ PL+ L
Sbjct: 166 EPYCDYVDINFGCPQRIARRGNYGAFLMDNLPLVKSL 202
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 29/37 (78%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
EP+CD DIN GCPQ +A+RG+YGA+L D+ PL+ L
Sbjct: 166 EPYCDYVDINFGCPQRIARRGNYGAFLMDNLPLVKSL 202
>gi|392297501|gb|EIW08601.1| Dus1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 423
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + L AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W L+ NL+ N
Sbjct: 91 VQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLI---N 147
Query: 179 MVHFVIAEP 187
+H + P
Sbjct: 148 TLHKNLKVP 156
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 10/77 (12%)
Query: 37 YLQDDWPLL------TELVVHFSWVSKNGPLFM-GPLFIAEPHCDGIDINIGCPQMVAKR 89
Y +D+W L LVV F N P ++ + E CD +D+N+GCPQ +AK+
Sbjct: 72 YREDNWSSLDGSSVDRPLVVQFC---ANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKK 128
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYG++L ++W L+ L
Sbjct: 129 GHYGSFLMEEWDLIHNL 145
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +AK+GHYG++L ++W L+ L+
Sbjct: 108 VEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLI 146
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 13/74 (17%)
Query: 162 YLQDDWPLLT-NLVYSPNMVHFVIAEPH------------CDGNDINIGCPQMVAKRGHY 208
Y +D+W L + V P +V F +P CD D+N+GCPQ +AK+GHY
Sbjct: 72 YREDNWSSLDGSSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHY 131
Query: 209 GAYLQDDWPLLTEL 222
G++L ++W L+ L
Sbjct: 132 GSFLMEEWDLIHNL 145
>gi|256269754|gb|EEU05021.1| Dus1p [Saccharomyces cerevisiae JAY291]
Length = 423
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + L AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W L+ NL+ N
Sbjct: 91 VQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLI---N 147
Query: 179 MVHFVIAEP 187
+H + P
Sbjct: 148 TLHKNLKVP 156
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 10/77 (12%)
Query: 37 YLQDDWPLL------TELVVHFSWVSKNGPLFM-GPLFIAEPHCDGIDINIGCPQMVAKR 89
Y +D+W L LVV F N P ++ + E CD +D+N+GCPQ +AK+
Sbjct: 72 YREDNWSSLDGSSVDRPLVVQFC---ANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKK 128
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYG++L ++W L+ L
Sbjct: 129 GHYGSFLMEEWDLIHNL 145
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +AK+GHYG++L ++W L+ L+
Sbjct: 108 VEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLI 146
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 13/74 (17%)
Query: 162 YLQDDWPLLT-NLVYSPNMVHFVIAEPH------------CDGNDINIGCPQMVAKRGHY 208
Y +D+W L + V P +V F +P CD D+N+GCPQ +AK+GHY
Sbjct: 72 YREDNWSSLDGSSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHY 131
Query: 209 GAYLQDDWPLLTEL 222
G++L ++W L+ L
Sbjct: 132 GSFLMEEWDLIHNL 145
>gi|349580208|dbj|GAA25368.1| K7_Dus1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 423
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + L AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W L+ NL+ N
Sbjct: 91 VQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLI---N 147
Query: 179 MVHFVIAEP 187
+H + P
Sbjct: 148 TLHKNLKVP 156
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 10/77 (12%)
Query: 37 YLQDDWPLL------TELVVHFSWVSKNGPLFM-GPLFIAEPHCDGIDINIGCPQMVAKR 89
Y +D+W L LVV F N P ++ + E CD +D+N+GCPQ +AK+
Sbjct: 72 YREDNWSSLDGSSVDRPLVVQFC---ANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKK 128
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYG++L ++W L+ L
Sbjct: 129 GHYGSFLMEEWDLIHNL 145
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +AK+GHYG++L ++W L+ L+
Sbjct: 108 VEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLI 146
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 13/74 (17%)
Query: 162 YLQDDWPLLT-NLVYSPNMVHFVIAEPH------------CDGNDINIGCPQMVAKRGHY 208
Y +D+W L + V P +V F +P CD D+N+GCPQ +AK+GHY
Sbjct: 72 YREDNWSSLDGSSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHY 131
Query: 209 GAYLQDDWPLLTEL 222
G++L ++W L+ L
Sbjct: 132 GSFLMEEWDLIHNL 145
>gi|53792892|dbj|BAD54069.1| putative PP35 [Oryza sativa Japonica Group]
gi|53793348|dbj|BAD54568.1| putative PP35 [Oryza sativa Japonica Group]
gi|125598482|gb|EAZ38262.1| hypothetical protein OsJ_22639 [Oryza sativa Japonica Group]
Length = 396
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 43/56 (76%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L +AAK+ EP+CD +DIN GCPQ +A+RG+YGA+L ++ PL+ +LV
Sbjct: 121 VQFCANDPDILLQAAKIVEPYCDYVDINFGCPQRIARRGYYGAFLMNNLPLVKSLV 176
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
EP+CD +DIN GCPQ +A+RG+YGA+L ++ PL+ LV + S
Sbjct: 138 VEPYCDYVDINFGCPQRIARRGYYGAFLMNNLPLVKSLVQNLS 180
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 39 QDDWPLLTELVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 97
++D PL + N P + + I EP+CD +DIN GCPQ +A+RG+YGA+L
Sbjct: 114 KEDRPLFVQFCA-------NDPDILLQAAKIVEPYCDYVDINFGCPQRIARRGYYGAFLM 166
Query: 98 DDWPLLTEL 106
++ PL+ L
Sbjct: 167 NNLPLVKSL 175
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
I EP+CD DIN GCPQ +A+RG+YGA+L ++ PL+ L
Sbjct: 137 IVEPYCDYVDINFGCPQRIARRGYYGAFLMNNLPLVKSL 175
>gi|151946084|gb|EDN64315.1| tRNA dihydrouridine synthase [Saccharomyces cerevisiae YJM789]
gi|259148496|emb|CAY81741.1| Dus1p [Saccharomyces cerevisiae EC1118]
gi|365763678|gb|EHN05204.1| Dus1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 423
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + L AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W L+ NL+ N
Sbjct: 91 VQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLI---N 147
Query: 179 MVHFVIAEP 187
+H + P
Sbjct: 148 TLHKNLKVP 156
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 10/77 (12%)
Query: 37 YLQDDWPLL------TELVVHFSWVSKNGPLFM-GPLFIAEPHCDGIDINIGCPQMVAKR 89
Y +D+W L LVV F N P ++ + E CD +D+N+GCPQ +AK+
Sbjct: 72 YREDNWSSLDGSSVDRPLVVQFC---ANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKK 128
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYG++L ++W L+ L
Sbjct: 129 GHYGSFLMEEWDLIHNL 145
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +AK+GHYG++L ++W L+ L+
Sbjct: 108 VEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLI 146
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 13/74 (17%)
Query: 162 YLQDDWPLLT-NLVYSPNMVHFVIAEPH------------CDGNDINIGCPQMVAKRGHY 208
Y +D+W L + V P +V F +P CD D+N+GCPQ +AK+GHY
Sbjct: 72 YREDNWSSLDGSSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHY 131
Query: 209 GAYLQDDWPLLTEL 222
G++L ++W L+ L
Sbjct: 132 GSFLMEEWDLIHNL 145
>gi|347839539|emb|CCD54111.1| hypothetical protein [Botryotinia fuckeliana]
Length = 597
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND K L E AK P CD +D+N+GCPQ +A+RG YGA+LQ+D L+ L+ N
Sbjct: 136 VQFCANDEKELLEGAKFVAPFCDAVDLNLGCPQGIARRGKYGAFLQEDQGLIFRLI---N 192
Query: 179 MVH 181
+H
Sbjct: 193 TLH 195
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 61 LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L G F+A P CD +D+N+GCPQ +A+RG YGA+LQ+D L+ L
Sbjct: 146 LLEGAKFVA-PFCDAVDLNLGCPQGIARRGKYGAFLQEDQGLIFRL 190
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 29/37 (78%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P CD +D+N+GCPQ +A+RG YGA+LQ+D L+ L+
Sbjct: 155 PFCDAVDLNLGCPQGIARRGKYGAFLQEDQGLIFRLI 191
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P CD D+N+GCPQ +A+RG YGA+LQ+D L+ L
Sbjct: 155 PFCDAVDLNLGCPQGIARRGKYGAFLQEDQGLIFRL 190
>gi|356514252|ref|XP_003525820.1| PREDICTED: tRNA-dihydrouridine synthase 1-like [Glycine max]
Length = 542
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 65 PLFIAEPHCDGIDINIGCPQMVAKRGHYGAY---LQDDWPLLTELGFKTRSHMCGHS--- 118
P FI P D ++ + K G GAY L TE C
Sbjct: 211 PRFIVAPMVDNSELPFR--MLCRKYGAQGAYTPMLHSRIFTETEKYRNEEFTTCKEDRPL 268
Query: 119 -LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L EAA+ E CD +DIN+GCPQ +AKRG+YGA+L D+ PL+ +LV
Sbjct: 269 FVQFCANDPDVLLEAARKVERFCDYVDINLGCPQRIAKRGYYGAFLMDNLPLVKSLV 325
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 31/40 (77%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ E CD +DIN+GCPQ +AKRG+YGA+L D+ PL+ LV
Sbjct: 286 KVERFCDYVDINLGCPQRIAKRGYYGAFLMDNLPLVKSLV 325
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 164 QDDWPLLTNLVYSPNMVHFVIA---EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLT 220
++D PL + V A E CD DIN+GCPQ +AKRG+YGA+L D+ PL+
Sbjct: 263 KEDRPLFVQFCANDPDVLLEAARKVERFCDYVDINLGCPQRIAKRGYYGAFLMDNLPLVK 322
Query: 221 EL 222
L
Sbjct: 323 SL 324
>gi|72393571|ref|XP_847586.1| tRNA-dihydrouridine synthase 1 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62176372|gb|AAX70483.1| tRNA-dihydrouridine synthase 1, putative [Trypanosoma brucei]
gi|70803616|gb|AAZ13520.1| tRNA-dihydrouridine synthase 1, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 520
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 43/56 (76%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
FCGND + + AA+ E +C+ +D NIGCPQ +A+RGHYG++L +DW LL N++++
Sbjct: 160 FCGNDPETVLAAARHVEDYCEAVDFNIGCPQGIARRGHYGSFLMEDWELLHNILHA 215
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 30/38 (78%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E +C+ +D NIGCPQ +A+RGHYG++L +DW LL ++
Sbjct: 176 EDYCEAVDFNIGCPQGIARRGHYGSFLMEDWELLHNIL 213
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 28/34 (82%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 103
E +C+ +D NIGCPQ +A+RGHYG++L +DW LL
Sbjct: 176 EDYCEAVDFNIGCPQGIARRGHYGSFLMEDWELL 209
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLL 219
E +C+ D NIGCPQ +A+RGHYG++L +DW LL
Sbjct: 176 EDYCEAVDFNIGCPQGIARRGHYGSFLMEDWELL 209
>gi|76156585|gb|AAX27767.2| SJCHGC04037 protein [Schistosoma japonicum]
Length = 181
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 17/122 (13%)
Query: 64 GPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGF---KTRSHMCGHS-- 118
P ++ P DG ++ +M+ ++ YG L P++ F K H C
Sbjct: 9 SPKYVLAPMVDGSELAW---RMLGRK--YGVQLTFT-PMINSTSFLVNKKYRHSCLQFAS 62
Query: 119 ------LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTN 172
+ FC N + AKL +P CD +D+N+GCPQ +AK+GHYGA+LQD+W L +
Sbjct: 63 EDRPIIVQFCANSPDTFIKCAKLVQPFCDAVDLNLGCPQGIAKKGHYGAFLQDEWDCLKH 122
Query: 173 LV 174
++
Sbjct: 123 II 124
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Query: 37 YLQDDWPLLTELVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAY 95
+ +D P++ + N P F+ + +P CD +D+N+GCPQ +AK+GHYGA+
Sbjct: 60 FASEDRPIIVQFCA-------NSPDTFIKCAKLVQPFCDAVDLNLGCPQGIAKKGHYGAF 112
Query: 96 LQDDWPLLTELGFKTRSHM 114
LQD+W L + + S +
Sbjct: 113 LQDEWDCLKHIISRASSEL 131
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
+P CD +D+N+GCPQ +AK+GHYGA+LQD+W L ++ S
Sbjct: 86 VQPFCDAVDLNLGCPQGIAKKGHYGAFLQDEWDCLKHIISRAS 128
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 30/39 (76%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ +P CD D+N+GCPQ +AK+GHYGA+LQD+W L +
Sbjct: 85 LVQPFCDAVDLNLGCPQGIAKKGHYGAFLQDEWDCLKHI 123
>gi|452002465|gb|EMD94923.1| hypothetical protein COCHEDRAFT_1168295 [Cochliobolus
heterostrophus C5]
Length = 584
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
++ FC ND + AAK P CD +D+N+GCPQ +AKRG YGA+LQ+DW L+ ++
Sbjct: 135 TVQFCSNDPDDFLRAAKHVAPFCDAVDLNLGCPQGIAKRGKYGAFLQEDWDLIARMI 191
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P CD +D+N+GCPQ +AKRG YGA+LQ+DW L+ ++
Sbjct: 155 PFCDAVDLNLGCPQGIAKRGKYGAFLQEDWDLIARMI 191
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 29/36 (80%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P CD +D+N+GCPQ +AKRG YGA+LQ+DW L+ +
Sbjct: 155 PFCDAVDLNLGCPQGIAKRGKYGAFLQEDWDLIARM 190
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P CD D+N+GCPQ +AKRG YGA+LQ+DW L+ +
Sbjct: 155 PFCDAVDLNLGCPQGIAKRGKYGAFLQEDWDLIARM 190
>gi|448124633|ref|XP_004204973.1| Piso0_000262 [Millerozyma farinosa CBS 7064]
gi|358249606|emb|CCE72672.1| Piso0_000262 [Millerozyma farinosa CBS 7064]
Length = 423
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 21/112 (18%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND+ L +AA+L E CD +D+N+GCPQ +AK+G YGA+L DDW L
Sbjct: 81 VQFCANDTDYLLKAAQLVEDKCDAVDLNLGCPQGIAKKGKYGAFLMDDWTL--------- 131
Query: 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVG 230
+H +I H N+ C R + DDW E +M + G
Sbjct: 132 -IHKLIRTLHD-----NLKCAVTAKIR------IYDDWEKSLEYARMVLDAG 171
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRG 90
R + + L D L L+V F + + + + E CD +D+N+GCPQ +AK+G
Sbjct: 62 RQNMWSELDGDKELDRPLIVQF--CANDTDYLLKAAQLVEDKCDAVDLNLGCPQGIAKKG 119
Query: 91 HYGAYLQDDWPLLTEL 106
YGA+L DDW L+ +L
Sbjct: 120 KYGAFLMDDWTLIHKL 135
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +AK+G YGA+L DDW L+ +L+
Sbjct: 98 VEDKCDAVDLNLGCPQGIAKKGKYGAFLMDDWTLIHKLI 136
>gi|367050712|ref|XP_003655735.1| hypothetical protein THITE_2119764 [Thielavia terrestris NRRL 8126]
gi|347002999|gb|AEO69399.1| hypothetical protein THITE_2119764 [Thielavia terrestris NRRL 8126]
Length = 569
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 43/58 (74%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC ND + L AA++ PHCD +D+N+GCPQ +A++GHYG++LQ+D L+ L+ +
Sbjct: 120 VQFCANDPQALLNAARIVAPHCDAVDLNLGCPQGIARKGHYGSFLQEDQDLIHRLIKT 177
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 31/39 (79%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
I PHCD +D+N+GCPQ +A++GHYG++LQ+D L+ L
Sbjct: 136 IVAPHCDAVDLNLGCPQGIARKGHYGSFLQEDQDLIHRL 174
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 31/37 (83%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
PHCD +D+N+GCPQ +A++GHYG++LQ+D L+ L+
Sbjct: 139 PHCDAVDLNLGCPQGIARKGHYGSFLQEDQDLIHRLI 175
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 31/41 (75%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224
I PHCD D+N+GCPQ +A++GHYG++LQ+D L+ L K
Sbjct: 136 IVAPHCDAVDLNLGCPQGIARKGHYGSFLQEDQDLIHRLIK 176
>gi|409052056|gb|EKM61532.1| hypothetical protein PHACADRAFT_180642 [Phanerochaete carnosa
HHB-10118-sp]
Length = 473
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 41/56 (73%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F ND L +AAK+ E CD +DIN+GCPQ +A+RGHYG+YLQD+W L+ ++
Sbjct: 93 VQFAANDLDWLLKAAKMVEARCDAVDINLGCPQDIARRGHYGSYLQDEWDLIYKMI 148
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 8/67 (11%)
Query: 41 DWPLLTELVVH-FSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
D PL+ + + W+ K + E CD +DIN+GCPQ +A+RGHYG+YLQD+
Sbjct: 88 DRPLIVQFAANDLDWLLKAAKMV-------EARCDAVDINLGCPQDIARRGHYGSYLQDE 140
Query: 100 WPLLTEL 106
W L+ ++
Sbjct: 141 WDLIYKM 147
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 32/39 (82%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +DIN+GCPQ +A+RGHYG+YLQD+W L+ +++
Sbjct: 110 VEARCDAVDINLGCPQDIARRGHYGSYLQDEWDLIYKMI 148
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 31/39 (79%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E CD DIN+GCPQ +A+RGHYG+YLQD+W L+ ++
Sbjct: 109 MVEARCDAVDINLGCPQDIARRGHYGSYLQDEWDLIYKM 147
>gi|451852896|gb|EMD66190.1| hypothetical protein COCSADRAFT_295811 [Cochliobolus sativus
ND90Pr]
Length = 503
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 40/57 (70%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
++ FC ND + AAK P CD +D+N+GCPQ +AKRG YGA+LQ+DW L+ ++
Sbjct: 55 TVQFCSNDPDDFLRAAKHVAPFCDAVDLNLGCPQGIAKRGKYGAFLQEDWDLIARMI 111
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P CD +D+N+GCPQ +AKRG YGA+LQ+DW L+ ++
Sbjct: 75 PFCDAVDLNLGCPQGIAKRGKYGAFLQEDWDLIARMI 111
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 29/36 (80%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P CD +D+N+GCPQ +AKRG YGA+LQ+DW L+ +
Sbjct: 75 PFCDAVDLNLGCPQGIAKRGKYGAFLQEDWDLIARM 110
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P CD D+N+GCPQ +AKRG YGA+LQ+DW L+ +
Sbjct: 75 PFCDAVDLNLGCPQGIAKRGKYGAFLQEDWDLIARM 110
>gi|389632377|ref|XP_003713841.1| tRNA-dihydrouridine synthase 1 [Magnaporthe oryzae 70-15]
gi|351646174|gb|EHA54034.1| tRNA-dihydrouridine synthase 1 [Magnaporthe oryzae 70-15]
gi|440473368|gb|ELQ42171.1| tRNA-dihydrouridine synthase 1 [Magnaporthe oryzae Y34]
gi|440489410|gb|ELQ69066.1| tRNA-dihydrouridine synthase 1 [Magnaporthe oryzae P131]
Length = 614
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 41/56 (73%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L EAAK P+CD +D+N+GCPQ +A++GHYGA+LQ+D L+ L+
Sbjct: 122 VQFCANDPSALLEAAKHVAPYCDAVDLNLGCPQGIARKGHYGAFLQEDQELIHKLI 177
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 32/40 (80%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHF 52
P+CD +D+N+GCPQ +A++GHYGA+LQ+D L+ +L+
Sbjct: 141 PYCDAVDLNLGCPQGIARKGHYGAFLQEDQELIHKLIRQL 180
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 31/36 (86%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P+CD +D+N+GCPQ +A++GHYGA+LQ+D L+ +L
Sbjct: 141 PYCDAVDLNLGCPQGIARKGHYGAFLQEDQELIHKL 176
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 30/36 (83%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +A++GHYGA+LQ+D L+ +L
Sbjct: 141 PYCDAVDLNLGCPQGIARKGHYGAFLQEDQELIHKL 176
>gi|322707292|gb|EFY98871.1| dihydrouridine synthase family protein, putative [Metarhizium
anisopliae ARSEF 23]
Length = 534
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + L AAK P+CD +D+N+GCPQ +A++GHYGA+LQ+D L+ L+ N
Sbjct: 103 VQFCANDPEALLSAAKQVSPYCDAVDLNLGCPQGIARKGHYGAFLQEDQDLIFRLI---N 159
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 160 TLHKELSIP 168
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 32/40 (80%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ P+CD +D+N+GCPQ +A++GHYGA+LQ+D L+ L+
Sbjct: 119 QVSPYCDAVDLNLGCPQGIARKGHYGAFLQEDQDLIFRLI 158
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 30/36 (83%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P+CD +D+N+GCPQ +A++GHYGA+LQ+D L+ L
Sbjct: 122 PYCDAVDLNLGCPQGIARKGHYGAFLQEDQDLIFRL 157
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 29/36 (80%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +A++GHYGA+LQ+D L+ L
Sbjct: 122 PYCDAVDLNLGCPQGIARKGHYGAFLQEDQDLIFRL 157
>gi|322702122|gb|EFY93870.1| dihydrouridine synthase family protein, putative [Metarhizium
acridum CQMa 102]
Length = 543
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + L AAK P+CD +D+N+GCPQ +A++GHYGA+LQ+D L+ L+ N
Sbjct: 112 VQFCANDPEALLSAAKQVSPYCDAVDLNLGCPQGIARKGHYGAFLQEDQDLIFRLI---N 168
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 169 TLHKELSIP 177
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 32/40 (80%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ P+CD +D+N+GCPQ +A++GHYGA+LQ+D L+ L+
Sbjct: 128 QVSPYCDAVDLNLGCPQGIARKGHYGAFLQEDQDLIFRLI 167
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 30/36 (83%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P+CD +D+N+GCPQ +A++GHYGA+LQ+D L+ L
Sbjct: 131 PYCDAVDLNLGCPQGIARKGHYGAFLQEDQDLIFRL 166
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 29/36 (80%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +A++GHYGA+LQ+D L+ L
Sbjct: 131 PYCDAVDLNLGCPQGIARKGHYGAFLQEDQDLIFRL 166
>gi|401842715|gb|EJT44807.1| DUS1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 154
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 43/58 (74%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC ND +L AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W L+ NL+ +
Sbjct: 78 VQFCANDPVHLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLIST 135
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 10/77 (12%)
Query: 37 YLQDDWPLL------TELVVHFSWVSKNGPL-FMGPLFIAEPHCDGIDINIGCPQMVAKR 89
Y +D+W L LVV F N P+ + + E CD +D+N+GCPQ +AK+
Sbjct: 59 YREDNWSPLDGSDGDRPLVVQFC---ANDPVHLLAAAKLVEDKCDAVDLNLGCPQGIAKK 115
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYG++L ++W L+ L
Sbjct: 116 GHYGSFLMEEWDLIHNL 132
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +AK+GHYG++L ++W L+ L+
Sbjct: 95 VEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLI 133
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E CD D+N+GCPQ +AK+GHYG++L ++W L+ L
Sbjct: 94 LVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNL 132
>gi|242002314|ref|XP_002435800.1| tRNA-dihydrouridine synthase, putative [Ixodes scapularis]
gi|215499136|gb|EEC08630.1| tRNA-dihydrouridine synthase, putative [Ixodes scapularis]
Length = 483
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 41/56 (73%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND + L +A++L HC +D+N+GCPQ +A+ GHYGA+LQDDW LL +V
Sbjct: 77 VQFCANDPEVLVQASRLVVGHCCAVDLNLGCPQAIARAGHYGAFLQDDWDLLARMV 132
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/36 (61%), Positives = 29/36 (80%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
HC +D+N+GCPQ +A+ GHYGA+LQDDW LL +V
Sbjct: 97 HCCAVDLNLGCPQAIARAGHYGAFLQDDWDLLARMV 132
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 28/35 (80%)
Query: 72 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
HC +D+N+GCPQ +A+ GHYGA+LQDDW LL +
Sbjct: 97 HCCAVDLNLGCPQAIARAGHYGAFLQDDWDLLARM 131
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 188 HCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
HC D+N+GCPQ +A+ GHYGA+LQDDW LL +
Sbjct: 97 HCCAVDLNLGCPQAIARAGHYGAFLQDDWDLLARM 131
>gi|343426744|emb|CBQ70272.1| related to tRNA dihydrouridine synthase [Sporisorium reilianum
SRZ2]
Length = 505
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ C ND+ L AA++ E CD +D+N+GCPQ +A+RGHYG+YL +DW L+ L+ N
Sbjct: 146 VQLCSNDAATLLRAAQVVEDRCDAVDLNLGCPQHIARRGHYGSYLMEDWALIFALI---N 202
Query: 179 MVHFVIAEP 187
+H + P
Sbjct: 203 TLHLNLKIP 211
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 35 GAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGA 94
G+ D PL +L S + + + E CD +D+N+GCPQ +A+RGHYG+
Sbjct: 135 GSSTDSDRPLFVQLC------SNDAATLLRAAQVVEDRCDAVDLNLGCPQHIARRGHYGS 188
Query: 95 YLQDDWPLLTEL 106
YL +DW L+ L
Sbjct: 189 YLMEDWALIFAL 200
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +A+RGHYG+YL +DW L+ L+
Sbjct: 163 VEDRCDAVDLNLGCPQHIARRGHYGSYLMEDWALIFALI 201
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E CD D+N+GCPQ +A+RGHYG+YL +DW L+ L
Sbjct: 162 VVEDRCDAVDLNLGCPQHIARRGHYGSYLMEDWALIFAL 200
>gi|50303583|ref|XP_451733.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640865|emb|CAH02126.1| KLLA0B04499p [Kluyveromyces lactis]
Length = 425
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 43/58 (74%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC ND + L +AAKL + CD +D+NIGCPQ +A++G YGA+L +DW L++ L+ +
Sbjct: 81 VQFCANDPEYLLQAAKLVQNKCDAVDLNIGCPQGIARKGKYGAFLMEDWDLISRLIST 138
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 75/168 (44%), Gaps = 37/168 (22%)
Query: 48 LVVHFSWVSKNGPLFM-GPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
LVV F N P ++ + + CD +D+NIGCPQ +A++G YGA+L +DW L++ L
Sbjct: 79 LVVQFC---ANDPEYLLQAAKLVQNKCDAVDLNIGCPQGIARKGKYGAFLMEDWDLISRL 135
Query: 107 -----------------GFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGC 149
F R ++ M + ++ LT +L E G +
Sbjct: 136 ISTLHEHLDVPVTAKIRVFPEREKTLEYAKMILKSGAQFLTVHGRLREQK--GQQTGLAD 193
Query: 150 PQMVAKRGHYGAYLQDDWPLLT------NLVYSPNMVHFVIAEPHCDG 191
+++ YL+D+ P T N++Y P + + + HCDG
Sbjct: 194 WEII-------KYLRDNLPQDTVFFANGNILY-PEDISRCMNKIHCDG 233
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 29/36 (80%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
CD +D+NIGCPQ +A++G YGA+L +DW L++ L+
Sbjct: 101 KCDAVDLNIGCPQGIARKGKYGAFLMEDWDLISRLI 136
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ + CD D+NIGCPQ +A++G YGA+L +DW L++ L
Sbjct: 97 LVQNKCDAVDLNIGCPQGIARKGKYGAFLMEDWDLISRL 135
>gi|407418441|gb|EKF38196.1| dihydrouridine synthase (Dus), putative [Trypanosoma cruzi
marinkellei]
Length = 519
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 43/57 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
+ FCGND+ L AA+ E C+ +D+N+GCPQ +A+RGHYG++L +DW L+ N+++
Sbjct: 184 VQFCGNDADTLLAAARYVENDCEAVDVNLGCPQGIARRGHYGSFLMEDWDLVHNILH 240
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E C+ +D+N+GCPQ +A+RGHYG++L +DW L+ ++
Sbjct: 201 VENDCEAVDVNLGCPQGIARRGHYGSFLMEDWDLVHNIL 239
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 28/34 (82%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 103
E C+ +D+N+GCPQ +A+RGHYG++L +DW L+
Sbjct: 202 ENDCEAVDVNLGCPQGIARRGHYGSFLMEDWDLV 235
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLL 219
E C+ D+N+GCPQ +A+RGHYG++L +DW L+
Sbjct: 202 ENDCEAVDVNLGCPQGIARRGHYGSFLMEDWDLV 235
>gi|346971599|gb|EGY15051.1| tRNA-dihydrouridine synthase [Verticillium dahliae VdLs.17]
Length = 743
Score = 73.2 bits (178), Expect = 9e-11, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + L AA+ A P+CD +DIN GCPQ +A++GHYGA+LQ+D L+ LV N
Sbjct: 278 VQFCANDPEALLGAAQRAAPYCDAVDINFGCPQGIARKGHYGAFLQEDQDLVFRLV---N 334
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 335 TLHRHLSIP 343
Score = 58.5 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/37 (59%), Positives = 30/37 (81%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +DIN GCPQ +A++GHYGA+LQ+D L+ LV
Sbjct: 297 PYCDAVDINFGCPQGIARKGHYGAFLQEDQDLVFRLV 333
Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 69 AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHM 114
A P+CD +DIN GCPQ +A++GHYGA+LQ+D L+ L H+
Sbjct: 295 AAPYCDAVDINFGCPQGIARKGHYGAFLQEDQDLVFRLVNTLHRHL 340
Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/38 (57%), Positives = 29/38 (76%)
Query: 185 AEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
A P+CD DIN GCPQ +A++GHYGA+LQ+D L+ L
Sbjct: 295 AAPYCDAVDINFGCPQGIARKGHYGAFLQEDQDLVFRL 332
>gi|449663327|ref|XP_002167268.2| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like,
partial [Hydra magnipapillata]
Length = 132
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 40/55 (72%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 173
FC ND + EA LAEP+CDG+D+N+GCPQ++A RGHYG+YL ++ L+ +
Sbjct: 78 FQFCANDPQIFAEACALAEPYCDGVDLNLGCPQVIAARGHYGSYLMEELDLVEEI 132
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 44/66 (66%), Gaps = 6/66 (9%)
Query: 41 DWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 100
D PLL F + + + +F +AEP+CDG+D+N+GCPQ++A RGHYG+YL ++
Sbjct: 73 DRPLL------FQFCANDPQIFAEACALAEPYCDGVDLNLGCPQVIAARGHYGSYLMEEL 126
Query: 101 PLLTEL 106
L+ E+
Sbjct: 127 DLVEEI 132
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 32/38 (84%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 48
EP+CDG+D+N+GCPQ++A RGHYG+YL ++ L+ E+
Sbjct: 95 AEPYCDGVDLNLGCPQVIAARGHYGSYLMEELDLVEEI 132
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 33/40 (82%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+AEP+CDG D+N+GCPQ++A RGHYG+YL ++ L+ E+
Sbjct: 93 ALAEPYCDGVDLNLGCPQVIAARGHYGSYLMEELDLVEEI 132
>gi|190408164|gb|EDV11429.1| tRNA dihydrouridine synthase [Saccharomyces cerevisiae RM11-1a]
Length = 423
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + L AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W L+ NL N
Sbjct: 91 VQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLT---N 147
Query: 179 MVHFVIAEP 187
+H + P
Sbjct: 148 TLHKNLKVP 156
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 10/77 (12%)
Query: 37 YLQDDWPLL------TELVVHFSWVSKNGPLFM-GPLFIAEPHCDGIDINIGCPQMVAKR 89
Y +D+W L LVV F N P ++ + E CD +D+N+GCPQ +AK+
Sbjct: 72 YREDNWSSLDGSSVDRPLVVQFC---ANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKK 128
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYG++L ++W L+ L
Sbjct: 129 GHYGSFLMEEWDLIHNL 145
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +AK+GHYG++L ++W L+ L
Sbjct: 108 VEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLT 146
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 13/74 (17%)
Query: 162 YLQDDWPLLT-NLVYSPNMVHFVIAEPH------------CDGNDINIGCPQMVAKRGHY 208
Y +D+W L + V P +V F +P CD D+N+GCPQ +AK+GHY
Sbjct: 72 YREDNWSSLDGSSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHY 131
Query: 209 GAYLQDDWPLLTEL 222
G++L ++W L+ L
Sbjct: 132 GSFLMEEWDLIHNL 145
>gi|156037856|ref|XP_001586655.1| hypothetical protein SS1G_12642 [Sclerotinia sclerotiorum 1980]
gi|154698050|gb|EDN97788.1| hypothetical protein SS1G_12642 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 587
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 39/56 (69%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND K L E AK P CD +D+N+GCPQ +A+RG YGA+LQ+D L+ L+
Sbjct: 136 VQFCANDEKELLEGAKYVAPFCDAVDLNLGCPQGIARRGKYGAFLQEDQGLIYKLI 191
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Query: 61 LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L G ++A P CD +D+N+GCPQ +A+RG YGA+LQ+D L+ +L
Sbjct: 146 LLEGAKYVA-PFCDAVDLNLGCPQGIARRGKYGAFLQEDQGLIYKL 190
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 30/37 (81%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P CD +D+N+GCPQ +A+RG YGA+LQ+D L+ +L+
Sbjct: 155 PFCDAVDLNLGCPQGIARRGKYGAFLQEDQGLIYKLI 191
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P CD D+N+GCPQ +A+RG YGA+LQ+D L+ +L
Sbjct: 155 PFCDAVDLNLGCPQGIARRGKYGAFLQEDQGLIYKL 190
>gi|50289099|ref|XP_446979.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526288|emb|CAG59912.1| unnamed protein product [Candida glabrata]
Length = 412
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 43/58 (74%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC ND + L +AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W L+ L+ +
Sbjct: 85 VQFCANDPEYLLQAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHKLIKT 142
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 38 LQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 97
L D L LVV F + + + + E CD +D+N+GCPQ +AK+GHYG++L
Sbjct: 73 LDGDSKLDRPLVVQF--CANDPEYLLQAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLM 130
Query: 98 DDWPLLTEL 106
++W L+ +L
Sbjct: 131 EEWDLIHKL 139
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 31/39 (79%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +AK+GHYG++L ++W L+ +L+
Sbjct: 102 VEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHKLI 140
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224
+ E CD D+N+GCPQ +AK+GHYG++L ++W L+ +L K
Sbjct: 101 LVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHKLIK 141
>gi|241952224|ref|XP_002418834.1| tRNA-dihydrouridine synthase, putative [Candida dubliniensis CD36]
gi|223642173|emb|CAX44140.1| tRNA-dihydrouridine synthase, putative [Candida dubliniensis CD36]
Length = 463
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 40/56 (71%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L +AAKL E CD ID+N+GCPQ +A++G YGA+L DDW L+ L+
Sbjct: 120 VQFCANDPDYLLQAAKLIEDECDAIDLNLGCPQGIARKGKYGAFLMDDWDLVYKLI 175
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 31/41 (75%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHF 52
E CD ID+N+GCPQ +A++G YGA+L DDW L+ +L+ +
Sbjct: 138 EDECDAIDLNLGCPQGIARKGKYGAFLMDDWDLVYKLIKNL 178
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 30/39 (76%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ E CD ID+N+GCPQ +A++G YGA+L DDW L+ +L
Sbjct: 136 LIEDECDAIDLNLGCPQGIARKGKYGAFLMDDWDLVYKL 174
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224
+ E CD D+N+GCPQ +A++G YGA+L DDW L+ +L K
Sbjct: 136 LIEDECDAIDLNLGCPQGIARKGKYGAFLMDDWDLVYKLIK 176
>gi|320164949|gb|EFW41848.1| tRNA-dihydrouridine synthase 1-like protein [Capsaspora owczarzaki
ATCC 30864]
Length = 563
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 41/56 (73%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND +L AAKL E CD +D+N+GCPQ +A+RGHYG++L ++W L+ +V
Sbjct: 91 VQFCANDPDHLLAAAKLVENDCDAVDLNLGCPQHIARRGHYGSFLMEEWDLIERMV 146
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +A+RGHYG++L ++W L+ +V
Sbjct: 108 VENDCDAVDLNLGCPQHIARRGHYGSFLMEEWDLIERMV 146
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFK 109
+ E CD +D+N+GCPQ +A+RGHYG++L ++W L+ + K
Sbjct: 107 LVENDCDAVDLNLGCPQHIARRGHYGSFLMEEWDLIERMVRK 148
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 30/41 (73%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224
+ E CD D+N+GCPQ +A+RGHYG++L ++W L+ + +
Sbjct: 107 LVENDCDAVDLNLGCPQHIARRGHYGSFLMEEWDLIERMVR 147
>gi|449468305|ref|XP_004151862.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Cucumis sativus]
gi|449484028|ref|XP_004156763.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Cucumis sativus]
Length = 426
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 42/56 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L EAA+ EP+CD +D+N+GCPQ +A+RG+YGA+L D+ PL+ +V
Sbjct: 155 VQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLMDNLPLVKAIV 210
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 6/76 (7%)
Query: 39 QDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
Q+D PL + + + + + + EP+CD +D+N+GCPQ +A+RG+YGA+L D
Sbjct: 148 QEDRPLFVQ------FCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLMD 201
Query: 99 DWPLLTELGFKTRSHM 114
+ PL+ + K S++
Sbjct: 202 NLPLVKAIVEKLASNL 217
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 32/40 (80%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
EP+CD +D+N+GCPQ +A+RG+YGA+L D+ PL+ +V
Sbjct: 171 RVEPYCDYVDLNLGCPQRIARRGNYGAFLMDNLPLVKAIV 210
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 164 QDDWPLLTNLVYSPNMVHFVIA---EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLT 220
Q+D PL + V A EP+CD D+N+GCPQ +A+RG+YGA+L D+ PL+
Sbjct: 148 QEDRPLFVQFCANDPDVLLEAARRVEPYCDYVDLNLGCPQRIARRGNYGAFLMDNLPLVK 207
Query: 221 EL 222
+
Sbjct: 208 AI 209
>gi|390602729|gb|EIN12121.1| FMN-linked oxidoreductase [Punctularia strigosozonata HHB-11173
SS5]
Length = 513
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 42/58 (72%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCGN+ + AA+ P+CD +DIN+GCPQ +A+RG YGA+LQD+W L+ ++ +
Sbjct: 113 VQFCGNNPDQILSAAQDLAPYCDAVDINLGCPQDIARRGKYGAFLQDEWELVEKIIST 170
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 6/78 (7%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPH 72
P+CD +DIN+GCPQ +A+RG YGA+LQD+W L+ +++ S + KN P+ + F P
Sbjct: 132 PYCDAVDINLGCPQDIARRGKYGAFLQDEWELVEKII---STLHKNIPIPVTAKFRVFP- 187
Query: 73 CDGIDINIGCPQMVAKRG 90
++ + +M+ + G
Sbjct: 188 --SVEKTVAYAKMLERAG 203
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 31/36 (86%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P+CD +DIN+GCPQ +A+RG YGA+LQD+W L+ ++
Sbjct: 132 PYCDAVDINLGCPQDIARRGKYGAFLQDEWELVEKI 167
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 30/36 (83%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD DIN+GCPQ +A+RG YGA+LQD+W L+ ++
Sbjct: 132 PYCDAVDINLGCPQDIARRGKYGAFLQDEWELVEKI 167
>gi|345563607|gb|EGX46594.1| hypothetical protein AOL_s00097g610 [Arthrobotrys oligospora ATCC
24927]
Length = 517
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 9/94 (9%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND ++L AAK+A+ HCD +D+N+GCPQ +A++GHYGA+LQ+ L+ L+ N
Sbjct: 128 IQFCANDPQHLLAAAKIAQHHCDAVDLNLGCPQGIARKGHYGAFLQEQPDLIYKLI---N 184
Query: 179 MVHFVIAEPHC------DGNDINIGCPQMVAKRG 206
+H + P D + +G +MV G
Sbjct: 185 TLHKELDIPVTAKIRILDTKEATLGYAKMVLDAG 218
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 32/39 (82%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
IA+ HCD +D+N+GCPQ +A++GHYGA+LQ+ L+ +L
Sbjct: 144 IAQHHCDAVDLNLGCPQGIARKGHYGAFLQEQPDLIYKL 182
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 30/36 (83%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
HCD +D+N+GCPQ +A++GHYGA+LQ+ L+ +L+
Sbjct: 148 HCDAVDLNLGCPQGIARKGHYGAFLQEQPDLIYKLI 183
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 31/39 (79%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
IA+ HCD D+N+GCPQ +A++GHYGA+LQ+ L+ +L
Sbjct: 144 IAQHHCDAVDLNLGCPQGIARKGHYGAFLQEQPDLIYKL 182
>gi|326484320|gb|EGE08330.1| tRNA-dihydrouridine synthase [Trichophyton equinum CBS 127.97]
Length = 566
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L +AA+ E HCD +D+N+GCPQ +AK+GHYGA+LQ+D L+ L+ N
Sbjct: 136 VQFCANDPDELLKAARHVEEHCDAVDLNLGCPQGIAKKGHYGAFLQEDPDLIYKLI---N 192
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 193 KLHNELSIP 201
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 32/38 (84%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E HCD +D+N+GCPQ +AK+GHYGA+LQ+D L+ +L+
Sbjct: 154 EEHCDAVDLNLGCPQGIAKKGHYGAFLQEDPDLIYKLI 191
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 31/37 (83%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
E HCD +D+N+GCPQ +AK+GHYGA+LQ+D L+ +L
Sbjct: 154 EEHCDAVDLNLGCPQGIAKKGHYGAFLQEDPDLIYKL 190
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 30/37 (81%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
E HCD D+N+GCPQ +AK+GHYGA+LQ+D L+ +L
Sbjct: 154 EEHCDAVDLNLGCPQGIAKKGHYGAFLQEDPDLIYKL 190
>gi|68482886|ref|XP_714669.1| likely tRNA dihydrouridine synthase [Candida albicans SC5314]
gi|68483082|ref|XP_714575.1| likely tRNA dihydrouridine synthase [Candida albicans SC5314]
gi|46436155|gb|EAK95523.1| likely tRNA dihydrouridine synthase [Candida albicans SC5314]
gi|46436256|gb|EAK95622.1| likely tRNA dihydrouridine synthase [Candida albicans SC5314]
gi|238883810|gb|EEQ47448.1| tRNA-dihydrouridine synthase 1 [Candida albicans WO-1]
Length = 467
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 40/56 (71%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L +AAKL E CD ID+N+GCPQ +A++G YGA+L DDW L+ L+
Sbjct: 122 VQFCANDPDYLLQAAKLIENECDAIDLNLGCPQGIARKGKYGAFLMDDWDLVYKLI 177
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD ID+N+GCPQ +A++G YGA+L DDW L+ +L+
Sbjct: 140 ENECDAIDLNLGCPQGIARKGKYGAFLMDDWDLVYKLI 177
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 30/39 (76%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ E CD ID+N+GCPQ +A++G YGA+L DDW L+ +L
Sbjct: 138 LIENECDAIDLNLGCPQGIARKGKYGAFLMDDWDLVYKL 176
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224
+ E CD D+N+GCPQ +A++G YGA+L DDW L+ +L K
Sbjct: 138 LIENECDAIDLNLGCPQGIARKGKYGAFLMDDWDLVYKLIK 178
>gi|302499246|ref|XP_003011619.1| hypothetical protein ARB_02173 [Arthroderma benhamiae CBS 112371]
gi|302667563|ref|XP_003025363.1| hypothetical protein TRV_00424 [Trichophyton verrucosum HKI 0517]
gi|291175171|gb|EFE30979.1| hypothetical protein ARB_02173 [Arthroderma benhamiae CBS 112371]
gi|291189471|gb|EFE44752.1| hypothetical protein TRV_00424 [Trichophyton verrucosum HKI 0517]
Length = 567
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L +AA+ E HCD +D+N+GCPQ +AK+GHYGA+LQ+D L+ L+ N
Sbjct: 136 VQFCANDPDELLKAARHVEAHCDAVDLNLGCPQGIAKKGHYGAFLQEDPDLIYKLI---N 192
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 193 KLHNELSIP 201
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 32/39 (82%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E HCD +D+N+GCPQ +AK+GHYGA+LQ+D L+ +L+
Sbjct: 153 VEAHCDAVDLNLGCPQGIAKKGHYGAFLQEDPDLIYKLI 191
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 31/37 (83%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
E HCD +D+N+GCPQ +AK+GHYGA+LQ+D L+ +L
Sbjct: 154 EAHCDAVDLNLGCPQGIAKKGHYGAFLQEDPDLIYKL 190
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 30/37 (81%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
E HCD D+N+GCPQ +AK+GHYGA+LQ+D L+ +L
Sbjct: 154 EAHCDAVDLNLGCPQGIAKKGHYGAFLQEDPDLIYKL 190
>gi|392589128|gb|EIW78459.1| FMN-linked oxidoreductase [Coniophora puteana RWD-64-598 SS2]
Length = 363
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 18/107 (16%)
Query: 84 QMVAKRGHYGAYLQDDWPLLTELGFKTRSHM------CGHS--------LMFCGNDSKNL 129
+++ + + +L+D W + + RSHM C + + CGND + +
Sbjct: 43 RLINDQDYLETHLRDLWE--KHVQEEARSHMHASHRVCAQTTRNAPPVVVQLCGNDPETI 100
Query: 130 TEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLV 174
AA+ + HCDGID+N+GCPQ A+ GHYG YL + DWPL+ ++V
Sbjct: 101 VRAARTVQQHCDGIDLNLGCPQEHAREGHYGGYLLGRKDWPLVQSIV 147
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 3/53 (5%)
Query: 69 AEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL-GFKTRSHMCGHS 118
+ HCDGID+N+GCPQ A+ GHYG YL + DWPL+ + T+ +C H+
Sbjct: 107 VQQHCDGIDLNLGCPQEHAREGHYGGYLLGRKDWPLVQSIVPVSTKIRLCQHA 159
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELV 49
+ HCDGID+N+GCPQ A+ GHYG YL + DWPL+ +V
Sbjct: 108 QQHCDGIDLNLGCPQEHAREGHYGGYLLGRKDWPLVQSIV 147
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 185 AEPHCDGNDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 222
+ HCDG D+N+GCPQ A+ GHYG YL + DWPL+ +
Sbjct: 107 VQQHCDGIDLNLGCPQEHAREGHYGGYLLGRKDWPLVQSI 146
>gi|448122297|ref|XP_004204415.1| Piso0_000262 [Millerozyma farinosa CBS 7064]
gi|358349954|emb|CCE73233.1| Piso0_000262 [Millerozyma farinosa CBS 7064]
Length = 423
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 41/58 (70%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC ND L +AA+L E CD +D+N+GCPQ +AK+G YGA+L DDW L+ L+ +
Sbjct: 81 VQFCANDPDYLLKAAQLVEDKCDAVDLNLGCPQGIAKKGKYGAFLMDDWTLIHKLIRT 138
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRG 90
R + + L D L L+V F + + + + E CD +D+N+GCPQ +AK+G
Sbjct: 62 RQNMWSELDGDKELDRPLIVQF--CANDPDYLLKAAQLVEDKCDAVDLNLGCPQGIAKKG 119
Query: 91 HYGAYLQDDWPLLTEL 106
YGA+L DDW L+ +L
Sbjct: 120 KYGAFLMDDWTLIHKL 135
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +AK+G YGA+L DDW L+ +L+
Sbjct: 98 VEDKCDAVDLNLGCPQGIAKKGKYGAFLMDDWTLIHKLI 136
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E CD D+N+GCPQ +AK+G YGA+L DDW L+ +L
Sbjct: 97 LVEDKCDAVDLNLGCPQGIAKKGKYGAFLMDDWTLIHKL 135
>gi|367027128|ref|XP_003662848.1| hypothetical protein MYCTH_2303945 [Myceliophthora thermophila ATCC
42464]
gi|347010117|gb|AEO57603.1| hypothetical protein MYCTH_2303945 [Myceliophthora thermophila ATCC
42464]
Length = 523
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 42/58 (72%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC ND + L AAKL P+CD +D+N+GCPQ +AK+G YG++LQ+D L+ L+ +
Sbjct: 111 VQFCANDPQALLSAAKLVAPYCDAVDLNLGCPQNIAKKGRYGSFLQEDQELIHQLIKT 168
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 31/37 (83%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +AK+G YG++LQ+D L+ +L+
Sbjct: 130 PYCDAVDLNLGCPQNIAKKGRYGSFLQEDQELIHQLI 166
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 31/39 (79%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ P+CD +D+N+GCPQ +AK+G YG++LQ+D L+ +L
Sbjct: 127 LVAPYCDAVDLNLGCPQNIAKKGRYGSFLQEDQELIHQL 165
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 31/41 (75%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224
+ P+CD D+N+GCPQ +AK+G YG++LQ+D L+ +L K
Sbjct: 127 LVAPYCDAVDLNLGCPQNIAKKGRYGSFLQEDQELIHQLIK 167
>gi|402580526|gb|EJW74476.1| hypothetical protein WUBG_14616, partial [Wuchereria bancrofti]
Length = 245
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 40/56 (71%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L A +L E CDG+D+N+GCPQ++AKRG YGAYLQ+D L+ +V
Sbjct: 43 VQFCANDPVILLNACQLVENFCDGVDLNLGCPQLIAKRGRYGAYLQEDLKLICEMV 98
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 6/67 (8%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
DD PL+ + + + + + + + E CDG+D+N+GCPQ++AKRG YGAYLQ+D
Sbjct: 37 DDRPLVVQ------FCANDPVILLNACQLVENFCDGVDLNLGCPQLIAKRGRYGAYLQED 90
Query: 100 WPLLTEL 106
L+ E+
Sbjct: 91 LKLICEM 97
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK 57
E CDG+D+N+GCPQ++AKRG YGAYLQ+D L+ E+V S+
Sbjct: 60 VENFCDGVDLNLGCPQLIAKRGRYGAYLQEDLKLICEMVTLLHSRSR 106
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 165 DDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTE 221
DD PL+ + ++ + E CDG D+N+GCPQ++AKRG YGAYLQ+D L+ E
Sbjct: 37 DDRPLVVQFCANDPVILLNACQLVENFCDGVDLNLGCPQLIAKRGRYGAYLQEDLKLICE 96
Query: 222 L 222
+
Sbjct: 97 M 97
>gi|326502988|dbj|BAJ95927.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 430
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 42/56 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L +AAK+ E +CD +D+N GCPQ +AKRG+YGA+L D+ PL+ +LV
Sbjct: 153 VQFCANDPDILLQAAKMVEANCDYVDLNFGCPQRIAKRGYYGAFLMDNLPLVKSLV 208
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
E +CD +D+N GCPQ +AKRG+YGA+L D+ PL+ LV + +
Sbjct: 170 VEANCDYVDLNFGCPQRIAKRGYYGAFLMDNLPLVKSLVQNLA 212
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 39 QDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
++D PL + + + + + + + E +CD +D+N GCPQ +AKRG+YGA+L D
Sbjct: 146 KEDRPLFVQ------FCANDPDILLQAAKMVEANCDYVDLNFGCPQRIAKRGYYGAFLMD 199
Query: 99 DWPLLTEL 106
+ PL+ L
Sbjct: 200 NLPLVKSL 207
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E +CD D+N GCPQ +AKRG+YGA+L D+ PL+ L
Sbjct: 169 MVEANCDYVDLNFGCPQRIAKRGYYGAFLMDNLPLVKSL 207
>gi|164661924|ref|XP_001732084.1| hypothetical protein MGL_0677 [Malassezia globosa CBS 7966]
gi|159105986|gb|EDP44870.1| hypothetical protein MGL_0677 [Malassezia globosa CBS 7966]
Length = 473
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L EAA+ + CD +D+N+GCPQ +AKRG +GA+L DDW L+ L+ N
Sbjct: 113 VQFCANDPDMLLEAAQAVQDKCDAVDLNLGCPQQIAKRGKFGAFLMDDWDLVFRLI---N 169
Query: 179 MVHFVIAEPHC------DGNDINIGCPQMVAKRG 206
+H + P D + +I +M+ + G
Sbjct: 170 TLHLNLKVPVTAKFRVYDSVEKSIAYARMIQRAG 203
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 28/35 (80%)
Query: 15 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
CD +D+N+GCPQ +AKRG +GA+L DDW L+ L+
Sbjct: 134 CDAVDLNLGCPQQIAKRGKFGAFLMDDWDLVFRLI 168
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 73 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
CD +D+N+GCPQ +AKRG +GA+L DDW L+ L
Sbjct: 134 CDAVDLNLGCPQQIAKRGKFGAFLMDDWDLVFRL 167
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 189 CDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
CD D+N+GCPQ +AKRG +GA+L DDW L+ L
Sbjct: 134 CDAVDLNLGCPQQIAKRGKFGAFLMDDWDLVFRL 167
>gi|126135962|ref|XP_001384505.1| hypothetical protein PICST_58121 [Scheffersomyces stipitis CBS
6054]
gi|126091703|gb|ABN66476.1| tRNA dihydrouridine synthase [Scheffersomyces stipitis CBS 6054]
Length = 415
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 55/112 (49%), Gaps = 21/112 (18%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L +AAK E CD +D+N+GCPQ +AK+G YGA+L DDW +
Sbjct: 82 VQFCANDPDYLLQAAKFVEDKCDAVDLNLGCPQGIAKKGKYGAFLMDDW----------D 131
Query: 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVG 230
+VH +I H N+ P R + DDW + KM + G
Sbjct: 132 LVHTLIKNLHD-----NLKVPVTAKIR------IYDDWEKSLQYAKMILDAG 172
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +AK+G YGA+L DDW L+ L+
Sbjct: 99 VEDKCDAVDLNLGCPQGIAKKGKYGAFLMDDWDLVHTLI 137
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGP--LFMGPLFIAEPHCDGIDINIGCPQMVAK 88
R + + L D+ L+V F N P L F+ E CD +D+N+GCPQ +AK
Sbjct: 63 RDNMWSELDGDFEKDRPLIVQFC---ANDPDYLLQAAKFV-EDKCDAVDLNLGCPQGIAK 118
Query: 89 RGHYGAYLQDDWPLLTEL 106
+G YGA+L DDW L+ L
Sbjct: 119 KGKYGAFLMDDWDLVHTL 136
>gi|430812366|emb|CCJ30231.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 358
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 44/60 (73%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND ++ +A+K+ CD +D+N+GCPQ +AKRG+YGAYLQ++W L++ ++ N
Sbjct: 76 VQFCANDPEDFLKASKIVVGKCDAVDLNLGCPQNIAKRGYYGAYLQENWDLISKIIKYVN 135
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 12/75 (16%)
Query: 162 YLQDDWPLLTNLVYSPNMVHFVIAEPH------------CDGNDINIGCPQMVAKRGHYG 209
Y ++ W L N P +V F +P CD D+N+GCPQ +AKRG+YG
Sbjct: 58 YRKEVWSSLDNGKDRPLIVQFCANDPEDFLKASKIVVGKCDAVDLNLGCPQNIAKRGYYG 117
Query: 210 AYLQDDWPLLTELGK 224
AYLQ++W L++++ K
Sbjct: 118 AYLQENWDLISKIIK 132
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 34/40 (85%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
CD +D+N+GCPQ +AKRG+YGAYLQ++W L+++++ + +
Sbjct: 96 KCDAVDLNLGCPQNIAKRGYYGAYLQENWDLISKIIKYVN 135
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 34/45 (75%)
Query: 62 FMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
F+ I CD +D+N+GCPQ +AKRG+YGAYLQ++W L++++
Sbjct: 86 FLKASKIVVGKCDAVDLNLGCPQNIAKRGYYGAYLQENWDLISKI 130
>gi|400597446|gb|EJP65179.1| dihydrouridine synthase [Beauveria bassiana ARSEF 2860]
Length = 551
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 43/58 (74%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC ND +L AA+ P+CD +D+N+GCPQ +A++GHYGA+LQ+D L+ L+++
Sbjct: 127 VQFCANDPAHLLAAARQVAPYCDAVDLNLGCPQGIARKGHYGAFLQEDQDLVFRLIHT 184
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 32/40 (80%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ P+CD +D+N+GCPQ +A++GHYGA+LQ+D L+ L+
Sbjct: 143 QVAPYCDAVDLNLGCPQGIARKGHYGAFLQEDQDLVFRLI 182
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 30/36 (83%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P+CD +D+N+GCPQ +A++GHYGA+LQ+D L+ L
Sbjct: 146 PYCDAVDLNLGCPQGIARKGHYGAFLQEDQDLVFRL 181
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 29/36 (80%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +A++GHYGA+LQ+D L+ L
Sbjct: 146 PYCDAVDLNLGCPQGIARKGHYGAFLQEDQDLVFRL 181
>gi|303390091|ref|XP_003073277.1| tRNA-dihydrouridine synthase [Encephalitozoon intestinalis ATCC
50506]
gi|303302422|gb|ADM11917.1| tRNA-dihydrouridine synthase [Encephalitozoon intestinalis ATCC
50506]
Length = 341
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 39/56 (69%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ CGN K + EAA + + HCD IDIN GCPQ VA++G YGAYLQ++W L +V
Sbjct: 72 IQICGNSPKTMLEAALIMQNHCDAIDINFGCPQKVARKGGYGAYLQENWDLTERIV 127
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPL 61
HCD IDIN GCPQ VA++G YGAYLQ++W LTE +V N P+
Sbjct: 92 HCDAIDINFGCPQKVARKGGYGAYLQENWD-LTERIVKVLSTGLNVPV 138
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 39 QDDWPLLTELVVHFSWVSKNGPLFM-GPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 97
+ D PL+ + + N P M I + HCD IDIN GCPQ VA++G YGAYLQ
Sbjct: 65 ESDRPLVIQ-------ICGNSPKTMLEAALIMQNHCDAIDINFGCPQKVARKGGYGAYLQ 117
Query: 98 DDWPLLTEL 106
++W L +
Sbjct: 118 ENWDLTERI 126
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225
+I + HCD DIN GCPQ VA++G YGAYLQ++W L + K+
Sbjct: 87 LIMQNHCDAIDINFGCPQKVARKGGYGAYLQENWDLTERIVKV 129
>gi|320583070|gb|EFW97286.1| tRNA-dihydrouridine synthase 1 [Ogataea parapolymorpha DL-1]
Length = 402
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 41/56 (73%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L +AAK E CD +D+N+GCPQ +A++GHYG++L +DW L++ L+
Sbjct: 80 VQFCANDPDYLLQAAKHVEDRCDAVDLNLGCPQGIARKGHYGSFLMEDWDLISKLI 135
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 32/39 (82%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +A++GHYG++L +DW L+++L+
Sbjct: 97 VEDRCDAVDLNLGCPQGIARKGHYGSFLMEDWDLISKLI 135
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 31/38 (81%)
Query: 69 AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
E CD +D+N+GCPQ +A++GHYG++L +DW L+++L
Sbjct: 97 VEDRCDAVDLNLGCPQGIARKGHYGSFLMEDWDLISKL 134
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 30/38 (78%)
Query: 185 AEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
E CD D+N+GCPQ +A++GHYG++L +DW L+++L
Sbjct: 97 VEDRCDAVDLNLGCPQGIARKGHYGSFLMEDWDLISKL 134
>gi|448521763|ref|XP_003868569.1| Dus1 protein [Candida orthopsilosis Co 90-125]
gi|380352909|emb|CCG25665.1| Dus1 protein [Candida orthopsilosis]
Length = 474
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 41/56 (73%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND + L +AAKL E CD +D+N+GCPQ +AK+G YG++L +DW L+ L+
Sbjct: 132 VQFCANDPEILLQAAKLVENQCDAVDLNLGCPQGIAKKGKYGSFLMEDWDLIHKLI 187
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELG 107
L+V F + + + + + E CD +D+N+GCPQ +AK+G YG++L +DW L+ +L
Sbjct: 130 LIVQF--CANDPEILLQAAKLVENQCDAVDLNLGCPQGIAKKGKYGSFLMEDWDLIHKLI 187
Query: 108 FKTRSHMC 115
K +++
Sbjct: 188 RKLHNNLS 195
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +AK+G YG++L +DW L+ +L+
Sbjct: 149 VENQCDAVDLNLGCPQGIAKKGKYGSFLMEDWDLIHKLI 187
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E CD D+N+GCPQ +AK+G YG++L +DW L+ +L
Sbjct: 148 LVENQCDAVDLNLGCPQGIAKKGKYGSFLMEDWDLIHKL 186
>gi|340959502|gb|EGS20683.1| dihydrouridine synthase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 552
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 42/56 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND +L AAK+ +P+CD +D+N+GCPQ +AK+G YG++LQ+D L+ L+
Sbjct: 115 VQFCANDPDHLLAAAKIVQPYCDAVDLNLGCPQNIAKKGRYGSFLQEDQELIFKLI 170
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 32/39 (82%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
I +P+CD +D+N+GCPQ +AK+G YG++LQ+D L+ +L
Sbjct: 131 IVQPYCDAVDLNLGCPQNIAKKGRYGSFLQEDQELIFKL 169
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 32/39 (82%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+P+CD +D+N+GCPQ +AK+G YG++LQ+D L+ +L+
Sbjct: 132 VQPYCDAVDLNLGCPQNIAKKGRYGSFLQEDQELIFKLI 170
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 31/39 (79%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
I +P+CD D+N+GCPQ +AK+G YG++LQ+D L+ +L
Sbjct: 131 IVQPYCDAVDLNLGCPQNIAKKGRYGSFLQEDQELIFKL 169
>gi|340520638|gb|EGR50874.1| hypothetical protein TRIREDRAFT_75921 [Trichoderma reesei QM6a]
Length = 564
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 45/63 (71%), Gaps = 3/63 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + L AAK P+CD +D+N+GCPQ +A++GHYGA+LQ+D L+ LV N
Sbjct: 113 VQFCANDPEALLAAAKHVVPYCDAVDLNLGCPQGIARKGHYGAFLQEDQDLIFKLV---N 169
Query: 179 MVH 181
++H
Sbjct: 170 ILH 172
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 32/37 (86%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +A++GHYGA+LQ+D L+ +LV
Sbjct: 132 PYCDAVDLNLGCPQGIARKGHYGAFLQEDQDLIFKLV 168
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 31/36 (86%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P+CD +D+N+GCPQ +A++GHYGA+LQ+D L+ +L
Sbjct: 132 PYCDAVDLNLGCPQGIARKGHYGAFLQEDQDLIFKL 167
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 30/36 (83%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +A++GHYGA+LQ+D L+ +L
Sbjct: 132 PYCDAVDLNLGCPQGIARKGHYGAFLQEDQDLIFKL 167
>gi|449544653|gb|EMD35626.1| hypothetical protein CERSUDRAFT_85566 [Ceriporiopsis subvermispora
B]
Length = 311
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYS 176
+ CGNDS+ + EA K + +CD ID+N+GCPQ A+ HYGAYL Q DWPL+ N+V +
Sbjct: 31 VQLCGNDSEMVVEAGKKVQGYCDAIDLNLGCPQEAARDAHYGAYLLGQKDWPLVENMVSA 90
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELVVHFS 53
+ + +CD ID+N+GCPQ A+ HYGAYL Q DWPL+ +V S
Sbjct: 47 KVQGYCDAIDLNLGCPQEAARDAHYGAYLLGQKDWPLVENMVSAMS 92
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
Query: 72 HCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 106
+CD ID+N+GCPQ A+ HYGAYL Q DWPL+ +
Sbjct: 51 YCDAIDLNLGCPQEAARDAHYGAYLLGQKDWPLVENM 87
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 188 HCDGNDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 222
+CD D+N+GCPQ A+ HYGAYL Q DWPL+ +
Sbjct: 51 YCDAIDLNLGCPQEAARDAHYGAYLLGQKDWPLVENM 87
>gi|389610003|dbj|BAM18613.1| t-diRNAhydrouridine synthase [Papilio xuthus]
Length = 364
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 55/111 (49%), Gaps = 8/111 (7%)
Query: 129 LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPH 188
+ AAKL E CD IDIN+GCPQ +AKRG YGA+LQDDW LL +V + M V
Sbjct: 1 MAAAAKLVEKDCDAIDINLGCPQSIAKRGRYGAFLQDDWSLLQKIVTA--MSQAVTVPIT 58
Query: 189 CDGNDINIGCPQMVAKRGHYGAYLQDD-WPLLTELGKMAMLVGILDNTGSW 238
C + + K Y LQ+ LLT G+ G L +W
Sbjct: 59 C-----KVRVFDSIDKSIEYALMLQNAGCKLLTVHGRTREQKGPLTGIANW 104
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 32/43 (74%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
E CD IDIN+GCPQ +AKRG YGA+LQDDW LL ++V S
Sbjct: 8 VEKDCDAIDINLGCPQSIAKRGRYGAFLQDDWSLLQKIVTAMS 50
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 31/39 (79%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ E CD IDIN+GCPQ +AKRG YGA+LQDDW LL ++
Sbjct: 7 LVEKDCDAIDINLGCPQSIAKRGRYGAFLQDDWSLLQKI 45
>gi|407918795|gb|EKG12059.1| Carboxylesterase type B [Macrophomina phaseolina MS6]
Length = 507
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 7/77 (9%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS-- 176
+ FC ND + AA+ P CD +D+N+GCPQ +A++GHYGA+LQ+DW +++L+
Sbjct: 130 VQFCSNDPNDFLLAAQHVAPFCDAVDLNLGCPQGIARKGHYGAFLQEDWDTISSLISRLH 189
Query: 177 -----PNMVHFVIAEPH 188
P F + E H
Sbjct: 190 AELPIPVTAKFRVQETH 206
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 31/37 (83%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P CD +D+N+GCPQ +A++GHYGA+LQ+DW ++ L+
Sbjct: 149 PFCDAVDLNLGCPQGIARKGHYGAFLQEDWDTISSLI 185
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 30/36 (83%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P CD +D+N+GCPQ +A++GHYGA+LQ+DW ++ L
Sbjct: 149 PFCDAVDLNLGCPQGIARKGHYGAFLQEDWDTISSL 184
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 29/36 (80%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P CD D+N+GCPQ +A++GHYGA+LQ+DW ++ L
Sbjct: 149 PFCDAVDLNLGCPQGIARKGHYGAFLQEDWDTISSL 184
>gi|378733917|gb|EHY60376.1| tRNA-dihydrouridine synthase 1 [Exophiala dermatitidis NIH/UT8656]
Length = 566
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC N + L +AA+ P+CD +D+N+GCPQ +AK GHYGA+LQ DW + L+ N
Sbjct: 139 VQFCANKPEELLDAAQYVAPYCDAVDLNLGCPQGIAKAGHYGAFLQKDWDTIYKLI---N 195
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 196 TLHKDLSVP 204
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +AK GHYGA+LQ DW + +L+
Sbjct: 158 PYCDAVDLNLGCPQGIAKAGHYGAFLQKDWDTIYKLI 194
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L V F +K L ++A P+CD +D+N+GCPQ +AK GHYGA+LQ DW + +L
Sbjct: 137 LFVQFC-ANKPEELLDAAQYVA-PYCDAVDLNLGCPQGIAKAGHYGAFLQKDWDTIYKL 193
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +AK GHYGA+LQ DW + +L
Sbjct: 158 PYCDAVDLNLGCPQGIAKAGHYGAFLQKDWDTIYKL 193
>gi|452825082|gb|EME32081.1| tRNA-dihydrouridine synthase 1 [Galdieria sulphuraria]
Length = 314
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 41/58 (70%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC ND AA+L + CD +D+N+GCPQ +AK+G+YGA+LQD+W L+ +V +
Sbjct: 75 VQFCANDPDIFVRAAELVQFQCDAVDLNLGCPQHIAKKGYYGAFLQDNWQLIERIVST 132
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 9/78 (11%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAK 88
++ H+ ++D PL VV F N P +F+ + + CD +D+N+GCPQ +AK
Sbjct: 60 RKTHFTT-CEEDRPL----VVQFC---ANDPDIFVRAAELVQFQCDAVDLNLGCPQHIAK 111
Query: 89 RGHYGAYLQDDWPLLTEL 106
+G+YGA+LQD+W L+ +
Sbjct: 112 KGYYGAFLQDNWQLIERI 129
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 30/36 (83%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
CD +D+N+GCPQ +AK+G+YGA+LQD+W L+ +V
Sbjct: 95 QCDAVDLNLGCPQHIAKKGYYGAFLQDNWQLIERIV 130
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 14/80 (17%)
Query: 155 KRGHYGAYLQDDWPLLTNL--------VYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRG 206
++ H+ ++D PL+ V + +V F CD D+N+GCPQ +AK+G
Sbjct: 60 RKTHFTT-CEEDRPLVVQFCANDPDIFVRAAELVQF-----QCDAVDLNLGCPQHIAKKG 113
Query: 207 HYGAYLQDDWPLLTELGKMA 226
+YGA+LQD+W L+ + A
Sbjct: 114 YYGAFLQDNWQLIERIVSTA 133
>gi|444316610|ref|XP_004178962.1| hypothetical protein TBLA_0B06180 [Tetrapisispora blattae CBS 6284]
gi|387512002|emb|CCH59443.1| hypothetical protein TBLA_0B06180 [Tetrapisispora blattae CBS 6284]
Length = 432
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 42/56 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L +AAKL + CD +D+N+GCPQ +AK+GHYG++L ++W L+ +L+
Sbjct: 90 VQFCANDPDYLLQAAKLVQDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHSLI 145
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 13/68 (19%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSK 127
+ + CD +D+N+GCPQ +AK+GHYG++L ++W L+ HSL+ +D+
Sbjct: 106 LVQDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLI-------------HSLIKKLHDNL 152
Query: 128 NLTEAAKL 135
N+ AK+
Sbjct: 153 NIPVTAKI 160
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ CD +D+N+GCPQ +AK+GHYG++L ++W L+ L+
Sbjct: 107 VQDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHSLI 145
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 30/41 (73%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224
+ + CD D+N+GCPQ +AK+GHYG++L ++W L+ L K
Sbjct: 106 LVQDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHSLIK 146
>gi|315043678|ref|XP_003171215.1| hypothetical protein MGYG_07214 [Arthroderma gypseum CBS 118893]
gi|311345004|gb|EFR04207.1| hypothetical protein MGYG_07214 [Arthroderma gypseum CBS 118893]
Length = 568
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC N+ L +AA+ E HCD +D+N+GCPQ +AK+GHYGA+LQ+D L+ L+ N
Sbjct: 135 VQFCANNPDELLKAARHVEEHCDAVDLNLGCPQGIAKKGHYGAFLQEDPDLIYKLI---N 191
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 192 KLHTELSIP 200
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 32/38 (84%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E HCD +D+N+GCPQ +AK+GHYGA+LQ+D L+ +L+
Sbjct: 153 EEHCDAVDLNLGCPQGIAKKGHYGAFLQEDPDLIYKLI 190
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 18/153 (11%)
Query: 79 NIGCPQMVAK----RGHYGAYLQDDWPLLTE--LGFKTRSHMCGHSLMFCGNDSKNLTEA 132
+IGCP+M+ R + W +LT G ++ + +S MF ++ EA
Sbjct: 46 SIGCPKMIVAPMVDRSEFA------WRMLTRSFTGEESSPPILAYSPMF---HARFFNEA 96
Query: 133 AKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL-VYSPNMVHFVI--AEPHC 189
H + I + + D P + +P+ + E HC
Sbjct: 97 PAYRTQHFEPIRQTKAGTDEATAEAYLDGNPKYDRPFIVQFCANNPDELLKAARHVEEHC 156
Query: 190 DGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
D D+N+GCPQ +AK+GHYGA+LQ+D L+ +L
Sbjct: 157 DAVDLNLGCPQGIAKKGHYGAFLQEDPDLIYKL 189
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 34/46 (73%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMC 115
E HCD +D+N+GCPQ +AK+GHYGA+LQ+D L+ +L K + +
Sbjct: 153 EEHCDAVDLNLGCPQGIAKKGHYGAFLQEDPDLIYKLINKLHTELS 198
>gi|302676381|ref|XP_003027874.1| hypothetical protein SCHCODRAFT_60830 [Schizophyllum commune H4-8]
gi|300101561|gb|EFI92971.1| hypothetical protein SCHCODRAFT_60830 [Schizophyllum commune H4-8]
Length = 282
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYS 176
+ CGND++ + +AAK + C GID+N+GCPQ A+ GHYGAYL Q DWPL+ ++V S
Sbjct: 71 VQVCGNDTELVVQAAKRVQTLCQGIDLNLGCPQDAAREGHYGAYLLGQKDWPLVNDIVSS 130
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 35/49 (71%), Gaps = 4/49 (8%)
Query: 8 RIETEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELVVHFSW 54
R++T C GID+N+GCPQ A+ GHYGAYL Q DWPL+ ++V S+
Sbjct: 87 RVQT--LCQGIDLNLGCPQDAAREGHYGAYLLGQKDWPLVNDIVSSLSY 133
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 73 CDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELGFKTRSHM---CGHSLMFCGNDSK 127
C GID+N+GCPQ A+ GHYGAYL Q DWPL+ ++ + L C K
Sbjct: 92 CQGIDLNLGCPQDAAREGHYGAYLLGQKDWPLVNDIVSSLSYSLTIPVSAKLRLCQPSIK 151
Query: 128 NLTEAAKLAEPHCDGIDINIGCPQMV-AKRGHYGA 161
L A L + ++ P+ V A+R GA
Sbjct: 152 TLAFATALEASGASWVTLH---PRTVSARRRRQGA 183
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 189 CDGNDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 222
C G D+N+GCPQ A+ GHYGAYL Q DWPL+ ++
Sbjct: 92 CQGIDLNLGCPQDAAREGHYGAYLLGQKDWPLVNDI 127
>gi|336273712|ref|XP_003351610.1| hypothetical protein SMAC_00151 [Sordaria macrospora k-hell]
gi|380095890|emb|CCC05936.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 614
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L AAKL P+CD +D+N+GCPQ +AKRG YG++LQ++ L+ L+ N
Sbjct: 139 VQFCANDPSYLLSAAKLVAPYCDAVDLNLGCPQGIAKRGQYGSFLQENQELIFELI---N 195
Query: 179 MVH 181
+H
Sbjct: 196 TLH 198
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 31/37 (83%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +AKRG YG++LQ++ L+ EL+
Sbjct: 158 PYCDAVDLNLGCPQGIAKRGQYGSFLQENQELIFELI 194
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 31/39 (79%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ P+CD +D+N+GCPQ +AKRG YG++LQ++ L+ EL
Sbjct: 155 LVAPYCDAVDLNLGCPQGIAKRGQYGSFLQENQELIFEL 193
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ P+CD D+N+GCPQ +AKRG YG++LQ++ L+ EL
Sbjct: 155 LVAPYCDAVDLNLGCPQGIAKRGQYGSFLQENQELIFEL 193
>gi|295657937|ref|XP_002789532.1| tRNA-dihydrouridine synthase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283236|gb|EEH38802.1| tRNA-dihydrouridine synthase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 563
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L AA+ EP CD +D+N+GCPQ +A++GHYGA+LQ++ L+ L+ N
Sbjct: 118 VQFCANDPDELLHAARTVEPFCDAVDLNLGCPQGIARKGHYGAFLQEEPELIYKLI---N 174
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 175 TLHTELSIP 183
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 32/38 (84%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
EP CD +D+N+GCPQ +A++GHYGA+LQ++ L+ +L+
Sbjct: 136 EPFCDAVDLNLGCPQGIARKGHYGAFLQEEPELIYKLI 173
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 31/37 (83%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
EP CD +D+N+GCPQ +A++GHYGA+LQ++ L+ +L
Sbjct: 136 EPFCDAVDLNLGCPQGIARKGHYGAFLQEEPELIYKL 172
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 30/37 (81%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
EP CD D+N+GCPQ +A++GHYGA+LQ++ L+ +L
Sbjct: 136 EPFCDAVDLNLGCPQGIARKGHYGAFLQEEPELIYKL 172
>gi|346327564|gb|EGX97160.1| tRNA-dihydrouridine synthase C [Cordyceps militaris CM01]
Length = 539
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 42/58 (72%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC ND +L AA+ P+CD +D+N+GCPQ +A++GHYGA+LQ+D L+ L+ +
Sbjct: 126 VQFCANDPAHLLAAARQVAPYCDAVDLNLGCPQGIARKGHYGAFLQEDQDLVFRLIRT 183
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 32/40 (80%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ P+CD +D+N+GCPQ +A++GHYGA+LQ+D L+ L+
Sbjct: 142 QVAPYCDAVDLNLGCPQGIARKGHYGAFLQEDQDLVFRLI 181
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 30/36 (83%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P+CD +D+N+GCPQ +A++GHYGA+LQ+D L+ L
Sbjct: 145 PYCDAVDLNLGCPQGIARKGHYGAFLQEDQDLVFRL 180
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 29/36 (80%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +A++GHYGA+LQ+D L+ L
Sbjct: 145 PYCDAVDLNLGCPQGIARKGHYGAFLQEDQDLVFRL 180
>gi|365986096|ref|XP_003669880.1| hypothetical protein NDAI_0D03230 [Naumovozyma dairenensis CBS 421]
gi|343768649|emb|CCD24637.1| hypothetical protein NDAI_0D03230 [Naumovozyma dairenensis CBS 421]
Length = 429
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 43/58 (74%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC ND + L +AAKL E CD +D+N+GCPQ +A++GHYG++L ++W L+ L+ +
Sbjct: 79 VQFCANDPEYLLKAAKLIENKCDAVDLNLGCPQGIARKGHYGSFLMEEWDLIHKLIKT 136
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 31/38 (81%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +A++GHYG++L ++W L+ +L+
Sbjct: 97 ENKCDAVDLNLGCPQGIARKGHYGSFLMEEWDLIHKLI 134
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
LVV F + + + + E CD +D+N+GCPQ +A++GHYG++L ++W L+ +L
Sbjct: 77 LVVQF--CANDPEYLLKAAKLIENKCDAVDLNLGCPQGIARKGHYGSFLMEEWDLIHKL 133
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 31/41 (75%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224
+ E CD D+N+GCPQ +A++GHYG++L ++W L+ +L K
Sbjct: 95 LIENKCDAVDLNLGCPQGIARKGHYGSFLMEEWDLIHKLIK 135
>gi|346464753|gb|AEO32221.1| hypothetical protein [Amblyomma maculatum]
Length = 446
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L EA+++ HC +D+N+GCPQ +A+ GHYGA+LQD+W LL+ +V N
Sbjct: 77 VQFCANDPDVLFEASRMVVGHCCAVDLNLGCPQAIARAGHYGAFLQDEWDLLSKMV---N 133
Query: 179 MVHFVIAEP 187
+H + P
Sbjct: 134 KLHTELEIP 142
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 31/36 (86%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
HC +D+N+GCPQ +A+ GHYGA+LQD+W LL+++V
Sbjct: 97 HCCAVDLNLGCPQAIARAGHYGAFLQDEWDLLSKMV 132
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 46 TELVVHFSWVSKNGP--LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 103
T L+V F N P LF + HC +D+N+GCPQ +A+ GHYGA+LQD+W LL
Sbjct: 73 TPLIVQFC---ANDPDVLFEASRMVVG-HCCAVDLNLGCPQAIARAGHYGAFLQDEWDLL 128
Query: 104 TELGFKTRSHM 114
+++ K + +
Sbjct: 129 SKMVNKLHTEL 139
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 156 RGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEP---HCDGNDINIGCPQMVAKRGHYGAYL 212
R A +D PL+ + V F + HC D+N+GCPQ +A+ GHYGA+L
Sbjct: 62 RQESLASCDEDTPLIVQFCANDPDVLFEASRMVVGHCCAVDLNLGCPQAIARAGHYGAFL 121
Query: 213 QDDWPLLTEL 222
QD+W LL+++
Sbjct: 122 QDEWDLLSKM 131
>gi|336469596|gb|EGO57758.1| hypothetical protein NEUTE1DRAFT_62941 [Neurospora tetrasperma FGSC
2508]
gi|350290757|gb|EGZ71971.1| FMN-linked oxidoreductase [Neurospora tetrasperma FGSC 2509]
Length = 594
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L AAKL P+CD +D+N+GCPQ +AKRG YG++LQ++ L+ L+ N
Sbjct: 86 VQFCANDPAYLLSAAKLVAPYCDAVDLNLGCPQGIAKRGQYGSFLQENQELIFELI---N 142
Query: 179 MVH 181
+H
Sbjct: 143 TLH 145
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 31/37 (83%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +AKRG YG++LQ++ L+ EL+
Sbjct: 105 PYCDAVDLNLGCPQGIAKRGQYGSFLQENQELIFELI 141
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 52 FSWVSKNGPLFM-GPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
F N P ++ + P+CD +D+N+GCPQ +AKRG YG++LQ++ L+ EL
Sbjct: 85 FVQFCANDPAYLLSAAKLVAPYCDAVDLNLGCPQGIAKRGQYGSFLQENQELIFEL 140
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ P+CD D+N+GCPQ +AKRG YG++LQ++ L+ EL
Sbjct: 102 LVAPYCDAVDLNLGCPQGIAKRGQYGSFLQENQELIFEL 140
>gi|354545348|emb|CCE42076.1| hypothetical protein CPAR2_806250 [Candida parapsilosis]
Length = 434
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 40/56 (71%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L +AAKL E CD +D+N+GCPQ +AK+G YG++L +DW L+ L+
Sbjct: 92 VQFCANDPDTLLQAAKLVEGQCDAVDLNLGCPQGIAKKGKYGSFLMEDWGLIHKLI 147
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 31/42 (73%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHF 52
E CD +D+N+GCPQ +AK+G YG++L +DW L+ +L+ +
Sbjct: 109 VEGQCDAVDLNLGCPQGIAKKGKYGSFLMEDWGLIHKLIANL 150
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ E CD +D+N+GCPQ +AK+G YG++L +DW L+ +L
Sbjct: 108 LVEGQCDAVDLNLGCPQGIAKKGKYGSFLMEDWGLIHKL 146
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E CD D+N+GCPQ +AK+G YG++L +DW L+ +L
Sbjct: 108 LVEGQCDAVDLNLGCPQGIAKKGKYGSFLMEDWGLIHKL 146
>gi|164428803|ref|XP_956375.2| hypothetical protein NCU00065 [Neurospora crassa OR74A]
gi|157072287|gb|EAA27139.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 576
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 43/63 (68%), Gaps = 3/63 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L AAKL P+CD +D+N+GCPQ +AKRG YG++LQ++ L+ L+ N
Sbjct: 86 VQFCANDPAYLLSAAKLVAPYCDAVDLNLGCPQGIAKRGQYGSFLQENQELIFELI---N 142
Query: 179 MVH 181
+H
Sbjct: 143 TLH 145
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 31/37 (83%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +AKRG YG++LQ++ L+ EL+
Sbjct: 105 PYCDAVDLNLGCPQGIAKRGQYGSFLQENQELIFELI 141
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 52 FSWVSKNGPLFM-GPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
F N P ++ + P+CD +D+N+GCPQ +AKRG YG++LQ++ L+ EL
Sbjct: 85 FVQFCANDPAYLLSAAKLVAPYCDAVDLNLGCPQGIAKRGQYGSFLQENQELIFEL 140
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ P+CD D+N+GCPQ +AKRG YG++LQ++ L+ EL
Sbjct: 102 LVAPYCDAVDLNLGCPQGIAKRGQYGSFLQENQELIFEL 140
>gi|410077060|ref|XP_003956112.1| hypothetical protein KAFR_0B06800 [Kazachstania africana CBS 2517]
gi|372462695|emb|CCF56977.1| hypothetical protein KAFR_0B06800 [Kazachstania africana CBS 2517]
Length = 427
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 42/58 (72%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC ND + L AAKL + CD +D+N+GCPQ +AK+GHYG++L ++W L+ L+ +
Sbjct: 90 VQFCANDPEYLLAAAKLVQDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHKLIRT 147
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 48 LVVHFSWVSKNGPLFM-GPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F N P ++ + + CD +D+N+GCPQ +AK+GHYG++L ++W L+ +L
Sbjct: 88 LIVQFC---ANDPEYLLAAAKLVQDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHKL 144
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 31/39 (79%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ CD +D+N+GCPQ +AK+GHYG++L ++W L+ +L+
Sbjct: 107 VQDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHKLI 145
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 30/39 (76%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ + CD D+N+GCPQ +AK+GHYG++L ++W L+ +L
Sbjct: 106 LVQDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHKL 144
>gi|261191538|ref|XP_002622177.1| dihydrouridine synthase [Ajellomyces dermatitidis SLH14081]
gi|239589943|gb|EEQ72586.1| dihydrouridine synthase [Ajellomyces dermatitidis SLH14081]
gi|239612649|gb|EEQ89636.1| dihydrouridine synthase [Ajellomyces dermatitidis ER-3]
gi|327351718|gb|EGE80575.1| dihydrouridine synthase [Ajellomyces dermatitidis ATCC 18188]
Length = 564
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND +L +AA+ EP CD +D+N+GCPQ +A++GHYGA+LQ+ L+ L+ N
Sbjct: 117 VQFCANDPDDLLQAARTVEPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYKLI---N 173
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 174 TLHRELSIP 182
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 31/39 (79%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
EP CD +D+N+GCPQ +A++GHYGA+LQ+ L+ +L+
Sbjct: 134 VEPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYKLI 172
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 30/37 (81%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
EP CD +D+N+GCPQ +A++GHYGA+LQ+ L+ +L
Sbjct: 135 EPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYKL 171
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 29/37 (78%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
EP CD D+N+GCPQ +A++GHYGA+LQ+ L+ +L
Sbjct: 135 EPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYKL 171
>gi|406698303|gb|EKD01541.1| tRNA dihydrouridine synthase [Trichosporon asahii var. asahii CBS
8904]
Length = 648
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 39/59 (66%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+L FC ND L AAK + CD +DIN GCPQ +AKRG YG++L +DW L+ L+ +
Sbjct: 204 TLQFCANDPDVLLSAAKKVQNRCDAVDINFGCPQGIAKRGKYGSFLMEDWDLIARLIST 262
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
CD +DIN GCPQ +AKRG YG++L +DW L+ L+
Sbjct: 225 RCDAVDINFGCPQGIAKRGKYGSFLMEDWDLIARLI 260
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 72 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
CD +DIN GCPQ +AKRG YG++L +DW L+ L
Sbjct: 225 RCDAVDINFGCPQGIAKRGKYGSFLMEDWDLIARL 259
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 188 HCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
CD DIN GCPQ +AKRG YG++L +DW L+ L
Sbjct: 225 RCDAVDINFGCPQGIAKRGKYGSFLMEDWDLIARL 259
>gi|401886416|gb|EJT50452.1| tRNA dihydrouridine synthase [Trichosporon asahii var. asahii CBS
2479]
Length = 453
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 39/59 (66%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+L FC ND L AAK + CD +DIN GCPQ +AKRG YG++L +DW L+ L+ +
Sbjct: 204 TLQFCANDPDVLLSAAKKVQNRCDAVDINFGCPQGIAKRGKYGSFLMEDWDLIARLIST 262
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ + CD +DIN GCPQ +AKRG YG++L +DW L+ L+
Sbjct: 221 KVQNRCDAVDINFGCPQGIAKRGKYGSFLMEDWDLIARLI 260
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 72 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
CD +DIN GCPQ +AKRG YG++L +DW L+ L
Sbjct: 225 RCDAVDINFGCPQGIAKRGKYGSFLMEDWDLIARL 259
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 188 HCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
CD DIN GCPQ +AKRG YG++L +DW L+ L
Sbjct: 225 RCDAVDINFGCPQGIAKRGKYGSFLMEDWDLIARL 259
>gi|367005783|ref|XP_003687623.1| hypothetical protein TPHA_0K00550 [Tetrapisispora phaffii CBS 4417]
gi|357525928|emb|CCE65189.1| hypothetical protein TPHA_0K00550 [Tetrapisispora phaffii CBS 4417]
Length = 424
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 42/58 (72%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC ND + L AAKL + CD +D+N+GCPQ +A++GHYG++L ++W L+ L+ +
Sbjct: 87 VQFCANDPEYLLAAAKLVQDKCDAVDLNLGCPQGIARKGHYGSFLMEEWDLIRKLIRT 144
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 48 LVVHFSWVSKNGPLFM-GPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
LVV F N P ++ + + CD +D+N+GCPQ +A++GHYG++L ++W L+ +L
Sbjct: 85 LVVQFC---ANDPEYLLAAAKLVQDKCDAVDLNLGCPQGIARKGHYGSFLMEEWDLIRKL 141
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 31/39 (79%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ CD +D+N+GCPQ +A++GHYG++L ++W L+ +L+
Sbjct: 104 VQDKCDAVDLNLGCPQGIARKGHYGSFLMEEWDLIRKLI 142
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 30/39 (76%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ + CD D+N+GCPQ +A++GHYG++L ++W L+ +L
Sbjct: 103 LVQDKCDAVDLNLGCPQGIARKGHYGSFLMEEWDLIRKL 141
>gi|224094282|ref|XP_002310123.1| predicted protein [Populus trichocarpa]
gi|222853026|gb|EEE90573.1| predicted protein [Populus trichocarpa]
Length = 358
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 42/56 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L +AA+ EP+CD +DIN+GCPQ +A+RG+YGA+L D+ L+ +LV
Sbjct: 143 VQFCANDPDILLQAARRVEPYCDYVDINLGCPQRIARRGYYGAFLMDNLLLVKSLV 198
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPL 61
EP+CD +DIN+GCPQ +A+RG+YGA+L D+ L+ LV + ++ N P+
Sbjct: 159 RVEPYCDYVDINLGCPQRIARRGYYGAFLMDNLLLVKSLVEKLA-INLNVPV 209
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 37 YLQDDWPLLTELVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAY 95
Y ++++ E F N P + + EP+CD +DIN+GCPQ +A+RG+YGA+
Sbjct: 127 YRREEFTTCKEDRPLFVQFCANDPDILLQAARRVEPYCDYVDINLGCPQRIARRGYYGAF 186
Query: 96 LQDDWPLLTEL 106
L D+ L+ L
Sbjct: 187 LMDNLLLVKSL 197
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 185 AEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL-GKMAMLVGI 231
EP+CD DIN+GCPQ +A+RG+YGA+L D+ L+ L K+A+ + +
Sbjct: 160 VEPYCDYVDINLGCPQRIARRGYYGAFLMDNLLLVKSLVEKLAINLNV 207
>gi|71411788|ref|XP_808128.1| dihydrouridine synthase (Dus) [Trypanosoma cruzi strain CL Brener]
gi|70872267|gb|EAN86277.1| dihydrouridine synthase (Dus), putative [Trypanosoma cruzi]
Length = 548
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 42/57 (73%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
+ FCGND+ L AA+ E C+ +D+N+GCPQ +A+RGHYG++L +DW + N+++
Sbjct: 184 VQFCGNDADTLLAAARHVEDDCEAVDVNLGCPQGIARRGHYGSFLMEDWDRVHNILH 240
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 26/32 (81%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 42
E C+ +D+N+GCPQ +A+RGHYG++L +DW
Sbjct: 201 VEDDCEAVDVNLGCPQGIARRGHYGSFLMEDW 232
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 26/31 (83%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 100
E C+ +D+N+GCPQ +A+RGHYG++L +DW
Sbjct: 202 EDDCEAVDVNLGCPQGIARRGHYGSFLMEDW 232
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDW 216
E C+ D+N+GCPQ +A+RGHYG++L +DW
Sbjct: 202 EDDCEAVDVNLGCPQGIARRGHYGSFLMEDW 232
>gi|402086955|gb|EJT81853.1| hypothetical protein GGTG_01827 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 562
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 41/58 (70%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC N+ L +AA+ PHCD +D+N+GCPQ +AK+G YGA+LQ+D L+ L+ +
Sbjct: 113 VQFCANEPAALLDAARRVAPHCDAVDLNLGCPQGIAKKGRYGAFLQEDQALIHRLIRT 170
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
PHCD +D+N+GCPQ +AK+G YGA+LQ+D L+ L+
Sbjct: 132 PHCDAVDLNLGCPQGIAKKGRYGAFLQEDQALIHRLI 168
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 29/36 (80%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
PHCD +D+N+GCPQ +AK+G YGA+LQ+D L+ L
Sbjct: 132 PHCDAVDLNLGCPQGIAKKGRYGAFLQEDQALIHRL 167
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 28/36 (77%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
PHCD D+N+GCPQ +AK+G YGA+LQ+D L+ L
Sbjct: 132 PHCDAVDLNLGCPQGIAKKGRYGAFLQEDQALIHRL 167
>gi|254567437|ref|XP_002490829.1| tRNA-dihydrouridine synthase 1 [Komagataella pastoris GS115]
gi|238030625|emb|CAY68549.1| tRNA-dihydrouridine synthase 1 [Komagataella pastoris GS115]
gi|328351211|emb|CCA37611.1| tRNA-dihydrouridine synthase 1 [Komagataella pastoris CBS 7435]
Length = 407
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 41/56 (73%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND + L +AA+L CD +D+N+GCPQ +AK+G+YG++L DDW L+ L+
Sbjct: 82 VQFCANDPEYLLQAARLVADKCDAVDLNLGCPQGIAKKGNYGSFLMDDWKLVHRLI 137
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHF 52
CD +D+N+GCPQ +AK+G+YG++L DDW L+ L+ H
Sbjct: 102 KCDAVDLNLGCPQGIAKKGNYGSFLMDDWKLVHRLIKHL 140
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 6/61 (9%)
Query: 48 LVVHFSWVSKNGP--LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTE 105
L+V F N P L +A+ CD +D+N+GCPQ +AK+G+YG++L DDW L+
Sbjct: 80 LIVQFC---ANDPEYLLQAARLVAD-KCDAVDLNLGCPQGIAKKGNYGSFLMDDWKLVHR 135
Query: 106 L 106
L
Sbjct: 136 L 136
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 188 HCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224
CD D+N+GCPQ +AK+G+YG++L DDW L+ L K
Sbjct: 102 KCDAVDLNLGCPQGIAKKGNYGSFLMDDWKLVHRLIK 138
>gi|255725686|ref|XP_002547772.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240135663|gb|EER35217.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 252
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L AA+ E CD +DIN+GCPQ +A++G YGA+L DDW L+ L+
Sbjct: 94 VQFCANDPDYLLTAARFIEDQCDAVDINLGCPQGIARKGRYGAFLMDDWELIHKLI 149
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 38/61 (62%), Gaps = 6/61 (9%)
Query: 48 LVVHFSWVSKNGP--LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTE 105
LVV F N P L FI E CD +DIN+GCPQ +A++G YGA+L DDW L+ +
Sbjct: 92 LVVQFC---ANDPDYLLTAARFI-EDQCDAVDINLGCPQGIARKGRYGAFLMDDWELIHK 147
Query: 106 L 106
L
Sbjct: 148 L 148
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +DIN+GCPQ +A++G YGA+L DDW L+ +L+
Sbjct: 112 EDQCDAVDINLGCPQGIARKGRYGAFLMDDWELIHKLI 149
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
E CD DIN+GCPQ +A++G YGA+L DDW L+ +L
Sbjct: 112 EDQCDAVDINLGCPQGIARKGRYGAFLMDDWELIHKL 148
>gi|254579200|ref|XP_002495586.1| ZYRO0B14872p [Zygosaccharomyces rouxii]
gi|238938476|emb|CAR26653.1| ZYRO0B14872p [Zygosaccharomyces rouxii]
Length = 406
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 42/56 (75%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND + L +AA+L + CD +D+N+GCPQ +AK+GHYG++L ++W L+ L+
Sbjct: 82 VQFCANDPEYLLQAARLVQDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLVHKLI 137
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 31/39 (79%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ CD +D+N+GCPQ +AK+GHYG++L ++W L+ +L+
Sbjct: 99 VQDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLVHKLI 137
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 48 LVVHFSWVSKNGPLFM-GPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
LVV F N P ++ + + CD +D+N+GCPQ +AK+GHYG++L ++W L+ +L
Sbjct: 80 LVVQFC---ANDPEYLLQAARLVQDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLVHKL 136
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 30/39 (76%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ + CD D+N+GCPQ +AK+GHYG++L ++W L+ +L
Sbjct: 98 LVQDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLVHKL 136
>gi|71402428|ref|XP_804129.1| dihydrouridine synthase (Dus) [Trypanosoma cruzi strain CL Brener]
gi|70866933|gb|EAN82278.1| dihydrouridine synthase (Dus), putative [Trypanosoma cruzi]
Length = 547
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 42/57 (73%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
+ FCGND+ L AA+ E C+ +D+N+GCPQ +A+RGHYG++L +DW + N+++
Sbjct: 183 VQFCGNDADTLLAAARHVEDDCEAVDVNLGCPQGIARRGHYGSFLMEDWDRVHNILH 239
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 26/32 (81%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 42
E C+ +D+N+GCPQ +A+RGHYG++L +DW
Sbjct: 200 VEDDCEAVDVNLGCPQGIARRGHYGSFLMEDW 231
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 26/31 (83%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 100
E C+ +D+N+GCPQ +A+RGHYG++L +DW
Sbjct: 201 EDDCEAVDVNLGCPQGIARRGHYGSFLMEDW 231
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDW 216
E C+ D+N+GCPQ +A+RGHYG++L +DW
Sbjct: 201 EDDCEAVDVNLGCPQGIARRGHYGSFLMEDW 231
>gi|344302627|gb|EGW32901.1| hypothetical protein SPAPADRAFT_136292 [Spathaspora passalidarum
NRRL Y-27907]
Length = 432
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 42/58 (72%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC ND + L +AAKL E CD ID+N+GCPQ +A++G+YGA+L + W L+ L+ +
Sbjct: 86 VQFCANDPEYLLKAAKLVEDKCDAIDLNLGCPQGIARKGNYGAFLMEKWDLIHKLIRT 143
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 48 LVVHFSWVSKNGPLFM-GPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
LVV F N P ++ + E CD ID+N+GCPQ +A++G+YGA+L + W L+ +L
Sbjct: 84 LVVQFC---ANDPEYLLKAAKLVEDKCDAIDLNLGCPQGIARKGNYGAFLMEKWDLIHKL 140
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD ID+N+GCPQ +A++G+YGA+L + W L+ +L+
Sbjct: 103 VEDKCDAIDLNLGCPQGIARKGNYGAFLMEKWDLIHKLI 141
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 29/39 (74%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E CD D+N+GCPQ +A++G+YGA+L + W L+ +L
Sbjct: 102 LVEDKCDAIDLNLGCPQGIARKGNYGAFLMEKWDLIHKL 140
>gi|327293319|ref|XP_003231356.1| dihydrouridine synthase [Trichophyton rubrum CBS 118892]
gi|326466472|gb|EGD91925.1| dihydrouridine synthase [Trichophyton rubrum CBS 118892]
Length = 456
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L +AA+ E +CD +D+N+GCPQ +AK+GHYGA+LQ+D L+ L+ N
Sbjct: 50 VQFCANDPDELLKAARHVEEYCDAVDLNLGCPQGIAKKGHYGAFLQEDPDLIYKLI---N 106
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 107 KLHNELSIP 115
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 32/39 (82%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E +CD +D+N+GCPQ +AK+GHYGA+LQ+D L+ +L+
Sbjct: 67 VEEYCDAVDLNLGCPQGIAKKGHYGAFLQEDPDLIYKLI 105
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 31/37 (83%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
E +CD +D+N+GCPQ +AK+GHYGA+LQ+D L+ +L
Sbjct: 68 EEYCDAVDLNLGCPQGIAKKGHYGAFLQEDPDLIYKL 104
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 30/37 (81%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
E +CD D+N+GCPQ +AK+GHYGA+LQ+D L+ +L
Sbjct: 68 EEYCDAVDLNLGCPQGIAKKGHYGAFLQEDPDLIYKL 104
>gi|389747721|gb|EIM88899.1| FMN-linked oxidoreductase [Stereum hirsutum FP-91666 SS1]
Length = 263
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 48/74 (64%), Gaps = 5/74 (6%)
Query: 105 ELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL- 163
ELG + + + CGN+ +++ +AAK CDG+D+N+GCPQ A+ GHYGAYL
Sbjct: 44 ELGMQVERPVV---VQVCGNEVESVVQAAKKMVGLCDGVDLNLGCPQEAAREGHYGAYLL 100
Query: 164 -QDDWPLLTNLVYS 176
Q DWPL+ +LV S
Sbjct: 101 GQKDWPLVESLVSS 114
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 29/37 (78%), Gaps = 2/37 (5%)
Query: 15 CDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELV 49
CDG+D+N+GCPQ A+ GHYGAYL Q DWPL+ LV
Sbjct: 76 CDGVDLNLGCPQEAAREGHYGAYLLGQKDWPLVESLV 112
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 73 CDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELGFKTRSHM---CGHSLMFCGNDSK 127
CDG+D+N+GCPQ A+ GHYGAYL Q DWPL+ L + L C
Sbjct: 76 CDGVDLNLGCPQEAAREGHYGAYLLGQKDWPLVESLVSSLVQSLPIPVSTKLRLCQPTPS 135
Query: 128 NLTEAAKL 135
+T A +L
Sbjct: 136 TVTLAKRL 143
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/36 (63%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 189 CDGNDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 222
CDG D+N+GCPQ A+ GHYGAYL Q DWPL+ L
Sbjct: 76 CDGVDLNLGCPQEAAREGHYGAYLLGQKDWPLVESL 111
>gi|401827139|ref|XP_003887662.1| tRNA-dihydrouridine synthase [Encephalitozoon hellem ATCC 50504]
gi|392998668|gb|AFM98681.1| tRNA-dihydrouridine synthase [Encephalitozoon hellem ATCC 50504]
Length = 340
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 40/56 (71%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ CGN + + EAA + + HCD IDIN GCPQ VA++G+YGAYLQ++W L +V
Sbjct: 72 IQICGNSPEVMLEAALIMQDHCDAIDINFGCPQRVARKGNYGAYLQENWGLTEKIV 127
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLF 62
+ HCD IDIN GCPQ VA++G+YGAYLQ++W LTE +V + + P+F
Sbjct: 90 QDHCDAIDINFGCPQRVARKGNYGAYLQENWG-LTEKIVKVLSTNLSVPVF 139
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 8/77 (10%)
Query: 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
R + +D PL+ + + N P + + I + HCD IDIN GCPQ VA++
Sbjct: 57 RNQWYTTSPEDRPLVIQ-------ICGNSPEVMLEAALIMQDHCDAIDINFGCPQRVARK 109
Query: 90 GHYGAYLQDDWPLLTEL 106
G+YGAYLQ++W L ++
Sbjct: 110 GNYGAYLQENWGLTEKI 126
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 156 RGHYGAYLQDDWPLLTNLV-YSPNMV--HFVIAEPHCDGNDINIGCPQMVAKRGHYGAYL 212
R + +D PL+ + SP ++ +I + HCD DIN GCPQ VA++G+YGAYL
Sbjct: 57 RNQWYTTSPEDRPLVIQICGNSPEVMLEAALIMQDHCDAIDINFGCPQRVARKGNYGAYL 116
Query: 213 QDDWPLLTELGKM 225
Q++W L ++ K+
Sbjct: 117 QENWGLTEKIVKV 129
>gi|358391842|gb|EHK41246.1| hypothetical protein TRIATDRAFT_78073 [Trichoderma atroviride IMI
206040]
Length = 539
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + L AAK P+CD +D+N+GCPQ +A++G YGA+LQ+D L+ L+ N
Sbjct: 106 VQFCANDPEALLSAAKHVAPYCDAVDLNLGCPQGIARKGRYGAFLQEDQDLIFRLI---N 162
Query: 179 MVHFVIAEP 187
++H ++ P
Sbjct: 163 ILHKELSIP 171
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 30/37 (81%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +A++G YGA+LQ+D L+ L+
Sbjct: 125 PYCDAVDLNLGCPQGIARKGRYGAFLQEDQDLIFRLI 161
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 29/36 (80%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P+CD +D+N+GCPQ +A++G YGA+LQ+D L+ L
Sbjct: 125 PYCDAVDLNLGCPQGIARKGRYGAFLQEDQDLIFRL 160
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +A++G YGA+LQ+D L+ L
Sbjct: 125 PYCDAVDLNLGCPQGIARKGRYGAFLQEDQDLIFRL 160
>gi|226295110|gb|EEH50530.1| tRNA-dihydrouridine synthase [Paracoccidioides brasiliensis Pb18]
Length = 556
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L AA+ EP CD +D+N+GCPQ +A++GHYG++LQ++ L+ L+ N
Sbjct: 117 VQFCANDPDELLHAARTVEPFCDAVDLNLGCPQGIARKGHYGSFLQEEPELIYKLI---N 173
Query: 179 MVHFVIAEP 187
++H ++ P
Sbjct: 174 ILHTHLSIP 182
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 32/38 (84%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
EP CD +D+N+GCPQ +A++GHYG++LQ++ L+ +L+
Sbjct: 135 EPFCDAVDLNLGCPQGIARKGHYGSFLQEEPELIYKLI 172
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 31/37 (83%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
EP CD +D+N+GCPQ +A++GHYG++LQ++ L+ +L
Sbjct: 135 EPFCDAVDLNLGCPQGIARKGHYGSFLQEEPELIYKL 171
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 30/37 (81%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
EP CD D+N+GCPQ +A++GHYG++LQ++ L+ +L
Sbjct: 135 EPFCDAVDLNLGCPQGIARKGHYGSFLQEEPELIYKL 171
>gi|225677726|gb|EEH16010.1| tRNA-dihydrouridine synthase C [Paracoccidioides brasiliensis Pb03]
Length = 526
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L AA+ EP CD +D+N+GCPQ +A++GHYG++LQ++ L+ L+ N
Sbjct: 117 VQFCANDPDELLHAARTVEPFCDAVDLNLGCPQGIARKGHYGSFLQEEPELIYKLI---N 173
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 174 TLHTQLSIP 182
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 32/39 (82%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
EP CD +D+N+GCPQ +A++GHYG++LQ++ L+ +L+
Sbjct: 134 VEPFCDAVDLNLGCPQGIARKGHYGSFLQEEPELIYKLI 172
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 31/37 (83%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
EP CD +D+N+GCPQ +A++GHYG++LQ++ L+ +L
Sbjct: 135 EPFCDAVDLNLGCPQGIARKGHYGSFLQEEPELIYKL 171
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 30/37 (81%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
EP CD D+N+GCPQ +A++GHYG++LQ++ L+ +L
Sbjct: 135 EPFCDAVDLNLGCPQGIARKGHYGSFLQEEPELIYKL 171
>gi|342885883|gb|EGU85835.1| hypothetical protein FOXB_03683 [Fusarium oxysporum Fo5176]
Length = 476
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + L AAK P+CD +D+N+GCPQ +A++G YGA+LQ+D L+ L+ N
Sbjct: 76 VQFCANDPEALLSAAKQVAPYCDAVDLNLGCPQGIARKGKYGAFLQEDQDLIFRLI---N 132
Query: 179 MVHFVIAEP 187
++H + P
Sbjct: 133 ILHKELPVP 141
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 30/37 (81%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +A++G YGA+LQ+D L+ L+
Sbjct: 95 PYCDAVDLNLGCPQGIARKGKYGAFLQEDQDLIFRLI 131
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 29/36 (80%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P+CD +D+N+GCPQ +A++G YGA+LQ+D L+ L
Sbjct: 95 PYCDAVDLNLGCPQGIARKGKYGAFLQEDQDLIFRL 130
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +A++G YGA+LQ+D L+ L
Sbjct: 95 PYCDAVDLNLGCPQGIARKGKYGAFLQEDQDLIFRL 130
>gi|453088043|gb|EMF16084.1| FMN-linked oxidoreductase [Mycosphaerella populorum SO2202]
Length = 584
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 40/56 (71%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND ++A++ P CD +D+N+GCPQ +AKRG+YGA+LQ+DW + L+
Sbjct: 115 VQFCANDPDVFLKSAQMVAPFCDAVDLNLGCPQGIAKRGNYGAFLQEDWDTIYKLI 170
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 32 GHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGH 91
G YL + + L V F + + +F+ + P CD +D+N+GCPQ +AKRG+
Sbjct: 97 GEADRYLDGNPNMDRPLFVQF--CANDPDVFLKSAQMVAPFCDAVDLNLGCPQGIAKRGN 154
Query: 92 YGAYLQDDWPLLTEL 106
YGA+LQ+DW + +L
Sbjct: 155 YGAFLQEDWDTIYKL 169
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 31/37 (83%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P CD +D+N+GCPQ +AKRG+YGA+LQ+DW + +L+
Sbjct: 134 PFCDAVDLNLGCPQGIAKRGNYGAFLQEDWDTIYKLI 170
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query: 100 WPLLTE--LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGID--INIGCP---QM 152
W LLT L + RS + ++ MF +K ++ K H + + I + P +
Sbjct: 36 WRLLTRSFLPAELRSSILAYTPMF---HAKLFSDNPKYRANHFEPLKPPITMADPPDAEH 92
Query: 153 VAKRGHYGAYLQD----DWPLLTNLVYSPNMVHFVIAE---PHCDGNDINIGCPQMVAKR 205
+ G YL D PL + V A+ P CD D+N+GCPQ +AKR
Sbjct: 93 IKTMGEADRYLDGNPNMDRPLFVQFCANDPDVFLKSAQMVAPFCDAVDLNLGCPQGIAKR 152
Query: 206 GHYGAYLQDDWPLLTEL 222
G+YGA+LQ+DW + +L
Sbjct: 153 GNYGAFLQEDWDTIYKL 169
>gi|391337706|ref|XP_003743206.1| PREDICTED: tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like
[Metaseiulus occidentalis]
Length = 475
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + ++A L CD +D+N+GCPQ +A GH+GA+LQD+W L+T+++
Sbjct: 81 VQFCANDPEVFSQACGLVADRCDAVDLNLGCPQAIASAGHFGAFLQDEWELITSMISRAR 140
Query: 179 MVH 181
H
Sbjct: 141 RDH 143
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 36 AYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAY 95
A +D PL+ + + + + +F + CD +D+N+GCPQ +A GH+GA+
Sbjct: 71 ATCAEDRPLIVQ------FCANDPEVFSQACGLVADRCDAVDLNLGCPQAIASAGHFGAF 124
Query: 96 LQDDWPLLTELGFKTR 111
LQD+W L+T + + R
Sbjct: 125 LQDEWELITSMISRAR 140
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPL 61
CD +D+N+GCPQ +A GH+GA+LQD+W L+T ++ N P+
Sbjct: 101 RCDAVDLNLGCPQAIASAGHFGAFLQDEWELITSMISRARRDHPNLPI 148
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 188 HCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMA 226
CD D+N+GCPQ +A GH+GA+LQD+W L+T + A
Sbjct: 101 RCDAVDLNLGCPQAIASAGHFGAFLQDEWELITSMISRA 139
>gi|396081789|gb|AFN83404.1| tRNA-dihydrouridine synthase [Encephalitozoon romaleae SJ-2008]
Length = 340
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 39/56 (69%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ CGN + + EAA + + HCD IDIN GCPQ VA++G YGAYLQ++W L +V
Sbjct: 72 IQICGNSPEAMLEAALIMQDHCDAIDINFGCPQRVARKGGYGAYLQENWDLTEKIV 127
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
R + ++D PL+ + + N P + I + HCD IDIN GCPQ VA++
Sbjct: 57 RNQWYTTSEEDRPLIIQ-------ICGNSPEAMLEAALIMQDHCDAIDINFGCPQRVARK 109
Query: 90 GHYGAYLQDDWPLLTELGFKTRS 112
G YGAYLQ++W LTE KT S
Sbjct: 110 GGYGAYLQENWD-LTEKIVKTLS 131
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHC 73
HCD IDIN GCPQ VA++G YGAYLQ++W L ++V +S N + P+F
Sbjct: 92 HCDAIDINFGCPQRVARKGGYGAYLQENWDLTEKIV---KTLSTNLSI---PVFCKIRVF 145
Query: 74 DGIDINIGCPQMVAKRG 90
+ I+ + +M+ K G
Sbjct: 146 ESIEKTVEYTRMIEKAG 162
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 156 RGHYGAYLQDDWPLLTNLV-YSPN--MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYL 212
R + ++D PL+ + SP + +I + HCD DIN GCPQ VA++G YGAYL
Sbjct: 57 RNQWYTTSEEDRPLIIQICGNSPEAMLEAALIMQDHCDAIDINFGCPQRVARKGGYGAYL 116
Query: 213 QDDWPLLTELGK 224
Q++W L ++ K
Sbjct: 117 QENWDLTEKIVK 128
>gi|366987597|ref|XP_003673565.1| hypothetical protein NCAS_0A06240 [Naumovozyma castellii CBS 4309]
gi|342299428|emb|CCC67182.1| hypothetical protein NCAS_0A06240 [Naumovozyma castellii CBS 4309]
Length = 427
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 42/58 (72%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC ND + L AAKL + CD +D+N+GCPQ +A++GHYG++L ++W L+ L+ +
Sbjct: 83 VQFCANDPEYLLTAAKLVQDKCDAVDLNLGCPQGIARKGHYGSFLMEEWDLIHKLIKT 140
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 31/39 (79%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ CD +D+N+GCPQ +A++GHYG++L ++W L+ +L+
Sbjct: 100 VQDKCDAVDLNLGCPQGIARKGHYGSFLMEEWDLIHKLI 138
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
LVV F + + + + + CD +D+N+GCPQ +A++GHYG++L ++W L+ +L
Sbjct: 81 LVVQF--CANDPEYLLTAAKLVQDKCDAVDLNLGCPQGIARKGHYGSFLMEEWDLIHKL 137
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 31/41 (75%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224
+ + CD D+N+GCPQ +A++GHYG++L ++W L+ +L K
Sbjct: 99 LVQDKCDAVDLNLGCPQGIARKGHYGSFLMEEWDLIHKLIK 139
>gi|440791671|gb|ELR12909.1| tRNAdihydrouridine synthase 1-like protein [Acanthamoeba
castellanii str. Neff]
Length = 430
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 42/58 (72%), Gaps = 2/58 (3%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD--WPLLTNLV 174
+ FCGND + L +AAK E CD +D+N+GCPQ +AKRG+YG++L D WPLL +V
Sbjct: 156 VQFCGNDPEVLLKAAKFVENDCDAVDLNLGCPQGIAKRGNYGSFLLDKCYWPLLYAMV 213
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 26 QMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQM 85
++ A+ Y P LVV F + + + E CD +D+N+GCPQ
Sbjct: 132 RLFAEEAKYRQMEFSTCPEDRPLVVQF--CGNDPEVLLKAAKFVENDCDAVDLNLGCPQG 189
Query: 86 VAKRGHYGAYLQDD--WPLL 103
+AKRG+YG++L D WPLL
Sbjct: 190 IAKRGNYGSFLLDKCYWPLL 209
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDD--WPLLTELV 49
E CD +D+N+GCPQ +AKRG+YG++L D WPLL +V
Sbjct: 173 VENDCDAVDLNLGCPQGIAKRGNYGSFLLDKCYWPLLYAMV 213
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD--WPLL 219
E CD D+N+GCPQ +AKRG+YG++L D WPLL
Sbjct: 172 FVENDCDAVDLNLGCPQGIAKRGNYGSFLLDKCYWPLL 209
>gi|358378951|gb|EHK16632.1| hypothetical protein TRIVIDRAFT_41234 [Trichoderma virens Gv29-8]
Length = 528
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L AA+ P+CD +D+N+GCPQ +A++GHYGA+LQ+D L+ L+ N
Sbjct: 106 VQFCANDPAALLSAAQHVVPYCDAVDLNLGCPQGIARKGHYGAFLQEDQDLIFKLI---N 162
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 163 TLHKELSIP 171
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 32/37 (86%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +A++GHYGA+LQ+D L+ +L+
Sbjct: 125 PYCDAVDLNLGCPQGIARKGHYGAFLQEDQDLIFKLI 161
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 31/36 (86%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P+CD +D+N+GCPQ +A++GHYGA+LQ+D L+ +L
Sbjct: 125 PYCDAVDLNLGCPQGIARKGHYGAFLQEDQDLIFKL 160
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 30/36 (83%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +A++GHYGA+LQ+D L+ +L
Sbjct: 125 PYCDAVDLNLGCPQGIARKGHYGAFLQEDQDLIFKL 160
>gi|242208769|ref|XP_002470234.1| predicted protein [Postia placenta Mad-698-R]
gi|220730684|gb|EED84537.1| predicted protein [Postia placenta Mad-698-R]
Length = 260
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYS 176
+ CGND + + A K + HCD ID N+GCPQ A+ HYGAYL Q+DWPL+ N+ S
Sbjct: 60 VQLCGNDPELVVRAGKQVQSHCDAIDFNLGCPQEAARDAHYGAYLLGQNDWPLVENIAAS 119
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELGFKTRSHM---CGHSLMFCGN 124
+ HCD ID N+GCPQ A+ HYGAYL Q+DWPL+ + + + L C
Sbjct: 78 QSHCDAIDFNLGCPQEAARDAHYGAYLLGQNDWPLVENIAASMSNSLTVPVSAKLRLCQP 137
Query: 125 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGA 161
S L A +L H + + + +R GA
Sbjct: 138 ASATLDLARRLE--HAGASWVTLHARTVSVRRRRQGA 172
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELVVHFS 53
+ + HCD ID N+GCPQ A+ HYGAYL Q+DWPL+ + S
Sbjct: 76 QVQSHCDAIDFNLGCPQEAARDAHYGAYLLGQNDWPLVENIAASMS 121
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYL--QDDWPLLTELG 223
+ HCD D N+GCPQ A+ HYGAYL Q+DWPL+ +
Sbjct: 78 QSHCDAIDFNLGCPQEAARDAHYGAYLLGQNDWPLVENIA 117
>gi|324509339|gb|ADY43931.1| tRNA-dihydrouridine synthase 1-like protein [Ascaris suum]
Length = 503
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 3/63 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC N+ L A L E CDG+D+N+GCPQ++AKRGHYGAYL++D L+ +V +
Sbjct: 111 VQFCANEPHMLLTACLLVEDICDGVDLNLGCPQLIAKRGHYGAYLEEDLDLVCEMV---S 167
Query: 179 MVH 181
+VH
Sbjct: 168 LVH 170
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 26 QMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQ 84
Q+ K Y P L+V F N P + + + E CDG+D+N+GCPQ
Sbjct: 87 QLFVKDLTYRRSALSSCPSDRPLIVQFC---ANEPHMLLTACLLVEDICDGVDLNLGCPQ 143
Query: 85 MVAKRGHYGAYLQDDWPLLTELGFKTRSH 113
++AKRGHYGAYL++D L+ E+ SH
Sbjct: 144 LIAKRGHYGAYLEEDLDLVCEMVSLVHSH 172
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 33/39 (84%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CDG+D+N+GCPQ++AKRGHYGAYL++D L+ E+V
Sbjct: 128 VEDICDGVDLNLGCPQLIAKRGHYGAYLEEDLDLVCEMV 166
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 12/58 (20%)
Query: 177 PNMVHFVIAEPH------------CDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P +V F EPH CDG D+N+GCPQ++AKRGHYGAYL++D L+ E+
Sbjct: 108 PLIVQFCANEPHMLLTACLLVEDICDGVDLNLGCPQLIAKRGHYGAYLEEDLDLVCEM 165
>gi|408397470|gb|EKJ76612.1| hypothetical protein FPSE_03162 [Fusarium pseudograminearum CS3096]
Length = 506
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L AAK P+CD +D+N+GCPQ +A++G YGA+LQ+D L+ L+ N
Sbjct: 106 VQFCANDPDALLSAAKQVAPYCDAVDLNLGCPQGIARKGKYGAFLQEDQDLIFRLI---N 162
Query: 179 MVHFVIAEP 187
++H + P
Sbjct: 163 ILHKELPVP 171
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 30/37 (81%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +A++G YGA+LQ+D L+ L+
Sbjct: 125 PYCDAVDLNLGCPQGIARKGKYGAFLQEDQDLIFRLI 161
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 29/36 (80%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P+CD +D+N+GCPQ +A++G YGA+LQ+D L+ L
Sbjct: 125 PYCDAVDLNLGCPQGIARKGKYGAFLQEDQDLIFRL 160
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +A++G YGA+LQ+D L+ L
Sbjct: 125 PYCDAVDLNLGCPQGIARKGKYGAFLQEDQDLIFRL 160
>gi|46125679|ref|XP_387393.1| hypothetical protein FG07217.1 [Gibberella zeae PH-1]
Length = 510
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L AAK P+CD +D+N+GCPQ +A++G YGA+LQ+D L+ L+ N
Sbjct: 106 VQFCANDPDALLSAAKQVAPYCDAVDLNLGCPQGIARKGKYGAFLQEDQDLIFRLI---N 162
Query: 179 MVHFVIAEP 187
++H + P
Sbjct: 163 ILHKELPVP 171
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 30/37 (81%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +A++G YGA+LQ+D L+ L+
Sbjct: 125 PYCDAVDLNLGCPQGIARKGKYGAFLQEDQDLIFRLI 161
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 29/36 (80%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P+CD +D+N+GCPQ +A++G YGA+LQ+D L+ L
Sbjct: 125 PYCDAVDLNLGCPQGIARKGKYGAFLQEDQDLIFRL 160
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +A++G YGA+LQ+D L+ L
Sbjct: 125 PYCDAVDLNLGCPQGIARKGKYGAFLQEDQDLIFRL 160
>gi|154282457|ref|XP_001542024.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150410204|gb|EDN05592.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 584
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC N+ +L +AA+ EP CD +D+N+GCPQ +A++GHYGA+LQ+ L+ L+ N
Sbjct: 120 VQFCANNPDDLLQAARAVEPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYELI---N 176
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 177 TLHTQLSIP 185
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 3 EGGRDRIETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLF 62
E R R +T DI+ G PQ + YL + L+V F + N
Sbjct: 78 EATRPRSKTHNPPAANDIDGGAPQ-----SNTIPYLDGNPSFDRPLIVQF--CANNPDDL 130
Query: 63 MGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ EP CD +D+N+GCPQ +A++GHYGA+LQ+ L+ EL
Sbjct: 131 LQAARAVEPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYEL 174
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 31/38 (81%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
EP CD +D+N+GCPQ +A++GHYGA+LQ+ L+ EL+
Sbjct: 138 EPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYELI 175
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 29/37 (78%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
EP CD D+N+GCPQ +A++GHYGA+LQ+ L+ EL
Sbjct: 138 EPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYEL 174
>gi|240274458|gb|EER37974.1| dihydrouridine synthase [Ajellomyces capsulatus H143]
Length = 545
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC N+ +L +AA+ EP CD +D+N+GCPQ +A++GHYGA+LQ+ L+ L+ N
Sbjct: 82 VQFCANNPDDLLQAARAVEPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYELI---N 138
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 139 TLHTQLSIP 147
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 6 RDRIETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGP 65
R + T P +GID G PQ + YL + L+V F + N +
Sbjct: 45 RSKTPTTPAANGIDG--GAPQ-----SNTVPYLDGNPSFDRPLIVQF--CANNPDDLLQA 95
Query: 66 LFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
EP CD +D+N+GCPQ +A++GHYGA+LQ+ L+ EL
Sbjct: 96 ARAVEPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYEL 136
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 31/38 (81%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
EP CD +D+N+GCPQ +A++GHYGA+LQ+ L+ EL+
Sbjct: 100 EPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYELI 137
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 29/37 (78%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
EP CD D+N+GCPQ +A++GHYGA+LQ+ L+ EL
Sbjct: 100 EPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYEL 136
>gi|367012726|ref|XP_003680863.1| hypothetical protein TDEL_0D00680 [Torulaspora delbrueckii]
gi|359748523|emb|CCE91652.1| hypothetical protein TDEL_0D00680 [Torulaspora delbrueckii]
Length = 427
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 41/56 (73%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND + L +AA+L + CD +D+N+GCPQ +A++G YG++L +DW L+ L+
Sbjct: 92 VQFCANDPEYLLQAARLVQDKCDAVDLNLGCPQGIARKGRYGSFLMEDWDLIHKLI 147
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ CD +D+N+GCPQ +A++G YG++L +DW L+ +L+
Sbjct: 109 VQDKCDAVDLNLGCPQGIARKGRYGSFLMEDWDLIHKLI 147
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 48 LVVHFSWVSKNGPLFM-GPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
LVV F N P ++ + + CD +D+N+GCPQ +A++G YG++L +DW L+ +L
Sbjct: 90 LVVQFC---ANDPEYLLQAARLVQDKCDAVDLNLGCPQGIARKGRYGSFLMEDWDLIHKL 146
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 29/39 (74%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ + CD D+N+GCPQ +A++G YG++L +DW L+ +L
Sbjct: 108 LVQDKCDAVDLNLGCPQGIARKGRYGSFLMEDWDLIHKL 146
>gi|440789875|gb|ELR11166.1| tRNAdihydrouridine synthase 1-like protein, putative [Acanthamoeba
castellanii str. Neff]
Length = 333
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 3/71 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FCGND + + +AA L + CD +DIN GCPQ A++G++GAYL +WPL+ +V +
Sbjct: 63 VQFCGNDPEEILQAALLVQDECDAVDINFGCPQKCARKGNFGAYLLHNWPLMEAIV---S 119
Query: 179 MVHFVIAEPHC 189
+H ++ P C
Sbjct: 120 TLHKNLSIPVC 130
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
CD +DIN GCPQ A++G++GAYL +WPL+ +V
Sbjct: 83 ECDAVDINFGCPQKCARKGNFGAYLLHNWPLMEAIV 118
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 67 FIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ + CD +DIN GCPQ A++G++GAYL +WPL+ +
Sbjct: 78 LLVQDECDAVDINFGCPQKCARKGNFGAYLLHNWPLMEAI 117
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
++ + CD DIN GCPQ A++G++GAYL +WPL+ +
Sbjct: 78 LLVQDECDAVDINFGCPQKCARKGNFGAYLLHNWPLMEAI 117
>gi|169599118|ref|XP_001792982.1| hypothetical protein SNOG_02375 [Phaeosphaeria nodorum SN15]
gi|160704540|gb|EAT90587.2| hypothetical protein SNOG_02375 [Phaeosphaeria nodorum SN15]
Length = 491
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSP 177
++ FC ND + AAK P CD +D+N+GCPQ +AKRG YGA+LQ+D L+ ++
Sbjct: 50 TVQFCSNDPDDFLRAAKHVAPFCDAVDLNLGCPQGIAKRGKYGAFLQEDQGLIARMI--- 106
Query: 178 NMVHFVIAEP 187
N +H + P
Sbjct: 107 NKLHEELEVP 116
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 29/37 (78%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P CD +D+N+GCPQ +AKRG YGA+LQ+D L+ ++
Sbjct: 70 PFCDAVDLNLGCPQGIAKRGKYGAFLQEDQGLIARMI 106
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P CD +D+N+GCPQ +AKRG YGA+LQ+D L+ +
Sbjct: 70 PFCDAVDLNLGCPQGIAKRGKYGAFLQEDQGLIARM 105
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P CD D+N+GCPQ +AKRG YGA+LQ+D L+ +
Sbjct: 70 PFCDAVDLNLGCPQGIAKRGKYGAFLQEDQGLIARM 105
>gi|341882002|gb|EGT37937.1| hypothetical protein CAEBREN_17932 [Caenorhabditis brenneri]
Length = 525
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 40/58 (68%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC N + A +L E CDG+D+N+GCPQMVAKRG YG++LQD+ L+ +V +
Sbjct: 130 VQFCANKVETFLAACRLVEDVCDGVDLNLGCPQMVAKRGRYGSWLQDEVDLICEMVSA 187
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRG 90
R + A ++ D PL+ + + + F+ + E CDG+D+N+GCPQMVAKRG
Sbjct: 115 RRNSLALVKADRPLIVQ------FCANKVETFLAACRLVEDVCDGVDLNLGCPQMVAKRG 168
Query: 91 HYGAYLQDDWPLLTELGFKTRSH 113
YG++LQD+ L+ E+ R +
Sbjct: 169 RYGSWLQDEVDLICEMVSAVRDY 191
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 7/72 (9%)
Query: 156 RGHYGAYLQDDWPLLTNLVYSPNMVHFVIA-----EPHCDGNDINIGCPQMVAKRGHYGA 210
R + A ++ D PL+ + N V +A E CDG D+N+GCPQMVAKRG YG+
Sbjct: 115 RRNSLALVKADRPLIVQ--FCANKVETFLAACRLVEDVCDGVDLNLGCPQMVAKRGRYGS 172
Query: 211 YLQDDWPLLTEL 222
+LQD+ L+ E+
Sbjct: 173 WLQDEVDLICEM 184
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 32/38 (84%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CDG+D+N+GCPQMVAKRG YG++LQD+ L+ E+V
Sbjct: 148 EDVCDGVDLNLGCPQMVAKRGRYGSWLQDEVDLICEMV 185
>gi|308499933|ref|XP_003112152.1| hypothetical protein CRE_29758 [Caenorhabditis remanei]
gi|308268633|gb|EFP12586.1| hypothetical protein CRE_29758 [Caenorhabditis remanei]
Length = 529
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 40/58 (68%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC N + A +L E CDG+D+N+GCPQMVAKRG YG++LQD+ L+ +V +
Sbjct: 132 VQFCANKVETFLAACRLVEDVCDGVDLNLGCPQMVAKRGRYGSWLQDEVDLICEMVSA 189
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 35 GAYLQDDWPLLTE---LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGH 91
G Y ++ L+ LVV F + F+ + E CDG+D+N+GCPQMVAKRG
Sbjct: 114 GTYRRNSLALVKADRPLVVQF--CANKVETFLAACRLVEDVCDGVDLNLGCPQMVAKRGR 171
Query: 92 YGAYLQDDWPLLTELGFKTRSH 113
YG++LQD+ L+ E+ R +
Sbjct: 172 YGSWLQDEVDLICEMVSAVRDY 193
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 7/72 (9%)
Query: 156 RGHYGAYLQDDWPLLTNLVYSPNMVHFVIA-----EPHCDGNDINIGCPQMVAKRGHYGA 210
R + A ++ D PL+ + N V +A E CDG D+N+GCPQMVAKRG YG+
Sbjct: 117 RRNSLALVKADRPLVVQ--FCANKVETFLAACRLVEDVCDGVDLNLGCPQMVAKRGRYGS 174
Query: 211 YLQDDWPLLTEL 222
+LQD+ L+ E+
Sbjct: 175 WLQDEVDLICEM 186
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 32/39 (82%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CDG+D+N+GCPQMVAKRG YG++LQD+ L+ E+V
Sbjct: 149 VEDVCDGVDLNLGCPQMVAKRGRYGSWLQDEVDLICEMV 187
>gi|449329553|gb|AGE95824.1| hypothetical protein ECU07_1610 [Encephalitozoon cuniculi]
Length = 341
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ CGN + + EAA + + HCD ID+N GCPQ VA++G YGAYLQ++W L +V
Sbjct: 72 VQICGNSPEVMLEAALIIQDHCDAIDVNFGCPQKVARKGGYGAYLQENWKLTEEIV 127
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 39 QDDWPLLTELVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 97
+ D PL+ + + N P + + I + HCD ID+N GCPQ VA++G YGAYLQ
Sbjct: 65 EGDRPLVVQ-------ICGNSPEVMLEAALIIQDHCDAIDVNFGCPQKVARKGGYGAYLQ 117
Query: 98 DDWPLLTEL 106
++W L E+
Sbjct: 118 ENWKLTEEI 126
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLF 62
+ HCD ID+N GCPQ VA++G YGAYLQ++W L E+V S N P+F
Sbjct: 90 QDHCDAIDVNFGCPQKVARKGGYGAYLQENWKLTEEIVKVLS-SGLNVPVF 139
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 164 QDDWPLLTNLV-YSPNMV--HFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLT 220
+ D PL+ + SP ++ +I + HCD D+N GCPQ VA++G YGAYLQ++W L
Sbjct: 65 EGDRPLVVQICGNSPEVMLEAALIIQDHCDAIDVNFGCPQKVARKGGYGAYLQENWKLTE 124
Query: 221 ELGKM 225
E+ K+
Sbjct: 125 EIVKV 129
>gi|341883697|gb|EGT39632.1| hypothetical protein CAEBREN_09627 [Caenorhabditis brenneri]
Length = 525
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 40/58 (68%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC N + A +L E CDG+D+N+GCPQMVAKRG YG++LQD+ L+ +V +
Sbjct: 130 VQFCANKVETFLAACRLVEDVCDGVDLNLGCPQMVAKRGRYGSWLQDEVDLICEMVSA 187
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRG 90
R + A ++ D PL+ + + + F+ + E CDG+D+N+GCPQMVAKRG
Sbjct: 115 RRNSLALVKADRPLIVQ------FCANKVETFLAACRLVEDVCDGVDLNLGCPQMVAKRG 168
Query: 91 HYGAYLQDDWPLLTELGFKTRSH 113
YG++LQD+ L+ E+ R +
Sbjct: 169 RYGSWLQDEVDLICEMVSAVRDY 191
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 7/72 (9%)
Query: 156 RGHYGAYLQDDWPLLTNLVYSPNMVHFVIA-----EPHCDGNDINIGCPQMVAKRGHYGA 210
R + A ++ D PL+ + N V +A E CDG D+N+GCPQMVAKRG YG+
Sbjct: 115 RRNSLALVKADRPLIVQ--FCANKVETFLAACRLVEDVCDGVDLNLGCPQMVAKRGRYGS 172
Query: 211 YLQDDWPLLTEL 222
+LQD+ L+ E+
Sbjct: 173 WLQDEVDLICEM 184
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/38 (63%), Positives = 32/38 (84%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CDG+D+N+GCPQMVAKRG YG++LQD+ L+ E+V
Sbjct: 148 EDVCDGVDLNLGCPQMVAKRGRYGSWLQDEVDLICEMV 185
>gi|225561353|gb|EEH09633.1| tRNA-dihydrouridine synthase [Ajellomyces capsulatus G186AR]
Length = 583
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC N+ L +AA+ EP CD +D+N+GCPQ +A++GHYGA+LQ+ L+ L+ N
Sbjct: 120 VQFCANNPDELLQAARAVEPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYELI---N 176
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 177 TLHTQLSIP 185
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 7/104 (6%)
Query: 3 EGGRDRIETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLF 62
E R R +T DI+ G PQ + YL + L+V F + N
Sbjct: 78 EATRPRSKTPTTPAANDIDGGAPQ-----SNTIPYLDGNPSFDRPLIVQF--CANNPDEL 130
Query: 63 MGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ EP CD +D+N+GCPQ +A++GHYGA+LQ+ L+ EL
Sbjct: 131 LQAARAVEPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYEL 174
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 31/38 (81%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
EP CD +D+N+GCPQ +A++GHYGA+LQ+ L+ EL+
Sbjct: 138 EPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYELI 175
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 29/37 (78%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
EP CD D+N+GCPQ +A++GHYGA+LQ+ L+ EL
Sbjct: 138 EPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYEL 174
>gi|302916105|ref|XP_003051863.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732802|gb|EEU46150.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 509
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L AAK P+CD +D+N+GCPQ +A++G YGA+LQ+D L+ L+ N
Sbjct: 106 VQFCANDPDALLAAAKQVAPYCDAVDLNLGCPQGIARKGKYGAFLQEDQDLIFRLI---N 162
Query: 179 MVHFVIAEP 187
++H + P
Sbjct: 163 ILHKELPVP 171
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 31/40 (77%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ P+CD +D+N+GCPQ +A++G YGA+LQ+D L+ L+
Sbjct: 122 QVAPYCDAVDLNLGCPQGIARKGKYGAFLQEDQDLIFRLI 161
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 29/36 (80%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P+CD +D+N+GCPQ +A++G YGA+LQ+D L+ L
Sbjct: 125 PYCDAVDLNLGCPQGIARKGKYGAFLQEDQDLIFRL 160
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 28/36 (77%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +A++G YGA+LQ+D L+ L
Sbjct: 125 PYCDAVDLNLGCPQGIARKGKYGAFLQEDQDLIFRL 160
>gi|301100330|ref|XP_002899255.1| tRNA-dihydrouridine synthase, putative [Phytophthora infestans
T30-4]
gi|262104172|gb|EEY62224.1| tRNA-dihydrouridine synthase, putative [Phytophthora infestans
T30-4]
Length = 377
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 40/58 (68%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCGND K + AAK+ E HCD +D+N+GCPQ +A++GHYG++L D + V +
Sbjct: 83 VQFCGNDPKTVLAAAKMVEGHCDAVDLNLGCPQGIARKGHYGSFLMHDKETVKATVKT 140
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
E HCD +D+N+GCPQ +A++GHYG++L D + V S
Sbjct: 100 VEGHCDAVDLNLGCPQGIARKGHYGSFLMHDKETVKATVKTLS 142
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 48 LVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
LVV F N P + + E HCD +D+N+GCPQ +A++GHYG++L D
Sbjct: 81 LVVQFCG---NDPKTVLAAAKMVEGHCDAVDLNLGCPQGIARKGHYGSFLMHD 130
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD 215
+ E HCD D+N+GCPQ +A++GHYG++L D
Sbjct: 99 MVEGHCDAVDLNLGCPQGIARKGHYGSFLMHD 130
>gi|428172536|gb|EKX41444.1| hypothetical protein GUITHDRAFT_158205 [Guillardia theta CCMP2712]
Length = 244
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 19/97 (19%)
Query: 84 QMVAKRGHYGA-YLQD---DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH 139
+M HY YLQ D PL+ + FC N+ L +AAK E
Sbjct: 53 RMFVNNAHYRKDYLQSFEKDRPLIVQ---------------FCANNPNTLLQAAKYVEDS 97
Query: 140 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
CD +D+N+GCPQ +A+RG YG++L +DW + +LV +
Sbjct: 98 CDAVDLNLGCPQEIARRGRYGSFLMEDWDRIHDLVLT 134
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 26 QMVAKRGHYGA-YLQD---DWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIG 81
+M HY YLQ D PL+ + + + N + E CD +D+N+G
Sbjct: 53 RMFVNNAHYRKDYLQSFEKDRPLIVQ------FCANNPNTLLQAAKYVEDSCDAVDLNLG 106
Query: 82 CPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHM 114
CPQ +A+RG YG++L +DW + +L + +
Sbjct: 107 CPQEIARRGRYGSFLMEDWDRIHDLVLTMKQSL 139
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
E CD +D+N+GCPQ +A+RG YG++L +DW + +LV+
Sbjct: 94 VEDSCDAVDLNLGCPQEIARRGRYGSFLMEDWDRIHDLVL 133
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 151 QMVAKRGHYGA-YLQD---DWPLLTNL-VYSPNMV--HFVIAEPHCDGNDINIGCPQMVA 203
+M HY YLQ D PL+ +PN + E CD D+N+GCPQ +A
Sbjct: 53 RMFVNNAHYRKDYLQSFEKDRPLIVQFCANNPNTLLQAAKYVEDSCDAVDLNLGCPQEIA 112
Query: 204 KRGHYGAYLQDDWPLLTEL 222
+RG YG++L +DW + +L
Sbjct: 113 RRGRYGSFLMEDWDRIHDL 131
>gi|427799037|gb|JAA64970.1| Putative trna-dihydrouridine synthase, partial [Rhipicephalus
pulchellus]
Length = 476
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 40/56 (71%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L EA+++ C +D+N+GCPQ +A+ GHYGA+LQD+W LL+ +V
Sbjct: 77 VQFCANDPDVLFEASRMVVGQCCAVDLNLGCPQAIARAGHYGAFLQDEWDLLSRMV 132
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 29/36 (80%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
C +D+N+GCPQ +A+ GHYGA+LQD+W LL+ +V
Sbjct: 97 QCCAVDLNLGCPQAIARAGHYGAFLQDEWDLLSRMV 132
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 46 TELVVHFSWVSKNGP--LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 103
T L+V F N P LF + C +D+N+GCPQ +A+ GHYGA+LQD+W LL
Sbjct: 73 TPLIVQFC---ANDPDVLFEASRMVVG-QCCAVDLNLGCPQAIARAGHYGAFLQDEWDLL 128
Query: 104 TELGFKTRSHM 114
+ + K + +
Sbjct: 129 SRMVNKLHTEL 139
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 156 RGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEP---HCDGNDINIGCPQMVAKRGHYGAYL 212
R A +D PL+ + V F + C D+N+GCPQ +A+ GHYGA+L
Sbjct: 62 RKETLATCDEDTPLIVQFCANDPDVLFEASRMVVGQCCAVDLNLGCPQAIARAGHYGAFL 121
Query: 213 QDDWPLLTEL 222
QD+W LL+ +
Sbjct: 122 QDEWDLLSRM 131
>gi|299473005|emb|CBN77406.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 461
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 41/58 (70%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCG+D L +AK E CD ID+N+GCPQ +A++G YGA+L ++W LL ++V +
Sbjct: 145 VQFCGHDPALLLASAKFVEKECDAIDLNLGCPQGIARKGRYGAFLLEEWALLRDIVST 202
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
+D PL+ + H + L + E CD ID+N+GCPQ +A++G YGA+L ++
Sbjct: 139 EDRPLIVQFCGH------DPALLLASAKFVEKECDAIDLNLGCPQGIARKGRYGAFLLEE 192
Query: 100 WPLLTEL 106
W LL ++
Sbjct: 193 WALLRDI 199
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 35/47 (74%), Gaps = 3/47 (6%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKN 58
E CD ID+N+GCPQ +A++G YGA+L ++W LL ++V S ++KN
Sbjct: 163 EKECDAIDLNLGCPQGIARKGRYGAFLLEEWALLRDIV---STLAKN 206
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 165 DDWPLLTNLV-YSPNMV--HFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTE 221
+D PL+ + P ++ E CD D+N+GCPQ +A++G YGA+L ++W LL +
Sbjct: 139 EDRPLIVQFCGHDPALLLASAKFVEKECDAIDLNLGCPQGIARKGRYGAFLLEEWALLRD 198
Query: 222 L 222
+
Sbjct: 199 I 199
>gi|325090797|gb|EGC44107.1| tRNA-dihydrouridine synthase [Ajellomyces capsulatus H88]
Length = 583
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC N+ +L +AA+ EP CD +D+N+GCPQ +A++GHYGA+LQ+ L+ L+ N
Sbjct: 120 VQFCANNPDDLLQAARAVEPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYELI---N 176
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 177 TLHTHLSIP 185
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Query: 6 RDRIETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGP 65
R + T P +GID G PQ + YL + L+V F + N +
Sbjct: 83 RSKTPTTPAANGIDG--GAPQ-----SNTVPYLDGNPSFDRPLIVQF--CANNPDDLLQA 133
Query: 66 LFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMC 115
EP CD +D+N+GCPQ +A++GHYGA+LQ+ L+ EL +H+
Sbjct: 134 ARAVEPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYELINTLHTHLS 183
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 29/37 (78%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
EP CD D+N+GCPQ +A++GHYGA+LQ+ L+ EL
Sbjct: 138 EPFCDAVDLNLGCPQGIARKGHYGAFLQEHPDLIYEL 174
>gi|19074582|ref|NP_586088.1| similarity to HYPOTHETICAL PROTEIN YM10_yeast [Encephalitozoon
cuniculi GB-M1]
gi|19069224|emb|CAD25692.1| similarity to HYPOTHETICAL PROTEIN YM10_yeast [Encephalitozoon
cuniculi GB-M1]
Length = 341
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ CGN + + EAA + + HCD ID+N GCPQ VA++G YGAYLQ++W L +V
Sbjct: 72 VQICGNSPEVMLEAALIIQDHCDAIDVNFGCPQKVARKGGYGAYLQENWKLTGEIV 127
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 39 QDDWPLLTELVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 97
+ D PL+ + + N P + + I + HCD ID+N GCPQ VA++G YGAYLQ
Sbjct: 65 EGDRPLVVQ-------ICGNSPEVMLEAALIIQDHCDAIDVNFGCPQKVARKGGYGAYLQ 117
Query: 98 DDWPLLTEL 106
++W L E+
Sbjct: 118 ENWKLTGEI 126
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLF 62
+ HCD ID+N GCPQ VA++G YGAYLQ++W L E+V S N P+F
Sbjct: 90 QDHCDAIDVNFGCPQKVARKGGYGAYLQENWKLTGEIVKVLS-SGLNVPVF 139
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 164 QDDWPLLTNLV-YSPNMV--HFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLT 220
+ D PL+ + SP ++ +I + HCD D+N GCPQ VA++G YGAYLQ++W L
Sbjct: 65 EGDRPLVVQICGNSPEVMLEAALIIQDHCDAIDVNFGCPQKVARKGGYGAYLQENWKLTG 124
Query: 221 ELGKM 225
E+ K+
Sbjct: 125 EIVKV 129
>gi|407852637|gb|EKG06033.1| dihydrouridine synthase (Dus), putative [Trypanosoma cruzi]
Length = 548
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 42/57 (73%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
+ FCGND+ L AA+ E C+ +D+N+GCPQ +A+RG+YG++L +DW + N+++
Sbjct: 184 VQFCGNDADTLLAAARHVEDDCEAVDVNLGCPQGIARRGYYGSFLMEDWDRVHNILH 240
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 26/32 (81%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 42
E C+ +D+N+GCPQ +A+RG+YG++L +DW
Sbjct: 201 VEDDCEAVDVNLGCPQGIARRGYYGSFLMEDW 232
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 26/31 (83%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 100
E C+ +D+N+GCPQ +A+RG+YG++L +DW
Sbjct: 202 EDDCEAVDVNLGCPQGIARRGYYGSFLMEDW 232
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDW 216
E C+ D+N+GCPQ +A+RG+YG++L +DW
Sbjct: 202 EDDCEAVDVNLGCPQGIARRGYYGSFLMEDW 232
>gi|268566179|ref|XP_002639655.1| Hypothetical protein CBG12371 [Caenorhabditis briggsae]
Length = 527
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 39/58 (67%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC N A +L E CDG+D+N+GCPQMVAKRG YG++LQD+ L+ +V +
Sbjct: 132 VQFCANKVDTFLAACRLVEDVCDGVDLNLGCPQMVAKRGRYGSWLQDEVDLICEMVSA 189
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 6/83 (7%)
Query: 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRG 90
R + A ++ D PL VV F + F+ + E CDG+D+N+GCPQMVAKRG
Sbjct: 117 RRNALALVKADRPL----VVQF--CANKVDTFLAACRLVEDVCDGVDLNLGCPQMVAKRG 170
Query: 91 HYGAYLQDDWPLLTELGFKTRSH 113
YG++LQD+ L+ E+ R +
Sbjct: 171 RYGSWLQDEVDLICEMVSAVRDY 193
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 32/39 (82%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CDG+D+N+GCPQMVAKRG YG++LQD+ L+ E+V
Sbjct: 149 VEDVCDGVDLNLGCPQMVAKRGRYGSWLQDEVDLICEMV 187
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 7/72 (9%)
Query: 156 RGHYGAYLQDDWPLLTNLVYSPNMVHFVIA-----EPHCDGNDINIGCPQMVAKRGHYGA 210
R + A ++ D PL+ + N V +A E CDG D+N+GCPQMVAKRG YG+
Sbjct: 117 RRNALALVKADRPLVVQ--FCANKVDTFLAACRLVEDVCDGVDLNLGCPQMVAKRGRYGS 174
Query: 211 YLQDDWPLLTEL 222
+LQD+ L+ E+
Sbjct: 175 WLQDEVDLICEM 186
>gi|17507177|ref|NP_492379.1| Protein F36A2.2 [Caenorhabditis elegans]
gi|3876775|emb|CAB03067.1| Protein F36A2.2 [Caenorhabditis elegans]
Length = 527
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 39/58 (67%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC N A +L E CDG+D+N+GCPQMVAKRG YG++LQD+ L+ +V +
Sbjct: 132 VQFCANKVDTFLAACRLVEDVCDGVDLNLGCPQMVAKRGRYGSWLQDEVDLICEMVSA 189
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 35 GAYLQDDWPLLTE---LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGH 91
G Y ++ L+ LVV F + F+ + E CDG+D+N+GCPQMVAKRG
Sbjct: 114 GTYRRNSLALVKADRPLVVQF--CANKVDTFLAACRLVEDVCDGVDLNLGCPQMVAKRGR 171
Query: 92 YGAYLQDDWPLLTELGFKTRSH 113
YG++LQD+ L+ E+ R +
Sbjct: 172 YGSWLQDEVDLICEMVSAVRDY 193
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 32/39 (82%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CDG+D+N+GCPQMVAKRG YG++LQD+ L+ E+V
Sbjct: 149 VEDVCDGVDLNLGCPQMVAKRGRYGSWLQDEVDLICEMV 187
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 7/72 (9%)
Query: 156 RGHYGAYLQDDWPLLTNLVYSPNMVHFVIA-----EPHCDGNDINIGCPQMVAKRGHYGA 210
R + A ++ D PL+ + N V +A E CDG D+N+GCPQMVAKRG YG+
Sbjct: 117 RRNSLALVKADRPLVVQ--FCANKVDTFLAACRLVEDVCDGVDLNLGCPQMVAKRGRYGS 174
Query: 211 YLQDDWPLLTEL 222
+LQD+ L+ E+
Sbjct: 175 WLQDEVDLICEM 186
>gi|402471223|gb|EJW05080.1| hypothetical protein EDEG_00861 [Edhazardia aedis USNM 41457]
Length = 555
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 3/81 (3%)
Query: 96 LQDDWPLLTELGFKTRSHMCGHSLMF--CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMV 153
L+ +L + F T S++ H L+ CGN+ + EAAK+ +P+ IDIN GCPQ V
Sbjct: 155 LEKKLDVLEDEVFFT-SNLIDHPLVIQICGNNPDIMLEAAKIMQPYASAIDINFGCPQGV 213
Query: 154 AKRGHYGAYLQDDWPLLTNLV 174
AKRG YG+YLQDD L ++
Sbjct: 214 AKRGFYGSYLQDDLKLTQKII 234
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLF 62
+P+ IDIN GCPQ VAKRG YG+YLQDD L +++ S ++ N PLF
Sbjct: 197 QPYASAIDINFGCPQGVAKRGFYGSYLQDDLKLTQKIIETLS-LNLNVPLF 246
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 38 LQDDWPLLTELVVH--FSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGA 94
L+D+ + L+ H + N P + + I +P+ IDIN GCPQ VAKRG YG+
Sbjct: 162 LEDEVFFTSNLIDHPLVIQICGNNPDIMLEAAKIMQPYASAIDINFGCPQGVAKRGFYGS 221
Query: 95 YLQDDWPLLTEL 106
YLQDD L ++
Sbjct: 222 YLQDDLKLTQKI 233
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 12/72 (16%)
Query: 163 LQDDWPLLTNLVYSPNMVHFV------------IAEPHCDGNDINIGCPQMVAKRGHYGA 210
L+D+ +NL+ P ++ I +P+ DIN GCPQ VAKRG YG+
Sbjct: 162 LEDEVFFTSNLIDHPLVIQICGNNPDIMLEAAKIMQPYASAIDINFGCPQGVAKRGFYGS 221
Query: 211 YLQDDWPLLTEL 222
YLQDD L ++
Sbjct: 222 YLQDDLKLTQKI 233
>gi|429961459|gb|ELA41004.1| hypothetical protein VICG_01963 [Vittaforma corneae ATCC 50505]
Length = 341
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 40/58 (68%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ CG+D + + + + CD IDIN GCPQ VAKRGHYG+YLQD+W L++ +V +
Sbjct: 77 VQICGDDPEAMLQTCLSVQDCCDAIDINFGCPQDVAKRGHYGSYLQDEWDLISRIVST 134
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 32/41 (78%)
Query: 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ + CD IDIN GCPQ VAKRGHYG+YLQD+W L++ +V
Sbjct: 92 LSVQDCCDAIDINFGCPQDVAKRGHYGSYLQDEWDLISRIV 132
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 29/34 (85%)
Query: 73 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
CD IDIN GCPQ VAKRGHYG+YLQD+W L++ +
Sbjct: 98 CDAIDINFGCPQDVAKRGHYGSYLQDEWDLISRI 131
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 189 CDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAML 228
CD DIN GCPQ VAKRGHYG+YLQD+W L++ + L
Sbjct: 98 CDAIDINFGCPQDVAKRGHYGSYLQDEWDLISRIVSTCTL 137
>gi|388580092|gb|EIM20409.1| Dus-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 464
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 41/56 (73%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F ND K L E+AK + CD +D+N+GCPQ +A+RG YG++LQD+W L+ +L+
Sbjct: 90 VQFAANDPKLLLESAKDLQGKCDAVDLNLGCPQHIARRGRYGSWLQDEWDLIHSLI 145
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F+ + + L + + CD +D+N+GCPQ +A+RG YG++LQD+W L+ L
Sbjct: 88 LIVQFA--ANDPKLLLESAKDLQGKCDAVDLNLGCPQHIARRGRYGSWLQDEWDLIHSL 144
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 29/36 (80%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
CD +D+N+GCPQ +A+RG YG++LQD+W L+ L+
Sbjct: 110 KCDAVDLNLGCPQHIARRGRYGSWLQDEWDLIHSLI 145
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 188 HCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
CD D+N+GCPQ +A+RG YG++LQD+W L+ L
Sbjct: 110 KCDAVDLNLGCPQHIARRGRYGSWLQDEWDLIHSL 144
>gi|349804601|gb|AEQ17773.1| putative trna-dihydrouridine synthase 1 [Hymenochirus curtipes]
Length = 126
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 38/46 (82%), Gaps = 1/46 (2%)
Query: 129 LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
L +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+ QD+W LL ++
Sbjct: 1 LVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAF-QDEWNLLEKMI 45
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 34/40 (85%), Gaps = 1/40 (2%)
Query: 67 FIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+A+ +CD ID+N+GCPQM+AKRGHYGA+ QD+W LL ++
Sbjct: 6 LLAQDYCDAIDLNLGCPQMIAKRGHYGAF-QDEWNLLEKM 44
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMA 226
++A+ +CD D+N+GCPQM+AKRGHYGA+ QD+W LL ++ ++A
Sbjct: 6 LLAQDYCDAIDLNLGCPQMIAKRGHYGAF-QDEWNLLEKMIQLA 48
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 33/39 (84%), Gaps = 1/39 (2%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ +CD ID+N+GCPQM+AKRGHYGA+ QD+W LL +++
Sbjct: 8 AQDYCDAIDLNLGCPQMIAKRGHYGAF-QDEWNLLEKMI 45
>gi|440634324|gb|ELR04243.1| hypothetical protein GMDG_06651 [Geomyces destructans 20631-21]
Length = 588
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC N ++L AA+ P CD +D+N+GCPQ +A++G YGA+LQ+D L+ L+ N
Sbjct: 131 VQFCANTPEDLLAAAQYVAPFCDAVDLNLGCPQGIARKGGYGAFLQEDQELIYALI---N 187
Query: 179 MVHFVIAEP 187
+H +A P
Sbjct: 188 TLHTRLAVP 196
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 29/37 (78%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P CD +D+N+GCPQ +A++G YGA+LQ+D L+ L+
Sbjct: 150 PFCDAVDLNLGCPQGIARKGGYGAFLQEDQELIYALI 186
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 61 LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L ++A P CD +D+N+GCPQ +A++G YGA+LQ+D L+ L
Sbjct: 141 LLAAAQYVA-PFCDAVDLNLGCPQGIARKGGYGAFLQEDQELIYAL 185
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P CD D+N+GCPQ +A++G YGA+LQ+D L+ L
Sbjct: 150 PFCDAVDLNLGCPQGIARKGGYGAFLQEDQELIYAL 185
>gi|388852453|emb|CCF53855.1| related to tRNA dihydrouridine synthase [Ustilago hordei]
Length = 366
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 7/78 (8%)
Query: 104 TELGFKTRSH-MCGHS----LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGH 158
TE + +H M G S + GND + L EAA+ P D ID+N+GCPQ A++GH
Sbjct: 70 TENTIRGSTHPMTGQSAPQIVQLAGNDVQQLVEAARKVAPFADAIDLNLGCPQRHAEQGH 129
Query: 159 YGAYL--QDDWPLLTNLV 174
YGAYL + +WPL+ +V
Sbjct: 130 YGAYLLPKQNWPLIAKMV 147
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 30/39 (76%), Gaps = 2/39 (5%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELV 49
P D ID+N+GCPQ A++GHYGAYL + +WPL+ ++V
Sbjct: 109 PFADAIDLNLGCPQRHAEQGHYGAYLLPKQNWPLIAKMV 147
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 106
P D ID+N+GCPQ A++GHYGAYL + +WPL+ ++
Sbjct: 109 PFADAIDLNLGCPQRHAEQGHYGAYLLPKQNWPLIAKM 146
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 222
P D D+N+GCPQ A++GHYGAYL + +WPL+ ++
Sbjct: 109 PFADAIDLNLGCPQRHAEQGHYGAYLLPKQNWPLIAKM 146
>gi|403218399|emb|CCK72889.1| hypothetical protein KNAG_0M00360 [Kazachstania naganishii CBS
8797]
Length = 414
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 95 YLQDDW-PLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMV 153
Y +D W PL +G R + + CGND + + + A+L + CD +D+N+GCPQ +
Sbjct: 73 YRRDMWCPLDGTVGVADRPLI----VQICGNDPEYILKTAELVQDRCDAVDLNLGCPQGI 128
Query: 154 AKRGHYGAYLQDDWPLLTNLVYS 176
A++GHYG++L ++W ++ ++ +
Sbjct: 129 ARKGHYGSFLMEEWEVIEKIIRT 151
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 31/39 (79%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ CD +D+N+GCPQ +A++GHYG++L ++W ++ +++
Sbjct: 111 VQDRCDAVDLNLGCPQGIARKGHYGSFLMEEWEVIEKII 149
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 31/39 (79%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ + CD +D+N+GCPQ +A++GHYG++L ++W ++ ++
Sbjct: 110 LVQDRCDAVDLNLGCPQGIARKGHYGSFLMEEWEVIEKI 148
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 30/39 (76%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ + CD D+N+GCPQ +A++GHYG++L ++W ++ ++
Sbjct: 110 LVQDRCDAVDLNLGCPQGIARKGHYGSFLMEEWEVIEKI 148
>gi|310791648|gb|EFQ27175.1| dihydrouridine synthase [Glomerella graminicola M1.001]
Length = 555
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L AA P+CD +D+N+GCPQ +AK+G YGA+LQ+D L+ L+ N
Sbjct: 121 VQFCANDPDALLGAALRVAPYCDAVDLNLGCPQGIAKKGKYGAFLQEDQELIFKLI---N 177
Query: 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGILDNTGSW 238
+H + P I P A + L +LT G++ G L W
Sbjct: 178 TLHRNLPIPVTAKIRI---LPTREATLAYAKNVLSAGASILTVHGRLREQKGHLTGLADW 234
Query: 239 T 239
+
Sbjct: 235 S 235
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 32/41 (78%)
Query: 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ P+CD +D+N+GCPQ +AK+G YGA+LQ+D L+ +L+
Sbjct: 136 LRVAPYCDAVDLNLGCPQGIAKKGKYGAFLQEDQELIFKLI 176
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 62 FMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+G P+CD +D+N+GCPQ +AK+G YGA+LQ+D L+ +L
Sbjct: 131 LLGAALRVAPYCDAVDLNLGCPQGIAKKGKYGAFLQEDQELIFKL 175
>gi|303318106|ref|XP_003069055.1| Dihydrouridine synthase family protein [Coccidioides posadasii C735
delta SOWgp]
gi|240108736|gb|EER26910.1| Dihydrouridine synthase family protein [Coccidioides posadasii C735
delta SOWgp]
Length = 538
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L EAA+ + +CD +D+N+GCPQ +AK+G YGA+LQ++ L+ L+ N
Sbjct: 119 VQFCANDPDELLEAARHVQQYCDAVDLNLGCPQGIAKKGRYGAFLQEEPDLIYRLI---N 175
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 176 KLHTGLSIP 184
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 29/36 (80%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+CD +D+N+GCPQ +AK+G YGA+LQ++ L+ L+
Sbjct: 139 YCDAVDLNLGCPQGIAKKGRYGAFLQEEPDLIYRLI 174
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 28/35 (80%)
Query: 72 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+CD +D+N+GCPQ +AK+G YGA+LQ++ L+ L
Sbjct: 139 YCDAVDLNLGCPQGIAKKGRYGAFLQEEPDLIYRL 173
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 188 HCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+CD D+N+GCPQ +AK+G YGA+LQ++ L+ L
Sbjct: 139 YCDAVDLNLGCPQGIAKKGRYGAFLQEEPDLIYRL 173
>gi|119185991|ref|XP_001243602.1| hypothetical protein CIMG_03043 [Coccidioides immitis RS]
gi|392870306|gb|EJB11997.1| dihydrouridine synthase [Coccidioides immitis RS]
Length = 538
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L EAA+ + +CD +D+N+GCPQ +AK+G YGA+LQ++ L+ L+ N
Sbjct: 119 VQFCANDPDELLEAARHVQQYCDAVDLNLGCPQGIAKKGRYGAFLQEEPDLIYRLI---N 175
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 176 KLHTGLSIP 184
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 29/36 (80%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+CD +D+N+GCPQ +AK+G YGA+LQ++ L+ L+
Sbjct: 139 YCDAVDLNLGCPQGIAKKGRYGAFLQEEPDLIYRLI 174
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 28/35 (80%)
Query: 72 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+CD +D+N+GCPQ +AK+G YGA+LQ++ L+ L
Sbjct: 139 YCDAVDLNLGCPQGIAKKGRYGAFLQEEPDLIYRL 173
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 188 HCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+CD D+N+GCPQ +AK+G YGA+LQ++ L+ L
Sbjct: 139 YCDAVDLNLGCPQGIAKKGRYGAFLQEEPDLIYRL 173
>gi|348667101|gb|EGZ06927.1| hypothetical protein PHYSODRAFT_289018 [Phytophthora sojae]
Length = 369
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 41/58 (70%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCGND K + AAK+ E HCD +D+N+GCPQ +A++G+YG++L D + +V +
Sbjct: 75 VQFCGNDPKTVLAAAKMVEGHCDAVDLNLGCPQGIARKGNYGSFLMHDKDTVQAIVET 132
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
E HCD +D+N+GCPQ +A++G+YG++L D + +V S
Sbjct: 92 VEGHCDAVDLNLGCPQGIARKGNYGSFLMHDKDTVQAIVETLS 134
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 12/130 (9%)
Query: 48 LVVHFSWVSKNGP-LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
LVV F N P + + E HCD +D+N+GCPQ +A++G+YG++L D + +
Sbjct: 73 LVVQFCG---NDPKTVLAAAKMVEGHCDAVDLNLGCPQGIARKGNYGSFLMHDKDTVQAI 129
Query: 107 GFKTRSHM---CGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 163
+++ + +D++ L A L + CD + ++ +M + A
Sbjct: 130 VETLSANLNVPVTVKIRVFPDDNETLEFADMLQKAGCDLLTVHGRTKEM-----NKTAVR 184
Query: 164 QDDWPLLTNL 173
+ DW ++ +
Sbjct: 185 EVDWDIIRRI 194
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD 215
+ E HCD D+N+GCPQ +A++G+YG++L D
Sbjct: 91 MVEGHCDAVDLNLGCPQGIARKGNYGSFLMHD 122
>gi|320036772|gb|EFW18710.1| dihydrouridine synthase [Coccidioides posadasii str. Silveira]
Length = 538
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L EAA+ + +CD +D+N+GCPQ +AK+G YGA+LQ++ L+ L+ N
Sbjct: 119 VQFCANDPDELLEAARHVQQYCDAVDLNLGCPQGIAKKGRYGAFLQEEPDLIYRLI---N 175
Query: 179 MVHFVIAEP 187
+H ++ P
Sbjct: 176 KLHTGLSIP 184
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 29/36 (80%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+CD +D+N+GCPQ +AK+G YGA+LQ++ L+ L+
Sbjct: 139 YCDAVDLNLGCPQGIAKKGRYGAFLQEEPDLIYRLI 174
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 28/35 (80%)
Query: 72 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+CD +D+N+GCPQ +AK+G YGA+LQ++ L+ L
Sbjct: 139 YCDAVDLNLGCPQGIAKKGRYGAFLQEEPDLIYRL 173
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 188 HCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+CD D+N+GCPQ +AK+G YGA+LQ++ L+ L
Sbjct: 139 YCDAVDLNLGCPQGIAKKGRYGAFLQEEPDLIYRL 173
>gi|406867259|gb|EKD20297.1| tRNA-dihydrouridine synthase C [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 696
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC N+ L +AA P CD +D+N+GCPQ +A++G YGA+LQ+D L+ +L+ N
Sbjct: 186 VQFCANNPDELLKAATYVAPFCDAVDLNLGCPQGIARKGRYGAFLQEDQELIYSLI---N 242
Query: 179 MVHF 182
+H
Sbjct: 243 KLHL 246
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 29/37 (78%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P CD +D+N+GCPQ +A++G YGA+LQ+D L+ L+
Sbjct: 205 PFCDAVDLNLGCPQGIARKGRYGAFLQEDQELIYSLI 241
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 52 FSWVSKNGP--LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
F N P L ++A P CD +D+N+GCPQ +A++G YGA+LQ+D L+ L
Sbjct: 185 FVQFCANNPDELLKAATYVA-PFCDAVDLNLGCPQGIARKGRYGAFLQEDQELIYSL 240
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P CD D+N+GCPQ +A++G YGA+LQ+D L+ L
Sbjct: 205 PFCDAVDLNLGCPQGIARKGRYGAFLQEDQELIYSL 240
>gi|380479522|emb|CCF42966.1| dihydrouridine synthase [Colletotrichum higginsianum]
Length = 547
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND L AA P+CD +D+N+GCPQ +AK+G YGA+LQ+D L+ L+ N
Sbjct: 125 VQFCANDPDALLGAALRVAPYCDAVDLNLGCPQGIAKKGKYGAFLQEDQELIFKLI---N 181
Query: 179 MVH 181
+H
Sbjct: 182 TLH 184
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 32/41 (78%)
Query: 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ P+CD +D+N+GCPQ +AK+G YGA+LQ+D L+ +L+
Sbjct: 140 LRVAPYCDAVDLNLGCPQGIAKKGKYGAFLQEDQELIFKLI 180
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 62 FMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+G P+CD +D+N+GCPQ +AK+G YGA+LQ+D L+ +L
Sbjct: 135 LLGAALRVAPYCDAVDLNLGCPQGIAKKGKYGAFLQEDQELIFKL 179
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 29/36 (80%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +AK+G YGA+LQ+D L+ +L
Sbjct: 144 PYCDAVDLNLGCPQGIAKKGKYGAFLQEDQELIFKL 179
>gi|224003889|ref|XP_002291616.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973392|gb|EED91723.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 333
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 35/46 (76%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 166
FCG+D L +A K+ EPH DG+DIN GCPQ +AKRG YGA+L ++
Sbjct: 60 FCGHDKNVLLQAMKVLEPHVDGVDINCGCPQNIAKRGRYGAFLMEE 105
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELVVHFS 53
EPH DG+DIN GCPQ +AKRG YGA+L +D+ + E+V H +
Sbjct: 76 EPHVDGVDINCGCPQNIAKRGRYGAFLMEEDNGDKIVEIVQHLT 119
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
L+ F KN + + + + EPH DG+DIN GCPQ +AKRG YGA+L ++
Sbjct: 56 LIAQFCGHDKN--VLLQAMKVLEPHVDGVDINCGCPQNIAKRGRYGAFLMEE 105
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD 215
+ EPH DG DIN GCPQ +AKRG YGA+L ++
Sbjct: 74 VLEPHVDGVDINCGCPQNIAKRGRYGAFLMEE 105
>gi|403413532|emb|CCM00232.1| predicted protein [Fibroporia radiculosa]
Length = 324
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYS 176
+ CGND + + A + + +CDGID+N+GCPQ A+ HYGAYL Q DWP++ ++V +
Sbjct: 45 VQLCGNDPEIVVRAGRCVQNYCDGIDLNLGCPQEAARDAHYGAYLLGQKDWPVVESMVSA 104
Query: 177 PNMVHFVIA 185
M H I
Sbjct: 105 --MSHSFIV 111
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELVVHFS 53
+ +CDGID+N+GCPQ A+ HYGAYL Q DWP++ +V S
Sbjct: 62 VQNYCDGIDLNLGCPQEAARDAHYGAYLLGQKDWPVVESMVSAMS 106
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 28/37 (75%), Gaps = 2/37 (5%)
Query: 72 HCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 106
+CDGID+N+GCPQ A+ HYGAYL Q DWP++ +
Sbjct: 65 YCDGIDLNLGCPQEAARDAHYGAYLLGQKDWPVVESM 101
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
Query: 188 HCDGNDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 222
+CDG D+N+GCPQ A+ HYGAYL Q DWP++ +
Sbjct: 65 YCDGIDLNLGCPQEAARDAHYGAYLLGQKDWPVVESM 101
>gi|325188155|emb|CCA22696.1| tRNAdihydrouridine synthase putative [Albugo laibachii Nc14]
Length = 367
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FCGND + AAK E HCD +DIN+GCPQ +A++G+YGA+L + + +V
Sbjct: 78 VQFCGNDGDTMVAAAKYVEGHCDAVDINLGCPQGIARKGNYGAFLMKEKTRVCEIV 133
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E HCD +DIN+GCPQ +A++G+YGA+L + + E+V
Sbjct: 95 VEGHCDAVDINLGCPQGIARKGNYGAFLMKEKTRVCEIV 133
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 41 DWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 100
D PL+ + + +G + E HCD +DIN+GCPQ +A++G+YGA+L +
Sbjct: 73 DRPLIVQ------FCGNDGDTMVAAAKYVEGHCDAVDINLGCPQGIARKGNYGAFLMKEK 126
Query: 101 PLLTEL 106
+ E+
Sbjct: 127 TRVCEI 132
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 185 AEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
E HCD DIN+GCPQ +A++G+YGA+L + + E+
Sbjct: 95 VEGHCDAVDINLGCPQGIARKGNYGAFLMKEKTRVCEI 132
>gi|330800078|ref|XP_003288066.1| hypothetical protein DICPUDRAFT_152274 [Dictyostelium purpureum]
gi|325081890|gb|EGC35390.1| hypothetical protein DICPUDRAFT_152274 [Dictyostelium purpureum]
Length = 402
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 37/47 (78%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 165
+ FCGND + + +AAKL E CD ID+N+GCPQ +A+RG+YG++L D
Sbjct: 109 VQFCGNDPEWVVKAAKLVEDRCDAIDLNLGCPQQIARRGNYGSFLLD 155
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 19/83 (22%)
Query: 36 AYLQDDWPLLTE---LVVHF-----SWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVA 87
Y +D++ E LVV F WV K L E CD ID+N+GCPQ +A
Sbjct: 92 TYRKDNFTTCPEDRPLVVQFCGNDPEWVVKAAKL-------VEDRCDAIDLNLGCPQQIA 144
Query: 88 KRGHYGAYLQDD----WPLLTEL 106
+RG+YG++L D P++ EL
Sbjct: 145 RRGNYGSFLLDKPHIILPIVREL 167
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 4/42 (9%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDD----WPLLTEL 48
E CD ID+N+GCPQ +A+RG+YG++L D P++ EL
Sbjct: 126 VEDRCDAIDLNLGCPQQIARRGNYGSFLLDKPHIILPIVREL 167
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 4/45 (8%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD----WPLLTELGK 224
+ E CD D+N+GCPQ +A+RG+YG++L D P++ EL K
Sbjct: 125 LVEDRCDAIDLNLGCPQQIARRGNYGSFLLDKPHIILPIVRELHK 169
>gi|168050219|ref|XP_001777557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671042|gb|EDQ57600.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 324
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 38/56 (67%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F ND + L +AA + CD +DIN+GCPQ VAKRG YGA+L DD PL+ +V
Sbjct: 73 VQFGANDPELLVKAAMFVQEDCDYVDINLGCPQRVAKRGFYGAFLMDDLPLIQLMV 128
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 13/66 (19%)
Query: 50 VHFSWVSKNGPLFM------------GPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 97
V F+ ++ PLF+ +F+ E CD +DIN+GCPQ VAKRG YGA+L
Sbjct: 60 VEFTTCPEDRPLFVQFGANDPELLVKAAMFVQE-DCDYVDINLGCPQRVAKRGFYGAFLM 118
Query: 98 DDWPLL 103
DD PL+
Sbjct: 119 DDLPLI 124
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/38 (60%), Positives = 28/38 (73%)
Query: 15 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHF 52
CD +DIN+GCPQ VAKRG YGA+L DD PL+ +V
Sbjct: 94 CDYVDINLGCPQRVAKRGFYGAFLMDDLPLIQLMVTQL 131
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 27/37 (72%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLL 219
+ + CD DIN+GCPQ VAKRG YGA+L DD PL+
Sbjct: 88 MFVQEDCDYVDINLGCPQRVAKRGFYGAFLMDDLPLI 124
>gi|320587574|gb|EFX00049.1| dihydrouridine synthase family [Grosmannia clavigera kw1407]
Length = 556
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 41/58 (70%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC ND L AA+L PHCD +D+N+GCPQ +A++G YGA+LQ+D L+ L+ +
Sbjct: 117 VQFCANDPTALLAAARLVAPHCDAVDLNLGCPQGIARKGRYGAFLQEDRELIVRLIRA 174
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 30/37 (81%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
PHCD +D+N+GCPQ +A++G YGA+LQ+D L+ L+
Sbjct: 136 PHCDAVDLNLGCPQGIARKGRYGAFLQEDRELIVRLI 172
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 29/36 (80%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
PHCD +D+N+GCPQ +A++G YGA+LQ+D L+ L
Sbjct: 136 PHCDAVDLNLGCPQGIARKGRYGAFLQEDRELIVRL 171
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
PHCD D+N+GCPQ +A++G YGA+LQ+D L+ L
Sbjct: 136 PHCDAVDLNLGCPQGIARKGRYGAFLQEDRELIVRL 171
>gi|323507663|emb|CBQ67534.1| related to tRNA dihydrouridine synthase [Sporisorium reilianum
SRZ2]
Length = 362
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLV 174
+ GND + L EA++ P D ID+N+GCPQ A++GHYGAYL + +WPLL +V
Sbjct: 90 VQLAGNDVQQLVEASRKVAPFADAIDLNLGCPQRHAEQGHYGAYLLPKQNWPLLAEIV 147
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELV 49
+ P D ID+N+GCPQ A++GHYGAYL + +WPLL E+V
Sbjct: 106 KVAPFADAIDLNLGCPQRHAEQGHYGAYLLPKQNWPLLAEIV 147
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 106
P D ID+N+GCPQ A++GHYGAYL + +WPLL E+
Sbjct: 109 PFADAIDLNLGCPQRHAEQGHYGAYLLPKQNWPLLAEI 146
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 222
P D D+N+GCPQ A++GHYGAYL + +WPLL E+
Sbjct: 109 PFADAIDLNLGCPQRHAEQGHYGAYLLPKQNWPLLAEI 146
>gi|390598920|gb|EIN08317.1| FMN-linked oxidoreductase [Punctularia strigosozonata HHB-11173
SS5]
Length = 290
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYS 176
+ CGN+ L A+ CDGID+N GCPQ A+ GHYG YL Q DWPL+ NL+ S
Sbjct: 69 VQLCGNNPDTLIRGARKLVHRCDGIDLNFGCPQEHAQEGHYGGYLLGQRDWPLVQNLISS 128
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELVVHFS 53
CDGID+N GCPQ A+ GHYG YL Q DWPL+ L+ S
Sbjct: 89 RCDGIDLNFGCPQEHAQEGHYGGYLLGQRDWPLVQNLISSMS 130
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 72 HCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 106
CDGID+N GCPQ A+ GHYG YL Q DWPL+ L
Sbjct: 89 RCDGIDLNFGCPQEHAQEGHYGGYLLGQRDWPLVQNL 125
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 188 HCDGNDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 222
CDG D+N GCPQ A+ GHYG YL Q DWPL+ L
Sbjct: 89 RCDGIDLNFGCPQEHAQEGHYGGYLLGQRDWPLVQNL 125
>gi|159465759|ref|XP_001691090.1| predicted protein [Chlamydomonas reinhardtii]
gi|158279776|gb|EDP05536.1| predicted protein [Chlamydomonas reinhardtii]
Length = 336
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 119 LMFCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC N+ ++L +AA++ E CD IDIN GCPQ +AKRG YGA+L DD P + +V
Sbjct: 106 VQFCSNEPQHLLKAARMVEAMGICDAIDINFGCPQRIAKRGGYGAFLMDDLPKVEAMV 163
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 28/41 (68%)
Query: 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+E CD IDIN GCPQ +AKRG YGA+L DD P + +V
Sbjct: 123 VEAMGICDAIDINFGCPQRIAKRGGYGAFLMDDLPKVEAMV 163
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 23/29 (79%)
Query: 73 CDGIDINIGCPQMVAKRGHYGAYLQDDWP 101
CD IDIN GCPQ +AKRG YGA+L DD P
Sbjct: 129 CDAIDINFGCPQRIAKRGGYGAFLMDDLP 157
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 189 CDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224
CD DIN GCPQ +AKRG YGA+L DD P + + +
Sbjct: 129 CDAIDINFGCPQRIAKRGGYGAFLMDDLPKVEAMVR 164
>gi|429861207|gb|ELA35907.1| dihydrouridine synthase family [Colletotrichum gloeosporioides Nara
gc5]
Length = 455
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 42/65 (64%)
Query: 110 TRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL 169
T + GH FC ND L AA A P+CD +D+N+GCPQ +A++G YGA+LQ+D L
Sbjct: 30 TEHYRDGHFQAFCANDPDALLGAALKAAPYCDAVDLNLGCPQGIARKGKYGAFLQEDQEL 89
Query: 170 LTNLV 174
+ L+
Sbjct: 90 IFKLI 94
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 31/37 (83%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CD +D+N+GCPQ +A++G YGA+LQ+D L+ +L+
Sbjct: 58 PYCDAVDLNLGCPQGIARKGKYGAFLQEDQELIFKLI 94
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 30/36 (83%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P+CD +D+N+GCPQ +A++G YGA+LQ+D L+ +L
Sbjct: 58 PYCDAVDLNLGCPQGIARKGKYGAFLQEDQELIFKL 93
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 29/36 (80%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
P+CD D+N+GCPQ +A++G YGA+LQ+D L+ +L
Sbjct: 58 PYCDAVDLNLGCPQGIARKGKYGAFLQEDQELIFKL 93
>gi|426195334|gb|EKV45264.1| hypothetical protein AGABI2DRAFT_208170 [Agaricus bisporus var.
bisporus H97]
Length = 316
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYS 176
CGND + +A + + +C GID+N+GCPQ +A+ GHYGAYL Q DW L+ ++V S
Sbjct: 36 LCGNDPDAIVQAGRKLQNYCQGIDLNLGCPQGLARDGHYGAYLLGQSDWSLVESIVSS 93
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 56/128 (43%), Gaps = 24/128 (18%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELVVHFSWVSKNGPLFMGPLFIA 69
+ +C GID+N+GCPQ +A+ GHYGAYL Q DW L+ S VS F P+ +
Sbjct: 52 QNYCQGIDLNLGCPQGLARDGHYGAYLLGQSDWSLVE------SIVSSMAQSFTVPVSVK 105
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNL 129
C + ++ + H GA W +L R G S +L
Sbjct: 106 TRLCQP---QVKTLELYQRLEHCGA----SWLILHGRTISARRRRQG---------SADL 149
Query: 130 TEAAKLAE 137
TE +L E
Sbjct: 150 TEVKRLKE 157
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 222
+ +C G D+N+GCPQ +A+ GHYGAYL Q DW L+ +
Sbjct: 52 QNYCQGIDLNLGCPQGLARDGHYGAYLLGQSDWSLVESI 90
>gi|170099590|ref|XP_001881013.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164643692|gb|EDR07943.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 234
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYS 176
+ CG+D + + +A + + HCD ID+N+GCPQ A+ GH+GAYL Q +WPL+ +V +
Sbjct: 71 IQLCGHDPQTIVKAGRKLQGHCDAIDLNLGCPQESARDGHFGAYLLGQKNWPLVEEIVSA 130
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELVVHFS 53
HCD ID+N+GCPQ A+ GH+GAYL Q +WPL+ E+V S
Sbjct: 91 HCDAIDLNLGCPQESARDGHFGAYLLGQKNWPLVEEIVSAMS 132
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 29/37 (78%), Gaps = 2/37 (5%)
Query: 72 HCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 106
HCD ID+N+GCPQ A+ GH+GAYL Q +WPL+ E+
Sbjct: 91 HCDAIDLNLGCPQESARDGHFGAYLLGQKNWPLVEEI 127
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 28/37 (75%), Gaps = 2/37 (5%)
Query: 188 HCDGNDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 222
HCD D+N+GCPQ A+ GH+GAYL Q +WPL+ E+
Sbjct: 91 HCDAIDLNLGCPQESARDGHFGAYLLGQKNWPLVEEI 127
>gi|340500057|gb|EGR26961.1| t-diRNAhydrouridine synthase, putative [Ichthyophthirius
multifiliis]
Length = 346
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
FCGND + L EA K + CD +DIN GCPQ +AK+GHYG++L + L+ ++V
Sbjct: 83 FCGNDPEVLLEACKYIQKDCDAVDINFGCPQGIAKKGHYGSFLLQEPDLIESMV 136
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 27/38 (71%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ CD +DIN GCPQ +AK+GHYG++L + L+ +V
Sbjct: 99 QKDCDAVDINFGCPQGIAKKGHYGSFLLQEPDLIESMV 136
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHM 114
+ CD +DIN GCPQ +AK+GHYG++L + L+ + K +
Sbjct: 99 QKDCDAVDINFGCPQGIAKKGHYGSFLLQEPDLIESMVKKLHEEL 143
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224
+ CD DIN GCPQ +AK+GHYG++L + L+ + K
Sbjct: 99 QKDCDAVDINFGCPQGIAKKGHYGSFLLQEPDLIESMVK 137
>gi|66815915|ref|XP_641974.1| tRNA-dihydrouridine synthase 1-like protein [Dictyostelium
discoideum AX4]
gi|60470022|gb|EAL68003.1| tRNA-dihydrouridine synthase 1-like protein [Dictyostelium
discoideum AX4]
Length = 435
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 37/47 (78%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 165
+ FCGN+ + + +AAK E HCD ID+N+GCPQ +A+RG+YG++L D
Sbjct: 111 VQFCGNEPEWVVKAAKYIEDHCDAIDLNLGCPQQIARRGNYGSFLLD 157
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 19/83 (22%)
Query: 36 AYLQDDWPLLTE---LVVHF-----SWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVA 87
Y +D W E LVV F WV K E HCD ID+N+GCPQ +A
Sbjct: 94 TYRRDYWSTCPEDRPLVVQFCGNEPEWVVKAAKYI-------EDHCDAIDLNLGCPQQIA 146
Query: 88 KRGHYGAYLQDD----WPLLTEL 106
+RG+YG++L D P++ EL
Sbjct: 147 RRGNYGSFLLDKPHIILPIVQEL 169
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDD----WPLLTELVVHFS 53
E HCD ID+N+GCPQ +A+RG+YG++L D P++ EL H
Sbjct: 129 EDHCDAIDLNLGCPQQIARRGNYGSFLLDKPHIILPIVQELHKHIK 174
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 4/43 (9%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDD----WPLLTELGK 224
E HCD D+N+GCPQ +A+RG+YG++L D P++ EL K
Sbjct: 129 EDHCDAIDLNLGCPQQIARRGNYGSFLLDKPHIILPIVQELHK 171
>gi|406601374|emb|CCH46984.1| tRNA-dihydrouridine synthase [Wickerhamomyces ciferrii]
Length = 412
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ND L +AAK CD +D+N+GCPQ +AK+G+YGA+L D W L+ L+
Sbjct: 79 VQFCANDPDYLLQAAKHVVGKCDAVDLNLGCPQGIAKKGNYGAFLMDHWDLVHKLI 134
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 29/36 (80%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
CD +D+N+GCPQ +AK+G+YGA+L D W L+ +L+
Sbjct: 99 KCDAVDLNLGCPQGIAKKGNYGAFLMDHWDLVHKLI 134
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 72 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHM 114
CD +D+N+GCPQ +AK+G+YGA+L D W L+ +L K + +
Sbjct: 99 KCDAVDLNLGCPQGIAKKGNYGAFLMDHWDLVHKLINKLHTEL 141
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 188 HCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
CD D+N+GCPQ +AK+G+YGA+L D W L+ +L
Sbjct: 99 KCDAVDLNLGCPQGIAKKGNYGAFLMDHWDLVHKL 133
>gi|443917404|gb|ELU38128.1| Dus domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 219
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 36/47 (76%)
Query: 127 KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 173
+ L ++A + + HCD +DIN GCPQ +AK+GHYG++LQDDW L+ L
Sbjct: 110 QKLLDSALVVQDHCDAVDINFGCPQDIAKKGHYGSFLQDDWDLVYKL 156
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225
++ + HCD DIN GCPQ +AK+GHYG++LQDDW L+ +L K+
Sbjct: 117 LVVQDHCDAVDINFGCPQDIAKKGHYGSFLQDDWDLVYKLSKL 159
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 32/40 (80%)
Query: 67 FIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ + HCD +DIN GCPQ +AK+GHYG++LQDDW L+ +L
Sbjct: 117 LVVQDHCDAVDINFGCPQDIAKKGHYGSFLQDDWDLVYKL 156
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 30/35 (85%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 48
HCD +DIN GCPQ +AK+GHYG++LQDDW L+ +L
Sbjct: 122 HCDAVDINFGCPQDIAKKGHYGSFLQDDWDLVYKL 156
>gi|328873275|gb|EGG21642.1| tRNA-dihydrouridine synthase 1-like protein [Dictyostelium
fasciculatum]
Length = 426
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 36/45 (80%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 163
+ FCGN+ ++ ++AK+ E HCD +DIN+GCPQ +A++G YGA+L
Sbjct: 112 VQFCGNEVDHIVKSAKMVEDHCDAVDINLGCPQGIARKGFYGAFL 156
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 24/29 (82%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYL 96
+ E HCD +DIN+GCPQ +A++G YGA+L
Sbjct: 128 MVEDHCDAVDINLGCPQGIARKGFYGAFL 156
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYL 38
E HCD +DIN+GCPQ +A++G YGA+L
Sbjct: 129 VEDHCDAVDINLGCPQGIARKGFYGAFL 156
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 5/40 (12%)
Query: 173 LVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYL 212
+V S MV E HCD DIN+GCPQ +A++G YGA+L
Sbjct: 122 IVKSAKMV-----EDHCDAVDINLGCPQGIARKGFYGAFL 156
>gi|156085996|ref|XP_001610407.1| dihydrouridine synthase [Babesia bovis T2Bo]
gi|154797660|gb|EDO06839.1| dihydrouridine synthase, putative [Babesia bovis]
Length = 355
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 15/77 (19%)
Query: 98 DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRG 157
DD PL+ ++ CG+D+ +T+AA+L + H +D+N+GCPQ +AK G
Sbjct: 65 DDRPLIAQV---------------CGDDAGTITQAARLLKGHVSAVDLNLGCPQAIAKDG 109
Query: 158 HYGAYLQDDWPLLTNLV 174
HYG++L D+ L+T +V
Sbjct: 110 HYGSFLLDEPDLVTGIV 126
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
H +D+N+GCPQ +AK GHYG++L D+ L+T +V +
Sbjct: 91 HVSAVDLNLGCPQAIAKDGHYGSFLLDEPDLVTGIVSRVT 130
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 72 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 104
H +D+N+GCPQ +AK GHYG++L D+ L+T
Sbjct: 91 HVSAVDLNLGCPQAIAKDGHYGSFLLDEPDLVT 123
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 188 HCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL-GKMAMLVGI 231
H D+N+GCPQ +AK GHYG++L D+ L+T + ++ VGI
Sbjct: 91 HVSAVDLNLGCPQAIAKDGHYGSFLLDEPDLVTGIVSRVTREVGI 135
>gi|281207360|gb|EFA81543.1| tRNA-dihydrouridine synthase 1-like protein [Polysphondylium
pallidum PN500]
Length = 430
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 35/45 (77%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 163
+ FCGN+ + +AAK+ E CD +D+N+GCPQ +A+RG+YGA+L
Sbjct: 133 VQFCGNEVDYIVQAAKMVESQCDAVDLNLGCPQGIARRGNYGAFL 177
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 24/29 (82%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYL 96
+ E CD +D+N+GCPQ +A+RG+YGA+L
Sbjct: 149 MVESQCDAVDLNLGCPQGIARRGNYGAFL 177
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 7/54 (12%)
Query: 164 QDDWPLLTNLVYSPNMVHFVI-----AEPHCDGNDINIGCPQMVAKRGHYGAYL 212
++D PL+ + N V +++ E CD D+N+GCPQ +A+RG+YGA+L
Sbjct: 126 KEDRPLVVQ--FCGNEVDYIVQAAKMVESQCDAVDLNLGCPQGIARRGNYGAFL 177
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 23/28 (82%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYL 38
E CD +D+N+GCPQ +A+RG+YGA+L
Sbjct: 150 VESQCDAVDLNLGCPQGIARRGNYGAFL 177
>gi|397645331|gb|EJK76781.1| hypothetical protein THAOC_01440 [Thalassiosira oceanica]
Length = 320
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYS 176
F ND ++ AAKL EP CD ID+N+GCPQ A GH+G+YL +D L+ N+V +
Sbjct: 148 FSANDPQDFVSAAKLVEPVCDAIDLNLGCPQRTAYLGHFGSYLLGNEDRQLVVNIVKA 205
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 48 LVVHFSWVSKNGPL-FMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLT 104
LV HFS N P F+ + EP CD ID+N+GCPQ A GH+G+YL +D L+
Sbjct: 144 LVCHFSA---NDPQDFVSAAKLVEPVCDAIDLNLGCPQRTAYLGHFGSYLLGNEDRQLVV 200
Query: 105 EL 106
+
Sbjct: 201 NI 202
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELV 49
EP CD ID+N+GCPQ A GH+G+YL +D L+ +V
Sbjct: 163 VEPVCDAIDLNLGCPQRTAYLGHFGSYLLGNEDRQLVVNIV 203
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYL--QDDWPLLTELGKMAM-LVGI 231
+ EP CD D+N+GCPQ A GH+G+YL +D L+ + K A VGI
Sbjct: 162 LVEPVCDAIDLNLGCPQRTAYLGHFGSYLLGNEDRQLVVNIVKAATGAVGI 212
>gi|221505283|gb|EEE30937.1| dihydrouridine synthase domain-containing protein, putative
[Toxoplasma gondii VEG]
Length = 544
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FCG+ L AA+L E + +D+N+GCPQ +A+RGHYGA+L ++ LL ++V +
Sbjct: 149 VQFCGDSPATLLAAAQLVEDEVEAVDVNVGCPQGIARRGHYGAFLLNEPELLVDIV---S 205
Query: 179 MVHFVIAEP-HCDGNDINIGCPQMVAKRGHYGAYLQDDWPL 218
+H + P C ++ P+ R L ++ L
Sbjct: 206 TLHKHLKTPVTCKMRKVSPRNPRDALPRSEAALVLDEERRL 246
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 29/39 (74%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E + +D+N+GCPQ +A+RGHYGA+L ++ LL ++V
Sbjct: 166 VEDEVEAVDVNVGCPQGIARRGHYGAFLLNEPELLVDIV 204
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 31/47 (65%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHM 114
+ E + +D+N+GCPQ +A+RGHYGA+L ++ LL ++ H+
Sbjct: 165 LVEDEVEAVDVNVGCPQGIARRGHYGAFLLNEPELLVDIVSTLHKHL 211
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E + D+N+GCPQ +A+RGHYGA+L ++ LL ++
Sbjct: 165 LVEDEVEAVDVNVGCPQGIARRGHYGAFLLNEPELLVDI 203
>gi|336375552|gb|EGO03888.1| hypothetical protein SERLA73DRAFT_119513 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388669|gb|EGO29813.1| hypothetical protein SERLADRAFT_365819 [Serpula lacrymans var.
lacrymans S7.9]
Length = 245
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYS 176
+ CGND + + +A + + +CD ID+N+GCPQ A+ GH+G YL Q DWPL+ +V +
Sbjct: 70 VQLCGNDPETIVKAGRKLQSYCDAIDLNLGCPQDHARDGHFGGYLLGQKDWPLVEGIVSA 129
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 2/46 (4%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELVVHFS 53
+ + +CD ID+N+GCPQ A+ GH+G YL Q DWPL+ +V S
Sbjct: 86 KLQSYCDAIDLNLGCPQDHARDGHFGGYLLGQKDWPLVEGIVSAMS 131
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLL 103
+ +CD ID+N+GCPQ A+ GH+G YL Q DWPL+
Sbjct: 88 QSYCDAIDLNLGCPQDHARDGHFGGYLLGQKDWPLV 123
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYL--QDDWPLL 219
+ +CD D+N+GCPQ A+ GH+G YL Q DWPL+
Sbjct: 88 QSYCDAIDLNLGCPQDHARDGHFGGYLLGQKDWPLV 123
>gi|209882371|ref|XP_002142622.1| dihydrouridine synthase family protein [Cryptosporidium muris RN66]
gi|209558228|gb|EEA08273.1| dihydrouridine synthase family protein [Cryptosporidium muris RN66]
Length = 405
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 40/56 (71%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
L FCGN+ + + +A+K + GID+N GCPQ +AKRGHYGA+L ++ L+ +LV
Sbjct: 73 LQFCGNNPEVILQASKYIDNKVQGIDLNFGCPQNIAKRGHYGAFLLEEPELMESLV 128
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 17 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
GID+N GCPQ +AKRGHYGA+L ++ L+ LV
Sbjct: 96 GIDLNFGCPQNIAKRGHYGAFLLEEPELMESLV 128
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
DD PL+ + + N + + + GID+N GCPQ +AKRGHYGA+L ++
Sbjct: 67 DDKPLILQ------FCGNNPEVILQASKYIDNKVQGIDLNFGCPQNIAKRGHYGAFLLEE 120
Query: 100 WPLLTELGFK 109
L+ L K
Sbjct: 121 PELMESLVSK 130
Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 191 GNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
G D+N GCPQ +AKRGHYGA+L ++ L+ L
Sbjct: 96 GIDLNFGCPQNIAKRGHYGAFLLEEPELMESL 127
>gi|428169432|gb|EKX38366.1| hypothetical protein GUITHDRAFT_158510 [Guillardia theta CCMP2712]
Length = 330
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 40/56 (71%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC N + AA+L + CD +D+N+GCPQ +AK+G+YG++L +D+ L+ +LV
Sbjct: 105 VQFCANHPETFLAAARLVQHRCDAVDLNLGCPQGIAKKGNYGSFLMEDFDLVFSLV 160
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
+D PL + + + + F+ + + CD +D+N+GCPQ +AK+G+YG++L +D
Sbjct: 99 EDRPLFVQ------FCANHPETFLAAARLVQHRCDAVDLNLGCPQGIAKKGNYGSFLMED 152
Query: 100 WPLLTEL 106
+ L+ L
Sbjct: 153 FDLVFSL 159
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 29/36 (80%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
CD +D+N+GCPQ +AK+G+YG++L +D+ L+ LV
Sbjct: 125 RCDAVDLNLGCPQGIAKKGNYGSFLMEDFDLVFSLV 160
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 29/39 (74%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ + CD D+N+GCPQ +AK+G+YG++L +D+ L+ L
Sbjct: 121 LVQHRCDAVDLNLGCPQGIAKKGNYGSFLMEDFDLVFSL 159
>gi|403363281|gb|EJY81383.1| tRNA-dihydrouridine synthase [Oxytricha trifallax]
Length = 438
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
S+ FC ND + L +AA+ E CD +DIN GCPQ +A++G YG++L + ++ +LV +
Sbjct: 105 SVQFCANDPQVLLKAARYVENDCDAVDINFGCPQGIARKGKYGSFLLEKTEIIRSLVTT 163
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
E CD +DIN GCPQ +A++G YG++L + ++ LV +
Sbjct: 124 ENDCDAVDINFGCPQGIARKGKYGSFLLEKTEIIRSLVTTLA 165
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 69 AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
E CD +DIN GCPQ +A++G YG++L + ++ L
Sbjct: 123 VENDCDAVDINFGCPQGIARKGKYGSFLLEKTEIIRSL 160
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 185 AEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
E CD DIN GCPQ +A++G YG++L + ++ L
Sbjct: 123 VENDCDAVDINFGCPQGIARKGKYGSFLLEKTEIIRSL 160
>gi|428182144|gb|EKX51006.1| hypothetical protein GUITHDRAFT_66485 [Guillardia theta CCMP2712]
Length = 312
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ++ L EA +LA HCD ID+N+GCPQ A R HYGA L ++ L++ +V
Sbjct: 98 VQFCSDEPDELLEAGRLARDHCDAIDLNLGCPQSQAARDHYGAVLMEEPELVSRMV 153
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 39 QDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
+DD PL +V F + L G L A HCD ID+N+GCPQ A R HYGA L +
Sbjct: 91 EDDRPL----IVQFCSDEPDELLEAGRL--ARDHCDAIDLNLGCPQSQAARDHYGAVLME 144
Query: 99 DWPLLTEL 106
+ L++ +
Sbjct: 145 EPELVSRM 152
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
HCD ID+N+GCPQ A R HYGA L ++ L++ +V S
Sbjct: 118 HCDAIDLNLGCPQSQAARDHYGAVLMEEPELVSRMVRRAS 157
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 164 QDDWPLLTNLVY-SPNMVHFV--IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLT 220
+DD PL+ P+ + +A HCD D+N+GCPQ A R HYGA L ++ L++
Sbjct: 91 EDDRPLIVQFCSDEPDELLEAGRLARDHCDAIDLNLGCPQSQAARDHYGAVLMEEPELVS 150
Query: 221 ELGKMA 226
+ + A
Sbjct: 151 RMVRRA 156
>gi|269860977|ref|XP_002650205.1| tRNA-dihydrouridine synthase 1 [Enterocytozoon bieneusi H348]
gi|220066379|gb|EED43863.1| tRNA-dihydrouridine synthase 1 [Enterocytozoon bieneusi H348]
Length = 309
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 38/58 (65%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ CGND + + +CD IDIN+GCPQ +AK+G+YG+YL DD+ + N++ +
Sbjct: 55 IQICGNDPSEMLATCLQIQQYCDAIDINLGCPQNIAKKGNYGSYLMDDFEKVKNIIST 112
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFI 68
++ + +CD IDIN+GCPQ +AK+G+YG+YL DD+ + + +S P+F
Sbjct: 70 LQIQQYCDAIDINLGCPQNIAKKGNYGSYLMDDFEKVKNI------ISTLAEQLTVPIFC 123
Query: 69 AEPHCDGIDINIGCPQMVAKRG 90
+ I+ I +M+ K G
Sbjct: 124 KIRVFESIEKTITYAKMIEKSG 145
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 29/37 (78%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ +CD IDIN+GCPQ +AK+G+YG+YL DD+ + +
Sbjct: 73 QQYCDAIDINLGCPQNIAKKGNYGSYLMDDFEKVKNI 109
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ +CD DIN+GCPQ +AK+G+YG+YL DD+ + +
Sbjct: 73 QQYCDAIDINLGCPQNIAKKGNYGSYLMDDFEKVKNI 109
>gi|323508721|dbj|BAJ77254.1| cgd1_3440 [Cryptosporidium parvum]
Length = 407
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%)
Query: 105 ELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 164
E F+T + FCGND + L +A+K + GIDIN GCPQ +AKRG+YGA+L
Sbjct: 62 ETNFQTCEEDDPMIVQFCGNDPETLVKASKFIDDKVKGIDINFGCPQNIAKRGNYGAFLL 121
Query: 165 DDWPLLTNLV 174
+ L+ ++
Sbjct: 122 SNPDLMERII 131
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 17 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
GIDIN GCPQ +AKRG+YGA+L + L+ ++ S
Sbjct: 99 GIDINFGCPQNIAKRGNYGAFLLSNPDLMERIISTLS 135
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 75 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
GIDIN GCPQ +AKRG+YGA+L + L+ +
Sbjct: 99 GIDINFGCPQNIAKRGNYGAFLLSNPDLMERI 130
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 191 GNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
G DIN GCPQ +AKRG+YGA+L + L+ +
Sbjct: 99 GIDINFGCPQNIAKRGNYGAFLLSNPDLMERI 130
>gi|66362388|ref|XP_628158.1| Dus1p, tRNA dihydrouridine synthase [Cryptosporidium parvum Iowa
II]
gi|46227613|gb|EAK88548.1| Dus1p, tRNA dihydrouridine synthase [Cryptosporidium parvum Iowa
II]
Length = 409
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 42/70 (60%)
Query: 105 ELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 164
E F+T + FCGND + L +A+K + GIDIN GCPQ +AKRG+YGA+L
Sbjct: 64 ETNFQTCEEDDPMIVQFCGNDPETLVKASKFIDDKVKGIDINFGCPQNIAKRGNYGAFLL 123
Query: 165 DDWPLLTNLV 174
+ L+ ++
Sbjct: 124 SNPDLMERII 133
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 17 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
GIDIN GCPQ +AKRG+YGA+L + L+ ++ S
Sbjct: 101 GIDINFGCPQNIAKRGNYGAFLLSNPDLMERIISTLS 137
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 75 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
GIDIN GCPQ +AKRG+YGA+L + L+ +
Sbjct: 101 GIDINFGCPQNIAKRGNYGAFLLSNPDLMERI 132
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 191 GNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
G DIN GCPQ +AKRG+YGA+L + L+ +
Sbjct: 101 GIDINFGCPQNIAKRGNYGAFLLSNPDLMERI 132
>gi|221484010|gb|EEE22314.1| dihydrouridine synthase domain-containing protein, putative
[Toxoplasma gondii GT1]
Length = 608
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCG+ L AA+L E + +D+N GCPQ +A+RGHYGA+L ++ LL ++V +
Sbjct: 213 VQFCGDSPATLLAAAQLVEDEVEAVDVNFGCPQGIARRGHYGAFLLNEPELLVDIVST 270
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E + +D+N GCPQ +A+RGHYGA+L ++ LL ++V
Sbjct: 230 VEDEVEAVDVNFGCPQGIARRGHYGAFLLNEPELLVDIV 268
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHM 114
+ E + +D+N GCPQ +A+RGHYGA+L ++ LL ++ H+
Sbjct: 229 LVEDEVEAVDVNFGCPQGIARRGHYGAFLLNEPELLVDIVSTLHKHL 275
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E + D+N GCPQ +A+RGHYGA+L ++ LL ++
Sbjct: 229 LVEDEVEAVDVNFGCPQGIARRGHYGAFLLNEPELLVDI 267
>gi|67588468|ref|XP_665355.1| ENSANGP00000019228 [Cryptosporidium hominis TU502]
gi|54656003|gb|EAL35125.1| ENSANGP00000019228 [Cryptosporidium hominis]
Length = 384
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FCGND + L +A+K + GIDIN GCPQ +AKRG+YGA+L + L+ ++
Sbjct: 53 VQFCGNDPETLVKASKFIDDKVKGIDINFGCPQNIAKRGNYGAFLLSNPDLMERII 108
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 17 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
GIDIN GCPQ +AKRG+YGA+L + L+ ++ S
Sbjct: 76 GIDINFGCPQNIAKRGNYGAFLLSNPDLMERIISTLS 112
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 75 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
GIDIN GCPQ +AKRG+YGA+L + L+ +
Sbjct: 76 GIDINFGCPQNIAKRGNYGAFLLSNPDLMERI 107
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 191 GNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
G DIN GCPQ +AKRG+YGA+L + L+ +
Sbjct: 76 GIDINFGCPQNIAKRGNYGAFLLSNPDLMERI 107
>gi|387193867|gb|AFJ68726.1| dihydrouridine synthase, partial [Nannochloropsis gaditana CCMP526]
Length = 371
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
F G+ + L AA L + D +D+N+GCPQ +AKRGHYGAYL ++ L+ L+
Sbjct: 45 FAGDSADELVRAASLIQHEVDAVDLNLGCPQRIAKRGHYGAYLLEERNLVVRLL 98
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHF 52
D +D+N+GCPQ +AKRGHYGAYL ++ L+ L+ H
Sbjct: 63 EVDAVDLNLGCPQRIAKRGHYGAYLLEERNLVVRLLSHM 101
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELG 107
L+ F+ S + + L + D +D+N+GCPQ +AKRGHYGAYL ++ L+ L
Sbjct: 41 LIAQFAGDSADELVRAASLI--QHEVDAVDLNLGCPQRIAKRGHYGAYLLEERNLVVRL- 97
Query: 108 FKTRSHMCGH 117
SHM H
Sbjct: 98 ---LSHMVKH 104
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 188 HCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
D D+N+GCPQ +AKRGHYGAYL ++ L+ L
Sbjct: 63 EVDAVDLNLGCPQRIAKRGHYGAYLLEERNLVVRL 97
>gi|348664853|gb|EGZ04692.1| hypothetical protein PHYSODRAFT_358103 [Phytophthora sojae]
Length = 287
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 166
+ FCGND K + AAK+ E HCD +D+N+GCPQ +A++G+YG++L D
Sbjct: 75 VQFCGND-KTVLAAAKMVEGHCDAVDLNLGCPQGIARKGNYGSFLMHD 121
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
LVV F N + + E HCD +D+N+GCPQ +A++G+YG++L D
Sbjct: 73 LVVQFCG---NDKTVLAAAKMVEGHCDAVDLNLGCPQGIARKGNYGSFLMHD 121
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 41
E HCD +D+N+GCPQ +A++G+YG++L D
Sbjct: 91 VEGHCDAVDLNLGCPQGIARKGNYGSFLMHD 121
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 166 DWPLLTNLVYSPNMVHFV--IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD 215
D PL+ + V + E HCD D+N+GCPQ +A++G+YG++L D
Sbjct: 70 DRPLVVQFCGNDKTVLAAAKMVEGHCDAVDLNLGCPQGIARKGNYGSFLMHD 121
>gi|237836529|ref|XP_002367562.1| dihydrouridine synthase domain-containing protein [Toxoplasma
gondii ME49]
gi|211965226|gb|EEB00422.1| dihydrouridine synthase domain-containing protein [Toxoplasma
gondii ME49]
Length = 540
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCG+ L AA+L E + +D+N GCPQ +A+RGHYGA+L ++ LL ++V +
Sbjct: 145 VQFCGDSPATLLAAAQLVEDEVEAVDVNFGCPQGIARRGHYGAFLLNEPELLVDIVST 202
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E + +D+N GCPQ +A+RGHYGA+L ++ LL ++V
Sbjct: 162 VEDEVEAVDVNFGCPQGIARRGHYGAFLLNEPELLVDIV 200
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHM 114
+ E + +D+N GCPQ +A+RGHYGA+L ++ LL ++ H+
Sbjct: 161 LVEDEVEAVDVNFGCPQGIARRGHYGAFLLNEPELLVDIVSTLHKHL 207
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E + D+N GCPQ +A+RGHYGA+L ++ LL ++
Sbjct: 161 LVEDEVEAVDVNFGCPQGIARRGHYGAFLLNEPELLVDI 199
>gi|443896032|dbj|GAC73376.1| tRNA-dihydrouridine synthase [Pseudozyma antarctica T-34]
Length = 366
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYS 176
+ GND L +AA+ P D ID+N+GCPQ A++G YGAYL + +WPLL+ +V +
Sbjct: 90 VQLAGNDVDELVDAARKVAPFADAIDLNLGCPQRHAEQGKYGAYLLPKQNWPLLSQIVSA 149
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELV 49
+ P D ID+N+GCPQ A++G YGAYL + +WPLL+++V
Sbjct: 106 KVAPFADAIDLNLGCPQRHAEQGKYGAYLLPKQNWPLLSQIV 147
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 106
P D ID+N+GCPQ A++G YGAYL + +WPLL+++
Sbjct: 109 PFADAIDLNLGCPQRHAEQGKYGAYLLPKQNWPLLSQI 146
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 222
P D D+N+GCPQ A++G YGAYL + +WPLL+++
Sbjct: 109 PFADAIDLNLGCPQRHAEQGKYGAYLLPKQNWPLLSQI 146
>gi|299742242|ref|XP_001832336.2| t-diRNAhydrouridine synthase [Coprinopsis cinerea okayama7#130]
gi|298405094|gb|EAU89497.2| t-diRNAhydrouridine synthase [Coprinopsis cinerea okayama7#130]
Length = 349
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 123 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYS 176
GND + +A + + CDGID+N+GCPQ A+ HYGAYL Q DWPL+ +V S
Sbjct: 62 GNDPDLVVQAGRKMQQWCDGIDLNLGCPQEAARDAHYGAYLLGQRDWPLVEQIVSS 117
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 29/37 (78%), Gaps = 2/37 (5%)
Query: 15 CDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELV 49
CDGID+N+GCPQ A+ HYGAYL Q DWPL+ ++V
Sbjct: 79 CDGIDLNLGCPQEAARDAHYGAYLLGQRDWPLVEQIV 115
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 73 CDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELGFKTRSHM---CGHSLMFCGNDSK 127
CDGID+N+GCPQ A+ HYGAYL Q DWPL+ ++ + C + C K
Sbjct: 79 CDGIDLNLGCPQEAARDAHYGAYLLGQRDWPLVEQIVSSMATSFTVPCSAKIRLCQPVGK 138
Query: 128 NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGA 161
+ +L I ++ + A+R GA
Sbjct: 139 TSEFSQRLEAQGASWITLHART--VSARRRRQGA 170
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 2/36 (5%)
Query: 189 CDGNDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 222
CDG D+N+GCPQ A+ HYGAYL Q DWPL+ ++
Sbjct: 79 CDGIDLNLGCPQEAARDAHYGAYLLGQRDWPLVEQI 114
>gi|219117564|ref|XP_002179575.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408628|gb|EEC48561.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 233
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
CG D + + A +P+CDGIDIN GCPQ +AKRG+YGA+L + +L LV++
Sbjct: 62 ICGGDVQAVVACALAMQPYCDGIDINCGCPQNIAKRGNYGAFLLEQEDVLLPLVHT 117
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 36/49 (73%), Gaps = 4/49 (8%)
Query: 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYL--QDD--WPLLTELVVHFS 53
+ +P+CDGIDIN GCPQ +AKRG+YGA+L Q+D PL+ L+ H S
Sbjct: 75 LAMQPYCDGIDINCGCPQNIAKRGNYGAFLLEQEDVLLPLVHTLLQHLS 123
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHM 114
+P+CDGIDIN GCPQ +AKRG+YGA+L + +L L H+
Sbjct: 78 QPYCDGIDINCGCPQNIAKRGNYGAFLLEQEDVLLPLVHTLLQHL 122
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+P+CDG DIN GCPQ +AKRG+YGA+L + +L L
Sbjct: 78 QPYCDGIDINCGCPQNIAKRGNYGAFLLEQEDVLLPL 114
>gi|393245788|gb|EJD53298.1| FMN-linked oxidoreductase [Auricularia delicata TFB-10046 SS5]
Length = 269
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 37/55 (67%), Gaps = 3/55 (5%)
Query: 123 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTNLV 174
GND + + AA++ EP+CD +D+N+GCPQ A GHYG YL + DWP + +V
Sbjct: 80 GNDPETMCAAARIVEPYCDAVDVNLGCPQQHACDGHYGGYLIQARRDWPTVEAIV 134
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTELGFKTRSHM---CGHSLMF 121
I EP+CD +D+N+GCPQ A GHYG YL + DWP + + + S + +
Sbjct: 92 IVEPYCDAVDVNLGCPQQHACDGHYGGYLIQARRDWPTVEAIVAQLHSALNVPLHVKIRL 151
Query: 122 CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 160
C S A +LA I ++ + A+R +G
Sbjct: 152 CSTASMTAELAVRLARAGASVIALH--ARHVSARRRRHG 188
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTELVVHF 52
EP+CD +D+N+GCPQ A GHYG YL + DWP + +V
Sbjct: 93 VEPYCDAVDVNLGCPQQHACDGHYGGYLIQARRDWPTVEAIVAQL 137
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYL---QDDWPLLTEL 222
I EP+CD D+N+GCPQ A GHYG YL + DWP + +
Sbjct: 92 IVEPYCDAVDVNLGCPQQHACDGHYGGYLIQARRDWPTVEAI 133
>gi|298715097|emb|CBJ27785.1| dihydrouridine synthase [Ectocarpus siliculosus]
Length = 450
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 39/58 (67%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FCGN+ + AA+ E CD +D+N+GCPQ +AK+G+YGAYL + L ++V +
Sbjct: 157 VQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAA 214
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
E CD +D+N+GCPQ +AK+G+YGAYL + L ++V S
Sbjct: 174 VEHRCDAVDLNLGCPQKIAKKGNYGAYLLPNPQLCEDIVAAMS 216
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
+R G ++D PL+ + + N + E CD +D+N+GCPQ +AK+
Sbjct: 141 RRRFDGVDDEEDRPLIVQ------FCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKK 194
Query: 90 GHYGAYL 96
G+YGAYL
Sbjct: 195 GNYGAYL 201
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 155 KRGHYGAYLQDDWPLLTNLV-YSPNMVHFVI--AEPHCDGNDINIGCPQMVAKRGHYGAY 211
+R G ++D PL+ +P+ V E CD D+N+GCPQ +AK+G+YGAY
Sbjct: 141 RRRFDGVDDEEDRPLIVQFCGNNPDTVVRAARHVEHRCDAVDLNLGCPQKIAKKGNYGAY 200
Query: 212 L 212
L
Sbjct: 201 L 201
>gi|399216637|emb|CCF73324.1| unnamed protein product [Babesia microti strain RI]
Length = 360
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 11/84 (13%)
Query: 91 HYGAYLQDDWPLLTELGFKTRSHMCGHSL--------MFCGNDSKNLTEAAKLAEPHCDG 142
H Y D LT ++ ++ H+L FCGN+ + AA++ E D
Sbjct: 65 HARYYNSDSRNFLTSKTYRDKNF---HTLPQDRPLFAQFCGNNPDTIVRAARIIESEIDA 121
Query: 143 IDINIGCPQMVAKRGHYGAYLQDD 166
+DIN GCPQ +A+RG+YGA+L D+
Sbjct: 122 VDINFGCPQEIARRGNYGAFLLDN 145
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
E D +DIN GCPQ +A+RG+YGA+L D+ + E++ S
Sbjct: 116 ESEIDAVDINFGCPQEIARRGNYGAFLLDNPQSMCEIISTLS 157
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
I E D +DIN GCPQ +A+RG+YGA+L D+ + E+
Sbjct: 114 IIESEIDAVDINFGCPQEIARRGNYGAFLLDNPQSMCEI 152
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
I E D DIN GCPQ +A+RG+YGA+L D+ + E+
Sbjct: 114 IIESEIDAVDINFGCPQEIARRGNYGAFLLDNPQSMCEI 152
>gi|429328565|gb|AFZ80325.1| hypothetical protein BEWA_031780 [Babesia equi]
Length = 354
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 28/120 (23%)
Query: 88 KRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINI 147
++ H+ +DD PL+ + FCGND + L AA++ + IDIN
Sbjct: 61 RKTHFQTS-EDDRPLIAQ---------------FCGNDPQTLVNAARIIKDDVSAIDINC 104
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCP-QMVAKRG 206
GCPQ +A++G YGAYL D ++T++V + V A+ DIN+ C ++V K
Sbjct: 105 GCPQGIARKGKYGAYLLDFPNVITSIVQT------VTAQV-----DINVTCKIRLVEKES 153
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
++ H+ +DD PL+ + + + + I + IDIN GCPQ +A++
Sbjct: 61 RKTHFQTS-EDDRPLIAQ------FCGNDPQTLVNAARIIKDDVSAIDINCGCPQGIARK 113
Query: 90 GHYGAYLQDDWPLLTEL 106
G YGAYL D ++T +
Sbjct: 114 GKYGAYLLDFPNVITSI 130
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 16 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
IDIN GCPQ +A++G YGAYL D ++T +V
Sbjct: 98 SAIDINCGCPQGIARKGKYGAYLLDFPNVITSIV 131
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 193 DINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
DIN GCPQ +A++G YGAYL D ++T +
Sbjct: 101 DINCGCPQGIARKGKYGAYLLDFPNVITSI 130
>gi|71003213|ref|XP_756287.1| hypothetical protein UM00140.1 [Ustilago maydis 521]
gi|46096292|gb|EAK81525.1| hypothetical protein UM00140.1 [Ustilago maydis 521]
Length = 364
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLV 174
+ GN+ + L EAA+ P+ D ID+N+GCPQ A++GHYGA L + +WPL+ +V
Sbjct: 90 VQLAGNNVQQLVEAARRVAPYADAIDLNLGCPQRHAEQGHYGACLLPKQNWPLVAEIV 147
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 30/39 (76%), Gaps = 2/39 (5%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELV 49
P+ D ID+N+GCPQ A++GHYGA L + +WPL+ E+V
Sbjct: 109 PYADAIDLNLGCPQRHAEQGHYGACLLPKQNWPLVAEIV 147
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 106
P+ D ID+N+GCPQ A++GHYGA L + +WPL+ E+
Sbjct: 109 PYADAIDLNLGCPQRHAEQGHYGACLLPKQNWPLVAEI 146
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 28/38 (73%), Gaps = 2/38 (5%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 222
P+ D D+N+GCPQ A++GHYGA L + +WPL+ E+
Sbjct: 109 PYADAIDLNLGCPQRHAEQGHYGACLLPKQNWPLVAEI 146
>gi|207342565|gb|EDZ70296.1| YML080Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 135
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGA 161
+ FC ND + L AAKL E CD +D+N+GCPQ +AK+GHYG+
Sbjct: 91 VQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGS 133
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 37 YLQDDWPLL------TELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRG 90
Y +D+W L LVV F + + + + E CD +D+N+GCPQ +AK+G
Sbjct: 72 YREDNWSSLDGSSVDRPLVVQF--CANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKG 129
Query: 91 HYGA 94
HYG+
Sbjct: 130 HYGS 133
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 13/62 (20%)
Query: 162 YLQDDWPLLT-NLVYSPNMVHFVIAEPH------------CDGNDINIGCPQMVAKRGHY 208
Y +D+W L + V P +V F +P CD D+N+GCPQ +AK+GHY
Sbjct: 72 YREDNWSSLDGSSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHY 131
Query: 209 GA 210
G+
Sbjct: 132 GS 133
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGA 36
E CD +D+N+GCPQ +AK+GHYG+
Sbjct: 108 VEDKCDAVDLNLGCPQGIAKKGHYGS 133
>gi|302833555|ref|XP_002948341.1| hypothetical protein VOLCADRAFT_80128 [Volvox carteri f.
nagariensis]
gi|300266561|gb|EFJ50748.1| hypothetical protein VOLCADRAFT_80128 [Volvox carteri f.
nagariensis]
Length = 422
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 119 LMFCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FC ++ ++L AA+L + D IDIN GCPQ +AKRG YGA+L DD P + +LV
Sbjct: 106 VQFCAHEPQHLLAAARLVQDSGVADAIDINFGCPQRIAKRGGYGAFLMDDLPRVESLV 163
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 25/34 (73%)
Query: 16 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
D IDIN GCPQ +AKRG YGA+L DD P + LV
Sbjct: 130 DAIDINFGCPQRIAKRGGYGAFLMDDLPRVESLV 163
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 39 QDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
+D PLL + H L L D IDIN GCPQ +AKRG YGA+L D
Sbjct: 99 SEDRPLLVQFCAH----EPQHLLAAARLVQDSGVADAIDINFGCPQRIAKRGGYGAFLMD 154
Query: 99 DWPLLTEL 106
D P + L
Sbjct: 155 DLPRVESL 162
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%)
Query: 190 DGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225
D DIN GCPQ +AKRG YGA+L DD P + L ++
Sbjct: 130 DAIDINFGCPQRIAKRGGYGAFLMDDLPRVESLVRV 165
>gi|440492298|gb|ELQ74875.1| tRNA-dihydrouridine synthase [Trachipleistophora hominis]
Length = 314
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ CGND + +AA+ ID+N GCPQ++AKRG+YGAYLQDDW L + ++ S
Sbjct: 66 VQICGNDPCVMRKAAEYFTGAL-AIDVNFGCPQLIAKRGNYGAYLQDDWQLTSEILKS 122
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 32/41 (78%)
Query: 17 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK 57
ID+N GCPQ++AKRG+YGAYLQDDW L +E++ S + +
Sbjct: 88 AIDVNFGCPQLIAKRGNYGAYLQDDWQLTSEILKSLSSLEQ 128
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 33/52 (63%), Gaps = 8/52 (15%)
Query: 55 VSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ K F G L ID+N GCPQ++AKRG+YGAYLQDDW L +E+
Sbjct: 76 MRKAAEYFTGAL--------AIDVNFGCPQLIAKRGNYGAYLQDDWQLTSEI 119
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 28/32 (87%)
Query: 193 DINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224
D+N GCPQ++AKRG+YGAYLQDDW L +E+ K
Sbjct: 90 DVNFGCPQLIAKRGNYGAYLQDDWQLTSEILK 121
>gi|300706707|ref|XP_002995598.1| hypothetical protein NCER_101453 [Nosema ceranae BRL01]
gi|239604766|gb|EEQ81927.1| hypothetical protein NCER_101453 [Nosema ceranae BRL01]
Length = 327
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ CGND + + + + + +CD IDIN+GCPQ +A++G+YG++L DD + +V
Sbjct: 71 IQICGNDVNKMLKVSLILQEYCDAIDINLGCPQEIARKGNYGSFLMDDLLKVKEIV 126
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
+ +CD IDIN+GCPQ +A++G+YG++L DD + E+V S
Sbjct: 89 QEYCDAIDINLGCPQEIARKGNYGSFLMDDLLKVKEIVTVLS 130
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 67 FIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
I + +CD IDIN+GCPQ +A++G+YG++L DD + E+
Sbjct: 86 LILQEYCDAIDINLGCPQEIARKGNYGSFLMDDLLKVKEI 125
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 6/52 (11%)
Query: 183 VIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGILDN 234
+I + +CD DIN+GCPQ +A++G+YG++L DD L K+ +V +L N
Sbjct: 86 LILQEYCDAIDINLGCPQEIARKGNYGSFLMDD------LLKVKEIVTVLSN 131
>gi|124808213|ref|XP_001348259.1| tRNA-dihydrouridine synthase, putative [Plasmodium falciparum 3D7]
gi|23497150|gb|AAN36698.1| tRNA-dihydrouridine synthase, putative [Plasmodium falciparum 3D7]
Length = 340
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
FCGNDSK L EA + + +DIN+GCPQ +AK+G+YGA+L + NL+
Sbjct: 87 FCGNDSKILLEAINFIKDDVNAVDINLGCPQQIAKKGNYGAFLLHKHDEVVNLI 140
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 58 NGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYL 96
+ + + + + + +DIN+GCPQ +AK+G+YGA+L
Sbjct: 91 DSKILLEAINFIKDDVNAVDINLGCPQQIAKKGNYGAFL 129
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 21/23 (91%)
Query: 16 DGIDINIGCPQMVAKRGHYGAYL 38
+ +DIN+GCPQ +AK+G+YGA+L
Sbjct: 107 NAVDINLGCPQQIAKKGNYGAFL 129
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/20 (70%), Positives = 19/20 (95%)
Query: 193 DINIGCPQMVAKRGHYGAYL 212
DIN+GCPQ +AK+G+YGA+L
Sbjct: 110 DINLGCPQQIAKKGNYGAFL 129
>gi|118399013|ref|XP_001031833.1| dihydrouridine synthase [Tetrahymena thermophila]
gi|89286167|gb|EAR84170.1| dihydrouridine synthase [Tetrahymena thermophila SB210]
Length = 444
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 33/55 (60%)
Query: 120 MFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
FCGN+ L A+ E CD IDIN GCPQ +AKRG YG+YL + + LV
Sbjct: 133 QFCGNNPDALLAGARYVEDKCDAIDINFGCPQGIAKRGRYGSYLLSEPDTIVALV 187
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 10/60 (16%)
Query: 39 QDDWPLLTELVVHFSWVSKNGP--LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYL 96
Q+D PL F+ N P L G ++ E CD IDIN GCPQ +AKRG YG+YL
Sbjct: 125 QEDRPL-------FAQFCGNNPDALLAGARYV-EDKCDAIDINFGCPQGIAKRGRYGSYL 176
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD IDIN GCPQ +AKRG YG+YL + + LV
Sbjct: 149 VEDKCDAIDINFGCPQGIAKRGRYGSYLLSEPDTIVALV 187
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 20/28 (71%)
Query: 185 AEPHCDGNDINIGCPQMVAKRGHYGAYL 212
E CD DIN GCPQ +AKRG YG+YL
Sbjct: 149 VEDKCDAIDINFGCPQGIAKRGRYGSYL 176
>gi|313238054|emb|CBY13173.1| unnamed protein product [Oikopleura dioica]
Length = 575
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ-DDWPLLTNLVYSP 177
+ ND K EA ++ + CD +D+N+GCPQ +A+RG YGA++ W L++ L+ +
Sbjct: 78 VQMAANDVKLFLEAIRIVKDFCDAVDLNLGCPQHIARRGGYGAFMMLGSWELISELIQAG 137
Query: 178 NMVHFVIAE 186
+ +H + +
Sbjct: 138 SKIHRITVK 146
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 50 VHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ-DDWPLLTEL 106
V + + LF+ + I + CD +D+N+GCPQ +A+RG YGA++ W L++EL
Sbjct: 76 VFVQMAANDVKLFLEAIRIVKDFCDAVDLNLGCPQHIARRGGYGAFMMLGSWELISEL 133
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 28/36 (77%), Gaps = 1/36 (2%)
Query: 15 CDGIDINIGCPQMVAKRGHYGAYLQ-DDWPLLTELV 49
CD +D+N+GCPQ +A+RG YGA++ W L++EL+
Sbjct: 99 CDAVDLNLGCPQHIARRGGYGAFMMLGSWELISELI 134
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQ-DDWPLLTEL 222
I + CD D+N+GCPQ +A+RG YGA++ W L++EL
Sbjct: 94 IVKDFCDAVDLNLGCPQHIARRGGYGAFMMLGSWELISEL 133
>gi|224002192|ref|XP_002290768.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220974190|gb|EED92520.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 615
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYS 176
F N ++ +AAKL E +CD ID+N+GCPQ A GH+G+YL Q D L+ ++V +
Sbjct: 152 FSANQPQDFAKAAKLVEKYCDAIDLNLGCPQRTAFIGHFGSYLLGQKDRKLVLSIVRA 209
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 41 DWPLLTELVVHFSWVSKNGPL-FMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYL--Q 97
D L LV HFS N P F + E +CD ID+N+GCPQ A GH+G+YL Q
Sbjct: 141 DSNLYRPLVCHFSA---NQPQDFAKAAKLVEKYCDAIDLNLGCPQRTAFIGHFGSYLLGQ 197
Query: 98 DDWPLL 103
D L+
Sbjct: 198 KDRKLV 203
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELV 49
E +CD ID+N+GCPQ A GH+G+YL Q D L+ +V
Sbjct: 168 EKYCDAIDLNLGCPQRTAFIGHFGSYLLGQKDRKLVLSIV 207
Score = 43.1 bits (100), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 22/120 (18%)
Query: 104 TELGFKTRSHMCGHSLMFC--GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGA 161
+EL F+ G +L + + S+ + EAA + D N+ P + H+ A
Sbjct: 102 SELAFRLLCRKYGATLSYTPMMSSSQFVQEAASMKNTVADS---NLYRPLVC----HFSA 154
Query: 162 YLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYL--QDDWPLL 219
D+ LV E +CD D+N+GCPQ A GH+G+YL Q D L+
Sbjct: 155 NQPQDFAKAAKLV-----------EKYCDAIDLNLGCPQRTAFIGHFGSYLLGQKDRKLV 203
>gi|294886251|ref|XP_002771632.1| Dus1p, putative [Perkinsus marinus ATCC 50983]
gi|239875338|gb|EER03448.1| Dus1p, putative [Perkinsus marinus ATCC 50983]
Length = 720
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 105 ELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 164
E F+T + FCG+D + EAAK E ID+N+GCPQ +A+RGHYG++L
Sbjct: 355 EKNFETAPGDSPLAAQFCGDDGDVIVEAAKHIEDQVSCIDLNLGCPQGIARRGHYGSFLL 414
Query: 165 DDWPLLTNLV 174
++ L+ +V
Sbjct: 415 EEPELVLRIV 424
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Query: 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
IE + C ID+N+GCPQ +A+RGHYG++L ++ L+ +V
Sbjct: 386 IEDQVSC--IDLNLGCPQGIARRGHYGSFLLEEPELVLRIV 424
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
E ID+N+GCPQ +A+RGHYG++L ++ L+ +
Sbjct: 387 EDQVSCIDLNLGCPQGIARRGHYGSFLLEEPELVLRI 423
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Query: 193 DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGI 231
D+N+GCPQ +A+RGHYG++L ++ L+ + + M+ GI
Sbjct: 394 DLNLGCPQGIARRGHYGSFLLEEPELVLRIVE-KMVKGI 431
>gi|429966082|gb|ELA48079.1| hypothetical protein VCUG_00502 [Vavraia culicis 'floridensis']
Length = 315
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 32/41 (78%)
Query: 17 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK 57
+D+N GCPQ++AKRG+YGAYLQ+DW L +E++ S + +
Sbjct: 88 AVDVNFGCPQLIAKRGNYGAYLQNDWQLTSEIIKRLSSLER 128
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ CGND + +AA+ +D+N GCPQ++AKRG+YGAYLQ+DW L + ++
Sbjct: 66 VQICGNDPCVMRKAAEHFTSAL-AVDVNFGCPQLIAKRGNYGAYLQNDWQLTSEII 120
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 28/32 (87%)
Query: 75 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+D+N GCPQ++AKRG+YGAYLQ+DW L +E+
Sbjct: 88 AVDVNFGCPQLIAKRGNYGAYLQNDWQLTSEI 119
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 28/32 (87%)
Query: 193 DINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224
D+N GCPQ++AKRG+YGAYLQ+DW L +E+ K
Sbjct: 90 DVNFGCPQLIAKRGNYGAYLQNDWQLTSEIIK 121
>gi|407039419|gb|EKE39634.1| dihydrouridine synthase (Dus) family protein [Entamoeba nuttalli
P19]
Length = 339
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
+ G+D+ + AK + +CD IDIN+GCPQ +A++G+YGAYL D+
Sbjct: 82 IQIVGSDANEMARTAKFLQSYCDAIDINLGCPQKIAQKGNYGAYLALDF 130
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 29/38 (76%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ +CD IDIN+GCPQ +A++G+YGAYL D+ E+V
Sbjct: 100 QSYCDAIDINLGCPQKIAQKGNYGAYLALDFDHTKEIV 137
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ +CD IDIN+GCPQ +A++G+YGAYL D+ E+
Sbjct: 100 QSYCDAIDINLGCPQKIAQKGNYGAYLALDFDHTKEI 136
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ +CD DIN+GCPQ +A++G+YGAYL D+ E+
Sbjct: 100 QSYCDAIDINLGCPQKIAQKGNYGAYLALDFDHTKEI 136
>gi|67479621|ref|XP_655192.1| dihydrouridine synthase (Dus) family protein [Entamoeba histolytica
HM-1:IMSS]
gi|56472312|gb|EAL49806.1| dihydrouridine synthase (Dus) family protein [Entamoeba histolytica
HM-1:IMSS]
gi|449704590|gb|EMD44804.1| tRNA-dihydrouridine synthase, putative [Entamoeba histolytica KU27]
Length = 339
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
+ G+D+ + AK + +CD IDIN+GCPQ +A++G+YGAYL D+
Sbjct: 82 IQIVGSDANEMARTAKFLQSYCDAIDINLGCPQKIAQKGNYGAYLALDF 130
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 29/38 (76%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ +CD IDIN+GCPQ +A++G+YGAYL D+ E+V
Sbjct: 100 QSYCDAIDINLGCPQKIAQKGNYGAYLALDFDHTKEIV 137
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ +CD IDIN+GCPQ +A++G+YGAYL D+ E+
Sbjct: 100 QSYCDAIDINLGCPQKIAQKGNYGAYLALDFDHTKEI 136
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ +CD DIN+GCPQ +A++G+YGAYL D+ E+
Sbjct: 100 QSYCDAIDINLGCPQKIAQKGNYGAYLALDFDHTKEI 136
>gi|398020245|ref|XP_003863286.1| dihydrouridine synthase (Dus), putative [Leishmania donovani]
gi|322501518|emb|CBZ36597.1| dihydrouridine synthase (Dus), putative [Leishmania donovani]
Length = 660
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 22/109 (20%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKR--GHYGAYLQDDWPL------L 170
+ FCGND+ + AA+ A +G A++ G GA + +P+ L
Sbjct: 217 VQFCGNDADTVLRAARFA---------VLGEQAAAAEQTSGSGGASVAPVYPVHVRVNGL 267
Query: 171 TNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLL 219
++ +P + + CD D+N+GCPQ +A+RGHYG++L +DW L+
Sbjct: 268 SSSEKAPEHLLY-----QCDAVDLNLGCPQGIARRGHYGSFLMEDWELI 311
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 31/38 (81%)
Query: 139 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
CD +D+N+GCPQ +A+RGHYG++L +DW L+ +V++
Sbjct: 280 QCDAVDLNLGCPQGIARRGHYGSFLMEDWELIHTIVHT 317
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 29/36 (80%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
CD +D+N+GCPQ +A+RGHYG++L +DW L+ +V
Sbjct: 280 QCDAVDLNLGCPQGIARRGHYGSFLMEDWELIHTIV 315
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 27/32 (84%)
Query: 72 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 103
CD +D+N+GCPQ +A+RGHYG++L +DW L+
Sbjct: 280 QCDAVDLNLGCPQGIARRGHYGSFLMEDWELI 311
>gi|167381962|ref|XP_001735922.1| tRNA-dihydrouridine synthase [Entamoeba dispar SAW760]
gi|165901877|gb|EDR27854.1| tRNA-dihydrouridine synthase, putative [Entamoeba dispar SAW760]
Length = 340
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
+ G+D+ + AK + +CD IDIN+GCPQ +A++G+YGAYL D+
Sbjct: 83 IQVVGSDANEMARTAKFLQSYCDAIDINLGCPQKIAQKGNYGAYLALDF 131
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 2 SEGGRDRIETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+E R + +CD IDIN+GCPQ +A++G+YGAYL D+ E+V
Sbjct: 91 NEMARTAKFLQSYCDAIDINLGCPQKIAQKGNYGAYLALDFDHTKEIV 138
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ +CD IDIN+GCPQ +A++G+YGAYL D+ E+
Sbjct: 101 QSYCDAIDINLGCPQKIAQKGNYGAYLALDFDHTKEI 137
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ +CD DIN+GCPQ +A++G+YGAYL D+ E+
Sbjct: 101 QSYCDAIDINLGCPQKIAQKGNYGAYLALDFDHTKEI 137
>gi|157873334|ref|XP_001685179.1| putative dihydrouridine synthase (Dus) [Leishmania major strain
Friedlin]
gi|68128250|emb|CAJ08381.1| putative dihydrouridine synthase (Dus) [Leishmania major strain
Friedlin]
Length = 661
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FCGND+ + AA+ A + Q + RG A + + L S
Sbjct: 217 VQFCGNDADTVLRAARFAVLG----EQAAAAEQTGSSRGASAAPVYPVHVRVNGLSCSEK 272
Query: 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLL 219
++ + CD D+N+GCPQ +A+RGHYG++L +DW L+
Sbjct: 273 APEHLLYQ--CDAVDVNLGCPQGIARRGHYGSFLMEDWELI 311
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 31/38 (81%)
Query: 139 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
CD +D+N+GCPQ +A+RGHYG++L +DW L+ +V++
Sbjct: 280 QCDAVDVNLGCPQGIARRGHYGSFLMEDWELIHTIVHT 317
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 29/36 (80%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
CD +D+N+GCPQ +A+RGHYG++L +DW L+ +V
Sbjct: 280 QCDAVDVNLGCPQGIARRGHYGSFLMEDWELIHTIV 315
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 27/32 (84%)
Query: 72 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 103
CD +D+N+GCPQ +A+RGHYG++L +DW L+
Sbjct: 280 QCDAVDVNLGCPQGIARRGHYGSFLMEDWELI 311
>gi|294937192|ref|XP_002782004.1| Dus1p, putative [Perkinsus marinus ATCC 50983]
gi|239893217|gb|EER13799.1| Dus1p, putative [Perkinsus marinus ATCC 50983]
Length = 438
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 105 ELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 164
E F+T + FCG+D + EAAK E ID+N+GCPQ +A+RGHYG++L
Sbjct: 73 EKNFETAPGDSPLAAQFCGDDGDVIVEAAKHIEDQVSCIDLNLGCPQGIARRGHYGSFLL 132
Query: 165 DDWPLLTNLV 174
++ L+ +V
Sbjct: 133 EEPELVLGIV 142
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Query: 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
IE + C ID+N+GCPQ +A+RGHYG++L ++ L+ +V
Sbjct: 104 IEDQVSC--IDLNLGCPQGIARRGHYGSFLLEEPELVLGIV 142
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 103
E ID+N+GCPQ +A+RGHYG++L ++ L+
Sbjct: 105 EDQVSCIDLNLGCPQGIARRGHYGSFLLEEPELV 138
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 23/27 (85%)
Query: 193 DINIGCPQMVAKRGHYGAYLQDDWPLL 219
D+N+GCPQ +A+RGHYG++L ++ L+
Sbjct: 112 DLNLGCPQGIARRGHYGSFLLEEPELV 138
>gi|146095124|ref|XP_001467487.1| putative dihydrouridine synthase (Dus) [Leishmania infantum JPCM5]
gi|134071852|emb|CAM70545.1| putative dihydrouridine synthase (Dus) [Leishmania infantum JPCM5]
Length = 660
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 22/109 (20%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKR--GHYGAYLQDDWPL------L 170
+ FCGND+ + AA+ A +G A++ G GA + +P+ L
Sbjct: 217 VQFCGNDADTVLRAARFA---------VLGEQAAAAEQTSGSGGASVAPVYPVHVRVNGL 267
Query: 171 TNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLL 219
++ +P + + CD D+N+GCPQ +A+RGHYG++L +DW L+
Sbjct: 268 SSSEKAPEHLLY-----QCDAVDLNLGCPQGIARRGHYGSFLMEDWELI 311
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 31/38 (81%)
Query: 139 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
CD +D+N+GCPQ +A+RGHYG++L +DW L+ +V++
Sbjct: 280 QCDAVDLNLGCPQGIARRGHYGSFLMEDWELIHTIVHT 317
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 29/36 (80%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
CD +D+N+GCPQ +A+RGHYG++L +DW L+ +V
Sbjct: 280 QCDAVDLNLGCPQGIARRGHYGSFLMEDWELIHTIV 315
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 27/32 (84%)
Query: 72 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 103
CD +D+N+GCPQ +A+RGHYG++L +DW L+
Sbjct: 280 QCDAVDLNLGCPQGIARRGHYGSFLMEDWELI 311
>gi|409076990|gb|EKM77358.1| hypothetical protein AGABI1DRAFT_77367 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 317
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYS 176
CGND + +A + + +C GI D+N+GCPQ +A+ GHYGAYL Q DW L+ +V S
Sbjct: 36 LCGNDPDAIVQAGRKLQNYCQGIVDLNLGCPQGLARDGHYGAYLLGQSDWSLVELIVSS 94
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 25/129 (19%)
Query: 12 EPHCDGI-DINIGCPQMVAKRGHYGAYL--QDDWPLLTELVVHFSWVSKNGPLFMGPLFI 68
+ +C GI D+N+GCPQ +A+ GHYGAYL Q DW L+ EL+ VS F P+ +
Sbjct: 52 QNYCQGIVDLNLGCPQGLARDGHYGAYLLGQSDWSLV-ELI-----VSSMAQSFTVPVSV 105
Query: 69 AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKN 128
C + ++ + H GA W +L R G S +
Sbjct: 106 KTRLCQP---QVKTLELYQRLEHCGA----SWLILHGRTISARRRRQG---------SAD 149
Query: 129 LTEAAKLAE 137
LTE +L E
Sbjct: 150 LTEVKRLKE 158
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 27/37 (72%), Gaps = 3/37 (8%)
Query: 186 EPHCDG-NDINIGCPQMVAKRGHYGAYL--QDDWPLL 219
+ +C G D+N+GCPQ +A+ GHYGAYL Q DW L+
Sbjct: 52 QNYCQGIVDLNLGCPQGLARDGHYGAYLLGQSDWSLV 88
>gi|440290437|gb|ELP83849.1| tRNA-dihydrouridine synthase, putative [Entamoeba invadens IP1]
Length = 357
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ G+D + AAKL +CD IDIN+GCPQ +A++G YGAYL D +V +
Sbjct: 82 IQIVGHDPDEMGRAAKLLSKYCDVIDINLGCPQKIAQKGQYGAYLSQDLSQTEKVVKA 139
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 3 EGGRDRIETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLF 62
E GR +CD IDIN+GCPQ +A++G YGAYL D TE VV + P++
Sbjct: 91 EMGRAAKLLSKYCDVIDINLGCPQKIAQKGQYGAYLSQDLS-QTEKVVKAVMKAVEVPVY 149
Query: 63 MGPLFIAEPHCDG---IDINIGC 82
+ ++E H +D+ + C
Sbjct: 150 C-KIRVSEDHEKTMKLVDMLVAC 171
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 72 HCDGIDINIGCPQMVAKRGHYGAYLQDD 99
+CD IDIN+GCPQ +A++G YGAYL D
Sbjct: 102 YCDVIDINLGCPQKIAQKGQYGAYLSQD 129
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 188 HCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAM 227
+CD DIN+GCPQ +A++G YGAYL D ++ K M
Sbjct: 102 YCDVIDINLGCPQKIAQKGQYGAYLSQDLSQTEKVVKAVM 141
>gi|167526513|ref|XP_001747590.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774036|gb|EDQ87670.1| predicted protein [Monosiga brevicollis MX1]
Length = 1116
Score = 57.4 bits (137), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 168
C ++ AA++ EP D ID+N+GCPQ AKR +GAYL DD P
Sbjct: 107 LCATKVEDFVAAAQILEPFVDAIDLNLGCPQNTAKREGFGAYLMDDLP 154
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 26/40 (65%)
Query: 62 FMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 101
F+ I EP D ID+N+GCPQ AKR +GAYL DD P
Sbjct: 115 FVAAAQILEPFVDAIDLNLGCPQNTAKREGFGAYLMDDLP 154
Score = 50.1 bits (118), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/32 (62%), Positives = 23/32 (71%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWP 43
EP D ID+N+GCPQ AKR +GAYL DD P
Sbjct: 123 EPFVDAIDLNLGCPQNTAKREGFGAYLMDDLP 154
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 164 QDDWPLLTNLVYSPNMVHFVIA----EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLL 219
+ D PL+ L + + FV A EP D D+N+GCPQ AKR +GAYL DD P +
Sbjct: 98 EQDRPLIAQLC-ATKVEDFVAAAQILEPFVDAIDLNLGCPQNTAKREGFGAYLMDDLPRV 156
Query: 220 TELGKMAMLV 229
+ + A V
Sbjct: 157 EAMLRAARAV 166
>gi|401426456|ref|XP_003877712.1| putative dihydrouridine synthase (Dus) [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493958|emb|CBZ29249.1| putative dihydrouridine synthase (Dus) [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 660
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 31/38 (81%)
Query: 139 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
CD +D+N+GCPQ +A+RGHYG++L +DW L+ +V++
Sbjct: 280 QCDAVDLNLGCPQGIARRGHYGSFLMEDWELIHTIVHT 317
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 29/36 (80%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
CD +D+N+GCPQ +A+RGHYG++L +DW L+ +V
Sbjct: 280 QCDAVDLNLGCPQGIARRGHYGSFLMEDWELIHTIV 315
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 18/107 (16%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL------LTN 172
+ FCGND+ + AA+ A + + G GA +P+ L++
Sbjct: 217 VQFCGNDADTVLRAARFAV-----LGEQAAATEQTGDNG--GASAAPVYPVHVRVNGLSS 269
Query: 173 LVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLL 219
+P + + CD D+N+GCPQ +A+RGHYG++L +DW L+
Sbjct: 270 SEKAPAHLLY-----QCDAVDLNLGCPQGIARRGHYGSFLMEDWELI 311
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 27/32 (84%)
Query: 72 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 103
CD +D+N+GCPQ +A+RGHYG++L +DW L+
Sbjct: 280 QCDAVDLNLGCPQGIARRGHYGSFLMEDWELI 311
>gi|323452795|gb|EGB08668.1| hypothetical protein AURANDRAFT_13024, partial [Aureococcus
anophagefferens]
Length = 224
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
F G+D + AA+L E D +++N GCPQ VAKRGH+GA+L D+ ++ +V +
Sbjct: 72 FAGDDPAAILAAARLVEHRVDVVELNCGCPQKVAKRGHFGAFLLDEPEVIVAVVRA 127
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E D +++N GCPQ VAKRGH+GA+L D+ ++ +V
Sbjct: 87 VEHRVDVVELNCGCPQKVAKRGHFGAFLLDEPEVIVAVV 125
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 35 GAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGA 94
GA D PL+ + + + + + E D +++N GCPQ VAKRGH+GA
Sbjct: 59 GAGAPADRPLVAQ------FAGDDPAAILAAARLVEHRVDVVELNCGCPQKVAKRGHFGA 112
Query: 95 YLQDD 99
+L D+
Sbjct: 113 FLLDE 117
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDD 215
+ E D ++N GCPQ VAKRGH+GA+L D+
Sbjct: 86 LVEHRVDVVELNCGCPQKVAKRGHFGAFLLDE 117
>gi|164659486|ref|XP_001730867.1| hypothetical protein MGL_1866 [Malassezia globosa CBS 7966]
gi|159104765|gb|EDP43653.1| hypothetical protein MGL_1866 [Malassezia globosa CBS 7966]
Length = 212
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYS 176
+ G+D + +AA+ P D ID+N+GCPQ A+ GHYG YL + +WPLL +V +
Sbjct: 87 VQLAGDDPEQFVQAARRFLPIADAIDLNLGCPQARARDGHYGGYLLKRREWPLLERIVQA 146
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELV 49
P D ID+N+GCPQ A+ GHYG YL + +WPLL +V
Sbjct: 106 PIADAIDLNLGCPQARARDGHYGGYLLKRREWPLLERIV 144
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 106
P D ID+N+GCPQ A+ GHYG YL + +WPLL +
Sbjct: 106 PIADAIDLNLGCPQARARDGHYGGYLLKRREWPLLERI 143
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 187 PHCDGNDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 222
P D D+N+GCPQ A+ GHYG YL + +WPLL +
Sbjct: 106 PIADAIDLNLGCPQARARDGHYGGYLLKRREWPLLERI 143
>gi|428186121|gb|EKX54972.1| hypothetical protein GUITHDRAFT_156831 [Guillardia theta CCMP2712]
Length = 261
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 21/135 (15%)
Query: 61 LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTE--------LGFKTRS 112
L P+ + C + ++ +++ +R +GA L L +E L K +S
Sbjct: 9 LCAAPMVVHTGSCPFLADSLVGSRILTRR--WGASLAYSEMLFSERIVEEEDYLAEKLQS 66
Query: 113 HMCGHSLM--FCGNDSKNLTEAAKLAEPHC-------DGIDINIGCPQMVAKRGHYGAYL 163
M L+ CGND + AA L E C D IDIN+GCPQ A GHYG+YL
Sbjct: 67 CMEDRPLIVQICGNDPSIMARAACLIEDFCNNKSHGVDAIDINLGCPQKRAAEGHYGSYL 126
Query: 164 --QDDWPLLTNLVYS 176
+ DW L+ +V S
Sbjct: 127 LEKKDWKLVQEIVES 141
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 16 DGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELVVHFS 53
D IDIN+GCPQ A GHYG+YL + DW L+ E+V S
Sbjct: 104 DAIDINLGCPQKRAAEGHYGSYLLEKKDWKLVQEIVESMS 143
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 190 DGNDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 222
D DIN+GCPQ A GHYG+YL + DW L+ E+
Sbjct: 104 DAIDINLGCPQKRAAEGHYGSYLLEKKDWKLVQEI 138
>gi|401406011|ref|XP_003882455.1| dihydrouridine synthase domain-containing protein [Neospora caninum
Liverpool]
gi|325116870|emb|CBZ52423.1| dihydrouridine synthase domain-containing protein [Neospora caninum
Liverpool]
Length = 568
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 123 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
G+ + L AA+L E D +D+N GCPQ +A+RGHYGA+L + LL ++V +
Sbjct: 175 GDSPETLLAAAQLVEDEVDAVDLNFGCPQGIARRGHYGAFLLHESELLIDIVST 228
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E D +D+N GCPQ +A+RGHYGA+L + LL ++V
Sbjct: 188 VEDEVDAVDLNFGCPQGIARRGHYGAFLLHESELLIDIV 226
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHM 114
+ E D +D+N GCPQ +A+RGHYGA+L + LL ++ H+
Sbjct: 187 LVEDEVDAVDLNFGCPQGIARRGHYGAFLLHESELLIDIVSTLHKHL 233
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
+ E D D+N GCPQ +A+RGHYGA+L + LL ++
Sbjct: 187 LVEDEVDAVDLNFGCPQGIARRGHYGAFLLHESELLIDI 225
>gi|145551887|ref|XP_001461620.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124429455|emb|CAK94247.1| unnamed protein product [Paramecium tetraurelia]
Length = 360
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
CG+D + L +AA + + CD IDIN+GCPQ +A++G YGAYL + + +V
Sbjct: 79 LCGHDPQVLIKAALMIQDQCDAIDINLGCPQGIARKGLYGAYLLEKREQVLTIV 132
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYL 96
+D PL +L H + + + + + CD IDIN+GCPQ +A++G YGAYL
Sbjct: 71 EDRPLFAQLCGH------DPQVLIKAALMIQDQCDAIDINLGCPQGIARKGLYGAYL 121
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYL 38
+ CD IDIN+GCPQ +A++G YGAYL
Sbjct: 95 QDQCDAIDINLGCPQGIARKGLYGAYL 121
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 165 DDWPLLTNLV-YSPNMV--HFVIAEPHCDGNDINIGCPQMVAKRGHYGAYL 212
+D PL L + P ++ ++ + CD DIN+GCPQ +A++G YGAYL
Sbjct: 71 EDRPLFAQLCGHDPQVLIKAALMIQDQCDAIDINLGCPQGIARKGLYGAYL 121
>gi|156102342|ref|XP_001616864.1| tRNA-dihydrouridine synthase [Plasmodium vivax Sal-1]
gi|148805738|gb|EDL47137.1| tRNA-dihydrouridine synthase, putative [Plasmodium vivax]
Length = 340
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
FCGN+SK + A + + + +D+N+GCPQ +AK+G+YGA+L + NLV
Sbjct: 87 FCGNNSKIILNAIEYIKNEVNAVDLNLGCPQQIAKKGNYGAFLLQKHDEVVNLV 140
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRG 90
R Y + D P++ + + N + + + + + +D+N+GCPQ +AK+G
Sbjct: 70 RKSYFQSCEKDEPVIAQ------FCGNNSKIILNAIEYIKNEVNAVDLNLGCPQQIAKKG 123
Query: 91 HYGAYL 96
+YGA+L
Sbjct: 124 NYGAFL 129
Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 16 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+ +D+N+GCPQ +AK+G+YGA+L + LV
Sbjct: 107 NAVDLNLGCPQQIAKKGNYGAFLLQKHDEVVNLV 140
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 156 RGHYGAYLQDDWPLL-----TNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGA 210
R Y + D P++ N N + ++ E + D+N+GCPQ +AK+G+YGA
Sbjct: 70 RKSYFQSCEKDEPVIAQFCGNNSKIILNAIEYIKNE--VNAVDLNLGCPQQIAKKGNYGA 127
Query: 211 YL 212
+L
Sbjct: 128 FL 129
>gi|389585875|dbj|GAB68605.1| tRNA-dihydrouridine synthase [Plasmodium cynomolgi strain B]
Length = 340
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
FCGN SK L A + + + +D+N+GCPQ +AK+G+YGA+L + NLV
Sbjct: 87 FCGNSSKILLNAIEYIKNEVNAVDLNLGCPQQIAKKGNYGAFLLHKHDEVVNLV 140
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRG 90
R Y + D P++ + + + + + + + + +D+N+GCPQ +AK+G
Sbjct: 70 RKSYFQSCEKDEPVIAQ------FCGNSSKILLNAIEYIKNEVNAVDLNLGCPQQIAKKG 123
Query: 91 HYGAYL 96
+YGA+L
Sbjct: 124 NYGAFL 129
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 21/23 (91%)
Query: 16 DGIDINIGCPQMVAKRGHYGAYL 38
+ +D+N+GCPQ +AK+G+YGA+L
Sbjct: 107 NAVDLNLGCPQQIAKKGNYGAFL 129
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Query: 178 NMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYL 212
N + ++ E + D+N+GCPQ +AK+G+YGA+L
Sbjct: 97 NAIEYIKNE--VNAVDLNLGCPQQIAKKGNYGAFL 129
>gi|395324906|gb|EJF57338.1| FMN-linked oxidoreductase [Dichomitus squalens LYAD-421 SS1]
Length = 352
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYS 176
+ CGND + + AA+ D ID+N+GCPQ A+ GHYG YL + DWPL+ ++V +
Sbjct: 55 VQLCGNDPEVVVRAARTVVDKADAIDLNLGCPQDAAREGHYGGYLLEKKDWPLVESIVSA 114
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 15 CDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELVVHFS 53
D ID+N+GCPQ A+ GHYG YL + DWPL+ +V S
Sbjct: 76 ADAIDLNLGCPQDAAREGHYGGYLLEKKDWPLVESIVSALS 116
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
Query: 73 CDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 106
D ID+N+GCPQ A+ GHYG YL + DWPL+ +
Sbjct: 76 ADAIDLNLGCPQDAAREGHYGGYLLEKKDWPLVESI 111
Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 189 CDGNDINIGCPQMVAKRGHYGAYL--QDDWPLLTEL 222
D D+N+GCPQ A+ GHYG YL + DWPL+ +
Sbjct: 76 ADAIDLNLGCPQDAAREGHYGGYLLEKKDWPLVESI 111
>gi|389602414|ref|XP_001567212.2| putative dihydrouridine synthase (Dus) [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505439|emb|CAM42636.2| putative dihydrouridine synthase (Dus) [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 666
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 9 IETEP-----HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFM 63
+E EP CD +D+N+GCPQ +A+RGHYG++L +DW + +VH V P+ +
Sbjct: 269 LEEEPVHRLYQCDAVDLNLGCPQGIARRGHYGSFLMEDWESI-HTIVHTLHVELEVPVTV 327
Query: 64 GPLFIAEP-HCDGIDINIGC 82
P H + D + C
Sbjct: 328 KIRVFDRPGHAEAADNDHEC 347
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 30/38 (78%)
Query: 139 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
CD +D+N+GCPQ +A+RGHYG++L +DW + +V++
Sbjct: 279 QCDAVDLNLGCPQGIARRGHYGSFLMEDWESIHTIVHT 316
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 23/106 (21%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS-P 177
+ FCGND + AA+LA ++ ++ G ++ + T VY P
Sbjct: 217 VQFCGNDPDIVLRAARLA---------------VLGEQAAAGEQTAANYRVSTAPVYPVP 261
Query: 178 NMVH--FVIAEP-----HCDGNDINIGCPQMVAKRGHYGAYLQDDW 216
V+ + EP CD D+N+GCPQ +A+RGHYG++L +DW
Sbjct: 262 VRVNGSSLEEEPVHRLYQCDAVDLNLGCPQGIARRGHYGSFLMEDW 307
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 25/29 (86%)
Query: 72 HCDGIDINIGCPQMVAKRGHYGAYLQDDW 100
CD +D+N+GCPQ +A+RGHYG++L +DW
Sbjct: 279 QCDAVDLNLGCPQGIARRGHYGSFLMEDW 307
>gi|68076617|ref|XP_680228.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56501126|emb|CAH94784.1| conserved hypothetical protein [Plasmodium berghei]
Length = 338
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
FCGND + A + +G+DIN+GCPQ +AK+G+YGA+L + NL+
Sbjct: 86 FCGNDPSTILRAIDYIKDEVNGVDINLGCPQQIAKKGNYGAFLLHKHDEVVNLI 139
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 22/23 (95%)
Query: 16 DGIDINIGCPQMVAKRGHYGAYL 38
+G+DIN+GCPQ +AK+G+YGA+L
Sbjct: 106 NGVDINLGCPQQIAKKGNYGAFL 128
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 22/23 (95%)
Query: 74 DGIDINIGCPQMVAKRGHYGAYL 96
+G+DIN+GCPQ +AK+G+YGA+L
Sbjct: 106 NGVDINLGCPQQIAKKGNYGAFL 128
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 21/23 (91%)
Query: 190 DGNDINIGCPQMVAKRGHYGAYL 212
+G DIN+GCPQ +AK+G+YGA+L
Sbjct: 106 NGVDINLGCPQQIAKKGNYGAFL 128
>gi|405117787|gb|AFR92562.1| tRNA dihydrouridine synthase [Cryptococcus neoformans var. grubii
H99]
Length = 607
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 8/58 (13%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ FC ND L AAK E + GCPQ +AKRGHYG++LQD+W L+ L+ +
Sbjct: 154 VQFCANDPDILLAAAKKVE--------HSGCPQGIAKRGHYGSFLQDEWELIHKLIST 203
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 24/27 (88%)
Query: 23 GCPQMVAKRGHYGAYLQDDWPLLTELV 49
GCPQ +AKRGHYG++LQD+W L+ +L+
Sbjct: 175 GCPQGIAKRGHYGSFLQDEWELIHKLI 201
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 23/26 (88%)
Query: 81 GCPQMVAKRGHYGAYLQDDWPLLTEL 106
GCPQ +AKRGHYG++LQD+W L+ +L
Sbjct: 175 GCPQGIAKRGHYGSFLQDEWELIHKL 200
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 23/26 (88%)
Query: 197 GCPQMVAKRGHYGAYLQDDWPLLTEL 222
GCPQ +AKRGHYG++LQD+W L+ +L
Sbjct: 175 GCPQGIAKRGHYGSFLQDEWELIHKL 200
>gi|83032642|ref|XP_729128.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23486029|gb|EAA20693.1| Drosophila melanogaster CG3645 gene product [Plasmodium yoelii
yoelii]
Length = 338
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
FCGND + +A + +G+DIN+GCPQ +AK+G+YGA+L + NL+
Sbjct: 86 FCGNDPSTILKAIDYIKDDVNGVDINLGCPQQIAKKGNYGAFLLHKHDEVVNLI 139
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 22/23 (95%)
Query: 16 DGIDINIGCPQMVAKRGHYGAYL 38
+G+DIN+GCPQ +AK+G+YGA+L
Sbjct: 106 NGVDINLGCPQQIAKKGNYGAFL 128
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 22/23 (95%)
Query: 74 DGIDINIGCPQMVAKRGHYGAYL 96
+G+DIN+GCPQ +AK+G+YGA+L
Sbjct: 106 NGVDINLGCPQQIAKKGNYGAFL 128
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 21/23 (91%)
Query: 190 DGNDINIGCPQMVAKRGHYGAYL 212
+G DIN+GCPQ +AK+G+YGA+L
Sbjct: 106 NGVDINLGCPQQIAKKGNYGAFL 128
>gi|70930687|ref|XP_737208.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56512402|emb|CAH78878.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 141
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FCGND + +A + +G+DIN+GCPQ +AK+G+YGA+L + NL+
Sbjct: 84 VQFCGNDPSIILKAIDYIKDEVNGVDINLGCPQQIAKKGNYGAFLLHKHDEVVNLI 139
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRG 90
R Y D PL+ + + + + + + + +G+DIN+GCPQ +AK+G
Sbjct: 69 RTGYFKTCDQDKPLIVQ------FCGNDPSIILKAIDYIKDEVNGVDINLGCPQQIAKKG 122
Query: 91 HYGAYL 96
+YGA+L
Sbjct: 123 NYGAFL 128
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 22/23 (95%)
Query: 16 DGIDINIGCPQMVAKRGHYGAYL 38
+G+DIN+GCPQ +AK+G+YGA+L
Sbjct: 106 NGVDINLGCPQQIAKKGNYGAFL 128
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 156 RGHYGAYLQDDWPLLTNLV-YSPNMVHFVI--AEPHCDGNDINIGCPQMVAKRGHYGAYL 212
R Y D PL+ P+++ I + +G DIN+GCPQ +AK+G+YGA+L
Sbjct: 69 RTGYFKTCDQDKPLIVQFCGNDPSIILKAIDYIKDEVNGVDINLGCPQQIAKKGNYGAFL 128
>gi|221060526|ref|XP_002260908.1| tRNA-dihydrouridine synthase [Plasmodium knowlesi strain H]
gi|193810982|emb|CAQ42880.1| tRNA-dihydrouridine synthase, putative [Plasmodium knowlesi strain
H]
Length = 340
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
FCGN+SK + A + + + +D+N+GCPQ +AK+G+YGA+L + NLV
Sbjct: 87 FCGNNSKIILSAIEYIKNDVNAVDLNLGCPQQIAKKGNYGAFLLHKHDEVVNLV 140
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRG 90
R Y + D P++ + + N + + + + + +D+N+GCPQ +AK+G
Sbjct: 70 RKGYFQSCKKDEPVIAQ------FCGNNSKIILSAIEYIKNDVNAVDLNLGCPQQIAKKG 123
Query: 91 HYGAYL 96
+YGA+L
Sbjct: 124 NYGAFL 129
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 21/23 (91%)
Query: 16 DGIDINIGCPQMVAKRGHYGAYL 38
+ +D+N+GCPQ +AK+G+YGA+L
Sbjct: 107 NAVDLNLGCPQQIAKKGNYGAFL 129
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 19/20 (95%)
Query: 193 DINIGCPQMVAKRGHYGAYL 212
D+N+GCPQ +AK+G+YGA+L
Sbjct: 110 DLNLGCPQQIAKKGNYGAFL 129
>gi|392560700|gb|EIW53882.1| FMN-linked oxidoreductase [Trametes versicolor FP-101664 SS1]
Length = 360
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGI----DINIGCPQMVAKRGHYGAYLQD--DWPLLTN 172
+ CGND + + +AA+ D I D+N+GCPQ A+ G YG YL D DWPL+ +
Sbjct: 69 VQLCGNDPEIVLKAARTVVDRVDAIGAYIDLNLGCPQEAAREGQYGGYLLDKKDWPLVES 128
Query: 173 LVYS 176
+V +
Sbjct: 129 MVSA 132
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 76 IDINIGCPQMVAKRGHYGAYLQD--DWPLLTELGFKTRSHM----CGHSLMFCGNDSKNL 129
ID+N+GCPQ A+ G YG YL D DWPL+ + SH L C N S
Sbjct: 97 IDLNLGCPQEAAREGQYGGYLLDKKDWPLVESM-VSALSHSLPVPVSAKLRLCQNTSSTP 155
Query: 130 TEAAKL 135
AA+L
Sbjct: 156 ELAARL 161
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 18 IDINIGCPQMVAKRGHYGAYLQD--DWPLLTELVVHFS 53
ID+N+GCPQ A+ G YG YL D DWPL+ +V S
Sbjct: 97 IDLNLGCPQEAAREGQYGGYLLDKKDWPLVESMVSALS 134
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 193 DINIGCPQMVAKRGHYGAYLQD--DWPLLTEL 222
D+N+GCPQ A+ G YG YL D DWPL+ +
Sbjct: 98 DLNLGCPQEAAREGQYGGYLLDKKDWPLVESM 129
>gi|119610150|gb|EAW89744.1| dihydrouridine synthase 1-like (S. cerevisiae), isoform CRA_b [Homo
sapiens]
Length = 378
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 29/38 (76%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKR 156
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKR
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKR 115
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
K Y +D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKR
Sbjct: 62 KENLYCEVCPEDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKR 115
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 155 KRGHYGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKR 205
K Y +D PL+ + V ++A+ +CD D+N+GCPQM+AKR
Sbjct: 62 KENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKR 115
Score = 37.4 bits (85), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 17/18 (94%)
Query: 14 HCDGIDINIGCPQMVAKR 31
+CD ID+N+GCPQM+AKR
Sbjct: 98 YCDAIDLNLGCPQMIAKR 115
>gi|391341466|ref|XP_003745051.1| PREDICTED: uncharacterized protein LOC100898428 [Metaseiulus
occidentalis]
Length = 596
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 85 MVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGID 144
++A+R L+ + + + G TR + G ++ F N + AA+ E CD +D
Sbjct: 68 ILARRDLQEVLLEAQFFVANQAG--TRKSIEGPNVAFRANIPETFDAAARPVEDECDAVD 125
Query: 145 INIGCPQMVAKRGHYGAYLQDDWPLLTNL 173
+ +G P+ VA+ +YGA+LQ +W L+ +
Sbjct: 126 LYVGFPKSVAETANYGAFLQHEWQLIAKI 154
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 48
E CD +D+ +G P+ VA+ +YGA+LQ +W L+ ++
Sbjct: 117 VEDECDAVDLYVGFPKSVAETANYGAFLQHEWQLIAKI 154
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
E CD +D+ +G P+ VA+ +YGA+LQ +W L+ ++
Sbjct: 118 EDECDAVDLYVGFPKSVAETANYGAFLQHEWQLIAKI 154
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMA 226
E CD D+ +G P+ VA+ +YGA+LQ +W L+ ++ A
Sbjct: 118 EDECDAVDLYVGFPKSVAETANYGAFLQHEWQLIAKIFSEA 158
>gi|300120824|emb|CBK21066.2| unnamed protein product [Blastocystis hominis]
Length = 225
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 173
+ CGND + L +AA E C +D+N+GCPQ +A++G YG+YL ++ L+ +
Sbjct: 29 VQLCGNDPEFLQKAALKFEGKCMAVDLNLGCPQGIARKGKYGSYLLPNYNLVEQI 83
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Query: 41 DWPLLTELVVHFSWVSKNGPLFMGPLFIA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
D PL+ +L N P F+ + E C +D+N+GCPQ +A++G YG+YL +
Sbjct: 24 DSPLIVQL-------CGNDPEFLQKAALKFEGKCMAVDLNLGCPQGIARKGKYGSYLLPN 76
Query: 100 WPLLTELG 107
+ L+ ++
Sbjct: 77 YNLVEQIA 84
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 29/40 (72%)
Query: 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 48
++ E C +D+N+GCPQ +A++G YG+YL ++ L+ ++
Sbjct: 44 LKFEGKCMAVDLNLGCPQGIARKGKYGSYLLPNYNLVEQI 83
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224
E C D+N+GCPQ +A++G YG+YL ++ L+ ++ K
Sbjct: 47 EGKCMAVDLNLGCPQGIARKGKYGSYLLPNYNLVEQIAK 85
>gi|358055549|dbj|GAA98669.1| hypothetical protein E5Q_05357 [Mixia osmundae IAM 14324]
Length = 542
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 5/91 (5%)
Query: 121 FCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS-- 176
FC +D + L +AA + D +D+N+GCPQ +AKRG YGA+L ++ L+ +L+ +
Sbjct: 92 FCAHDPEVLLKAASILADKGLVDAVDLNLGCPQGIAKRGRYGAFLMEEPELIESLISALH 151
Query: 177 PNMVHFVIAEPHC-DGNDINIGCPQMVAKRG 206
+ V A+ C D + + +M+ + G
Sbjct: 152 KRLSVPVTAKFRCFDTTERTVEYARMLERAG 182
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 41 DWPLLTELVVHFSWVSKNGPLFMGPLFIAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDD 99
D PL+ + H V L +A+ D +D+N+GCPQ +AKRG YGA+L ++
Sbjct: 85 DRPLIAQFCAHDPEV-----LLKAASILADKGLVDAVDLNLGCPQGIAKRGRYGAFLMEE 139
Query: 100 WPLLTEL--GFKTRSHMCGHSLMFCGNDSKNLTEAAKLAE 137
L+ L R + + C + ++ E A++ E
Sbjct: 140 PELIESLISALHKRLSVPVTAKFRCFDTTERTVEYARMLE 179
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 16 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
D +D+N+GCPQ +AKRG YGA+L ++ L+ L+
Sbjct: 114 DAVDLNLGCPQGIAKRGRYGAFLMEEPELIESLI 147
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 190 DGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
D D+N+GCPQ +AKRG YGA+L ++ L+ L
Sbjct: 114 DAVDLNLGCPQGIAKRGRYGAFLMEEPELIESL 146
>gi|403172809|ref|XP_003331954.2| hypothetical protein PGTG_13906 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375170007|gb|EFP87535.2| hypothetical protein PGTG_13906 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1600
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 16/72 (22%)
Query: 119 LMFCGNDSKNLTEAAKLAEPH----------------CDGIDINIGCPQMVAKRGHYGAY 162
+ FC N L +AA L H D +D+N+GCPQ +AK+G YGA+
Sbjct: 153 VQFCANHPDTLLKAANLVINHPSSSSDFLAGNMDRLPVDAVDLNLGCPQGIAKKGKYGAF 212
Query: 163 LQDDWPLLTNLV 174
L D L+T L+
Sbjct: 213 LMDHPDLITQLI 224
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
Query: 4 GGRDRIETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
G DR+ D +D+N+GCPQ +AK+G YGA+L D L+T+L+
Sbjct: 183 GNMDRLPV----DAVDLNLGCPQGIAKKGKYGAFLMDHPDLITQLI 224
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 74 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHM 114
D +D+N+GCPQ +AK+G YGA+L D L+T+L + H+
Sbjct: 191 DAVDLNLGCPQGIAKKGKYGAFLMDHPDLITQLISQLDQHL 231
Score = 45.4 bits (106), Expect = 0.020, Method: Composition-based stats.
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 190 DGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
D D+N+GCPQ +AK+G YGA+L D L+T+L
Sbjct: 191 DAVDLNLGCPQGIAKKGKYGAFLMDHPDLITQL 223
>gi|145545963|ref|XP_001458665.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426486|emb|CAK91268.1| unnamed protein product [Paramecium tetraurelia]
Length = 358
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
CG+D + + +AA + + CD ID+N GCPQ +A++G YGA+L + + +V
Sbjct: 79 LCGHDPQVIIKAALMIQDQCDAIDLNFGCPQGIARKGLYGAFLLEKREQVLTIV 132
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYL 96
+D PL +L H + + + + + CD ID+N GCPQ +A++G YGA+L
Sbjct: 71 EDRPLFAQLCGH------DPQVIIKAALMIQDQCDAIDLNFGCPQGIARKGLYGAFL 121
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYL 38
+ CD ID+N GCPQ +A++G YGA+L
Sbjct: 95 QDQCDAIDLNFGCPQGIARKGLYGAFL 121
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 24/113 (21%)
Query: 104 TELGFKTRSHMCGHSLMFCGN-DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAY 162
+EL F+ ++ G +L + S+ +TE+ + + CP
Sbjct: 29 SELAFRMQTRKYGTTLAYTPMLHSRIMTESKSYKD------EFFTTCP------------ 70
Query: 163 LQDDWPLLTNLV-YSPNMV--HFVIAEPHCDGNDINIGCPQMVAKRGHYGAYL 212
+D PL L + P ++ ++ + CD D+N GCPQ +A++G YGA+L
Sbjct: 71 --EDRPLFAQLCGHDPQVIIKAALMIQDQCDAIDLNFGCPQGIARKGLYGAFL 121
>gi|326436672|gb|EGD82242.1| dihydrouridine synthase [Salpingoeca sp. ATCC 50818]
Length = 434
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 31/45 (68%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 165
C ++ + +AA+L EP+ D +D+N+GCPQ A+ G +GA+L +
Sbjct: 95 LCATNADDFVQAAQLVEPYVDAVDLNLGCPQRTAQAGGFGAFLME 139
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 6/57 (10%)
Query: 42 WPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
+PLL +L + N F+ + EP+ D +D+N+GCPQ A+ G +GA+L +
Sbjct: 89 YPLLGQLC------ATNADDFVQAAQLVEPYVDAVDLNLGCPQRTAQAGGFGAFLME 139
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQD 40
EP+ D +D+N+GCPQ A+ G +GA+L +
Sbjct: 111 EPYVDAVDLNLGCPQRTAQAGGFGAFLME 139
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 167 WPLLTNLVYSPNMVHFV----IAEPHCDGNDINIGCPQMVAKRGHYGAYLQD 214
+PLL L + N FV + EP+ D D+N+GCPQ A+ G +GA+L +
Sbjct: 89 YPLLGQLC-ATNADDFVQAAQLVEPYVDAVDLNLGCPQRTAQAGGFGAFLME 139
>gi|296209951|ref|XP_002751783.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Callithrix jacchus]
Length = 317
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNRGDCPLIVQFAANDARVLSDAARIVSPYANGIDINCGCPQRWAMAEGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVRDMV 141
>gi|291391307|ref|XP_002712160.1| PREDICTED: dihydrouridine synthase 4-like [Oryctolagus cuniculus]
Length = 317
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L+EAA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSEAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVRDMV 141
>gi|403257051|ref|XP_003921151.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Saimiri boliviensis boliviensis]
Length = 307
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 65 FTTNQGDCPLIVQFAANDARLLSDAARIVSPYANGIDINCGCPQRWAMAEGYGACLINKP 124
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 125 ELVRDMV 131
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELG 107
L+V F+ + + L I P+ +GIDIN GCPQ A YGA L + L+ ++
Sbjct: 74 LIVQFA--ANDARLLSDAARIVSPYANGIDINCGCPQRWAMAEGYGACLINKPELVRDMV 131
Query: 108 FKTRSHM 114
+ R+ +
Sbjct: 132 TQVRNQV 138
>gi|290982753|ref|XP_002674094.1| predicted protein [Naegleria gruberi]
gi|284087682|gb|EFC41350.1| predicted protein [Naegleria gruberi]
Length = 450
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 7/71 (9%)
Query: 121 FCGNDSKNLTEAAK----LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
FC ND + + K L++ ID+N+GCPQ +A+RG YG++L +D + +++
Sbjct: 165 FCTNDPETFVQCGKRVWDLSKQKISAIDLNLGCPQRIARRGRYGSFLMEDLQTVHSII-- 222
Query: 177 PNMVHFVIAEP 187
N H + P
Sbjct: 223 -NKAHLELPMP 232
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
+++ ID+N+GCPQ +A+RG YG++L +D
Sbjct: 183 LSKQKISAIDLNLGCPQRIARRGRYGSFLMED 214
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
++ ID+N+GCPQ +A+RG YG++L +D + ++
Sbjct: 184 SKQKISAIDLNLGCPQRIARRGRYGSFLMEDLQTVHSII 222
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 20/23 (86%)
Query: 193 DINIGCPQMVAKRGHYGAYLQDD 215
D+N+GCPQ +A+RG YG++L +D
Sbjct: 192 DLNLGCPQRIARRGRYGSFLMED 214
>gi|443920898|gb|ELU40722.1| LAP1 protein [Rhizoctonia solani AG-1 IA]
Length = 1500
Score = 50.1 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 96 LQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAK 155
LQ W T G +TR F ND K +A +L PH DG+D+N GCPQ A
Sbjct: 654 LQRPW-FGTLSGGRTRHVRGSLVAQFAANDPKAFADACELIHPHVDGVDLNCGCPQPWAY 712
Query: 156 RGHYGAYL 163
H G++L
Sbjct: 713 SEHVGSWL 720
Score = 37.7 bits (86), Expect = 3.9, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYL 96
+ PH DG+D+N GCPQ A H G++L
Sbjct: 692 LIHPHVDGVDLNCGCPQPWAYSEHVGSWL 720
Score = 37.7 bits (86), Expect = 4.0, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYL 38
PH DG+D+N GCPQ A H G++L
Sbjct: 695 PHVDGVDLNCGCPQPWAYSEHVGSWL 720
>gi|71032309|ref|XP_765796.1| hypothetical protein [Theileria parva strain Muguga]
gi|68352753|gb|EAN33513.1| hypothetical protein, conserved [Theileria parva]
Length = 327
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
FCGND A+ + IDIN+GCPQ +A++G YG++L + L+ +V S
Sbjct: 87 FCGNDPNAFILASSYIKNDVSAIDINLGCPQGIARKGRYGSFLLEYPQLINEIVRS 142
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 164 QDDWPLLTNLV-YSPNMVHFVIAEPHCDGN----DINIGCPQMVAKRGHYGAYLQDDWPL 218
DD PL+ PN F++A + + DIN+GCPQ +A++G YG++L + L
Sbjct: 78 SDDKPLIAQFCGNDPNA--FILASSYIKNDVSAIDINLGCPQGIARKGRYGSFLLEYPQL 135
Query: 219 LTELGKMAMLVGI 231
+ E+ + GI
Sbjct: 136 INEIVRSLTQTGI 148
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 17 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
IDIN+GCPQ +A++G YG++L + L+ E+V
Sbjct: 108 AIDINLGCPQGIARKGRYGSFLLEYPQLINEIV 140
Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 50 VHFSWVSKNGPLFM-------GPLFIAEPH----CDGIDINIGCPQMVAKRGHYGAYLQD 98
+HF S + PL +A + IDIN+GCPQ +A++G YG++L +
Sbjct: 72 IHFHTSSDDKPLIAQFCGNDPNAFILASSYIKNDVSAIDINLGCPQGIARKGRYGSFLLE 131
Query: 99 DWPLLTEL 106
L+ E+
Sbjct: 132 YPQLINEI 139
>gi|290991278|ref|XP_002678262.1| predicted protein [Naegleria gruberi]
gi|284091874|gb|EFC45518.1| predicted protein [Naegleria gruberi]
Length = 292
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 121 FCGNDSKNLTE----AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
FC ND E A +L+ +D+N+GCPQ +AK+G YG+YL +D L+ +++
Sbjct: 73 FCANDPNIFVECGWLAWELSNQKIAAVDLNLGCPQRIAKKGRYGSYLMEDIDLICSMI 130
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 19/97 (19%)
Query: 33 HYGAYLQDDWPLLTELVVHFSWVSKNGPLFMG------PLFI---------AEPHCDGID 77
H ++QD+ T HF ++ GP+F +F+ + +D
Sbjct: 45 HGRIFVQDE----TYQKTHFQFLESEGPVFAQFCANDPNIFVECGWLAWELSNQKIAAVD 100
Query: 78 INIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHM 114
+N+GCPQ +AK+G YG+YL +D L+ + K +
Sbjct: 101 LNLGCPQRIAKKGRYGSYLMEDIDLICSMIEKAHKEL 137
Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 25/33 (75%)
Query: 17 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+D+N+GCPQ +AK+G YG+YL +D L+ ++
Sbjct: 98 AVDLNLGCPQRIAKKGRYGSYLMEDIDLICSMI 130
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 193 DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMA 226
D+N+GCPQ +AK+G YG+YL +D L+ + + A
Sbjct: 100 DLNLGCPQRIAKKGRYGSYLMEDIDLICSMIEKA 133
>gi|323451531|gb|EGB07408.1| hypothetical protein AURANDRAFT_71832 [Aureococcus anophagefferens]
Length = 557
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 121 FCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYS 176
FCGND + A LA D +D+N+GCPQ VA GHYG+YL ++D L+ ++V +
Sbjct: 186 FCGNDPGVVGRACALAAATGGVDAVDLNLGCPQRVAFAGHYGSYLMREEDRDLVKSIVAA 245
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 15/78 (19%)
Query: 37 YLQ---DDWPLLTELVVHFSWVSKNGPLFMG---PLFIAEPHCDGIDINIGCPQMVAKRG 90
YLQ +D PL V HF N P +G L A D +D+N+GCPQ VA G
Sbjct: 172 YLQTHAEDRPL----VAHFCG---NDPGVVGRACALAAATGGVDAVDLNLGCPQRVAFAG 224
Query: 91 HYGAYL--QDDWPLLTEL 106
HYG+YL ++D L+ +
Sbjct: 225 HYGSYLMREEDRDLVKSI 242
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 16 DGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELVV 50
D +D+N+GCPQ VA GHYG+YL ++D L+ +V
Sbjct: 208 DAVDLNLGCPQRVAFAGHYGSYLMREEDRDLVKSIVA 244
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 162 YLQ---DDWPLLTNLV-YSPNMV----HFVIAEPHCDGNDINIGCPQMVAKRGHYGAYL- 212
YLQ +D PL+ + P +V A D D+N+GCPQ VA GHYG+YL
Sbjct: 172 YLQTHAEDRPLVAHFCGNDPGVVGRACALAAATGGVDAVDLNLGCPQRVAFAGHYGSYLM 231
Query: 213 -QDDWPLLTEL 222
++D L+ +
Sbjct: 232 REEDRDLVKSI 242
>gi|4097493|gb|AAD00100.1| PP35 [Homo sapiens]
Length = 307
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 65 FTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKP 124
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 125 ELVQDMV 131
>gi|403220648|dbj|BAM38781.1| uncharacterized protein TOT_010001229 [Theileria orientalis strain
Shintoku]
Length = 381
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 121 FC-GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
FC GND K A+ + IDIN+GCPQ +A++G YG++L D+P L N +
Sbjct: 87 FCAGNDPKTFVLASSFIKDDVSAIDINLGCPQGIARKGKYGSFLL-DYPDLINEI 140
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 165 DDWPLLTNLVYSPNMVHFVIAEPHCDGN----DINIGCPQMVAKRGHYGAYLQDDWPLLT 220
DD PL+ + FV+A + DIN+GCPQ +A++G YG++L D L+
Sbjct: 79 DDKPLIAQFCAGNDPKTFVLASSFIKDDVSAIDINLGCPQGIARKGKYGSFLLDYPDLIN 138
Query: 221 ELGKMAMLVGI 231
E+ + G+
Sbjct: 139 EIVRRLTESGV 149
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 40 DDWPLLTELVVHFSWVSKNGP--LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 97
DD PL+ + + + N P + FI + IDIN+GCPQ +A++G YG++L
Sbjct: 79 DDKPLIAQ------FCAGNDPKTFVLASSFIKDD-VSAIDINLGCPQGIARKGKYGSFLL 131
Query: 98 DDWPLLTEL 106
D L+ E+
Sbjct: 132 DYPDLINEI 140
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 17 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
IDIN+GCPQ +A++G YG++L D L+ E+V
Sbjct: 109 AIDINLGCPQGIARKGKYGSFLLDYPDLINEIV 141
>gi|84999472|ref|XP_954457.1| hypothetical protein [Theileria annulata]
gi|65305455|emb|CAI73780.1| hypothetical protein, conserved [Theileria annulata]
Length = 359
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT 171
FCGND A+ + IDIN+GCPQ +AK+G YG++L + L+T
Sbjct: 87 FCGNDPSAFILASSYIKNDVSAIDINLGCPQGIAKKGRYGSFLLEYPQLIT 137
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 50 VHFSWVSKNGPLFM-------GPLFIAEPH----CDGIDINIGCPQMVAKRGHYGAYLQD 98
+HF S + PL +A + IDIN+GCPQ +AK+G YG++L
Sbjct: 72 IHFHTSSDDKPLIAQFCGNDPSAFILASSYIKNDVSAIDINLGCPQGIAKKGRYGSFLL- 130
Query: 99 DWPLLTELGFKT 110
++P L GF +
Sbjct: 131 EYPQLITKGFAS 142
Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 17 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTE 47
IDIN+GCPQ +AK+G YG++L + L+T+
Sbjct: 108 AIDINLGCPQGIAKKGRYGSFLLEYPQLITK 138
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 164 QDDWPLLTNLVYSPNMVHFVIAEPHCDGN----DINIGCPQMVAKRGHYGAYLQDDWPLL 219
DD PL+ + F++A + + DIN+GCPQ +AK+G YG++L ++P L
Sbjct: 78 SDDKPLIAQFC-GNDPSAFILASSYIKNDVSAIDINLGCPQGIAKKGRYGSFLL-EYPQL 135
Query: 220 TELGKMAMLVGILDNTGSW 238
G ++ + T W
Sbjct: 136 ITKGFASVDTKFMLFTRGW 154
>gi|73981937|ref|XP_540383.2| PREDICTED: tRNA-dihydrouridine synthase 4-like [Canis lupus
familiaris]
Length = 317
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVRDMV 141
>gi|380799123|gb|AFE71437.1| tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like, partial
[Macaca mulatta]
Length = 299
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 57 FTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKP 116
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 117 ELVRDMV 123
>gi|402864531|ref|XP_003896514.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Papio anubis]
Length = 317
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVRDMV 141
>gi|351712773|gb|EHB15692.1| tRNA-dihydrouridine synthase 4-like protein [Heterocephalus glaber]
Length = 317
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARILSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVQDMV 141
>gi|31742496|ref|NP_853559.1| tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like [Homo sapiens]
gi|394025765|ref|NP_001257348.1| tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like [Homo sapiens]
gi|114615410|ref|XP_001164272.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
isoform 5 [Pan troglodytes]
gi|332868275|ref|XP_519306.3| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
isoform 6 [Pan troglodytes]
gi|397479923|ref|XP_003811250.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
isoform 1 [Pan paniscus]
gi|397479925|ref|XP_003811251.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
isoform 2 [Pan paniscus]
gi|110808215|sp|O95620.2|DUS4L_HUMAN RecName: Full=tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like;
AltName: Full=pp35; AltName: Full=tRNA-dihydrouridine
synthase 4-like
gi|51095148|gb|EAL24391.1| protein similar to E.coli yhdg and R. capsulatus nifR3 [Homo
sapiens]
gi|119603807|gb|EAW83401.1| dihydrouridine synthase 4-like (S. cerevisiae), isoform CRA_c [Homo
sapiens]
gi|119603808|gb|EAW83402.1| dihydrouridine synthase 4-like (S. cerevisiae), isoform CRA_c [Homo
sapiens]
gi|119603810|gb|EAW83404.1| dihydrouridine synthase 4-like (S. cerevisiae), isoform CRA_c [Homo
sapiens]
gi|410221688|gb|JAA08063.1| dihydrouridine synthase 4-like [Pan troglodytes]
gi|410257808|gb|JAA16871.1| dihydrouridine synthase 4-like [Pan troglodytes]
gi|410297188|gb|JAA27194.1| dihydrouridine synthase 4-like [Pan troglodytes]
gi|410339643|gb|JAA38768.1| dihydrouridine synthase 4-like [Pan troglodytes]
Length = 317
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVQDMV 141
>gi|388453742|ref|NP_001253555.1| dihydrouridine synthase 4-like [Macaca mulatta]
gi|355560906|gb|EHH17592.1| hypothetical protein EGK_14030 [Macaca mulatta]
gi|355747923|gb|EHH52420.1| hypothetical protein EGM_12857 [Macaca fascicularis]
gi|383410657|gb|AFH28542.1| tRNA-dihydrouridine synthase 4-like [Macaca mulatta]
Length = 317
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVRDMV 141
>gi|426357501|ref|XP_004046076.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
isoform 1 [Gorilla gorilla gorilla]
gi|426357503|ref|XP_004046077.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
isoform 2 [Gorilla gorilla gorilla]
Length = 317
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVQDMV 141
>gi|344270847|ref|XP_003407253.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Loxodonta africana]
Length = 317
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVQDMV 141
>gi|332237993|ref|XP_003268188.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
isoform 1 [Nomascus leucogenys]
Length = 317
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVRDMV 141
>gi|301755675|ref|XP_002913683.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Ailuropoda
melanoleuca]
gi|281349138|gb|EFB24722.1| hypothetical protein PANDA_001508 [Ailuropoda melanoleuca]
Length = 317
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVRDMV 141
>gi|348568111|ref|XP_003469842.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Cavia porcellus]
Length = 317
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVRDMV 141
>gi|395539169|ref|XP_003771545.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Sarcophilus harrisii]
Length = 317
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNKGDCPLIVQFAANDAQLLSDAARIVYPYANGIDINCGCPQRWAITEGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVRDMV 141
>gi|354498109|ref|XP_003511158.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Cricetulus griseus]
Length = 317
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARILSDAAQIVCPYANGIDINCGCPQRWAMAEGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVQDMV 141
>gi|344257920|gb|EGW14024.1| tRNA-dihydrouridine synthase 4-like [Cricetulus griseus]
Length = 299
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 57 FTTNQGDCPLIVQFAANDARILSDAAQIVCPYANGIDINCGCPQRWAMAEGYGACLINKP 116
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 117 ELVQDMV 123
>gi|350588960|ref|XP_003357562.2| PREDICTED: tRNA-dihydrouridine synthase 4-like, partial [Sus
scrofa]
Length = 298
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 52 FTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWALAEGYGACLINKP 111
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 112 ELVKDMV 118
>gi|149704573|ref|XP_001491222.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Equus caballus]
gi|335772672|gb|AEH58139.1| tRNA-dihydrouridine synthase 4-like-like protein [Equus caballus]
Length = 317
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVQDMV 141
>gi|440901315|gb|ELR52288.1| tRNA-dihydrouridine synthase 4-like protein, partial [Bos grunniens
mutus]
Length = 323
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 80 FTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWALAEGYGACLINKP 139
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 140 ELVRDMV 146
>gi|426227585|ref|XP_004007898.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Ovis aries]
Length = 238
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWALAEGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVRDMV 141
>gi|156120523|ref|NP_001095407.1| tRNA-dihydrouridine synthase 4-like [Bos taurus]
gi|151555764|gb|AAI49230.1| DUS4L protein [Bos taurus]
gi|296488502|tpg|DAA30615.1| TPA: dihydrouridine synthase 4-like [Bos taurus]
Length = 238
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWALAEGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVRDMV 141
>gi|395818443|ref|XP_003782638.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Otolemur garnettii]
Length = 317
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND+ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDASLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVQDMV 141
>gi|126340537|ref|XP_001363271.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Monodelphis
domestica]
Length = 317
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNKGDCPLIVQFAANDAQLLSDAARIVCPYANGIDINCGCPQRWAITEGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVQDMV 141
>gi|410952046|ref|XP_003982699.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Felis catus]
Length = 317
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKP 134
Query: 168 PLLTNLV 174
++ ++V
Sbjct: 135 EVVRDMV 141
>gi|346320912|gb|EGX90512.1| dihydrouridine synthase 4-like protein [Cordyceps militaris CM01]
Length = 381
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 83 PQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDG 142
P ++AK + ++ +D ++L T L F ND+ L A+ LA PH G
Sbjct: 57 PMILAKEFNRSSFARD-----SDLTIGTDGPQPVTILQFGANDATELARASSLAAPHVSG 111
Query: 143 IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+D+N GCPQ A GA L + L+ ++V +
Sbjct: 112 VDLNCGCPQGWACAETLGAALMNRRELVRDMVVA 145
>gi|148704961|gb|EDL36908.1| dihydrouridine synthase 4-like (S. cerevisiae), isoform CRA_a [Mus
musculus]
Length = 327
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA L P+ +GIDIN GCPQ A YGA L +
Sbjct: 78 FTTNQGDCPLIVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINKP 137
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 138 ELVHDMV 144
>gi|21312100|ref|NP_082278.1| tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like [Mus musculus]
gi|12845370|dbj|BAB26724.1| unnamed protein product [Mus musculus]
Length = 324
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA L P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVHDMV 141
>gi|148704962|gb|EDL36909.1| dihydrouridine synthase 4-like (S. cerevisiae), isoform CRA_b [Mus
musculus]
Length = 324
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA L P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVHDMV 141
>gi|110808216|sp|Q32M08.1|DUS4L_MOUSE RecName: Full=tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like;
AltName: Full=tRNA-dihydrouridine synthase 4-like
gi|80478497|gb|AAI09352.1| Dihydrouridine synthase 4-like (S. cerevisiae) [Mus musculus]
Length = 324
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA L P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVHDMV 141
>gi|82753060|ref|XP_727524.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23483411|gb|EAA19089.1| Uncharacterized protein family UPF0034, putative [Plasmodium yoelii
yoelii]
Length = 531
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%), Gaps = 8/74 (10%)
Query: 106 LGFKTRSH--MCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQM-VAKRGHYGA 161
LGF H +C G+D +L+EAA L E D I+IN+GCP VA +G +GA
Sbjct: 201 LGFNKNEHPIVC----QLGGSDPTSLSEAAILVEQAGYDEININVGCPSTKVANKGAFGA 256
Query: 162 YLQDDWPLLTNLVY 175
YL + L+ N+VY
Sbjct: 257 YLMKNPQLVKNIVY 270
>gi|328851782|gb|EGG00933.1| hypothetical protein MELLADRAFT_39468 [Melampsora larici-populina
98AG31]
Length = 224
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 123 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 163
GND + + AK EP CDGID+N+GCPQ A + YGA L
Sbjct: 72 GNDVERVLRTAKCFEPWCDGIDLNMGCPQTHALQNGYGASL 112
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYL 38
EP CDGID+N+GCPQ A + YGA L
Sbjct: 86 EPWCDGIDLNMGCPQTHALQNGYGASL 112
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 20/27 (74%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYL 96
EP CDGID+N+GCPQ A + YGA L
Sbjct: 86 EPWCDGIDLNMGCPQTHALQNGYGASL 112
>gi|156400870|ref|XP_001639015.1| predicted protein [Nematostella vectensis]
gi|156226140|gb|EDO46952.1| predicted protein [Nematostella vectensis]
Length = 317
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F N +K+L +A ++ P DG+D+N GCPQ A + YGA+L + L+ ++V
Sbjct: 87 VQFAANCAKDLADATEIISPFVDGVDLNCGCPQRWAIQERYGAHLINQPELVKDMV 142
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCG 116
I P DG+D+N GCPQ A + YGA+L + L+ ++ +T+S + G
Sbjct: 103 IISPFVDGVDLNCGCPQRWAIQERYGAHLINQPELVKDMVRQTKSRVTG 151
Score = 36.6 bits (83), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P DG+D+N GCPQ A + YGA+L + L+ ++V
Sbjct: 106 PFVDGVDLNCGCPQRWAIQERYGAHLINQPELVKDMV 142
>gi|363900435|ref|ZP_09326940.1| hypothetical protein HMPREF9625_01600 [Oribacterium sp. ACB1]
gi|395209173|ref|ZP_10398338.1| TIM-barrel protein, nifR3 family [Oribacterium sp. ACB8]
gi|361956309|gb|EHL09627.1| hypothetical protein HMPREF9625_01600 [Oribacterium sp. ACB1]
gi|394705774|gb|EJF13300.1| TIM-barrel protein, nifR3 family [Oribacterium sp. ACB8]
Length = 373
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 73 CDGIDINIGCPQMV-AKRGHYGAYLQDDWPLLT---ELGFKTRSHMCGHSLMFCGNDSKN 128
C + +++ C +MV AK YG D LL E GF+ ++ G+D +
Sbjct: 87 CKEMGVSLSCTEMVSAKAILYGNKNTDS--LLEKGEEPGFR--------AVQLFGSDPEI 136
Query: 129 LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ E AK EP D IDIN+GCP R G+ L ++ PL+ ++ +
Sbjct: 137 MAEMAKRVEPDFDIIDINMGCPVPKVVRNQEGSALMENLPLVEKILSA 184
>gi|395738851|ref|XP_003777160.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine(20a/20b)
synthase [NAD(P)+]-like [Pongo abelii]
Length = 325
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 163
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACL 130
>gi|307166837|gb|EFN60767.1| tRNA-dihydrouridine synthase 4-like [Camponotus floridanus]
Length = 748
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 26 QMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQM 85
+ A+ + + +D+ L+V F+ + N F+G + P+C+G+D+N GCPQ
Sbjct: 54 SLKARENEFTTHKEDN-----PLIVQFAAKTVND--FVGAAEMVAPYCNGVDLNCGCPQR 106
Query: 86 VAKRGHYGAYLQDDWPLLTELGFKTRSHM 114
A + YGA L L+ +L ++ R+H+
Sbjct: 107 WAIKEGYGADLLKKPELVKDLIYEIRNHI 135
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 15/79 (18%)
Query: 97 QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKR 156
++D PL+ + KT + G AA++ P+C+G+D+N GCPQ A +
Sbjct: 66 KEDNPLIVQFAAKTVNDFVG---------------AAEMVAPYCNGVDLNCGCPQRWAIK 110
Query: 157 GHYGAYLQDDWPLLTNLVY 175
YGA L L+ +L+Y
Sbjct: 111 EGYGADLLKKPELVKDLIY 129
>gi|70929895|ref|XP_736939.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56511905|emb|CAH87272.1| hypothetical protein PC302401.00.0 [Plasmodium chabaudi chabaudi]
Length = 265
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 106 LGFKTRSH--MCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQM-VAKRGHYGA 161
LGF H +C G+D +L+EAA L E D I+IN+GCP VA +G +GA
Sbjct: 111 LGFNKNEHPIVC----QLGGSDPTSLSEAAVLIEQAGYDEININVGCPSTKVANKGAFGA 166
Query: 162 YLQDDWPLLTNLVY 175
YL L+ N+VY
Sbjct: 167 YLMKKPELVKNIVY 180
>gi|219123999|ref|XP_002182301.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|219128682|ref|XP_002184536.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403986|gb|EEC43935.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406262|gb|EEC46202.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 229
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQD--DWPLLTELVVHFSWVSKNGPLFMGPLFIA 69
+P CD ID+N+GCPQ A GH+G+YL D D L+ ++ V P+F+
Sbjct: 75 QPFCDAIDLNLGCPQRTAYLGHFGSYLLDRKDRSLICDI------VRAGAAAVSIPIFVK 128
Query: 70 EPHCDGIDINIGCPQMVAKRG 90
D ++ I Q + + G
Sbjct: 129 IRLLDKVEETIELCQQLERAG 149
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 137 EPHCDGIDINIGCPQMVAKRGHYGAYLQD--DWPLLTNLVYS 176
+P CD ID+N+GCPQ A GH+G+YL D D L+ ++V +
Sbjct: 75 QPFCDAIDLNLGCPQRTAYLGHFGSYLLDRKDRSLICDIVRA 116
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 9/46 (19%)
Query: 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMC 115
+P CD ID+N+GCPQ A GH+G+YL D K RS +C
Sbjct: 75 QPFCDAIDLNLGCPQRTAYLGHFGSYLLDR---------KDRSLIC 111
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQD 214
+P CD D+N+GCPQ A GH+G+YL D
Sbjct: 75 QPFCDAIDLNLGCPQRTAYLGHFGSYLLD 103
>gi|209447024|ref|NP_001129275.1| tRNA-dihydrouridine synthase 4-like [Rattus norvegicus]
gi|149051085|gb|EDM03258.1| dihydrouridine synthase 4-like (S. cerevisiae) (predicted) [Rattus
norvegicus]
Length = 321
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA + P+ GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSDAALIVCPYASGIDINCGCPQRWAMADGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVLDMV 141
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELG 107
L+V F+ + + L I P+ GIDIN GCPQ A YGA L + L+ ++
Sbjct: 84 LIVQFA--ANDARLLSDAALIVCPYASGIDINCGCPQRWAMADGYGACLINKPELVLDMV 141
Query: 108 FKTRSHM 114
+ R+ +
Sbjct: 142 RQVRNRV 148
>gi|328713887|ref|XP_001951826.2| PREDICTED: tRNA-dihydrouridine synthase 4-like [Acyrthosiphon
pisum]
Length = 350
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 15/86 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIG 148
R H DD PL+ + G N+S + A+ L P+CDG+D+N G
Sbjct: 61 RAHEFQTDTDDRPLIVQFG---------------ANNSSDFVNASNLIIPYCDGVDLNCG 105
Query: 149 CPQMVAKRGHYGAYLQDDWPLLTNLV 174
CPQ A YGA L + ++ + V
Sbjct: 106 CPQRWALNEGYGAQLLKNPEIIKDCV 131
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 18/124 (14%)
Query: 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRG 90
R H DD PL+ + + + N F+ + P+CDG+D+N GCPQ A
Sbjct: 61 RAHEFQTDTDDRPLIVQ------FGANNSSDFVNASNLIIPYCDGVDLNCGCPQRWALNE 114
Query: 91 HYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCP 150
YGA L + ++ + + R+H+ + K ++ +L + H +D+ C
Sbjct: 115 GYGAQLLKNPEIIKDCVRQLRNHLPTN---------KTISVKLRLLDDHRKSVDL---CQ 162
Query: 151 QMVA 154
Q+ A
Sbjct: 163 QIEA 166
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 62/150 (41%), Gaps = 18/150 (12%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPH 72
P+CDG+D+N GCPQ A YGA L + ++ + V L + + H
Sbjct: 95 PYCDGVDLNCGCPQRWALNEGYGAQLLKNPEIIKDCVRQLRNHLPTNKTISVKLRLLDDH 154
Query: 73 CDGIDINIGCPQMVAK-----RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSK 127
+D+ C Q+ A H LQ + P+ E K + ++ G D K
Sbjct: 155 RKSVDL---CQQIEATGVSFITVHGRTALQKNEPIDQEC-LKLINESVSVPVILNG-DIK 209
Query: 128 NLTEAAKLAEPHCDGIDINIGCPQMVAKRG 157
NL++A + E GC M++ RG
Sbjct: 210 NLSDAITMQE--------YTGCRGMMSARG 231
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 156 RGHYGAYLQDDWPLLTNLVYSPNMVHFVIAE----PHCDGNDINIGCPQMVAKRGHYGAY 211
R H DD PL+ + N FV A P+CDG D+N GCPQ A YGA
Sbjct: 61 RAHEFQTDTDDRPLIVQF-GANNSSDFVNASNLIIPYCDGVDLNCGCPQRWALNEGYGAQ 119
Query: 212 L 212
L
Sbjct: 120 L 120
>gi|351708848|gb|EHB11767.1| tRNA-dihydrouridine synthase 4-like protein [Heterocephalus glaber]
Length = 317
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA + P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSDAACIVCPYANGIDINCGCPQRWAMAEGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVQDMV 141
>gi|410910122|ref|XP_003968539.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Takifugu rubripes]
Length = 305
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F ND++ L +AA + P DG+D+N GCPQ A YGA L + L+ ++V
Sbjct: 68 VQFAANDAQTLADAACIVAPFSDGVDLNCGCPQRWAMSAGYGACLINKPELVKDMV 123
Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVH 51
P DG+D+N GCPQ A YGA L + L+ ++V H
Sbjct: 87 PFSDGVDLNCGCPQRWAMSAGYGACLINKPELVKDMVTH 125
>gi|227822301|ref|YP_002826272.1| tRNA-dihydrouridine synthase A [Sinorhizobium fredii NGR234]
gi|227341301|gb|ACP25519.1| putative tRNA-dihydrouridine synthase A [Sinorhizobium fredii
NGR234]
Length = 385
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 67/166 (40%), Gaps = 15/166 (9%)
Query: 57 KNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCG 116
+ G F P+F P D D + + A++ A L + + + R + G
Sbjct: 12 EKGRYFKRPVFAVAPMIDWTDRHY---RFFARQLSRHALLYTEMIVADAILRGDRDRLLG 68
Query: 117 H-------SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWP 168
H +L GND + EAA++AE D I++N+GCP + G +GA L +
Sbjct: 69 HDAAEHPVALQLGGNDPAKMAEAARIAEAFGYDEINMNVGCPSDRVQSGTFGACLMQEPA 128
Query: 169 LLTNLVYSPNMVHFVIAEPHC----DGNDINIGCPQMVAKRGHYGA 210
L+ V + + C D D + +VA+ GA
Sbjct: 129 LVAECVAAMKEAVTIPVTVKCRIGVDDQDPEVALRALVARVKSAGA 174
>gi|253742273|gb|EES99116.1| tRNA-dihydrouridine synthase [Giardia intestinalis ATCC 50581]
Length = 409
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 119 LMFCGNDSKNLTEAAKLAE-----PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 170
L CGN+ N AAK+ P +D+N+GCP A YG Y+ +WPL+
Sbjct: 117 LQLCGNNPSNFLAAAKVLSSSSLAPQIIALDVNLGCPASCASSRGYGLYIAQNWPLV 173
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
P +D+N+GCP A YG Y+ +WPL+ +++ S
Sbjct: 141 PQIIALDVNLGCPASCASSRGYGLYIAQNWPLVHQILSEVS 181
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 71 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
P +D+N+GCP A YG Y+ +WPL+ ++
Sbjct: 141 PQIIALDVNLGCPASCASSRGYGLYIAQNWPLVHQI 176
>gi|355685047|gb|AER97602.1| dihydrouridine synthase 4-like protein [Mustela putorius furo]
Length = 174
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
F ND++ L++AA++ P+ +G+DIN GCPQ A YGA L + L+ ++V
Sbjct: 1 FAANDARLLSDAARIVCPYANGVDINCGCPQRWAMAEGYGACLINKPELVRDMV 54
>gi|378826226|ref|YP_005188958.1| tRNA-dihydrouridine synthase A [Sinorhizobium fredii HH103]
gi|365179278|emb|CCE96133.1| tRNA-dihydrouridine synthase A [Sinorhizobium fredii HH103]
Length = 385
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 15/155 (9%)
Query: 62 FMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGH---- 117
F GP+F P D D + + A++ A L + + + R + GH
Sbjct: 17 FKGPVFAVAPMIDWTDRHY---RFFARQLSRHALLYTEMIVADAILRGDRDRLLGHDASE 73
Query: 118 ---SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 173
+L GND + EAA++AE D I++N+GCP + G +GA L + L+
Sbjct: 74 HPVALQLGGNDPAKMAEAARIAEGFGYDEINMNVGCPSDRVQSGTFGACLMQEPALVAEC 133
Query: 174 VYSPNMVHFVIAEPHC----DGNDINIGCPQMVAK 204
V + + C D D + +VA+
Sbjct: 134 VAAMKAAVTIPVTVKCRIGVDDQDPEVALRALVAR 168
>gi|322795085|gb|EFZ17930.1| hypothetical protein SINV_15746 [Solenopsis invicta]
Length = 357
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
+ F N + +A+ + P+C+G+D+N GCPQ A + YGA L L+ +LVY
Sbjct: 80 VQFAANTVNDFVDASVMVAPYCNGVDLNCGCPQRWAMQEGYGADLLKKPELVKDLVY 136
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELG 107
L+V F+ + N F+ + P+C+G+D+N GCPQ A + YGA L L+ +L
Sbjct: 78 LIVQFAANTVND--FVDASVMVAPYCNGVDLNCGCPQRWAMQEGYGADLLKKPELVKDLV 135
Query: 108 FKTRSHM 114
++ R+ +
Sbjct: 136 YQVRNRI 142
Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+C+G+D+N GCPQ A + YGA L L+ +LV
Sbjct: 99 PYCNGVDLNCGCPQRWAMQEGYGADLLKKPELVKDLV 135
>gi|345327855|ref|XP_003431210.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine synthase 4-like
[Ornithorhynchus anatinus]
Length = 411
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F D++ L +AA L P+ +GID+N GCPQ A YGA L ++ L+ ++V
Sbjct: 180 VQFAAKDAQLLADAATLVRPYANGIDVNCGCPQRWAMAEGYGACLINNPELVRDMV 235
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 39 QDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
Q D PL+ + + +K+ L + P+ +GID+N GCPQ A YGA L +
Sbjct: 173 QGDRPLIVQ------FAAKDAQLLADAATLVRPYANGIDVNCGCPQRWAMAEGYGACLIN 226
Query: 99 DWPLLTELGFKTRSHM 114
+ L+ ++ + R+ +
Sbjct: 227 NPELVRDMVRQVRNQV 242
>gi|322701572|gb|EFY93321.1| Dihydrouridine synthase [Metarhizium acridum CQMa 102]
Length = 354
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 82 CPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCD 141
P ++AK + + +D ++L T + L F N+ L A+ LA P
Sbjct: 23 TPMILAKEFNRSEFARD-----SDLTISTTAAQPPTILQFGANNPLELARASSLAAPFVS 77
Query: 142 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
G+D+N GCPQ A GA L D L+ ++V
Sbjct: 78 GVDLNCGCPQSWACAETLGAALMDQRALVRDMV 110
>gi|242011621|ref|XP_002426546.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]
gi|212510683|gb|EEB13808.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]
Length = 332
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 94 AYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMV 153
++++ + + E F T S+ + F N++ + +EAAKL P DG+D+N GCPQ
Sbjct: 48 SFIKSEKARINE--FTTSSNDSPVIVQFAANNTFDFSEAAKLVFPFSDGVDLNCGCPQRW 105
Query: 154 AKRGHYGAYLQDDWPLLTNLV 174
A + GA L + + ++V
Sbjct: 106 AMKIGIGAQLLSEPETIKDIV 126
>gi|123414609|ref|XP_001304522.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121885980|gb|EAX91592.1| hypothetical protein TVAG_323330 [Trichomonas vaginalis G3]
Length = 322
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 25/122 (20%)
Query: 87 AKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDIN 146
+ R Y D PL+ ++ GND L AK + GIDIN
Sbjct: 58 SSRNSYFQTCSQDRPLIIQMS---------------GNDESELIACAKDLQQFAVGIDIN 102
Query: 147 IGCPQMVAKRGHYGAYLQDD-------WPLLTNLVYSPNM---VHFVIAEPHCDGNDINI 196
GC Q +A+RG YG ++ ++ ++ N+V S N+ + F + + D++I
Sbjct: 103 CGCTQHIARRGQYGYFMVNNENKRKNVIEMVKNIVASINVPLSIKFRLIDGEDGKPDVDI 162
Query: 197 GC 198
C
Sbjct: 163 TC 164
>gi|47192407|emb|CAF87237.1| unnamed protein product [Tetraodon nigroviridis]
Length = 142
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T H + F ++++ L +AA + P DG+DIN GCPQ A YGA L +
Sbjct: 57 FTTNQHDRPLIVQFAADNAQTLADAACVVAPFSDGVDINCGCPQRWAMSAGYGACLINKP 116
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 117 ELVKDMV 123
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 39 QDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
Q D PL+ + + + N + P DG+DIN GCPQ A YGA L +
Sbjct: 61 QHDRPLIVQ------FAADNAQTLADAACVVAPFSDGVDINCGCPQRWAMSAGYGACLIN 114
Query: 99 DWPLLTELGFKTRSHM 114
L+ ++ + R+ +
Sbjct: 115 KPELVKDMVARVRNQV 130
>gi|381191476|ref|ZP_09898986.1| tRNA-dihydrouridine synthase A [Thermus sp. RL]
gi|380450836|gb|EIA38450.1| tRNA-dihydrouridine synthase A [Thermus sp. RL]
Length = 342
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 13/113 (11%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGA--- 161
L F+ H +L G+D K+L EAA++ E D I++N+GCP A+ G YGA
Sbjct: 51 LAFRPEEHPI--ALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLL 108
Query: 162 ----YLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGA 210
+Q+ + V P V + +G + G Q V GA
Sbjct: 109 LDLVRVQEILKAMXEAVRVPVTVKMRLG---LEGKETYRGLAQSVEAMAEAGA 158
>gi|158424712|ref|YP_001526004.1| nitrogen regulation protein [Azorhizobium caulinodans ORS 571]
gi|158331601|dbj|BAF89086.1| nitrogen regulation protein [Azorhizobium caulinodans ORS 571]
Length = 365
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 117 HSLMFCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
H++ GN+ + EAA+LAE I DIN+GCP G GA L D PL T ++
Sbjct: 98 HAVQLAGNEPHWMAEAARLAEASGAAIIDINMGCPAKRVTTGAAGAALLRDLPLATRILE 157
Query: 176 S 176
+
Sbjct: 158 A 158
>gi|398800266|ref|ZP_10559539.1| tRNA dihydrouridine synthase A [Pantoea sp. GM01]
gi|398095794|gb|EJL86127.1| tRNA dihydrouridine synthase A [Pantoea sp. GM01]
Length = 332
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +D+ PL +LG G+D L + AKLAE D I++N+
Sbjct: 50 KGDYLAYSEDEHPLALQLG---------------GSDPAALAQCAKLAEERGYDEINLNV 94
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L D L+ + +
Sbjct: 95 GCPSDRVQNGRFGACLMADAALVADCI 121
>gi|332022244|gb|EGI62559.1| tRNA-dihydrouridine synthase 4-like protein [Acromyrmex echinatior]
Length = 745
Score = 45.4 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
+ F + A+ + P+C+G+D+N GCPQ A + YGA L L+ +LVY
Sbjct: 73 VQFAAKTVNDFVSASVMVAPYCNGVDLNCGCPQRWAMQEGYGADLLKKPELVKDLVY 129
Score = 43.9 bits (102), Expect = 0.058, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELG 107
L+V F+ + N F+ + P+C+G+D+N GCPQ A + YGA L L+ +L
Sbjct: 71 LIVQFAAKTVND--FVSASVMVAPYCNGVDLNCGCPQRWAMQEGYGADLLKKPELVKDLV 128
Query: 108 FKTRSHM 114
++ R+ +
Sbjct: 129 YQVRNRI 135
Score = 39.3 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+C+G+D+N GCPQ A + YGA L L+ +LV
Sbjct: 92 PYCNGVDLNCGCPQRWAMQEGYGADLLKKPELVKDLV 128
>gi|323450369|gb|EGB06251.1| hypothetical protein AURANDRAFT_72033 [Aureococcus anophagefferens]
Length = 2222
Score = 45.4 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 15 CDGIDINIGCPQMVAKRGHYGAYLQDD 41
CD +D+N+GCPQ A+RG YGA+ +D
Sbjct: 96 CDAVDVNLGCPQSCARRGGYGAFTDED 122
Score = 45.4 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 73 CDGIDINIGCPQMVAKRGHYGAYLQDD 99
CD +D+N+GCPQ A+RG YGA+ +D
Sbjct: 96 CDAVDVNLGCPQSCARRGGYGAFTDED 122
Score = 45.4 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 140 CDGIDINIGCPQMVAKRGHYGAYLQDD 166
CD +D+N+GCPQ A+RG YGA+ +D
Sbjct: 96 CDAVDVNLGCPQSCARRGGYGAFTDED 122
Score = 43.1 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 189 CDGNDINIGCPQMVAKRGHYGAYLQDD 215
CD D+N+GCPQ A+RG YGA+ +D
Sbjct: 96 CDAVDVNLGCPQSCARRGGYGAFTDED 122
>gi|50122581|ref|YP_051748.1| tRNA-dihydrouridine synthase A [Pectobacterium atrosepticum
SCRI1043]
gi|49613107|emb|CAG76558.1| putative dihydrouridine synthase [Pectobacterium atrosepticum
SCRI1043]
Length = 340
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 23/132 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ PL +LG G+D + L + AKLAE D +++N+
Sbjct: 64 KGDYLAYSEEEHPLALQLG---------------GSDPQALAQCAKLAEQRGYDEVNLNV 108
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS-------PNMVHFVIAEPHCDGNDINIGCPQ 200
GCP + G +GA L D L+ + + + P V I D + Q
Sbjct: 109 GCPSDRVQNGRFGACLMGDAALVADCIKAMKDSTSIPITVKTRIGIDDQDSYEFLCEFIQ 168
Query: 201 MVAKRGHYGAYL 212
VA+RG ++
Sbjct: 169 TVAERGECDTFI 180
>gi|322705649|gb|EFY97233.1| Dihydrouridine synthase [Metarhizium anisopliae ARSEF 23]
Length = 339
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 83 PQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDG 142
P ++AK + + +D ++L T + L F N L A+ LA P G
Sbjct: 24 PMILAKEFNRSEFARD-----SDLTISTTAAQPPTILQFGANTPLELARASSLAAPFVSG 78
Query: 143 IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+D+N GCPQ A GA L D L+ ++V
Sbjct: 79 VDLNCGCPQSWACAETLGAALMDQRALVRDMV 110
>gi|290982534|ref|XP_002673985.1| predicted protein [Naegleria gruberi]
gi|284087572|gb|EFC41241.1| predicted protein [Naegleria gruberi]
Length = 427
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ F N+ + + A +LA P+CDGID+N GCPQ + GA L + ++V+ N
Sbjct: 183 VQFAANNPTDFSLACQLAAPYCDGIDLNCGCPQPYVMKESLGAALVTKPQKIFDMVHEAN 242
Score = 37.0 bits (84), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYL 96
LVV F+ + N F +A P+CDGID+N GCPQ + GA L
Sbjct: 181 LVVQFA--ANNPTDFSLACQLAAPYCDGIDLNCGCPQPYVMKESLGAAL 227
>gi|334316538|ref|YP_004549157.1| dihydrouridine synthase DuS [Sinorhizobium meliloti AK83]
gi|334095532|gb|AEG53543.1| dihydrouridine synthase DuS [Sinorhizobium meliloti AK83]
Length = 385
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 11/129 (8%)
Query: 56 SKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMC 115
++ G F GP+F P D D + + A++ A L + + + R +
Sbjct: 11 TRKGRYFNGPVFAVAPMIDWTDRHY---RFFARQLSSHALLYTEMIVADAILRGDREKLL 67
Query: 116 GH-------SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDW 167
GH +L G+D + EAA++AE D I++N+GCP + G +GA L +
Sbjct: 68 GHDTSEHPVALQLGGSDPAKMAEAARIAEGFGYDEINMNVGCPSDRVQSGTFGACLMQEP 127
Query: 168 PLLTNLVYS 176
L+ + + +
Sbjct: 128 ALVADCIAA 136
>gi|350423981|ref|XP_003493652.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Bombus impatiens]
Length = 349
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELG 107
LVV F+ +KN F+ + P+C+G+D+N GCPQ A + YGA L L+ +L
Sbjct: 71 LVVQFA--AKNVYDFLNATELVAPYCNGVDLNCGCPQRWALKDGYGADLLKKPDLVKDLI 128
Query: 108 FKTRSHM 114
++ R+ +
Sbjct: 129 YQVRNRI 135
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
+ F + + A +L P+C+G+D+N GCPQ A + YGA L L+ +L+Y
Sbjct: 73 VQFAAKNVYDFLNATELVAPYCNGVDLNCGCPQRWALKDGYGADLLKKPDLVKDLIY 129
>gi|119776187|ref|YP_928927.1| tRNA-dihydrouridine synthase A [Shewanella amazonensis SB2B]
gi|119768687|gb|ABM01258.1| TIM-barrel protein, yjbN family [Shewanella amazonensis SB2B]
Length = 326
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY Q++ PL +LG G+D K+L AKLAE D ++IN+
Sbjct: 49 KGDYLAYNQEEHPLALQLG---------------GSDPKDLATCAKLAEARGYDEVNINV 93
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ V
Sbjct: 94 GCPSDRVQNGRFGACLMAEPKLVAECV 120
>gi|148228148|ref|NP_001089272.1| dihydrouridine synthase 4-like [Xenopus laevis]
gi|58702004|gb|AAH90192.1| MGC85035 protein [Xenopus laevis]
Length = 308
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F +++ L +AA L P GID+N GCPQ A YGA L ++
Sbjct: 65 FTTNQGDCPLIVQFAAKEAQVLADAASLVSPFASGIDLNCGCPQRWAMAEGYGACLINNP 124
Query: 168 PLLTNLV 174
L++++V
Sbjct: 125 ELVSDMV 131
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 39 QDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
Q D PL+ + + +K + + P GID+N GCPQ A YGA L +
Sbjct: 69 QGDCPLIVQ------FAAKEAQVLADAASLVSPFASGIDLNCGCPQRWAMAEGYGACLIN 122
Query: 99 DWPLLTELGFKTRSHM 114
+ L++++ + R+ +
Sbjct: 123 NPELVSDMVRQVRNQV 138
>gi|68071985|ref|XP_677906.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56498194|emb|CAH96102.1| conserved hypothetical protein [Plasmodium berghei]
Length = 441
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 106 LGFKTRSH--MCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQM-VAKRGHYGA 161
LGF H +C G+D +L+EAA L E D ++IN+GCP VA +G +GA
Sbjct: 111 LGFNKNEHPIVC----QLGGSDPISLSEAAILVEQAGYDELNINVGCPSTKVANKGAFGA 166
Query: 162 YLQDDWPLLTNLVY 175
YL L+ N+VY
Sbjct: 167 YLMKKPQLVKNIVY 180
>gi|381189929|ref|ZP_09897454.1| tRNA-dihydrouridine synthase A [Thermus sp. RL]
gi|380452506|gb|EIA40105.1| tRNA-dihydrouridine synthase A [Thermus sp. RL]
Length = 342
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 13/113 (11%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGA--- 161
L F+ H +L G+D K+L EAA++ E D I++N+GCP A+ G YGA
Sbjct: 51 LAFRPEEHPI--ALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLL 108
Query: 162 ----YLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGA 210
+Q+ + V P V + +G + G Q V GA
Sbjct: 109 LDLVRVQEILKAMGEAVRVPVTVKMRLG---LEGKETYRGLAQSVEAMAEAGA 158
>gi|395785656|ref|ZP_10465384.1| hypothetical protein ME5_00702 [Bartonella tamiae Th239]
gi|423717452|ref|ZP_17691642.1| hypothetical protein MEG_01182 [Bartonella tamiae Th307]
gi|395424114|gb|EJF90301.1| hypothetical protein ME5_00702 [Bartonella tamiae Th239]
gi|395427667|gb|EJF93758.1| hypothetical protein MEG_01182 [Bartonella tamiae Th307]
Length = 328
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 114 MCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTN 172
+ H + G ++K + AA++A E H D IDIN+GCP G+ GA L D L +
Sbjct: 70 LSSHVIQLAGREAKWMALAAEIAQEAHVDMIDINMGCPAKKVTGGYSGAALMRDIKLSMS 129
Query: 173 LVYS 176
L+ S
Sbjct: 130 LIES 133
>gi|389583025|dbj|GAB65761.1| tRNA-dihydrouridine synthase A, partial [Plasmodium cynomolgi
strain B]
Length = 485
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 8/74 (10%)
Query: 106 LGFKTRSH--MCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQM-VAKRGHYGA 161
LGF + H +C G+D+ +L EAA L E D I++N+GCP VA +G +GA
Sbjct: 160 LGFNSNEHPVVC----QLGGSDATSLAEAAVLVEQAGYDEINLNVGCPSTKVANKGAFGA 215
Query: 162 YLQDDWPLLTNLVY 175
YL L+ ++VY
Sbjct: 216 YLMKKPELVRSIVY 229
>gi|357613396|gb|EHJ68482.1| tRNA-dihydrouridine synthase [Danaus plexippus]
Length = 366
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 27/129 (20%)
Query: 50 VHFSWVSKN--GPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELG 107
V F + KN L P+ +A+ C Q R + +D PL+ +
Sbjct: 7 VQFRTLVKNYGVDLCFTPMILADSFC----------QNEKARSNEFITTTNDTPLIVQ-- 54
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F N+ + +A++L P+ DG+D+N GCPQ A + YG L
Sbjct: 55 -------------FAANNVDDFVDASQLVYPYADGVDLNCGCPQRWAMKDGYGCALLSRP 101
Query: 168 PLLTNLVYS 176
L+ NL+ S
Sbjct: 102 ELVHNLLRS 110
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 46 TELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTE 105
T L+V F+ + N F+ + P+ DG+D+N GCPQ A + YG L L+
Sbjct: 49 TPLIVQFA--ANNVDDFVDASQLVYPYADGVDLNCGCPQRWAMKDGYGCALLSRPELVHN 106
Query: 106 LGFKTRSHMCGH 117
L R+++ H
Sbjct: 107 LLRSVRNNLPSH 118
>gi|340371111|ref|XP_003384089.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Amphimedon
queenslandica]
Length = 312
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
F N+ ++ + A++L P D +D+N GCPQ A YG+YL L+ ++V V
Sbjct: 83 FAANNVEDFSRASQLVSPFVDAVDLNCGCPQRWAMEEGYGSYLITRPELVCDMVRGAKRV 142
>gi|260818049|ref|XP_002603897.1| hypothetical protein BRAFLDRAFT_129997 [Branchiostoma floridae]
gi|229289221|gb|EEN59908.1| hypothetical protein BRAFLDRAFT_129997 [Branchiostoma floridae]
Length = 347
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T S + F D L +AA++ P+ DG+D+N GCPQ A YG+ L +
Sbjct: 74 FTTNSADRPLVVQFAARDGVTLADAAEIVAPYSDGVDLNCGCPQRWAMAEGYGSCLLKNP 133
Query: 168 PLLTNLV 174
L++++V
Sbjct: 134 ELVSDMV 140
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELG 107
LVV F+ +++G I P+ DG+D+N GCPQ A YG+ L + L++++
Sbjct: 83 LVVQFA--ARDGVTLADAAEIVAPYSDGVDLNCGCPQRWAMAEGYGSCLLKNPELVSDMV 140
Query: 108 FKTRSHM 114
+ ++ +
Sbjct: 141 RQAKARV 147
>gi|150396830|ref|YP_001327297.1| tRNA-dihydrouridine synthase A [Sinorhizobium medicae WSM419]
gi|150028345|gb|ABR60462.1| dihydrouridine synthase DuS [Sinorhizobium medicae WSM419]
Length = 385
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
Query: 56 SKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMC 115
+K F GP+F P D D + V R A L + + + R+ +
Sbjct: 11 AKRTAYFNGPVFAVAPMIDWTDRHYRFFARVLSRH---ALLYTEMIVADAVLRGDRAKLL 67
Query: 116 GH-------SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDW 167
GH +L GND + EAA++ E + D I++N+GCP + G +GA L +
Sbjct: 68 GHDASEHPVALQLGGNDPVKMAEAARIGEAYGYDEINMNVGCPSDRVQSGTFGACLMQEP 127
Query: 168 PLLTNLVYS 176
L+ + + +
Sbjct: 128 ALVADCIAA 136
>gi|164657526|ref|XP_001729889.1| hypothetical protein MGL_2875 [Malassezia globosa CBS 7966]
gi|159103783|gb|EDP42675.1| hypothetical protein MGL_2875 [Malassezia globosa CBS 7966]
Length = 308
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
+ S L +AA+L P+ DGID+N GCPQ A G+YL ++ L+ +++ + V
Sbjct: 49 LAASHSSPLADAAELVSPYVDGIDLNCGCPQPWAYEERVGSYLLEEPELVADMIRT---V 105
Query: 181 HFVIAEPHCDGNDINI 196
+ + +C I I
Sbjct: 106 KGRLGDAYCVSVKIRI 121
>gi|405961217|gb|EKC27051.1| tRNA-dihydrouridine synthase 4-like protein [Crassostrea gigas]
Length = 317
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F N+ +L AA++ P+ DG+D+N GCPQ A YGA L L+ ++V
Sbjct: 80 VQFAANNGNDLAAAAEIVSPYSDGVDLNCGCPQRWAMAEGYGACLIKKPELVRDMV 135
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELG 107
L+V F+ + NG I P+ DG+D+N GCPQ A YGA L L+ ++
Sbjct: 78 LIVQFA--ANNGNDLAAAAEIVSPYSDGVDLNCGCPQRWAMAEGYGACLIKKPELVRDMV 135
Query: 108 FKTRSHMCG 116
+TR+ +C
Sbjct: 136 NQTRARVCS 144
>gi|354596235|ref|ZP_09014252.1| TIM-barrel protein, yjbN family [Brenneria sp. EniD312]
gi|353674170|gb|EHD20203.1| TIM-barrel protein, yjbN family [Brenneria sp. EniD312]
Length = 346
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ PL +LG G+D + L + A+LAE D +++N+
Sbjct: 68 KGDYLAYSEEEHPLALQLG---------------GSDPEALAQCAQLAEQRGYDEVNLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G +GA L + PL+ + V +
Sbjct: 113 GCPSDRVQNGRFGACLMGEAPLVADCVKA 141
>gi|398354007|ref|YP_006399471.1| tRNA-dihydrouridine synthase A [Sinorhizobium fredii USDA 257]
gi|390129333|gb|AFL52714.1| tRNA-dihydrouridine synthase A [Sinorhizobium fredii USDA 257]
Length = 385
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 62 FMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGH---- 117
F GP+F P D D + + A++ A L + + + R+ + GH
Sbjct: 17 FKGPVFAVAPMIDWTDRHY---RFFARQLSRHALLYTEMIVADAILRGDRNRLLGHDASE 73
Query: 118 ---SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 173
+L G+D + EAA++AE D I++N+GCP + G +GA L D L+
Sbjct: 74 HPVALQLGGSDPAKMAEAARIAEGFGYDEINMNVGCPSDRVQSGTFGACLMQDPALVGEC 133
Query: 174 VYS 176
V +
Sbjct: 134 VAA 136
>gi|398022244|ref|XP_003864284.1| hypothetical protein, conserved [Leishmania donovani]
gi|322502519|emb|CBZ37602.1| hypothetical protein, conserved [Leishmania donovani]
Length = 493
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 29 AKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAK 88
A+ + Y +D LVV + +K+GP + P+CDGID+N GCPQ A
Sbjct: 139 ARHAEFARYEGED-----RLVVQLA--AKSGPAAAQAAVLLRPYCDGIDLNCGCPQRWAM 191
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHM 114
+ G+ L D + ++ R+ M
Sbjct: 192 KEGIGSALLDQPERVADMVRSIRNAM 217
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 130 TEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+AA L P+CDGID+N GCPQ A + G+ L D + ++V S
Sbjct: 166 AQAAVLLRPYCDGIDLNCGCPQRWAMKEGIGSALLDQPERVADMVRS 212
>gi|157363261|ref|YP_001470028.1| dihydrouridine synthase DuS [Thermotoga lettingae TMO]
gi|157313865|gb|ABV32964.1| dihydrouridine synthase DuS [Thermotoga lettingae TMO]
Length = 305
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 108 FKTRSHMC-----GHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCP-QMVAKRGHYGA 161
FKT M ++ GND K L +AAK+ EP+ IDIN CP + V K+ GA
Sbjct: 35 FKTVQRMLPKDEPNVAVQLFGNDPKTLAQAAKIVEPYAAWIDINAACPVKKVIKKNSGGA 94
Query: 162 YLQD 165
L D
Sbjct: 95 LLND 98
>gi|443707642|gb|ELU03155.1| hypothetical protein CAPTEDRAFT_112268 [Capitella teleta]
Length = 307
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ F + +K+ +AA++ P+ DG+D+N GCPQ A + YG L LL + V
Sbjct: 75 VQFAASQAKDFADAAEIVVPYADGVDLNCGCPQKWAMQEGYGCALLKKPELLHDSVLQ-- 132
Query: 179 MVHFVIAEPHCDGNDINIG 197
A D ND I
Sbjct: 133 ------ARQRIDNNDFTIS 145
>gi|361130456|pdb|3B0V|C Chain C, Trna-Dihydrouridine Synthase From Thermus Thermophilus In
Complex With Trna
gi|361130457|pdb|3B0V|D Chain D, Trna-Dihydrouridine Synthase From Thermus Thermophilus In
Complex With Trna
Length = 363
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 164
L F+ H +L G+D K+L EAA++ E D I++N+GCP A+ G YGA L
Sbjct: 72 LAFRPEEHPI--ALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLL 129
Query: 165 DDWPLLTNLVYS 176
D + ++ +
Sbjct: 130 LDLARVREILKA 141
>gi|146098870|ref|XP_001468493.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134072861|emb|CAM71577.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 493
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 29 AKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAK 88
A+ + Y +D LVV + +K+GP + P+CDGID+N GCPQ A
Sbjct: 139 ARHAEFARYEGED-----RLVVQLA--AKSGPAAAQAAVLLRPYCDGIDLNCGCPQRWAM 191
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHM 114
+ G+ L D + ++ R+ M
Sbjct: 192 KEGIGSALLDQPERVADMVRSIRNAM 217
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 130 TEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+AA L P+CDGID+N GCPQ A + G+ L D + ++V S
Sbjct: 166 AQAAVLLRPYCDGIDLNCGCPQRWAMKEGIGSALLDQPERVADMVRS 212
>gi|156097374|ref|XP_001614720.1| tRNA-dihydrouridine synthase A [Plasmodium vivax Sal-1]
gi|148803594|gb|EDL44993.1| tRNA-dihydrouridine synthase A, putative [Plasmodium vivax]
Length = 509
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Query: 106 LGFKTRSH--MCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQM-VAKRGHYGA 161
LGF + H +C G+D+ +L EAA L E D I++N+GCP VA +G +GA
Sbjct: 184 LGFNSNEHPIVC----QLGGSDATSLAEAAVLVEQAGYDEINLNVGCPSTKVANKGAFGA 239
Query: 162 YLQDDWPLLTNLVY 175
YL + N+VY
Sbjct: 240 YLMKKPEHVRNIVY 253
>gi|378976432|ref|YP_005224573.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|419980655|ref|ZP_14495938.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419985812|ref|ZP_14500950.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419991568|ref|ZP_14506532.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419997577|ref|ZP_14512372.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420003934|ref|ZP_14518576.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420009433|ref|ZP_14523916.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420015925|ref|ZP_14530222.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420021222|ref|ZP_14535404.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420038193|ref|ZP_14551842.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420044233|ref|ZP_14557715.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420049952|ref|ZP_14563256.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420055546|ref|ZP_14568712.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420060154|ref|ZP_14573156.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420067204|ref|ZP_14579999.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420071847|ref|ZP_14584490.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420078448|ref|ZP_14590905.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420082921|ref|ZP_14595211.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421913527|ref|ZP_16343208.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|421914666|ref|ZP_16344307.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|424935574|ref|ZP_18353946.1| tRNA-dihydrouridine synthase [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|428150792|ref|ZP_18998551.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|428942393|ref|ZP_19015390.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae VA360]
gi|364515843|gb|AEW58971.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae HS11286]
gi|397345328|gb|EJJ38453.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397350360|gb|EJJ43449.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397362413|gb|EJJ55063.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397363280|gb|EJJ55921.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397367621|gb|EJJ60231.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397375785|gb|EJJ68064.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397381289|gb|EJJ73461.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397387039|gb|EJJ79089.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397404598|gb|EJJ96099.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397412235|gb|EJK03474.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397412369|gb|EJK03604.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397421653|gb|EJK12659.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397428551|gb|EJK19288.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397434293|gb|EJK24930.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397439883|gb|EJK30310.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397444790|gb|EJK35052.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397451690|gb|EJK41770.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|407809761|gb|EKF81012.1| tRNA-dihydrouridine synthase [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|410112612|emb|CCM85833.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410123082|emb|CCM86932.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|426298762|gb|EKV61144.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae VA360]
gi|427539260|emb|CCM94689.1| tRNA dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
Length = 332
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D + L + AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPQALAQCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + PL+ + +
Sbjct: 100 GCPSDRVQNGMFGACLMGNAPLVADCI 126
>gi|206576636|ref|YP_002241010.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae 342]
gi|206565694|gb|ACI07470.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae 342]
Length = 332
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D + L + AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPQALAQCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + PL+ + +
Sbjct: 100 GCPSDRVQNGMFGACLMGNAPLVADCI 126
>gi|187607636|ref|NP_001120313.1| uncharacterized protein LOC100145375 [Xenopus (Silurana)
tropicalis]
gi|156914833|gb|AAI52625.1| Zgc:92033 protein [Danio rerio]
gi|170285083|gb|AAI60936.1| LOC100145375 protein [Xenopus (Silurana) tropicalis]
Length = 306
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F D++ L +AA + P DG+D+N GCPQ A YGA L + L+ ++V
Sbjct: 74 VQFAAKDAQTLADAACVVSPFSDGVDLNCGCPQRWAMSEGYGACLINKPELVKDMV 129
>gi|55979985|ref|YP_143282.1| tRNA-dihydrouridine synthase A [Thermus thermophilus HB8]
gi|55771398|dbj|BAD69839.1| tRNA-dihydrouridine synthase [Thermus thermophilus HB8]
Length = 342
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 164
L F+ H +L G+D K+L EAA++ E D I++N+GCP A+ G YGA L
Sbjct: 51 LAFRPEEHPI--ALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLL 108
Query: 165 DDWPLLTNLVYS 176
D + ++ +
Sbjct: 109 LDLARVREILKA 120
>gi|428935408|ref|ZP_19008884.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae JHCK1]
gi|426300609|gb|EKV62885.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae JHCK1]
Length = 332
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D + L + AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPQALAQCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + PL+ + +
Sbjct: 100 GCPSDRVQNGTFGACLMGNAPLVADCI 126
>gi|401428439|ref|XP_003878702.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494951|emb|CBZ30254.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 493
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 29 AKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAK 88
A+ + Y +D LVV + +K+GP + P+CDGID+N GCPQ A
Sbjct: 139 ARHAEFARYEGED-----RLVVQLA--AKSGPAAAQAALLLRPYCDGIDLNCGCPQRWAM 191
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHM 114
+ GA L D + ++ R+ M
Sbjct: 192 KEGIGAALLDQPERVADIVRSIRNAM 217
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 137 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
P+CDGID+N GCPQ A + GA L D + ++V S
Sbjct: 173 RPYCDGIDLNCGCPQRWAMKEGIGAALLDQPERVADIVRS 212
Score = 37.0 bits (84), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CDGID+N GCPQ A + GA L D + ++V
Sbjct: 173 RPYCDGIDLNCGCPQRWAMKEGIGAALLDQPERVADIV 210
>gi|288937656|ref|YP_003441715.1| TIM-barrel protein, yjbN family [Klebsiella variicola At-22]
gi|288892365|gb|ADC60683.1| TIM-barrel protein, yjbN family [Klebsiella variicola At-22]
Length = 331
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D + L + AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPQALAQCAKLAEARGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + PL+ + +
Sbjct: 99 GCPSDRVQNGMFGACLMGNAPLVADCI 125
>gi|347300161|ref|NP_001003490.2| tRNA-dihydrouridine synthase 4-like [Danio rerio]
Length = 307
Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F D++ L +AA + P DG+D+N GCPQ A YGA L + L+ ++V
Sbjct: 75 VQFAAKDAQTLADAACVVSPFSDGVDLNCGCPQRWAMSEGYGACLINKPELVKDMV 130
>gi|238892522|ref|YP_002917256.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|238544838|dbj|BAH61189.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 331
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D + L + AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPQALAQCAKLAEARGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G +GA L + PL+ + + +
Sbjct: 99 GCPSDRVQNGMFGACLMGNAPLVADCIKA 127
>gi|419974839|ref|ZP_14490255.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|420028064|ref|ZP_14542048.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420032652|ref|ZP_14546465.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397344806|gb|EJJ37936.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397392208|gb|EJJ84012.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397397139|gb|EJJ88820.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
Length = 331
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D + L + AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPQALAQCAKLAEARGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + PL+ + +
Sbjct: 99 GCPSDRVQNGMFGACLMGNAPLVADCI 125
>gi|361130441|pdb|3B0P|A Chain A, Trna-Dihydrouridine Synthase From Thermus Thermophilus
gi|361130442|pdb|3B0P|B Chain B, Trna-Dihydrouridine Synthase From Thermus Thermophilus
gi|361130445|pdb|3B0U|X Chain X, Trna-Dihydrouridine Synthase From Thermus Thermophilus In
Complex With Trna Fragment
gi|361130446|pdb|3B0U|Y Chain Y, Trna-Dihydrouridine Synthase From Thermus Thermophilus In
Complex With Trna Fragment
Length = 350
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 164
L F+ H +L G+D K+L EAA++ E D I++N+GCP A+ G YGA L
Sbjct: 51 LAFRPEEHPI--ALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLL 108
Query: 165 DDWPLLTNLVYS 176
D + ++ +
Sbjct: 109 LDLARVREILKA 120
>gi|290512395|ref|ZP_06551762.1| tRNA-dihydrouridine synthase A [Klebsiella sp. 1_1_55]
gi|289775390|gb|EFD83391.1| tRNA-dihydrouridine synthase A [Klebsiella sp. 1_1_55]
Length = 331
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D + L + AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPQALAQCAKLAEARGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + PL+ + +
Sbjct: 99 GCPSDRVQNGMFGACLMGNAPLVADCI 125
>gi|431839387|gb|ELK01313.1| tRNA-dihydrouridine synthase 4-like protein [Pteropus alecto]
Length = 276
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMV 153
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ +
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRI 120
>gi|261822868|ref|YP_003260974.1| tRNA-dihydrouridine synthase A [Pectobacterium wasabiae WPP163]
gi|261606881|gb|ACX89367.1| TIM-barrel protein, yjbN family [Pectobacterium wasabiae WPP163]
Length = 340
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 23/132 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +D+ PL +LG G+D L + AKLAE D I++N+
Sbjct: 64 KGDYLAYSEDEHPLALQLG---------------GSDPTALAQCAKLAEQRGYDEINLNV 108
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS-------PNMVHFVIAEPHCDGNDINIGCPQ 200
GCP + G +GA L + L+ + + + P V I D + Q
Sbjct: 109 GCPSDRVQNGRFGACLMGEAALVADCIKAMKDSTSIPITVKTRIGIDDQDSYEFLCEFIQ 168
Query: 201 MVAKRGHYGAYL 212
VA RG ++
Sbjct: 169 TVAGRGECDTFI 180
>gi|50417946|gb|AAH78413.1| Zgc:92033 [Danio rerio]
Length = 285
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F D++ L +AA + P DG+D+N GCPQ A YGA L + L+ ++V
Sbjct: 53 VQFAAKDAQTLADAACVVSPFSDGVDLNCGCPQRWAMSEGYGACLINKPELVKDMV 108
>gi|225715276|gb|ACO13484.1| tRNA-dihydrouridine synthase 4-like PP35 [Esox lucius]
Length = 320
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F +D++ L +AA + P DG+D+N GCPQ A YGA L + L+ ++V
Sbjct: 80 VQFAASDAQTLADAACVVAPFSDGVDLNCGCPQRWAMSEGYGACLINKPELVKDMV 135
>gi|384535943|ref|YP_005720028.1| tRNA-dihydrouridine synthase A [Sinorhizobium meliloti SM11]
gi|336032835|gb|AEH78767.1| tRNA-dihydrouridine synthase A [Sinorhizobium meliloti SM11]
Length = 385
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 11/129 (8%)
Query: 56 SKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMC 115
+K F GP+F P D D + + A++ A L + + + R +
Sbjct: 11 AKRTAYFNGPVFAVAPMIDWTDRHY---RFFARQLSSHALLYTEMIVADAILRGDREKLL 67
Query: 116 GH-------SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDW 167
GH +L G+D + EAA++AE D I++N+GCP + G +GA L +
Sbjct: 68 GHDTSEHPVALQLGGSDPAKMAEAARIAEGFGYDEINMNVGCPSDRVQSGTFGACLMQEP 127
Query: 168 PLLTNLVYS 176
L+ + + +
Sbjct: 128 ALVADCIAA 136
>gi|46200284|ref|YP_005951.1| tRNA-dihydrouridine synthase A [Thermus thermophilus HB27]
gi|46197912|gb|AAS82324.1| nifR3-like protein [Thermus thermophilus HB27]
Length = 342
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 164
L F+ H +L G+D K+L EAA++ E D I++N+GCP A+ G YGA L
Sbjct: 51 LAFRPEEHPI--ALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLL 108
Query: 165 DDWPLLTNLVYS 176
D + ++ +
Sbjct: 109 LDLARVQEILKA 120
>gi|385873315|gb|AFI91835.1| TIM-barrel protein, yjbN family [Pectobacterium sp. SCC3193]
Length = 340
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 23/132 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +D+ PL +LG G+D L + AKLAE D I++N+
Sbjct: 64 KGDYLAYSEDEHPLALQLG---------------GSDPTALAQCAKLAEQRGYDEINLNV 108
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS-------PNMVHFVIAEPHCDGNDINIGCPQ 200
GCP + G +GA L + L+ + + + P V I D + Q
Sbjct: 109 GCPSDRVQNGRFGACLMGEAALVADCIKAMKDSTSIPITVKTRIGIDDQDSYEFLCEFIQ 168
Query: 201 MVAKRGHYGAYL 212
VA RG ++
Sbjct: 169 TVAGRGECDTFI 180
>gi|237838939|ref|XP_002368767.1| dihydrouridine synthase domain-containing protein [Toxoplasma
gondii ME49]
gi|211966431|gb|EEB01627.1| dihydrouridine synthase domain-containing protein [Toxoplasma
gondii ME49]
Length = 394
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Query: 123 GNDSKNLTEAAKLAEP-HCDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVYS---- 176
G+D K L EA KL E D I++N+GCP V +G +GA L + ++V+
Sbjct: 77 GSDPKTLAEAGKLIEKLGFDEINLNVGCPSNRVVSQGCFGAALMKTPETVRDIVHEIRRH 136
Query: 177 ---PNMVHFVIAEPHCDGNDINIGCPQMVAKRG--HYGAYLQDDW 216
P V I HCD D+ Q V+ G H+ + + W
Sbjct: 137 VQIPVTVKTRIGYDHCDSRDVLRNFVQTVSAGGCRHFIVHARKAW 181
>gi|425079376|ref|ZP_18482473.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|405607888|gb|EKB80840.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
Length = 313
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D + L + AKLAE D I++N+
Sbjct: 36 KGDYLAYSEEEHPVALQLG---------------GSDPQALAQCAKLAEARGYDEINLNV 80
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G +GA L + PL+ + + +
Sbjct: 81 GCPSDRVQNGTFGACLMGNAPLVADCIKA 109
>gi|429207920|ref|ZP_19199176.1| tRNA dihydrouridine synthase A [Rhodobacter sp. AKP1]
gi|428189313|gb|EKX57869.1| tRNA dihydrouridine synthase A [Rhodobacter sp. AKP1]
Length = 316
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 164
LGF H +L G+D L +A +LAEP+ D I++N+GCP + G +GA L
Sbjct: 44 LGFSEAEHPV--ALQLGGSDPAELAQAVRLAEPYGYDEINLNVGCPSDRVQSGCFGAVLM 101
Query: 165 DDWPLLTNLVYS 176
+ L+ + V +
Sbjct: 102 ERPALVADCVTA 113
>gi|227326002|ref|ZP_03830026.1| tRNA-dihydrouridine synthase A [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 340
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 23/132 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ PL +LG G+D + L + AKLAE D +++N+
Sbjct: 64 KGDYLAYSEEEHPLALQLG---------------GSDPQALAQCAKLAEQRGYDEVNLNV 108
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS-------PNMVHFVIAEPHCDGNDINIGCPQ 200
GCP + G +GA L + L+ + + + P V I D + Q
Sbjct: 109 GCPSDRVQNGRFGACLMGEAALVADCIKAMKDSTSIPITVKTRIGIDDQDSYEFLCDFIQ 168
Query: 201 MVAKRGHYGAYL 212
VA+RG ++
Sbjct: 169 TVAERGECDTFI 180
>gi|398796281|ref|ZP_10555894.1| tRNA dihydrouridine synthase A [Pantoea sp. YR343]
gi|398203746|gb|EJM90563.1| tRNA dihydrouridine synthase A [Pantoea sp. YR343]
Length = 332
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ PL +LG G+D L + AKLAE D I++N+
Sbjct: 50 KGDYLAYSEEEHPLALQLG---------------GSDPAALAQCAKLAEERGYDEINLNV 94
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L D L+ + +
Sbjct: 95 GCPSDRVQNGRFGACLMGDAALVADCI 121
>gi|365143210|ref|ZP_09348141.1| tRNA-dihydrouridine synthase A [Klebsiella sp. 4_1_44FAA]
gi|363649755|gb|EHL88857.1| tRNA-dihydrouridine synthase A [Klebsiella sp. 4_1_44FAA]
Length = 313
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D + L + AKLAE D I++N+
Sbjct: 36 KGDYLAYSEEEHPVALQLG---------------GSDPQALAQCAKLAEARGYDEINLNV 80
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G +GA L + PL+ + + +
Sbjct: 81 GCPSDRVQNGMFGACLMGNAPLVADCIKA 109
>gi|262045546|ref|ZP_06018567.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|330004874|ref|ZP_08305056.1| tRNA dihydrouridine synthase A [Klebsiella sp. MS 92-3]
gi|259037105|gb|EEW38355.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328536493|gb|EGF62835.1| tRNA dihydrouridine synthase A [Klebsiella sp. MS 92-3]
Length = 313
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D + L + AKLAE D I++N+
Sbjct: 36 KGDYLAYSEEEHPVALQLG---------------GSDPQALAQCAKLAEARGYDEINLNV 80
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G +GA L + PL+ + + +
Sbjct: 81 GCPSDRVQNGMFGACLMGNAPLVADCIKA 109
>gi|126461351|ref|YP_001042465.1| tRNA-dihydrouridine synthase A [Rhodobacter sphaeroides ATCC 17029]
gi|126103015|gb|ABN75693.1| TIM-barrel protein, yjbN family [Rhodobacter sphaeroides ATCC
17029]
Length = 331
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 164
LGF H +L G+D L +A +LAEP+ D I++N+GCP + G +GA L
Sbjct: 59 LGFSEAEHPV--ALQLGGSDPAELAQAVRLAEPYGYDEINLNVGCPSDRVQSGCFGAVLM 116
Query: 165 DDWPLLTNLVYS 176
+ L+ + V +
Sbjct: 117 ERPSLVADCVAA 128
>gi|50554003|ref|XP_504410.1| YALI0E26059p [Yarrowia lipolytica]
gi|49650279|emb|CAG80011.1| YALI0E26059p [Yarrowia lipolytica CLIB122]
Length = 359
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 15/78 (19%)
Query: 97 QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKR 156
+DD+PL+ +LG GN+++++ +A K+ +P+ DG+ IN GCP R
Sbjct: 96 KDDFPLIVQLG---------------GNNAEDMVKAVKMLQPYVDGVGINCGCPIKEQIR 140
Query: 157 GHYGAYLQDDWPLLTNLV 174
GA L L+ +V
Sbjct: 141 EGVGAALMTAPDLVAEMV 158
>gi|348508270|ref|XP_003441677.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Oreochromis
niloticus]
Length = 315
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F +D+++L +AA P DG+D+N GCPQ A YGA L + L+ ++V
Sbjct: 78 VQFAAHDAQSLADAACAVAPFSDGVDLNCGCPQRWAMSAGYGACLINKPELVKDMV 133
>gi|307208699|gb|EFN85989.1| tRNA-dihydrouridine synthase 4-like [Harpegnathos saltator]
Length = 351
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 87 AKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDIN 146
A+ + Y ++D PL+ + F N + A ++ P+ +G+D+N
Sbjct: 57 ARENEFTTY-KEDKPLIVQ---------------FAANTVNDFISATEMIAPYSNGVDLN 100
Query: 147 IGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
GCPQ A + YGA L L+++L+Y
Sbjct: 101 CGCPQRWAIKDGYGADLLRKPELVSDLIY 129
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 29 AKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAK 88
A+ + Y ++D PL +V F+ + N F+ + P+ +G+D+N GCPQ A
Sbjct: 57 ARENEFTTY-KEDKPL----IVQFAANTVND--FISATEMIAPYSNGVDLNCGCPQRWAI 109
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHM 114
+ YGA L L+++L ++ R+ +
Sbjct: 110 KDGYGADLLRKPELVSDLIYQVRNRI 135
>gi|332560358|ref|ZP_08414680.1| tRNA-dihydrouridine synthase A [Rhodobacter sphaeroides WS8N]
gi|332278070|gb|EGJ23385.1| tRNA-dihydrouridine synthase A [Rhodobacter sphaeroides WS8N]
Length = 313
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 164
LGF H +L G+D L +A +LAEP+ D I++N+GCP + G +GA L
Sbjct: 41 LGFSEAEHPV--ALQLGGSDPAELAQAVRLAEPYGYDEINLNVGCPSDRVQSGCFGAVLM 98
Query: 165 DDWPLLTNLVYS 176
+ L+ + V +
Sbjct: 99 ERPALVADCVAA 110
>gi|227112414|ref|ZP_03826070.1| tRNA-dihydrouridine synthase A [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 340
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 23/132 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ PL +LG G+D + L + AKLAE D +++N+
Sbjct: 64 KGDYLAYSEEEHPLALQLG---------------GSDPQALAQCAKLAEQRGYDEVNLNV 108
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS-------PNMVHFVIAEPHCDGNDINIGCPQ 200
GCP + G +GA L + L+ + + + P V I D + Q
Sbjct: 109 GCPSDRVQNGRFGACLMGEAALVADCIKAMKDSTSIPITVKTRIGIDDQDSYEFLCDFIQ 168
Query: 201 MVAKRGHYGAYL 212
VA+RG ++
Sbjct: 169 TVAERGECETFI 180
>gi|77462473|ref|YP_351977.1| tRNA-dihydrouridine synthase A [Rhodobacter sphaeroides 2.4.1]
gi|77386891|gb|ABA78076.1| tRNA-Dihydrouridine synthase [Rhodobacter sphaeroides 2.4.1]
Length = 313
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 164
LGF H +L G+D L +A +LAEP+ D I++N+GCP + G +GA L
Sbjct: 41 LGFSEAEHPV--ALQLGGSDPAELAQAVRLAEPYGYDEINLNVGCPSDRVQSGCFGAVLM 98
Query: 165 DDWPLLTNLVYS 176
+ L+ + V +
Sbjct: 99 ERPSLVADCVAA 110
>gi|253744195|gb|EET00435.1| tRNA dihydrouridine synthase, putative [Giardia intestinalis ATCC
50581]
Length = 459
Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 188 HC-DGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGILDNTG 236
HC D ++N+GCPQ VA RG YGAYL L E+ K+ + V L G
Sbjct: 104 HCFDVVELNMGCPQAVALRGKYGAYLMGHLSLAEEILKILVAVTTLSGLG 153
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 119 LMFCGNDSKNLTEA----AKLAEPHC-DGIDINIGCPQMVAKRGHYGAYL 163
L GN+ N A ++ HC D +++N+GCPQ VA RG YGAYL
Sbjct: 80 LQLSGNNPSNFEIAYNTLIQMGAGHCFDVVELNMGCPQAVALRGKYGAYL 129
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 14 HC-DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
HC D +++N+GCPQ VA RG YGAYL L E++
Sbjct: 104 HCFDVVELNMGCPQAVALRGKYGAYLMGHLSLAEEIL 140
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 72 HC-DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
HC D +++N+GCPQ VA RG YGAYL L E+
Sbjct: 104 HCFDVVELNMGCPQAVALRGKYGAYLMGHLSLAEEI 139
>gi|421098451|ref|ZP_15559120.1| tRNA dihydrouridine synthase A [Leptospira borgpetersenii str.
200901122]
gi|410798414|gb|EKS00505.1| tRNA dihydrouridine synthase A [Leptospira borgpetersenii str.
200901122]
Length = 354
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
R + +Y ++ PL +LG G+D K L+E++K+AE + I++N+
Sbjct: 55 RRRFLSYSLEELPLAIQLG---------------GDDPKALSESSKIAEDYGYSEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G++GA L + + LVY+
Sbjct: 100 GCPSDRVREGNFGACLMETPEKVAELVYA 128
>gi|381190103|ref|ZP_09897627.1| tRNA-dihydrouridine synthase A [Thermus sp. RL]
gi|384430560|ref|YP_005639920.1| dihydrouridine synthase DuS [Thermus thermophilus SG0.5JP17-16]
gi|333966028|gb|AEG32793.1| dihydrouridine synthase DuS [Thermus thermophilus SG0.5JP17-16]
gi|380452133|gb|EIA39733.1| tRNA-dihydrouridine synthase A [Thermus sp. RL]
Length = 342
Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 164
L F+ H +L G+D K+L EAA++ E D I++N+GCP A+ G YGA L
Sbjct: 51 LAFRPEEHPI--ALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLL 108
Query: 165 DD 166
D
Sbjct: 109 LD 110
>gi|323455788|gb|EGB11656.1| hypothetical protein AURANDRAFT_20791, partial [Aureococcus
anophagefferens]
Length = 132
Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 15/85 (17%)
Query: 82 CPQMVAKRGHYGAYLQD---DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP 138
CPQ RG+ + Q DWPL+ + + D N
Sbjct: 59 CPQR--GRGYLARHFQTGDGDWPLVAQFAGADEDEVSRSVARVLERDPTN---------- 106
Query: 139 HCDGIDINIGCPQMVAKRGHYGAYL 163
+ +D+N+GCPQ +A++G YGA+L
Sbjct: 107 NVVALDLNLGCPQQIARKGRYGAFL 131
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 13/75 (17%)
Query: 149 CPQMVAKRGHYGAYLQD---DWPLLTNLV------YSPNMVHFVIAEP--HCDGNDINIG 197
CPQ RG+ + Q DWPL+ S ++ + +P + D+N+G
Sbjct: 59 CPQR--GRGYLARHFQTGDGDWPLVAQFAGADEDEVSRSVARVLERDPTNNVVALDLNLG 116
Query: 198 CPQMVAKRGHYGAYL 212
CPQ +A++G YGA+L
Sbjct: 117 CPQQIARKGRYGAFL 131
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 12/79 (15%)
Query: 24 CPQMVAKRGHYGAYLQD---DWPLLTELV-VHFSWVSKNGPLFMGPLFIAEP--HCDGID 77
CPQ RG+ + Q DWPL+ + VS++ + + +P + +D
Sbjct: 59 CPQR--GRGYLARHFQTGDGDWPLVAQFAGADEDEVSRS----VARVLERDPTNNVVALD 112
Query: 78 INIGCPQMVAKRGHYGAYL 96
+N+GCPQ +A++G YGA+L
Sbjct: 113 LNLGCPQQIARKGRYGAFL 131
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Query: 9 IETEP--HCDGIDINIGCPQMVAKRGHYGAYL 38
+E +P + +D+N+GCPQ +A++G YGA+L
Sbjct: 100 LERDPTNNVVALDLNLGCPQQIARKGRYGAFL 131
>gi|328779117|ref|XP_623545.2| PREDICTED: tRNA-dihydrouridine synthase 4-like [Apis mellifera]
Length = 349
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
+ F + + AA+L P+C G+D+N GCPQ A + YGA L + +L+Y
Sbjct: 73 VQFAAKNVYDFLNAAELVAPYCSGVDLNCGCPQRWALKEGYGADLLKKPDFVKDLIY 129
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELG 107
L+V F+ +KN F+ + P+C G+D+N GCPQ A + YGA L + +L
Sbjct: 71 LIVQFA--AKNVYDFLNAAELVAPYCSGVDLNCGCPQRWALKEGYGADLLKKPDFVKDLI 128
Query: 108 FKTRSHM 114
++ R+ +
Sbjct: 129 YQVRNRI 135
>gi|380024345|ref|XP_003695961.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Apis florea]
Length = 349
Score = 43.5 bits (101), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
+ F + + AA+L P+C G+D+N GCPQ A + YGA L + +L+Y
Sbjct: 73 VQFAAKNVYDFLNAAELVAPYCSGVDLNCGCPQRWALKEGYGADLLKKPDFVKDLIY 129
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELG 107
L+V F+ +KN F+ + P+C G+D+N GCPQ A + YGA L + +L
Sbjct: 71 LIVQFA--AKNVYDFLNAAELVAPYCSGVDLNCGCPQRWALKEGYGADLLKKPDFVKDLI 128
Query: 108 FKTRSHM 114
++ R+ +
Sbjct: 129 YQVRNRI 135
>gi|349501068|ref|NP_001007929.2| tRNA-dihydrouridine synthase 4-like [Xenopus (Silurana) tropicalis]
Length = 315
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F +++ L +AA L P GID+N GCPQ A YGA L ++ L++++V
Sbjct: 83 VQFAAKEAQVLADAASLVSPFASGIDLNCGCPQRWAMAEGYGACLINNPELVSDMV 138
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 39 QDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
Q D PL+ + + +K + + P GID+N GCPQ A YGA L +
Sbjct: 76 QGDRPLIVQ------FAAKEAQVLADAASLVSPFASGIDLNCGCPQRWAMAEGYGACLIN 129
Query: 99 DWPLLTELGFKTRSHM 114
+ L++++ + R+ +
Sbjct: 130 NPELVSDMVKQVRNQV 145
>gi|221638336|ref|YP_002524598.1| tRNA-dihydrouridine synthase A [Rhodobacter sphaeroides KD131]
gi|221159117|gb|ACM00097.1| TIM-barrel protein, yjbN family [Rhodobacter sphaeroides KD131]
Length = 313
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 164
LGF H +L G+D L +A +LAEP+ D I++N+GCP + G +GA L
Sbjct: 41 LGFSEAEHPV--ALQLGGSDPAELAQAVRLAEPYGYDEINLNVGCPSDRVQSGCFGAVLM 98
Query: 165 DDWPLLTNLVYS 176
+ L+ + V +
Sbjct: 99 ERPSLVADCVAA 110
>gi|403059923|ref|YP_006648140.1| yjbN family TIM-barrel protein [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402807249|gb|AFR04887.1| TIM-barrel protein, yjbN family [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 340
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 23/132 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ PL +LG G+D + L + AKLAE D +++N+
Sbjct: 64 KGDYLAYSEEEHPLALQLG---------------GSDPQALAQCAKLAEQRGYDEVNLNV 108
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS-------PNMVHFVIAEPHCDGNDINIGCPQ 200
GCP + G +GA L + L+ + + + P V I D + Q
Sbjct: 109 GCPSDRVQNGRFGACLMGEAALVADCIKAMKDSTSIPITVKTRIGIDDQDSYEFLCDFIQ 168
Query: 201 MVAKRGHYGAYL 212
VA+RG ++
Sbjct: 169 TVAERGECETFI 180
>gi|321469164|gb|EFX80145.1| hypothetical protein DAPPUDRAFT_304174 [Daphnia pulex]
Length = 303
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F ++S + AA+L C+G+D+N GCPQ A + YGA L + LL ++V
Sbjct: 70 VQFAAHNSTDFATAAELVASTCNGVDLNCGCPQKWAMQQGYGACLINKPELLRDVV 125
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 41 DWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 100
D PL+ + H N F + C+G+D+N GCPQ A + YGA L +
Sbjct: 65 DQPLIVQFAAH------NSTDFATAAELVASTCNGVDLNCGCPQKWAMQQGYGACLINKP 118
Query: 101 PLLTELGFKTRSHM 114
LL ++ +TR+ +
Sbjct: 119 ELLRDVVLQTRNRI 132
>gi|432890721|ref|XP_004075495.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Oryzias latipes]
Length = 320
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F D + L +AA + P DG+D+N GCPQ A YGA L + L+ ++V
Sbjct: 78 VQFAAQDPQTLADAACVVAPFSDGVDLNCGCPQRWAMSAGYGACLINKPELVEDMV 133
>gi|89266831|emb|CAJ83965.1| dihydrouridine synthase 4-like (S. cerevisiae) [Xenopus (Silurana)
tropicalis]
Length = 324
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F +++ L +AA L P GID+N GCPQ A YGA L ++ L++++V
Sbjct: 92 VQFAAKEAQVLADAASLVSPFASGIDLNCGCPQRWAMAEGYGACLINNPELVSDMV 147
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 39 QDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
Q D PL+ + + +K + + P GID+N GCPQ A YGA L +
Sbjct: 85 QGDRPLIVQ------FAAKEAQVLADAASLVSPFASGIDLNCGCPQRWAMAEGYGACLIN 138
Query: 99 DWPLLTELGFKTRSHM 114
+ L++++ + R+ +
Sbjct: 139 NPELVSDMVKQVRNQV 154
>gi|391325013|ref|XP_003737035.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Metaseiulus occidentalis]
Length = 303
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ F +D + AA++ P DG+D+N GCPQ A + HYG ++ L+ +++ +
Sbjct: 73 VQFASHDPEEFALAAEMVSPLSDGVDLNCGCPQRWAIQEHYGCWMLSQPELVADMIRT 130
>gi|328851127|gb|EGG00285.1| hypothetical protein MELLADRAFT_93719 [Melampsora larici-populina
98AG31]
Length = 321
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 123 GNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GN+S + AA+L +P+ DGIDIN GCPQ A + G+ L L+ +LV
Sbjct: 75 GNESFYMAHAAELLQPYVDGIDINCGCPQSWAYKEGIGSALLRKPDLVRDLV 126
>gi|51513200|gb|AAH80375.1| MGC79829 protein [Xenopus (Silurana) tropicalis]
Length = 308
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F +++ L +AA L P GID+N GCPQ A YGA L ++ L++++V
Sbjct: 76 VQFAAKEAQVLADAASLVSPFASGIDLNCGCPQRWAMAEGYGACLINNPELVSDMV 131
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 39 QDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
Q D PL+ + + +K + + P GID+N GCPQ A YGA L +
Sbjct: 69 QGDRPLIVQ------FAAKEAQVLADAASLVSPFASGIDLNCGCPQRWAMAEGYGACLIN 122
Query: 99 DWPLLTELGFKTRSHM 114
+ L++++ + R+ +
Sbjct: 123 NPELVSDMVKQVRNQV 138
>gi|221481338|gb|EEE19732.1| dihydrouridine synthase domain-containing protein, putative
[Toxoplasma gondii GT1]
gi|221502060|gb|EEE27806.1| dihydrouridine synthase domain-containing protein, putative
[Toxoplasma gondii VEG]
Length = 394
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 11/105 (10%)
Query: 123 GNDSKNLTEAAKLAEP-HCDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVYS---- 176
G+D K L EA KL E D I++N+GCP V +G +GA L + ++V+
Sbjct: 77 GSDPKTLAEAGKLIEKLGFDEINLNVGCPSNRVVSQGCFGAALMKTPETVRDIVHEIRRH 136
Query: 177 ---PNMVHFVIAEPHCDGNDINIGCPQMVAKRG--HYGAYLQDDW 216
P V I HCD D+ Q V+ G H+ + + W
Sbjct: 137 VQIPVTVKTRIGYDHCDSRDVLRNFVQTVSAGGCRHFIIHARKAW 181
>gi|71279069|ref|YP_267111.1| tRNA-dihydrouridine synthase A [Colwellia psychrerythraea 34H]
gi|71144809|gb|AAZ25282.1| TIM-barrel protein, yjbN family [Colwellia psychrerythraea 34H]
Length = 335
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y +Y + PL+ +LG G+D K +TE AK+AE + D ++IN+
Sbjct: 60 KGDYLSYNDAEHPLVLQLG---------------GSDVKAMTECAKIAEQYGYDEVNINV 104
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ V
Sbjct: 105 GCPSDRVQNGRFGACLMAEPALVAQCV 131
>gi|383848070|ref|XP_003699675.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Megachile rotundata]
Length = 349
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ F + + A ++ P+C+G+D+N GCPQ A + YGA L L+ +LVY
Sbjct: 73 VQFAAKNVYDFLNATEMVAPYCNGVDLNCGCPQRWALKEGYGADLLRKPDLVKDLVYQ 130
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELG 107
++V F+ +KN F+ + P+C+G+D+N GCPQ A + YGA L L+ +L
Sbjct: 71 VIVQFA--AKNVYDFLNATEMVAPYCNGVDLNCGCPQRWALKEGYGADLLRKPDLVKDLV 128
Query: 108 FKTRSHM 114
++ ++ +
Sbjct: 129 YQVKNRI 135
>gi|195997917|ref|XP_002108827.1| hypothetical protein TRIADDRAFT_52208 [Trichoplax adhaerens]
gi|190589603|gb|EDV29625.1| hypothetical protein TRIADDRAFT_52208 [Trichoplax adhaerens]
Length = 309
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRG 90
R + D PL+ + + + N + P+ DG+D+N GCPQ A
Sbjct: 60 RASEFTTVASDRPLIVQ------FAASNAFDLADATELIVPYADGVDLNCGCPQRWAMHE 113
Query: 91 HYGAYLQDDWPLLTELGFKTRSHMCGHSL 119
YGA+L + L+ E+ TRS +C +
Sbjct: 114 GYGAHLINHPELVKEMVRHTRSKICNENF 142
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F +++ +L +A +L P+ DG+D+N GCPQ A YGA+L + L+ +V
Sbjct: 75 VQFAASNAFDLADATELIVPYADGVDLNCGCPQRWAMHEGYGAHLINHPELVKEMV 130
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVH 51
P+ DG+D+N GCPQ A YGA+L + L+ E+V H
Sbjct: 94 PYADGVDLNCGCPQRWAMHEGYGAHLINHPELVKEMVRH 132
>gi|336464378|gb|EGO52618.1| hypothetical protein NEUTE1DRAFT_126097 [Neurospora tetrasperma
FGSC 2508]
Length = 341
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 96 LQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAK 155
+Q+ + ++L T + F ND K L A+ L P+ G+D+N GCPQ A
Sbjct: 13 VQNRFARDSDLTISTNGPQPPTVVQFGANDPKELARASTLVAPYAGGVDLNCGCPQSWAC 72
Query: 156 RGHYGAYLQDDWPLLTNLV 174
GA L + L+ ++V
Sbjct: 73 AETLGAALMEKRELVRDMV 91
>gi|419337329|ref|ZP_13878832.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12D]
gi|378178252|gb|EHX39021.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12D]
Length = 313
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE H D I++N+
Sbjct: 36 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEAHGYDEINLNV 80
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 81 GCPSDRVQNGMFGACLMGNAQLVADCV 107
>gi|146276373|ref|YP_001166532.1| tRNA-dihydrouridine synthase A [Rhodobacter sphaeroides ATCC 17025]
gi|145554614|gb|ABP69227.1| TIM-barrel protein, yjbN family [Rhodobacter sphaeroides ATCC
17025]
Length = 335
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHC-DGIDINIGCPQMVAKRGHYGAYLQ 164
LGF H +L G+D L +A ++A PH D I++N+GCP + G +GA L
Sbjct: 63 LGFSPAEHPV--ALQLGGSDPAELAQAVRVAAPHGHDEINLNVGCPSDRVQSGCFGAVLM 120
Query: 165 DDWPLLTNLVYS 176
+ LL + V +
Sbjct: 121 ERPALLADCVAA 132
>gi|402217097|gb|EJT97179.1| FMN-linked oxidoreductase [Dacryopinax sp. DJM-731 SS1]
Length = 307
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
F + ++L +AA+L P DGID+N GCPQ A H G++L ++ +LV +
Sbjct: 73 FAATEPRHLADAAELISPWVDGIDLNCGCPQPWAYTEHIGSWLLRKPEVVYDLVRA 128
>gi|194426795|ref|ZP_03059348.1| tRNA-dihydrouridine synthase A [Escherichia coli B171]
gi|194415131|gb|EDX31400.1| tRNA-dihydrouridine synthase A [Escherichia coli B171]
gi|195183268|dbj|BAG66809.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H-]
Length = 345
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE H D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEAHGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|291239208|ref|XP_002739522.1| PREDICTED: dihydrouridine synthase 4-like [Saccoglossus
kowalevskii]
Length = 367
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F N++K+ A +L P DG+D+N GCPQ A +GA L L+ ++V
Sbjct: 91 VQFAANNTKDFVTATELIAPFADGVDLNCGCPQRWAMANGFGANLIKHPELVKDMV 146
>gi|72008833|ref|XP_786210.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Strongylocentrotus purpuratus]
Length = 351
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F +++K+L +AA+L + DG+D+N GCPQ A YGA L L+ ++V
Sbjct: 77 VQFAASNAKDLADAAELVARYTDGVDLNCGCPQRWAVAEGYGACLIKHPDLIKDMV 132
>gi|419325896|ref|ZP_13867574.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12B]
gi|378159970|gb|EHX20968.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12B]
Length = 345
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE H D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEAHGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|407720843|ref|YP_006840505.1| tRNA-dihydrouridine synthase A [Sinorhizobium meliloti Rm41]
gi|407319075|emb|CCM67679.1| tRNA-dihydrouridine synthase A [Sinorhizobium meliloti Rm41]
Length = 385
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 11/123 (8%)
Query: 62 FMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGH---- 117
F GP+F P D D + + A++ A L + + + R + GH
Sbjct: 17 FRGPVFAVAPMIDWTDRHY---RFFARQLSSHALLYTEMIVADAILRGDREKLLGHDASE 73
Query: 118 ---SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 173
+L G+D + EAA++AE D I++N+GCP + G +GA L + L+ +
Sbjct: 74 HPVALQLGGSDPAKMAEAARIAEGFGYDEINMNVGCPSDRVQSGTFGACLMQEPALVADC 133
Query: 174 VYS 176
+ +
Sbjct: 134 IAA 136
>gi|223992807|ref|XP_002286087.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977402|gb|EED95728.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 451
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 17 GIDINIGCPQMVAKRGHYGAYLQDDWP 43
D+N+GCPQ +A++G YGA+L D++P
Sbjct: 120 AFDLNLGCPQGIARKGKYGAFLHDEYP 146
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 75 GIDINIGCPQMVAKRGHYGAYLQDDWP 101
D+N+GCPQ +A++G YGA+L D++P
Sbjct: 120 AFDLNLGCPQGIARKGKYGAFLHDEYP 146
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 142 GIDINIGCPQMVAKRGHYGAYLQDDWP 168
D+N+GCPQ +A++G YGA+L D++P
Sbjct: 120 AFDLNLGCPQGIARKGKYGAFLHDEYP 146
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 22/25 (88%)
Query: 193 DINIGCPQMVAKRGHYGAYLQDDWP 217
D+N+GCPQ +A++G YGA+L D++P
Sbjct: 122 DLNLGCPQGIARKGKYGAFLHDEYP 146
>gi|380470167|emb|CCF47870.1| dihydrouridine synthase [Colletotrichum higginsianum]
Length = 392
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 82 CPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCD 141
P +++K + + +D ++L TR + F N L ++ LA P+ +
Sbjct: 53 TPMILSKEFNRNNFARD-----SDLTISTRGVQPPTIVQFGSNSPLELARSSSLAAPYVN 107
Query: 142 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
G+D+N GCPQ A GA L + L+ ++V
Sbjct: 108 GVDLNCGCPQSWACAETLGAALMEKRELVRDMV 140
>gi|449278836|gb|EMC86575.1| tRNA-dihydrouridine synthase 4-like protein [Columba livia]
Length = 315
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F +++ L +AA++ P DGID+N GCPQ A YGA L + L+ ++V
Sbjct: 84 VQFAAKEAQVLCDAARIVCPFADGIDLNCGCPQRWAMSEGYGACLINKPELIRDMV 139
>gi|224541983|ref|ZP_03682522.1| hypothetical protein CATMIT_01156 [Catenibacterium mitsuokai DSM
15897]
gi|224525040|gb|EEF94145.1| TIM-barrel protein, nifR3 family [Catenibacterium mitsuokai DSM
15897]
Length = 325
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
S+ G + + + +AAK E H CD IDIN+GCP + H G+YL L ++V
Sbjct: 69 SMQIFGGEVETMVKAAKFVEEHSDCDIIDINMGCPVNKVLKAHAGSYLMQYPELAYDIVK 128
Query: 176 S 176
+
Sbjct: 129 A 129
>gi|456864580|gb|EMF82979.1| tRNA dihydrouridine synthase A [Leptospira weilii serovar Topaz
str. LT2116]
Length = 339
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
R + +Y ++ PL +LG G+D K L E++K+ E + I++N+
Sbjct: 55 RRRFLSYSPEELPLAIQLG---------------GDDPKALAESSKIGEDYGYSEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G++GA L + + LVYS
Sbjct: 100 GCPSDRVREGNFGACLMETPEKVAELVYS 128
>gi|333914801|ref|YP_004488533.1| yjbN family TIM-barrel protein [Delftia sp. Cs1-4]
gi|333745001|gb|AEF90178.1| TIM-barrel protein, yjbN family [Delftia sp. Cs1-4]
Length = 325
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 93 GAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQ 151
GA L D P L F+ H +L G++ +L +AA+L A+ D I++N GCP
Sbjct: 38 GALLHGDVP--RHLRFEAEEHPV--ALQLGGSEPSDLAQAARLGAQWGYDEINLNCGCPS 93
Query: 152 MVAKRGHYGAYLQDDWPLLTNLVYS 176
+RG +GA L ++ PL+ + V +
Sbjct: 94 ERVQRGAFGACLMNEAPLVADCVKA 118
>gi|393235424|gb|EJD42979.1| FMN-linked oxidoreductase [Auricularia delicata TFB-10046 SS5]
Length = 344
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
F +D + +A +L P+ DGID+N GCPQ A H G++L + + +LV +
Sbjct: 103 FAASDERTFGDACELIRPYVDGIDLNCGCPQPWAYAEHVGSWLLREPDRVRDLVRA 158
>gi|212555091|gb|ACJ27545.1| TIM-barrel protein, yjbN family [Shewanella piezotolerans WP3]
Length = 370
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 75/198 (37%), Gaps = 36/198 (18%)
Query: 34 YGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYG 93
+G Y+Q + W ++ F L AE + G ++ RG Y
Sbjct: 40 FGNYMQTQLNRTFSIAPMLDWTDRHYRYF-ARLMSAEVLLYTEMVTTGA--IIHGRGDYL 96
Query: 94 AYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQM 152
AY Q++ P+ +LG G+++ +L AKLA E D I++N+GCP
Sbjct: 97 AYNQEEHPVALQLG---------------GSNAVDLATCAKLAAERGYDEINLNVGCPSD 141
Query: 153 VAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYL 212
+ G +GA L + L+ V + V + P V R G
Sbjct: 142 RVQNGRFGACLMAEPTLVAECVDAMKQV---------------VDIPVTVKTR--IGIDE 184
Query: 213 QDDWPLLTELGKMAMLVG 230
QD + LTE VG
Sbjct: 185 QDSYEFLTEFIDTVKAVG 202
>gi|154336333|ref|XP_001564402.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061437|emb|CAM38463.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 512
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ + EAA L P+CD ID+N GCPQ A + GA L D + ++V S
Sbjct: 174 VQLAAKSGTDAAEAALLLRPYCDAIDLNCGCPQRWAMKDGIGAVLLDQPERVADMVRS 231
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 47 ELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
LVV + +K+G + P+CD ID+N GCPQ A + GA L D + ++
Sbjct: 171 RLVVQLA--AKSGTDAAEAALLLRPYCDAIDLNCGCPQRWAMKDGIGAVLLDQPERVADM 228
Query: 107 GFKTRSHM 114
R+ M
Sbjct: 229 VRSIRNAM 236
>gi|160899058|ref|YP_001564640.1| tRNA-dihydrouridine synthase A [Delftia acidovorans SPH-1]
gi|160364642|gb|ABX36255.1| TIM-barrel protein, yjbN family [Delftia acidovorans SPH-1]
Length = 336
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 93 GAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQ 151
GA L D P L F+ H +L G++ +L +AA+L A+ D I++N GCP
Sbjct: 49 GALLHGDVP--RHLRFEAEEHPV--ALQLGGSEPSDLAQAARLGAQWGYDEINLNCGCPS 104
Query: 152 MVAKRGHYGAYLQDDWPLLTNLVYS 176
+RG +GA L ++ PL+ + V +
Sbjct: 105 ERVQRGAFGACLMNEAPLVADCVKA 129
>gi|400406132|ref|YP_006588880.1| tRNA dihydrouridine synthase A [secondary endosymbiont of
Heteropsylla cubana]
gi|400364385|gb|AFP85452.1| tRNA dihydrouridine synthase A [secondary endosymbiont of
Heteropsylla cubana]
Length = 344
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
SL + K L AKLAE D I++N+GCP K+G +GAYL ++ + N V
Sbjct: 82 SLQVGSREPKILARCAKLAEERGYDEINLNVGCPSNRMKKGFFGAYLMNEKEQVANCV 139
>gi|253689857|ref|YP_003019047.1| TIM-barrel protein, yjbN family [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756435|gb|ACT14511.1| TIM-barrel protein, yjbN family [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 340
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ PL +LG G+D + L + AKLAE D +++N+
Sbjct: 64 KGDYLAYSEEEHPLALQLG---------------GSDPQALAQCAKLAEQRGYDEVNLNV 108
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + +
Sbjct: 109 GCPSDRVQNGRFGACLMGEASLVADCI 135
>gi|400601446|gb|EJP69089.1| dihydrouridine synthase [Beauveria bassiana ARSEF 2860]
Length = 393
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Query: 83 PQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDG 142
P ++AK + ++ +D ++L T L F N + L A+ LA P G
Sbjct: 60 PMILAKEFNRSSFARD-----SDLTIGTNGPQPVTILQFGANSATELARASSLAMPSVAG 114
Query: 143 IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM 179
+D+N GCPQ A GA L + L+ ++V +
Sbjct: 115 VDLNCGCPQSWACAETLGAALMNRRELVRDMVVETRV 151
>gi|260221113|emb|CBA29353.1| tRNA-dihydrouridine synthase A [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 370
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 93 GAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQ 151
GA + D P L F H +L G++ +L AAKL + D I+IN GCP
Sbjct: 82 GALIHGDVP--RHLRFNVEEHPV--ALQLGGSEPADLARAAKLGQDWGYDEININCGCPS 137
Query: 152 MVAKRGHYGAYLQDDWPLLTNLVYS 176
+RG +GA L ++ PL+ + V S
Sbjct: 138 ERVQRGAFGACLMNEAPLVADCVKS 162
>gi|387890930|ref|YP_006321228.1| tRNA-dihydrouridine synthase A [Escherichia blattae DSM 4481]
gi|414595786|ref|ZP_11445397.1| tRNA-dihydrouridine synthase A [Escherichia blattae NBRC 105725]
gi|386925763|gb|AFJ48717.1| tRNA-dihydrouridine synthase A [Escherichia blattae DSM 4481]
gi|403193257|dbj|GAB83049.1| tRNA-dihydrouridine synthase A [Escherichia blattae NBRC 105725]
Length = 332
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ PL +LG G+D + L + A+LAE D I++N+
Sbjct: 55 KGDYLAYNEEEHPLALQLG---------------GSDPRALAQCARLAEERGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGRFGACLMGEADLVADCV 126
>gi|346473567|gb|AEO36628.1| hypothetical protein [Amblyomma maculatum]
Length = 358
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F N++ +L AA+L + DG+D+N GCPQ A YGA+L L+ ++V
Sbjct: 109 VQFAANNAIDLANAAELVYRYADGVDLNCGCPQRWAMAEGYGAHLLAHPELVRDMV 164
>gi|161505294|ref|YP_001572406.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:- str. RSK2980]
gi|160866641|gb|ABX23264.1| hypothetical protein SARI_03435 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 345
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ PL +LG G+D LT AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPLALQLG---------------GSDPAQLTHCAKLAEVRGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|428201333|ref|YP_007079922.1| tRNA dihydrouridine synthase A [Pleurocapsa sp. PCC 7327]
gi|427978765|gb|AFY76365.1| tRNA dihydrouridine synthase A [Pleurocapsa sp. PCC 7327]
Length = 333
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYL 163
SL G++ K+LTE A++AE D I++N+GCP K G++GA L
Sbjct: 71 SLQLGGDNPKDLTECARIAEDRGYDEINLNVGCPSSRVKEGNFGACL 117
>gi|127511470|ref|YP_001092667.1| tRNA-dihydrouridine synthase A [Shewanella loihica PV-4]
gi|126636765|gb|ABO22408.1| TIM-barrel protein, yjbN family [Shewanella loihica PV-4]
Length = 329
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 33/135 (24%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINI 147
+G Y AY Q++ PL +LG G++ ++L + AKLA E D +++N+
Sbjct: 54 KGDYLAYNQEEHPLALQLG---------------GSNPEDLAKCAKLAAERGYDEVNLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGH 207
GCP + G +GA L + L+ V + N V + P V R
Sbjct: 99 GCPSDRVQNGRFGACLMAEPDLVAQCVAAMNEV---------------VDIPVTVKTR-- 141
Query: 208 YGAYLQDDWPLLTEL 222
G QD + LTE
Sbjct: 142 IGIDEQDSYEFLTEF 156
>gi|327273572|ref|XP_003221554.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Anolis
carolinensis]
Length = 325
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL-------QDDWPLLT 171
+ F +++ L +AA + P DGID+N GCPQ A YGA L QD L+
Sbjct: 93 VQFAAKEAQVLADAACIVSPFADGIDLNCGCPQRWAMAEGYGACLINKPELVQDMVKLVK 152
Query: 172 NLVYSP 177
N V +P
Sbjct: 153 NQVENP 158
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 39 QDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
Q D PL+ + + +K + I P DGID+N GCPQ A YGA L +
Sbjct: 86 QGDRPLIVQ------FAAKEAQVLADAACIVSPFADGIDLNCGCPQRWAMAEGYGACLIN 139
Query: 99 DWPLLTEL 106
L+ ++
Sbjct: 140 KPELVQDM 147
>gi|212710291|ref|ZP_03318419.1| hypothetical protein PROVALCAL_01350 [Providencia alcalifaciens DSM
30120]
gi|422020548|ref|ZP_16367086.1| tRNA-dihydrouridine synthase A [Providencia alcalifaciens Dmel2]
gi|212687098|gb|EEB46626.1| hypothetical protein PROVALCAL_01350 [Providencia alcalifaciens DSM
30120]
gi|414101185|gb|EKT62786.1| tRNA-dihydrouridine synthase A [Providencia alcalifaciens Dmel2]
Length = 341
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 64 KGDYLAYSEEEHPVSLQLG---------------GSDPVALAQCAKLAEERGYDEINLNV 108
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L D L+ + V
Sbjct: 109 GCPSDRVQNGRFGACLMADAQLVADCV 135
>gi|116252712|ref|YP_768550.1| tRNA-dihydrouridine synthase A [Rhizobium leguminosarum bv. viciae
3841]
gi|115257360|emb|CAK08455.1| putative tRNA-dihydrouridine synthase A [Rhizobium leguminosarum
bv. viciae 3841]
Length = 333
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Query: 111 RSHMCGH-------SLMFCGNDSKNLTEAAKLAEPHC-DGIDINIGCPQMVAKRGHYGAY 162
R + GH +L G+D L EA K+AEP+ D I++N+GCP + G +GA
Sbjct: 49 RDRLLGHDAAEHPLALQLGGSDPAKLAEAVKIAEPYFYDEINLNVGCPSDRVQSGTFGAC 108
Query: 163 LQDDWPLLTNLVYSPNMVHFVIAEPHC----DGNDINIGCPQMVAKRGHYGA 210
L ++ + + V V C D + P+++ + GA
Sbjct: 109 LMLTPEMVAECIAAMKRVATVPVTVKCRIGVDEQEPEQALPELITRVLDAGA 160
>gi|46108752|ref|XP_381434.1| hypothetical protein FG01258.1 [Gibberella zeae PH-1]
Length = 362
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 8/109 (7%)
Query: 67 FIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGFKTRSHMCGHSLMFCGND 125
F H G+D+ P ++AK + ++ +D DW F T + F N
Sbjct: 40 FRQTVHKYGVDL-CWSPMILAKEFNRSSFARDSDW------SFSTEPKQPPTIVQFGANV 92
Query: 126 SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
L A+ L P G+D+N GCPQ A GA L + L+ ++V
Sbjct: 93 PLELARASALVAPSSQGVDLNCGCPQSWACAETLGAALMNHRELVRDMV 141
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQD-DWPLLTE-----LVVHFSWVSKNGPLFMGPL- 66
H G+D+ P ++AK + ++ +D DW TE +V F N PL +
Sbjct: 45 HKYGVDL-CWSPMILAKEFNRSSFARDSDWSFSTEPKQPPTIVQFG---ANVPLELARAS 100
Query: 67 FIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCG 116
+ P G+D+N GCPQ A GA L + L+ ++ +TR +
Sbjct: 101 ALVAPSSQGVDLNCGCPQSWACAETLGAALMNHRELVRDMVVETRQRLAS 150
>gi|229366234|gb|ACQ58097.1| tRNA-dihydrouridine synthase 4-like PP35 [Anoplopoma fimbria]
Length = 318
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F D++ L +AA + P DG+D+N GCPQ A +GA L + L+ ++V
Sbjct: 81 VQFAAPDAQTLADAACVVAPFSDGVDLNCGCPQRWAMSAGFGACLINKPELVKDMV 136
>gi|159116295|ref|XP_001708369.1| Embryo-related protein [Giardia lamblia ATCC 50803]
gi|157436480|gb|EDO80695.1| Embryo-related protein [Giardia lamblia ATCC 50803]
Length = 406
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 119 LMFCGNDSKNLTEAAKL-----AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 173
L CGN+ AA+L +DIN+GCP A YG Y+ +WPL+ +
Sbjct: 117 LQLCGNNPSTFRAAAELLHDSPIASQLVALDINLGCPASCASSKGYGFYVAQNWPLVHQI 176
Query: 174 V 174
+
Sbjct: 177 I 177
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 17 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS 53
+DIN+GCP A YG Y+ +WPL+ +++ S
Sbjct: 145 ALDINLGCPASCASSKGYGFYVAQNWPLVHQIISETS 181
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 75 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRS 112
+DIN+GCP A YG Y+ +WPL+ ++ +T S
Sbjct: 145 ALDINLGCPASCASSKGYGFYVAQNWPLVHQIISETSS 182
>gi|226326586|ref|ZP_03802104.1| hypothetical protein PROPEN_00436 [Proteus penneri ATCC 35198]
gi|225205011|gb|EEG87365.1| tRNA dihydrouridine synthase A [Proteus penneri ATCC 35198]
Length = 344
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y Y +++ P+ +LG G+D + L + AKLA+ D I++N+
Sbjct: 68 KGDYLKYSEEEHPVSLQLG---------------GSDPQALAQCAKLAQERGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L D L+ N V
Sbjct: 113 GCPSDRVQNGRFGACLMGDAQLVANCV 139
>gi|336267306|ref|XP_003348419.1| hypothetical protein SMAC_02915 [Sordaria macrospora k-hell]
gi|380092073|emb|CCC10341.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 336
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 85 MVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGID 144
++AK + + +D ++L T H + F N + L A+ L P+ G+D
Sbjct: 2 ILAKEFNRNRFARD-----SDLTISTNGHQPPTVVQFGANVPQELARASTLVAPYAGGVD 56
Query: 145 INIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+N GCPQ A GA L + L+ ++V
Sbjct: 57 LNCGCPQSWACAETLGAALMEKRELVRDMV 86
>gi|399037112|ref|ZP_10734022.1| putative TIM-barrel protein, nifR3 family, partial [Rhizobium sp.
CF122]
gi|398065399|gb|EJL57037.1| putative TIM-barrel protein, nifR3 family, partial [Rhizobium sp.
CF122]
Length = 234
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 82 CPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-C 140
+MVA R + + W L GF+ H + G ++ + EAAK+A H
Sbjct: 33 VTEMVASRELVNST-AESWARLESAGFEP------HMVQLAGREAHWMAEAAKIAADHGA 85
Query: 141 DGIDINIGCPQMVAKRGHYGAYLQDD 166
D IDIN+GCP G+ G+ L D
Sbjct: 86 DIIDINMGCPAKKVIGGYSGSALMRD 111
>gi|327398323|ref|YP_004339192.1| dihydrouridine synthase DuS [Hippea maritima DSM 10411]
gi|327180952|gb|AEA33133.1| dihydrouridine synthase DuS [Hippea maritima DSM 10411]
Length = 320
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 117 HSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ + G+D + AA+ EP CD IDIN GCP R G+YL + L ++ +
Sbjct: 67 YCIQLFGSDERLFLYAAQFVEPFCDCIDINAGCPAPKVIRAKAGSYLLKEPKKLISITQT 126
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%)
Query: 61 LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHM 114
LF+ EP CD IDIN GCP R G+YL + L + R H+
Sbjct: 78 LFLYAAQFVEPFCDCIDINAGCPAPKVIRAKAGSYLLKEPKKLISITQTLRKHL 131
>gi|225717662|gb|ACO14677.1| tRNA-dihydrouridine synthase 4-like [Caligus clemensi]
Length = 308
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ F + AA+L PH +G+D+N GCPQ A R GA L ++++V S
Sbjct: 73 VQFASKSVDDFVSAAQLVAPHAEGVDLNCGCPQGWAIREGIGAALLQRPEFISDVVRS 130
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELG 107
L+V F+ SK+ F+ + PH +G+D+N GCPQ A R GA L ++++
Sbjct: 71 LIVQFA--SKSVDDFVSAAQLVAPHAEGVDLNCGCPQGWAIREGIGAALLQRPEFISDVV 128
Query: 108 FKTRSHMCGHSL 119
T++ HSL
Sbjct: 129 RSTKNR-TQHSL 139
>gi|124021729|ref|YP_001016036.1| tRNA-dihydrouridine synthase A [Prochlorococcus marinus str. MIT
9303]
gi|123962015|gb|ABM76771.1| tRNA-dihydrouridine synthase [Prochlorococcus marinus str. MIT
9303]
Length = 334
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 118 SLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYL 163
SL G+D K L EAA+LA+ D I++N+GCP AK G++GA L
Sbjct: 71 SLQVGGDDPKMLAEAARLADAWGYDEINLNVGCPSSRAKAGNFGACL 117
>gi|409437310|ref|ZP_11264429.1| tRNA-dihydrouridine synthase B [Rhizobium mesoamericanum STM3625]
gi|408751034|emb|CCM75585.1| tRNA-dihydrouridine synthase B [Rhizobium mesoamericanum STM3625]
Length = 333
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 14/136 (10%)
Query: 82 CPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-C 140
+MVA R + + W L GF+ H + G ++ + EAAK+A H
Sbjct: 47 VTEMVASRELVNS-TAESWARLESAGFEP------HMVQLAGREAHWMAEAAKIAADHGA 99
Query: 141 DGIDINIGCPQMVAKRGHYGAYLQDD----WPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196
D IDIN+GCP G+ G+ L D L+ V + ++ + D N IN
Sbjct: 100 DIIDINMGCPAKKVIGGYSGSALMRDPDHALSLIEATVKAVSVPVTLKMRLGWDENSIN- 158
Query: 197 GCPQMVAKRGHYGAYL 212
PQ+ + G L
Sbjct: 159 -APQIARRAQEAGIQL 173
>gi|313235191|emb|CBY25064.1| unnamed protein product [Oikopleura dioica]
Length = 286
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F N ++ + A++ HC+GID+N GCPQ +YG L LL ++V
Sbjct: 53 VQFAANKGEDFAKVAQMLYGHCEGIDLNCGCPQRWVNALNYGDILMKQPELLADIV 108
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELG 107
LVV F+ + G F + HC+GID+N GCPQ +YG L LL ++
Sbjct: 51 LVVQFA--ANKGEDFAKVAQMLYGHCEGIDLNCGCPQRWVNALNYGDILMKQPELLADIV 108
Query: 108 FKTR 111
+ R
Sbjct: 109 LQAR 112
>gi|170057436|ref|XP_001864482.1| tRNA-dihydrouridine synthase [Culex quinquefasciatus]
gi|167876880|gb|EDS40263.1| tRNA-dihydrouridine synthase [Culex quinquefasciatus]
Length = 378
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ F N++ + AA++ P+ DG+D+N GCPQ A + YG+ L L+ +++ +
Sbjct: 60 VQFAANNTIDFLSAAEMVYPYSDGVDLNCGCPQRWAMQDGYGSALLKTPELIADMLAT 117
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 39 QDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
+DD P++ + + + N F+ + P+ DG+D+N GCPQ A + YG+ L
Sbjct: 53 KDDTPMIVQ------FAANNTIDFLSAAEMVYPYSDGVDLNCGCPQRWAMQDGYGSALLK 106
Query: 99 DWPLLTELGFKTRSHM-CGHSL 119
L+ ++ R ++ C S+
Sbjct: 107 TPELIADMLATVRRNLPCSFSV 128
>gi|424870485|ref|ZP_18294147.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. viciae WSM1455]
gi|393166186|gb|EJC66233.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. viciae WSM1455]
Length = 338
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 98 DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKR 156
+ W L+ GF+ H + G ++ + EAAK+A H D IDIN+GCP
Sbjct: 69 ESWSRLSAAGFRP------HMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIG 122
Query: 157 GHYGAYLQDD 166
G+ G+ L D
Sbjct: 123 GYSGSALMRD 132
>gi|116252011|ref|YP_767849.1| tRNA-dihydrouridine synthase (nitrogen regulation protein)
[Rhizobium leguminosarum bv. viciae 3841]
gi|115256659|emb|CAK07747.1| putative tRNA-dihydrouridine synthase (nitrogen regulation protein)
[Rhizobium leguminosarum bv. viciae 3841]
Length = 338
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 98 DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKR 156
+ W L+ GF+ H + G ++ + EAAK+A H D IDIN+GCP
Sbjct: 69 ESWSRLSAAGFRP------HMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIG 122
Query: 157 GHYGAYLQDD 166
G+ G+ L D
Sbjct: 123 GYSGSALMRD 132
>gi|241204538|ref|YP_002975634.1| nifR3 family TIM-barrel protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240858428|gb|ACS56095.1| TIM-barrel protein, nifR3 family [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 338
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 98 DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKR 156
+ W L+ GF+ H + G ++ + EAAK+A H D IDIN+GCP
Sbjct: 69 ESWSRLSAAGFRP------HMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIG 122
Query: 157 GHYGAYLQDD 166
G+ G+ L D
Sbjct: 123 GYSGSALMRD 132
>gi|408400309|gb|EKJ79392.1| hypothetical protein FPSE_00434 [Fusarium pseudograminearum CS3096]
Length = 388
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 67 FIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGFKTRSHMCGHSLMFCGND 125
F H G+D+ P ++AK + ++ +D DW F T + + F N
Sbjct: 40 FRQTVHKYGVDL-CWSPMILAKEFNRSSFARDSDW------TFSTEPNQPPTIVQFGANV 92
Query: 126 SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
L A+ L P G+D+N GCPQ A GA L + L+ ++V
Sbjct: 93 PLELARASALVAPSSQGVDLNCGCPQSWACAETLGAALMNHRELVRDIV 141
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQD-DWPLLTE-----LVVHFSWVSKNGPLFMGPL- 66
H G+D+ P ++AK + ++ +D DW TE +V F N PL +
Sbjct: 45 HKYGVDL-CWSPMILAKEFNRSSFARDSDWTFSTEPNQPPTIVQFG---ANVPLELARAS 100
Query: 67 FIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCG 116
+ P G+D+N GCPQ A GA L + L+ ++ +TR +
Sbjct: 101 ALVAPSSQGVDLNCGCPQSWACAETLGAALMNHRELVRDIVVETRQRLTS 150
>gi|424881450|ref|ZP_18305082.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. trifolii WU95]
gi|392517813|gb|EIW42545.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. trifolii WU95]
Length = 338
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 98 DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKR 156
+ W L+ GF+ H + G ++ + EAAK+A H D IDIN+GCP
Sbjct: 69 ESWSRLSAAGFRP------HMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIG 122
Query: 157 GHYGAYLQDD 166
G+ G+ L D
Sbjct: 123 GYSGSALMRD 132
>gi|340923967|gb|EGS18870.1| hypothetical protein CTHT_0054810 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 317
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ F N + L A+ L P C+GID+N GCPQ A GA L + L+ ++V +
Sbjct: 86 VQFGANVPQELARASSLVVPFCNGIDLNCGCPQSWACAETLGAALMEKRELVRDMVIA 143
>gi|221054640|ref|XP_002258459.1| dihydrouridine synthase [Plasmodium knowlesi strain H]
gi|193808528|emb|CAQ39231.1| dihydrouridine synthase, putative [Plasmodium knowlesi strain H]
Length = 508
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 123 GNDSKNLTEAAKLAEPH-CDGIDINIGCPQM-VAKRGHYGAYLQDDWPLLTNLVY 175
G+D +L EAA L E D I++N+GCP VA +G +GAYL + N+VY
Sbjct: 198 GSDPTSLAEAAVLVEQAGYDEINLNVGCPSTKVANKGAFGAYLMKKPEHVRNIVY 252
>gi|170572143|ref|XP_001891998.1| tRNA-dihydrouridine synthase 4 [Brugia malayi]
gi|158603133|gb|EDP39179.1| tRNA-dihydrouridine synthase 4, putative [Brugia malayi]
Length = 321
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F N+ + + AA +C GID+N GCPQ R YG+ L D + ++V
Sbjct: 89 VQFASNEPEEFSTAAMFISRYCRGIDLNCGCPQRDVMREGYGSSLLTDPVRIADIV 144
>gi|85117655|ref|XP_965295.1| hypothetical protein NCU03195 [Neurospora crassa OR74A]
gi|28927102|gb|EAA36059.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 341
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%)
Query: 96 LQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAK 155
+Q+ + ++L T + F ND + L A+ L P+ G+D+N GCPQ A
Sbjct: 13 VQNRFARDSDLTISTNGPQPPTVVQFGANDPQELARASTLVAPYAGGVDLNCGCPQSWAC 72
Query: 156 RGHYGAYLQDDWPLLTNLV 174
GA L + L+ ++V
Sbjct: 73 AETLGAALMEKRELVRDMV 91
>gi|188025481|ref|ZP_02958806.2| hypothetical protein PROSTU_00565 [Providencia stuartii ATCC 25827]
gi|188023335|gb|EDU61375.1| tRNA dihydrouridine synthase A [Providencia stuartii ATCC 25827]
Length = 336
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y A+ +++ P+ +LG G+D + L + AKLA+ D I++N+
Sbjct: 59 KGDYLAFSEEEQPVALQLG---------------GSDPEALAQCAKLAQERGYDEINLNV 103
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L D L+ + V
Sbjct: 104 GCPSDRVQNGRFGACLMADAQLVADCV 130
>gi|157875645|ref|XP_001686207.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68129281|emb|CAJ07821.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 493
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 56 SKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHM 114
+K+GP + P+CDGID+N GCPQ A + GA L D + ++ R+ M
Sbjct: 159 AKSGPAAAQAALLLRPYCDGIDLNCGCPQRWAMKEGIGAALLDQPERVADMVRSIRNAM 217
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 137 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196
P+CDGID+N GCPQ A + GA L D + ++V S I DG+
Sbjct: 173 RPYCDGIDLNCGCPQRWAMKEGIGAALLDQPERVADMVRS-------IRNAMPDGST--- 222
Query: 197 GCPQMVAKRGHYGAYLQDDWPLLTELGKM 225
P +V G Y + P L + KM
Sbjct: 223 -APMIVGNGGEYSSCTSAVPPFLPCVVKM 250
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+CDGID+N GCPQ A + GA L D + ++V
Sbjct: 173 RPYCDGIDLNCGCPQRWAMKEGIGAALLDQPERVADMV 210
>gi|428182359|gb|EKX51220.1| hypothetical protein GUITHDRAFT_66170 [Guillardia theta CCMP2712]
Length = 352
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%)
Query: 105 ELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ 164
++ F T H + F +D+ L++AA L DG+DIN GCPQ A + GA L
Sbjct: 49 DIEFTTNHHDRPVIVQFAAHDAMELSKAAALLAGKVDGVDINCGCPQRWAIKEGVGAALL 108
Query: 165 DDWPLLTNLV 174
L+ ++V
Sbjct: 109 KKPELVRDMV 118
>gi|386742972|ref|YP_006216151.1| tRNA-dihydrouridine synthase A [Providencia stuartii MRSN 2154]
gi|384479665|gb|AFH93460.1| tRNA-dihydrouridine synthase A [Providencia stuartii MRSN 2154]
Length = 327
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y A+ +++ P+ +LG G+D + L + AKLA+ D I++N+
Sbjct: 50 KGDYLAFSEEEQPVALQLG---------------GSDPEALAQCAKLAQERGYDEINLNV 94
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L D L+ + V
Sbjct: 95 GCPSDRVQNGRFGACLMADAQLVADCV 121
>gi|87199943|ref|YP_497200.1| dihydrouridine synthase TIM-barrel protein nifR3 [Novosphingobium
aromaticivorans DSM 12444]
gi|87135624|gb|ABD26366.1| tRNA-U20-dihydrouridine synthase [Novosphingobium aromaticivorans
DSM 12444]
Length = 351
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
S+ G + + + EAAKL+E I DIN+GCP G G+ L D PL T L+ +
Sbjct: 80 SMQLVGCEPEQMAEAAKLSEDKGAAIIDINMGCPVRKVVNGDAGSALMRDIPLATRLIEA 139
>gi|310790879|gb|EFQ26412.1| dihydrouridine synthase [Glomerella graminicola M1.001]
Length = 344
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 101 PLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 160
P++ F R+ S+ F + L ++ LA P+ +G+D+N GCPQ A G
Sbjct: 21 PMILSKEFN-RNKFARDSVQFGSSSPLELARSSSLAAPYVNGVDLNCGCPQSWACAETLG 79
Query: 161 AYLQDDWPLLTNLVYS 176
A L + L+ +V S
Sbjct: 80 AALMEKRELVREMVVS 95
>gi|33862288|ref|NP_893848.1| tRNA-dihydrouridine synthase A [Prochlorococcus marinus str. MIT
9313]
gi|33640401|emb|CAE20190.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9313]
Length = 339
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 118 SLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYL 163
SL G+D K L EAA+LA+ D I++N+GCP AK G++GA L
Sbjct: 76 SLQVGGDDPKILAEAARLADAWGYDEINLNVGCPSSRAKAGNFGACL 122
>gi|320168879|gb|EFW45778.1| tRNA-dihydrouridine synthase 4-like protein [Capsaspora owczarzaki
ATCC 30864]
Length = 432
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 17/94 (18%)
Query: 85 MVAKRGHYGAYLQDDW--PLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDG 142
+++KRG + +++ P++ + K H+ M C AA++ P+ DG
Sbjct: 121 ILSKRGRDNDFSTNEYDHPVIVQFAAK-------HTEMLC--------TAAEMVAPYVDG 165
Query: 143 IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
IDIN GCPQ A YG+ L L+ ++V +
Sbjct: 166 IDINCGCPQRWAMSEGYGSALLRKPQLIYDMVRA 199
>gi|421082495|ref|ZP_15543378.1| TRNA-dihydrouridine synthase [Pectobacterium wasabiae CFBP 3304]
gi|401702732|gb|EJS92972.1| TRNA-dihydrouridine synthase [Pectobacterium wasabiae CFBP 3304]
Length = 340
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ PL +LG G+D L + AKLAE D +++N+
Sbjct: 64 KGDYLAYSEEEHPLALQLG---------------GSDPTALAQCAKLAEQRGYDEVNLNV 108
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G +GA L + L+ + + +
Sbjct: 109 GCPSDRVQNGRFGACLMGEAALVADCIKA 137
>gi|313217157|emb|CBY38320.1| unnamed protein product [Oikopleura dioica]
Length = 163
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F N ++ + A++ HC+GID+N GCPQ +YG L LL ++V
Sbjct: 53 VQFAANKGEDFAKVAQMLYGHCEGIDLNCGCPQRWVNALNYGDILMKQPELLADIV 108
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELG 107
LVV F+ + G F + HC+GID+N GCPQ +YG L LL ++
Sbjct: 51 LVVQFA--ANKGEDFAKVAQMLYGHCEGIDLNCGCPQRWVNALNYGDILMKQPELLADIV 108
Query: 108 FKTR 111
+ R
Sbjct: 109 LQAR 112
>gi|242238196|ref|YP_002986377.1| yjbN family TIM-barrel protein [Dickeya dadantii Ech703]
gi|242130253|gb|ACS84555.1| TIM-barrel protein, yjbN family [Dickeya dadantii Ech703]
Length = 335
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 23/126 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
RG Y AY ++ PL +LG G+D + L + A++AE D I++N+
Sbjct: 59 RGDYLAYNDEEHPLALQLG---------------GSDPQALAQCAEIAEQRGYDEINLNV 103
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS-------PNMVHFVIAEPHCDGNDINIGCPQ 200
GCP + G +GA L + L+ + V + P V I D D +
Sbjct: 104 GCPSDRVQNGRFGACLMAEAELVADCVDAMRGRVRLPVTVKTRIGIDDQDSYDFLCAFIR 163
Query: 201 MVAKRG 206
VA+RG
Sbjct: 164 TVAERG 169
>gi|218294737|ref|ZP_03495591.1| dihydrouridine synthase DuS [Thermus aquaticus Y51MC23]
gi|218244645|gb|EED11169.1| dihydrouridine synthase DuS [Thermus aquaticus Y51MC23]
Length = 342
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 164
LGF+ +L G+D ++L EAA++ E D +++N+GCP A+ G YGA L
Sbjct: 51 LGFRPEERPL--ALQLAGHDPESLAEAARIGEAFGYDEVNLNLGCPSERAQEGGYGACLL 108
Query: 165 DD 166
D
Sbjct: 109 RD 110
>gi|328868434|gb|EGG16812.1| tRNA-dihydrouridine synthase 4-like protein [Dictyostelium
fasciculatum]
Length = 346
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 83 PQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDG 142
P ++A+ + + +D F T + F ND + L+ A + HC G
Sbjct: 86 PMLLAESFNRSEFARDS-------DFTTNQFDNSLIVQFAANDGEELSAAVEKVANHCQG 138
Query: 143 IDINIGCPQMVAKRGHYGAYL 163
+DIN GCPQ R + GA L
Sbjct: 139 VDINCGCPQKWIIRENMGAGL 159
>gi|424882136|ref|ZP_18305768.1| tRNA dihydrouridine synthase A [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392518499|gb|EIW43231.1| tRNA dihydrouridine synthase A [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 333
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 111 RSHMCGH-------SLMFCGNDSKNLTEAAKLAEPHC-DGIDINIGCPQMVAKRGHYGAY 162
R + GH +L G+D L EA K+AEP+ D I++N+GCP + G +GA
Sbjct: 49 RDRLLGHDCAEHPLALQLGGSDPAKLAEAVKIAEPYLYDEINLNVGCPSDRVQSGTFGAC 108
Query: 163 L 163
L
Sbjct: 109 L 109
>gi|241205218|ref|YP_002976314.1| tRNA-dihydrouridine synthase A [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240859108|gb|ACS56775.1| TIM-barrel protein, yjbN family [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 333
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 111 RSHMCGH-------SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAY 162
R + GH +L G+D LTEA K+A+P+ D I++N+GCP + G +GA
Sbjct: 49 RDRLLGHDAAEHPLALQLGGSDPAKLTEAVKIAQPYGYDEINLNVGCPSDRVQSGTFGAC 108
Query: 163 L 163
L
Sbjct: 109 L 109
>gi|217976714|ref|YP_002360861.1| nifR3 family TIM-barrel protein [Methylocella silvestris BL2]
gi|217502090|gb|ACK49499.1| TIM-barrel protein, nifR3 family [Methylocella silvestris BL2]
Length = 327
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 117 HSLMFCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
H + G D++++ AA++A I DIN+GCP G+ G++L D PL +L+
Sbjct: 66 HVVQIAGCDAQSMARAARIAADSGAAILDINMGCPAKKVINGYSGSHLMRDLPLALDLIR 125
Query: 176 S 176
+
Sbjct: 126 A 126
>gi|220932369|ref|YP_002509277.1| methylamine-specific methylcobalamin coenzyme M methyltransferase
[Halothermothrix orenii H 168]
gi|219993679|gb|ACL70282.1| methylamine-specific methylcobalamin coenzyme M methyltransferase
[Halothermothrix orenii H 168]
Length = 448
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 20/132 (15%)
Query: 75 GIDINIGCPQMVAKRG--HYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEA 132
G+D+ MV++ H+ +L + TEL R S CGN SKN+ E
Sbjct: 185 GMDVIAAVDPMVSQISPEHFKEFLNRSY---TELFAFIRDEGAFSSFFVCGNASKNIEEM 241
Query: 133 AKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT---------NLVYSPNMVHFV 183
L EP +D N+ P+ +G + + PL T N+ Y+ ++++ V
Sbjct: 242 C-LTEPDSISVDENVSLPEAKEITDKHGIVIGGNIPLTTVMLHGNQQDNMKYTVDLLNSV 300
Query: 184 -----IAEPHCD 190
I P CD
Sbjct: 301 SRDNLIISPGCD 312
>gi|334142006|ref|YP_004535213.1| dihydrouridine synthase TIM-barrel protein nifR3 [Novosphingobium
sp. PP1Y]
gi|333940037|emb|CCA93395.1| dihydrouridine synthase TIM-barrel protein nifR3 [Novosphingobium
sp. PP1Y]
Length = 338
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
S+ G + + + EAAKL E I DIN+GCP G G+ L D PL T L+ +
Sbjct: 80 SMQLVGCEPEQMAEAAKLVEDRGAAIIDINMGCPVRKVVNGDAGSALMRDVPLATRLIEA 139
>gi|219128482|ref|XP_002184441.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404242|gb|EEC44190.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 323
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 41
+T+ DG D+N GCPQ +A++G YGA+L ++
Sbjct: 87 QTDGKVDGFDLNCGCPQGIARKGRYGAFLMEE 118
Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 119 LMFCGNDSKNLTEAAKL----AEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 166
+ GN + AA+ + DG D+N GCPQ +A++G YGA+L ++
Sbjct: 67 VQLAGNSVDMVLRAAQYVLDQTDGKVDGFDLNCGCPQGIARKGRYGAFLMEE 118
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 73 CDGIDINIGCPQMVAKRGHYGAYLQDD 99
DG D+N GCPQ +A++G YGA+L ++
Sbjct: 92 VDGFDLNCGCPQGIARKGRYGAFLMEE 118
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 189 CDGNDINIGCPQMVAKRGHYGAYLQDD 215
DG D+N GCPQ +A++G YGA+L ++
Sbjct: 92 VDGFDLNCGCPQGIARKGRYGAFLMEE 118
>gi|359401662|ref|ZP_09194629.1| dihydrouridine synthase TIM-barrel protein nifR3 [Novosphingobium
pentaromativorans US6-1]
gi|357597002|gb|EHJ58753.1| dihydrouridine synthase TIM-barrel protein nifR3 [Novosphingobium
pentaromativorans US6-1]
Length = 338
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
S+ G + + + EAAKL E I DIN+GCP G G+ L D PL T L+ +
Sbjct: 80 SMQLVGCEPEQMAEAAKLVEDRGAAIIDINMGCPVRKVVNGDAGSALMRDVPLATRLIEA 139
>gi|12835061|dbj|BAB23138.1| unnamed protein product [Mus musculus]
Length = 365
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 152 MVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEP-HCDGN-----DINIGCPQMVAKR 205
M+AKRGHYGA+LQ++W LL ++ + H ++ P C D + QM+ K
Sbjct: 1 MIAKRGHYGAFLQEEWDLLQRMIL---LAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKA 57
Query: 206 GHYGAYLQDDWPLLTELGKMAMLVGILDNTGSW 238
G LLT G+ G + T SW
Sbjct: 58 G---------CQLLTVHGRTKEQKGPMAGTASW 81
Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 27 MVAKRGHYGAYLQDDWPLLTELVV 50
M+AKRGHYGA+LQ++W LL +++
Sbjct: 1 MIAKRGHYGAFLQEEWDLLQRMIL 24
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 85 MVAKRGHYGAYLQDDWPLLTEL 106
M+AKRGHYGA+LQ++W LL +
Sbjct: 1 MIAKRGHYGAFLQEEWDLLQRM 22
>gi|424871216|ref|ZP_18294878.1| tRNA dihydrouridine synthase A [Rhizobium leguminosarum bv. viciae
WSM1455]
gi|393166917|gb|EJC66964.1| tRNA dihydrouridine synthase A [Rhizobium leguminosarum bv. viciae
WSM1455]
Length = 333
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 111 RSHMCGH-------SLMFCGNDSKNLTEAAKLAEPHC-DGIDINIGCPQMVAKRGHYGAY 162
R + GH +L G+D L EA K+AEP+ D I++N+GCP + G +GA
Sbjct: 49 RDRLLGHDAAEHPLALQLGGSDPAKLAEAVKIAEPYLYDEINLNVGCPSDRVQSGTFGAC 108
Query: 163 L 163
L
Sbjct: 109 L 109
>gi|193067849|ref|ZP_03048815.1| tRNA-dihydrouridine synthase A [Escherichia coli E110019]
gi|192958824|gb|EDV89261.1| tRNA-dihydrouridine synthase A [Escherichia coli E110019]
Length = 339
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P++ +LG G+D L + AKLAE D I++N+
Sbjct: 62 KGDYLAYSEEEHPVVLQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 106
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 107 GCPSDRVQNGMFGACLMGNTQLVADCV 133
>gi|18043390|gb|AAH19480.1| Dus1l protein [Mus musculus]
Length = 365
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 18/93 (19%)
Query: 152 MVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEP-HCDGN-----DINIGCPQMVAKR 205
M+AKRGHYGA+LQ++W LL ++ + H ++ P C D + QM+ K
Sbjct: 1 MIAKRGHYGAFLQEEWDLLQRMIL---LAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKA 57
Query: 206 GHYGAYLQDDWPLLTELGKMAMLVGILDNTGSW 238
G LLT G+ G + T SW
Sbjct: 58 G---------CQLLTVHGRTKEQKGPMAGTASW 81
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 27 MVAKRGHYGAYLQDDWPLLTELVV 50
M+AKRGHYGA+LQ++W LL +++
Sbjct: 1 MIAKRGHYGAFLQEEWDLLQRMIL 24
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 19/22 (86%)
Query: 85 MVAKRGHYGAYLQDDWPLLTEL 106
M+AKRGHYGA+LQ++W LL +
Sbjct: 1 MIAKRGHYGAFLQEEWDLLQRM 22
>gi|424910269|ref|ZP_18333646.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. viciae USDA 2370]
gi|392846300|gb|EJA98822.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. viciae USDA 2370]
Length = 338
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 14/88 (15%)
Query: 80 IGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH 139
+ ++VA RG + W L +G M H + G ++ + EAAK+A +
Sbjct: 56 VASRELVANRG-------ESWARLKNVG------MVPHMVQLAGREAHFMAEAAKIAAGN 102
Query: 140 CDGI-DINIGCPQMVAKRGHYGAYLQDD 166
GI DIN+GCP G+ G+ L D
Sbjct: 103 GAGIIDINMGCPAKKVTGGYSGSALMRD 130
>gi|358395827|gb|EHK45214.1| hypothetical protein TRIATDRAFT_292756 [Trichoderma atroviride IMI
206040]
Length = 366
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 18/156 (11%)
Query: 19 DINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDI 78
D+ + CP + + A QD + +V +S ++ F H G+D+
Sbjct: 9 DVAVACPHPL--KIFDAARRQDRFLYACAPMVRYSKLA----------FRQTVHKYGVDL 56
Query: 79 NIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP 138
P ++AK + + +D ++ T + F ND + L A+ L P
Sbjct: 57 -CWTPMILAKEFNRNQFARD-----SDFTINTTGIQPPTIVQFGANDPQELARASTLVAP 110
Query: 139 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
G+D+N GCPQ A GA L ++ + ++V
Sbjct: 111 FVSGVDLNCGCPQSWACAETLGAALMNERERVRDMV 146
>gi|449684650|ref|XP_002157580.2| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Hydra magnipapillata]
Length = 311
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F N++++L AA++ P+ DG+ +N GCPQ A YGA L L+ +++
Sbjct: 68 VQFAANNAEDLALAAEIIYPYADGVGLNCGCPQRWAMAEGYGAQLISKPELINDMI 123
>gi|324517466|gb|ADY46829.1| tRNA-dihydrouridine synthase-like protein [Ascaris suum]
Length = 348
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 163
F T + + F ND A +L +C G+D+N GCP+ RG YG+ L
Sbjct: 104 FTTNKYDSPTIVQFASNDPVEFAAATELVYRYCSGVDLNCGCPKRDVMRGGYGSSL 159
>gi|308161253|gb|EFO63708.1| Embryo-related protein [Giardia lamblia P15]
Length = 406
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 119 LMFCGNDSKNLTEAAKL-----AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 173
L CGN+ + AA+L +DIN+GCP A YG Y+ +WPL+ +
Sbjct: 117 LQLCGNNPFSFRTAAELLYDSPIASQLIALDINLGCPASCASSRGYGFYVTQNWPLVHRI 176
Query: 174 V 174
+
Sbjct: 177 I 177
Score = 36.6 bits (83), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 52 FSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTR 111
FS+ + L+ P+ +DIN+GCP A YG Y+ +WPL+ + +T
Sbjct: 125 FSFRTAAELLYDSPI---ASQLIALDINLGCPASCASSRGYGFYVTQNWPLVHRIISETS 181
Query: 112 S 112
S
Sbjct: 182 S 182
>gi|363897730|ref|ZP_09324268.1| hypothetical protein HMPREF9624_00830 [Oribacterium sp. ACB7]
gi|361958195|gb|EHL11497.1| hypothetical protein HMPREF9624_00830 [Oribacterium sp. ACB7]
Length = 352
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 73 CDGIDINIGCPQMV-AKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTE 131
C + +++ C +MV AK YG D L E G ++ G+D + + E
Sbjct: 66 CKEMGVSLTCTEMVSAKAILYGNKNTDS---LLEKG----EEPGKRAVQLFGSDPEIMAE 118
Query: 132 AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
AK E D ID+N+GCP R G+ L ++ PL ++ S
Sbjct: 119 MAKRVEEDFDIIDVNMGCPVPKVVRNGEGSALMENLPLAEKVLRS 163
>gi|261346564|ref|ZP_05974208.1| tRNA-dihydrouridine synthase A [Providencia rustigianii DSM 4541]
gi|282565268|gb|EFB70803.1| tRNA-dihydrouridine synthase A [Providencia rustigianii DSM 4541]
Length = 341
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLA+ D I++N+
Sbjct: 64 KGDYLAYSEEEHPVSLQLG---------------GSDPAALAQCAKLAQERGYDEINLNV 108
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L D L+ + V
Sbjct: 109 GCPSDRVQNGRFGACLMADAQLVADCV 135
>gi|335044796|ref|ZP_08537819.1| TIM-barrel protein, nifR3 family [Oribacterium sp. oral taxon 108
str. F0425]
gi|333758582|gb|EGL36139.1| TIM-barrel protein, nifR3 family [Oribacterium sp. oral taxon 108
str. F0425]
Length = 352
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 73 CDGIDINIGCPQMV-AKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTE 131
C + +++ C +MV AK YG D L E G ++ G+D + + E
Sbjct: 66 CKEMGVSLTCTEMVSAKAILYGNKNTDS---LLEKG----EEPGKRAVQLFGSDPEIMAE 118
Query: 132 AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
AK E D ID+N+GCP R G+ L ++ PL ++ S
Sbjct: 119 MAKRVEEDFDIIDVNMGCPVPKVVRNGEGSALMENLPLAEKVLRS 163
>gi|386361131|ref|YP_006059376.1| tRNA-dihydrouridine synthase [Thermus thermophilus JL-18]
gi|383510158|gb|AFH39590.1| tRNA-dihydrouridine synthase [Thermus thermophilus JL-18]
Length = 342
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 164
L F+ H +L G D ++L EAA++ E D +++N+GCP A+ G YGA L
Sbjct: 51 LAFRPEEHPL--ALQLAGRDPESLAEAARIGEAFGYDEVNLNLGCPSEKAQEGGYGACLL 108
Query: 165 DD 166
D
Sbjct: 109 LD 110
>gi|86357567|ref|YP_469459.1| tRNA-dihydrouridine synthase [Rhizobium etli CFN 42]
gi|1171717|sp|P41504.1|DUS_RHILP RecName: Full=Probable tRNA-dihydrouridine synthase
gi|581522|emb|CAA50567.1| unnamed protein product [Rhizobium phaseoli]
gi|86281669|gb|ABC90732.1| probable tRNA-dihydrouridine synthase protein [Rhizobium etli CFN
42]
Length = 317
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 98 DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKR 156
+ W L GF+ H + G ++ + EAAK+A H D IDIN+GCP
Sbjct: 48 ESWSRLKAAGFRP------HMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIG 101
Query: 157 GHYGAYLQDD 166
G+ G+ L D
Sbjct: 102 GYSGSALMRD 111
>gi|86358178|ref|YP_470070.1| tRNA-dihydrouridine synthase A [Rhizobium etli CFN 42]
gi|86282280|gb|ABC91343.1| putative tRNA-dihydrouridine synthase (nifR3-like) protein
[Rhizobium etli CFN 42]
Length = 321
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 111 RSHMCGH-------SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAY 162
R + GH +L G+D L EA K+AEP+ D I++N+GCP + G +GA
Sbjct: 37 RERLLGHDATEHPLALQLGGSDPAKLAEAVKIAEPYRYDEINLNVGCPSDRVQSGTFGAC 96
Query: 163 L 163
L
Sbjct: 97 L 97
>gi|324510450|gb|ADY44369.1| tRNA-dihydrouridine synthase-like protein [Ascaris suum]
Length = 560
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 163
F T + + F ND A +L +C G+D+N GCP+ RG YG+ L
Sbjct: 316 FTTNKYDSPTIVQFASNDPVEFAAATELVYRYCSGVDLNCGCPKRDVMRGGYGSSL 371
>gi|261210364|ref|ZP_05924658.1| tRNA-dihydrouridine synthase [Vibrio sp. RC341]
gi|260840422|gb|EEX66988.1| tRNA-dihydrouridine synthase [Vibrio sp. RC341]
Length = 335
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
RG + AY Q++ P+ +L F G++ K+L AKLA+ D I++N+
Sbjct: 55 RGDFLAYNQEEHPV---------------ALQFGGSNPKDLAHCAKLAQERGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
GCP + G +GA L + L+ V + V
Sbjct: 100 GCPSDRVQNGRFGACLMAEPELVAECVAAMRSV 132
>gi|398819906|ref|ZP_10578451.1| tRNA-dihydrouridine synthase, partial [Bradyrhizobium sp. YR681]
gi|398229475|gb|EJN15552.1| tRNA-dihydrouridine synthase, partial [Bradyrhizobium sp. YR681]
Length = 284
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 164
LGF H +L G+D ++L +AA++ E D I++N+GCP K G +GA L
Sbjct: 6 LGFDASEHPV--ALQLGGSDPRDLAQAARIGEEFGYDEINLNVGCPSDRVKDGRFGACLM 63
Query: 165 DDWPLLTNLV 174
+ L+ V
Sbjct: 64 AEPELVARCV 73
>gi|319408524|emb|CBI82177.1| tRNA-dihydrouridine synthase A [Bartonella schoenbuchensis R1]
Length = 326
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYL 163
LGF H +L G+DS+ L EAA++AE D I++N+GCP + G +GA L
Sbjct: 57 LGFSDEEHPI--ALQLGGSDSQKLAEAARIAEDFGYDEINLNVGCPSNRVQAGMFGACL 113
>gi|302925557|ref|XP_003054119.1| hypothetical protein NECHADRAFT_74526 [Nectria haematococca mpVI
77-13-4]
gi|256735060|gb|EEU48406.1| hypothetical protein NECHADRAFT_74526 [Nectria haematococca mpVI
77-13-4]
Length = 165
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 67 FIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDS 126
F H G+D+ P ++AK + ++ +D ++L ++ + + F N
Sbjct: 36 FRQTVHKYGVDL-CWTPMVLAKEFNRNSFARD-----SDLTISSKPNQPATIVQFGANVP 89
Query: 127 KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
L A+ L P G+D+N GCPQ A GA L + L+ ++V
Sbjct: 90 LELARASALVAPDVQGVDLNCGCPQSWACAEKLGAALMNHRELVRDMV 137
>gi|402487585|ref|ZP_10834403.1| tRNA-dihydrouridine synthase [Rhizobium sp. CCGE 510]
gi|401813454|gb|EJT05798.1| tRNA-dihydrouridine synthase [Rhizobium sp. CCGE 510]
Length = 331
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 98 DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKR 156
+ W L GF+ H + G ++ + EAAK+A H D IDIN+GCP
Sbjct: 62 ESWSRLQAAGFRP------HMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIG 115
Query: 157 GHYGAYLQDD 166
G+ G+ L D
Sbjct: 116 GYSGSALMRD 125
>gi|423118069|ref|ZP_17105753.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5246]
gi|376402402|gb|EHT14996.1| tRNA-dihydrouridine synthase A [Klebsiella oxytoca 10-5246]
Length = 332
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ PL +LG G+D L + AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPLALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + +
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCI 126
>gi|229512584|ref|ZP_04402054.1| tRNA dihydrouridine synthase A [Vibrio cholerae TMA 21]
gi|229350366|gb|EEO15316.1| tRNA dihydrouridine synthase A [Vibrio cholerae TMA 21]
Length = 315
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
RG + AY Q++ P+ +L F G++ K+L AKLA+ D I++N+
Sbjct: 35 RGDFLAYNQEEHPV---------------ALQFGGSNPKDLAHCAKLAQERGYDEINLNV 79
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
GCP + G +GA L + L+ V + V
Sbjct: 80 GCPSDRVQNGRFGACLMGEPDLVAECVAAMRAV 112
>gi|153216666|ref|ZP_01950573.1| TIM-barrel protein, yjbN family [Vibrio cholerae 1587]
gi|124114177|gb|EAY32997.1| TIM-barrel protein, yjbN family [Vibrio cholerae 1587]
Length = 327
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
RG + AY Q++ P+ +L F G++ K+L AKLA+ D I++N+
Sbjct: 47 RGDFLAYNQEEHPV---------------ALQFGGSNPKDLAHCAKLAQERGYDEINLNV 91
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
GCP + G +GA L + L+ V + V
Sbjct: 92 GCPSDRVQNGRFGACLMGEPDLVAECVATMRAV 124
>gi|424895509|ref|ZP_18319083.1| tRNA dihydrouridine synthase A [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393179736|gb|EJC79775.1| tRNA dihydrouridine synthase A [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 333
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 111 RSHMCGH-------SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAY 162
R + GH +L G+D L EA K+AEP+ D I++N+GCP + G +GA
Sbjct: 49 RDRLLGHDAAEHPLALQLGGSDPAKLAEAVKIAEPYGYDEINLNVGCPSDRVQSGTFGAC 108
Query: 163 L 163
L
Sbjct: 109 L 109
>gi|350296469|gb|EGZ77446.1| FMN-linked oxidoreductase [Neurospora tetrasperma FGSC 2509]
Length = 341
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F ND + L A+ L P+ G+D+N GCPQ A GA L + L+ ++V
Sbjct: 36 VQFGANDPQELARASTLVAPYAGGVDLNCGCPQSWACAETLGAALMEKRELVRDMV 91
>gi|213420476|ref|ZP_03353542.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
Length = 181
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|209549216|ref|YP_002281133.1| hypothetical protein Rleg2_1617 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534972|gb|ACI54907.1| TIM-barrel protein, nifR3 family [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 315
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 98 DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKR 156
+ W L GF+ H + G ++ + EAAK+A H D IDIN+GCP
Sbjct: 46 ESWSRLRAAGFRP------HMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIG 99
Query: 157 GHYGAYLQDD 166
G+ G+ L D
Sbjct: 100 GYSGSALMRD 109
>gi|405117593|gb|AFR92368.1| tRNA-dihydrouridine synthase [Cryptococcus neoformans var. grubii
H99]
Length = 408
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 120 MFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
F ++K+L +AA+L P+ DGID+N GCPQ A G L L+ ++V
Sbjct: 155 QFASPNAKSLADAAELISPYVDGIDLNCGCPQRWAYNEGIGCALLRKPELVRDMV 209
>gi|321251331|ref|XP_003192028.1| hypothetical protein CGB_B2580W [Cryptococcus gattii WM276]
gi|317458496|gb|ADV20241.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 408
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 120 MFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
F ++K+L +AA+L P+ DGID+N GCPQ A G L L+ ++V
Sbjct: 155 QFASPNAKSLADAAELISPYVDGIDLNCGCPQRWAYNEGIGCALLRKPELVRDMV 209
>gi|395233275|ref|ZP_10411517.1| tRNA-dihydrouridine synthase A [Enterobacter sp. Ag1]
gi|394732321|gb|EJF32016.1| tRNA-dihydrouridine synthase A [Enterobacter sp. Ag1]
Length = 334
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D + L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPIALQLG---------------GSDPQALAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + +
Sbjct: 100 GCPSDRVQNGRFGACLMGEAQLVADCI 126
>gi|424894921|ref|ZP_18318495.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. trifolii WSM2297]
gi|393179148|gb|EJC79187.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. trifolii WSM2297]
Length = 339
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 98 DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKR 156
+ W L GF+ H + G ++ + EAAK+A H D IDIN+GCP
Sbjct: 70 ESWSRLKAAGFRP------HMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIG 123
Query: 157 GHYGAYLQDD 166
G+ G+ L D
Sbjct: 124 GYSGSALMRD 133
>gi|424890498|ref|ZP_18314097.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. trifolii WSM2012]
gi|393172716|gb|EJC72761.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. trifolii WSM2012]
Length = 339
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 98 DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKR 156
+ W L GF+ H + G ++ + EAAK+A H D IDIN+GCP
Sbjct: 70 ESWSRLKAAGFRP------HMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIG 123
Query: 157 GHYGAYLQDD 166
G+ G+ L D
Sbjct: 124 GYSGSALMRD 133
>gi|51246252|ref|YP_066136.1| hypothetical protein DP2400 [Desulfotalea psychrophila LSv54]
gi|50877289|emb|CAG37129.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 354
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 74 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSH 113
DG+DIN+GCP +RG GA L +DW + ++ R H
Sbjct: 125 DGVDINLGCPAPSVRRGGAGAALAEDWDRVRDIVSSARRH 164
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 141 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
DG+DIN+GCP +RG GA L +DW + ++V S
Sbjct: 125 DGVDINLGCPAPSVRRGGAGAALAEDWDRVRDIVSSAR 162
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 16 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
DG+DIN+GCP +RG GA L +DW + ++V
Sbjct: 125 DGVDINLGCPAPSVRRGGAGAALAEDWDRVRDIV 158
>gi|452750539|ref|ZP_21950286.1| tRNA dihydrouridine synthase B [alpha proteobacterium JLT2015]
gi|451961733|gb|EMD84142.1| tRNA dihydrouridine synthase B [alpha proteobacterium JLT2015]
Length = 332
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
S+ G D + EAAKL E I DIN+GCP GH G+ L + PL T L+ +
Sbjct: 74 SMQLAGCDPDVMAEAAKLNEQRGAAIIDINMGCPVKKIVNGHAGSALMREVPLATRLMEA 133
>gi|134106399|ref|XP_778210.1| hypothetical protein CNBA2100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260913|gb|EAL23563.1| hypothetical protein CNBA2100 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 407
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
F ++K+L +AA+L P+ DGID+N GCPQ A G L L+ ++V
Sbjct: 156 FASPNAKSLADAAELISPYVDGIDLNCGCPQRWAYNEGIGCALLRKPELVRDMV 209
>gi|58258399|ref|XP_566612.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57222749|gb|AAW40793.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 407
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
F ++K+L +AA+L P+ DGID+N GCPQ A G L L+ ++V
Sbjct: 156 FASPNAKSLADAAELISPYVDGIDLNCGCPQRWAYNEGIGCALLRKPELVRDMV 209
>gi|424914099|ref|ZP_18337463.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. trifolii WSM597]
gi|392850275|gb|EJB02796.1| putative TIM-barrel protein, nifR3 family [Rhizobium leguminosarum
bv. trifolii WSM597]
Length = 338
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 98 DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKR 156
+ W L GF+ H + G ++ + EAAK+A H D IDIN+GCP
Sbjct: 69 ESWSRLRAAGFRP------HMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIG 122
Query: 157 GHYGAYLQDD 166
G+ G+ L D
Sbjct: 123 GYSGSALMRD 132
>gi|157111456|ref|XP_001651572.1| tRNA-dihydrouridine synthase [Aedes aegypti]
gi|108878341|gb|EAT42566.1| AAEL005898-PA [Aedes aegypti]
Length = 391
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 39 QDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD 98
+DD P++ + + +KN F+ + P+ DG+D+N GCPQ A + YG+ L
Sbjct: 75 RDDTPVIAQ------FAAKNAVDFLSATEMTFPYVDGVDLNCGCPQRWAMQDGYGSALLR 128
Query: 99 DWPLLTELGFKTRSHM 114
L+ ++ R ++
Sbjct: 129 TPELIADMLSTVRRNL 144
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
F ++ + A ++ P+ DG+D+N GCPQ A + YG+ L L+ +++ +
Sbjct: 84 FAAKNAVDFLSATEMTFPYVDGVDLNCGCPQRWAMQDGYGSALLRTPELIADMLST 139
>gi|384529722|ref|YP_005713810.1| dihydrouridine synthase DuS [Sinorhizobium meliloti BL225C]
gi|333811898|gb|AEG04567.1| dihydrouridine synthase DuS [Sinorhizobium meliloti BL225C]
Length = 385
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 62 FMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGH---- 117
F P+F P D D + + A++ A L + + + R + GH
Sbjct: 17 FKAPVFAVAPMIDWTDRHY---RFFARQLSSHALLYTEMIVADAILRGDREKLLGHDTSE 73
Query: 118 ---SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 173
+L G+D + EAA++AE D I++N+GCP + G +GA L + L+ +
Sbjct: 74 HPVALQLGGSDPAKMAEAARIAEGFGYDEINMNVGCPSDRVQSGTFGACLMQEPALVADC 133
Query: 174 VYS 176
+ +
Sbjct: 134 IAA 136
>gi|297582262|ref|ZP_06944177.1| TIM-barrel protein [Vibrio cholerae RC385]
gi|297533520|gb|EFH72366.1| TIM-barrel protein [Vibrio cholerae RC385]
Length = 327
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
RG + AY Q++ P+ +L F G++ K+L AKLA+ D I++N+
Sbjct: 47 RGDFLAYNQEEHPV---------------ALQFGGSNPKDLAHCAKLAQERGYDEINLNV 91
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
GCP + G +GA L + L+ V + V
Sbjct: 92 GCPSDRVQNGRFGACLMGEPDLVAECVAAMRAV 124
>gi|19075762|ref|NP_588262.1| tRNA dihydrouridine synthase Dus4 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74626875|sp|O74553.1|DUS4_SCHPO RecName: Full=tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+];
AltName: Full=tRNA-dihydrouridine synthase 4
gi|3560252|emb|CAA20719.1| tRNA dihydrouridine synthase Dus4 (predicted) [Schizosaccharomyces
pombe]
Length = 326
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T L F +D L +AA+L P+ DGI IN GCPQ A + G+ L D+
Sbjct: 67 FSTNDADASLILQFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAIQEGIGSALLDEP 126
Query: 168 PLLTNLVYSPNMVHFVIAEPHCDGNDINIG 197
+ LV + V + E C I I
Sbjct: 127 EKVHKLVRA---VKSTLGESFCTEVKIRIA 153
>gi|418404338|ref|ZP_12977801.1| tRNA-dihydrouridine synthase A [Sinorhizobium meliloti CCNWSX0020]
gi|359501730|gb|EHK74329.1| tRNA-dihydrouridine synthase A [Sinorhizobium meliloti CCNWSX0020]
Length = 385
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 62 FMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGH---- 117
F P+F P D D + + A++ A L + + + R + GH
Sbjct: 17 FKAPVFAVAPMIDWTDRHY---RFFARQLSSHALLYTEMIVADAILRGDREKLLGHDASE 73
Query: 118 ---SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 173
+L G+D + EAA++AE D I++N+GCP + G +GA L + L+ +
Sbjct: 74 HPVALQLGGSDPAKMAEAARIAEGFGYDEINMNVGCPSDRVQSGTFGACLMQEPALVADC 133
Query: 174 VYS 176
+ +
Sbjct: 134 IAA 136
>gi|433613688|ref|YP_007190486.1| tRNA-dihydrouridine synthase [Sinorhizobium meliloti GR4]
gi|429551878|gb|AGA06887.1| tRNA-dihydrouridine synthase [Sinorhizobium meliloti GR4]
Length = 385
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 62 FMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGH---- 117
F P+F P D D + + A++ A L + + + R + GH
Sbjct: 17 FKAPVFAVAPMIDWTDRHY---RFFARQLSSHALLYTEMIVADAILRGDREKLLGHDTSE 73
Query: 118 ---SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 173
+L G+D + EAA++AE D I++N+GCP + G +GA L + L+ +
Sbjct: 74 HPVALQLGGSDPAKMAEAARIAEGFGYDEINMNVGCPSDRVQSGTFGACLMQEPALVADC 133
Query: 174 VYS 176
+ +
Sbjct: 134 IAA 136
>gi|120600206|ref|YP_964780.1| tRNA-dihydrouridine synthase A [Shewanella sp. W3-18-1]
gi|120560299|gb|ABM26226.1| TIM-barrel protein, yjbN family [Shewanella sp. W3-18-1]
Length = 343
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINI 147
RG Y AY Q++ PL +LG G++ ++L AKLA E D +++N+
Sbjct: 65 RGDYLAYNQEEHPLALQLG---------------GSNPQDLARCAKLAAERGYDEVNLNV 109
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ V
Sbjct: 110 GCPSDRVQNGRFGACLMAEPELVAECV 136
>gi|15640406|ref|NP_230033.1| tRNA-dihydrouridine synthase A [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121590952|ref|ZP_01678272.1| TIM-barrel protein, yjbN family [Vibrio cholerae 2740-80]
gi|121729744|ref|ZP_01682184.1| TIM-barrel protein, yjbN family [Vibrio cholerae V52]
gi|147675235|ref|YP_001218647.1| tRNA-dihydrouridine synthase A [Vibrio cholerae O395]
gi|153820423|ref|ZP_01973090.1| TIM-barrel protein, yjbN family [Vibrio cholerae NCTC 8457]
gi|153823513|ref|ZP_01976180.1| TIM-barrel protein, yjbN family [Vibrio cholerae B33]
gi|153827262|ref|ZP_01979929.1| TIM-barrel protein, yjbN family [Vibrio cholerae MZO-2]
gi|153830467|ref|ZP_01983134.1| TIM-barrel protein, yjbN family [Vibrio cholerae 623-39]
gi|227080591|ref|YP_002809142.1| tRNA-dihydrouridine synthase A [Vibrio cholerae M66-2]
gi|227116785|ref|YP_002818681.1| NifR3/Smm1 family protein [Vibrio cholerae O395]
gi|229504962|ref|ZP_04394473.1| tRNA dihydrouridine synthase A [Vibrio cholerae BX 330286]
gi|229508600|ref|ZP_04398096.1| tRNA dihydrouridine synthase A [Vibrio cholerae B33]
gi|229516011|ref|ZP_04405462.1| tRNA dihydrouridine synthase A [Vibrio cholerae RC9]
gi|229526966|ref|ZP_04416363.1| tRNA dihydrouridine synthase A [Vibrio cholerae 12129(1)]
gi|229606339|ref|YP_002876987.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MJ-1236]
gi|254286198|ref|ZP_04961157.1| TIM-barrel protein, yjbN family [Vibrio cholerae AM-19226]
gi|254851689|ref|ZP_05241039.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MO10]
gi|298501275|ref|ZP_07011073.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MAK 757]
gi|360037019|ref|YP_004938782.1| tRNA-dihydrouridine synthase A [Vibrio cholerae O1 str.
2010EL-1786]
gi|379740257|ref|YP_005332226.1| tRNA-dihydrouridine synthase A [Vibrio cholerae IEC224]
gi|418331085|ref|ZP_12942036.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-06A1]
gi|418347786|ref|ZP_12952523.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-43A1]
gi|421327606|ref|ZP_15778123.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1042(15)]
gi|424025899|ref|ZP_17765520.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-69A1]
gi|38605061|sp|Q9KUX9.1|DUSA_VIBCH RecName: Full=tRNA-dihydrouridine synthase A
gi|9654797|gb|AAF93552.1| NifR3/Smm1 family protein [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121547178|gb|EAX57305.1| TIM-barrel protein, yjbN family [Vibrio cholerae 2740-80]
gi|121628529|gb|EAX61013.1| TIM-barrel protein, yjbN family [Vibrio cholerae V52]
gi|126509034|gb|EAZ71628.1| TIM-barrel protein, yjbN family [Vibrio cholerae NCTC 8457]
gi|126518958|gb|EAZ76181.1| TIM-barrel protein, yjbN family [Vibrio cholerae B33]
gi|146317118|gb|ABQ21657.1| TIM-barrel protein, yjbN family [Vibrio cholerae O395]
gi|148874069|gb|EDL72204.1| TIM-barrel protein, yjbN family [Vibrio cholerae 623-39]
gi|149738810|gb|EDM53152.1| TIM-barrel protein, yjbN family [Vibrio cholerae MZO-2]
gi|150423613|gb|EDN15555.1| TIM-barrel protein, yjbN family [Vibrio cholerae AM-19226]
gi|227008479|gb|ACP04691.1| NifR3/Smm1 family protein [Vibrio cholerae M66-2]
gi|227012235|gb|ACP08445.1| NifR3/Smm1 family protein [Vibrio cholerae O395]
gi|229335578|gb|EEO01058.1| tRNA dihydrouridine synthase A [Vibrio cholerae 12129(1)]
gi|229346914|gb|EEO11881.1| tRNA dihydrouridine synthase A [Vibrio cholerae RC9]
gi|229354368|gb|EEO19295.1| tRNA dihydrouridine synthase A [Vibrio cholerae B33]
gi|229358020|gb|EEO22936.1| tRNA dihydrouridine synthase A [Vibrio cholerae BX 330286]
gi|229368994|gb|ACQ59417.1| tRNA dihydrouridine synthase A [Vibrio cholerae MJ-1236]
gi|254847394|gb|EET25808.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MO10]
gi|297540029|gb|EFH76092.1| tRNA-dihydrouridine synthase A [Vibrio cholerae MAK 757]
gi|356421741|gb|EHH75232.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-06A1]
gi|356448253|gb|EHI01033.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-43A1]
gi|356648173|gb|AET28228.1| tRNA-dihydrouridine synthase A [Vibrio cholerae O1 str.
2010EL-1786]
gi|378793767|gb|AFC57238.1| tRNA-dihydrouridine synthase A [Vibrio cholerae IEC224]
gi|395933128|gb|EJH43870.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1042(15)]
gi|408881554|gb|EKM20431.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-69A1]
Length = 327
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
RG + AY Q++ P+ +L F G++ K+L AKLA+ D I++N+
Sbjct: 47 RGDFLAYNQEEHPV---------------ALQFGGSNPKDLAHCAKLAQERGYDEINLNV 91
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
GCP + G +GA L + L+ V + V
Sbjct: 92 GCPSDRVQNGRFGACLMGEPDLVAECVAAMRAV 124
>gi|421350237|ref|ZP_15800604.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-25]
gi|395954959|gb|EJH65565.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-25]
Length = 316
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
RG + AY Q++ P+ +L F G++ K+L AKLA+ D I++N+
Sbjct: 36 RGDFLAYNQEEHPV---------------ALQFGGSNPKDLAHCAKLAQERGYDEINLNV 80
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
GCP + G +GA L + L+ V + V
Sbjct: 81 GCPSDRVQNGRFGACLMAEPDLVAECVAAMRAV 113
>gi|386312475|ref|YP_006008640.1| yjbN family TIM-barrel protein [Shewanella putrefaciens 200]
gi|319425100|gb|ADV53174.1| TIM-barrel protein, yjbN family [Shewanella putrefaciens 200]
Length = 343
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINI 147
RG Y AY Q++ PL +LG G++ ++L AKLA E D +++N+
Sbjct: 65 RGDYLAYNQEEHPLALQLG---------------GSNPQDLARCAKLAAERGYDEVNLNV 109
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ V
Sbjct: 110 GCPSDRVQNGRFGACLMAEPELVAECV 136
>gi|384440277|ref|YP_005655001.1| tRNA-dihydrouridine synthase [Thermus sp. CCB_US3_UF1]
gi|359291410|gb|AEV16927.1| tRNA-dihydrouridine synthase [Thermus sp. CCB_US3_UF1]
Length = 341
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 118 SLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDD 166
+L GND + L EAA++ E D +++N+GCP A+ G YGA L D
Sbjct: 61 ALQLAGNDPRVLAEAARIGEAWGYDEVNLNLGCPSEKAQEGGYGACLLLD 110
>gi|90423563|ref|YP_531933.1| tRNA-dihydrouridine synthase A [Rhodopseudomonas palustris BisB18]
gi|90105577|gb|ABD87614.1| TIM-barrel protein, yjbN family [Rhodopseudomonas palustris BisB18]
Length = 330
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 93 GAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQ 151
GA + D L LGF H +L G+DS +L AAK+ E D I++N+GCP
Sbjct: 43 GAVIHGDRQRL--LGFDASEHPL--ALQLGGSDSADLATAAKIGEDFGYDEINLNVGCPS 98
Query: 152 MVAKRGHYGAYLQDDWPLLTN 172
K G +GA L + L+
Sbjct: 99 DRVKDGRFGACLMAEPALVAE 119
>gi|386032623|ref|YP_005952536.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae KCTC 2242]
gi|424828429|ref|ZP_18253157.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|449060398|ref|ZP_21738057.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae hvKP1]
gi|339759751|gb|AEJ95971.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae KCTC 2242]
gi|414705834|emb|CCN27538.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|448873903|gb|EMB08971.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae hvKP1]
Length = 332
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D + L + AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPQALAQCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + +
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCI 126
>gi|417394894|ref|ZP_12156928.1| tRNA dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Minnesota str. A4-603]
gi|353604011|gb|EHC58927.1| tRNA dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Minnesota str. A4-603]
Length = 182
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|422010242|ref|ZP_16357223.1| tRNA-dihydrouridine synthase A [Providencia rettgeri Dmel1]
gi|414091545|gb|EKT53228.1| tRNA-dihydrouridine synthase A [Providencia rettgeri Dmel1]
Length = 137
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 16/91 (17%)
Query: 85 MVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGI 143
++ +G Y A+ +++ P+ +LG G+D L + AKLA+ D I
Sbjct: 52 IIYGKGDYLAFSEEEHPIALQLG---------------GSDPAALAQCAKLAQERGYDEI 96
Query: 144 DINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
++N+GCP + G +GA L D L+ + V
Sbjct: 97 NLNVGCPSDRVQNGRFGACLMGDAQLVADCV 127
>gi|156536943|ref|XP_001608232.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Nasonia
vitripennis]
Length = 346
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F + + EA ++ P+ +G+D+N GCPQ A + YGA L L+ LV
Sbjct: 73 VQFAAKEVDDFVEATEMVAPYSNGVDLNCGCPQRWALKDGYGADLLTKPQLVKELV 128
>gi|15888769|ref|NP_354450.1| nitrogen regulation protein [Agrobacterium fabrum str. C58]
gi|15156519|gb|AAK87235.1| nitrogen regulation protein [Agrobacterium fabrum str. C58]
Length = 338
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 80 IGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH 139
+ ++VA RG + W L G M H + G ++ + EAAK+A +
Sbjct: 56 VASRELVANRG-------ESWARLKNAG------MVPHMVQLAGREAHFMAEAAKIAADN 102
Query: 140 CDGI-DINIGCPQMVAKRGHYGAYLQDD 166
GI DIN+GCP G+ G+ L D
Sbjct: 103 GAGIIDINMGCPAKKVTGGYSGSALMRD 130
>gi|146309919|ref|YP_001174993.1| tRNA-dihydrouridine synthase A [Enterobacter sp. 638]
gi|145316795|gb|ABP58942.1| tRNA-U16,U17-dihydrouridine synthase [Enterobacter sp. 638]
Length = 331
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 16/85 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L E AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAECAKLAEARGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTN 172
GCP + G +GA L + L+ +
Sbjct: 99 GCPSDRVQNGMFGACLMGNAQLVAD 123
>gi|449296646|gb|EMC92665.1| hypothetical protein BAUCODRAFT_27019 [Baudoinia compniacensis UAMH
10762]
Length = 395
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 117 HSLM--FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
H+L+ F +D AA+L P DG+D+N GCPQ A + G L L+ N++
Sbjct: 139 HALIAQFASSDPTEFARAAELIAPWVDGVDLNCGCPQSWALKEGIGCSLMSSPTLVANMI 198
Query: 175 YS 176
+
Sbjct: 199 RA 200
>gi|429111836|ref|ZP_19173606.1| tRNA dihydrouridine synthase A [Cronobacter malonaticus 507]
gi|426312993|emb|CCJ99719.1| tRNA dihydrouridine synthase A [Cronobacter malonaticus 507]
Length = 331
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY + + P+ +LG G+D L + AKLAE D I++N+
Sbjct: 54 KGDYLAYSEQEHPVALQLG---------------GSDPAALAQCAKLAEERGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G +GA L + L+ + V +
Sbjct: 99 GCPSDRVQNGRFGACLMGEAQLVADCVRA 127
>gi|335037236|ref|ZP_08530547.1| nitrogen regulation protein [Agrobacterium sp. ATCC 31749]
gi|333791392|gb|EGL62778.1| nitrogen regulation protein [Agrobacterium sp. ATCC 31749]
Length = 338
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 80 IGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH 139
+ ++VA RG + W L G M H + G ++ + EAAK+A +
Sbjct: 56 VASRELVANRG-------ESWARLKNAG------MVPHMVQLAGREAHFMAEAAKIAADN 102
Query: 140 CDGI-DINIGCPQMVAKRGHYGAYLQDD 166
GI DIN+GCP G+ G+ L D
Sbjct: 103 GAGIIDINMGCPAKKVTGGYSGSALMRD 130
>gi|255747176|ref|ZP_05421119.1| tRNA dihydrouridine synthase A [Vibrio cholera CIRS 101]
gi|262147248|ref|ZP_06028049.1| tRNA dihydrouridine synthase A [Vibrio cholerae INDRE 91/1]
gi|262166864|ref|ZP_06034586.1| tRNA dihydrouridine synthase A [Vibrio cholerae RC27]
gi|262190629|ref|ZP_06048865.1| tRNA dihydrouridine synthase A [Vibrio cholerae CT 5369-93]
gi|384423684|ref|YP_005633042.1| tRNA dihydrouridine synthase A [Vibrio cholerae LMA3984-4]
gi|417811453|ref|ZP_12458115.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-49A2]
gi|417815223|ref|ZP_12461859.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HCUF01]
gi|417819263|ref|ZP_12465881.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE39]
gi|418336243|ref|ZP_12945143.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-23A1]
gi|418342624|ref|ZP_12949426.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-28A1]
gi|418356574|ref|ZP_12959291.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-61A1]
gi|419824849|ref|ZP_14348357.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1033(6)]
gi|419835325|ref|ZP_14358771.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-46B1]
gi|421315620|ref|ZP_15766193.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1032(5)]
gi|421319164|ref|ZP_15769724.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1038(11)]
gi|421323199|ref|ZP_15773729.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1041(14)]
gi|421330603|ref|ZP_15781086.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1046(19)]
gi|421334200|ref|ZP_15784671.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1048(21)]
gi|421338101|ref|ZP_15788541.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-20A2]
gi|421341907|ref|ZP_15792315.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-43B1]
gi|421348846|ref|ZP_15799220.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-46A1]
gi|421356363|ref|ZP_15806692.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-45]
gi|422305806|ref|ZP_16392994.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1035(8)]
gi|422890417|ref|ZP_16932844.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-40A1]
gi|422901216|ref|ZP_16936596.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-48A1]
gi|422905402|ref|ZP_16940261.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-70A1]
gi|422912122|ref|ZP_16946653.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HFU-02]
gi|422921629|ref|ZP_16954842.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
BJG-01]
gi|422924600|ref|ZP_16957641.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-38A1]
gi|423143649|ref|ZP_17131268.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-19A1]
gi|423148632|ref|ZP_17135995.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-21A1]
gi|423152408|ref|ZP_17139626.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-22A1]
gi|423155207|ref|ZP_17142347.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-32A1]
gi|423159066|ref|ZP_17146041.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-33A2]
gi|423163743|ref|ZP_17150541.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-48B2]
gi|423729763|ref|ZP_17703086.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-17A1]
gi|423733686|ref|ZP_17706903.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-41B1]
gi|423746985|ref|ZP_17711274.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-50A2]
gi|423891595|ref|ZP_17725288.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-62A1]
gi|423926371|ref|ZP_17729905.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-77A1]
gi|423946111|ref|ZP_17733325.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-40]
gi|423975254|ref|ZP_17736873.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-46]
gi|424000926|ref|ZP_17744020.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-17A2]
gi|424005086|ref|ZP_17748075.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-37A1]
gi|424007916|ref|ZP_17750872.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-44C1]
gi|424022881|ref|ZP_17762549.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-62B1]
gi|424589656|ref|ZP_18029104.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1037(10)]
gi|424593901|ref|ZP_18033245.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1040(13)]
gi|424597835|ref|ZP_18037038.1| tRNA dihydrouridine synthase A family protein [Vibrio Cholerae
CP1044(17)]
gi|424600600|ref|ZP_18039760.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1047(20)]
gi|424605516|ref|ZP_18044485.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1050(23)]
gi|424609233|ref|ZP_18048097.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-39A1]
gi|424612151|ref|ZP_18050963.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-41A1]
gi|424616029|ref|ZP_18054725.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-42A1]
gi|424620789|ref|ZP_18059321.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-47A1]
gi|424643609|ref|ZP_18081368.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-56A2]
gi|424651529|ref|ZP_18089058.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-57A2]
gi|424655476|ref|ZP_18092784.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-81A2]
gi|429885245|ref|ZP_19366841.1| tRNA dihydrouridine synthase A [Vibrio cholerae PS15]
gi|440712312|ref|ZP_20892935.1| tRNA dihydrouridine synthase A [Vibrio cholerae 4260B]
gi|443502428|ref|ZP_21069422.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-64A1]
gi|443506335|ref|ZP_21073134.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-65A1]
gi|443510171|ref|ZP_21076844.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-67A1]
gi|443514007|ref|ZP_21080553.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-68A1]
gi|443517820|ref|ZP_21084244.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-71A1]
gi|443522402|ref|ZP_21088653.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-72A2]
gi|443529332|ref|ZP_21095350.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-7A1]
gi|443534069|ref|ZP_21099993.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-80A1]
gi|443536739|ref|ZP_21102598.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-81A1]
gi|449054390|ref|ZP_21733058.1| tRNA dihydrouridine synthase A [Vibrio cholerae O1 str. Inaba
G4222]
gi|255735225|gb|EET90627.1| tRNA dihydrouridine synthase A [Vibrio cholera CIRS 101]
gi|262024694|gb|EEY43373.1| tRNA dihydrouridine synthase A [Vibrio cholerae RC27]
gi|262031308|gb|EEY49921.1| tRNA dihydrouridine synthase A [Vibrio cholerae INDRE 91/1]
gi|262033494|gb|EEY51996.1| tRNA dihydrouridine synthase A [Vibrio cholerae CT 5369-93]
gi|327483237|gb|AEA77644.1| tRNA dihydrouridine synthase A [Vibrio cholerae LMA3984-4]
gi|340042793|gb|EGR03757.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE39]
gi|340044179|gb|EGR05133.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HCUF01]
gi|340045270|gb|EGR06215.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-49A2]
gi|341625864|gb|EGS51287.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-70A1]
gi|341627287|gb|EGS52606.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-48A1]
gi|341627856|gb|EGS53147.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-40A1]
gi|341641404|gb|EGS65957.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HFU-02]
gi|341648380|gb|EGS72441.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
BJG-01]
gi|341648777|gb|EGS72812.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-38A1]
gi|356422305|gb|EHH75783.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-21A1]
gi|356426972|gb|EHH80250.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-19A1]
gi|356433419|gb|EHH86609.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-23A1]
gi|356434893|gb|EHH88056.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-22A1]
gi|356438189|gb|EHH91237.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-28A1]
gi|356443560|gb|EHH96380.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-32A1]
gi|356450670|gb|EHI03386.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-33A2]
gi|356451375|gb|EHI04062.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-61A1]
gi|356456564|gb|EHI09160.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-48B2]
gi|395922886|gb|EJH33700.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1032(5)]
gi|395924059|gb|EJH34869.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1041(14)]
gi|395925938|gb|EJH36731.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1038(11)]
gi|395934998|gb|EJH45734.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1046(19)]
gi|395937960|gb|EJH48666.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1048(21)]
gi|395939138|gb|EJH49822.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-46A1]
gi|395946601|gb|EJH57263.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-20A2]
gi|395946630|gb|EJH57291.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-43B1]
gi|395949073|gb|EJH59706.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-45]
gi|395964169|gb|EJH74408.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-56A2]
gi|395964343|gb|EJH74572.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-57A2]
gi|395967285|gb|EJH77382.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-42A1]
gi|395975825|gb|EJH85300.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-47A1]
gi|395979547|gb|EJH88895.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1047(20)]
gi|408010284|gb|EKG48152.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-39A1]
gi|408017232|gb|EKG54749.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-41A1]
gi|408036766|gb|EKG73185.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1037(10)]
gi|408037651|gb|EKG74036.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1040(13)]
gi|408045146|gb|EKG81011.1| tRNA dihydrouridine synthase A family protein [Vibrio Cholerae
CP1044(17)]
gi|408047091|gb|EKG82746.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1050(23)]
gi|408057830|gb|EKG92664.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-81A2]
gi|408611999|gb|EKK85350.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1033(6)]
gi|408627872|gb|EKL00664.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-17A1]
gi|408628064|gb|EKL00841.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
CP1035(8)]
gi|408631968|gb|EKL04480.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-41B1]
gi|408643238|gb|EKL14972.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-50A2]
gi|408659229|gb|EKL30282.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-77A1]
gi|408660151|gb|EKL31177.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-62A1]
gi|408662188|gb|EKL33157.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-40]
gi|408666288|gb|EKL37083.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-46]
gi|408849421|gb|EKL89440.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-37A1]
gi|408849877|gb|EKL89877.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-17A2]
gi|408859105|gb|EKL98772.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-46B1]
gi|408867001|gb|EKM06364.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-44C1]
gi|408874802|gb|EKM13969.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-62B1]
gi|429227961|gb|EKY33916.1| tRNA dihydrouridine synthase A [Vibrio cholerae PS15]
gi|439972085|gb|ELP48390.1| tRNA dihydrouridine synthase A [Vibrio cholerae 4260B]
gi|443433213|gb|ELS75729.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-64A1]
gi|443437045|gb|ELS83153.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-65A1]
gi|443440877|gb|ELS90557.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-67A1]
gi|443444697|gb|ELS97964.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-68A1]
gi|443448535|gb|ELT05163.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-71A1]
gi|443451593|gb|ELT11846.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-72A2]
gi|443459900|gb|ELT27293.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-7A1]
gi|443462762|gb|ELT33789.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-80A1]
gi|443467741|gb|ELT42396.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HC-81A1]
gi|448266183|gb|EMB03413.1| tRNA dihydrouridine synthase A [Vibrio cholerae O1 str. Inaba
G4222]
Length = 316
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
RG + AY Q++ P+ +L F G++ K+L AKLA+ D I++N+
Sbjct: 36 RGDFLAYNQEEHPV---------------ALQFGGSNPKDLAHCAKLAQERGYDEINLNV 80
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
GCP + G +GA L + L+ V + V
Sbjct: 81 GCPSDRVQNGRFGACLMGEPDLVAECVAAMRAV 113
>gi|429771169|ref|ZP_19303199.1| tRNA dihydrouridine synthase A [Brevundimonas diminuta 470-4]
gi|429182388|gb|EKY23493.1| tRNA dihydrouridine synthase A [Brevundimonas diminuta 470-4]
Length = 331
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 164
LGF H +L G+D L EAAK+ E + D I++N+GCP + G +GA L
Sbjct: 41 LGFDAVEHPV--ALQLGGSDPAQLAEAAKIGEAYGYDEINLNVGCPSDRVQSGRFGACLM 98
Query: 165 DDWPLLTNLVYSPNMVHFVIAEPHC 189
+ L+ + + + V A C
Sbjct: 99 REPELVADCMAAIKEAVSVPATVKC 123
>gi|424658273|ref|ZP_18095531.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-16]
gi|408055444|gb|EKG90374.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-16]
Length = 316
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
RG + AY Q++ P+ +L F G++ K+L AKLA+ D I++N+
Sbjct: 36 RGDFLAYNQEEHPV---------------ALQFGGSNPKDLAHCAKLAQERGYDEINLNV 80
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
GCP + G +GA L + L+ V + V
Sbjct: 81 GCPSDRVQNGRFGACLMGEPDLVAECVAAMRAV 113
>gi|425078874|ref|ZP_18481977.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425089506|ref|ZP_18492599.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|425094197|ref|ZP_18497280.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|405589675|gb|EKB63240.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405599947|gb|EKB73122.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405610070|gb|EKB82895.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
Length = 313
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D + L + AKLAE D I++N+
Sbjct: 36 KGDYLAYSEEEHPVALQLG---------------GSDPQALAQCAKLAEARGYDEINLNV 80
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G +GA L + L+ + + +
Sbjct: 81 GCPSDRVQNGMFGACLMGNAQLVADCIKA 109
>gi|325292774|ref|YP_004278638.1| nitrogen regulation protein [Agrobacterium sp. H13-3]
gi|325060627|gb|ADY64318.1| nitrogen regulation protein [Agrobacterium sp. H13-3]
Length = 333
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 80 IGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH 139
+ ++VA RG + W L G M H + G ++ + EAAK+A +
Sbjct: 51 VASRELVANRG-------ESWARLKNAG------MVPHMVQLAGREAHFMAEAAKIAADN 97
Query: 140 CDGI-DINIGCPQMVAKRGHYGAYLQDD 166
GI DIN+GCP G+ G+ L D
Sbjct: 98 GAGIIDINMGCPAKKVTGGYSGSALMRD 125
>gi|291326742|ref|ZP_06125653.2| tRNA dihydrouridine synthase A [Providencia rettgeri DSM 1131]
gi|291313086|gb|EFE53539.1| tRNA dihydrouridine synthase A [Providencia rettgeri DSM 1131]
Length = 288
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y A+ +++ P+ +LG G+D L + AKLA+ D I++N+
Sbjct: 11 KGDYLAFSEEEHPVALQLG---------------GSDPAALAQCAKLAQERGYDEINLNV 55
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G +GA L D L+ + V +
Sbjct: 56 GCPSDRVQNGRFGACLMGDAQLVADCVKA 84
>gi|422908913|ref|ZP_16943571.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-09]
gi|341637207|gb|EGS61896.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE-09]
Length = 316
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
RG + AY Q++ P+ +L F G++ K+L AKLA+ D I++N+
Sbjct: 36 RGDFLAYNQEEHPV---------------ALQFGGSNPKDLAHCAKLAQERGYDEINLNV 80
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
GCP + G +GA L + L+ V + V
Sbjct: 81 GCPSDRVQNGRFGACLMGEPDLVAECVAAMRAV 113
>gi|300980481|ref|ZP_07175028.1| tRNA dihydrouridine synthase A [Escherichia coli MS 200-1]
gi|300992960|ref|ZP_07180115.1| tRNA dihydrouridine synthase A [Escherichia coli MS 45-1]
gi|422358341|ref|ZP_16439001.1| tRNA dihydrouridine synthase A [Escherichia coli MS 110-3]
gi|422365774|ref|ZP_16446264.1| tRNA dihydrouridine synthase A [Escherichia coli MS 153-1]
gi|422370722|ref|ZP_16451111.1| tRNA dihydrouridine synthase A [Escherichia coli MS 16-3]
gi|422380989|ref|ZP_16461160.1| tRNA dihydrouridine synthase A [Escherichia coli MS 57-2]
gi|300307783|gb|EFJ62303.1| tRNA dihydrouridine synthase A [Escherichia coli MS 200-1]
gi|300406734|gb|EFJ90272.1| tRNA dihydrouridine synthase A [Escherichia coli MS 45-1]
gi|315287860|gb|EFU47262.1| tRNA dihydrouridine synthase A [Escherichia coli MS 110-3]
gi|315291520|gb|EFU50880.1| tRNA dihydrouridine synthase A [Escherichia coli MS 153-1]
gi|315297520|gb|EFU56799.1| tRNA dihydrouridine synthase A [Escherichia coli MS 16-3]
gi|324007804|gb|EGB77023.1| tRNA dihydrouridine synthase A [Escherichia coli MS 57-2]
Length = 288
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 11 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 55
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G +GA L + L+ + V +
Sbjct: 56 GCPSDRVQNGMFGACLMGNAQLVADCVKA 84
>gi|329888317|ref|ZP_08266915.1| tRNA-dihydrouridine synthase A [Brevundimonas diminuta ATCC 11568]
gi|328846873|gb|EGF96435.1| tRNA-dihydrouridine synthase A [Brevundimonas diminuta ATCC 11568]
Length = 323
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 164
LGF H +L G+D L EAAK+ E + D I++N+GCP + G +GA L
Sbjct: 41 LGFDVVEHPV--ALQLGGSDPAQLAEAAKIGEAYGYDEINLNVGCPSDRVQSGKFGACLM 98
Query: 165 DDWPLLTNLVYSPNMVHFVIAEPHC 189
+ L+ + + + V A C
Sbjct: 99 REPELVADCMAAIKEAVSVPATVKC 123
>gi|238764115|ref|ZP_04625069.1| tRNA-dihydrouridine synthase A [Yersinia kristensenii ATCC 33638]
gi|238697652|gb|EEP90415.1| tRNA-dihydrouridine synthase A [Yersinia kristensenii ATCC 33638]
Length = 343
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 23/126 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY + D P+ +LG G+D + L AKLAE + I++N+
Sbjct: 62 KGDYLAYSEQDHPVALQLG---------------GSDPQALAHCAKLAEQRGYNEINLNV 106
Query: 148 GCPQMVAKRGHYGAYLQDDWPL-------LTNLVYSPNMVHFVIAEPHCDGNDINIGCPQ 200
GCP + G +GA L + L + ++V P V I D + Q
Sbjct: 107 GCPSDRVQNGRFGACLMAEANLVADCIKAMRDVVSIPVTVKTRIGIDELDSYEFLCEFVQ 166
Query: 201 MVAKRG 206
VA RG
Sbjct: 167 TVAGRG 172
>gi|262172527|ref|ZP_06040205.1| tRNA-dihydrouridine synthase [Vibrio mimicus MB-451]
gi|261893603|gb|EEY39589.1| tRNA-dihydrouridine synthase [Vibrio mimicus MB-451]
Length = 316
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
RG + AY Q++ P+ +L F G++ K+L AKLA+ D I++N+
Sbjct: 36 RGDFLAYNQEEHPV---------------ALQFGGSNPKDLAHCAKLAQERGYDEINLNV 80
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
GCP + G +GA L + L+ V + V
Sbjct: 81 GCPSDRVQNGRFGACLMAEPDLVAECVAAMRSV 113
>gi|213025593|ref|ZP_03340040.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 146
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|445266350|ref|ZP_21410112.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|444888233|gb|ELY11836.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
Length = 156
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|319407299|emb|CBI80940.1| tRNA-dihydrouridine synthase A [Bartonella sp. 1-1C]
Length = 331
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYL 163
L F H ++ G+D K L EAA++AE D I++N+GCP + G +GAYL
Sbjct: 62 LAFSDEEHPI--AIQLGGSDPKKLAEAARIAEDFGYDEINLNVGCPSDRVQAGIFGAYL 118
>gi|377579682|ref|ZP_09808646.1| tRNA-dihydrouridine synthase A [Escherichia hermannii NBRC 105704]
gi|377538999|dbj|GAB53811.1| tRNA-dihydrouridine synthase A [Escherichia hermannii NBRC 105704]
Length = 332
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|365846158|ref|ZP_09386663.1| tRNA dihydrouridine synthase A [Yokenella regensburgei ATCC 43003]
gi|364574270|gb|EHM51735.1| tRNA dihydrouridine synthase A [Yokenella regensburgei ATCC 43003]
Length = 332
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ PL +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPLALQLG---------------GSDPAALAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|417823509|ref|ZP_12470103.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE48]
gi|340048480|gb|EGR09400.1| tRNA dihydrouridine synthase A family protein [Vibrio cholerae
HE48]
Length = 316
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
RG + AY Q++ P+ +L F G++ K+L AKLA+ D I++N+
Sbjct: 36 RGDFLAYNQEEHPV---------------ALQFGGSNPKDLAHCAKLAQERGYDEINLNV 80
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
GCP + G +GA L + L+ V + V
Sbjct: 81 GCPSDRVQNGRFGACLMAEPDLVAECVAAMRSV 113
>gi|258625982|ref|ZP_05720847.1| NifR3/Smm1 family protein [Vibrio mimicus VM603]
gi|258581730|gb|EEW06614.1| NifR3/Smm1 family protein [Vibrio mimicus VM603]
Length = 339
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
RG + AY Q++ P+ +L F G++ K+L AKLA+ D I++N+
Sbjct: 59 RGDFLAYNQEEHPV---------------ALQFGGSNPKDLAHCAKLAQERGYDEINLNV 103
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
GCP + G +GA L + L+ V + V
Sbjct: 104 GCPSDRVQNGRFGACLMAEPDLVAECVAAMRSV 136
>gi|157963384|ref|YP_001503418.1| tRNA-dihydrouridine synthase A [Shewanella pealeana ATCC 700345]
gi|157848384|gb|ABV88883.1| TIM-barrel protein, yjbN family [Shewanella pealeana ATCC 700345]
Length = 328
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINI 147
RG Y AY Q++ PL +LG G++ +L AKLA E D I++N+
Sbjct: 50 RGDYLAYNQEEHPLALQLG---------------GSNPVDLAACAKLAAERGYDEINLNV 94
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
GCP + G +GA L + L+ V + V
Sbjct: 95 GCPSDRVQNGRFGACLMAEPELVAECVTAMKQV 127
>gi|417338088|ref|ZP_12120025.1| tRNA dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Alachua str. R6-377]
gi|353562482|gb|EHC29110.1| tRNA dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Alachua str. R6-377]
Length = 193
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|424811155|ref|ZP_18236471.1| tRNA-dihydrouridine synthase A [Vibrio mimicus SX-4]
gi|342321786|gb|EGU17587.1| tRNA-dihydrouridine synthase A [Vibrio mimicus SX-4]
Length = 316
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
RG + AY Q++ P+ +L F G++ K+L AKLA+ D I++N+
Sbjct: 36 RGDFLAYNQEEHPV---------------ALQFGGSNPKDLAHCAKLAQERGYDEINLNV 80
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
GCP + G +GA L + L+ V + V
Sbjct: 81 GCPSDRVQNGRFGACLMAEPDLVAECVAAMRSV 113
>gi|19921524|ref|NP_609939.1| CG10495 [Drosophila melanogaster]
gi|7298533|gb|AAF53752.1| CG10495 [Drosophila melanogaster]
gi|17862030|gb|AAL39492.1| LD05576p [Drosophila melanogaster]
gi|220942934|gb|ACL84010.1| CG10495-PA [synthetic construct]
gi|220953160|gb|ACL89123.1| CG10495-PA [synthetic construct]
Length = 396
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
F D +A+L P+ DGID+N GCPQ A YG ++ P +V
Sbjct: 84 FAAKDPTEFVTSAQLIYPYVDGIDLNCGCPQSWAMAKGYGC----------GMLRQPELV 133
Query: 181 HFVIAE 186
H V+ E
Sbjct: 134 HQVVQE 139
>gi|115372138|ref|ZP_01459449.1| tRNA-dihydrouridine synthase A [Stigmatella aurantiaca DW4/3-1]
gi|115370840|gb|EAU69764.1| tRNA-dihydrouridine synthase A [Stigmatella aurantiaca DW4/3-1]
Length = 330
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 93 GAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQ 151
GA L D L LGF+ H +L G++ L EAA++ E D I++N+GCP
Sbjct: 29 GAVLHGDRDRL--LGFEPAEHPV--ALQLGGSEPAALAEAARIGEAWGYDEINLNVGCPS 84
Query: 152 MVAKRGHYGAYLQDDWPLLTNLVYS 176
+ G +GA L + L+ LV +
Sbjct: 85 DRVQSGRFGACLMAEPELVARLVAA 109
>gi|420376104|ref|ZP_14875894.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
1235-66]
gi|391307140|gb|EIQ64879.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
1235-66]
Length = 332
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|418040056|ref|ZP_12678308.1| TIM-barrel protein, yjbN family [Escherichia coli W26]
gi|383477038|gb|EID68965.1| TIM-barrel protein, yjbN family [Escherichia coli W26]
Length = 301
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 24 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 68
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 69 GCPSDRVQNGMFGACLMGNAQLVADCV 95
>gi|418296228|ref|ZP_12908072.1| tRNA-dihydrouridine synthase protein [Agrobacterium tumefaciens
CCNWGS0286]
gi|355539660|gb|EHH08898.1| tRNA-dihydrouridine synthase protein [Agrobacterium tumefaciens
CCNWGS0286]
Length = 338
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 80 IGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH 139
+ ++VA RG + W L G M H + G ++ + EAAK+A +
Sbjct: 56 VASRELVANRG-------ESWARLKNAG------MVPHMVQLAGREAHFMAEAAKIAADN 102
Query: 140 CDGI-DINIGCPQMVAKRGHYGAYLQDD 166
GI DIN+GCP G+ G+ L D
Sbjct: 103 GAGIIDINMGCPAKKVTGGYSGSALMRD 130
>gi|291086669|ref|ZP_06356403.2| tRNA-dihydrouridine synthase A [Citrobacter youngae ATCC 29220]
gi|291067402|gb|EFE05511.1| tRNA-dihydrouridine synthase A [Citrobacter youngae ATCC 29220]
Length = 313
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 16/91 (17%)
Query: 85 MVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGI 143
+V +G Y AY +++ P+ +LG G+D L + AKLAE D I
Sbjct: 32 IVHGKGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEQRGYDEI 76
Query: 144 DINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
++N+GCP + G +GA L + L+ + V
Sbjct: 77 NLNVGCPSDRVQNGMFGACLMGNAQLVADCV 107
>gi|195345007|ref|XP_002039067.1| GM17321 [Drosophila sechellia]
gi|194134197|gb|EDW55713.1| GM17321 [Drosophila sechellia]
Length = 316
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 25/89 (28%)
Query: 98 DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRG 157
DD PL+ + F D +A+L P+ DGID+N GCPQ A
Sbjct: 76 DDQPLIAQ---------------FAAKDPTEFVTSAQLIYPYVDGIDLNCGCPQSWAMAK 120
Query: 158 HYGAYLQDDWPLLTNLVYSPNMVHFVIAE 186
YG ++ P +VH V+ E
Sbjct: 121 GYGC----------GMLRQPELVHQVVQE 139
>gi|118082094|ref|XP_001231915.1| PREDICTED: tRNA-dihydrouridine synthase 4-like isoform 1 [Gallus
gallus]
Length = 317
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F +++ L +AA L P DG+D+N GCPQ A YGA L + L+ ++V
Sbjct: 84 VQFAAKEAQVLCDAALLVCPFADGVDLNCGCPQRWAMAEGYGACLINKPELVRDMV 139
>gi|453082951|gb|EMF10997.1| FMN-linked oxidoreductase [Mycosphaerella populorum SO2202]
Length = 367
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
F + AA++ P DGID+N GCPQ A + G LQD L+ +V +
Sbjct: 129 FAASSPLEFARAAEMIAPWVDGIDLNCGCPQSWAIQSGIGCALQDSPSLVAEMVRA 184
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 49 VVHFSWVSKNGPL-FMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL- 106
VV + + + PL F + P DGID+N GCPQ A + G LQD L+ E+
Sbjct: 123 VVIIAQFAASSPLEFARAAEMIAPWVDGIDLNCGCPQSWAIQSGIGCALQDSPSLVAEMV 182
Query: 107 -GFKTRSHMCGHSL 119
KTR G S+
Sbjct: 183 RAAKTRVGKWGKSV 196
>gi|417860134|ref|ZP_12505190.1| nitrogen regulation protein [Agrobacterium tumefaciens F2]
gi|338823198|gb|EGP57166.1| nitrogen regulation protein [Agrobacterium tumefaciens F2]
Length = 308
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 80 IGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH 139
+ ++VA RG + W L G M H + G ++ + EAAK+A +
Sbjct: 26 VASRELVANRG-------ESWARLKNAG------MVPHMVQLAGREAHFMAEAAKIAADN 72
Query: 140 CDGI-DINIGCPQMVAKRGHYGAYLQDD 166
GI DIN+GCP G+ G+ L D
Sbjct: 73 GAGIIDINMGCPAKKVTGGYSGSALMRD 100
>gi|416338796|ref|ZP_11674797.1| tRNA dihydrouridine synthase A [Escherichia coli WV_060327]
gi|432799971|ref|ZP_20033970.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE84]
gi|320193408|gb|EFW68045.1| tRNA dihydrouridine synthase A [Escherichia coli WV_060327]
gi|431353327|gb|ELG40081.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE84]
Length = 331
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 99 GCPSDRVQNGMFGACLMGNAQLVADCV 125
>gi|262163875|ref|ZP_06031615.1| tRNA-dihydrouridine synthase [Vibrio mimicus VM223]
gi|262027855|gb|EEY46520.1| tRNA-dihydrouridine synthase [Vibrio mimicus VM223]
Length = 335
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
RG + AY Q++ P+ +L F G++ K+L AKLA+ D I++N+
Sbjct: 55 RGDFLAYNQEEHPV---------------ALQFGGSNPKDLAHCAKLAQERGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
GCP + G +GA L + L+ V + V
Sbjct: 100 GCPSDRVQNGRFGACLMAEPDLVAECVAAMRSV 132
>gi|258622397|ref|ZP_05717420.1| NifR3/Smm1 family protein [Vibrio mimicus VM573]
gi|258585311|gb|EEW10037.1| NifR3/Smm1 family protein [Vibrio mimicus VM573]
Length = 339
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
RG + AY Q++ P+ +L F G++ K+L AKLA+ D I++N+
Sbjct: 59 RGDFLAYNQEEHPV---------------ALQFGGSNPKDLAHCAKLAQERGYDEINLNV 103
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
GCP + G +GA L + L+ V + V
Sbjct: 104 GCPSDRVQNGRFGACLMAEPDLVAECVAAMRSV 136
>gi|146291866|ref|YP_001182290.1| tRNA-dihydrouridine synthase A [Shewanella putrefaciens CN-32]
gi|145563556|gb|ABP74491.1| TIM-barrel protein, yjbN family [Shewanella putrefaciens CN-32]
Length = 343
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINI 147
RG Y AY Q++ PL +LG G++ ++L AKLA E D +++N+
Sbjct: 65 RGDYLAYNQEEHPLALQLG---------------GSNPQDLARCAKLAAERGYDEVNLNV 109
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ V
Sbjct: 110 GCPSDRVQNGRFGACLMAEPDLVAECV 136
>gi|418406928|ref|ZP_12980247.1| tRNA-dihydrouridine synthase protein [Agrobacterium tumefaciens 5A]
gi|358007421|gb|EHJ99744.1| tRNA-dihydrouridine synthase protein [Agrobacterium tumefaciens 5A]
Length = 308
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 80 IGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH 139
+ ++VA RG + W L G M H + G ++ + EAAK+A +
Sbjct: 26 VASRELVANRG-------ESWARLKNAG------MVPHMVQLAGREAHFMAEAAKIAADN 72
Query: 140 CDGI-DINIGCPQMVAKRGHYGAYLQDD 166
GI DIN+GCP G+ G+ L D
Sbjct: 73 GAGIIDINMGCPAKKVTGGYSGSALMRD 100
>gi|253991388|ref|YP_003042744.1| tRNA-dihydrouridine synthase A [Photorhabdus asymbiotica]
gi|253782838|emb|CAQ86003.1| tRNA-dihydrouridine synthase A [Photorhabdus asymbiotica]
Length = 341
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G+Y AY +++ PL +LG G+D + L AK+A+ D I++N+
Sbjct: 64 KGNYLAYNEEEHPLALQLG---------------GSDPQALAHCAKIAQERGYDEINLNV 108
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 109 GCPSDRVQNGRFGACLMGEAKLVADCV 135
>gi|384219832|ref|YP_005610998.1| hypothetical protein BJ6T_61560 [Bradyrhizobium japonicum USDA 6]
gi|354958731|dbj|BAL11410.1| hypothetical protein BJ6T_61560 [Bradyrhizobium japonicum USDA 6]
Length = 319
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 93 GAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQ 151
GA + D L LGF H +L G+D + L +AA++ E D I++N+GCP
Sbjct: 30 GAIIHGDRERL--LGFDAVEHPV--ALQLGGSDPRELAQAARIGEEFGYDEINLNVGCPS 85
Query: 152 MVAKRGHYGAYLQDDWPLLTNLV 174
K G +GA L + L+ V
Sbjct: 86 DRVKDGRFGACLMAEPELVARCV 108
>gi|429082481|ref|ZP_19145549.1| tRNA dihydrouridine synthase A [Cronobacter condimenti 1330]
gi|426548749|emb|CCJ71590.1| tRNA dihydrouridine synthase A [Cronobacter condimenti 1330]
Length = 313
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 16/85 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 36 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 80
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTN 172
GCP + G +GA L + L+ +
Sbjct: 81 GCPSDRVQNGRFGACLMGEAQLVAD 105
>gi|429106337|ref|ZP_19168206.1| tRNA dihydrouridine synthase A [Cronobacter malonaticus 681]
gi|426293060|emb|CCJ94319.1| tRNA dihydrouridine synthase A [Cronobacter malonaticus 681]
Length = 331
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAHCAKLAEERGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G +GA L + L+ + V +
Sbjct: 99 GCPSDRVQNGRFGACLMGEAQLVADCVRA 127
>gi|424818607|ref|ZP_18243758.1| tRNA-dihydrouridine synthase A [Escherichia fergusonii ECD227]
gi|325499627|gb|EGC97486.1| tRNA-dihydrouridine synthase A [Escherichia fergusonii ECD227]
Length = 331
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 99 GCPSDRVQNGMFGACLMGNAQLVADCV 125
>gi|118082096|ref|XP_001231946.1| PREDICTED: tRNA-dihydrouridine synthase 4-like isoform 2 [Gallus
gallus]
Length = 301
Score = 40.4 bits (93), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F +++ L +AA L P DG+D+N GCPQ A YGA L + L+ ++V
Sbjct: 84 VQFAAKEAQVLCDAALLVCPFADGVDLNCGCPQRWAMAEGYGACLINKPELVRDMV 139
>gi|403165575|ref|XP_003325561.2| hypothetical protein PGTG_07394 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375165780|gb|EFP81142.2| hypothetical protein PGTG_07394 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 310
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 26/133 (19%)
Query: 44 LLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 103
L++E H ++ P+ +A+ C + G +L + PL+
Sbjct: 12 LVSEYETHITFT---------PMILAQEFC--LSAKARDSDFSTNAAERGIFLMQESPLV 60
Query: 104 TELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 163
+ G GH + G+ AA L + + DGIDIN GCPQ A + G+ L
Sbjct: 61 AQFG--------GHDPFYMGH-------AAALIKKYVDGIDINCGCPQQWAYKEGIGSAL 105
Query: 164 QDDWPLLTNLVYS 176
L+ LV S
Sbjct: 106 LRKPDLVRELVRS 118
>gi|331655869|ref|ZP_08356857.1| tRNA-dihydrouridine synthase A [Escherichia coli M718]
gi|331046223|gb|EGI18313.1| tRNA-dihydrouridine synthase A [Escherichia coli M718]
Length = 345
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|415785370|ref|ZP_11492920.1| tRNA-dihydrouridine synthase A [Escherichia coli EPECa14]
gi|323155612|gb|EFZ41787.1| tRNA-dihydrouridine synthase A [Escherichia coli EPECa14]
Length = 347
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 70 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 114
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 115 GCPSDRVQNGMFGACLMGNTQLVADCV 141
>gi|218463688|ref|ZP_03503779.1| tRNA-dihydrouridine synthase A [Rhizobium etli Kim 5]
Length = 333
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 111 RSHMCGH-------SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAY 162
R + GH +L G+D L EA K+AEP+ D I++N+GCP + G +GA
Sbjct: 49 RERLLGHDVAEHPLALQLGGSDPGKLAEAVKIAEPYGYDEINLNVGCPSDRVQSGTFGAC 108
Query: 163 L 163
L
Sbjct: 109 L 109
>gi|218551359|ref|YP_002385151.1| tRNA-dihydrouridine synthase A [Escherichia fergusonii ATCC 35469]
gi|218358901|emb|CAQ91560.1| tRNA-dihydrouridine synthase A [Escherichia fergusonii ATCC 35469]
Length = 331
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 99 GCPSDRVQNGMFGACLMGNAQLVADCV 125
>gi|416802331|ref|ZP_11886116.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H- str. H
2687]
gi|320649492|gb|EFX18016.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H- str. H
2687]
Length = 339
Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 62 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 106
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 107 GCPSDRVQNGMFGACLMGNAQLVADCV 133
>gi|432790833|ref|ZP_20024951.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE78]
gi|432796823|ref|ZP_20030853.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE79]
gi|431344148|gb|ELG31102.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE78]
gi|431346808|gb|ELG33702.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE79]
Length = 345
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|428165461|gb|EKX34455.1| hypothetical protein GUITHDRAFT_61641, partial [Guillardia theta
CCMP2712]
Length = 245
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 18 IDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
+++N+GCPQ AK+G YGA+L + LL E V
Sbjct: 94 VELNVGCPQRCAKKGGYGAFLMEKRELLAECV 125
Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 143 IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+++N+GCPQ AK+G YGA+L + LL V S
Sbjct: 94 VELNVGCPQRCAKKGGYGAFLMEKRELLAECVRS 127
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 76 IDINIGCPQMVAKRGHYGAYLQDDWPLLTE 105
+++N+GCPQ AK+G YGA+L + LL E
Sbjct: 94 VELNVGCPQRCAKKGGYGAFLMEKRELLAE 123
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 193 DINIGCPQMVAKRGHYGAYLQDDWPLLTE 221
++N+GCPQ AK+G YGA+L + LL E
Sbjct: 95 ELNVGCPQRCAKKGGYGAFLMEKRELLAE 123
>gi|82779541|ref|YP_405890.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae Sd197]
gi|81243689|gb|ABB64399.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
Length = 345
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|301046994|ref|ZP_07194104.1| tRNA dihydrouridine synthase A [Escherichia coli MS 185-1]
gi|415838167|ref|ZP_11520150.1| tRNA-dihydrouridine synthase A [Escherichia coli RN587/1]
gi|425302971|ref|ZP_18692844.1| tRNA-dihydrouridine synthase A [Escherichia coli 07798]
gi|442605866|ref|ZP_21020680.1| tRNA dihydrouridine synthase A [Escherichia coli Nissle 1917]
gi|300301082|gb|EFJ57467.1| tRNA dihydrouridine synthase A [Escherichia coli MS 185-1]
gi|323190088|gb|EFZ75366.1| tRNA-dihydrouridine synthase A [Escherichia coli RN587/1]
gi|408209754|gb|EKI34338.1| tRNA-dihydrouridine synthase A [Escherichia coli 07798]
gi|441713128|emb|CCQ06657.1| tRNA dihydrouridine synthase A [Escherichia coli Nissle 1917]
Length = 313
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 36 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 80
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 81 GCPSDRVQNGMFGACLMGNAQLVADCV 107
>gi|218702713|ref|YP_002410342.1| tRNA-dihydrouridine synthase A [Escherichia coli IAI39]
gi|386626991|ref|YP_006146719.1| tRNA-dihydrouridine synthase A [Escherichia coli O7:K1 str. CE10]
gi|218372699|emb|CAR20575.1| tRNA-dihydrouridine synthase A [Escherichia coli IAI39]
gi|349740727|gb|AEQ15433.1| tRNA-dihydrouridine synthase A [Escherichia coli O7:K1 str. CE10]
Length = 345
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|195580071|ref|XP_002079879.1| GD24181 [Drosophila simulans]
gi|194191888|gb|EDX05464.1| GD24181 [Drosophila simulans]
Length = 396
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
F D +A+L P+ DGID+N GCPQ A YG ++ P +V
Sbjct: 84 FAAKDPTEFVTSAQLIYPYVDGIDLNCGCPQSWAMAKGYGC----------GMLRQPELV 133
Query: 181 HFVIAE 186
H V+ E
Sbjct: 134 HQVVQE 139
>gi|157157144|ref|YP_001465549.1| tRNA-dihydrouridine synthase A [Escherichia coli E24377A]
gi|157163519|ref|YP_001460837.1| tRNA-dihydrouridine synthase A [Escherichia coli HS]
gi|417642085|ref|ZP_12292207.1| tRNA-dihydrouridine synthase A [Escherichia coli TX1999]
gi|157069199|gb|ABV08454.1| tRNA-dihydrouridine synthase A [Escherichia coli HS]
gi|157079174|gb|ABV18882.1| tRNA-dihydrouridine synthase A [Escherichia coli E24377A]
gi|345389602|gb|EGX19407.1| tRNA-dihydrouridine synthase A [Escherichia coli TX1999]
Length = 347
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 70 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 114
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 115 GCPSDRVQNGMFGACLMGNAQLVADCV 141
>gi|432443665|ref|ZP_19685986.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE189]
gi|432448740|ref|ZP_19691034.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE191]
gi|433016399|ref|ZP_20204716.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE104]
gi|433025981|ref|ZP_20213940.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE106]
gi|433326392|ref|ZP_20403233.1| tRNA-dihydrouridine synthase A [Escherichia coli J96]
gi|450196390|ref|ZP_21892861.1| tRNA-dihydrouridine synthase A [Escherichia coli SEPT362]
gi|430960263|gb|ELC78419.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE189]
gi|430970425|gb|ELC87497.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE191]
gi|431525308|gb|ELI02105.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE104]
gi|431529138|gb|ELI05841.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE106]
gi|432345486|gb|ELL39989.1| tRNA-dihydrouridine synthase A [Escherichia coli J96]
gi|449315504|gb|EMD05646.1| tRNA-dihydrouridine synthase A [Escherichia coli SEPT362]
Length = 331
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 99 GCPSDRVQNGMFGACLMGNAQLVADCV 125
>gi|422829122|ref|ZP_16877290.1| tRNA-dihydrouridine synthase A [Escherichia coli B093]
gi|371610279|gb|EHN98808.1| tRNA-dihydrouridine synthase A [Escherichia coli B093]
Length = 345
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|260858159|ref|YP_003232050.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
11368]
gi|419263959|ref|ZP_13806360.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10B]
gi|419270071|ref|ZP_13812410.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10C]
gi|419275438|ref|ZP_13817720.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10D]
gi|419287034|ref|ZP_13829188.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10F]
gi|425382459|ref|ZP_18766425.1| tRNA-dihydrouridine synthase [Escherichia coli EC1865]
gi|432677230|ref|ZP_19912667.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE142]
gi|257756808|dbj|BAI28310.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
11368]
gi|378100726|gb|EHW62418.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10B]
gi|378105988|gb|EHW67624.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10C]
gi|378111959|gb|EHW73540.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10D]
gi|378123875|gb|EHW85291.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10F]
gi|408292570|gb|EKJ11081.1| tRNA-dihydrouridine synthase [Escherichia coli EC1865]
gi|431209328|gb|ELF07437.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE142]
Length = 345
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNTQLVADCV 139
>gi|26250830|ref|NP_756870.1| tRNA-dihydrouridine synthase A [Escherichia coli CFT073]
gi|91213570|ref|YP_543556.1| tRNA-dihydrouridine synthase A [Escherichia coli UTI89]
gi|110644384|ref|YP_672114.1| tRNA-dihydrouridine synthase A [Escherichia coli 536]
gi|117626314|ref|YP_859637.1| tRNA-dihydrouridine synthase A [Escherichia coli APEC O1]
gi|191172024|ref|ZP_03033569.1| tRNA-dihydrouridine synthase A [Escherichia coli F11]
gi|215489385|ref|YP_002331816.1| tRNA-dihydrouridine synthase A [Escherichia coli O127:H6 str.
E2348/69]
gi|218561117|ref|YP_002394030.1| tRNA-dihydrouridine synthase A [Escherichia coli S88]
gi|218692332|ref|YP_002400544.1| tRNA-dihydrouridine synthase A [Escherichia coli ED1a]
gi|222158756|ref|YP_002558895.1| tRNA-dihydrouridine synthase A [Escherichia coli LF82]
gi|227886947|ref|ZP_04004752.1| tRNA-dihydrouridine synthase A [Escherichia coli 83972]
gi|237703603|ref|ZP_04534084.1| tRNA-dihydrouridine synthase A [Escherichia sp. 3_2_53FAA]
gi|306815840|ref|ZP_07449985.1| tRNA-dihydrouridine synthase A [Escherichia coli NC101]
gi|331660615|ref|ZP_08361547.1| tRNA-dihydrouridine synthase A [Escherichia coli TA206]
gi|386602090|ref|YP_006103596.1| tRNA-dihydrouridine synthase A [Escherichia coli IHE3034]
gi|386606612|ref|YP_006112912.1| tRNA-dihydrouridine synthase A [Escherichia coli UM146]
gi|386621742|ref|YP_006141322.1| tRNA dihydrouridine synthase A [Escherichia coli NA114]
gi|386632022|ref|YP_006151742.1| tRNA-dihydrouridine synthase A [Escherichia coli str. 'clone D i2']
gi|386636942|ref|YP_006156661.1| tRNA-dihydrouridine synthase A [Escherichia coli str. 'clone D
i14']
gi|386641700|ref|YP_006108498.1| tRNA-dihydrouridine synthase A [Escherichia coli ABU 83972]
gi|387619365|ref|YP_006122387.1| tRNA-dihydrouridine synthase A [Escherichia coli O83:H1 str. NRG
857C]
gi|387831956|ref|YP_003351893.1| hypothetical protein ECSF_3903 [Escherichia coli SE15]
gi|417088162|ref|ZP_11954891.1| tRNA-dihydrouridine synthase A [Escherichia coli cloneA_i1]
gi|417287891|ref|ZP_12075177.1| tRNA dihydrouridine synthase A [Escherichia coli TW07793]
gi|417664694|ref|ZP_12314273.1| tRNA dihydrouridine synthase A [Escherichia coli AA86]
gi|419702916|ref|ZP_14230498.1| tRNA-dihydrouridine synthase A [Escherichia coli SCI-07]
gi|419913185|ref|ZP_14431627.1| tRNA-dihydrouridine synthase A [Escherichia coli KD1]
gi|419943137|ref|ZP_14459707.1| tRNA-dihydrouridine synthase A [Escherichia coli HM605]
gi|422751074|ref|ZP_16804984.1| tRNA dihydrouridine synthase A [Escherichia coli H252]
gi|422757189|ref|ZP_16811010.1| tRNA dihydrouridine synthase A [Escherichia coli H263]
gi|422840511|ref|ZP_16888482.1| tRNA-dihydrouridine synthase A [Escherichia coli H397]
gi|425280507|ref|ZP_18671715.1| tRNA-dihydrouridine synthase A [Escherichia coli ARS4.2123]
gi|432360522|ref|ZP_19603729.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE4]
gi|432365322|ref|ZP_19608471.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE5]
gi|432383964|ref|ZP_19626884.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE15]
gi|432384979|ref|ZP_19627884.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE16]
gi|432395454|ref|ZP_19638250.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE25]
gi|432409140|ref|ZP_19651838.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE28]
gi|432419670|ref|ZP_19662233.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE178]
gi|432429809|ref|ZP_19672261.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE187]
gi|432439028|ref|ZP_19681400.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE188]
gi|432454298|ref|ZP_19696515.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE201]
gi|432468458|ref|ZP_19710529.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE205]
gi|432473417|ref|ZP_19715450.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE206]
gi|432502626|ref|ZP_19744371.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE216]
gi|432506961|ref|ZP_19748675.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE220]
gi|432516455|ref|ZP_19753666.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE224]
gi|432526543|ref|ZP_19763651.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE230]
gi|432556581|ref|ZP_19793283.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE49]
gi|432566482|ref|ZP_19803018.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE53]
gi|432571368|ref|ZP_19807864.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE55]
gi|432580849|ref|ZP_19817270.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE57]
gi|432585834|ref|ZP_19822212.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE58]
gi|432590647|ref|ZP_19826984.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE60]
gi|432595351|ref|ZP_19831649.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE62]
gi|432605507|ref|ZP_19841712.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE67]
gi|432648737|ref|ZP_19884518.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE86]
gi|432653723|ref|ZP_19889458.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE87]
gi|432658305|ref|ZP_19893997.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE93]
gi|432696934|ref|ZP_19932121.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE162]
gi|432701581|ref|ZP_19936721.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE169]
gi|432708455|ref|ZP_19943527.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE6]
gi|432715923|ref|ZP_19950944.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE8]
gi|432721212|ref|ZP_19956145.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE17]
gi|432725610|ref|ZP_19960516.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE18]
gi|432730372|ref|ZP_19965236.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE45]
gi|432739392|ref|ZP_19974116.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE23]
gi|432748040|ref|ZP_19982698.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE43]
gi|432757024|ref|ZP_19991564.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE22]
gi|432761921|ref|ZP_19996390.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE46]
gi|432776393|ref|ZP_20010654.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE59]
gi|432781392|ref|ZP_20015599.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE63]
gi|432790092|ref|ZP_20024216.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE65]
gi|432818859|ref|ZP_20052577.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE118]
gi|432824988|ref|ZP_20058649.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE123]
gi|432841898|ref|ZP_20075340.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE141]
gi|432891895|ref|ZP_20104374.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE165]
gi|432896081|ref|ZP_20107358.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE192]
gi|432908008|ref|ZP_20116270.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE194]
gi|432941090|ref|ZP_20138784.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE183]
gi|432969653|ref|ZP_20158546.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE207]
gi|432976292|ref|ZP_20165121.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE209]
gi|432978938|ref|ZP_20167733.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE211]
gi|432987914|ref|ZP_20176620.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE215]
gi|432988561|ref|ZP_20177237.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE217]
gi|432993273|ref|ZP_20181900.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE218]
gi|432997732|ref|ZP_20186308.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE223]
gi|433003009|ref|ZP_20191513.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE227]
gi|433010268|ref|ZP_20198676.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE229]
gi|433031017|ref|ZP_20218853.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE109]
gi|433041086|ref|ZP_20228666.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE113]
gi|433060598|ref|ZP_20247621.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE124]
gi|433075407|ref|ZP_20262033.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE129]
gi|433080280|ref|ZP_20266789.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE131]
gi|433084999|ref|ZP_20271436.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE133]
gi|433089802|ref|ZP_20276152.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE137]
gi|433098903|ref|ZP_20285061.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE139]
gi|433103672|ref|ZP_20289732.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE145]
gi|433108334|ref|ZP_20294285.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE148]
gi|433113347|ref|ZP_20299186.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE150]
gi|433118006|ref|ZP_20303777.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE153]
gi|433122736|ref|ZP_20308383.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE157]
gi|433127708|ref|ZP_20313240.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE160]
gi|433141781|ref|ZP_20327010.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE167]
gi|433146709|ref|ZP_20331831.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE168]
gi|433151733|ref|ZP_20336721.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE174]
gi|433156303|ref|ZP_20341220.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE176]
gi|433166089|ref|ZP_20350807.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE179]
gi|433171087|ref|ZP_20355695.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE180]
gi|433185864|ref|ZP_20370089.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE85]
gi|433190879|ref|ZP_20374956.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE88]
gi|433200840|ref|ZP_20384713.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE94]
gi|433210269|ref|ZP_20393923.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE97]
gi|433215106|ref|ZP_20398670.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE99]
gi|38604877|sp|Q8FB30.1|DUSA_ECOL6 RecName: Full=tRNA-dihydrouridine synthase A
gi|26111261|gb|AAN83444.1|AE016770_244 Hypothetical protein yjbN [Escherichia coli CFT073]
gi|91075144|gb|ABE10025.1| hypothetical protein YjbN [Escherichia coli UTI89]
gi|110345976|gb|ABG72213.1| hypothetical protein YjbN (putative tRNA-dihydrouridine synthase)
[Escherichia coli 536]
gi|115515438|gb|ABJ03513.1| tRNA-dihydrouridine synthase A [Escherichia coli APEC O1]
gi|190907789|gb|EDV67383.1| tRNA-dihydrouridine synthase A [Escherichia coli F11]
gi|215267457|emb|CAS11910.1| tRNA-dihydrouridine synthase A [Escherichia coli O127:H6 str.
E2348/69]
gi|218367886|emb|CAR05681.1| tRNA-dihydrouridine synthase A [Escherichia coli S88]
gi|218429896|emb|CAR10723.1| tRNA-dihydrouridine synthase A [Escherichia coli ED1a]
gi|222035761|emb|CAP78506.1| tRNA-dihydrouridine synthase A [Escherichia coli LF82]
gi|226901515|gb|EEH87774.1| tRNA-dihydrouridine synthase A [Escherichia sp. 3_2_53FAA]
gi|227836088|gb|EEJ46554.1| tRNA-dihydrouridine synthase A [Escherichia coli 83972]
gi|281181113|dbj|BAI57443.1| conserved hypothetical protein [Escherichia coli SE15]
gi|294489479|gb|ADE88235.1| tRNA-dihydrouridine synthase A [Escherichia coli IHE3034]
gi|305850815|gb|EFM51271.1| tRNA-dihydrouridine synthase A [Escherichia coli NC101]
gi|307556192|gb|ADN48967.1| tRNA-dihydrouridine synthase A [Escherichia coli ABU 83972]
gi|307629096|gb|ADN73400.1| tRNA-dihydrouridine synthase A [Escherichia coli UM146]
gi|312948626|gb|ADR29453.1| tRNA-dihydrouridine synthase A [Escherichia coli O83:H1 str. NRG
857C]
gi|323950409|gb|EGB46290.1| tRNA dihydrouridine synthase A [Escherichia coli H252]
gi|323954491|gb|EGB50275.1| tRNA dihydrouridine synthase A [Escherichia coli H263]
gi|330908368|gb|EGH36887.1| tRNA dihydrouridine synthase A [Escherichia coli AA86]
gi|331051657|gb|EGI23696.1| tRNA-dihydrouridine synthase A [Escherichia coli TA206]
gi|333972243|gb|AEG39048.1| tRNA dihydrouridine synthase A [Escherichia coli NA114]
gi|355349206|gb|EHF98415.1| tRNA-dihydrouridine synthase A [Escherichia coli cloneA_i1]
gi|355422921|gb|AER87118.1| tRNA-dihydrouridine synthase A [Escherichia coli str. 'clone D i2']
gi|355427841|gb|AER92037.1| tRNA-dihydrouridine synthase A [Escherichia coli str. 'clone D
i14']
gi|371606200|gb|EHN94798.1| tRNA-dihydrouridine synthase A [Escherichia coli H397]
gi|380345931|gb|EIA34237.1| tRNA-dihydrouridine synthase A [Escherichia coli SCI-07]
gi|386248676|gb|EII94848.1| tRNA dihydrouridine synthase A [Escherichia coli TW07793]
gi|388390010|gb|EIL51513.1| tRNA-dihydrouridine synthase A [Escherichia coli KD1]
gi|388421812|gb|EIL81413.1| tRNA-dihydrouridine synthase A [Escherichia coli HM605]
gi|408196580|gb|EKI21859.1| tRNA-dihydrouridine synthase A [Escherichia coli ARS4.2123]
gi|430872230|gb|ELB95844.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE4]
gi|430882587|gb|ELC05666.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE5]
gi|430902607|gb|ELC24464.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE15]
gi|430911578|gb|ELC32859.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE16]
gi|430919738|gb|ELC40659.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE25]
gi|430925616|gb|ELC46282.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE28]
gi|430948977|gb|ELC68558.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE178]
gi|430958081|gb|ELC76679.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE187]
gi|430959226|gb|ELC77560.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE188]
gi|430987409|gb|ELD03948.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE201]
gi|430989354|gb|ELD05810.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE205]
gi|430994902|gb|ELD11214.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE206]
gi|431025256|gb|ELD38367.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE216]
gi|431034284|gb|ELD46225.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE220]
gi|431037366|gb|ELD48352.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE224]
gi|431046760|gb|ELD56853.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE230]
gi|431095821|gb|ELE01422.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE49]
gi|431104526|gb|ELE08901.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE53]
gi|431112847|gb|ELE16528.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE55]
gi|431124246|gb|ELE26898.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE57]
gi|431125135|gb|ELE27565.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE58]
gi|431134773|gb|ELE36716.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE60]
gi|431135289|gb|ELE37204.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE62]
gi|431143486|gb|ELE45211.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE67]
gi|431177078|gb|ELE77016.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE86]
gi|431186358|gb|ELE85920.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE87]
gi|431186944|gb|ELE86476.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE93]
gi|431229533|gb|ELF26177.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE162]
gi|431239218|gb|ELF33863.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE169]
gi|431250335|gb|ELF44396.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE8]
gi|431254028|gb|ELF47504.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE6]
gi|431269735|gb|ELF61040.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE17]
gi|431278346|gb|ELF69339.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE18]
gi|431279632|gb|ELF70586.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE45]
gi|431287423|gb|ELF78233.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE23]
gi|431288818|gb|ELF79574.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE43]
gi|431298492|gb|ELF88117.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE22]
gi|431304244|gb|ELF92776.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE46]
gi|431333140|gb|ELG20355.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE59]
gi|431333524|gb|ELG20711.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE63]
gi|431334325|gb|ELG21487.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE65]
gi|431372059|gb|ELG57755.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE118]
gi|431376984|gb|ELG62123.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE123]
gi|431399550|gb|ELG82955.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE141]
gi|431425633|gb|ELH07702.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE194]
gi|431427690|gb|ELH09633.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE165]
gi|431432970|gb|ELH14645.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE192]
gi|431459094|gb|ELH39410.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE183]
gi|431484661|gb|ELH64335.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE209]
gi|431488968|gb|ELH68597.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE207]
gi|431492246|gb|ELH71848.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE215]
gi|431500550|gb|ELH79564.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE211]
gi|431501518|gb|ELH80499.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE217]
gi|431513071|gb|ELH91157.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE218]
gi|431520010|gb|ELH97439.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE223]
gi|431520438|gb|ELH97764.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE229]
gi|431520774|gb|ELH98094.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE227]
gi|431538844|gb|ELI14824.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE109]
gi|431547062|gb|ELI21444.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE113]
gi|431564779|gb|ELI37946.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE124]
gi|431580986|gb|ELI53441.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE129]
gi|431591980|gb|ELI62887.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE131]
gi|431596849|gb|ELI66790.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE133]
gi|431599306|gb|ELI69013.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE137]
gi|431611417|gb|ELI80695.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE139]
gi|431614400|gb|ELI83554.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE145]
gi|431622651|gb|ELI91338.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE148]
gi|431623350|gb|ELI92022.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE150]
gi|431629513|gb|ELI97875.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE153]
gi|431637669|gb|ELJ05723.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE157]
gi|431639117|gb|ELJ06988.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE160]
gi|431654258|gb|ELJ21317.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE167]
gi|431656329|gb|ELJ23316.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE168]
gi|431666311|gb|ELJ32953.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE174]
gi|431668920|gb|ELJ35359.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE176]
gi|431682291|gb|ELJ48058.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE179]
gi|431682726|gb|ELJ48375.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE180]
gi|431700396|gb|ELJ65375.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE85]
gi|431700574|gb|ELJ65551.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE88]
gi|431715577|gb|ELJ79724.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE94]
gi|431727576|gb|ELJ91331.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE97]
gi|431730578|gb|ELJ94141.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE99]
Length = 331
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 99 GCPSDRVQNGMFGACLMGNAQLVADCV 125
>gi|440289524|ref|YP_007342289.1| tRNA-U16,U17-dihydrouridine synthase [Enterobacteriaceae bacterium
strain FGI 57]
gi|440049046|gb|AGB80104.1| tRNA-U16,U17-dihydrouridine synthase [Enterobacteriaceae bacterium
strain FGI 57]
Length = 331
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEERGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 99 GCPSDRVQNGMFGACLMGNAQLVADCV 125
>gi|419177772|ref|ZP_13721572.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7B]
gi|378027302|gb|EHV89932.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7B]
Length = 345
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|422832678|ref|ZP_16880747.1| tRNA-dihydrouridine synthase A [Escherichia coli E101]
gi|432414540|ref|ZP_19657183.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE44]
gi|432634945|ref|ZP_19870839.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE81]
gi|371614827|gb|EHO03310.1| tRNA-dihydrouridine synthase A [Escherichia coli E101]
gi|430946293|gb|ELC66236.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE44]
gi|431175589|gb|ELE75591.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE81]
Length = 345
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|167625570|ref|YP_001675864.1| tRNA-dihydrouridine synthase A [Shewanella halifaxensis HAW-EB4]
gi|167355592|gb|ABZ78205.1| TIM-barrel protein, yjbN family [Shewanella halifaxensis HAW-EB4]
Length = 328
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINI 147
RG Y AY Q++ PL +LG G++ +L AKLA E D +++N+
Sbjct: 50 RGDYLAYNQEEHPLALQLG---------------GSNPADLAACAKLAAERGYDEVNLNV 94
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
GCP + G +GA L + L+ V + V
Sbjct: 95 GCPSDRVQNGRFGACLMAEPELVAECVSAMKQV 127
>gi|15834285|ref|NP_313058.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
Sakai]
gi|74314543|ref|YP_312962.1| tRNA-dihydrouridine synthase A [Shigella sonnei Ss046]
gi|170083506|ref|YP_001732826.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
DH10B]
gi|193063063|ref|ZP_03044155.1| tRNA-dihydrouridine synthase A [Escherichia coli E22]
gi|218556606|ref|YP_002389520.1| tRNA-dihydrouridine synthase A [Escherichia coli IAI1]
gi|218697757|ref|YP_002405424.1| tRNA-dihydrouridine synthase A [Escherichia coli 55989]
gi|218707670|ref|YP_002415189.1| tRNA -dihydrouridine synthase A [Escherichia coli UMN026]
gi|254163985|ref|YP_003047093.1| tRNA-dihydrouridine synthase A [Escherichia coli B str. REL606]
gi|260846843|ref|YP_003224621.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H2 str.
12009]
gi|291285465|ref|YP_003502283.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
CB9615]
gi|300817967|ref|ZP_07098180.1| tRNA dihydrouridine synthase A [Escherichia coli MS 107-1]
gi|300823590|ref|ZP_07103718.1| tRNA dihydrouridine synthase A [Escherichia coli MS 119-7]
gi|300899835|ref|ZP_07118049.1| tRNA dihydrouridine synthase A [Escherichia coli MS 198-1]
gi|300906360|ref|ZP_07124058.1| tRNA dihydrouridine synthase A [Escherichia coli MS 84-1]
gi|300917303|ref|ZP_07133976.1| tRNA dihydrouridine synthase A [Escherichia coli MS 115-1]
gi|300924312|ref|ZP_07140291.1| tRNA dihydrouridine synthase A [Escherichia coli MS 182-1]
gi|300938186|ref|ZP_07152956.1| tRNA dihydrouridine synthase A [Escherichia coli MS 21-1]
gi|300946621|ref|ZP_07160880.1| tRNA dihydrouridine synthase A [Escherichia coli MS 116-1]
gi|300957541|ref|ZP_07169748.1| tRNA dihydrouridine synthase A [Escherichia coli MS 175-1]
gi|301021575|ref|ZP_07185575.1| tRNA dihydrouridine synthase A [Escherichia coli MS 69-1]
gi|301302728|ref|ZP_07208857.1| tRNA dihydrouridine synthase A [Escherichia coli MS 124-1]
gi|301330578|ref|ZP_07223186.1| tRNA dihydrouridine synthase A [Escherichia coli MS 78-1]
gi|301645037|ref|ZP_07245000.1| tRNA dihydrouridine synthase A [Escherichia coli MS 146-1]
gi|307312109|ref|ZP_07591746.1| TIM-barrel protein, yjbN family [Escherichia coli W]
gi|309795855|ref|ZP_07690269.1| tRNA dihydrouridine synthase A [Escherichia coli MS 145-7]
gi|331644790|ref|ZP_08345907.1| tRNA-dihydrouridine synthase A [Escherichia coli H736]
gi|331665718|ref|ZP_08366612.1| tRNA-dihydrouridine synthase A [Escherichia coli TA143]
gi|331670912|ref|ZP_08371746.1| tRNA-dihydrouridine synthase A [Escherichia coli TA271]
gi|331680179|ref|ZP_08380838.1| tRNA-dihydrouridine synthase A [Escherichia coli H591]
gi|378715002|ref|YP_005279895.1| yjbN family TIM-barrel protein [Escherichia coli KO11FL]
gi|386278658|ref|ZP_10056352.1| tRNA-dihydrouridine synthase A [Escherichia sp. 4_1_40B]
gi|386597433|ref|YP_006093833.1| yjbN family TIM-barrel protein [Escherichia coli DH1]
gi|386611456|ref|YP_006126942.1| tRNA-dihydrouridine synthase A [Escherichia coli W]
gi|387623679|ref|YP_006131307.1| tRNA-dihydrouridine synthase A [Escherichia coli DH1]
gi|387885273|ref|YP_006315575.1| tRNA-dihydrouridine synthase A [Escherichia coli Xuzhou21]
gi|388479998|ref|YP_492192.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
W3110]
gi|404372969|ref|ZP_10978244.1| tRNA-dihydrouridine synthase A [Escherichia sp. 1_1_43]
gi|414578913|ref|ZP_11436071.1| tRNA dihydrouridine synthase A family protein [Shigella sonnei
3233-85]
gi|415775768|ref|ZP_11487452.1| tRNA-dihydrouridine synthase A [Escherichia coli 3431]
gi|415831878|ref|ZP_11517429.1| tRNA-dihydrouridine synthase A [Escherichia coli OK1357]
gi|415851830|ref|ZP_11528400.1| tRNA-dihydrouridine synthase A [Shigella sonnei 53G]
gi|415864649|ref|ZP_11537673.1| tRNA dihydrouridine synthase A [Escherichia coli MS 85-1]
gi|415874338|ref|ZP_11541392.1| tRNA-dihydrouridine synthase A [Escherichia coli MS 79-10]
gi|417127511|ref|ZP_11974951.1| tRNA dihydrouridine synthase A [Escherichia coli 97.0246]
gi|417132710|ref|ZP_11977495.1| tRNA dihydrouridine synthase A [Escherichia coli 5.0588]
gi|417141753|ref|ZP_11984605.1| tRNA dihydrouridine synthase A [Escherichia coli 97.0259]
gi|417187164|ref|ZP_12012021.1| tRNA dihydrouridine synthase A [Escherichia coli 93.0624]
gi|417238755|ref|ZP_12036179.1| tRNA dihydrouridine synthase A [Escherichia coli 9.0111]
gi|417249758|ref|ZP_12041542.1| tRNA dihydrouridine synthase A [Escherichia coli 4.0967]
gi|417261060|ref|ZP_12048553.1| tRNA dihydrouridine synthase A [Escherichia coli 2.3916]
gi|417269156|ref|ZP_12056516.1| tRNA dihydrouridine synthase A [Escherichia coli 3.3884]
gi|417273712|ref|ZP_12061057.1| tRNA dihydrouridine synthase A [Escherichia coli 2.4168]
gi|417310661|ref|ZP_12097471.1| tRNA-dihydrouridine synthase A [Escherichia coli PCN033]
gi|417583720|ref|ZP_12234514.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_B2F1]
gi|417599494|ref|ZP_12250112.1| tRNA-dihydrouridine synthase A [Escherichia coli 3030-1]
gi|417610830|ref|ZP_12261315.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_DG131-3]
gi|417615717|ref|ZP_12266162.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_EH250]
gi|417631546|ref|ZP_12281774.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_MHI813]
gi|418960069|ref|ZP_13511964.1| TIM-barrel protein, yjbN family [Escherichia coli J53]
gi|419053914|ref|ZP_13600777.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3B]
gi|419065341|ref|ZP_13612045.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3D]
gi|419112114|ref|ZP_13657159.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4F]
gi|419117635|ref|ZP_13662637.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5A]
gi|419129077|ref|ZP_13673940.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5C]
gi|419151060|ref|ZP_13695702.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC6B]
gi|419156579|ref|ZP_13701128.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6C]
gi|419194344|ref|ZP_13737778.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC7E]
gi|419280846|ref|ZP_13823079.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10E]
gi|419292283|ref|ZP_13834361.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC11A]
gi|419303099|ref|ZP_13845085.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11C]
gi|419309143|ref|ZP_13851027.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11D]
gi|419314102|ref|ZP_13855954.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11E]
gi|419352352|ref|ZP_13893673.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13B]
gi|419357838|ref|ZP_13899077.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13C]
gi|419362797|ref|ZP_13903997.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13D]
gi|419367977|ref|ZP_13909116.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13E]
gi|419372703|ref|ZP_13913802.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC14A]
gi|419383646|ref|ZP_13924578.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14C]
gi|419388902|ref|ZP_13929756.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14D]
gi|419399518|ref|ZP_13940272.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15B]
gi|419404760|ref|ZP_13945471.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15C]
gi|419409921|ref|ZP_13950600.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15D]
gi|419415486|ref|ZP_13956112.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15E]
gi|419805709|ref|ZP_14330838.1| TIM-barrel protein, yjbN family [Escherichia coli AI27]
gi|420361454|ref|ZP_14862391.1| tRNA dihydrouridine synthase A family protein [Shigella sonnei
3226-85]
gi|420366102|ref|ZP_14866955.1| tRNA-dihydrouridine synthase A [Shigella sonnei 4822-66]
gi|420388436|ref|ZP_14887762.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
EPECa12]
gi|420394208|ref|ZP_14893445.1| tRNA-dihydrouridine synthase A [Escherichia coli EPEC C342-62]
gi|421820906|ref|ZP_16256383.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
10.0821]
gi|421827916|ref|ZP_16263248.1| tRNA-dihydrouridine synthase [Escherichia coli PA7]
gi|422331517|ref|ZP_16412533.1| tRNA-dihydrouridine synthase A [Escherichia coli 4_1_47FAA]
gi|422354931|ref|ZP_16435656.1| tRNA dihydrouridine synthase A [Escherichia coli MS 117-3]
gi|422776251|ref|ZP_16829905.1| tRNA dihydrouridine synthase A [Escherichia coli H120]
gi|422958043|ref|ZP_16970257.1| tRNA-dihydrouridine synthase A [Escherichia coli H494]
gi|422990314|ref|ZP_16981086.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
C227-11]
gi|422997210|ref|ZP_16987972.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
C236-11]
gi|423002306|ref|ZP_16993057.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
09-7901]
gi|423005962|ref|ZP_16996707.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
04-8351]
gi|423012525|ref|ZP_17003255.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-3677]
gi|423021756|ref|ZP_17012460.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4404]
gi|423026910|ref|ZP_17017604.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4522]
gi|423032739|ref|ZP_17023425.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4623]
gi|423035615|ref|ZP_17026291.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423040734|ref|ZP_17031402.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423047420|ref|ZP_17038078.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423055958|ref|ZP_17044764.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423057963|ref|ZP_17046761.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423703599|ref|ZP_17678031.1| tRNA-dihydrouridine synthase A [Escherichia coli H730]
gi|423708364|ref|ZP_17682744.1| tRNA-dihydrouridine synthase A [Escherichia coli B799]
gi|424080404|ref|ZP_17817337.1| tRNA-dihydrouridine synthase [Escherichia coli FDA505]
gi|424112734|ref|ZP_17846938.1| tRNA-dihydrouridine synthase [Escherichia coli 93-001]
gi|424124866|ref|ZP_17858141.1| tRNA-dihydrouridine synthase [Escherichia coli PA5]
gi|424452613|ref|ZP_17904228.1| tRNA-dihydrouridine synthase [Escherichia coli PA32]
gi|424528995|ref|ZP_17972685.1| tRNA-dihydrouridine synthase [Escherichia coli EC4421]
gi|424535138|ref|ZP_17978465.1| tRNA-dihydrouridine synthase [Escherichia coli EC4422]
gi|425100876|ref|ZP_18503591.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
3.4870]
gi|425112954|ref|ZP_18514853.1| tRNA-dihydrouridine synthase [Escherichia coli 6.0172]
gi|425117681|ref|ZP_18519448.1| tRNA-dihydrouridine synthase [Escherichia coli 8.0566]
gi|425122396|ref|ZP_18524060.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.0569]
gi|425128923|ref|ZP_18530069.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.0586]
gi|425159409|ref|ZP_18558619.1| tRNA-dihydrouridine synthase [Escherichia coli FDA506]
gi|425171003|ref|ZP_18569455.1| tRNA-dihydrouridine synthase [Escherichia coli FDA507]
gi|425177043|ref|ZP_18575140.1| tRNA-dihydrouridine synthase [Escherichia coli FDA504]
gi|425214787|ref|ZP_18610168.1| tRNA-dihydrouridine synthase [Escherichia coli PA4]
gi|425220869|ref|ZP_18615810.1| tRNA-dihydrouridine synthase [Escherichia coli PA23]
gi|425227524|ref|ZP_18621967.1| tRNA-dihydrouridine synthase [Escherichia coli PA49]
gi|425233673|ref|ZP_18627690.1| tRNA-dihydrouridine synthase [Escherichia coli PA45]
gi|425239596|ref|ZP_18633294.1| tRNA-dihydrouridine synthase [Escherichia coli TT12B]
gi|425251985|ref|ZP_18644907.1| tRNA-dihydrouridine synthase [Escherichia coli 5905]
gi|425275402|ref|ZP_18666774.1| tRNA-dihydrouridine synthase [Escherichia coli TW15901]
gi|425285955|ref|ZP_18676961.1| tRNA-dihydrouridine synthase [Escherichia coli TW00353]
gi|425413899|ref|ZP_18795638.1| tRNA-dihydrouridine synthase [Escherichia coli NE098]
gi|425420221|ref|ZP_18801470.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK523]
gi|425425094|ref|ZP_18806232.1| tRNA-dihydrouridine synthase [Escherichia coli 0.1288]
gi|427811850|ref|ZP_18978915.1| hypothetical protein BN17_40231 [Escherichia coli]
gi|428955991|ref|ZP_19027759.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.1042]
gi|428986610|ref|ZP_19055976.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
93.0055]
gi|428998598|ref|ZP_19067168.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
94.0618]
gi|429011083|ref|ZP_19078450.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.1288]
gi|429017496|ref|ZP_19084350.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0943]
gi|429029414|ref|ZP_19095364.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0427]
gi|429052887|ref|ZP_19117438.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0003]
gi|429063933|ref|ZP_19127872.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0007]
gi|429081140|ref|ZP_19144260.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0713]
gi|429721797|ref|ZP_19256708.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429773875|ref|ZP_19305884.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02030]
gi|429779060|ref|ZP_19311021.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02033-1]
gi|429782895|ref|ZP_19314815.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02092]
gi|429788288|ref|ZP_19320170.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02093]
gi|429794726|ref|ZP_19326562.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02281]
gi|429800686|ref|ZP_19332470.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02318]
gi|429804299|ref|ZP_19336051.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02913]
gi|429809124|ref|ZP_19340834.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-03439]
gi|429814888|ref|ZP_19346553.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-04080]
gi|429820092|ref|ZP_19351716.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-03943]
gi|429835802|ref|ZP_19366016.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0010]
gi|429906166|ref|ZP_19372138.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429910300|ref|ZP_19376258.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429916198|ref|ZP_19382141.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429921246|ref|ZP_19387170.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429927051|ref|ZP_19392960.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429930984|ref|ZP_19396881.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429937525|ref|ZP_19403409.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429943203|ref|ZP_19409074.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429945884|ref|ZP_19411742.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429953449|ref|ZP_19419291.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429956792|ref|ZP_19422622.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432351237|ref|ZP_19594554.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE2]
gi|432379291|ref|ZP_19622268.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE12]
gi|432404445|ref|ZP_19647184.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE26]
gi|432428713|ref|ZP_19671188.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE181]
gi|432463456|ref|ZP_19705583.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE204]
gi|432478411|ref|ZP_19720392.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE208]
gi|432479001|ref|ZP_19720968.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE210]
gi|432491879|ref|ZP_19733734.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE213]
gi|432520261|ref|ZP_19757436.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE228]
gi|432531841|ref|ZP_19768857.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE234]
gi|432540429|ref|ZP_19777317.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE235]
gi|432545911|ref|ZP_19782728.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE236]
gi|432551392|ref|ZP_19788135.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE237]
gi|432561499|ref|ZP_19798137.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE51]
gi|432604875|ref|ZP_19841098.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE66]
gi|432624444|ref|ZP_19860452.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE76]
gi|432625219|ref|ZP_19861214.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE77]
gi|432643645|ref|ZP_19879462.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE83]
gi|432658890|ref|ZP_19894560.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE111]
gi|432663768|ref|ZP_19899375.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE116]
gi|432682842|ref|ZP_19918190.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE143]
gi|432683524|ref|ZP_19918853.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE156]
gi|432689370|ref|ZP_19924630.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE161]
gi|432702216|ref|ZP_19937350.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE171]
gi|432716681|ref|ZP_19951690.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE9]
gi|432735095|ref|ZP_19969903.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE42]
gi|432752504|ref|ZP_19987078.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE29]
gi|432762956|ref|ZP_19997414.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE48]
gi|432768421|ref|ZP_20002808.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE50]
gi|432772821|ref|ZP_20007129.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE54]
gi|432808295|ref|ZP_20042205.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE91]
gi|432811799|ref|ZP_20045651.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE101]
gi|432817883|ref|ZP_20051610.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE115]
gi|432829663|ref|ZP_20063275.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE135]
gi|432832716|ref|ZP_20066266.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE136]
gi|432837144|ref|ZP_20070644.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE140]
gi|432857506|ref|ZP_20084376.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE146]
gi|432872090|ref|ZP_20091969.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE147]
gi|432882896|ref|ZP_20098516.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE158]
gi|432908878|ref|ZP_20116469.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE190]
gi|432931883|ref|ZP_20131824.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE184]
gi|432943915|ref|ZP_20140578.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE196]
gi|432951533|ref|ZP_20145037.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE197]
gi|432958064|ref|ZP_20149206.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE202]
gi|432965817|ref|ZP_20154737.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE203]
gi|433021308|ref|ZP_20209376.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE105]
gi|433045591|ref|ZP_20233057.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE117]
gi|433050521|ref|ZP_20237831.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE120]
gi|433055680|ref|ZP_20242824.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE122]
gi|433065520|ref|ZP_20252414.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE125]
gi|433070459|ref|ZP_20257212.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE128]
gi|433094450|ref|ZP_20280692.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE138]
gi|433132641|ref|ZP_20318055.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE163]
gi|433137312|ref|ZP_20322629.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE166]
gi|433161209|ref|ZP_20346015.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE177]
gi|433180924|ref|ZP_20365288.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE82]
gi|433196113|ref|ZP_20380070.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE90]
gi|433205807|ref|ZP_20389541.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE95]
gi|442594682|ref|ZP_21012561.1| tRNA dihydrouridine synthase A [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|444966243|ref|ZP_21283783.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1775]
gi|445031633|ref|ZP_21347283.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1781]
gi|445047930|ref|ZP_21363163.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
3.4880]
gi|445053517|ref|ZP_21368513.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0083]
gi|445061494|ref|ZP_21373996.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0670]
gi|13364508|dbj|BAB38454.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|73858020|gb|AAZ90727.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|85676801|dbj|BAE78051.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K12 substr.
W3110]
gi|169891341|gb|ACB05048.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
DH10B]
gi|192931322|gb|EDV83924.1| tRNA-dihydrouridine synthase A [Escherichia coli E22]
gi|218354489|emb|CAV01337.1| tRNA-dihydrouridine synthase A [Escherichia coli 55989]
gi|218363375|emb|CAR01028.1| tRNA-dihydrouridine synthase A [Escherichia coli IAI1]
gi|218434767|emb|CAR15700.1| tRNA-dihydrouridine synthase A [Escherichia coli UMN026]
gi|253975886|gb|ACT41557.1| tRNA-dihydrouridine synthase A [Escherichia coli B str. REL606]
gi|257761990|dbj|BAI33487.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H2 str.
12009]
gi|260451122|gb|ACX41544.1| TIM-barrel protein, yjbN family [Escherichia coli DH1]
gi|290765338|gb|ADD59299.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
CB9615]
gi|300315715|gb|EFJ65499.1| tRNA dihydrouridine synthase A [Escherichia coli MS 175-1]
gi|300356606|gb|EFJ72476.1| tRNA dihydrouridine synthase A [Escherichia coli MS 198-1]
gi|300397973|gb|EFJ81511.1| tRNA dihydrouridine synthase A [Escherichia coli MS 69-1]
gi|300401808|gb|EFJ85346.1| tRNA dihydrouridine synthase A [Escherichia coli MS 84-1]
gi|300415447|gb|EFJ98757.1| tRNA dihydrouridine synthase A [Escherichia coli MS 115-1]
gi|300419477|gb|EFK02788.1| tRNA dihydrouridine synthase A [Escherichia coli MS 182-1]
gi|300453720|gb|EFK17340.1| tRNA dihydrouridine synthase A [Escherichia coli MS 116-1]
gi|300456844|gb|EFK20337.1| tRNA dihydrouridine synthase A [Escherichia coli MS 21-1]
gi|300523922|gb|EFK44991.1| tRNA dihydrouridine synthase A [Escherichia coli MS 119-7]
gi|300529377|gb|EFK50439.1| tRNA dihydrouridine synthase A [Escherichia coli MS 107-1]
gi|300841948|gb|EFK69708.1| tRNA dihydrouridine synthase A [Escherichia coli MS 124-1]
gi|300843456|gb|EFK71216.1| tRNA dihydrouridine synthase A [Escherichia coli MS 78-1]
gi|301076659|gb|EFK91465.1| tRNA dihydrouridine synthase A [Escherichia coli MS 146-1]
gi|306907916|gb|EFN38417.1| TIM-barrel protein, yjbN family [Escherichia coli W]
gi|308120516|gb|EFO57778.1| tRNA dihydrouridine synthase A [Escherichia coli MS 145-7]
gi|315063373|gb|ADT77700.1| tRNA-dihydrouridine synthase A [Escherichia coli W]
gi|315138603|dbj|BAJ45762.1| tRNA-dihydrouridine synthase A [Escherichia coli DH1]
gi|315254721|gb|EFU34689.1| tRNA dihydrouridine synthase A [Escherichia coli MS 85-1]
gi|315617417|gb|EFU98023.1| tRNA-dihydrouridine synthase A [Escherichia coli 3431]
gi|323164554|gb|EFZ50355.1| tRNA-dihydrouridine synthase A [Shigella sonnei 53G]
gi|323182152|gb|EFZ67562.1| tRNA-dihydrouridine synthase A [Escherichia coli OK1357]
gi|323380563|gb|ADX52831.1| TIM-barrel protein, yjbN family [Escherichia coli KO11FL]
gi|323946182|gb|EGB42216.1| tRNA dihydrouridine synthase A [Escherichia coli H120]
gi|324017108|gb|EGB86327.1| tRNA dihydrouridine synthase A [Escherichia coli MS 117-3]
gi|331035765|gb|EGI08003.1| tRNA-dihydrouridine synthase A [Escherichia coli H736]
gi|331056769|gb|EGI28763.1| tRNA-dihydrouridine synthase A [Escherichia coli TA143]
gi|331061826|gb|EGI33751.1| tRNA-dihydrouridine synthase A [Escherichia coli TA271]
gi|331071642|gb|EGI42978.1| tRNA-dihydrouridine synthase A [Escherichia coli H591]
gi|338767747|gb|EGP22557.1| tRNA-dihydrouridine synthase A [Escherichia coli PCN033]
gi|342930161|gb|EGU98883.1| tRNA-dihydrouridine synthase A [Escherichia coli MS 79-10]
gi|345331951|gb|EGW64409.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_B2F1]
gi|345347312|gb|EGW79624.1| tRNA-dihydrouridine synthase A [Escherichia coli 3030-1]
gi|345352482|gb|EGW84730.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_DG131-3]
gi|345356864|gb|EGW89064.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_EH250]
gi|345368782|gb|EGX00778.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_MHI813]
gi|354856290|gb|EHF16750.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
C236-11]
gi|354860856|gb|EHF21297.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
04-8351]
gi|354861381|gb|EHF21821.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
C227-11]
gi|354870086|gb|EHF30492.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
09-7901]
gi|354874485|gb|EHF34853.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-3677]
gi|354883727|gb|EHF44042.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4404]
gi|354887989|gb|EHF48252.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4522]
gi|354891673|gb|EHF51899.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4623]
gi|354903374|gb|EHF63476.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354907020|gb|EHF67087.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354908961|gb|EHF68998.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354911087|gb|EHF71093.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C4]
gi|354919640|gb|EHF79582.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-4632 C5]
gi|359334159|dbj|BAL40606.1| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
MDS42]
gi|371596951|gb|EHN85777.1| tRNA-dihydrouridine synthase A [Escherichia coli H494]
gi|373247535|gb|EHP66976.1| tRNA-dihydrouridine synthase A [Escherichia coli 4_1_47FAA]
gi|377888304|gb|EHU52775.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3B]
gi|377904979|gb|EHU69256.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3D]
gi|377952740|gb|EHV16321.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4F]
gi|377956034|gb|EHV19585.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5A]
gi|377968295|gb|EHV31689.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5C]
gi|377987624|gb|EHV50809.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC6B]
gi|377991087|gb|EHV54241.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6C]
gi|378033676|gb|EHV96251.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC7E]
gi|378122378|gb|EHW83806.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10E]
gi|378123054|gb|EHW84472.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC11A]
gi|378143086|gb|EHX04279.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11D]
gi|378145028|gb|EHX06195.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11C]
gi|378153792|gb|EHX14871.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC11E]
gi|378194748|gb|EHX55258.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13C]
gi|378194907|gb|EHX55415.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13B]
gi|378196913|gb|EHX57397.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13D]
gi|378207648|gb|EHX68038.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13E]
gi|378211661|gb|EHX71997.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC14A]
gi|378223175|gb|EHX83403.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14C]
gi|378225785|gb|EHX85979.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14D]
gi|378238668|gb|EHX98662.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15B]
gi|378241515|gb|EHY01481.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15C]
gi|378249386|gb|EHY09295.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15D]
gi|378254588|gb|EHY14451.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15E]
gi|384377180|gb|EIE35076.1| TIM-barrel protein, yjbN family [Escherichia coli J53]
gi|384471302|gb|EIE55384.1| TIM-barrel protein, yjbN family [Escherichia coli AI27]
gi|385708038|gb|EIG45058.1| tRNA-dihydrouridine synthase A [Escherichia coli H730]
gi|385708313|gb|EIG45326.1| tRNA-dihydrouridine synthase A [Escherichia coli B799]
gi|386124171|gb|EIG72754.1| tRNA-dihydrouridine synthase A [Escherichia sp. 4_1_40B]
gi|386143977|gb|EIG90444.1| tRNA dihydrouridine synthase A [Escherichia coli 97.0246]
gi|386150564|gb|EIH01853.1| tRNA dihydrouridine synthase A [Escherichia coli 5.0588]
gi|386155656|gb|EIH12007.1| tRNA dihydrouridine synthase A [Escherichia coli 97.0259]
gi|386181655|gb|EIH64416.1| tRNA dihydrouridine synthase A [Escherichia coli 93.0624]
gi|386213292|gb|EII23721.1| tRNA dihydrouridine synthase A [Escherichia coli 9.0111]
gi|386220079|gb|EII36543.1| tRNA dihydrouridine synthase A [Escherichia coli 4.0967]
gi|386225464|gb|EII47794.1| tRNA dihydrouridine synthase A [Escherichia coli 2.3916]
gi|386227961|gb|EII55317.1| tRNA dihydrouridine synthase A [Escherichia coli 3.3884]
gi|386233894|gb|EII65874.1| tRNA dihydrouridine synthase A [Escherichia coli 2.4168]
gi|386798731|gb|AFJ31765.1| tRNA-dihydrouridine synthase A [Escherichia coli Xuzhou21]
gi|390636843|gb|EIN16408.1| tRNA-dihydrouridine synthase [Escherichia coli FDA505]
gi|390656199|gb|EIN34085.1| tRNA-dihydrouridine synthase [Escherichia coli 93-001]
gi|390676800|gb|EIN52879.1| tRNA-dihydrouridine synthase [Escherichia coli PA5]
gi|390736690|gb|EIO08014.1| tRNA-dihydrouridine synthase [Escherichia coli PA32]
gi|390847338|gb|EIP10884.1| tRNA-dihydrouridine synthase [Escherichia coli EC4421]
gi|390857612|gb|EIP20039.1| tRNA-dihydrouridine synthase [Escherichia coli EC4422]
gi|391276753|gb|EIQ35515.1| tRNA dihydrouridine synthase A family protein [Shigella sonnei
3226-85]
gi|391279919|gb|EIQ38599.1| tRNA dihydrouridine synthase A family protein [Shigella sonnei
3233-85]
gi|391291273|gb|EIQ49683.1| tRNA-dihydrouridine synthase A [Shigella sonnei 4822-66]
gi|391300720|gb|EIQ58628.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
EPECa12]
gi|391308710|gb|EIQ66400.1| tRNA-dihydrouridine synthase A [Escherichia coli EPEC C342-62]
gi|404293218|gb|EEH72154.2| tRNA-dihydrouridine synthase A [Escherichia sp. 1_1_43]
gi|408073042|gb|EKH07351.1| tRNA-dihydrouridine synthase [Escherichia coli PA7]
gi|408079601|gb|EKH13716.1| tRNA-dihydrouridine synthase [Escherichia coli FDA507]
gi|408087883|gb|EKH21285.1| tRNA-dihydrouridine synthase [Escherichia coli FDA504]
gi|408092649|gb|EKH25834.1| tRNA-dihydrouridine synthase [Escherichia coli FDA506]
gi|408124563|gb|EKH55227.1| tRNA-dihydrouridine synthase [Escherichia coli PA4]
gi|408134422|gb|EKH64253.1| tRNA-dihydrouridine synthase [Escherichia coli PA23]
gi|408135989|gb|EKH65748.1| tRNA-dihydrouridine synthase [Escherichia coli PA49]
gi|408143289|gb|EKH72597.1| tRNA-dihydrouridine synthase [Escherichia coli PA45]
gi|408151617|gb|EKH80104.1| tRNA-dihydrouridine synthase [Escherichia coli TT12B]
gi|408160868|gb|EKH88859.1| tRNA-dihydrouridine synthase [Escherichia coli 5905]
gi|408189214|gb|EKI14964.1| tRNA-dihydrouridine synthase [Escherichia coli TW15901]
gi|408196910|gb|EKI22184.1| tRNA-dihydrouridine synthase [Escherichia coli TW00353]
gi|408322390|gb|EKJ38384.1| tRNA-dihydrouridine synthase [Escherichia coli NE098]
gi|408333436|gb|EKJ48385.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK523]
gi|408340122|gb|EKJ54631.1| tRNA-dihydrouridine synthase [Escherichia coli 0.1288]
gi|408544476|gb|EKK21929.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
3.4870]
gi|408544935|gb|EKK22376.1| tRNA-dihydrouridine synthase [Escherichia coli 6.0172]
gi|408562418|gb|EKK38580.1| tRNA-dihydrouridine synthase [Escherichia coli 8.0566]
gi|408562657|gb|EKK38814.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.0586]
gi|408563515|gb|EKK39647.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.0569]
gi|408607240|gb|EKK80644.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
10.0821]
gi|412972029|emb|CCJ46699.1| hypothetical protein BN17_40231 [Escherichia coli]
gi|427200763|gb|EKV71175.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.1042]
gi|427237348|gb|EKW04891.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
93.0055]
gi|427241671|gb|EKW09095.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
94.0618]
gi|427256764|gb|EKW22915.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.1288]
gi|427256854|gb|EKW23002.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0943]
gi|427274140|gb|EKW38801.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0427]
gi|427296711|gb|EKW59759.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0003]
gi|427309915|gb|EKW72201.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0007]
gi|427325460|gb|EKW86900.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0713]
gi|429250691|gb|EKY35341.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.0010]
gi|429354130|gb|EKY90834.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02030]
gi|429354983|gb|EKY91677.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02033-1]
gi|429355975|gb|EKY92658.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02092]
gi|429369700|gb|EKZ06275.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02093]
gi|429369995|gb|EKZ06562.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02281]
gi|429371740|gb|EKZ08291.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02318]
gi|429385867|gb|EKZ22319.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-02913]
gi|429387816|gb|EKZ24247.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-03439]
gi|429387996|gb|EKZ24423.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-03943]
gi|429398944|gb|EKZ35269.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
11-04080]
gi|429401059|gb|EKZ37368.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429403621|gb|EKZ39903.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429412014|gb|EKZ48212.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429414147|gb|EKZ50323.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429422266|gb|EKZ58386.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429425143|gb|EKZ61234.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429430862|gb|EKZ66913.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429437739|gb|EKZ73737.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429441594|gb|EKZ77563.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429446936|gb|EKZ82861.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429453175|gb|EKZ89044.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429458229|gb|EKZ94058.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430881972|gb|ELC05177.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE2]
gi|430894939|gb|ELC17215.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE12]
gi|430922110|gb|ELC42874.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE26]
gi|430949756|gb|ELC69182.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE181]
gi|430984614|gb|ELD01236.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE204]
gi|431001219|gb|ELD16806.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE208]
gi|431011961|gb|ELD26031.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE210]
gi|431016488|gb|ELD30033.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE213]
gi|431046854|gb|ELD56945.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE228]
gi|431065903|gb|ELD74652.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE234]
gi|431066212|gb|ELD74956.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE235]
gi|431069508|gb|ELD77836.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE236]
gi|431075033|gb|ELD82568.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE237]
gi|431102271|gb|ELE07097.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE51]
gi|431135527|gb|ELE37403.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE66]
gi|431154496|gb|ELE55299.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE76]
gi|431167158|gb|ELE67442.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE77]
gi|431176537|gb|ELE76495.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE83]
gi|431205121|gb|ELF03629.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE111]
gi|431206103|gb|ELF04535.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE116]
gi|431216417|gb|ELF14055.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE143]
gi|431226748|gb|ELF23906.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE156]
gi|431233796|gb|ELF29382.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE161]
gi|431248629|gb|ELF42822.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE171]
gi|431269061|gb|ELF60420.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE9]
gi|431288895|gb|ELF79650.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE42]
gi|431292445|gb|ELF82833.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE29]
gi|431314624|gb|ELG02557.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE48]
gi|431321247|gb|ELG08860.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE50]
gi|431322968|gb|ELG10525.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE54]
gi|431351518|gb|ELG38304.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE91]
gi|431358555|gb|ELG45206.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE101]
gi|431358872|gb|ELG45517.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE115]
gi|431381247|gb|ELG65878.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE135]
gi|431389915|gb|ELG73624.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE136]
gi|431394112|gb|ELG77653.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE140]
gi|431406404|gb|ELG89624.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE147]
gi|431410675|gb|ELG93831.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE146]
gi|431422141|gb|ELH04335.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE158]
gi|431450338|gb|ELH30825.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE190]
gi|431458467|gb|ELH38791.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE184]
gi|431466054|gb|ELH46133.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE196]
gi|431475178|gb|ELH54982.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE203]
gi|431476578|gb|ELH56368.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE197]
gi|431484867|gb|ELH64538.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE202]
gi|431525831|gb|ELI02605.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE105]
gi|431550752|gb|ELI24740.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE117]
gi|431560792|gb|ELI34299.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE120]
gi|431564308|gb|ELI37484.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE122]
gi|431577136|gb|ELI49788.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE125]
gi|431577648|gb|ELI50278.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE128]
gi|431605804|gb|ELI75191.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE138]
gi|431640965|gb|ELJ08710.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE163]
gi|431652445|gb|ELJ19595.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE166]
gi|431672194|gb|ELJ38466.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE177]
gi|431696969|gb|ELJ62118.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE82]
gi|431712298|gb|ELJ76595.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE90]
gi|431714749|gb|ELJ78928.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE95]
gi|441605221|emb|CCP97820.1| tRNA dihydrouridine synthase A [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|444571367|gb|ELV47851.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1775]
gi|444636108|gb|ELW09511.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1781]
gi|444656499|gb|ELW29023.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
3.4880]
gi|444658560|gb|ELW31011.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0083]
gi|444666168|gb|ELW38246.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0670]
Length = 345
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|445193192|ref|ZP_21400083.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|444866688|gb|ELX91410.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
Length = 239
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|432878609|ref|ZP_20095891.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE154]
gi|431416474|gb|ELG98960.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE154]
Length = 345
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|15804641|ref|NP_290682.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EDL933]
gi|12519000|gb|AAG59247.1|AE005638_1 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
Length = 345
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|408785355|ref|ZP_11197102.1| tRNA-dihydrouridine synthase [Rhizobium lupini HPC(L)]
gi|408488949|gb|EKJ97256.1| tRNA-dihydrouridine synthase [Rhizobium lupini HPC(L)]
Length = 333
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 80 IGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH 139
+ ++VA RG + W L G M H + G ++ + EAAK+A +
Sbjct: 51 VASRELVANRG-------ESWARLKNAG------MVPHMVQLAGREAHFMAEAAKIAAGN 97
Query: 140 CDGI-DINIGCPQMVAKRGHYGAYLQDD 166
GI DIN+GCP G+ G+ L D
Sbjct: 98 GAGIIDINMGCPAKKVTGGYSGSALMRD 125
>gi|358056655|dbj|GAA97318.1| hypothetical protein E5Q_03996 [Mixia osmundae IAM 14324]
Length = 366
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F ++ L +AA+L H D IDIN GCPQ A + G+YL + NL+
Sbjct: 130 IQFAASEPVALADAAELVAGHVDAIDINCGCPQSWAYKECIGSYLLRQPDKVRNLI 185
>gi|422807140|ref|ZP_16855571.1| tRNA dihydrouridine synthase A [Escherichia fergusonii B253]
gi|324112315|gb|EGC06293.1| tRNA dihydrouridine synthase A [Escherichia fergusonii B253]
Length = 333
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 99 GCPSDRVQNGMFGACLMGNAQLVADCV 125
>gi|416790530|ref|ZP_11881227.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H- str.
493-89]
gi|416833963|ref|ZP_11900652.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
LSU-61]
gi|320644173|gb|EFX13238.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H- str.
493-89]
gi|320665665|gb|EFX32702.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
LSU-61]
Length = 339
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 62 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 106
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 107 GCPSDRVQNGMFGACLMGNAQLVADCV 133
>gi|237728132|ref|ZP_04558613.1| tRNA-dihydrouridine synthase A [Citrobacter sp. 30_2]
gi|226910143|gb|EEH96061.1| tRNA-dihydrouridine synthase A [Citrobacter sp. 30_2]
Length = 331
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEQRGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 99 GCPSDRVQNGMFGACLMGNAQLVADCV 125
>gi|188494852|ref|ZP_03002122.1| tRNA-dihydrouridine synthase A [Escherichia coli 53638]
gi|188490051|gb|EDU65154.1| tRNA-dihydrouridine synthase A [Escherichia coli 53638]
Length = 347
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 70 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 114
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 115 GCPSDRVQNGMFGACLMGNAQLVADCV 141
>gi|194437343|ref|ZP_03069441.1| tRNA-dihydrouridine synthase A [Escherichia coli 101-1]
gi|194423899|gb|EDX39888.1| tRNA-dihydrouridine synthase A [Escherichia coli 101-1]
Length = 345
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|170769561|ref|ZP_02904014.1| tRNA-dihydrouridine synthase A [Escherichia albertii TW07627]
gi|170121618|gb|EDS90549.1| tRNA-dihydrouridine synthase A [Escherichia albertii TW07627]
Length = 331
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 99 GCPSDRVQNGMFGACLMGNAQLVADCV 125
>gi|432619360|ref|ZP_19855456.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE75]
gi|431150292|gb|ELE51349.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE75]
Length = 331
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 99 GCPSDRVQNGMFGACLMGNAQLVADCV 125
>gi|432452323|ref|ZP_19694574.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE193]
gi|433035989|ref|ZP_20223668.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE112]
gi|430976481|gb|ELC93347.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE193]
gi|431544850|gb|ELI19661.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE112]
Length = 345
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|424919221|ref|ZP_18342585.1| tRNA dihydrouridine synthase A [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392855397|gb|EJB07918.1| tRNA dihydrouridine synthase A [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 333
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 111 RSHMCGH-------SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAY 162
R + GH +L G+D L EA K++EP+ D I++N+GCP + G +GA
Sbjct: 49 RERLLGHDAAEHPVALQLGGSDPSKLAEAVKISEPYGYDEINLNVGCPSDRVQSGTFGAC 108
Query: 163 L 163
L
Sbjct: 109 L 109
>gi|417345397|ref|ZP_12125529.1| tRNA dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
gi|357953004|gb|EHJ79712.1| tRNA dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
Length = 263
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|415797083|ref|ZP_11497925.1| tRNA-dihydrouridine synthase A [Escherichia coli E128010]
gi|323162189|gb|EFZ48052.1| tRNA-dihydrouridine synthase A [Escherichia coli E128010]
Length = 330
Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 53 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 97
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 98 GCPSDRVQNGMFGACLMGNAQLVADCV 124
>gi|432409561|ref|ZP_19652251.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE39]
gi|432493381|ref|ZP_19735206.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE214]
gi|430939926|gb|ELC60132.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE39]
gi|431030101|gb|ELD43122.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE214]
Length = 345
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|415857056|ref|ZP_11531885.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2a str. 2457T]
gi|417704087|ref|ZP_12353190.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-218]
gi|417714396|ref|ZP_12363352.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-272]
gi|417719249|ref|ZP_12368136.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-227]
gi|417725059|ref|ZP_12373851.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-304]
gi|417730310|ref|ZP_12378999.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-671]
gi|417735422|ref|ZP_12384064.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2747-71]
gi|417740171|ref|ZP_12388742.1| tRNA-dihydrouridine synthase A [Shigella flexneri 4343-70]
gi|417745259|ref|ZP_12393779.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2930-71]
gi|417830660|ref|ZP_12477195.1| tRNA-dihydrouridine synthase A [Shigella flexneri J1713]
gi|418258885|ref|ZP_12882011.1| tRNA-dihydrouridine synthase A [Shigella flexneri 6603-63]
gi|420322314|ref|ZP_14824136.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
2850-71]
gi|420333272|ref|ZP_14834914.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-1770]
gi|420343712|ref|ZP_14845176.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-404]
gi|420375879|ref|ZP_14875691.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
1235-66]
gi|313648753|gb|EFS13193.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2a str. 2457T]
gi|332751993|gb|EGJ82386.1| tRNA-dihydrouridine synthase A [Shigella flexneri 4343-70]
gi|332752162|gb|EGJ82554.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-671]
gi|332753251|gb|EGJ83632.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2747-71]
gi|332764755|gb|EGJ94984.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2930-71]
gi|332999047|gb|EGK18636.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-272]
gi|332999143|gb|EGK18730.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-218]
gi|333014208|gb|EGK33564.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-304]
gi|333014419|gb|EGK33770.1| tRNA-dihydrouridine synthase A [Shigella flexneri K-227]
gi|335572601|gb|EGM58972.1| tRNA-dihydrouridine synthase A [Shigella flexneri J1713]
gi|391245817|gb|EIQ05083.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
2850-71]
gi|391246770|gb|EIQ06028.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-1770]
gi|391263439|gb|EIQ22445.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-404]
gi|391308582|gb|EIQ66278.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
1235-66]
gi|397895072|gb|EJL11506.1| tRNA-dihydrouridine synthase A [Shigella flexneri 6603-63]
Length = 345
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|309787535|ref|ZP_07682147.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 1617]
gi|308925113|gb|EFP70608.1| tRNA-dihydrouridine synthase A [Shigella dysenteriae 1617]
Length = 339
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 62 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 106
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 107 GCPSDRVQNGMFGACLMGNAQLVADCV 133
>gi|170021953|ref|YP_001726907.1| tRNA-dihydrouridine synthase A [Escherichia coli ATCC 8739]
gi|251787304|ref|YP_003001608.1| tRNA-dihydrouridine synthase A [Escherichia coli BL21(DE3)]
gi|253775323|ref|YP_003038154.1| tRNA-dihydrouridine synthase A [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254290735|ref|YP_003056483.1| tRNA-dihydrouridine synthase A [Escherichia coli BL21(DE3)]
gi|300929788|ref|ZP_07145240.1| tRNA dihydrouridine synthase A [Escherichia coli MS 187-1]
gi|312974158|ref|ZP_07788329.1| tRNA-dihydrouridine synthase A [Escherichia coli 1827-70]
gi|386707290|ref|YP_006171137.1| tRNA-dihydrouridine synthase A [Escherichia coli P12b]
gi|422767922|ref|ZP_16821647.1| tRNA dihydrouridine synthase A [Escherichia coli E1520]
gi|422787897|ref|ZP_16840634.1| tRNA dihydrouridine synthase A [Escherichia coli H489]
gi|422793652|ref|ZP_16846347.1| tRNA dihydrouridine synthase A [Escherichia coli TA007]
gi|425307883|ref|ZP_18697539.1| tRNA-dihydrouridine synthase [Escherichia coli N1]
gi|432487842|ref|ZP_19729744.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE212]
gi|432578320|ref|ZP_19814762.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE56]
gi|433175983|ref|ZP_20360478.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE232]
gi|169756881|gb|ACA79580.1| TIM-barrel protein, yjbN family [Escherichia coli ATCC 8739]
gi|242379577|emb|CAQ34398.1| tRNA-dihydrouridine synthase A [Escherichia coli BL21(DE3)]
gi|253326367|gb|ACT30969.1| TIM-barrel protein, yjbN family [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253980042|gb|ACT45712.1| tRNA-dihydrouridine synthase A [Escherichia coli BL21(DE3)]
gi|300462294|gb|EFK25787.1| tRNA dihydrouridine synthase A [Escherichia coli MS 187-1]
gi|310331692|gb|EFP98948.1| tRNA-dihydrouridine synthase A [Escherichia coli 1827-70]
gi|323935538|gb|EGB31869.1| tRNA dihydrouridine synthase A [Escherichia coli E1520]
gi|323960455|gb|EGB56088.1| tRNA dihydrouridine synthase A [Escherichia coli H489]
gi|323969817|gb|EGB65098.1| tRNA dihydrouridine synthase A [Escherichia coli TA007]
gi|383105458|gb|AFG42967.1| tRNA-dihydrouridine synthase A [Escherichia coli P12b]
gi|408224213|gb|EKI47936.1| tRNA-dihydrouridine synthase [Escherichia coli N1]
gi|431012815|gb|ELD26575.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE212]
gi|431110668|gb|ELE14586.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE56]
gi|431685672|gb|ELJ51240.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE232]
Length = 345
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|387614780|ref|YP_006117896.1| tRNA-dihydrouridine synthase A [Escherichia coli ETEC H10407]
gi|309704516|emb|CBJ03865.1| tRNA-dihydrouridine synthase A [Escherichia coli ETEC H10407]
Length = 345
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|209549798|ref|YP_002281715.1| tRNA-dihydrouridine synthase A [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209535554|gb|ACI55489.1| TIM-barrel protein, yjbN family [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 333
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 111 RSHMCGH-------SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAY 162
R + GH +L G+D L EA K++EP+ D I++N+GCP + G +GA
Sbjct: 49 RERLLGHDAAEHPLALQLGGSDPSKLAEAVKISEPYGYDEINLNVGCPSDRVQSGTFGAC 108
Query: 163 L 163
L
Sbjct: 109 L 109
>gi|432551644|ref|ZP_19788379.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE47]
gi|431087965|gb|ELD93877.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE47]
Length = 345
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|310818800|ref|YP_003951158.1| tRNA-dihydrouridine synthase a [Stigmatella aurantiaca DW4/3-1]
gi|309391872|gb|ADO69331.1| tRNA-dihydrouridine synthase A [Stigmatella aurantiaca DW4/3-1]
Length = 344
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 93 GAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQ 151
GA L D L LGF+ H +L G++ L EAA++ E D I++N+GCP
Sbjct: 43 GAVLHGDRDRL--LGFEPAEHPV--ALQLGGSEPAALAEAARIGEAWGYDEINLNVGCPS 98
Query: 152 MVAKRGHYGAYLQDDWPLLTNLVYS 176
+ G +GA L + L+ LV +
Sbjct: 99 DRVQSGRFGACLMAEPELVARLVAA 123
>gi|254796068|ref|YP_003080905.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
TW14359]
gi|254595468|gb|ACT74829.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
TW14359]
Length = 330
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 53 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 97
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 98 GCPSDRVQNGMFGACLMGNAQLVADCV 124
>gi|187731116|ref|YP_001882727.1| tRNA-dihydrouridine synthase A [Shigella boydii CDC 3083-94]
gi|187428108|gb|ACD07382.1| tRNA-dihydrouridine synthase A [Shigella boydii CDC 3083-94]
Length = 347
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 70 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 114
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 115 GCPSDRVQNGMFGACLMGNAQLVADCV 141
>gi|110807934|ref|YP_691454.1| tRNA-dihydrouridine synthase A [Shigella flexneri 5 str. 8401]
gi|384545679|ref|YP_005729743.1| yjbN family TIM-barrel protein [Shigella flexneri 2002017]
gi|417709427|ref|ZP_12358449.1| tRNA-dihydrouridine synthase A [Shigella flexneri VA-6]
gi|424840305|ref|ZP_18264942.1| tRNA-dihydrouridine synthase A [Shigella flexneri 5a str. M90T]
gi|110617482|gb|ABF06149.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|281603466|gb|ADA76450.1| TIM-barrel protein, yjbN family [Shigella flexneri 2002017]
gi|332998117|gb|EGK17721.1| tRNA-dihydrouridine synthase A [Shigella flexneri VA-6]
gi|383469357|gb|EID64378.1| tRNA-dihydrouridine synthase A [Shigella flexneri 5a str. M90T]
Length = 347
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 70 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 114
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 115 GCPSDRVQNGMFGACLMGNAQLVADCV 141
>gi|82546382|ref|YP_410329.1| tRNA-dihydrouridine synthase A [Shigella boydii Sb227]
gi|417684897|ref|ZP_12334230.1| tRNA-dihydrouridine synthase A [Shigella boydii 3594-74]
gi|420327529|ref|ZP_14829273.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
CCH060]
gi|420355686|ref|ZP_14856742.1| tRNA dihydrouridine synthase A family protein [Shigella boydii
4444-74]
gi|420383439|ref|ZP_14882851.1| tRNA dihydrouridine synthase A family protein [Shigella dysenteriae
225-75]
gi|421684504|ref|ZP_16124289.1| tRNA-dihydrouridine synthase A [Shigella flexneri 1485-80]
gi|81247793|gb|ABB68501.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|332087840|gb|EGI92966.1| tRNA-dihydrouridine synthase A [Shigella boydii 3594-74]
gi|391247559|gb|EIQ06807.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
CCH060]
gi|391271109|gb|EIQ29985.1| tRNA dihydrouridine synthase A family protein [Shigella boydii
4444-74]
gi|391296500|gb|EIQ54590.1| tRNA dihydrouridine synthase A family protein [Shigella dysenteriae
225-75]
gi|404336104|gb|EJZ62567.1| tRNA-dihydrouridine synthase A [Shigella flexneri 1485-80]
Length = 345
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|425320239|ref|ZP_18708993.1| tRNA-dihydrouridine synthase [Escherichia coli EC1736]
gi|408234364|gb|EKI57389.1| tRNA-dihydrouridine synthase [Escherichia coli EC1736]
Length = 331
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 99 GCPSDRVQNGMFGACLMGNAQLVADCV 125
>gi|425291271|ref|ZP_18682073.1| tRNA-dihydrouridine synthase [Escherichia coli 3006]
gi|408208406|gb|EKI33055.1| tRNA-dihydrouridine synthase [Escherichia coli 3006]
Length = 345
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|393771687|ref|ZP_10360156.1| dihydrouridine synthase TIM-barrel protein nifR3 [Novosphingobium
sp. Rr 2-17]
gi|392722939|gb|EIZ80335.1| dihydrouridine synthase TIM-barrel protein nifR3 [Novosphingobium
sp. Rr 2-17]
Length = 348
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
S+ G + + + EAAKL E I DIN+GCP G G+ L D PL T L+ +
Sbjct: 80 SMQLVGCEPEQMGEAAKLVEDRGAAIIDINMGCPVRKVVNGDAGSALMRDVPLATRLIEA 139
>gi|423728349|ref|ZP_17702088.1| tRNA-dihydrouridine synthase [Escherichia coli PA31]
gi|424150269|ref|ZP_17881622.1| tRNA-dihydrouridine synthase [Escherichia coli PA15]
gi|390696874|gb|EIN71315.1| tRNA-dihydrouridine synthase [Escherichia coli PA15]
gi|390736081|gb|EIO07432.1| tRNA-dihydrouridine synthase [Escherichia coli PA31]
Length = 345
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|419812623|ref|ZP_14337487.1| tRNA-dihydrouridine synthase A [Escherichia coli O32:H37 str. P4]
gi|385154505|gb|EIF16517.1| tRNA-dihydrouridine synthase A [Escherichia coli O32:H37 str. P4]
Length = 339
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 62 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 106
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 107 GCPSDRVQNGMFGACLMGNAQLVADCV 133
>gi|419212642|ref|ZP_13755697.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8C]
gi|419229763|ref|ZP_13772590.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9A]
gi|419235432|ref|ZP_13778190.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9B]
gi|419240583|ref|ZP_13783281.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9C]
gi|419246276|ref|ZP_13788900.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9D]
gi|419252005|ref|ZP_13794566.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9E]
gi|419874397|ref|ZP_14396333.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9534]
gi|419884759|ref|ZP_14405636.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9545]
gi|419902433|ref|ZP_14421648.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM9942]
gi|419909781|ref|ZP_14428319.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10026]
gi|420099908|ref|ZP_14611111.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9455]
gi|420107627|ref|ZP_14617949.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9553]
gi|424758029|ref|ZP_18185751.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CFSAN001630]
gi|378046718|gb|EHW09092.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8C]
gi|378066995|gb|EHW29122.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9A]
gi|378072023|gb|EHW34087.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9B]
gi|378078096|gb|EHW40087.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9C]
gi|378085455|gb|EHW47342.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9D]
gi|378088356|gb|EHW50210.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC9E]
gi|388351112|gb|EIL16390.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9534]
gi|388352870|gb|EIL17953.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9545]
gi|388372678|gb|EIL36095.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10026]
gi|388373883|gb|EIL37107.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM9942]
gi|394412068|gb|EJE86246.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9553]
gi|394422115|gb|EJE95516.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CVM9455]
gi|421948823|gb|EKU05823.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H11 str.
CFSAN001630]
Length = 345
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNTQLVADCV 139
>gi|365101882|ref|ZP_09332486.1| tRNA-dihydrouridine synthase A [Citrobacter freundii 4_7_47CFAA]
gi|363646657|gb|EHL85894.1| tRNA-dihydrouridine synthase A [Citrobacter freundii 4_7_47CFAA]
Length = 332
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEQRGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|416779333|ref|ZP_11876338.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
G5101]
gi|320638805|gb|EFX08451.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
G5101]
Length = 339
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 62 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 106
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 107 GCPSDRVQNGMFGACLMGNAQLVADCV 133
>gi|283787222|ref|YP_003367087.1| tRNA-dihydrouridine synthase A [Citrobacter rodentium ICC168]
gi|282950676|emb|CBG90350.1| putative tRNA-dihydrouridine synthase A [Citrobacter rodentium
ICC168]
Length = 345
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY ++ PL +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSGEEHPLALQLG---------------GSDPAQLAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|429859913|gb|ELA34669.1| putative trna dihydrouridine synthase [Colletotrichum
gloeosporioides Nara gc5]
Length = 357
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 82 CPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCD 141
P +++K + + +D ++L T+ + F N L ++ LA P+ +
Sbjct: 23 TPMILSKEFNRNNFARD-----SDLTISTQGVQPPTIVQFGSNSPIELARSSSLAAPYVN 77
Query: 142 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
G+D+N GCPQ A GA L + L+ ++V
Sbjct: 78 GVDLNCGCPQSWACAETLGAALMEKRELVRDMV 110
>gi|386616879|ref|YP_006136545.1| tRNA-dihydrouridine synthase A DusA [Escherichia coli UMNK88]
gi|332346048|gb|AEE59382.1| tRNA-dihydrouridine synthase A DusA [Escherichia coli UMNK88]
Length = 339
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 62 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 106
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 107 GCPSDRVQNGMFGACLMGNAQLVADCV 133
>gi|444353700|ref|YP_007389844.1| tRNA dihydrouridine synthase A (EC 1.-.-.-) [Enterobacter aerogenes
EA1509E]
gi|443904530|emb|CCG32304.1| tRNA dihydrouridine synthase A (EC 1.-.-.-) [Enterobacter aerogenes
EA1509E]
Length = 354
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 77 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 121
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + +
Sbjct: 122 GCPSDRVQNGMFGACLMGNAALVADCI 148
>gi|432856293|ref|ZP_20083733.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE144]
gi|431396119|gb|ELG79605.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE144]
Length = 345
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|395231244|ref|ZP_10409536.1| tRNA-dihydrouridine synthase A [Citrobacter sp. A1]
gi|424731198|ref|ZP_18159785.1| trna-dihydrouridine synthase a [Citrobacter sp. L17]
gi|394715022|gb|EJF20892.1| tRNA-dihydrouridine synthase A [Citrobacter sp. A1]
gi|422894384|gb|EKU34197.1| trna-dihydrouridine synthase a [Citrobacter sp. L17]
Length = 332
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEQRGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|420339091|ref|ZP_14840642.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-315]
gi|391256784|gb|EIQ15907.1| tRNA dihydrouridine synthase A family protein [Shigella flexneri
K-315]
Length = 345
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|417297156|ref|ZP_12084403.1| tRNA dihydrouridine synthase A [Escherichia coli 900105 (10e)]
gi|419218451|ref|ZP_13761435.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8D]
gi|419257779|ref|ZP_13800272.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10A]
gi|420112425|ref|ZP_14622224.1| hypothetical protein ECO10021_28435 [Escherichia coli O26:H11 str.
CVM10021]
gi|420122253|ref|ZP_14631241.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10030]
gi|420126332|ref|ZP_14635068.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10224]
gi|420130440|ref|ZP_14638932.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM9952]
gi|424751353|ref|ZP_18179383.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CFSAN001629]
gi|378056767|gb|EHW19006.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8D]
gi|378095794|gb|EHW57577.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC10A]
gi|386260600|gb|EIJ16074.1| tRNA dihydrouridine synthase A [Escherichia coli 900105 (10e)]
gi|394392213|gb|EJE69002.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10224]
gi|394414595|gb|EJE88536.1| hypothetical protein ECO10021_28435 [Escherichia coli O26:H11 str.
CVM10021]
gi|394422403|gb|EJE95764.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM10030]
gi|394433682|gb|EJF05689.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CVM9952]
gi|421939583|gb|EKT97098.1| tRNA-dihydrouridine synthase A [Escherichia coli O26:H11 str.
CFSAN001629]
Length = 339
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 62 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 106
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 107 GCPSDRVQNGMFGACLMGNTQLVADCV 133
>gi|238789911|ref|ZP_04633691.1| tRNA-dihydrouridine synthase A [Yersinia frederiksenii ATCC 33641]
gi|238721984|gb|EEQ13644.1| tRNA-dihydrouridine synthase A [Yersinia frederiksenii ATCC 33641]
Length = 343
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 23/126 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+ Y AY + D P+ +LG G+D + L AKLAE + +++N+
Sbjct: 62 KADYLAYSEQDHPVALQLG---------------GSDPQALAHCAKLAEQRGYNEVNLNV 106
Query: 148 GCPQMVAKRGHYGAYLQDDWPL-------LTNLVYSPNMVHFVIAEPHCDGNDINIGCPQ 200
GCP + G +GA L + L + ++V P V I D + Q
Sbjct: 107 GCPSDRVQNGRFGACLMAEASLVADCIKAMRDVVSIPVTVKTRIGIDQLDSYEFLCEFVQ 166
Query: 201 MVAKRG 206
VA+RG
Sbjct: 167 TVAERG 172
>gi|455644996|gb|EMF24086.1| tRNA-dihydrouridine synthase A [Citrobacter freundii GTC 09479]
Length = 332
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEQRGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|416270359|ref|ZP_11642755.1| tRNA dihydrouridine synthase A [Shigella dysenteriae CDC 74-1112]
gi|416298763|ref|ZP_11652086.1| tRNA dihydrouridine synthase A [Shigella flexneri CDC 796-83]
gi|320174478|gb|EFW49618.1| tRNA dihydrouridine synthase A [Shigella dysenteriae CDC 74-1112]
gi|320185261|gb|EFW60037.1| tRNA dihydrouridine synthase A [Shigella flexneri CDC 796-83]
Length = 339
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 62 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 106
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 107 GCPSDRVQNGMFGACLMGNAQLVADCV 133
>gi|312965642|ref|ZP_07779871.1| tRNA-dihydrouridine synthase A [Escherichia coli 2362-75]
gi|417230595|ref|ZP_12032092.1| tRNA dihydrouridine synthase A [Escherichia coli 5.0959]
gi|417758551|ref|ZP_12406606.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2B]
gi|418999881|ref|ZP_13547451.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1A]
gi|419004949|ref|ZP_13552451.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1B]
gi|419010602|ref|ZP_13558003.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1C]
gi|419011206|ref|ZP_13558576.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC1D]
gi|419021249|ref|ZP_13568540.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1E]
gi|419026721|ref|ZP_13573927.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC2A]
gi|419031864|ref|ZP_13578996.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2C]
gi|419037570|ref|ZP_13584636.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2D]
gi|419042558|ref|ZP_13589567.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2E]
gi|419297634|ref|ZP_13839663.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC11B]
gi|419342682|ref|ZP_13884128.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12E]
gi|444972304|ref|ZP_21289626.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1793]
gi|312289616|gb|EFR17507.1| tRNA-dihydrouridine synthase A [Escherichia coli 2362-75]
gi|377838052|gb|EHU03178.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1A]
gi|377838136|gb|EHU03260.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1C]
gi|377840340|gb|EHU05413.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1B]
gi|377855260|gb|EHU20133.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC1E]
gi|377856032|gb|EHU20893.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC2A]
gi|377864740|gb|EHU29532.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC1D]
gi|377869597|gb|EHU34308.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2B]
gi|377871003|gb|EHU35671.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2C]
gi|377872882|gb|EHU37524.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2D]
gi|377885003|gb|EHU49509.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC2E]
gi|378137427|gb|EHW98703.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC11B]
gi|378181451|gb|EHX42122.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC12E]
gi|386205848|gb|EII10355.1| tRNA dihydrouridine synthase A [Escherichia coli 5.0959]
gi|444574947|gb|ELV51205.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1793]
Length = 345
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|331650053|ref|ZP_08351126.1| tRNA-dihydrouridine synthase A [Escherichia coli M605]
gi|419863045|ref|ZP_14385606.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H25 str.
CVM9340]
gi|427807268|ref|ZP_18974335.1| hypothetical protein BN16_00701 [Escherichia coli chi7122]
gi|432394795|ref|ZP_19637605.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE21]
gi|432614135|ref|ZP_19850284.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE72]
gi|443615558|ref|YP_007379414.1| tRNA-dihydrouridine synthase A [Escherichia coli APEC O78]
gi|331040998|gb|EGI13155.1| tRNA-dihydrouridine synthase A [Escherichia coli M605]
gi|388343546|gb|EIL09478.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H25 str.
CVM9340]
gi|412965450|emb|CCK49383.1| hypothetical protein BN16_00701 [Escherichia coli chi7122]
gi|430912545|gb|ELC33718.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE21]
gi|431145456|gb|ELE47106.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE72]
gi|443420066|gb|AGC84970.1| tRNA-dihydrouridine synthase A [Escherichia coli APEC O78]
Length = 345
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|260870808|ref|YP_003237210.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H- str.
11128]
gi|415823434|ref|ZP_11511809.1| tRNA-dihydrouridine synthase A [Escherichia coli OK1180]
gi|417200988|ref|ZP_12017672.1| tRNA dihydrouridine synthase A [Escherichia coli 4.0522]
gi|417206238|ref|ZP_12019316.1| tRNA dihydrouridine synthase A [Escherichia coli JB1-95]
gi|417594583|ref|ZP_12245268.1| tRNA-dihydrouridine synthase A [Escherichia coli 2534-86]
gi|419199876|ref|ZP_13743157.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC8A]
gi|419206262|ref|ZP_13749409.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8B]
gi|419224200|ref|ZP_13767105.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8E]
gi|419889320|ref|ZP_14409738.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9570]
gi|419893875|ref|ZP_14413826.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9574]
gi|420089152|ref|ZP_14600989.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9602]
gi|420094959|ref|ZP_14606505.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9634]
gi|424773293|ref|ZP_18200356.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CFSAN001632]
gi|257767164|dbj|BAI38659.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H- str.
11128]
gi|323175935|gb|EFZ61527.1| tRNA-dihydrouridine synthase A [Escherichia coli OK1180]
gi|345330857|gb|EGW63320.1| tRNA-dihydrouridine synthase A [Escherichia coli 2534-86]
gi|378041616|gb|EHW04075.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC8A]
gi|378042064|gb|EHW04516.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8B]
gi|378059387|gb|EHW21587.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC8E]
gi|386187447|gb|EIH76266.1| tRNA dihydrouridine synthase A [Escherichia coli 4.0522]
gi|386197721|gb|EIH91920.1| tRNA dihydrouridine synthase A [Escherichia coli JB1-95]
gi|388357917|gb|EIL22415.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9570]
gi|388365760|gb|EIL29536.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9574]
gi|394388842|gb|EJE66080.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9602]
gi|394394652|gb|EJE71212.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CVM9634]
gi|421936655|gb|EKT94316.1| tRNA-dihydrouridine synthase A [Escherichia coli O111:H8 str.
CFSAN001632]
Length = 345
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNTQLVADCV 139
>gi|168784662|ref|ZP_02809669.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC869]
gi|168798291|ref|ZP_02823298.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC508]
gi|261225167|ref|ZP_05939448.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255581|ref|ZP_05948114.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
FRIK966]
gi|416319470|ref|ZP_11662022.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC1212]
gi|416328425|ref|ZP_11668185.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str. 1125]
gi|419072340|ref|ZP_13617933.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3E]
gi|419083382|ref|ZP_13628820.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4A]
gi|419095770|ref|ZP_13641039.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4C]
gi|419101535|ref|ZP_13646716.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4D]
gi|419106665|ref|ZP_13651781.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4E]
gi|420272590|ref|ZP_14774932.1| tRNA-dihydrouridine synthase [Escherichia coli PA22]
gi|420278224|ref|ZP_14780497.1| tRNA-dihydrouridine synthase [Escherichia coli PA40]
gi|420284688|ref|ZP_14786908.1| tRNA-dihydrouridine synthase [Escherichia coli TW10246]
gi|420295243|ref|ZP_14797347.1| tRNA-dihydrouridine synthase [Escherichia coli TW11039]
gi|420301158|ref|ZP_14803196.1| tRNA-dihydrouridine synthase [Escherichia coli TW09109]
gi|420312442|ref|ZP_14814363.1| tRNA-dihydrouridine synthase [Escherichia coli EC1738]
gi|420318167|ref|ZP_14820029.1| tRNA-dihydrouridine synthase [Escherichia coli EC1734]
gi|421815159|ref|ZP_16250851.1| tRNA-dihydrouridine synthase [Escherichia coli 8.0416]
gi|421826963|ref|ZP_16262309.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK920]
gi|424086814|ref|ZP_17823274.1| tRNA-dihydrouridine synthase [Escherichia coli FDA517]
gi|424093232|ref|ZP_17829131.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1996]
gi|424099926|ref|ZP_17835150.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1985]
gi|424106124|ref|ZP_17840824.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1990]
gi|424131049|ref|ZP_17863927.1| tRNA-dihydrouridine synthase [Escherichia coli PA9]
gi|424137366|ref|ZP_17869776.1| tRNA-dihydrouridine synthase [Escherichia coli PA10]
gi|424336356|ref|ZP_17898537.1| tRNA-dihydrouridine synthase [Escherichia coli PA28]
gi|424465330|ref|ZP_17915614.1| tRNA-dihydrouridine synthase [Escherichia coli PA39]
gi|424471550|ref|ZP_17921324.1| tRNA-dihydrouridine synthase [Escherichia coli PA41]
gi|424483824|ref|ZP_17932779.1| tRNA-dihydrouridine synthase [Escherichia coli TW07945]
gi|424490020|ref|ZP_17938529.1| tRNA-dihydrouridine synthase [Escherichia coli TW09098]
gi|424496739|ref|ZP_17944220.1| tRNA-dihydrouridine synthase [Escherichia coli TW09195]
gi|424517029|ref|ZP_17961581.1| tRNA-dihydrouridine synthase [Escherichia coli TW14313]
gi|424523145|ref|ZP_17967224.1| tRNA-dihydrouridine synthase [Escherichia coli TW14301]
gi|424559791|ref|ZP_18001160.1| tRNA-dihydrouridine synthase [Escherichia coli EC4436]
gi|424566113|ref|ZP_18007091.1| tRNA-dihydrouridine synthase [Escherichia coli EC4437]
gi|424584222|ref|ZP_18023844.1| tRNA-dihydrouridine synthase [Escherichia coli EC1863]
gi|425106972|ref|ZP_18509261.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
5.2239]
gi|425134666|ref|ZP_18535494.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.2524]
gi|425146938|ref|ZP_18546907.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
10.0869]
gi|425158951|ref|ZP_18558190.1| tRNA-dihydrouridine synthase [Escherichia coli PA34]
gi|425183121|ref|ZP_18580793.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1999]
gi|425196152|ref|ZP_18592897.1| tRNA-dihydrouridine synthase [Escherichia coli NE1487]
gi|425202631|ref|ZP_18598814.1| tRNA-dihydrouridine synthase [Escherichia coli NE037]
gi|425202998|ref|ZP_18599160.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK2001]
gi|425245851|ref|ZP_18639134.1| tRNA-dihydrouridine synthase [Escherichia coli MA6]
gi|425257842|ref|ZP_18650313.1| tRNA-dihydrouridine synthase [Escherichia coli CB7326]
gi|425264095|ref|ZP_18656062.1| tRNA-dihydrouridine synthase [Escherichia coli EC96038]
gi|425297571|ref|ZP_18687665.1| tRNA-dihydrouridine synthase [Escherichia coli PA38]
gi|425314257|ref|ZP_18703401.1| tRNA-dihydrouridine synthase [Escherichia coli EC1735]
gi|425326383|ref|ZP_18714685.1| tRNA-dihydrouridine synthase [Escherichia coli EC1737]
gi|425375795|ref|ZP_18760409.1| tRNA-dihydrouridine synthase [Escherichia coli EC1864]
gi|425388680|ref|ZP_18772216.1| tRNA-dihydrouridine synthase [Escherichia coli EC1866]
gi|425395410|ref|ZP_18778492.1| tRNA-dihydrouridine synthase [Escherichia coli EC1868]
gi|425401465|ref|ZP_18784147.1| tRNA-dihydrouridine synthase [Escherichia coli EC1869]
gi|425407562|ref|ZP_18789759.1| tRNA-dihydrouridine synthase [Escherichia coli EC1870]
gi|428949936|ref|ZP_19022183.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.1467]
gi|428968634|ref|ZP_19039313.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.0091]
gi|428974385|ref|ZP_19044672.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.0039]
gi|429005071|ref|ZP_19073105.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0183]
gi|429035578|ref|ZP_19101074.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0939]
gi|429041686|ref|ZP_19106749.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0932]
gi|429057941|ref|ZP_19122198.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.1742]
gi|429070193|ref|ZP_19133603.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0672]
gi|444927832|ref|ZP_21247076.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
09BKT078844]
gi|444933457|ref|ZP_21252446.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0814]
gi|444938898|ref|ZP_21257611.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0815]
gi|444944527|ref|ZP_21262995.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0816]
gi|444982946|ref|ZP_21299834.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
ATCC 700728]
gi|444998870|ref|ZP_21315354.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA13]
gi|445004425|ref|ZP_21320798.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA2]
gi|445014945|ref|ZP_21331033.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA48]
gi|445020804|ref|ZP_21336751.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA8]
gi|445026240|ref|ZP_21342046.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
7.1982]
gi|445037097|ref|ZP_21352606.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1762]
gi|189375043|gb|EDU93459.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC869]
gi|189379226|gb|EDU97642.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC508]
gi|320190826|gb|EFW65476.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC1212]
gi|326341906|gb|EGD65689.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str. 1125]
gi|377905841|gb|EHU70100.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3E]
gi|377922418|gb|EHU86404.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4A]
gi|377936091|gb|EHU99885.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4D]
gi|377936617|gb|EHV00411.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4C]
gi|377942952|gb|EHV06675.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4E]
gi|390636437|gb|EIN16021.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1996]
gi|390637605|gb|EIN17147.1| tRNA-dihydrouridine synthase [Escherichia coli FDA517]
gi|390655447|gb|EIN33390.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1985]
gi|390658220|gb|EIN36019.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1990]
gi|390679983|gb|EIN55839.1| tRNA-dihydrouridine synthase [Escherichia coli PA9]
gi|390691203|gb|EIN65962.1| tRNA-dihydrouridine synthase [Escherichia coli PA10]
gi|390710719|gb|EIN83721.1| tRNA-dihydrouridine synthase [Escherichia coli PA22]
gi|390723479|gb|EIN96074.1| tRNA-dihydrouridine synthase [Escherichia coli PA28]
gi|390754989|gb|EIO24539.1| tRNA-dihydrouridine synthase [Escherichia coli PA40]
gi|390756577|gb|EIO26082.1| tRNA-dihydrouridine synthase [Escherichia coli PA39]
gi|390761239|gb|EIO30536.1| tRNA-dihydrouridine synthase [Escherichia coli PA41]
gi|390784577|gb|EIO52144.1| tRNA-dihydrouridine synthase [Escherichia coli TW07945]
gi|390792323|gb|EIO59677.1| tRNA-dihydrouridine synthase [Escherichia coli TW11039]
gi|390796476|gb|EIO63752.1| tRNA-dihydrouridine synthase [Escherichia coli TW10246]
gi|390799262|gb|EIO66435.1| tRNA-dihydrouridine synthase [Escherichia coli TW09098]
gi|390803893|gb|EIO70880.1| tRNA-dihydrouridine synthase [Escherichia coli TW09109]
gi|390820925|gb|EIO87170.1| tRNA-dihydrouridine synthase [Escherichia coli TW09195]
gi|390839958|gb|EIP04034.1| tRNA-dihydrouridine synthase [Escherichia coli TW14313]
gi|390842198|gb|EIP06064.1| tRNA-dihydrouridine synthase [Escherichia coli TW14301]
gi|390879811|gb|EIP40551.1| tRNA-dihydrouridine synthase [Escherichia coli EC4436]
gi|390889585|gb|EIP49310.1| tRNA-dihydrouridine synthase [Escherichia coli EC4437]
gi|390897500|gb|EIP56820.1| tRNA-dihydrouridine synthase [Escherichia coli EC1738]
gi|390905059|gb|EIP64010.1| tRNA-dihydrouridine synthase [Escherichia coli EC1734]
gi|390914786|gb|EIP73317.1| tRNA-dihydrouridine synthase [Escherichia coli EC1863]
gi|408061712|gb|EKG96220.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK920]
gi|408062719|gb|EKG97220.1| tRNA-dihydrouridine synthase [Escherichia coli PA34]
gi|408093861|gb|EKH26909.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1999]
gi|408105171|gb|EKH37371.1| tRNA-dihydrouridine synthase [Escherichia coli NE1487]
gi|408111993|gb|EKH43683.1| tRNA-dihydrouridine synthase [Escherichia coli NE037]
gi|408133493|gb|EKH63390.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK2001]
gi|408156706|gb|EKH84906.1| tRNA-dihydrouridine synthase [Escherichia coli MA6]
gi|408169757|gb|EKH97002.1| tRNA-dihydrouridine synthase [Escherichia coli CB7326]
gi|408176509|gb|EKI03357.1| tRNA-dihydrouridine synthase [Escherichia coli EC96038]
gi|408209314|gb|EKI33913.1| tRNA-dihydrouridine synthase [Escherichia coli PA38]
gi|408223192|gb|EKI46984.1| tRNA-dihydrouridine synthase [Escherichia coli EC1735]
gi|408236855|gb|EKI59731.1| tRNA-dihydrouridine synthase [Escherichia coli EC1737]
gi|408287627|gb|EKJ06484.1| tRNA-dihydrouridine synthase [Escherichia coli EC1864]
gi|408302509|gb|EKJ20013.1| tRNA-dihydrouridine synthase [Escherichia coli EC1868]
gi|408303695|gb|EKJ21144.1| tRNA-dihydrouridine synthase [Escherichia coli EC1866]
gi|408315132|gb|EKJ31461.1| tRNA-dihydrouridine synthase [Escherichia coli EC1869]
gi|408320768|gb|EKJ36839.1| tRNA-dihydrouridine synthase [Escherichia coli EC1870]
gi|408543932|gb|EKK21405.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
5.2239]
gi|408577476|gb|EKK53049.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
8.2524]
gi|408587861|gb|EKK62485.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
10.0869]
gi|408598120|gb|EKK72080.1| tRNA-dihydrouridine synthase [Escherichia coli 8.0416]
gi|427203743|gb|EKV74041.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.1467]
gi|427216870|gb|EKV85959.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.0091]
gi|427223476|gb|EKV92220.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.0039]
gi|427254977|gb|EKW21253.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
95.0183]
gi|427279883|gb|EKW44283.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0939]
gi|427288468|gb|EKW52099.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0932]
gi|427308480|gb|EKW70861.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
97.1742]
gi|427314711|gb|EKW76747.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0672]
gi|444534568|gb|ELV14789.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0814]
gi|444535507|gb|ELV15578.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
09BKT078844]
gi|444544890|gb|ELV23876.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0815]
gi|444553672|gb|ELV31276.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0816]
gi|444588248|gb|ELV63633.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
ATCC 700728]
gi|444602466|gb|ELV77207.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA13]
gi|444611520|gb|ELV85847.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA2]
gi|444619373|gb|ELV93414.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA48]
gi|444625634|gb|ELV99454.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA8]
gi|444634484|gb|ELW07956.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
7.1982]
gi|444641079|gb|ELW14320.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1762]
Length = 345
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|145698340|ref|NP_418473.2| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
MG1655]
gi|238903158|ref|YP_002928954.1| tRNA-dihydrouridine synthase A [Escherichia coli BW2952]
gi|293402687|ref|ZP_06646784.1| tRNA dihydrouridine synthase A [Escherichia coli FVEC1412]
gi|293407781|ref|ZP_06651621.1| tRNA-dihydrouridine synthase A [Escherichia coli B354]
gi|293476353|ref|ZP_06664761.1| tRNA-dihydrouridine synthase A [Escherichia coli B088]
gi|298378215|ref|ZP_06988099.1| tRNA-dihydrouridine synthase A [Escherichia coli FVEC1302]
gi|383181363|ref|YP_005459368.1| tRNA-dihydrouridine synthase A [Shigella sonnei 53G]
gi|387609842|ref|YP_006098698.1| tRNA-dihydrouridine synthase A [Escherichia coli 042]
gi|419872880|ref|ZP_14394895.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H2 str.
CVM9450]
gi|444961024|ref|ZP_21278826.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1753]
gi|444988293|ref|ZP_21305054.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA11]
gi|450229414|ref|ZP_21897771.1| tRNA-dihydrouridine synthase A [Escherichia coli O08]
gi|450254166|ref|ZP_21902519.1| tRNA-dihydrouridine synthase A [Escherichia coli S17]
gi|3183570|sp|P32695.3|DUSA_ECOLI RecName: Full=tRNA-dihydrouridine synthase A
gi|38604936|sp|Q8X5V6.2|DUSA_ECO57 RecName: Full=tRNA-dihydrouridine synthase A
gi|145693211|gb|AAC77019.2| tRNA-dihydrouridine synthase A [Escherichia coli str. K-12 substr.
MG1655]
gi|238863713|gb|ACR65711.1| tRNA-dihydrouridine synthase A [Escherichia coli BW2952]
gi|284924142|emb|CBG37241.1| tRNA-dihydrouridine synthase A [Escherichia coli 042]
gi|291320806|gb|EFE60248.1| tRNA-dihydrouridine synthase A [Escherichia coli B088]
gi|291429602|gb|EFF02616.1| tRNA dihydrouridine synthase A [Escherichia coli FVEC1412]
gi|291472032|gb|EFF14514.1| tRNA-dihydrouridine synthase A [Escherichia coli B354]
gi|298280549|gb|EFI22050.1| tRNA-dihydrouridine synthase A [Escherichia coli FVEC1302]
gi|388333035|gb|EIK99678.1| tRNA-dihydrouridine synthase A [Escherichia coli O103:H2 str.
CVM9450]
gi|444568211|gb|ELV44901.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1753]
gi|444588723|gb|ELV64087.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA11]
gi|449313057|gb|EMD03287.1| tRNA-dihydrouridine synthase A [Escherichia coli O08]
gi|449313516|gb|EMD03722.1| tRNA-dihydrouridine synthase A [Escherichia coli S17]
Length = 330
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 53 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 97
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 98 GCPSDRVQNGMFGACLMGNAQLVADCV 124
>gi|432916245|ref|ZP_20121217.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE173]
gi|432923572|ref|ZP_20126126.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE175]
gi|431450457|gb|ELH30943.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE173]
gi|431451570|gb|ELH32042.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE175]
Length = 345
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|421847475|ref|ZP_16280612.1| tRNA-dihydrouridine synthase A [Citrobacter freundii ATCC 8090 =
MTCC 1658]
gi|411771129|gb|EKS54842.1| tRNA-dihydrouridine synthase A [Citrobacter freundii ATCC 8090 =
MTCC 1658]
Length = 332
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEQRGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|416900741|ref|ZP_11929910.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_7v]
gi|417116352|ref|ZP_11967213.1| tRNA dihydrouridine synthase A [Escherichia coli 1.2741]
gi|422801769|ref|ZP_16850264.1| tRNA dihydrouridine synthase A [Escherichia coli M863]
gi|323965711|gb|EGB61163.1| tRNA dihydrouridine synthase A [Escherichia coli M863]
gi|327250393|gb|EGE62106.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_7v]
gi|386138896|gb|EIG80051.1| tRNA dihydrouridine synthase A [Escherichia coli 1.2741]
Length = 345
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAETRGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|312884652|ref|ZP_07744353.1| tRNA-dihydrouridine synthase A [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367565|gb|EFP95116.1| tRNA-dihydrouridine synthase A [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 333
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G + AY Q++ P+ +LG G++ ++L + AKLAE D I++N+
Sbjct: 54 KGDFLAYNQEEHPVALQLG---------------GSNPQDLAQCAKLAEQRGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 99 GCPSDRVQNGRFGACLMAEPQLVADCV 125
>gi|66802582|ref|XP_635163.1| tRNA-dihydrouridine synthase 4-like protein [Dictyostelium
discoideum AX4]
gi|60463479|gb|EAL61664.1| tRNA-dihydrouridine synthase 4-like protein [Dictyostelium
discoideum AX4]
Length = 344
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 21/113 (18%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ F N+++ L AA+ + +C GIDIN GCPQ + +GA NL+ P
Sbjct: 114 VQFGVNNAEELVSAAEKVKDYCQGIDINCGCPQRWVMKEGFGA----------NLLLHPE 163
Query: 179 MVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGI 231
++ ++ + IN P ++ + + L+D EL K A +G+
Sbjct: 164 RIYDMVKQ-------INNRVPIPISIKIRVQSDLKD----TIELAKRAERIGV 205
>gi|432367623|ref|ZP_19610732.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE10]
gi|432528952|ref|ZP_19766017.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE233]
gi|432668481|ref|ZP_19904044.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE119]
gi|430890145|gb|ELC12782.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE10]
gi|431058914|gb|ELD68291.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE233]
gi|431215501|gb|ELF13189.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE119]
Length = 345
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|38604722|sp|Q7UBC5.2|DUSA_SHIFL RecName: Full=tRNA-dihydrouridine synthase A
Length = 330
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 53 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 97
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 98 GCPSDRVQNGMFGACLMGNAQLVADCV 124
>gi|30064638|ref|NP_838809.1| tRNA-dihydrouridine synthase A [Shigella flexneri 2a str. 2457T]
gi|56480527|ref|NP_709871.2| tRNA-dihydrouridine synthase A [Shigella flexneri 2a str. 301]
gi|30042897|gb|AAP18620.1| hypothetical protein S3574 [Shigella flexneri 2a str. 2457T]
gi|56384078|gb|AAN45578.2| conserved hypothetical protein [Shigella flexneri 2a str. 301]
Length = 339
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 62 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 106
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 107 GCPSDRVQNGMFGACLMGNAQLVADCV 133
>gi|420283680|ref|ZP_14785905.1| tRNA-dihydrouridine synthase [Escherichia coli TW06591]
gi|420301698|ref|ZP_14803733.1| tRNA-dihydrouridine synthase [Escherichia coli TW10119]
gi|444977557|ref|ZP_21294612.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1805]
gi|390778347|gb|EIO46105.1| tRNA-dihydrouridine synthase [Escherichia coli TW06591]
gi|390820291|gb|EIO86597.1| tRNA-dihydrouridine synthase [Escherichia coli TW10119]
gi|444587450|gb|ELV62901.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.1805]
Length = 345
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|342890419|gb|EGU89237.1| hypothetical protein FOXB_00190 [Fusarium oxysporum Fo5176]
Length = 388
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 72 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTE 131
H G+D+ P ++AK + ++ +D ++L T + F N L
Sbjct: 45 HKYGVDL-CWSPMILAKEFNRSSFARD-----SDLTISTTPKQPPTIVQFGANVPLELAR 98
Query: 132 AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
A+ L P+ G+D+N GCPQ A GA L + L+ ++V
Sbjct: 99 ASALVAPYTQGVDLNCGCPQSWACAETLGAALMNHRELVRDMV 141
>gi|262401531|ref|ZP_06078098.1| tRNA-dihydrouridine synthase [Vibrio sp. RC586]
gi|262352246|gb|EEZ01375.1| tRNA-dihydrouridine synthase [Vibrio sp. RC586]
Length = 316
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
RG + AY Q++ P+ +L F G++ K+L AKLA+ D I++N+
Sbjct: 36 RGDFLAYNQEEHPV---------------ALQFGGSNPKDLAHCAKLAQDRGYDEINLNV 80
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
GCP + G +GA L + L+ V + V
Sbjct: 81 GCPSDRVQNGRFGACLMAEPDLVAECVAAMRSV 113
>gi|419078276|ref|ZP_13623767.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3F]
gi|419134258|ref|ZP_13679076.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5D]
gi|425270107|ref|ZP_18661709.1| tRNA-dihydrouridine synthase [Escherichia coli 5412]
gi|377916323|gb|EHU80410.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3F]
gi|377969396|gb|EHV32773.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5D]
gi|408179558|gb|EKI06216.1| tRNA-dihydrouridine synthase [Escherichia coli 5412]
Length = 345
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|331675581|ref|ZP_08376328.1| tRNA-dihydrouridine synthase A [Escherichia coli TA280]
gi|331067189|gb|EGI38597.1| tRNA-dihydrouridine synthase A [Escherichia coli TA280]
Length = 345
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|159110447|ref|XP_001705482.1| tRNA dihydrouridine synthase, putative [Giardia lamblia ATCC 50803]
gi|157433567|gb|EDO77808.1| tRNA dihydrouridine synthase, putative [Giardia lamblia ATCC 50803]
Length = 462
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 16 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPL 61
D +++N+GCPQ VA RG YGAYL L E++ V+ L
Sbjct: 107 DVVELNMGCPQAVALRGKYGAYLMGHLDLAEEILRTLVAVTARSGL 152
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 22/33 (66%)
Query: 74 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
D +++N+GCPQ VA RG YGAYL L E+
Sbjct: 107 DVVELNMGCPQAVALRGKYGAYLMGHLDLAEEI 139
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 190 DGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGILDNTG 236
D ++N+GCPQ VA RG YGAYL L E+ + LV + +G
Sbjct: 107 DVVELNMGCPQAVALRGKYGAYLMGHLDLAEEI--LRTLVAVTARSG 151
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 141 DGIDINIGCPQMVAKRGHYGAYL 163
D +++N+GCPQ VA RG YGAYL
Sbjct: 107 DVVELNMGCPQAVALRGKYGAYL 129
>gi|326911232|ref|XP_003201965.1| PREDICTED: tRNA-dihydrouridine synthase 4-like [Meleagris
gallopavo]
Length = 262
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F +++ L +AA L P DG+D+N GCPQ A YGA L + L+ ++V
Sbjct: 29 VQFAAKEAQVLCDAALLVCPFADGVDLNCGCPQRWAMAEGYGACLINKPELVQDMV 84
>gi|238918205|ref|YP_002931719.1| Dihydrouridine synthase (Dus) [Edwardsiella ictaluri 93-146]
gi|238867773|gb|ACR67484.1| Dihydrouridine synthase (Dus) [Edwardsiella ictaluri 93-146]
Length = 349
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ PL +LG G++ +L A+LAE D I++N+
Sbjct: 71 KGDYLAYCEEEHPLALQLG---------------GSNPADLARCARLAETRGYDEINLNV 115
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G +GA L + L+ + V +
Sbjct: 116 GCPSDRVQNGRFGACLMGEAQLVADCVKA 144
>gi|422783599|ref|ZP_16836383.1| tRNA dihydrouridine synthase A [Escherichia coli TW10509]
gi|323975321|gb|EGB70424.1| tRNA dihydrouridine synthase A [Escherichia coli TW10509]
Length = 345
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAETRGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|331680980|ref|ZP_08381617.1| tRNA-dihydrouridine synthase A [Escherichia coli H299]
gi|331081201|gb|EGI52362.1| tRNA-dihydrouridine synthase A [Escherichia coli H299]
Length = 345
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|332280828|ref|ZP_08393241.1| tRNA-dihydrouridine synthase A [Shigella sp. D9]
gi|415814116|ref|ZP_11505746.1| tRNA-dihydrouridine synthase A [Escherichia coli LT-68]
gi|417224959|ref|ZP_12028250.1| tRNA dihydrouridine synthase A [Escherichia coli 96.154]
gi|417280697|ref|ZP_12067997.1| tRNA dihydrouridine synthase A [Escherichia coli 3003]
gi|417605017|ref|ZP_12255574.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_94C]
gi|417626327|ref|ZP_12276610.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_H.1.8]
gi|417669676|ref|ZP_12319205.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_O31]
gi|419319630|ref|ZP_13861420.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC12A]
gi|419331777|ref|ZP_13873363.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC12C]
gi|419378314|ref|ZP_13919322.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14B]
gi|422373781|ref|ZP_16454079.1| tRNA dihydrouridine synthase A [Escherichia coli MS 60-1]
gi|422815584|ref|ZP_16863799.1| tRNA-dihydrouridine synthase A [Escherichia coli M919]
gi|432634053|ref|ZP_19869966.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE80]
gi|323171192|gb|EFZ56840.1| tRNA-dihydrouridine synthase A [Escherichia coli LT-68]
gi|324014847|gb|EGB84066.1| tRNA dihydrouridine synthase A [Escherichia coli MS 60-1]
gi|332103180|gb|EGJ06526.1| tRNA-dihydrouridine synthase A [Shigella sp. D9]
gi|345346319|gb|EGW78649.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_94C]
gi|345369877|gb|EGX01857.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_H.1.8]
gi|378163273|gb|EHX24226.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC12A]
gi|378164171|gb|EHX25118.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC12C]
gi|378213172|gb|EHX73490.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC14B]
gi|385541035|gb|EIF87847.1| tRNA-dihydrouridine synthase A [Escherichia coli M919]
gi|386200007|gb|EIH98998.1| tRNA dihydrouridine synthase A [Escherichia coli 96.154]
gi|386245026|gb|EII86756.1| tRNA dihydrouridine synthase A [Escherichia coli 3003]
gi|397782131|gb|EJK92999.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_O31]
gi|431166524|gb|ELE66839.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE80]
Length = 345
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|407004234|gb|EKE20664.1| hypothetical protein ACD_7C00507G0001 [uncultured bacterium]
Length = 313
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 73 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEA 132
C + +I +MV+ G + + L EL K S + + GN+ +++ +
Sbjct: 24 CQELGADITWSEMVSAEGIFRNKEAKNKSL--ELAEKFNSKEKNYWVQIFGNNPQSMAIS 81
Query: 133 AKLAEPHCD--GIDINIGCPQMVAKRGHYGA 161
AK+ + GIDIN+GCP A++ YGA
Sbjct: 82 AKMVQEKIKPLGIDINLGCPVKKAQKAGYGA 112
>gi|424143901|ref|ZP_17875730.1| tRNA-dihydrouridine synthase [Escherichia coli PA14]
gi|390695683|gb|EIN70198.1| tRNA-dihydrouridine synthase [Escherichia coli PA14]
Length = 339
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 62 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 106
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 107 GCPSDRVQNGMFGACLMGNAQLVADCV 133
>gi|213859447|ref|ZP_03385151.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
Length = 284
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|365968567|ref|YP_004950128.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae EcWSU1]
gi|365747480|gb|AEW71707.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae EcWSU1]
Length = 331
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + +
Sbjct: 99 GCPSDRVQNGMFGACLMGNASLVADCI 125
>gi|189239358|ref|XP_974445.2| PREDICTED: similar to tRNA-dihydrouridine synthase [Tribolium
castaneum]
Length = 401
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
+D PL+T+ + + F+G ++ P CDG+D+N GCPQ AK G + +
Sbjct: 77 NDTPLITQFAANKVYD------FVGAAYMVSPFCDGVDLNCGCPQRWAKLQGLGCIMLEK 130
Query: 100 WPLLTELGFKTRS 112
++ +L + R+
Sbjct: 131 PEVIYDLVKQCRN 143
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
F N + AA + P CDG+D+N GCPQ AK G + + ++ +LV
Sbjct: 85 FAANKVYDFVGAAYMVSPFCDGVDLNCGCPQRWAKLQGLGCIMLEKPEVIYDLV 138
>gi|421777222|ref|ZP_16213820.1| tRNA-dihydrouridine synthase A [Escherichia coli AD30]
gi|442598785|ref|ZP_21016534.1| tRNA dihydrouridine synthase A [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|408457717|gb|EKJ81510.1| tRNA-dihydrouridine synthase A [Escherichia coli AD30]
gi|441652543|emb|CCQ02085.1| tRNA dihydrouridine synthase A [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
Length = 339
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 62 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 106
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 107 GCPSDRVQNGMFGACLMGNAQLVADCV 133
>gi|195434933|ref|XP_002065456.1| GK14658 [Drosophila willistoni]
gi|194161541|gb|EDW76442.1| GK14658 [Drosophila willistoni]
Length = 404
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 15/64 (23%)
Query: 97 QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKR 156
QDD PL+ + F D+ +A+L P+ DGID+N GCPQ A
Sbjct: 79 QDDQPLVAQ---------------FAAKDASEFVTSAQLIYPYVDGIDLNCGCPQSWAMA 123
Query: 157 GHYG 160
YG
Sbjct: 124 KGYG 127
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 39 QDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYG 93
QDD PL+ + + +K+ F+ + P+ DGID+N GCPQ A YG
Sbjct: 79 QDDQPLVAQ------FAAKDASEFVTSAQLIYPYVDGIDLNCGCPQSWAMAKGYG 127
>gi|168748106|ref|ZP_02773128.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4113]
gi|168755216|ref|ZP_02780223.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4401]
gi|168766306|ref|ZP_02791313.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4486]
gi|168774404|ref|ZP_02799411.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4196]
gi|168780459|ref|ZP_02805466.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4076]
gi|195935832|ref|ZP_03081214.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4024]
gi|208807897|ref|ZP_03250234.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4206]
gi|208814168|ref|ZP_03255497.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4045]
gi|208821033|ref|ZP_03261353.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4042]
gi|209398005|ref|YP_002273589.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4115]
gi|419089390|ref|ZP_13634734.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4B]
gi|424118684|ref|ZP_17852494.1| tRNA-dihydrouridine synthase [Escherichia coli PA3]
gi|424168129|ref|ZP_17887061.1| tRNA-dihydrouridine synthase [Escherichia coli PA24]
gi|424259338|ref|ZP_17892600.1| tRNA-dihydrouridine synthase [Escherichia coli PA25]
gi|424503340|ref|ZP_17950199.1| tRNA-dihydrouridine synthase [Escherichia coli EC4203]
gi|424509611|ref|ZP_17955952.1| tRNA-dihydrouridine synthase [Escherichia coli EC4196]
gi|424541244|ref|ZP_17984164.1| tRNA-dihydrouridine synthase [Escherichia coli EC4013]
gi|424547395|ref|ZP_17989696.1| tRNA-dihydrouridine synthase [Escherichia coli EC4402]
gi|424553593|ref|ZP_17995394.1| tRNA-dihydrouridine synthase [Escherichia coli EC4439]
gi|424572241|ref|ZP_18012750.1| tRNA-dihydrouridine synthase [Escherichia coli EC4448]
gi|424578400|ref|ZP_18018408.1| tRNA-dihydrouridine synthase [Escherichia coli EC1845]
gi|425141260|ref|ZP_18541617.1| tRNA-dihydrouridine synthase [Escherichia coli 10.0833]
gi|425153050|ref|ZP_18552640.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.0221]
gi|425332693|ref|ZP_18720480.1| tRNA-dihydrouridine synthase [Escherichia coli EC1846]
gi|425338873|ref|ZP_18726186.1| tRNA-dihydrouridine synthase [Escherichia coli EC1847]
gi|425345164|ref|ZP_18732028.1| tRNA-dihydrouridine synthase [Escherichia coli EC1848]
gi|425351002|ref|ZP_18737437.1| tRNA-dihydrouridine synthase [Escherichia coli EC1849]
gi|425357271|ref|ZP_18743309.1| tRNA-dihydrouridine synthase [Escherichia coli EC1850]
gi|425363226|ref|ZP_18748849.1| tRNA-dihydrouridine synthase [Escherichia coli EC1856]
gi|425369490|ref|ZP_18754541.1| tRNA-dihydrouridine synthase [Escherichia coli EC1862]
gi|429075959|ref|ZP_19139194.1| tRNA-dihydrouridine synthase [Escherichia coli 99.0678]
gi|444949988|ref|ZP_21268264.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0839]
gi|444955588|ref|ZP_21273636.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0848]
gi|444993687|ref|ZP_21310312.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA19]
gi|445010034|ref|ZP_21326245.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA47]
gi|445042795|ref|ZP_21358149.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA35]
gi|452968715|ref|ZP_21966942.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4009]
gi|187769933|gb|EDU33777.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4196]
gi|188017450|gb|EDU55572.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4113]
gi|189001854|gb|EDU70840.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4076]
gi|189357455|gb|EDU75874.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4401]
gi|189364132|gb|EDU82551.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4486]
gi|208727698|gb|EDZ77299.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4206]
gi|208735445|gb|EDZ84132.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4045]
gi|208741156|gb|EDZ88838.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4042]
gi|209159405|gb|ACI36838.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4115]
gi|377925314|gb|EHU89254.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC4B]
gi|390673506|gb|EIN49747.1| tRNA-dihydrouridine synthase [Escherichia coli PA3]
gi|390716238|gb|EIN89050.1| tRNA-dihydrouridine synthase [Escherichia coli PA24]
gi|390717483|gb|EIN90268.1| tRNA-dihydrouridine synthase [Escherichia coli PA25]
gi|390821894|gb|EIO88056.1| tRNA-dihydrouridine synthase [Escherichia coli EC4203]
gi|390827023|gb|EIO92814.1| tRNA-dihydrouridine synthase [Escherichia coli EC4196]
gi|390862031|gb|EIP24244.1| tRNA-dihydrouridine synthase [Escherichia coli EC4013]
gi|390865927|gb|EIP27919.1| tRNA-dihydrouridine synthase [Escherichia coli EC4402]
gi|390874494|gb|EIP35613.1| tRNA-dihydrouridine synthase [Escherichia coli EC4439]
gi|390890823|gb|EIP50476.1| tRNA-dihydrouridine synthase [Escherichia coli EC4448]
gi|390914088|gb|EIP72634.1| tRNA-dihydrouridine synthase [Escherichia coli EC1845]
gi|408242514|gb|EKI65094.1| tRNA-dihydrouridine synthase [Escherichia coli EC1846]
gi|408251313|gb|EKI73059.1| tRNA-dihydrouridine synthase [Escherichia coli EC1847]
gi|408255561|gb|EKI76996.1| tRNA-dihydrouridine synthase [Escherichia coli EC1848]
gi|408262137|gb|EKI83087.1| tRNA-dihydrouridine synthase [Escherichia coli EC1849]
gi|408270671|gb|EKI90852.1| tRNA-dihydrouridine synthase [Escherichia coli EC1850]
gi|408273472|gb|EKI93526.1| tRNA-dihydrouridine synthase [Escherichia coli EC1856]
gi|408281759|gb|EKJ01143.1| tRNA-dihydrouridine synthase [Escherichia coli EC1862]
gi|408575226|gb|EKK50910.1| tRNA-dihydrouridine synthase [Escherichia coli 10.0833]
gi|408592775|gb|EKK67131.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
88.0221]
gi|427324246|gb|EKW85725.1| tRNA-dihydrouridine synthase [Escherichia coli 99.0678]
gi|444553974|gb|ELV31563.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0839]
gi|444558675|gb|ELV35946.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
99.0848]
gi|444602347|gb|ELV77089.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA19]
gi|444618090|gb|ELV92189.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA47]
gi|444650477|gb|ELW23305.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
PA35]
Length = 345
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|168760895|ref|ZP_02785902.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4501]
gi|170682797|ref|YP_001746438.1| tRNA-dihydrouridine synthase A [Escherichia coli SMS-3-5]
gi|191167463|ref|ZP_03029277.1| tRNA-dihydrouridine synthase A [Escherichia coli B7A]
gi|209921533|ref|YP_002295617.1| tRNA-dihydrouridine synthase A [Escherichia coli SE11]
gi|217325395|ref|ZP_03441479.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
TW14588]
gi|301019187|ref|ZP_07183385.1| tRNA dihydrouridine synthase A [Escherichia coli MS 196-1]
gi|386698928|ref|YP_006162765.1| tRNA-dihydrouridine synthase A [Escherichia coli KO11FL]
gi|386711998|ref|YP_006175719.1| tRNA-dihydrouridine synthase A [Escherichia coli W]
gi|387509503|ref|YP_006161759.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
RM12579]
gi|407467057|ref|YP_006786501.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407484221|ref|YP_006781371.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2011C-3493]
gi|410484767|ref|YP_006772313.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2009EL-2050]
gi|416308837|ref|ZP_11655290.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str. 1044]
gi|416343439|ref|ZP_11677443.1| tRNA dihydrouridine synthase A [Escherichia coli EC4100B]
gi|416813155|ref|ZP_11891054.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
3256-97]
gi|416823667|ref|ZP_11895656.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str. USDA
5905]
gi|417149502|ref|ZP_11989593.1| tRNA dihydrouridine synthase A [Escherichia coli 1.2264]
gi|417157170|ref|ZP_11994794.1| tRNA dihydrouridine synthase A [Escherichia coli 96.0497]
gi|417167417|ref|ZP_12000303.1| tRNA dihydrouridine synthase A [Escherichia coli 99.0741]
gi|417173676|ref|ZP_12003472.1| tRNA dihydrouridine synthase A [Escherichia coli 3.2608]
gi|417279832|ref|ZP_12067137.1| tRNA dihydrouridine synthase A [Escherichia coli 3.2303]
gi|417293632|ref|ZP_12080911.1| tRNA dihydrouridine synthase A [Escherichia coli B41]
gi|417584457|ref|ZP_12235241.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_C165-02]
gi|417620745|ref|ZP_12271141.1| tRNA-dihydrouridine synthase A [Escherichia coli G58-1]
gi|417637011|ref|ZP_12287212.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_S1191]
gi|417807749|ref|ZP_12454675.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
LB226692]
gi|417835490|ref|ZP_12481929.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
01-09591]
gi|417867571|ref|ZP_12512607.1| hypothetical protein C22711_4498 [Escherichia coli O104:H4 str.
C227-11]
gi|417944826|ref|ZP_12588065.1| tRNA-dihydrouridine synthase A [Escherichia coli XH140A]
gi|417977734|ref|ZP_12618514.1| tRNA-dihydrouridine synthase A [Escherichia coli XH001]
gi|418270660|ref|ZP_12888421.1| tRNA-dihydrouridine synthase A [Shigella sonnei str. Moseley]
gi|418305679|ref|ZP_12917473.1| tRNA-dihydrouridine synthase A [Escherichia coli UMNF18]
gi|418943089|ref|ZP_13496313.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H43 str. T22]
gi|419048150|ref|ZP_13595076.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3A]
gi|419059981|ref|ZP_13606775.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3C]
gi|419123414|ref|ZP_13668349.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5B]
gi|419139483|ref|ZP_13684267.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC5E]
gi|419145169|ref|ZP_13689890.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6A]
gi|419161932|ref|ZP_13706418.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6D]
gi|419167022|ref|ZP_13711464.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC6E]
gi|419173038|ref|ZP_13716904.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC7A]
gi|419183613|ref|ZP_13727193.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7C]
gi|419189212|ref|ZP_13732709.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7D]
gi|419347900|ref|ZP_13889260.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13A]
gi|419394384|ref|ZP_13935175.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15A]
gi|419919489|ref|ZP_14437641.1| tRNA-dihydrouridine synthase A [Escherichia coli KD2]
gi|419925921|ref|ZP_14443740.1| tRNA-dihydrouridine synthase A [Escherichia coli 541-15]
gi|419929982|ref|ZP_14447646.1| tRNA-dihydrouridine synthase A [Escherichia coli 541-1]
gi|419935807|ref|ZP_14452875.1| tRNA-dihydrouridine synthase A [Escherichia coli 576-1]
gi|419938219|ref|ZP_14455059.1| tRNA-dihydrouridine synthase A [Escherichia coli 75]
gi|419950991|ref|ZP_14467191.1| tRNA-dihydrouridine synthase A [Escherichia coli CUMT8]
gi|422761367|ref|ZP_16815125.1| tRNA dihydrouridine synthase A [Escherichia coli E1167]
gi|422772606|ref|ZP_16826293.1| tRNA dihydrouridine synthase A [Escherichia coli E482]
gi|424458775|ref|ZP_17909846.1| tRNA-dihydrouridine synthase [Escherichia coli PA33]
gi|424478022|ref|ZP_17927315.1| tRNA-dihydrouridine synthase [Escherichia coli PA42]
gi|425189406|ref|ZP_18586655.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1997]
gi|425431515|ref|ZP_18812101.1| tRNA-dihydrouridine synthase [Escherichia coli 0.1304]
gi|428962046|ref|ZP_19033301.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
89.0511]
gi|428980803|ref|ZP_19050585.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.2281]
gi|428992705|ref|ZP_19061671.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
93.0056]
gi|429023447|ref|ZP_19089939.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0428]
gi|429047475|ref|ZP_19112165.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0107]
gi|429829329|ref|ZP_19360300.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0109]
gi|170520515|gb|ACB18693.1| tRNA-dihydrouridine synthase A [Escherichia coli SMS-3-5]
gi|189368570|gb|EDU86986.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
EC4501]
gi|190902505|gb|EDV62240.1| tRNA-dihydrouridine synthase A [Escherichia coli B7A]
gi|209914792|dbj|BAG79866.1| conserved hypothetical protein [Escherichia coli SE11]
gi|217321616|gb|EEC30040.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H7 str.
TW14588]
gi|299882344|gb|EFI90555.1| tRNA dihydrouridine synthase A [Escherichia coli MS 196-1]
gi|320200820|gb|EFW75406.1| tRNA dihydrouridine synthase A [Escherichia coli EC4100B]
gi|320654888|gb|EFX22849.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320660736|gb|EFX28193.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str. USDA
5905]
gi|323940232|gb|EGB36425.1| tRNA dihydrouridine synthase A [Escherichia coli E482]
gi|324118621|gb|EGC12513.1| tRNA dihydrouridine synthase A [Escherichia coli E1167]
gi|326346520|gb|EGD70254.1| tRNA dihydrouridine synthase A [Escherichia coli O157:H7 str. 1044]
gi|339417777|gb|AEJ59449.1| tRNA-dihydrouridine synthase A [Escherichia coli UMNF18]
gi|340732070|gb|EGR61209.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
01-09591]
gi|340737645|gb|EGR71900.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
LB226692]
gi|341920860|gb|EGT70465.1| hypothetical protein C22711_4498 [Escherichia coli O104:H4 str.
C227-11]
gi|342363423|gb|EGU27531.1| tRNA-dihydrouridine synthase A [Escherichia coli XH140A]
gi|344192596|gb|EGV46686.1| tRNA-dihydrouridine synthase A [Escherichia coli XH001]
gi|345342640|gb|EGW75032.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_C165-02]
gi|345368410|gb|EGX00408.1| tRNA-dihydrouridine synthase A [Escherichia coli G58-1]
gi|345384293|gb|EGX14160.1| tRNA-dihydrouridine synthase A [Escherichia coli STEC_S1191]
gi|374361497|gb|AEZ43204.1| tRNA-dihydrouridine synthase A [Escherichia coli O55:H7 str.
RM12579]
gi|375321596|gb|EHS67417.1| tRNA-dihydrouridine synthase A [Escherichia coli O157:H43 str. T22]
gi|377887894|gb|EHU52368.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3A]
gi|377901048|gb|EHU65371.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC3C]
gi|377960668|gb|EHV24147.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC5B]
gi|377978281|gb|EHV41560.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC5E]
gi|377988030|gb|EHV51211.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6A]
gi|378003044|gb|EHV66090.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC6D]
gi|378005322|gb|EHV68326.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC6E]
gi|378008943|gb|EHV71901.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
DEC7A]
gi|378020383|gb|EHV83129.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7C]
gi|378022948|gb|EHV85629.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC7D]
gi|378181512|gb|EHX42182.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC13A]
gi|378232283|gb|EHX92384.1| tRNA-dihydrouridine synthase A [Escherichia coli DEC15A]
gi|383390455|gb|AFH15413.1| tRNA-dihydrouridine synthase A [Escherichia coli KO11FL]
gi|383407690|gb|AFH13933.1| tRNA-dihydrouridine synthase A [Escherichia coli W]
gi|386161723|gb|EIH23526.1| tRNA dihydrouridine synthase A [Escherichia coli 1.2264]
gi|386165920|gb|EIH32440.1| tRNA dihydrouridine synthase A [Escherichia coli 96.0497]
gi|386171539|gb|EIH43583.1| tRNA dihydrouridine synthase A [Escherichia coli 99.0741]
gi|386176368|gb|EIH53847.1| tRNA dihydrouridine synthase A [Escherichia coli 3.2608]
gi|386237548|gb|EII74493.1| tRNA dihydrouridine synthase A [Escherichia coli 3.2303]
gi|386251820|gb|EIJ01512.1| tRNA dihydrouridine synthase A [Escherichia coli B41]
gi|388385029|gb|EIL46734.1| tRNA-dihydrouridine synthase A [Escherichia coli 541-15]
gi|388387683|gb|EIL49293.1| tRNA-dihydrouridine synthase A [Escherichia coli KD2]
gi|388402536|gb|EIL63108.1| tRNA-dihydrouridine synthase A [Escherichia coli 541-1]
gi|388403648|gb|EIL64152.1| tRNA-dihydrouridine synthase A [Escherichia coli 576-1]
gi|388410787|gb|EIL70990.1| tRNA-dihydrouridine synthase A [Escherichia coli 75]
gi|388415638|gb|EIL75560.1| tRNA-dihydrouridine synthase A [Escherichia coli CUMT8]
gi|390740474|gb|EIO11601.1| tRNA-dihydrouridine synthase [Escherichia coli PA33]
gi|390764183|gb|EIO33397.1| tRNA-dihydrouridine synthase [Escherichia coli PA42]
gi|397894258|gb|EJL10705.1| tRNA-dihydrouridine synthase A [Shigella sonnei str. Moseley]
gi|406779929|gb|AFS59353.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407056518|gb|AFS76569.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2011C-3493]
gi|407063092|gb|AFS84139.1| tRNA-dihydrouridine synthase A [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408100365|gb|EKH32871.1| tRNA-dihydrouridine synthase [Escherichia coli FRIK1997]
gi|408341112|gb|EKJ55583.1| tRNA-dihydrouridine synthase [Escherichia coli 0.1304]
gi|427200589|gb|EKV71002.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
89.0511]
gi|427220916|gb|EKV89803.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
90.2281]
gi|427237122|gb|EKW04666.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
93.0056]
gi|427272745|gb|EKW37470.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0428]
gi|427295400|gb|EKW58508.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0107]
gi|429250232|gb|EKY34897.1| tRNA dihydrouridine synthase A family protein [Escherichia coli
96.0109]
Length = 339
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 62 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 106
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 107 GCPSDRVQNGMFGACLMGNAQLVADCV 133
>gi|456877498|gb|EMF92516.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. ST188]
Length = 350
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
R + +Y ++ PL +LG G+D K L+E++K+ E + I++N+
Sbjct: 61 RHRFLSYNPEELPLAIQLG---------------GDDPKALSESSKIGEDYGYSEINLNV 105
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G++GA L + + LV++
Sbjct: 106 GCPSDRVREGNFGACLMKNPERVAELVFA 134
>gi|358335170|dbj|GAA28153.2| tRNA-dihydrouridine synthase 4-like [Clonorchis sinensis]
Length = 380
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ D L+ A ++ P+C+GID+N GCPQ A G+ L L+ LV +
Sbjct: 73 VQLASKDPCELSVATEMLAPYCEGIDLNCGCPQKWAMESSLGSALLRKPELIAALVRAAR 132
Query: 179 MV 180
+
Sbjct: 133 TI 134
>gi|293417553|ref|ZP_06660175.1| tRNA-dihydrouridine synthase A [Escherichia coli B185]
gi|291430271|gb|EFF03269.1| tRNA-dihydrouridine synthase A [Escherichia coli B185]
Length = 345
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEERGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|123444030|ref|YP_001008000.1| tRNA-dihydrouridine synthase A [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122090991|emb|CAL13874.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 342
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 23/126 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+ Y AY + D P+ +LG G+D + L AKLAE + I++N+
Sbjct: 62 KADYLAYSEQDHPVALQLG---------------GSDPQALAHCAKLAELRGYNEINLNV 106
Query: 148 GCPQMVAKRGHYGAYLQDDWPL-------LTNLVYSPNMVHFVIAEPHCDGNDINIGCPQ 200
GCP + G +GA L + L + ++V P V I D + Q
Sbjct: 107 GCPSDRVQNGRFGACLMAEASLVADCIKAMRDVVSIPVTVKTRIGIDELDSYEFLCEFVQ 166
Query: 201 MVAKRG 206
VA+RG
Sbjct: 167 TVAERG 172
>gi|424801273|ref|ZP_18226815.1| tRNA dihydrouridine synthase A [Cronobacter sakazakii 696]
gi|423236994|emb|CCK08685.1| tRNA dihydrouridine synthase A [Cronobacter sakazakii 696]
Length = 205
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAHCAKLAEERGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + +
Sbjct: 99 GCPSDRVQNGRFGACLMGEAQLVADCI 125
>gi|402584035|gb|EJW77977.1| DUS4L protein [Wuchereria bancrofti]
Length = 275
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F N+ + + AA +C GID+N GCPQ + YG+ L D + ++V
Sbjct: 43 VQFASNEPEEFSTAAMFISRYCRGIDLNCGCPQRDVMKEGYGSSLLTDPVRIADIV 98
>gi|319936962|ref|ZP_08011372.1| transcriptional regulator [Coprobacillus sp. 29_1]
gi|319807898|gb|EFW04477.1| transcriptional regulator [Coprobacillus sp. 29_1]
Length = 335
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 118 SLMFCGNDSKNLTEAAKLAE--PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
S+ G D +++ AAK + +CD IDIN+GCP + H G+YL L+ ++V
Sbjct: 68 SIQVFGGDVESMVTAAKFVDENSNCDIIDINMGCPVNKVLKAHAGSYLLQFPDLVYDIVK 127
Query: 176 S 176
S
Sbjct: 128 S 128
>gi|62182692|ref|YP_219109.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|168821313|ref|ZP_02833313.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|224586008|ref|YP_002639807.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|375117045|ref|ZP_09762215.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
gi|409247917|ref|YP_006888609.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|62130325|gb|AAX68028.1| putative TIM-barrel enzymes, possibly dehydrogenases, nifR3 family
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|205342153|gb|EDZ28917.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|224470536|gb|ACN48366.1| hypothetical protein SPC_4304 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|320088651|emb|CBY98409.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|322717191|gb|EFZ08762.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SCSA50]
Length = 332
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|308159955|gb|EFO62469.1| tRNA dihydrouridine synthase, putative [Giardia lamblia P15]
Length = 471
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 16 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
D +++N+GCPQ VA RG YG+YL + L E++
Sbjct: 119 DIVELNMGCPQAVALRGKYGSYLMEHLELAEEIL 152
Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 74 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
D +++N+GCPQ VA RG YG+YL + L E+
Sbjct: 119 DIVELNMGCPQAVALRGKYGSYLMEHLELAEEI 151
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 141 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
D +++N+GCPQ VA RG YG+YL + L ++++
Sbjct: 119 DIVELNMGCPQAVALRGKYGSYLMEHLELAEEILHT 154
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 190 DGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
D ++N+GCPQ VA RG YG+YL + L E+
Sbjct: 119 DIVELNMGCPQAVALRGKYGSYLMEHLELAEEI 151
>gi|168231239|ref|ZP_02656297.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|194470364|ref|ZP_03076348.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194456728|gb|EDX45567.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|205334267|gb|EDZ21031.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
Length = 332
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|121602008|ref|YP_989139.1| tRNA-dihydrouridine synthase A [Bartonella bacilliformis KC583]
gi|421760951|ref|ZP_16197758.1| tRNA-dihydrouridine synthase A [Bartonella bacilliformis INS]
gi|120614185|gb|ABM44786.1| tRNA-dihydrouridine synthase A [Bartonella bacilliformis KC583]
gi|411173784|gb|EKS43825.1| tRNA-dihydrouridine synthase A [Bartonella bacilliformis INS]
Length = 326
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 164
L F + H +L G+D K L EAA++AE D I++N+GCP + G +GA L
Sbjct: 57 LAFNDQEHPV--ALQIGGSDPKKLAEAAQIAEDFGYDEINLNVGCPSNRVQSGTFGACLM 114
Query: 165 DDWPLLTNLVYSPNMVHFVIAEPHC 189
+ ++ N V + V + C
Sbjct: 115 LNPDIVANAVEAMKRVVTIPVTVKC 139
>gi|336248184|ref|YP_004591894.1| tRNA-dihydrouridine synthase A [Enterobacter aerogenes KCTC 2190]
gi|334734240|gb|AEG96615.1| tRNA-dihydrouridine synthase A [Enterobacter aerogenes KCTC 2190]
Length = 332
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + +
Sbjct: 100 GCPSDRVQNGMFGACLMGNAALVADCI 126
>gi|410450803|ref|ZP_11304833.1| tRNA dihydrouridine synthase A [Leptospira sp. Fiocruz LV3954]
gi|410015346|gb|EKO77448.1| tRNA dihydrouridine synthase A [Leptospira sp. Fiocruz LV3954]
Length = 344
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
R + +Y ++ PL +LG G+D K L+E++K+ E + I++N+
Sbjct: 55 RHRFLSYNPEELPLAIQLG---------------GDDPKALSESSKIGEDYGYSEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G++GA L + + LV++
Sbjct: 100 GCPSDRVREGNFGACLMKNPERVAELVFA 128
>gi|336312633|ref|ZP_08567580.1| tRNA dihydrouridine synthase A [Shewanella sp. HN-41]
gi|335863806|gb|EGM68931.1| tRNA dihydrouridine synthase A [Shewanella sp. HN-41]
Length = 339
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINI 147
RG Y AY Q++ PL +LG G++ L AKLA E D +++N+
Sbjct: 61 RGDYLAYNQEEHPLALQLG---------------GSNPSELARCAKLAAERGYDEVNLNV 105
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ V
Sbjct: 106 GCPSDRVQNGRFGACLMAEPELVAECV 132
>gi|257460864|ref|ZP_05625965.1| tRNA-dihydrouridine synthase B [Campylobacter gracilis RM3268]
gi|257442195|gb|EEV17337.1| tRNA-dihydrouridine synthase B [Campylobacter gracilis RM3268]
Length = 308
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 57 KNGPLFMGPLF-IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMC 115
K PLF+ PL ++P G+ GC V++ A + + L L + +
Sbjct: 7 KKDPLFLAPLAGFSDPPLRGVVKKFGCDATVSEMISANALVFEGEKTLKML--EKNAAET 64
Query: 116 GHSLMFCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTN 172
+ G+D++ + +A L DGID+N GCP V K+G G+ L D P L+
Sbjct: 65 PFFVQIAGSDAEIIKKAVLLINKFDGIDGIDLNCGCPVPKVVKQGA-GSALLLDLPRLSR 123
Query: 173 LV 174
LV
Sbjct: 124 LV 125
>gi|449146249|ref|ZP_21777038.1| NifR3/Smm1 family protein [Vibrio mimicus CAIM 602]
gi|449078095|gb|EMB49040.1| NifR3/Smm1 family protein [Vibrio mimicus CAIM 602]
Length = 327
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
RG + AY Q++ P+ +L F G++ K+L AKLA+ D I++N+
Sbjct: 47 RGDFLAYNQEEHPV---------------ALQFGGSNPKDLAHCAKLAQERGYDEINLNV 91
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
GCP + G +GA L + L+ + + V
Sbjct: 92 GCPSDRVQNGRFGACLMAEPDLVAECIAAMRSV 124
>gi|307564816|ref|ZP_07627344.1| TIM-barrel protein, nifR3 family [Prevotella amnii CRIS 21A-A]
gi|307346538|gb|EFN91847.1| TIM-barrel protein, nifR3 family [Prevotella amnii CRIS 21A-A]
Length = 325
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 123 GNDSKNLTEAAKLAE-PHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLV 174
GN+ +++ EAAK+ E D IDIN GCP + VA +G GA L + PLL N+V
Sbjct: 74 GNNVESMVEAAKIVEEAKPDVIDINFGCPVKKVAGKGA-GAGLLRNIPLLLNIV 126
>gi|438047594|ref|ZP_20856075.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|435319672|gb|ELO92477.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
Length = 304
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|373950890|ref|ZP_09610851.1| TIM-barrel protein, yjbN family [Shewanella baltica OS183]
gi|386323276|ref|YP_006019393.1| yjbN family TIM-barrel protein [Shewanella baltica BA175]
gi|333817421|gb|AEG10087.1| TIM-barrel protein, yjbN family [Shewanella baltica BA175]
gi|373887490|gb|EHQ16382.1| TIM-barrel protein, yjbN family [Shewanella baltica OS183]
Length = 339
Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 59/148 (39%), Gaps = 33/148 (22%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINI 147
RG Y AY Q++ PL +LG G++ +L AKLA E D +++N+
Sbjct: 61 RGDYLAYNQEEHPLALQLG---------------GSNPVDLARCAKLAAERGYDEVNLNV 105
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGH 207
GCP + G +GA L + L+ V + V I P V R
Sbjct: 106 GCPSDRVQNGRFGACLMAEPELVAECVDAMKQV---------------IDIPVTVKTR-- 148
Query: 208 YGAYLQDDWPLLTELGKMAMLVGILDNT 235
G QD + LT+ + G D T
Sbjct: 149 IGIDEQDSYAFLTQFIDVVSAKGCTDFT 176
>gi|329296553|ref|ZP_08253889.1| TIM-barrel protein, yjbN family [Plautia stali symbiont]
Length = 331
Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY + + PL +LG G+D L AKLAE D I++N+
Sbjct: 50 KGDYLAYSEAEHPLALQLG---------------GSDPAALATCAKLAEARGYDEINLNV 94
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G +GA L + L+ + + +
Sbjct: 95 GCPSDRVQNGRFGACLMGEAALVADCIKA 123
>gi|418866047|ref|ZP_13420511.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
gi|392840561|gb|EJA96096.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 4176]
Length = 332
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|417439152|ref|ZP_12161938.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
gi|353612375|gb|EHC64763.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Mississippi str. A4-633]
Length = 332
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|417387391|ref|ZP_12151838.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Johannesburg str. S5-703]
gi|353600498|gb|EHC56371.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Johannesburg str. S5-703]
Length = 332
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|238913008|ref|ZP_04656845.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
Length = 332
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|218510078|ref|ZP_03507956.1| tRNA-dihydrouridine synthase A [Rhizobium etli Brasil 5]
Length = 301
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 111 RSHMCGH-------SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAY 162
R + GH +L G+D L EA ++AEP+ D I++N+GCP + G +GA
Sbjct: 37 RERLLGHDAAEHPLALQLGGSDPAKLAEAVRIAEPYGYDEINLNVGCPSDRVQSGTFGAC 96
Query: 163 L 163
L
Sbjct: 97 L 97
>gi|200388599|ref|ZP_03215211.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|199605697|gb|EDZ04242.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
Length = 332
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|163749318|ref|ZP_02156567.1| TIM-barrel protein, yjbN family [Shewanella benthica KT99]
gi|161331037|gb|EDQ01963.1| TIM-barrel protein, yjbN family [Shewanella benthica KT99]
Length = 310
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 57/143 (39%), Gaps = 33/143 (23%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINI 147
+G Y AY ++ PL +LG G++ ++L AKLA E D I++N+
Sbjct: 36 KGDYLAYNSEENPLALQLG---------------GSNPQDLATCAKLAAERGYDEINLNV 80
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGH 207
GCP + G +GA L D L+ V + V + P V R
Sbjct: 81 GCPSDRVQSGRFGACLMADPKLVAECVTAMKQV---------------VDIPVTVKTR-- 123
Query: 208 YGAYLQDDWPLLTELGKMAMLVG 230
G QD + LTE VG
Sbjct: 124 IGIDDQDSYEFLTEFVDTVSDVG 146
>gi|168466925|ref|ZP_02700773.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|418762767|ref|ZP_13318893.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|418767734|ref|ZP_13323798.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|418771003|ref|ZP_13327020.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|418777295|ref|ZP_13333226.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|418782425|ref|ZP_13338289.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|418785444|ref|ZP_13341277.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|418804306|ref|ZP_13359913.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
gi|419786385|ref|ZP_14312113.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|419795235|ref|ZP_14320838.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|195630652|gb|EDX49264.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|392613183|gb|EIW95644.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. Levine 15]
gi|392621731|gb|EIX04080.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. Levine 1]
gi|392735026|gb|EIZ92207.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35199]
gi|392735384|gb|EIZ92557.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21539]
gi|392735496|gb|EIZ92668.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35185]
gi|392744112|gb|EJA01169.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35188]
gi|392744288|gb|EJA01344.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 33953]
gi|392752541|gb|EJA09482.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21559]
gi|392770825|gb|EJA27547.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 35202]
Length = 332
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|410697828|gb|AFV76896.1| tRNA-dihydrouridine synthase [Thermus oshimai JL-2]
Length = 342
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 164
L F+ H +L G+D + L EAA++ E + D I++N+GCP A+ +GA L
Sbjct: 51 LFFRKEEHPI--ALQLAGSDPRTLAEAAQVGEAYGYDEINLNLGCPSEKAQEAGFGACLL 108
Query: 165 DD 166
D
Sbjct: 109 SD 110
>gi|417543207|ref|ZP_12194442.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
gi|353657123|gb|EHC97661.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Wandsworth str. A4-580]
Length = 332
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|332163190|ref|YP_004299767.1| tRNA-dihydrouridine synthase A [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386310201|ref|YP_006006257.1| tRNA dihydrouridine synthase A [Yersinia enterocolitica subsp.
palearctica Y11]
gi|418243182|ref|ZP_12869673.1| tRNA-dihydrouridine synthase A [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|433550712|ref|ZP_20506755.1| tRNA dihydrouridine synthase A [Yersinia enterocolitica IP 10393]
gi|318603925|emb|CBY25423.1| tRNA dihydrouridine synthase A [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325667420|gb|ADZ44064.1| tRNA-dihydrouridine synthase A [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330861940|emb|CBX72109.1| tRNA-dihydrouridine synthase A [Yersinia enterocolitica W22703]
gi|351777380|gb|EHB19598.1| tRNA-dihydrouridine synthase A [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|431787811|emb|CCO69795.1| tRNA dihydrouridine synthase A [Yersinia enterocolitica IP 10393]
Length = 348
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 23/126 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+ Y AY + D P+ +LG G+D + L AKLAE + I++N+
Sbjct: 68 KADYLAYSEQDHPVALQLG---------------GSDPQALAHCAKLAELRGYNEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPL-------LTNLVYSPNMVHFVIAEPHCDGNDINIGCPQ 200
GCP + G +GA L + L + ++V P V I D + Q
Sbjct: 113 GCPSDRVQNGRFGACLMAEASLVADCIKAMRDVVSIPVTVKTRIGIDELDSYEFLCEFVQ 172
Query: 201 MVAKRG 206
VA+RG
Sbjct: 173 TVAERG 178
>gi|225717964|gb|ACO14828.1| tRNA-dihydrouridine synthase 4-like [Caligus clemensi]
Length = 192
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+ F + AA+L PH +G+D++ GCPQ A R GA L ++++V S
Sbjct: 73 VQFASKSVDDFVSAAQLVAPHAEGVDLDCGCPQGWAIREGIGAALLQRPEFISDVVRS 130
>gi|194446261|ref|YP_002043494.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|418807868|ref|ZP_13363425.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|418811602|ref|ZP_13367127.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|418816205|ref|ZP_13371698.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|418822438|ref|ZP_13377851.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|418828487|ref|ZP_13383521.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|418832566|ref|ZP_13387503.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|418833855|ref|ZP_13388766.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|418841232|ref|ZP_13396051.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|418848468|ref|ZP_13403206.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|418854520|ref|ZP_13409188.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
gi|194404924|gb|ACF65146.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|392777697|gb|EJA34379.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22513]
gi|392778169|gb|EJA34849.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21550]
gi|392788113|gb|EJA44651.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22425]
gi|392790426|gb|EJA46924.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21538]
gi|392790521|gb|EJA47016.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 22462]
gi|392797196|gb|EJA53514.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM N18486]
gi|392805763|gb|EJA61878.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM N1543]
gi|392808561|gb|EJA64609.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 21554]
gi|392822768|gb|EJA78572.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 37978]
gi|392824375|gb|EJA80161.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19593]
Length = 332
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|204927346|ref|ZP_03218548.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|452122023|ref|YP_007472271.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
gi|204324011|gb|EDZ09206.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|451911027|gb|AGF82833.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Javiana str. CFSAN001992]
Length = 332
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|389839414|ref|YP_006341498.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii ES15]
gi|387849890|gb|AFJ97987.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii ES15]
Length = 331
Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAHCAKLAEARGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + +
Sbjct: 99 GCPSDRVQNGRFGACLMGEAQLVADCI 125
>gi|205355015|ref|YP_002228816.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|375125917|ref|ZP_09771081.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|445131990|ref|ZP_21381991.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
gi|205274796|emb|CAR39855.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|326630167|gb|EGE36510.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. SG9]
gi|444849429|gb|ELX74540.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9184]
Length = 332
Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|168263436|ref|ZP_02685409.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|417369857|ref|ZP_12140887.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
gi|205348025|gb|EDZ34656.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|353583306|gb|EHC43699.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Hvittingfoss str. A4-620]
Length = 332
Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|152972912|ref|YP_001338058.1| tRNA-dihydrouridine synthase A [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|150957761|gb|ABR79791.1| conserved protein, FMN-linked [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 313
Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D + L + AKLAE D I++N+
Sbjct: 36 KGDYLAYSEEEHPVALQLG---------------GSDPQALAQCAKLAEARGYDEINLNV 80
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G +GA L + L+ + + +
Sbjct: 81 GCPSDRVQNGMFGACLMGNALLVADCIKA 109
>gi|375004122|ref|ZP_09728457.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
gi|353073460|gb|EHB39225.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Infantis str. SARB27]
Length = 332
Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|190891640|ref|YP_001978182.1| tRNA-dihydrouridine synthase [Rhizobium etli CIAT 652]
gi|190696919|gb|ACE91004.1| tRNA-dihydrouridine synthase protein [Rhizobium etli CIAT 652]
Length = 339
Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 98 DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKR 156
+ W L GF+ H + G ++ + EAA++A H D IDIN+GCP
Sbjct: 70 ESWSRLKAAGFRP------HMVQLAGREAHWMAEAARIAADHGADIIDINMGCPAKKVIG 123
Query: 157 GHYGAYLQDD 166
G+ G+ L D
Sbjct: 124 GYSGSALMRD 133
>gi|16762924|ref|NP_458541.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29144411|ref|NP_807753.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|213051927|ref|ZP_03344805.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213424511|ref|ZP_03357308.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213582871|ref|ZP_03364697.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213614451|ref|ZP_03371277.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213647516|ref|ZP_03377569.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|289824651|ref|ZP_06544178.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|378962333|ref|YP_005219819.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
gi|38604946|sp|Q8Z1T1.1|DUSA_SALTI RecName: Full=tRNA-dihydrouridine synthase A
gi|25329941|pir||AB1016 conserved hypothetical protein STY4439 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16505231|emb|CAD09227.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29140049|gb|AAO71613.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|374356205|gb|AEZ47966.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
Length = 332
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|168243640|ref|ZP_02668572.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|194448858|ref|YP_002048234.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|386589569|ref|YP_006085969.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|417354256|ref|ZP_12130739.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|417362043|ref|ZP_12135791.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|417491911|ref|ZP_12173108.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Rubislaw str. A4-653]
gi|417535457|ref|ZP_12188924.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|418514870|ref|ZP_13081064.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|419731159|ref|ZP_14258083.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|419736639|ref|ZP_14263468.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|419737299|ref|ZP_14264111.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|419742757|ref|ZP_14269428.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|419748402|ref|ZP_14274899.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|421572491|ref|ZP_16018140.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|421574344|ref|ZP_16019967.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|421580873|ref|ZP_16026426.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|421582440|ref|ZP_16027977.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
gi|194407162|gb|ACF67381.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|205337347|gb|EDZ24111.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|353562279|gb|EHC28970.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Gaminara str. A4-567]
gi|353582408|gb|EHC43063.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Give str. S5-487]
gi|353630230|gb|EHC77842.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Rubislaw str. A4-653]
gi|353656757|gb|EHC97411.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Urbana str. R8-2977]
gi|366077677|gb|EHN41687.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Pomona str. ATCC 10729]
gi|381290979|gb|EIC32234.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41563]
gi|381292289|gb|EIC33493.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41579]
gi|381306014|gb|EIC46912.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41573]
gi|381313400|gb|EIC54185.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41566]
gi|381314392|gb|EIC55162.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. 41565]
gi|383796613|gb|AFH43695.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. B182]
gi|402517037|gb|EJW24442.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00322]
gi|402518914|gb|EJW26281.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00326]
gi|402525196|gb|EJW32488.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00325]
gi|402533108|gb|EJW40292.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Heidelberg str. CFSAN00328]
Length = 332
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|190892270|ref|YP_001978812.1| tRNA-dihydrouridine synthase A [Rhizobium etli CIAT 652]
gi|190697549|gb|ACE91634.1| putative tRNA-dihydrouridine synthase protein [Rhizobium etli CIAT
652]
Length = 321
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 111 RSHMCGH-------SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAY 162
R + GH +L G+D L EA ++AEP+ D I++N+GCP + G +GA
Sbjct: 37 RERLLGHDAAEHPLALQLGGSDPAKLAEAVRIAEPYGYDEINLNVGCPSDRVQSGTFGAC 96
Query: 163 L 163
L
Sbjct: 97 L 97
>gi|198244614|ref|YP_002218138.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|207859397|ref|YP_002246048.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|375121668|ref|ZP_09766835.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|378957799|ref|YP_005215286.1| hypothetical protein SPUL_4233 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|418847343|ref|ZP_13402104.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|418859768|ref|ZP_13414359.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|418864917|ref|ZP_13419433.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|421359864|ref|ZP_15810151.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|421362308|ref|ZP_15812563.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|421366288|ref|ZP_15816492.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|421373220|ref|ZP_15823361.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|421377635|ref|ZP_15827730.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|421380350|ref|ZP_15830413.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|421385699|ref|ZP_15835720.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|421389299|ref|ZP_15839283.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|421393839|ref|ZP_15843782.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|421400104|ref|ZP_15849995.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|421402594|ref|ZP_15852451.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|421407490|ref|ZP_15857298.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|421412363|ref|ZP_15862118.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|421416418|ref|ZP_15866138.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|421420567|ref|ZP_15870244.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|421427100|ref|ZP_15876724.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|421428966|ref|ZP_15878567.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|421436344|ref|ZP_15885876.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|421440629|ref|ZP_15890105.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|421445435|ref|ZP_15894861.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|421447540|ref|ZP_15896939.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|421886671|ref|ZP_16317845.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|436624284|ref|ZP_20514958.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|436698052|ref|ZP_20518275.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|436795787|ref|ZP_20522518.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|436807028|ref|ZP_20527142.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|436813042|ref|ZP_20531327.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|436846750|ref|ZP_20539520.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|436850714|ref|ZP_20541382.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|436859829|ref|ZP_20547715.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|436866727|ref|ZP_20552156.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|436871151|ref|ZP_20554549.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|436880927|ref|ZP_20560526.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|436889814|ref|ZP_20565480.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|436898136|ref|ZP_20570147.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|436903862|ref|ZP_20574131.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|436913077|ref|ZP_20578644.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|436917495|ref|ZP_20581003.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|436925178|ref|ZP_20585652.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|436937528|ref|ZP_20592655.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|436944730|ref|ZP_20597140.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|436947067|ref|ZP_20598224.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|436959007|ref|ZP_20603458.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|436973524|ref|ZP_20610787.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|436987555|ref|ZP_20616101.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|436994953|ref|ZP_20619117.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|437006458|ref|ZP_20622695.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|437017141|ref|ZP_20626198.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|437027814|ref|ZP_20630521.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|437041703|ref|ZP_20635663.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|437047723|ref|ZP_20639070.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|437056212|ref|ZP_20643747.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|437069008|ref|ZP_20651022.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|437077966|ref|ZP_20655824.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|437083808|ref|ZP_20659375.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|437089230|ref|ZP_20662026.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|437106080|ref|ZP_20667220.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|437120160|ref|ZP_20671298.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|437129117|ref|ZP_20675743.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|437137020|ref|ZP_20680088.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|437144740|ref|ZP_20685211.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|437151618|ref|ZP_20689425.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|437163836|ref|ZP_20696814.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|437167610|ref|ZP_20698881.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|437174616|ref|ZP_20702261.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|437187466|ref|ZP_20710006.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|437235734|ref|ZP_20713864.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|437258921|ref|ZP_20716821.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|437271113|ref|ZP_20723474.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|437274146|ref|ZP_20725147.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|437284399|ref|ZP_20729570.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|437307422|ref|ZP_20734815.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|437333401|ref|ZP_20742337.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|437337522|ref|ZP_20743277.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|437360475|ref|ZP_20748283.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|437412006|ref|ZP_20753179.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|437439735|ref|ZP_20757354.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|437460086|ref|ZP_20761295.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|437475694|ref|ZP_20766867.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|437493315|ref|ZP_20772089.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|437515892|ref|ZP_20777999.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|437536148|ref|ZP_20781659.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|437558984|ref|ZP_20785400.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|437574563|ref|ZP_20789835.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|437591341|ref|ZP_20794769.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|437610848|ref|ZP_20801159.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|437615406|ref|ZP_20802212.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|437642835|ref|ZP_20808283.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|437663317|ref|ZP_20813928.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|437685253|ref|ZP_20819019.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|437697203|ref|ZP_20822766.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|437713357|ref|ZP_20827338.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|437736658|ref|ZP_20832849.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|437748959|ref|ZP_20833763.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|437805846|ref|ZP_20839380.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|437902940|ref|ZP_20849931.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|438088731|ref|ZP_20860021.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|438103842|ref|ZP_20865650.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|438109709|ref|ZP_20867560.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|438136523|ref|ZP_20874437.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|445139554|ref|ZP_21384431.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|445151741|ref|ZP_21390512.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|445167291|ref|ZP_21394359.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|445227985|ref|ZP_21404518.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|445341125|ref|ZP_21416641.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|445347558|ref|ZP_21419213.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|445360696|ref|ZP_21423627.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
gi|197939130|gb|ACH76463.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|206711200|emb|CAR35576.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|326625935|gb|EGE32280.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. SD3246]
gi|357208410|gb|AET56456.1| hypothetical protein SPUL_4233 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|379984067|emb|CCF90118.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Senftenberg str. SS209]
gi|392808422|gb|EJA64472.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19443]
gi|392828895|gb|EJA84580.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19470]
gi|392829377|gb|EJA85054.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19536]
gi|395983498|gb|EJH92690.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 622731-39]
gi|395990633|gb|EJH99763.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 640631]
gi|395991297|gb|EJI00422.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639016-6]
gi|395997052|gb|EJI06094.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-0424]
gi|395998956|gb|EJI07982.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-6]
gi|396004336|gb|EJI13319.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 485549-17]
gi|396016097|gb|EJI24966.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-22]
gi|396016184|gb|EJI25052.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-26]
gi|396017911|gb|EJI26775.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 596866-70]
gi|396025883|gb|EJI34657.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629164-37]
gi|396030910|gb|EJI39639.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-50]
gi|396031000|gb|EJI39728.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 639672-46]
gi|396042678|gb|EJI51299.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-1427]
gi|396044595|gb|EJI53191.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 78-1757]
gi|396045706|gb|EJI54298.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 77-2659]
gi|396052595|gb|EJI61101.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22510-1]
gi|396053704|gb|EJI62198.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648905 5-18]
gi|396059828|gb|EJI68276.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 8b-1]
gi|396065738|gb|EJI74111.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 50-3079]
gi|396066122|gb|EJI74487.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 6-18]
gi|396074842|gb|EJI83126.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 58-6482]
gi|434940545|gb|ELL47161.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Pullorum str. ATCC 9120]
gi|434962021|gb|ELL55254.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS44]
gi|434963196|gb|ELL56319.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22704]
gi|434968984|gb|ELL61710.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1882]
gi|434975467|gb|ELL67755.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1884]
gi|434977488|gb|ELL69606.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1594]
gi|434987228|gb|ELL78870.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1566]
gi|434987571|gb|ELL79211.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1580]
gi|434993859|gb|ELL85243.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1543]
gi|434998886|gb|ELL90099.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE30663]
gi|435001265|gb|ELL92383.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1441]
gi|435004449|gb|ELL95412.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1810]
gi|435006805|gb|ELL97664.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1558]
gi|435013684|gb|ELM04306.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1018]
gi|435017957|gb|ELM08434.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1010]
gi|435024750|gb|ELM14955.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1729]
gi|435031337|gb|ELM21309.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0895]
gi|435035092|gb|ELM24939.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1457]
gi|435037821|gb|ELM27604.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1747]
gi|435040543|gb|ELM30299.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0899]
gi|435053716|gb|ELM43153.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1445]
gi|435055052|gb|ELM44471.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1444]
gi|435058085|gb|ELM47441.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0968]
gi|435059047|gb|ELM48338.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1559]
gi|435063298|gb|ELM52451.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1565]
gi|435070606|gb|ELM59589.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1808]
gi|435082225|gb|ELM70849.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1811]
gi|435084867|gb|ELM73433.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_0956]
gi|435085969|gb|ELM74516.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1455]
gi|435092972|gb|ELM81314.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1745]
gi|435098076|gb|ELM86327.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1725]
gi|435099725|gb|ELM87917.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1575]
gi|435102578|gb|ELM90682.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1791]
gi|435106892|gb|ELM94889.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CDC_2010K_1795]
gi|435115377|gb|ELN03144.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 576709]
gi|435121259|gb|ELN08805.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 635290-58]
gi|435127377|gb|ELN14739.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-19]
gi|435127464|gb|ELN14825.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-16]
gi|435135039|gb|ELN22149.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607307-2]
gi|435138739|gb|ELN25764.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 607308-9]
gi|435140410|gb|ELN27371.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE15-1]
gi|435144519|gb|ELN31360.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 629163]
gi|435151384|gb|ELN38036.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_N202]
gi|435157152|gb|ELN43614.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_76-3618]
gi|435157727|gb|ELN44165.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_56-3991]
gi|435165585|gb|ELN51611.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_81-2490]
gi|435170439|gb|ELN56187.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL909]
gi|435176408|gb|ELN61787.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SL913]
gi|435185396|gb|ELN70263.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CVM_69-4941]
gi|435186499|gb|ELN71330.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 638970-15]
gi|435187736|gb|ELN72479.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 17927]
gi|435189028|gb|ELN73675.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13183-1]
gi|435196976|gb|ELN81293.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. CHS4]
gi|435203871|gb|ELN87608.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 22-17]
gi|435210595|gb|ELN93836.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 22558]
gi|435212364|gb|ELN95362.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 40-18]
gi|435222010|gb|ELO04148.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 1-1]
gi|435223560|gb|ELO05594.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 4-1]
gi|435228452|gb|ELO09896.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642046 4-7]
gi|435229138|gb|ELO10528.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648898 4-5]
gi|435239405|gb|ELO19894.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648900 1-16]
gi|435240232|gb|ELO20648.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648899 3-17]
gi|435245792|gb|ELO25821.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 1-17]
gi|435252278|gb|ELO31875.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648902 6-8]
gi|435254935|gb|ELO34318.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 39-2]
gi|435262414|gb|ELO41504.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648903 1-6]
gi|435266742|gb|ELO45475.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 653049 13-19]
gi|435267111|gb|ELO45823.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 642044 8-1]
gi|435275676|gb|ELO53753.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648904 3-6]
gi|435276384|gb|ELO54395.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 561362 9-7]
gi|435285391|gb|ELO62793.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 648901 16-16]
gi|435286707|gb|ELO63956.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 543463 42-20]
gi|435301929|gb|ELO77928.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 33944]
gi|435311884|gb|ELO85920.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 76-2651]
gi|435317405|gb|ELO90456.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 81-2625]
gi|435320695|gb|ELO93214.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 6.0562-1]
gi|435322858|gb|ELO95045.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 62-1976]
gi|435332182|gb|ELP03142.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 53-407]
gi|444854188|gb|ELX79254.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. SL1438]
gi|444855224|gb|ELX80273.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Dublin str. HWS51]
gi|444865568|gb|ELX90337.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE8a]
gi|444866642|gb|ELX91366.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SE10]
gi|444871796|gb|ELX96190.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 18569]
gi|444876809|gb|ELY00968.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. 13-1]
gi|444884961|gb|ELY08770.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. PT23]
Length = 332
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|429093448|ref|ZP_19156041.1| tRNA dihydrouridine synthase A [Cronobacter dublinensis 1210]
gi|426741682|emb|CCJ82154.1| tRNA dihydrouridine synthase A [Cronobacter dublinensis 1210]
Length = 331
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAHCAKLAEARGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + +
Sbjct: 99 GCPSDRVQNGRFGACLMGEAQLVADCI 125
>gi|16767493|ref|NP_463108.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|167991432|ref|ZP_02572531.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|374981747|ref|ZP_09723070.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|378447562|ref|YP_005235194.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|378453175|ref|YP_005240535.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|378702086|ref|YP_005184044.1| hypothetical protein SL1344_4179 [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|378986919|ref|YP_005250075.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|378991512|ref|YP_005254676.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|379703483|ref|YP_005245211.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|383498823|ref|YP_005399512.1| hypothetical protein UMN798_4602 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|422028484|ref|ZP_16374783.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|422033534|ref|ZP_16379602.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|427557379|ref|ZP_18930106.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|427575211|ref|ZP_18934696.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|427597005|ref|ZP_18939614.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|427621382|ref|ZP_18944496.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|427645326|ref|ZP_18949384.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|427658495|ref|ZP_18954104.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|427663766|ref|ZP_18959011.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|427681699|ref|ZP_18963902.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|427801900|ref|ZP_18969388.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
gi|38604955|sp|Q8ZKH4.1|DUSA_SALTY RecName: Full=tRNA-dihydrouridine synthase A
gi|16422801|gb|AAL23067.1| putative TIM-barrel enzyme [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|205330107|gb|EDZ16871.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|261249341|emb|CBG27204.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267996554|gb|ACY91439.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301160735|emb|CBW20266.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312915348|dbj|BAJ39322.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321223111|gb|EFX48181.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|323132582|gb|ADX20012.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. ST4/74]
gi|332991059|gb|AEF10042.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|380465644|gb|AFD61047.1| hypothetical protein UMN798_4602 [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|414011328|gb|EKS95293.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm1]
gi|414012607|gb|EKS96521.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm8]
gi|414012831|gb|EKS96738.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm2]
gi|414026899|gb|EKT10156.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm9]
gi|414027440|gb|EKT10679.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm3]
gi|414030156|gb|EKT13291.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm4]
gi|414040922|gb|EKT23520.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm6]
gi|414041624|gb|EKT24189.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm10]
gi|414046045|gb|EKT28398.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm11]
gi|414055052|gb|EKT36973.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm12]
gi|414060828|gb|EKT42320.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Typhimurium str. STm5]
Length = 332
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|416519302|ref|ZP_11739838.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363558367|gb|EHL42559.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. ATCC BAA710]
Length = 316
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 39 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 83
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 84 GCPSDRVQNGMFGACLMGNAQLVADCV 110
>gi|422016920|ref|ZP_16363496.1| tRNA-dihydrouridine synthase A [Providencia burhodogranariea DSM
19968]
gi|414091350|gb|EKT53036.1| tRNA-dihydrouridine synthase A [Providencia burhodogranariea DSM
19968]
Length = 342
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y A+ +++ P+ +LG G+D L + AKLAE + I++N+
Sbjct: 65 KGDYLAFSEEEQPVALQLG---------------GSDPAALAQCAKLAEARGYNEINLNV 109
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L D L+ + +
Sbjct: 110 GCPSDRVQNGRFGACLMGDAQLVADCI 136
>gi|197247584|ref|YP_002149157.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|417515016|ref|ZP_12178665.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
gi|440763290|ref|ZP_20942332.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|440766472|ref|ZP_20945462.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|440771036|ref|ZP_20949961.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
gi|197211287|gb|ACH48684.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|353632051|gb|EHC79212.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Senftenberg str. A4-543]
gi|436420321|gb|ELP18186.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH11G1113]
gi|436422620|gb|ELP20452.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH08SF124]
gi|436422882|gb|ELP20705.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Agona str. SH10GFN094]
Length = 332
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|197263333|ref|ZP_03163407.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197241588|gb|EDY24208.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
Length = 332
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|56416043|ref|YP_153118.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|161617371|ref|YP_001591336.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|167552533|ref|ZP_02346286.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|197364970|ref|YP_002144607.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|416423360|ref|ZP_11690749.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|416433040|ref|ZP_11696566.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|416442269|ref|ZP_11702356.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|416447349|ref|ZP_11705794.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|416455473|ref|ZP_11711098.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|416457699|ref|ZP_11712301.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|416482962|ref|ZP_11723950.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|416494314|ref|ZP_11728126.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|416499548|ref|ZP_11730859.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|416506579|ref|ZP_11734797.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|416543311|ref|ZP_11752093.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|416559764|ref|ZP_11760856.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|416568949|ref|ZP_11765137.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|416580782|ref|ZP_11772173.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|416587601|ref|ZP_11776137.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|416592012|ref|ZP_11778833.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|416599971|ref|ZP_11783918.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|416607446|ref|ZP_11788517.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|416615753|ref|ZP_11793665.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|416618197|ref|ZP_11794478.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|416633858|ref|ZP_11802199.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|416644324|ref|ZP_11806707.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|416646520|ref|ZP_11807786.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|416656140|ref|ZP_11813116.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|416669559|ref|ZP_11819525.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|416676793|ref|ZP_11822022.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|416693218|ref|ZP_11826628.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|416708650|ref|ZP_11833512.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|416709933|ref|ZP_11834038.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|416720356|ref|ZP_11842070.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|416726058|ref|ZP_11846119.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|416731500|ref|ZP_11849415.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|416735649|ref|ZP_11851533.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|416745080|ref|ZP_11857038.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|416759652|ref|ZP_11864479.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|416763974|ref|ZP_11867648.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|416770480|ref|ZP_11871832.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|417377338|ref|ZP_12146282.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
gi|418482816|ref|ZP_13051829.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|418486738|ref|ZP_13055684.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|418496396|ref|ZP_13062830.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|418501035|ref|ZP_13067426.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|418503593|ref|ZP_13069952.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|418508252|ref|ZP_13074555.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|418523688|ref|ZP_13089676.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
gi|56130300|gb|AAV79806.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|161366735|gb|ABX70503.1| hypothetical protein SPAB_05226 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|197096447|emb|CAR62053.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|205322837|gb|EDZ10676.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|322615399|gb|EFY12319.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322618459|gb|EFY15348.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322622129|gb|EFY18979.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322627200|gb|EFY23992.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322631160|gb|EFY27924.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322637622|gb|EFY34323.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322643604|gb|EFY40159.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322648339|gb|EFY44798.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322654648|gb|EFY50968.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322659608|gb|EFY55851.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322662183|gb|EFY58399.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322666071|gb|EFY62249.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322672491|gb|EFY68602.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322675920|gb|EFY71991.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322680405|gb|EFY76443.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322684701|gb|EFY80705.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323195965|gb|EFZ81131.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323197105|gb|EFZ82246.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323201777|gb|EFZ86841.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323213302|gb|EFZ98104.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323215672|gb|EGA00416.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323222095|gb|EGA06481.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323226506|gb|EGA10712.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323229131|gb|EGA13260.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323236259|gb|EGA20335.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323237621|gb|EGA21682.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323241713|gb|EGA25742.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323248140|gb|EGA32077.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323254530|gb|EGA38341.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323258410|gb|EGA42087.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323259690|gb|EGA43324.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323265963|gb|EGA49459.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323270405|gb|EGA53853.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|353590260|gb|EHC48829.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Inverness str. R8-3668]
gi|363555177|gb|EHL39409.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB31]
gi|363575485|gb|EHL59336.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 42N]
gi|363576956|gb|EHL60782.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 4441 H]
gi|366056826|gb|EHN21131.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035318]
gi|366062698|gb|EHN26927.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 80959-06]
gi|366067567|gb|EHN31717.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035320]
gi|366071921|gb|EHN36013.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035321]
gi|366072663|gb|EHN36751.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035278]
gi|366079507|gb|EHN43489.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. CT_02035327]
gi|366831210|gb|EHN58076.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|372208000|gb|EHP21496.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008286]
Length = 332
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|405381108|ref|ZP_11034940.1| putative TIM-barrel protein, nifR3 family [Rhizobium sp. CF142]
gi|397322430|gb|EJJ26836.1| putative TIM-barrel protein, nifR3 family [Rhizobium sp. CF142]
Length = 339
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 98 DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKR 156
+ W L GF+ H + G ++ + EA+K+A H D IDIN+GCP
Sbjct: 70 ESWARLRAAGFRP------HMVQLAGREAHWMAEASKIAADHGADIIDINMGCPAKKVIG 123
Query: 157 GHYGAYLQDD 166
G+ G+ L D
Sbjct: 124 GYSGSALMRD 133
>gi|416530644|ref|ZP_11745107.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|416534891|ref|ZP_11747379.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|416550057|ref|ZP_11755735.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|417471394|ref|ZP_12167386.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|418790328|ref|ZP_13346105.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|418794887|ref|ZP_13350602.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|418796080|ref|ZP_13351772.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
gi|353622983|gb|EHC72385.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. S5-403]
gi|363550270|gb|EHL34598.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. LQC 10]
gi|363566997|gb|EHL51010.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. SARB30]
gi|363569120|gb|EHL53084.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 29N]
gi|392758711|gb|EJA15577.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19447]
gi|392760313|gb|EJA17151.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19449]
gi|392770949|gb|EJA27670.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Newport str. CVM 19567]
Length = 332
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|153949073|ref|YP_001402722.1| tRNA-dihydrouridine synthase A [Yersinia pseudotuberculosis IP
31758]
gi|152960568|gb|ABS48029.1| tRNA-dihydrouridine synthase A [Yersinia pseudotuberculosis IP
31758]
Length = 345
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 23/126 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+ Y AY + D P+ +LG G+D + L AKLAE + I++N+
Sbjct: 62 KADYLAYSEQDHPVALQLG---------------GSDPQALAHCAKLAEQRGYNEINLNV 106
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS-------PNMVHFVIAEPHCDGNDINIGCPQ 200
GCP + G +GA L + L+ + + + P V I D + Q
Sbjct: 107 GCPSDRVQNGRFGACLMGEADLVADCIKAMRDAVAIPVTVKTRIGIDQLDSYEFLCEFVQ 166
Query: 201 MVAKRG 206
VA+RG
Sbjct: 167 TVAERG 172
>gi|401761830|ref|YP_006576837.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|400173364|gb|AFP68213.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
ENHKU01]
Length = 331
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + +
Sbjct: 99 GCPSDRVQNGMFGACLMGNAQLVADCI 125
>gi|123475588|ref|XP_001320971.1| dihydrouridine synthase [Trichomonas vaginalis G3]
gi|121903787|gb|EAY08748.1| dihydrouridine synthase, putative [Trichomonas vaginalis G3]
Length = 318
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 125 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 166
D + AAK + DG+D+N+GC Q +A R YG ++ D+
Sbjct: 85 DQDLIVAAAKDLAKYADGVDVNLGCTQKIASRSEYGYFMVDN 126
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
L+ + +++ L + + DG+D+N+GC Q +A R YG ++ D+
Sbjct: 75 LIAQIAGSNEDQDLIVAAAKDLAKYADGVDVNLGCTQKIASRSEYGYFMVDN 126
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 165 DDWPLLTNLVYSPNMVHFVIAE-----PHCDGNDINIGCPQMVAKRGHYGAYLQDD 215
+D PL+ + S ++A + DG D+N+GC Q +A R YG ++ D+
Sbjct: 71 EDHPLIAQIAGSNEDQDLIVAAAKDLAKYADGVDVNLGCTQKIASRSEYGYFMVDN 126
Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDD 41
+ DG+D+N+GC Q +A R YG ++ D+
Sbjct: 99 YADGVDVNLGCTQKIASRSEYGYFMVDN 126
>gi|417792931|ref|ZP_12440235.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii E899]
gi|429117008|ref|ZP_19177926.1| tRNA dihydrouridine synthase A [Cronobacter sakazakii 701]
gi|449306619|ref|YP_007438975.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii SP291]
gi|333952990|gb|EGL70988.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii E899]
gi|426320137|emb|CCK04039.1| tRNA dihydrouridine synthase A [Cronobacter sakazakii 701]
gi|449096652|gb|AGE84686.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii SP291]
Length = 331
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAHCAKLAEARGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + +
Sbjct: 99 GCPSDRVQNGRFGACLMGEAQLVADCI 125
>gi|114046253|ref|YP_736803.1| tRNA-dihydrouridine synthase A [Shewanella sp. MR-7]
gi|113887695|gb|ABI41746.1| TIM-barrel protein, yjbN family [Shewanella sp. MR-7]
Length = 340
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINI 147
RG Y AY Q++ PL +LG G++ L AKLA E D +++N+
Sbjct: 61 RGDYLAYNQEEHPLALQLG---------------GSNPAELARCAKLAAERGYDEVNLNV 105
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ V
Sbjct: 106 GCPSDRVQNGRFGACLMAEPELVAECV 132
>gi|429118938|ref|ZP_19179683.1| tRNA dihydrouridine synthase A [Cronobacter sakazakii 680]
gi|426326596|emb|CCK10420.1| tRNA dihydrouridine synthase A [Cronobacter sakazakii 680]
Length = 331
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAHCAKLAEARGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + +
Sbjct: 99 GCPSDRVQNGRFGACLMGEAQLVADCI 125
>gi|365837578|ref|ZP_09378943.1| tRNA dihydrouridine synthase A [Hafnia alvei ATCC 51873]
gi|364561788|gb|EHM39672.1| tRNA dihydrouridine synthase A [Hafnia alvei ATCC 51873]
Length = 289
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 85 MVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGI 143
++ +G Y AY +++ PL +LG G+D + L A+LAE D +
Sbjct: 7 IIHGKGDYLAYSEEEHPLALQLG---------------GSDPEALAHCARLAEQRGYDEV 51
Query: 144 DINIGCPQMVAKRGHYGAYLQDDWPLLTN 172
++N+GCP + G +GA L + L+ +
Sbjct: 52 NLNVGCPSDRVQNGRFGACLMGEAQLVAD 80
>gi|229525073|ref|ZP_04414478.1| tRNA dihydrouridine synthase A [Vibrio cholerae bv. albensis VL426]
gi|229338654|gb|EEO03671.1| tRNA dihydrouridine synthase A [Vibrio cholerae bv. albensis VL426]
Length = 327
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
RG + AY Q++ P +L F G++ K+L AKLA+ D I++N+
Sbjct: 47 RGDFLAYNQEEHPA---------------ALQFGGSNPKDLAHCAKLAQERGYDEINLNV 91
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
GCP + G +GA L + L+ V + V
Sbjct: 92 GCPSDRVQNGRFGACLMGEPDLVAECVAAMRAV 124
>gi|401678882|ref|ZP_10810835.1| DusA Protein [Enterobacter sp. SST3]
gi|400213867|gb|EJO44800.1| DusA Protein [Enterobacter sp. SST3]
Length = 313
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 36 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 80
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + +
Sbjct: 81 GCPSDRVQNGMFGACLMGNAQLVADCI 107
>gi|422972569|ref|ZP_16975396.1| tRNA-dihydrouridine synthase A [Escherichia coli TA124]
gi|371597806|gb|EHN86625.1| tRNA-dihydrouridine synthase A [Escherichia coli TA124]
Length = 345
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 68 KGDYLAYNEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|170026071|ref|YP_001722576.1| tRNA-dihydrouridine synthase A [Yersinia pseudotuberculosis YPIII]
gi|169752605|gb|ACA70123.1| TIM-barrel protein, yjbN family [Yersinia pseudotuberculosis YPIII]
Length = 345
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 23/126 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+ Y AY + D P+ +LG G+D + L AKLAE + I++N+
Sbjct: 62 KADYLAYSEQDHPVALQLG---------------GSDPQALAHCAKLAEQRGYNEINLNV 106
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS-------PNMVHFVIAEPHCDGNDINIGCPQ 200
GCP + G +GA L + L+ + + + P V I D + Q
Sbjct: 107 GCPSDRVQNGRFGACLMGEADLVADCIKAMRDAVAIPVTVKTRIGIDQLDSYEFLCEFVQ 166
Query: 201 MVAKRG 206
VA+RG
Sbjct: 167 TVAERG 172
>gi|416464894|ref|ZP_11716492.1| tRNA-dihydrouridine synthase A, partial [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322642507|gb|EFY39107.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
Length = 310
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 33 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 77
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 78 GCPSDRVQNGMFGACLMGNAQLVADCV 104
>gi|113971575|ref|YP_735368.1| tRNA-dihydrouridine synthase A [Shewanella sp. MR-4]
gi|113886259|gb|ABI40311.1| TIM-barrel protein, yjbN family [Shewanella sp. MR-4]
Length = 335
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINI 147
RG Y AY Q++ PL +LG G++ L AKLA E D +++N+
Sbjct: 56 RGDYLAYNQEEHPLALQLG---------------GSNPAELARCAKLAAERGYDEVNLNV 100
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ V
Sbjct: 101 GCPSDRVQNGRFGACLMAEPELVAECV 127
>gi|442757563|gb|JAA70940.1| Putative trna-dihydrouridine synthase [Ixodes ricinus]
Length = 451
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 95 YLQDDWPLLTELGFKTRSHMCGHSLMFCGNDS-KNLTEAAKLAEPHCDGIDINIGCPQMV 153
Y+ DD ++ F+T G +++ G S + + AKL E GID+N+GCP+
Sbjct: 62 YIDDDHQIV----FRTCEKERGKNILQIGTCSPERAVQVAKLVEKDVAGIDVNMGCPKEF 117
Query: 154 AKRGHYGAYLQDDW----PLLTNLVYSPNM 179
+ +G GA L +LT LV S +
Sbjct: 118 SLKGGMGAALLTQLDKVKAILTALVQSTTL 147
>gi|420260218|ref|ZP_14762904.1| tRNA-dihydrouridine synthase A [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|404512349|gb|EKA26198.1| tRNA-dihydrouridine synthase A [Yersinia enterocolitica subsp.
enterocolitica WA-314]
Length = 316
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 23/126 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+ Y AY + D P+ +LG G+D + L AKLAE + I++N+
Sbjct: 36 KADYLAYSEQDHPVALQLG---------------GSDPQALAHCAKLAELRGYNEINLNV 80
Query: 148 GCPQMVAKRGHYGAYLQDDWPL-------LTNLVYSPNMVHFVIAEPHCDGNDINIGCPQ 200
GCP + G +GA L + L + ++V P V I D + Q
Sbjct: 81 GCPSDRVQNGRFGACLMAEARLVADCIKAMRDVVSIPVTVKTRIGIDELDSYEFLCEFVQ 140
Query: 201 MVAKRG 206
VA+RG
Sbjct: 141 TVAERG 146
>gi|317493445|ref|ZP_07951866.1| tRNA dihydrouridine synthase A [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316918388|gb|EFV39726.1| tRNA dihydrouridine synthase A [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 337
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 16/85 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ PL +LG G+D + L A+LAE D +++N+
Sbjct: 59 KGDYLAYSEEEHPLALQLG---------------GSDPEALAHCARLAEQRGYDEVNLNV 103
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTN 172
GCP + G +GA L + L+ +
Sbjct: 104 GCPSDRVQNGRFGACLMGEAQLVAD 128
>gi|225712694|gb|ACO12193.1| tRNA-dihydrouridine synthase 4-like [Lepeophtheirus salmonis]
Length = 301
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ F N ++ +A+ L P+ +G+D+N GCPQ A + GA L + ++V S
Sbjct: 69 VQFAANKVQDFVDASVLVAPYAEGVDLNCGCPQSWALKEGIGASLLQKPEFICDVVKSTK 128
Query: 179 MV 180
V
Sbjct: 129 SV 130
>gi|168236934|ref|ZP_02661992.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|194736682|ref|YP_002117177.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|194712184|gb|ACF91405.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197289961|gb|EDY29320.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
Length = 345
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|345297462|ref|YP_004826820.1| yjbN family TIM-barrel protein [Enterobacter asburiae LF7a]
gi|345091399|gb|AEN63035.1| TIM-barrel protein, yjbN family [Enterobacter asburiae LF7a]
Length = 331
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEERGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + +
Sbjct: 99 GCPSDRVQNGMFGACLMGNAQLVADCI 125
>gi|357028544|ref|ZP_09090578.1| tRNA-dihydrouridine synthase A [Mesorhizobium amorphae CCNWGS0123]
gi|355538521|gb|EHH07766.1| tRNA-dihydrouridine synthase A [Mesorhizobium amorphae CCNWGS0123]
Length = 329
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 164
LGF H +L G+D++ L EAA++ E D I++N+GCP + G +GA L
Sbjct: 51 LGFDGAEHPV--ALQLGGSDARKLAEAARIGEAFGYDEINLNVGCPSDRVQSGTFGACLM 108
Query: 165 DDWPLLTNLVYS 176
L+ + V +
Sbjct: 109 KTPVLVADCVAA 120
>gi|238794664|ref|ZP_04638270.1| tRNA-dihydrouridine synthase A [Yersinia intermedia ATCC 29909]
gi|238726053|gb|EEQ17601.1| tRNA-dihydrouridine synthase A [Yersinia intermedia ATCC 29909]
Length = 343
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 23/126 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+ Y AY + D P+ +LG G+D + L AKLAE + I++N+
Sbjct: 62 KADYLAYSEQDHPVALQLG---------------GSDPQALAHCAKLAEQRGYNEINLNV 106
Query: 148 GCPQMVAKRGHYGAYLQDDWPL-------LTNLVYSPNMVHFVIAEPHCDGNDINIGCPQ 200
GCP + G +GA L + L + ++V P V I D + Q
Sbjct: 107 GCPSDRVQNGRFGACLMGEAELVADCIKAMRDVVSIPVTVKTRIGIDQLDSYEFLCEFVQ 166
Query: 201 MVAKRG 206
VA RG
Sbjct: 167 TVADRG 172
>gi|22124488|ref|NP_667911.1| tRNA-dihydrouridine synthase A [Yersinia pestis KIM10+]
gi|45440326|ref|NP_991865.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Microtus
str. 91001]
gi|108809958|ref|YP_653874.1| tRNA-dihydrouridine synthase A [Yersinia pestis Antiqua]
gi|108813513|ref|YP_649280.1| tRNA-dihydrouridine synthase A [Yersinia pestis Nepal516]
gi|145600902|ref|YP_001164978.1| tRNA-dihydrouridine synthase A [Yersinia pestis Pestoides F]
gi|150260637|ref|ZP_01917365.1| tRNA-dihydrouridine synthase A [Yersinia pestis CA88-4125]
gi|162420841|ref|YP_001605835.1| tRNA-dihydrouridine synthase A [Yersinia pestis Angola]
gi|165926732|ref|ZP_02222564.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165936521|ref|ZP_02225089.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. IP275]
gi|166010496|ref|ZP_02231394.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166213918|ref|ZP_02239953.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167402469|ref|ZP_02307926.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167418732|ref|ZP_02310485.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167426194|ref|ZP_02317947.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|167467147|ref|ZP_02331851.1| tRNA-dihydrouridine synthase A [Yersinia pestis FV-1]
gi|218927522|ref|YP_002345397.1| tRNA-dihydrouridine synthase A [Yersinia pestis CO92]
gi|229836573|ref|ZP_04456739.1| tRNA-dihydrouridine synthase A [Yersinia pestis Pestoides A]
gi|229840181|ref|ZP_04460340.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229842263|ref|ZP_04462418.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. India 195]
gi|229903999|ref|ZP_04519112.1| tRNA-dihydrouridine synthase A [Yersinia pestis Nepal516]
gi|270489016|ref|ZP_06206090.1| tRNA dihydrouridine synthase A [Yersinia pestis KIM D27]
gi|294502383|ref|YP_003566445.1| hypothetical protein YPZ3_0273 [Yersinia pestis Z176003]
gi|384120870|ref|YP_005503490.1| hypothetical protein YPD4_0278 [Yersinia pestis D106004]
gi|384124748|ref|YP_005507362.1| hypothetical protein YPD8_0279 [Yersinia pestis D182038]
gi|384137704|ref|YP_005520406.1| tRNA-dihydrouridine synthase A [Yersinia pestis A1122]
gi|384413316|ref|YP_005622678.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420544763|ref|ZP_15042958.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-01]
gi|420550067|ref|ZP_15047702.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-02]
gi|420555518|ref|ZP_15052553.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-03]
gi|420561163|ref|ZP_15057465.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-04]
gi|420566204|ref|ZP_15062011.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-05]
gi|420571833|ref|ZP_15067127.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-06]
gi|420577178|ref|ZP_15071958.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-07]
gi|420582517|ref|ZP_15076821.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-08]
gi|420587659|ref|ZP_15081464.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-09]
gi|420592968|ref|ZP_15086241.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-10]
gi|420598657|ref|ZP_15091342.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-11]
gi|420604186|ref|ZP_15096265.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-12]
gi|420609527|ref|ZP_15101117.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-13]
gi|420614776|ref|ZP_15105797.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-14]
gi|420620227|ref|ZP_15110548.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-15]
gi|420625278|ref|ZP_15115125.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-16]
gi|420630435|ref|ZP_15119808.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-19]
gi|420635564|ref|ZP_15124394.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-25]
gi|420641163|ref|ZP_15129439.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-29]
gi|420646323|ref|ZP_15134173.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-32]
gi|420651967|ref|ZP_15139232.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-34]
gi|420657414|ref|ZP_15144148.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-36]
gi|420662754|ref|ZP_15148912.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-42]
gi|420667746|ref|ZP_15153426.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-45]
gi|420673050|ref|ZP_15158250.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-46]
gi|420678549|ref|ZP_15163255.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-47]
gi|420683778|ref|ZP_15167956.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-48]
gi|420688949|ref|ZP_15172551.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-52]
gi|420694760|ref|ZP_15177632.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-53]
gi|420700014|ref|ZP_15182229.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-54]
gi|420706178|ref|ZP_15187107.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-55]
gi|420711464|ref|ZP_15191904.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-56]
gi|420716826|ref|ZP_15196660.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-58]
gi|420722477|ref|ZP_15201468.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-59]
gi|420728124|ref|ZP_15206486.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-60]
gi|420733219|ref|ZP_15211075.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-61]
gi|420738685|ref|ZP_15216012.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-63]
gi|420743925|ref|ZP_15220705.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-64]
gi|420749802|ref|ZP_15225638.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-65]
gi|420754870|ref|ZP_15230177.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-66]
gi|420760975|ref|ZP_15235026.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-71]
gi|420766146|ref|ZP_15239708.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-72]
gi|420771193|ref|ZP_15244223.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-76]
gi|420776529|ref|ZP_15249041.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-88]
gi|420781987|ref|ZP_15253829.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-89]
gi|420787436|ref|ZP_15258603.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-90]
gi|420792880|ref|ZP_15263509.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-91]
gi|420798052|ref|ZP_15268152.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-92]
gi|420803401|ref|ZP_15272969.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-93]
gi|420808579|ref|ZP_15277657.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-94]
gi|420814376|ref|ZP_15282843.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-95]
gi|420819503|ref|ZP_15287498.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-96]
gi|420824592|ref|ZP_15292045.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-98]
gi|420830402|ref|ZP_15297293.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-99]
gi|420835232|ref|ZP_15301644.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-100]
gi|420840359|ref|ZP_15306289.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-101]
gi|420845966|ref|ZP_15311368.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-102]
gi|420851300|ref|ZP_15316133.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-103]
gi|420856895|ref|ZP_15320840.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-113]
gi|421761744|ref|ZP_16198544.1| tRNA-dihydrouridine synthase A [Yersinia pestis INS]
gi|38604954|sp|Q8ZJ14.1|DUSA_YERPE RecName: Full=tRNA-dihydrouridine synthase A
gi|21957280|gb|AAM84162.1|AE013659_6 hypothetical protein y0574 [Yersinia pestis KIM10+]
gi|45435182|gb|AAS60742.1| Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family
[Yersinia pestis biovar Microtus str. 91001]
gi|108777161|gb|ABG19680.1| hypothetical protein YPN_3353 [Yersinia pestis Nepal516]
gi|108781871|gb|ABG15929.1| hypothetical protein YPA_3968 [Yersinia pestis Antiqua]
gi|115346133|emb|CAL19001.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145212598|gb|ABP42005.1| hypothetical protein YPDSF_3655 [Yersinia pestis Pestoides F]
gi|149290045|gb|EDM40122.1| tRNA-dihydrouridine synthase A [Yersinia pestis CA88-4125]
gi|162353656|gb|ABX87604.1| tRNA-dihydrouridine synthase A [Yersinia pestis Angola]
gi|165915637|gb|EDR34246.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. IP275]
gi|165921355|gb|EDR38579.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165990586|gb|EDR42887.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166204893|gb|EDR49373.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166962726|gb|EDR58747.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167048157|gb|EDR59565.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167054905|gb|EDR64707.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|229679769|gb|EEO75872.1| tRNA-dihydrouridine synthase A [Yersinia pestis Nepal516]
gi|229690573|gb|EEO82627.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. India 195]
gi|229696547|gb|EEO86594.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229706257|gb|EEO92265.1| tRNA-dihydrouridine synthase A [Yersinia pestis Pestoides A]
gi|262360466|gb|ACY57187.1| hypothetical protein YPD4_0278 [Yersinia pestis D106004]
gi|262364412|gb|ACY60969.1| hypothetical protein YPD8_0279 [Yersinia pestis D182038]
gi|270337520|gb|EFA48297.1| tRNA dihydrouridine synthase A [Yersinia pestis KIM D27]
gi|294352842|gb|ADE63183.1| hypothetical protein YPZ3_0273 [Yersinia pestis Z176003]
gi|320013820|gb|ADV97391.1| tRNA-dihydrouridine synthase A [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342852833|gb|AEL71386.1| tRNA-dihydrouridine synthase A [Yersinia pestis A1122]
gi|391432821|gb|EIQ94225.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-01]
gi|391433794|gb|EIQ95074.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-02]
gi|391436489|gb|EIQ97440.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-03]
gi|391448818|gb|EIR08596.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-04]
gi|391449521|gb|EIR09240.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-05]
gi|391451830|gb|EIR11293.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-06]
gi|391464830|gb|EIR23075.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-07]
gi|391466407|gb|EIR24480.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-08]
gi|391468483|gb|EIR26354.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-09]
gi|391482090|gb|EIR38566.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-10]
gi|391482864|gb|EIR39279.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-12]
gi|391483187|gb|EIR39575.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-11]
gi|391497049|gb|EIR51943.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-13]
gi|391497975|gb|EIR52787.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-15]
gi|391501490|gb|EIR55892.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-14]
gi|391512760|gb|EIR66051.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-16]
gi|391514298|gb|EIR67417.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-19]
gi|391516099|gb|EIR69025.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-25]
gi|391528314|gb|EIR80144.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-29]
gi|391531127|gb|EIR82643.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-34]
gi|391532381|gb|EIR83778.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-32]
gi|391545340|gb|EIR95443.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-36]
gi|391547026|gb|EIR96962.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-42]
gi|391547813|gb|EIR97671.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-45]
gi|391561446|gb|EIS09971.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-46]
gi|391562618|gb|EIS11012.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-47]
gi|391564746|gb|EIS12922.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-48]
gi|391576828|gb|EIS23328.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-52]
gi|391577637|gb|EIS24031.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-53]
gi|391588895|gb|EIS33856.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-55]
gi|391592175|gb|EIS36646.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-54]
gi|391592909|gb|EIS37280.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-56]
gi|391605850|gb|EIS48668.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-60]
gi|391607726|gb|EIS50292.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-58]
gi|391608296|gb|EIS50802.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-59]
gi|391620412|gb|EIS61571.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-61]
gi|391621267|gb|EIS62329.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-63]
gi|391629763|gb|EIS69645.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-64]
gi|391631857|gb|EIS71442.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-65]
gi|391643090|gb|EIS81290.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-71]
gi|391645886|gb|EIS83713.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-72]
gi|391649002|gb|EIS86453.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-66]
gi|391655599|gb|EIS92321.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-76]
gi|391662436|gb|EIS98366.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-88]
gi|391667553|gb|EIT02874.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-89]
gi|391669189|gb|EIT04347.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-90]
gi|391672966|gb|EIT07731.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-91]
gi|391686879|gb|EIT20254.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-93]
gi|391688326|gb|EIT21552.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-92]
gi|391689662|gb|EIT22768.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-94]
gi|391701023|gb|EIT33065.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-95]
gi|391704128|gb|EIT35810.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-96]
gi|391704880|gb|EIT36495.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-98]
gi|391715593|gb|EIT46117.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-99]
gi|391720457|gb|EIT50478.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-100]
gi|391721025|gb|EIT51002.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-101]
gi|391731554|gb|EIT60242.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-102]
gi|391734126|gb|EIT62419.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-103]
gi|391737417|gb|EIT65304.1| tRNA dihydrouridine synthase A family protein [Yersinia pestis
PY-113]
gi|411178066|gb|EKS48078.1| tRNA-dihydrouridine synthase A [Yersinia pestis INS]
Length = 345
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 23/126 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+ Y AY + D P+ +LG G+D + L AKLAE + I++N+
Sbjct: 62 KADYLAYSEQDHPVALQLG---------------GSDPQALAHCAKLAEQRGYNEINLNV 106
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS-------PNMVHFVIAEPHCDGNDINIGCPQ 200
GCP + G +GA L + L+ + + + P V I D + Q
Sbjct: 107 GCPSDRVQNGRFGACLMGEADLVADCIKAMRDAVAIPVTVKTRIGIDQLDSYEFLCEFVQ 166
Query: 201 MVAKRG 206
VA+RG
Sbjct: 167 TVAERG 172
>gi|156932320|ref|YP_001436236.1| tRNA-dihydrouridine synthase A [Cronobacter sakazakii ATCC BAA-894]
gi|156530574|gb|ABU75400.1| hypothetical protein ESA_00095 [Cronobacter sakazakii ATCC BAA-894]
Length = 313
Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 36 KGDYLAYSEEEHPVALQLG---------------GSDPAALAHCAKLAEARGYDEINLNV 80
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G +GA L + L+ + + +
Sbjct: 81 GCPSDRVQNGRFGACLMGEAQLVADCIKA 109
>gi|422024011|ref|ZP_16370512.1| tRNA-dihydrouridine synthase A [Providencia sneebia DSM 19967]
gi|414091411|gb|EKT53096.1| tRNA-dihydrouridine synthase A [Providencia sneebia DSM 19967]
Length = 342
Score = 39.7 bits (91), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y A+ +++ P+ +LG G+D L + AKL E D I++N+
Sbjct: 65 KGDYLAFSEEEQPVALQLG---------------GSDPAALAQCAKLGEERGYDEINLNV 109
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L D L+ + +
Sbjct: 110 GCPSDRVQNGRFGACLMADAQLVADCI 136
>gi|241615739|ref|XP_002406800.1| tRNA-dihydrouridine synthase, putative [Ixodes scapularis]
gi|215500870|gb|EEC10364.1| tRNA-dihydrouridine synthase, putative [Ixodes scapularis]
Length = 449
Score = 39.7 bits (91), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 95 YLQDDWPLLTELGFKTRSHMCGHSLMFCGNDS-KNLTEAAKLAEPHCDGIDINIGCPQMV 153
Y+ DD ++ F+T G +++ G S + + AKL E GID+N+GCP+
Sbjct: 62 YIDDDHQIV----FRTCEKERGKNILQIGTCSPERAVQVAKLVEKDVAGIDVNMGCPKEF 117
Query: 154 AKRGHYGAYLQDDW----PLLTNLVYSPNM 179
+ +G GA L +LT LV S +
Sbjct: 118 SLKGGMGAALLTQLDKVKAILTALVQSTTL 147
>gi|51594726|ref|YP_068917.1| tRNA-dihydrouridine synthase A [Yersinia pseudotuberculosis IP
32953]
gi|186893729|ref|YP_001870841.1| tRNA-dihydrouridine synthase A [Yersinia pseudotuberculosis PB1/+]
gi|51588008|emb|CAH19612.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|186696755|gb|ACC87384.1| TIM-barrel protein, yjbN family [Yersinia pseudotuberculosis PB1/+]
Length = 345
Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 23/126 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+ Y AY + D P+ +LG G+D + L AKLAE + I++N+
Sbjct: 62 KADYLAYSEQDHPVALQLG---------------GSDPQALAHCAKLAEQRGYNEINLNV 106
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS-------PNMVHFVIAEPHCDGNDINIGCPQ 200
GCP + G +GA L + L+ + + + P V I D + Q
Sbjct: 107 GCPSDRVQNGRFGACLMGEADLVADCIKAMRDAVAIPVTVKTRIGIDQLDSYEFLCEFVQ 166
Query: 201 MVAKRG 206
VA+RG
Sbjct: 167 TVAERG 172
>gi|224093091|ref|XP_002192992.1| PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like
[Taeniopygia guttata]
Length = 316
Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F +++ L +AA + P DGID+N GCPQ A YGA L + L+ ++V
Sbjct: 84 VQFAAKEAQVLCDAACIICPFADGIDVNCGCPQRWAISEGYGACLINKPELVKDMV 139
>gi|397166048|ref|ZP_10489494.1| tRNA dihydrouridine synthase A family protein [Enterobacter
radicincitans DSM 16656]
gi|396092210|gb|EJI89774.1| tRNA dihydrouridine synthase A family protein [Enterobacter
radicincitans DSM 16656]
Length = 339
Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLA+ D I++N+
Sbjct: 62 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAQARGYDEINLNV 106
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 107 GCPSDRVQNGRFGACLMGEAQLVADCV 133
>gi|418021051|ref|ZP_12660210.1| tRNA dihydrouridine synthase A( EC:1.- ) [Candidatus Regiella
insecticola R5.15]
gi|347603596|gb|EGY28402.1| tRNA dihydrouridine synthase A( EC:1.- ) [Candidatus Regiella
insecticola R5.15]
Length = 311
Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 16/91 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+ Y AY + D P++ +LG G+D K L + AKL + + I++NI
Sbjct: 36 KADYLAYSEQDHPVVLQLG---------------GSDPKTLADCAKLGQQRGYNEINLNI 80
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
GCP + G +GA L + L+ + + + N
Sbjct: 81 GCPSDRVQNGRFGACLMGEADLVADCIKAMN 111
>gi|359684072|ref|ZP_09254073.1| tRNA-dihydrouridine synthase A [Leptospira santarosai str.
2000030832]
Length = 312
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
R + +Y ++ PL +LG G+D K L+E++K+ E + I++N+
Sbjct: 70 RHRFLSYNPEELPLAIQLG---------------GDDPKALSESSKIGEDYGYSEINLNV 114
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G++GA L + LV++
Sbjct: 115 GCPSDRVREGNFGACLMKTPERVAELVFA 143
>gi|375266803|ref|YP_005024246.1| tRNA-dihydrouridine synthase A [Vibrio sp. EJY3]
gi|369842123|gb|AEX23267.1| tRNA-dihydrouridine synthase A [Vibrio sp. EJY3]
Length = 326
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G + AY +++ PL +LG G++ ++L + AKLAE D I++N+
Sbjct: 47 KGDFLAYNEEEHPLALQLG---------------GSNPEDLAKCAKLAEERGYDEINLNV 91
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 92 GCPSDRVQNGRFGACLMAEPQLVADCV 118
>gi|402822222|ref|ZP_10871720.1| dihydrouridine synthase TIM-barrel protein nifR3 [Sphingomonas sp.
LH128]
gi|402264246|gb|EJU14111.1| dihydrouridine synthase TIM-barrel protein nifR3 [Sphingomonas sp.
LH128]
Length = 343
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
S+ G D + + EAAKL E I DIN+GCP G G+ L PL T L+ +
Sbjct: 80 SMQLVGCDPEQMGEAAKLVEDRGAAIIDINMGCPVRKVVNGDAGSALMRQVPLATKLIEA 139
>gi|418024442|ref|ZP_12663425.1| TIM-barrel protein, yjbN family [Shewanella baltica OS625]
gi|353536402|gb|EHC05961.1| TIM-barrel protein, yjbN family [Shewanella baltica OS625]
Length = 334
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 59/148 (39%), Gaps = 33/148 (22%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINI 147
RG Y AY Q++ PL +LG G++ +L AKLA E D +++N+
Sbjct: 56 RGDYLAYNQEEHPLALQLG---------------GSNPVDLARCAKLAAERGYDEVNLNV 100
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGH 207
GCP + G +GA L + L+ V + V + P V R
Sbjct: 101 GCPSDRVQNGRFGACLMAEPELVAECVDAMKQV---------------VDIPVTVKTR-- 143
Query: 208 YGAYLQDDWPLLTELGKMAMLVGILDNT 235
G QD + LT+ + G D T
Sbjct: 144 IGIDEQDSYAFLTQFIDVVSAKGCTDFT 171
>gi|99080805|ref|YP_612959.1| tRNA-dihydrouridine synthase A [Ruegeria sp. TM1040]
gi|99037085|gb|ABF63697.1| TIM-barrel protein yjbN family [Ruegeria sp. TM1040]
Length = 336
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 118 SLMFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+L G+D K L EAA+L AE D I++N GCP + G +GA L L+ + V +
Sbjct: 72 ALQLGGSDPKELAEAARLGAEAGYDEINLNCGCPSDRVQSGAFGAVLMQTPELVADCVAA 131
>gi|117919170|ref|YP_868362.1| tRNA-dihydrouridine synthase A [Shewanella sp. ANA-3]
gi|117611502|gb|ABK46956.1| TIM-barrel protein, yjbN family [Shewanella sp. ANA-3]
Length = 334
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINI 147
RG Y AY Q++ PL +LG G++ L AKLA E D +++N+
Sbjct: 56 RGDYLAYNQEEHPLALQLG---------------GSNPAELARCAKLAAERGYDEVNLNV 100
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ V
Sbjct: 101 GCPSDRVQNGRFGACLMAEPELVAECV 127
>gi|395791144|ref|ZP_10470602.1| tRNA dihydrouridine synthase A [Bartonella alsatica IBS 382]
gi|395408507|gb|EJF75117.1| tRNA dihydrouridine synthase A [Bartonella alsatica IBS 382]
Length = 326
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYL 163
+L G DSK L EAA++AE D I++N+GCP + G +GA L
Sbjct: 67 ALQLGGADSKKLAEAARIAEEFGYDEINLNVGCPSNRVQAGVFGACL 113
>gi|406859245|gb|EKD12313.1| dihydrouridine synthase [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 354
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQD-DWPLLTELVVHFSWVSKNGPLFM--GPL 66
ET G+D+ + P ++AK + A +D D+ L + N P M L
Sbjct: 38 ETVARVGGVDL-VWTPMILAKEFNRSALARDSDFTLAPSPTPTIVQLGVNSPQEMHRSTL 96
Query: 67 FIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSL 119
+A PH +GIDIN GCPQ A GA L L++ L +S + L
Sbjct: 97 LLA-PHVNGIDINCGCPQSWACAETLGAALMHQPALVSALVRSAKSALASLGL 148
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 24/110 (21%)
Query: 75 GIDINIGCPQMVAKRGHYGAYLQDD--------WPLLTELGFKTRSHMCGHSLMFCGNDS 126
G+D+ + P ++AK + A +D P + +LG + M +L+
Sbjct: 45 GVDL-VWTPMILAKEFNRSALARDSDFTLAPSPTPTIVQLGVNSPQEMHRSTLLLA---- 99
Query: 127 KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
PH +GIDIN GCPQ A GA L L++ LV S
Sbjct: 100 -----------PHVNGIDINCGCPQSWACAETLGAALMHQPALVSALVRS 138
>gi|338731411|ref|YP_004660803.1| dihydrouridine synthase DuS [Thermotoga thermarum DSM 5069]
gi|335365762|gb|AEH51707.1| dihydrouridine synthase DuS [Thermotoga thermarum DSM 5069]
Length = 323
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCP-QMVAKRGHYGAYLQD 165
++ GND + +AAK+ EP I+IN CP + V K+G GA L+D
Sbjct: 66 AVQLFGNDPNRMAQAAKVVEPFACWININAACPAKKVLKKGSGGALLKD 114
>gi|126175780|ref|YP_001051929.1| tRNA-dihydrouridine synthase A [Shewanella baltica OS155]
gi|386342526|ref|YP_006038892.1| yjbN family TIM-barrel protein [Shewanella baltica OS117]
gi|125998985|gb|ABN63060.1| TIM-barrel protein, yjbN family [Shewanella baltica OS155]
gi|334864927|gb|AEH15398.1| TIM-barrel protein, yjbN family [Shewanella baltica OS117]
Length = 339
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 59/148 (39%), Gaps = 33/148 (22%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINI 147
RG Y AY Q++ PL +LG G++ +L AKLA E D +++N+
Sbjct: 61 RGDYLAYNQEEHPLALQLG---------------GSNPVDLARCAKLAAERGYDEVNLNV 105
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGH 207
GCP + G +GA L + L+ V + V + P V R
Sbjct: 106 GCPSDRVQNGRFGACLMAEPELVAECVDAMKQV---------------VDIPVTVKTR-- 148
Query: 208 YGAYLQDDWPLLTELGKMAMLVGILDNT 235
G QD + LT+ + G D T
Sbjct: 149 IGIDEQDSYAFLTQFIDVVSAKGCTDFT 176
>gi|260599558|ref|YP_003212129.1| tRNA-dihydrouridine synthase A [Cronobacter turicensis z3032]
gi|260218735|emb|CBA34083.1| tRNA-dihydrouridine synthase A [Cronobacter turicensis z3032]
Length = 349
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY ++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 72 KGDYLAYSDEEHPVALQLG---------------GSDPAALAHCAKLAEARGYDEINLNV 116
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 117 GCPSDRVQNGRFGACLMGEAQLVADCV 143
>gi|217971989|ref|YP_002356740.1| tRNA-dihydrouridine synthase A [Shewanella baltica OS223]
gi|217497124|gb|ACK45317.1| TIM-barrel protein, yjbN family [Shewanella baltica OS223]
Length = 339
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINI 147
RG Y AY Q++ PL +LG G++ +L AKLA E D +++N+
Sbjct: 61 RGDYLAYNQEEHPLALQLG---------------GSNPVDLARCAKLAAERGYDEVNLNV 105
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ V
Sbjct: 106 GCPSDRVQNGRFGACLMAEPELVAECV 132
>gi|298708539|emb|CBJ49172.1| FAD binding / catalytic/ tRNA dihydrouridine synthase [Ectocarpus
siliculosus]
Length = 469
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 119 LMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNL 173
L G+D+ ++ EA +LA P+ D I++N GCP + VA +G +GA L L+ +L
Sbjct: 141 LQIGGSDTTDVREACRLARPYKYDAINLNCGCPSEKVAGKGAFGAALMRSPSLVKDL 197
>gi|160873928|ref|YP_001553244.1| tRNA-dihydrouridine synthase A [Shewanella baltica OS195]
gi|378707171|ref|YP_005272065.1| yjbN family TIM-barrel protein [Shewanella baltica OS678]
gi|160859450|gb|ABX47984.1| TIM-barrel protein, yjbN family [Shewanella baltica OS195]
gi|315266160|gb|ADT93013.1| TIM-barrel protein, yjbN family [Shewanella baltica OS678]
Length = 339
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 59/148 (39%), Gaps = 33/148 (22%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINI 147
RG Y AY Q++ PL +LG G++ +L AKLA E D +++N+
Sbjct: 61 RGDYLAYNQEEHPLALQLG---------------GSNPVDLARCAKLAAERGYDEVNLNV 105
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGH 207
GCP + G +GA L + L+ V + V + P V R
Sbjct: 106 GCPSDRVQNGRFGACLMAEPELVAECVDAMKQV---------------VDIPVTVKTR-- 148
Query: 208 YGAYLQDDWPLLTELGKMAMLVGILDNT 235
G QD + LT+ + G D T
Sbjct: 149 IGIDEQDSYAFLTQFIDVVSAKGCTDFT 176
>gi|238752153|ref|ZP_04613635.1| tRNA-dihydrouridine synthase A [Yersinia rohdei ATCC 43380]
gi|238709626|gb|EEQ01862.1| tRNA-dihydrouridine synthase A [Yersinia rohdei ATCC 43380]
Length = 348
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 23/126 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY + D P+ +LG G+D + L AKLAE + I++N+
Sbjct: 68 KGDYLAYSEQDHPVALQLG---------------GSDPQALAHCAKLAELRGYNEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS-------PNMVHFVIAEPHCDGNDINIGCPQ 200
GCP + G +GA L + L+ + + + P V I D + Q
Sbjct: 113 GCPSDRVQNGRFGACLMAEASLVADCIKAMRDAVTIPVTVKTRIGIDQLDSYEFLCEFVQ 172
Query: 201 MVAKRG 206
VA++G
Sbjct: 173 TVAEQG 178
>gi|429098155|ref|ZP_19160261.1| tRNA dihydrouridine synthase A [Cronobacter dublinensis 582]
gi|426284495|emb|CCJ86374.1| tRNA dihydrouridine synthase A [Cronobacter dublinensis 582]
Length = 331
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D +++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAHCAKLAEARGYDEVNLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + +
Sbjct: 99 GCPSDRVQNGRFGACLMGEAQLVADCI 125
>gi|423313199|ref|ZP_17291135.1| tRNA dihydrouridine synthase A [Bacteroides vulgatus CL09T03C04]
gi|392686413|gb|EIY79719.1| tRNA dihydrouridine synthase A [Bacteroides vulgatus CL09T03C04]
Length = 329
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 118 SLMFCGNDSKNLTEAAKLAE-PHCDGIDINIGCP-QMVAKRGHYGAYLQDDWPLLTNLVY 175
++ G D++ + EAAK+AE H D +DIN GCP + VA +G GA + + PL+ +
Sbjct: 69 AIQIYGRDTETMVEAAKIAEEAHPDILDINFGCPVKRVAGKGA-GAGMLQNIPLMLEITR 127
Query: 176 S 176
+
Sbjct: 128 A 128
>gi|152999313|ref|YP_001364994.1| tRNA-dihydrouridine synthase A [Shewanella baltica OS185]
gi|151363931|gb|ABS06931.1| TIM-barrel protein, yjbN family [Shewanella baltica OS185]
Length = 339
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINI 147
RG Y AY Q++ PL +LG G++ +L AKLA E D +++N+
Sbjct: 61 RGDYLAYNQEEHPLALQLG---------------GSNPVDLARCAKLAAERGYDEVNLNV 105
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ V
Sbjct: 106 GCPSDRVQNGRFGACLMAEPELVAECV 132
>gi|395784300|ref|ZP_10464139.1| tRNA dihydrouridine synthase A [Bartonella melophagi K-2C]
gi|395424055|gb|EJF90243.1| tRNA dihydrouridine synthase A [Bartonella melophagi K-2C]
Length = 326
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYL 163
+L G+DS+ L EAA++AE D I++N+GCP + G +GA L
Sbjct: 67 ALQLGGSDSQKLAEAARIAEDFGYDEINLNVGCPSNRVQAGMFGACL 113
>gi|209694000|ref|YP_002261928.1| tRNA-dihydrouridine synthase A [Aliivibrio salmonicida LFI1238]
gi|208007951|emb|CAQ78084.1| tRNA-dihydrouridine synthase A [Aliivibrio salmonicida LFI1238]
Length = 338
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G + AY +++ PL +LG G+++K+L AKLA D I++N+
Sbjct: 59 KGDFLAYNEEEHPLALQLG---------------GSNAKDLAHCAKLAADRGYDEINLNV 103
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L D L+ +
Sbjct: 104 GCPSDRVQNGRFGACLMADPELVAECI 130
>gi|114799466|ref|YP_760712.1| putative tRNA-dihydrouridine synthase [Hyphomonas neptunium ATCC
15444]
gi|114739640|gb|ABI77765.1| putative tRNA-dihydrouridine synthase [Hyphomonas neptunium ATCC
15444]
Length = 345
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 61 LFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ G + +AE D IDIN+GCP G G+ L D PL E+
Sbjct: 90 MLAGAVLMAEAGVDVIDINMGCPSKQVTGGQSGSALMRDLPLAGEI 135
>gi|88811969|ref|ZP_01127222.1| Dihydrouridine synthase TIM-barrel protein yjbN [Nitrococcus
mobilis Nb-231]
gi|88790853|gb|EAR21967.1| Dihydrouridine synthase TIM-barrel protein yjbN [Nitrococcus
mobilis Nb-231]
Length = 295
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 164
L + + H ++ F G+D + L A++AE + D +++N+GCP + G +GA L
Sbjct: 16 LAYNSEEHPV--AVQFGGSDPRQLAYCARMAEAYGYDEVNLNVGCPSERVQAGRFGACLM 73
Query: 165 DDWPLLTNLV 174
+ L+ LV
Sbjct: 74 AEPNLVAELV 83
>gi|418745884|ref|ZP_13302219.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. CBC379]
gi|418754487|ref|ZP_13310713.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. MOR084]
gi|409965207|gb|EKO33078.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. MOR084]
gi|410793268|gb|EKR91188.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. CBC379]
Length = 344
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
R + +Y ++ PL +LG G+D K L+E++K+ E + I++N+
Sbjct: 55 RHRFLSYNPEELPLAIQLG---------------GDDPKALSESSKIGEDYGYSEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G++GA L + LV++
Sbjct: 100 GCPSDRVREGNFGACLMKTPERVAELVFA 128
>gi|347968560|ref|XP_312125.4| AGAP002791-PA [Anopheles gambiae str. PEST]
gi|333467945|gb|EAA07861.4| AGAP002791-PA [Anopheles gambiae str. PEST]
Length = 412
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
F N++ + A+++ P+ DG+D+N GCPQ A YG+ L L+ +++
Sbjct: 81 FAANNTIDFLSASEMVYPYVDGVDLNCGCPQRWAMAEGYGSALLKTPELIADML 134
>gi|442319612|ref|YP_007359633.1| tRNA-dihydrouridine synthase A [Myxococcus stipitatus DSM 14675]
gi|441487254|gb|AGC43949.1| tRNA-dihydrouridine synthase A [Myxococcus stipitatus DSM 14675]
Length = 332
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 93 GAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQ 151
GA L D L LG++ H ++ G++ + L E+A++AE D +++N+GCP
Sbjct: 43 GAVLHGDRERL--LGYEPAEHPV--AIQLGGSEPEALAESARIAEAWGYDEVNLNVGCPS 98
Query: 152 MVAKRGHYGAYLQDDWPLLTNLVYS 176
+ G +GA L + L+ LV +
Sbjct: 99 DRVQSGRFGACLMAEPELVARLVAA 123
>gi|375103678|ref|ZP_09749939.1| tRNA-dihydrouridine synthase [Burkholderiales bacterium JOSHI_001]
gi|374664409|gb|EHR69194.1| tRNA-dihydrouridine synthase [Burkholderiales bacterium JOSHI_001]
Length = 311
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 121 FCGNDSKNLTE-AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
G+D L + AA+LAE +G+D+N GCP R GA L D+ LL +V +
Sbjct: 58 LLGSDPACLADNAARLAELGAEGVDLNFGCPAKTVNRHRGGAVLLDEPELLHRIVRA 114
>gi|300724718|ref|YP_003714043.1| tRNA -dihydrouridine synthase A [Xenorhabdus nematophila ATCC
19061]
gi|297631260|emb|CBJ91955.1| tRNA-dihydrouridine synthase A [Xenorhabdus nematophila ATCC 19061]
Length = 342
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINI 147
+G Y AY + + PL +LG G++ + L + A++A E D I++N+
Sbjct: 65 KGDYLAYNEQEHPLALQLG---------------GSEPQALAQCARIAQEKGYDEINLNV 109
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L D L+ + V
Sbjct: 110 GCPSDRVQNGRFGACLMGDAALVADCV 136
>gi|383772754|ref|YP_005451820.1| tRNA-dihydrouridine synthase A [Bradyrhizobium sp. S23321]
gi|381360878|dbj|BAL77708.1| tRNA-dihydrouridine synthase A [Bradyrhizobium sp. S23321]
Length = 309
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 93 GAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQ 151
GA + D L LGF H +L G+D + L AA++ AE D I++N+GCP
Sbjct: 20 GAIIHGDRARL--LGFDAVEHPV--ALQLGGSDPQELATAARIGAEFGYDEINLNVGCPS 75
Query: 152 MVAKRGHYGAYLQDDWPLLTNLVYS 176
K G +GA L + L+ V +
Sbjct: 76 DRVKDGRFGACLMAEPELVARCVEA 100
>gi|372275615|ref|ZP_09511651.1| tRNA-dihydrouridine synthase A [Pantoea sp. SL1_M5]
Length = 330
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY + + P+ +LG G+D L + AKLAE D +++N+
Sbjct: 49 KGDYLAYSEAEHPVALQLG---------------GSDPAALAQCAKLAEQRGYDEVNLNV 93
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G +GA L + L+ + V +
Sbjct: 94 GCPSDRVQNGRFGACLMAEANLVADAVKA 122
>gi|323457319|gb|EGB13185.1| hypothetical protein AURANDRAFT_19510, partial [Aureococcus
anophagefferens]
Length = 217
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDD 41
HCD +++N+GCPQ AK+ GA+L +D
Sbjct: 120 HCDAVELNMGCPQRCAKKTGSGAFLMED 147
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 72 HCDGIDINIGCPQMVAKRGHYGAYLQDD 99
HCD +++N+GCPQ AK+ GA+L +D
Sbjct: 120 HCDAVELNMGCPQRCAKKTGSGAFLMED 147
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 139 HCDGIDINIGCPQMVAKRGHYGAYLQDD 166
HCD +++N+GCPQ AK+ GA+L +D
Sbjct: 120 HCDAVELNMGCPQRCAKKTGSGAFLMED 147
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 188 HCDGNDINIGCPQMVAKRGHYGAYLQDD 215
HCD ++N+GCPQ AK+ GA+L +D
Sbjct: 120 HCDAVELNMGCPQRCAKKTGSGAFLMED 147
>gi|218660217|ref|ZP_03516147.1| tRNA-dihydrouridine synthase A [Rhizobium etli IE4771]
Length = 249
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 111 RSHMCGH-------SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAY 162
R + GH +L G+D L EA ++AEP+ D I++N+GCP + G +GA
Sbjct: 49 RERLLGHDVAEHPLALQLGGSDPGKLAEAVRIAEPYGYDEINLNVGCPSDRVQSGTFGAC 108
Query: 163 L 163
L
Sbjct: 109 L 109
>gi|311281407|ref|YP_003943638.1| yjbN family TIM-barrel protein [Enterobacter cloacae SCF1]
gi|308750602|gb|ADO50354.1| TIM-barrel protein, yjbN family [Enterobacter cloacae SCF1]
Length = 332
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLA+ D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAQARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|295095415|emb|CBK84505.1| tRNA-U16,U17-dihydrouridine synthase [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 331
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEERGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + +
Sbjct: 99 GCPSDRVQNGMFGACLMGNAHLVADCI 125
>gi|398338004|ref|ZP_10522709.1| tRNA-dihydrouridine synthase A [Leptospira kmetyi serovar Malaysia
str. Bejo-Iso9]
Length = 339
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
R + +Y ++ PL +LG G+D+K L +++K++E + I++N+
Sbjct: 55 RHRFLSYSPEELPLAIQLG---------------GDDAKALAQSSKISEEYGYSEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G++GA L + + +LV
Sbjct: 100 GCPSDRVREGNFGACLMETPEKVADLV 126
>gi|390437556|ref|ZP_10226094.1| tRNA-dihydrouridine synthase A [Pantoea agglomerans IG1]
Length = 330
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY + + P+ +LG G+D L + AKLAE D +++N+
Sbjct: 49 KGDYLAYSEAEHPVALQLG---------------GSDPAALAQCAKLAEQRGYDEVNLNV 93
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G +GA L + L+ + V +
Sbjct: 94 GCPSDRVQNGRFGACLMAEANLVADAVKA 122
>gi|347968562|ref|XP_003436246.1| AGAP002791-PB [Anopheles gambiae str. PEST]
gi|347968564|ref|XP_003436247.1| AGAP002791-PC [Anopheles gambiae str. PEST]
gi|333467946|gb|EGK96765.1| AGAP002791-PB [Anopheles gambiae str. PEST]
gi|333467947|gb|EGK96766.1| AGAP002791-PC [Anopheles gambiae str. PEST]
Length = 362
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
F N++ + A+++ P+ DG+D+N GCPQ A YG+ L L+ +++
Sbjct: 31 FAANNTIDFLSASEMVYPYVDGVDLNCGCPQRWAMAEGYGSALLKTPELIADML 84
>gi|422005791|ref|ZP_16352957.1| tRNA-dihydrouridine synthase A [Leptospira santarosai serovar
Shermani str. LT 821]
gi|417255540|gb|EKT85011.1| tRNA-dihydrouridine synthase A [Leptospira santarosai serovar
Shermani str. LT 821]
Length = 344
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
R + +Y ++ PL +LG G+D K L+E++K+ E + I++N+
Sbjct: 55 RHRFLSYNPEELPLAIQLG---------------GDDPKALSESSKIGEDYGYSEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G++GA L + LV++
Sbjct: 100 GCPSDRVREGNFGACLMKTPERVAELVFA 128
>gi|421112110|ref|ZP_15572574.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. JET]
gi|410802519|gb|EKS08673.1| tRNA dihydrouridine synthase A [Leptospira santarosai str. JET]
Length = 344
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
R + +Y ++ PL +LG G+D K L+E++K+ E + I++N+
Sbjct: 55 RHRFLSYNPEELPLAIQLG---------------GDDPKALSESSKIGEDYGYSEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G++GA L + LV++
Sbjct: 100 GCPSDRVREGNFGACLMKTPERVAELVFA 128
>gi|419958727|ref|ZP_14474788.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
GS1]
gi|388606395|gb|EIM35604.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp. cloacae
GS1]
Length = 331
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEERGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + +
Sbjct: 99 GCPSDRVQNGMFGACLMGNAHLVADCI 125
>gi|429101989|ref|ZP_19163963.1| tRNA dihydrouridine synthase A [Cronobacter turicensis 564]
gi|426288638|emb|CCJ90076.1| tRNA dihydrouridine synthase A [Cronobacter turicensis 564]
Length = 331
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY ++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 54 KGDYLAYSDEEHPVALQLG---------------GSDPAALAHCAKLAEARGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 99 GCPSDRVQNGRFGACLMGEAQLVADCV 125
>gi|421859860|ref|ZP_16292050.1| tRNA-dihydrouridine synthase [Paenibacillus popilliae ATCC 14706]
gi|410830621|dbj|GAC42487.1| tRNA-dihydrouridine synthase [Paenibacillus popilliae ATCC 14706]
Length = 333
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 118 SLMFCGNDSKNLTEAAKLA--EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
SL G D K+L EAAK+ E + D IDIN+GCP + GA W L N +Y
Sbjct: 72 SLQIFGGDRKSLVEAAKIVDKESNADIIDINMGCPVPKVTKCDAGAR----WLLDPNKIY 127
Query: 176 SPNMVHFVI 184
MV V+
Sbjct: 128 --EMVSAVV 134
>gi|381406043|ref|ZP_09930727.1| tRNA-dihydrouridine synthase A [Pantoea sp. Sc1]
gi|380739242|gb|EIC00306.1| tRNA-dihydrouridine synthase A [Pantoea sp. Sc1]
Length = 330
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 16/89 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY + P+ +LG G+D L + AKLAE D I++N+
Sbjct: 49 KGDYLAYSDAEHPVALQLG---------------GSDPAALAQCAKLAEQRGYDEINLNV 93
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
GCP + G +GA L + L+ + V +
Sbjct: 94 GCPSDRVQNGRFGACLMAEATLVADAVKA 122
>gi|118590253|ref|ZP_01547656.1| tRNA-dihydrouridine synthase A [Stappia aggregata IAM 12614]
gi|118437225|gb|EAV43863.1| tRNA-dihydrouridine synthase A [Stappia aggregata IAM 12614]
Length = 351
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 62 FMGPLFIAEP-------HCDGIDINIGCPQMV-AKRGHYGAYLQDDWPLLTELGFKTRSH 113
F+ P F A P HC + ++ + GA + D L LGF H
Sbjct: 22 FVKPRFAAAPMMEWTDRHCRAFHRQLTRHALLYTEMVTTGAVIHGDREYL--LGFSDIEH 79
Query: 114 MCGHSLMFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTN 172
L G+D +++ EAA++ AE D ++IN+GCP + G +GA L ++ L+
Sbjct: 80 PVACQL--GGSDPQDMAEAARIVAEFGYDEVNINVGCPSDRVQSGRFGACLMEEPALVAA 137
Query: 173 LVYS 176
V +
Sbjct: 138 CVEA 141
>gi|398397567|ref|XP_003852241.1| hypothetical protein MYCGRDRAFT_41619 [Zymoseptoria tritici IPO323]
gi|339472122|gb|EGP87217.1| hypothetical protein MYCGRDRAFT_41619 [Zymoseptoria tritici IPO323]
Length = 438
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%)
Query: 131 EAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL 163
EAAKL PH GID+N GCP+ + G GA L
Sbjct: 120 EAAKLIAPHVAGIDVNAGCPKPFSTSGGMGAAL 152
>gi|374291353|ref|YP_005038388.1| tRNA-dihydrouridine synthase A [Azospirillum lipoferum 4B]
gi|357423292|emb|CBS86142.1| tRNA-dihydrouridine synthase A [Azospirillum lipoferum 4B]
Length = 335
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 93 GAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQ 151
GA L D L LGF H +L G+D +L A++AE D +++N+GCP
Sbjct: 42 GAVLHGDRERL--LGFDAAEHPV--ALQLGGSDPADLAACARIAEEWGYDEVNLNVGCPS 97
Query: 152 MVAKRGHYGAYLQDDWPLLTNLV 174
+ G +GA L + L+ LV
Sbjct: 98 DRVQSGRFGACLMAEPDLVARLV 120
>gi|399060981|ref|ZP_10745870.1| putative TIM-barrel protein, nifR3 family [Novosphingobium sp.
AP12]
gi|398036413|gb|EJL29624.1| putative TIM-barrel protein, nifR3 family [Novosphingobium sp.
AP12]
Length = 344
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
S+ G + + + EAAKL E I DIN+GCP G G+ L PL T L+ +
Sbjct: 80 SMQLVGCEPEQMAEAAKLVEDRGAAIIDINMGCPVRKVVNGDAGSALMRQIPLATKLIEA 139
>gi|423142707|ref|ZP_17130345.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
gi|379049298|gb|EHY67193.1| tRNA dihydrouridine synthase A [Salmonella enterica subsp. houtenae
str. ATCC BAA-1581]
Length = 339
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 62 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 106
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + +
Sbjct: 107 GCPSDRVQNGMFGACLMGNAQLVADCI 133
>gi|367019150|ref|XP_003658860.1| hypothetical protein MYCTH_2295183 [Myceliophthora thermophila ATCC
42464]
gi|347006127|gb|AEO53615.1| hypothetical protein MYCTH_2295183 [Myceliophthora thermophila ATCC
42464]
Length = 357
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F N + L A+ L P +G+D+N GCPQ A GA L + L+ ++V
Sbjct: 31 VQFGANSPQELARASTLVAPFSNGVDLNCGCPQSWACAETLGAALMEKRELVRDMV 86
>gi|218515463|ref|ZP_03512303.1| tRNA-dihydrouridine synthase A [Rhizobium etli 8C-3]
Length = 156
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 111 RSHMCGH-------SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAY 162
R + GH +L G+D L EA ++AEP+ D I++N+GCP + G +GA
Sbjct: 37 RERLLGHDAAEHPLALQLGGSDPVKLAEAVRIAEPYGYDEINLNVGCPSDRVQSGTFGAC 96
Query: 163 L 163
L
Sbjct: 97 L 97
>gi|296411986|ref|XP_002835709.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629498|emb|CAZ79866.1| unnamed protein product [Tuber melanosporum]
Length = 459
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
F + S + + AA+L +P+ DG+D+N GCPQ A + G L L+ +V +
Sbjct: 92 FGAHSSIDFSRAAELVKPYTDGVDLNCGCPQSWAIQEGIGCRLMQQPQLVKEMVRA 147
>gi|288957792|ref|YP_003448133.1| tRNA-dihydrouridine synthase A [Azospirillum sp. B510]
gi|288910100|dbj|BAI71589.1| tRNA-dihydrouridine synthase A [Azospirillum sp. B510]
Length = 335
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 93 GAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQ 151
GA L D L LGF H +L G+D +L A++AE D +++N+GCP
Sbjct: 40 GAVLHGDRERL--LGFDAAEHPV--ALQLGGSDPADLAACARIAEEWGYDEVNLNVGCPS 95
Query: 152 MVAKRGHYGAYLQDDWPLLTNLV 174
+ G +GA L + L+ LV
Sbjct: 96 DRVQSGRFGACLMAEPDLVARLV 118
>gi|149913943|ref|ZP_01902475.1| tRNA-dihydrouridine synthase A [Roseobacter sp. AzwK-3b]
gi|149812227|gb|EDM72058.1| tRNA-dihydrouridine synthase A [Roseobacter sp. AzwK-3b]
Length = 337
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 118 SLMFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTN 172
+L G+D + L +AA++ AE D I++N+GCP + G +GA L D L++
Sbjct: 67 ALQLGGSDPQELAQAARMGAEAGYDEINLNVGCPSDRVQSGTFGAVLMKDPGLVSE 122
>gi|424585279|ref|ZP_18024876.1| tRNA dihydrouridine synthase, partial [Vibrio cholerae CP1030(3)]
gi|395978398|gb|EJH87785.1| tRNA dihydrouridine synthase, partial [Vibrio cholerae CP1030(3)]
Length = 99
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 16/80 (20%)
Query: 85 MVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGI 143
++ RG + AY Q++ P+ +L F G++ K+L AKLA+ D I
Sbjct: 32 IIHGRGDFLAYNQEEHPV---------------ALQFGGSNPKDLAHCAKLAQERGYDEI 76
Query: 144 DINIGCPQMVAKRGHYGAYL 163
++N+GCP + G +GA L
Sbjct: 77 NLNVGCPSDRVQNGRFGACL 96
>gi|366158984|ref|ZP_09458846.1| tRNA-dihydrouridine synthase A [Escherichia sp. TW09308]
gi|432374629|ref|ZP_19617655.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE11]
gi|430893024|gb|ELC15372.1| tRNA-dihydrouridine synthase A [Escherichia coli KTE11]
Length = 331
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLA+ D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAQARGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 99 GCPSDRVQNGMFGACLMGNAQLVADCV 125
>gi|334123884|ref|ZP_08497898.1| tRNA dihydrouridine synthase A [Enterobacter hormaechei ATCC 49162]
gi|333389862|gb|EGK61018.1| tRNA dihydrouridine synthase A [Enterobacter hormaechei ATCC 49162]
Length = 331
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEERGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + +
Sbjct: 99 GCPSDRVQNGMFGACLMGNAHLVADCI 125
>gi|157148055|ref|YP_001455374.1| tRNA-dihydrouridine synthase A [Citrobacter koseri ATCC BAA-895]
gi|157085260|gb|ABV14938.1| hypothetical protein CKO_03862 [Citrobacter koseri ATCC BAA-895]
Length = 345
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLA+ D I++N+
Sbjct: 68 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAQARGYDEINLNV 112
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 113 GCPSDRVQNGMFGACLMGNAQLVADCV 139
>gi|338973987|ref|ZP_08629349.1| tRNA dihydrouridine synthase A [Bradyrhizobiaceae bacterium SG-6C]
gi|338232714|gb|EGP07842.1| tRNA dihydrouridine synthase A [Bradyrhizobiaceae bacterium SG-6C]
Length = 330
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 93 GAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQ 151
GA + D L LGF H +L G++ ++L E+A++ E D I++N+GCP
Sbjct: 41 GAVIHGDRQRL--LGFDASEHPV--ALQLGGSNPRDLAESARIGEGFGYDEINLNVGCPS 96
Query: 152 MVAKRGHYGAYLQDDWPLLTNLVYS 176
K G +GA L + L+ + V +
Sbjct: 97 DRVKDGRFGACLMAEPRLVADCVAA 121
>gi|326387744|ref|ZP_08209350.1| dihydrouridine synthase TIM-barrel protein nifR3 [Novosphingobium
nitrogenifigens DSM 19370]
gi|326207790|gb|EGD58601.1| dihydrouridine synthase TIM-barrel protein nifR3 [Novosphingobium
nitrogenifigens DSM 19370]
Length = 342
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
S+ G + + + EAAKL+E I DIN+GCP G G+ L D PL L+ +
Sbjct: 80 SMQLVGCEPEQMGEAAKLSEDRGAAIIDINMGCPVRKVVNGDAGSALMRDIPLAARLIEA 139
>gi|123469809|ref|XP_001318114.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121900865|gb|EAY05891.1| hypothetical protein TVAG_353310 [Trichomonas vaginalis G3]
Length = 321
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIG 148
R Y ++D PL+ ++ G+ +L AK IDIN+G
Sbjct: 57 RQQQIEYSEEDRPLVIQIS---------------GSIDVDLLTTAKSMSEFGVPIDINLG 101
Query: 149 CPQMVAKRGHYGAYLQDDWPLLTNLV 174
C Q VAKRG YG ++ D N+V
Sbjct: 102 CCQKVAKRGEYGYFMVDSEQKRQNVV 127
>gi|254488703|ref|ZP_05101908.1| tRNA-dihydrouridine synthase A [Roseobacter sp. GAI101]
gi|214045572|gb|EEB86210.1| tRNA-dihydrouridine synthase A [Roseobacter sp. GAI101]
Length = 345
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 118 SLMFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+L G+D L EAA+L A+ D I++N+GCP + G +GA L + L+ V +
Sbjct: 76 ALQLGGSDPAELAEAARLGAQAGYDEINLNVGCPSDRVQSGSFGAILMEQPALVAKCVAA 135
>gi|451940639|ref|YP_007461277.1| tRNA-dihydrouridine synthase A [Bartonella australis Aust/NH1]
gi|451900026|gb|AGF74489.1| tRNA-dihydrouridine synthase A [Bartonella australis Aust/NH1]
Length = 326
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYL 163
L F + H +L G+D K L EAA++AE D +++N+GCP + G +GA L
Sbjct: 57 LAFSDKEHPI--ALQLGGSDEKKLAEAARIAEDFGYDEVNLNVGCPSDRVQAGTFGACL 113
>gi|437835925|ref|ZP_20845495.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
gi|435299608|gb|ELO75734.1| tRNA-dihydrouridine synthase A [Salmonella enterica subsp. enterica
serovar Enteritidis str. SARB17]
Length = 332
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHC--DGIDIN 146
+G Y AY +++ P+ +LG G+D L AKLAE C D I++N
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEA-CGYDEINLN 98
Query: 147 IGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+GCP + G +GA L + L+ + V
Sbjct: 99 VGCPSDRVQNGMFGACLMGNAQLVADCV 126
>gi|328773713|gb|EGF83750.1| hypothetical protein BATDEDRAFT_21188 [Batrachochytrium
dendrobatidis JAM81]
Length = 327
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F ++ +L +AA+L + +G+D+N GCPQ A G+YL + L+ ++V
Sbjct: 85 VQFAASNPTDLADAAELVARYTNGVDLNCGCPQKWAISEGIGSYLMEHPELVRDMV 140
>gi|125986951|ref|XP_001357238.1| GA10353 [Drosophila pseudoobscura pseudoobscura]
gi|54645569|gb|EAL34307.1| GA10353 [Drosophila pseudoobscura pseudoobscura]
Length = 398
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 160
F D+ +A+L P+ DGID+N GCPQ A YG
Sbjct: 84 FAAKDATEFVTSAQLIYPYVDGIDLNCGCPQSWAMSKGYG 123
Score = 36.6 bits (83), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYG 93
DD PL+ + + +K+ F+ + P+ DGID+N GCPQ A YG
Sbjct: 76 DDQPLIAQ------FAAKDATEFVTSAQLIYPYVDGIDLNCGCPQSWAMSKGYG 123
>gi|195156341|ref|XP_002019059.1| GL26162 [Drosophila persimilis]
gi|194115212|gb|EDW37255.1| GL26162 [Drosophila persimilis]
Length = 398
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 160
F D+ +A+L P+ DGID+N GCPQ A YG
Sbjct: 84 FAAKDATEFVTSAQLIYPYVDGIDLNCGCPQSWAMSKGYG 123
Score = 36.6 bits (83), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYG 93
DD PL+ + + +K+ F+ + P+ DGID+N GCPQ A YG
Sbjct: 76 DDQPLIAQ------FAAKDATEFVTSAQLIYPYVDGIDLNCGCPQSWAMSKGYG 123
>gi|395778159|ref|ZP_10458672.1| tRNA dihydrouridine synthase A [Bartonella elizabethae Re6043vi]
gi|423715583|ref|ZP_17689807.1| tRNA dihydrouridine synthase A [Bartonella elizabethae F9251]
gi|395418468|gb|EJF84795.1| tRNA dihydrouridine synthase A [Bartonella elizabethae Re6043vi]
gi|395429710|gb|EJF95771.1| tRNA dihydrouridine synthase A [Bartonella elizabethae F9251]
Length = 327
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 115 CGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 173
C +L G D K L EAA++AE + I++N+GCP + G +GA L D + N
Sbjct: 64 CPVALQLGGEDPKKLAEAARIAEDFGYNEINLNVGCPSNRVQAGVFGACLMLDPDTVANA 123
Query: 174 V 174
V
Sbjct: 124 V 124
>gi|157412352|ref|YP_001483218.1| tRNA-dihydrouridine synthase A [Prochlorococcus marinus str. MIT
9215]
gi|157386927|gb|ABV49632.1| tRNA-dihydrouridine synthase [Prochlorococcus marinus str. MIT
9215]
Length = 334
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQ 164
L F + H S+ F G+D K L EAA++A+ D I+ N+GCP G++GA L
Sbjct: 61 LDFNSEEHPI--SIQFGGDDPKILKEAARMAQDWGYDEINFNVGCPSPKVCSGNFGASLM 118
Query: 165 DD 166
D
Sbjct: 119 KD 120
>gi|340001601|ref|YP_004732485.1| hypothetical protein SBG_3688 [Salmonella bongori NCTC 12419]
gi|339514963|emb|CCC32734.1| conserved hypothetical protein [Salmonella bongori NCTC 12419]
Length = 381
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 104 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 148
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + +
Sbjct: 149 GCPSDRVQNGLFGACLMGNAQLVADSI 175
>gi|265984180|ref|ZP_06096915.1| nifR3 family TIM-barrel protein [Brucella sp. 83/13]
gi|264662772|gb|EEZ33033.1| nifR3 family TIM-barrel protein [Brucella sp. 83/13]
Length = 332
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 117 HSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
H + G +++ + EAAK+AE D IDIN+GCP G+ G+ L+ NL +
Sbjct: 73 HVVQLAGREARWMGEAAKIAEGEGADIIDINMGCPAKKVTGGYSGS------ALMRNLDH 126
Query: 176 SPNMVHFVIA 185
+ +V +A
Sbjct: 127 AMTLVEATVA 136
>gi|326435349|gb|EGD80919.1| DUS4L protein [Salpingoeca sp. ATCC 50818]
Length = 558
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
F ++++ AA L P+ D ID+N GCPQ A + G++L L+ ++V
Sbjct: 85 FAAANARDFAHAAALMAPYADAIDLNCGCPQKWAMQDGLGSHLVSKPELVADMV 138
>gi|306838176|ref|ZP_07471032.1| putative TIM-barrel protein, nifR3 family [Brucella sp. NF 2653]
gi|306406766|gb|EFM62989.1| putative TIM-barrel protein, nifR3 family [Brucella sp. NF 2653]
Length = 333
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 117 HSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
H + G +++ + EAAK+AE D IDIN+GCP G+ G+ L+ NL +
Sbjct: 74 HVVQLAGREARWMGEAAKIAEGEGADIIDINMGCPAKKVTGGYSGS------ALMRNLDH 127
Query: 176 SPNMVHFVIA 185
+ +V +A
Sbjct: 128 AMTLVEATVA 137
>gi|86750510|ref|YP_487006.1| tRNA-dihydrouridine synthase A [Rhodopseudomonas palustris HaA2]
gi|86573538|gb|ABD08095.1| TIM-barrel protein, yjbN family [Rhodopseudomonas palustris HaA2]
Length = 332
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 93 GAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQ 151
GA + D L LGF H +L G+D L AAK+ E D I++N+GCP
Sbjct: 45 GAVIHGDRQRL--LGFDASEHPV--ALQLGGSDPAALATAAKIGEDFGYDEINLNVGCPS 100
Query: 152 MVAKRGHYGAYLQDDWPLLTNLVYS 176
K G +GA L + L+ + V +
Sbjct: 101 DRVKEGRFGACLMAEPELVADGVAA 125
>gi|306841846|ref|ZP_07474528.1| putative TIM-barrel protein, nifR3 family [Brucella sp. BO2]
gi|306288073|gb|EFM59470.1| putative TIM-barrel protein, nifR3 family [Brucella sp. BO2]
Length = 320
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 117 HSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
H + G +++ + EAAK+AE D IDIN+GCP G+ G+ L+ NL +
Sbjct: 61 HVVQLAGREARWMGEAAKIAEGEGADIIDINMGCPAKKVTGGYSGS------ALMRNLDH 114
Query: 176 SPNMVHFVIA 185
+ +V +A
Sbjct: 115 AMTLVEATVA 124
>gi|261250374|ref|ZP_05942949.1| tRNA dihydrouridine synthase A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|417953731|ref|ZP_12596774.1| tRNA dihydrouridine synthase A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|260938943|gb|EEX94930.1| tRNA dihydrouridine synthase A [Vibrio orientalis CIP 102891 = ATCC
33934]
gi|342816847|gb|EGU51740.1| tRNA dihydrouridine synthase A [Vibrio orientalis CIP 102891 = ATCC
33934]
Length = 333
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINI 147
+G + AY Q++ P+ +LG G++ K+L AKLA E D I++N+
Sbjct: 54 KGDFLAYNQEEHPVALQLG---------------GSNPKDLATCAKLAAERGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 99 GCPSDRVQNGRFGACLMGEPQLVADCV 125
>gi|293394136|ref|ZP_06638436.1| tRNA-dihydrouridine synthase A [Serratia odorifera DSM 4582]
gi|291423114|gb|EFE96343.1| tRNA-dihydrouridine synthase A [Serratia odorifera DSM 4582]
Length = 349
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 85 MVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGI 143
+V +G Y AY +++ P+ +LG G+D L AKLAE D I
Sbjct: 64 IVHGKGDYLAYSEEEHPIALQLG---------------GSDPAALAHCAKLAEQRGYDEI 108
Query: 144 DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
++N+GCP + G +GA L L+ + + +
Sbjct: 109 NLNVGCPSDRVQNGMFGACLMGQATLVADCIKA 141
>gi|392977169|ref|YP_006475757.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392323102|gb|AFM58055.1| tRNA-dihydrouridine synthase A [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 331
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAHCAKLAEARGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + +
Sbjct: 99 GCPSDRVQNGMFGACLMGNAQLVADCI 125
>gi|303256981|ref|ZP_07342995.1| tRNA-dihydrouridine synthase A [Burkholderiales bacterium 1_1_47]
gi|330999169|ref|ZP_08322888.1| tRNA dihydrouridine synthase A [Parasutterella excrementihominis
YIT 11859]
gi|302860472|gb|EFL83549.1| tRNA-dihydrouridine synthase A [Burkholderiales bacterium 1_1_47]
gi|329575369|gb|EGG56913.1| tRNA dihydrouridine synthase A [Parasutterella excrementihominis
YIT 11859]
Length = 343
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 93 GAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQ 151
GA + D P L F H +L G+D K+L AKLA+ D +++N GCP
Sbjct: 47 GALVHGDVP--HHLDFSEAEHRV--ALQLGGSDPKDLAHGAKLAQQWGYDEVNLNCGCPS 102
Query: 152 MVAKRGHYGAYLQDDWPLLTNLVYS-PNMVHFVIAEPHCDGNDIN 195
++G +GA L + L+ + V + + H + H G D N
Sbjct: 103 ERVQKGSFGACLMAEPGLVADCVKAMQDATHLPVTIKHRVGIDAN 147
>gi|254526125|ref|ZP_05138177.1| tRNA-dihydrouridine synthase A [Prochlorococcus marinus str. MIT
9202]
gi|221537549|gb|EEE40002.1| tRNA-dihydrouridine synthase A [Prochlorococcus marinus str. MIT
9202]
Length = 334
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQ 164
L F + H S+ F G+D K L EAA++A+ D I+ N+GCP G++GA L
Sbjct: 61 LDFNSEEHPI--SIQFGGDDPKILKEAARMAQDWGYDEINFNVGCPSPKVCSGNFGASLM 118
Query: 165 DD 166
D
Sbjct: 119 KD 120
>gi|406678525|ref|ZP_11085700.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AMC35]
gi|404621638|gb|EKB18504.1| tRNA-dihydrouridine synthase A [Aeromonas veronii AMC35]
Length = 328
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 164
LG+ + H SL G++ +L AKLAE D ++IN+GCP + G +GA L
Sbjct: 50 LGYSEQEHPI--SLQLGGSNPADLARCAKLAEERGYDEVNINVGCPSDRVQNGRFGACLM 107
Query: 165 DDWPLLTNLV 174
+ L+ + V
Sbjct: 108 GEPALVADCV 117
>gi|124506924|ref|XP_001352059.1| dihydrouridine synthase, putative [Plasmodium falciparum 3D7]
gi|23505088|emb|CAD51870.1| dihydrouridine synthase, putative [Plasmodium falciparum 3D7]
Length = 577
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQM-VAKRGHYGAYL 163
LGF H L C D +++EAA L E D I+IN+GCP VA +G +GA L
Sbjct: 247 LGFDNNEHPIVCQLGGC--DMNSMSEAAILVEQAGYDEININVGCPSTKVANKGAFGASL 304
Query: 164 QDDWPLLTNLVY 175
+ + N+VY
Sbjct: 305 MKNPEQVRNIVY 316
>gi|411012138|ref|ZP_11388467.1| tRNA-dihydrouridine synthase A [Aeromonas aquariorum AAK1]
Length = 318
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 106 LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQ 164
LG+ + H SL G++ +L AKLAE D ++IN+GCP + G +GA L
Sbjct: 40 LGYSEQEHPI--SLQLGGSNPTDLARCAKLAEERGYDEVNINVGCPSDRVQNGRFGACLM 97
Query: 165 DDWPLLTNLV 174
+ L+ + V
Sbjct: 98 GEPALVADCV 107
>gi|347538423|ref|YP_004845847.1| tRNA-dihydrouridine synthase A [Pseudogulbenkiania sp. NH8B]
gi|345641600|dbj|BAK75433.1| tRNA-dihydrouridine synthase A [Pseudogulbenkiania sp. NH8B]
Length = 316
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 102 LLTELGFKTRSHMCGH--SLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGH 158
L ++ R H C H +L G++ L A+LAE D +++N+GCP ++G
Sbjct: 36 LYGDVARHLRYHECEHPVALQLGGSEPDELARCARLAEEWGYDEVNLNVGCPSERVQKGA 95
Query: 159 YGAYLQDDWPLLTNLVYS 176
+GA L + L+ + V S
Sbjct: 96 FGACLMAEPQLVADCVKS 113
>gi|421593804|ref|ZP_16038317.1| tRNA-dihydrouridine synthase A [Rhizobium sp. Pop5]
gi|403700176|gb|EJZ17420.1| tRNA-dihydrouridine synthase A [Rhizobium sp. Pop5]
Length = 333
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 111 RSHMCGH-------SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAY 162
R + GH +L G+D L EA +LA+P+ D +++N+GCP + G +GA
Sbjct: 49 RERLLGHDPAEHPLALQLGGSDPVKLAEAVRLAQPYGYDEVNLNVGCPSDRVQSGTFGAC 108
Query: 163 L 163
L
Sbjct: 109 L 109
>gi|219565286|dbj|BAH04179.1| b-type dihydroorotate dehydrogenase [Bifidobacterium bifidum]
Length = 315
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 95 YLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQM 152
YL D+ P L +LG +++ GHS D + AKLA+ D ++IN+ CP +
Sbjct: 93 YLVDELPKLKDLGATVITNVAGHS------DDEYAEVVAKLADSRADMLEINVSCPNV 144
>gi|149907717|ref|ZP_01896464.1| TIM-barrel protein, yjbN family [Moritella sp. PE36]
gi|149809387|gb|EDM69316.1| TIM-barrel protein, yjbN family [Moritella sp. PE36]
Length = 330
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
RG Y AY +++ P+ +LG G++ +L ++AKLA+ D I++N+
Sbjct: 55 RGDYLAYNKEEHPVSLQLG---------------GSNPIDLAQSAKLAQERGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQSGKFGACLMAEPTLVADCV 126
>gi|393757554|ref|ZP_10346378.1| urate catabolism protein [Alcaligenes faecalis subsp. faecalis NCIB
8687]
gi|393165246|gb|EJC65295.1| urate catabolism protein [Alcaligenes faecalis subsp. faecalis NCIB
8687]
Length = 310
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 151 QMVAKRGHY---GAYLQDDWPLLTNLVYSPNMVHFVIAEPHC-DGNDINIGCPQMVAKRG 206
++VA+ G + Y DD P T + S N V + P+ D ND+ PQ
Sbjct: 174 RLVAEEGQFLYSSDYYGDDLPFWTEVQLSDNTVKPQLIVPYTLDSNDMRFAAPQGFNTGD 233
Query: 207 HYGAYLQDDWPLLTELGKMA 226
H+ +YL+D + +L E G+ A
Sbjct: 234 HFFSYLKDAFDVLYEEGEDA 253
>gi|261314157|ref|ZP_05953354.1| nifR3 family TIM-barrel protein [Brucella pinnipedialis M163/99/10]
gi|261317754|ref|ZP_05956951.1| nifR3 family TIM-barrel protein [Brucella pinnipedialis B2/94]
gi|261296977|gb|EEY00474.1| nifR3 family TIM-barrel protein [Brucella pinnipedialis B2/94]
gi|261303183|gb|EEY06680.1| nifR3 family TIM-barrel protein [Brucella pinnipedialis M163/99/10]
Length = 332
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 117 HSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
H + G +++ + EAAK+AE D IDIN+GCP G+ G+ L+ NL +
Sbjct: 73 HVVQLAGREARWMGEAAKIAEGEGADIIDINMGCPAKKVTGGYSGS------ALMRNLDH 126
Query: 176 SPNMVHFVIA 185
+ +V +A
Sbjct: 127 AMTLVEATVA 136
>gi|148560180|ref|YP_001259040.1| nitrogen regulation protein Nifr3 [Brucella ovis ATCC 25840]
gi|256369546|ref|YP_003107056.1| nitrogen regulation protein Nifr3 [Brucella microti CCM 4915]
gi|261325210|ref|ZP_05964407.1| nifR3 family TIM-barrel protein [Brucella neotomae 5K33]
gi|265988785|ref|ZP_06101342.1| nifR3 family TIM-barrel protein [Brucella pinnipedialis M292/94/1]
gi|340790738|ref|YP_004756203.1| nitrogen regulation protein NifR3 [Brucella pinnipedialis B2/94]
gi|148371437|gb|ABQ61416.1| nitrogen regulation protein Nifr3 [Brucella ovis ATCC 25840]
gi|255999708|gb|ACU48107.1| nitrogen regulation protein Nifr3 [Brucella microti CCM 4915]
gi|261301190|gb|EEY04687.1| nifR3 family TIM-barrel protein [Brucella neotomae 5K33]
gi|264660982|gb|EEZ31243.1| nifR3 family TIM-barrel protein [Brucella pinnipedialis M292/94/1]
gi|340559197|gb|AEK54435.1| nitrogen regulation protein NifR3 [Brucella pinnipedialis B2/94]
Length = 333
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 117 HSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
H + G +++ + EAAK+AE D IDIN+GCP G+ G+ L+ NL +
Sbjct: 74 HVVQLAGREARWMGEAAKIAEGEGADIIDINMGCPAKKVTGGYSGS------ALMRNLDH 127
Query: 176 SPNMVHFVIA 185
+ +V +A
Sbjct: 128 AMTLVEATVA 137
>gi|376273151|ref|YP_005151729.1| nifR3 family TIM-barrel protein [Brucella abortus A13334]
gi|363400757|gb|AEW17727.1| nifR3 family TIM-barrel protein [Brucella abortus A13334]
Length = 319
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 117 HSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
H + G +++ + EAAK+AE D IDIN+GCP G+ G+ L+ NL +
Sbjct: 60 HVVQLAGREARWMGEAAKIAEGEGADIIDINMGCPAKKVTGGYSGS------ALMRNLDH 113
Query: 176 SPNMVHFVIA 185
+ +V +A
Sbjct: 114 AMTLVEATVA 123
>gi|306843984|ref|ZP_07476579.1| putative TIM-barrel protein, nifR3 family [Brucella inopinata BO1]
gi|306275739|gb|EFM57463.1| putative TIM-barrel protein, nifR3 family [Brucella inopinata BO1]
Length = 333
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 117 HSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
H + G +++ + EAAK+AE D IDIN+GCP G+ G+ L+ NL +
Sbjct: 74 HVVQLAGREARWMGEAAKIAEGEGADIIDINMGCPAKKVTGGYSGS------ALMRNLDH 127
Query: 176 SPNMVHFVIA 185
+ +V +A
Sbjct: 128 AMTLVEATVA 137
>gi|194759368|ref|XP_001961921.1| GF14697 [Drosophila ananassae]
gi|190615618|gb|EDV31142.1| GF14697 [Drosophila ananassae]
Length = 395
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG 160
F D+ +A+L P+ DGID+N GCPQ A YG
Sbjct: 83 FAAKDATEFVTSAQLIYPYVDGIDLNCGCPQSWAMAKGYG 122
>gi|149194756|ref|ZP_01871851.1| tRNA-dihydrouridine synthase B [Caminibacter mediatlanticus TB-2]
gi|149135179|gb|EDM23660.1| tRNA-dihydrouridine synthase B [Caminibacter mediatlanticus TB-2]
Length = 311
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 8/66 (12%)
Query: 109 KTRSHMCGHS------LMFCGNDSKNLTEAAKLAE--PHCDGIDINIGCPQMVAKRGHYG 160
KT+ M S + N+ +N +A ++ P DGIDIN+GCP A+R YG
Sbjct: 54 KTKKMMQKSSKETPYFIQIAANNVENAIKAVEIINEIPWIDGIDINLGCPVNKARRSGYG 113
Query: 161 AYLQDD 166
L D
Sbjct: 114 GVLLKD 119
>gi|62290033|ref|YP_221826.1| NifR3, nitrogen regulation protein Nifr3 [Brucella abortus bv. 1
str. 9-941]
gi|82699960|ref|YP_414534.1| hypothetical protein BAB1_1142 [Brucella melitensis biovar Abortus
2308]
gi|189024273|ref|YP_001935041.1| nitrogen regulation protein NifR3 [Brucella abortus S19]
gi|237815542|ref|ZP_04594539.1| TIM-barrel protein, nifR3 family [Brucella abortus str. 2308 A]
gi|260883874|ref|ZP_05895488.1| nifR3 family TIM-barrel protein [Brucella abortus bv. 9 str. C68]
gi|62196165|gb|AAX74465.1| NifR3, nitrogen regulation protein Nifr3 [Brucella abortus bv. 1
str. 9-941]
gi|82616061|emb|CAJ11098.1| Protein of unknown function UPF0034:FMN/related compound-binding
core:Putative TIM-barrel protein nifR3 family [Brucella
melitensis biovar Abortus 2308]
gi|189019845|gb|ACD72567.1| nitrogen regulation protein NifR3 [Brucella abortus S19]
gi|237788840|gb|EEP63051.1| TIM-barrel protein, nifR3 family [Brucella abortus str. 2308 A]
gi|260873402|gb|EEX80471.1| nifR3 family TIM-barrel protein [Brucella abortus bv. 9 str. C68]
Length = 333
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 117 HSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
H + G +++ + EAAK+AE D IDIN+GCP G+ G+ L+ NL +
Sbjct: 74 HVVQLAGREARWMGEAAKIAEGEGADIIDINMGCPAKKVTGGYSGS------ALMRNLDH 127
Query: 176 SPNMVHFVIA 185
+ +V +A
Sbjct: 128 AMTLVEATVA 137
>gi|311064331|ref|YP_003971056.1| dihydroorotate dehydrogenase, catalytic subunit pyrD
[Bifidobacterium bifidum PRL2010]
gi|310866650|gb|ADP36019.1| pyrD Dihydroorotate dehydrogenase, catalytic subunit
[Bifidobacterium bifidum PRL2010]
Length = 317
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 95 YLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQM 152
YL D+ P L +LG +++ GHS D + AKLA+ D ++IN+ CP +
Sbjct: 95 YLVDELPKLKDLGATVITNVAGHS------DDEYAEVVAKLADSRADMLEINVSCPNV 146
>gi|269137592|ref|YP_003294292.1| tRNA-dihydrouridine synthase [Edwardsiella tarda EIB202]
gi|387866350|ref|YP_005697819.1| tRNA dihydrouridine synthase A [Edwardsiella tarda FL6-60]
gi|267983252|gb|ACY83081.1| tRNA-dihydrouridine synthase [Edwardsiella tarda EIB202]
gi|304557663|gb|ADM40327.1| tRNA dihydrouridine synthase A [Edwardsiella tarda FL6-60]
Length = 352
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 33/135 (24%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ PL +LG G++ +L A LAE D I++N+
Sbjct: 74 KGDYLAYSEEEHPLALQLG---------------GSNPADLARCAHLAEARGYDEINLNV 118
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGH 207
GCP + G +GA L + L+ + V + V + P V R
Sbjct: 119 GCPSDRVQNGRFGACLMGEAQLVADCVKAMRDV---------------VSIPVTVKTR-- 161
Query: 208 YGAYLQDDWPLLTEL 222
G QD +P L +
Sbjct: 162 IGIDAQDSYPFLCDF 176
>gi|261752425|ref|ZP_05996134.1| nifR3 family TIM-barrel protein [Brucella suis bv. 5 str. 513]
gi|261742178|gb|EEY30104.1| nifR3 family TIM-barrel protein [Brucella suis bv. 5 str. 513]
Length = 332
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 117 HSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
H + G +++ + EAAK+AE D IDIN+GCP G+ G+ L+ NL +
Sbjct: 73 HVVQLAGREARWMGEAAKIAEGEGADIIDINMGCPAKKVTGGYSGS------ALMRNLDH 126
Query: 176 SPNMVHFVIA 185
+ +V +A
Sbjct: 127 AMTLVEATVA 136
>gi|260546585|ref|ZP_05822324.1| nitrogen regulation protein NifR3 [Brucella abortus NCTC 8038]
gi|260754862|ref|ZP_05867210.1| nifR3 family TIM-barrel protein [Brucella abortus bv. 6 str. 870]
gi|260758079|ref|ZP_05870427.1| nifR3 family TIM-barrel protein [Brucella abortus bv. 4 str. 292]
gi|260761903|ref|ZP_05874246.1| nifR3 family TIM-barrel protein [Brucella abortus bv. 2 str.
86/8/59]
gi|261214113|ref|ZP_05928394.1| nifR3 family TIM-barrel protein [Brucella abortus bv. 3 str. Tulya]
gi|297248433|ref|ZP_06932151.1| tRNA-dihydrouridine synthase B [Brucella abortus bv. 5 str. B3196]
gi|423166778|ref|ZP_17153481.1| hypothetical protein M17_00468 [Brucella abortus bv. 1 str. NI435a]
gi|423170848|ref|ZP_17157523.1| hypothetical protein M19_01381 [Brucella abortus bv. 1 str. NI474]
gi|423173070|ref|ZP_17159741.1| hypothetical protein M1A_00468 [Brucella abortus bv. 1 str. NI486]
gi|423178237|ref|ZP_17164881.1| hypothetical protein M1E_02477 [Brucella abortus bv. 1 str. NI488]
gi|423180278|ref|ZP_17166919.1| hypothetical protein M1G_01378 [Brucella abortus bv. 1 str. NI010]
gi|423183410|ref|ZP_17170047.1| hypothetical protein M1I_01379 [Brucella abortus bv. 1 str. NI016]
gi|423185650|ref|ZP_17172264.1| hypothetical protein M1K_00468 [Brucella abortus bv. 1 str. NI021]
gi|423188786|ref|ZP_17175396.1| hypothetical protein M1M_00468 [Brucella abortus bv. 1 str. NI259]
gi|260095635|gb|EEW79512.1| nitrogen regulation protein NifR3 [Brucella abortus NCTC 8038]
gi|260668397|gb|EEX55337.1| nifR3 family TIM-barrel protein [Brucella abortus bv. 4 str. 292]
gi|260672335|gb|EEX59156.1| nifR3 family TIM-barrel protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260674970|gb|EEX61791.1| nifR3 family TIM-barrel protein [Brucella abortus bv. 6 str. 870]
gi|260915720|gb|EEX82581.1| nifR3 family TIM-barrel protein [Brucella abortus bv. 3 str. Tulya]
gi|297175602|gb|EFH34949.1| tRNA-dihydrouridine synthase B [Brucella abortus bv. 5 str. B3196]
gi|374539426|gb|EHR10930.1| hypothetical protein M19_01381 [Brucella abortus bv. 1 str. NI474]
gi|374543009|gb|EHR14493.1| hypothetical protein M17_00468 [Brucella abortus bv. 1 str. NI435a]
gi|374543625|gb|EHR15107.1| hypothetical protein M1A_00468 [Brucella abortus bv. 1 str. NI486]
gi|374545476|gb|EHR16937.1| hypothetical protein M1E_02477 [Brucella abortus bv. 1 str. NI488]
gi|374548842|gb|EHR20289.1| hypothetical protein M1G_01378 [Brucella abortus bv. 1 str. NI010]
gi|374549473|gb|EHR20916.1| hypothetical protein M1I_01379 [Brucella abortus bv. 1 str. NI016]
gi|374558444|gb|EHR29837.1| hypothetical protein M1M_00468 [Brucella abortus bv. 1 str. NI259]
gi|374559741|gb|EHR31126.1| hypothetical protein M1K_00468 [Brucella abortus bv. 1 str. NI021]
Length = 332
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 117 HSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175
H + G +++ + EAAK+AE D IDIN+GCP G+ G+ L+ NL +
Sbjct: 73 HVVQLAGREARWMGEAAKIAEGEGADIIDINMGCPAKKVTGGYSGS------ALMRNLDH 126
Query: 176 SPNMVHFVIA 185
+ +V +A
Sbjct: 127 AMTLVEATVA 136
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.142 0.480
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,239,869,108
Number of Sequences: 23463169
Number of extensions: 178039275
Number of successful extensions: 301231
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 802
Number of HSP's that attempted gapping in prelim test: 296573
Number of HSP's gapped (non-prelim): 5913
length of query: 240
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 102
effective length of database: 9,121,278,045
effective search space: 930370360590
effective search space used: 930370360590
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)