BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7344
(240 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P1R4|DUS1L_HUMAN tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo
sapiens GN=DUS1L PE=1 SV=1
Length = 473
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQD+W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G L
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPL 185
Query: 233 DNTGSW 238
SW
Sbjct: 186 SGAASW 191
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 6/77 (7%)
Query: 30 KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKR 89
K Y +D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKR
Sbjct: 62 KENLYCEVCPEDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKR 115
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYGA+LQD+W LL +
Sbjct: 116 GHYGAFLQDEWDLLQRM 132
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQD+W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQDEWDLLQRMIL 134
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 155 KRGHYGAYLQDDWPLLTNLVYSPNMVHF---VIAEPHCDGNDINIGCPQMVAKRGHYGAY 211
K Y +D PL+ + V ++A+ +CD D+N+GCPQM+AKRGHYGA+
Sbjct: 62 KENLYCEVCPEDRPLIVQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAF 121
Query: 212 LQDDWPLLTEL 222
LQD+W LL +
Sbjct: 122 LQDEWDLLQRM 132
>sp|Q8C2P3|DUS1L_MOUSE tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Mus
musculus GN=Dus1l PE=2 SV=1
Length = 475
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G +
Sbjct: 135 LAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPM 185
Query: 233 DNTGSW 238
T SW
Sbjct: 186 AGTASW 191
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 43/59 (72%), Gaps = 2/59 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
L+V F + + +F+ +A+ +CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +
Sbjct: 76 LIVQF--CANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRM 132
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 33/37 (89%)
Query: 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+CD ID+N+GCPQM+AKRGHYGA+LQ++W LL +++
Sbjct: 98 YCDAIDLNLGCPQMIAKRGHYGAFLQEEWDLLQRMIL 134
>sp|Q8K582|DUS1L_RAT tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus
norvegicus GN=Dus1l PE=2 SV=1
Length = 438
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 66/126 (52%), Gaps = 18/126 (14%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + +AA LA+ +CD ID+N+GCPQM+AKRG YGA+LQ++W LL ++
Sbjct: 78 VQFCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEEWDLLQRMIL--- 134
Query: 179 MVHFVIAEP-HCDGN-----DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGIL 232
+ H ++ P C D + QM+ K G LLT G+ G +
Sbjct: 135 LAHERLSVPVTCKIRVFPEIDKTVRYAQMLEKAG---------CQLLTVHGRTKEQKGPM 185
Query: 233 DNTGSW 238
T SW
Sbjct: 186 AGTASW 191
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 45/67 (67%), Gaps = 6/67 (8%)
Query: 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
+D PL+ + + + + +F+ +A+ +CD ID+N+GCPQM+AKRG YGA+LQ++
Sbjct: 72 EDRPLIVQ------FCANDPEVFVQAALLAQDYCDAIDLNLGCPQMIAKRGRYGAFLQEE 125
Query: 100 WPLLTEL 106
W LL +
Sbjct: 126 WDLLQRM 132
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 33/40 (82%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVV 50
+ +CD ID+N+GCPQM+AKRG YGA+LQ++W LL +++
Sbjct: 95 AQDYCDAIDLNLGCPQMIAKRGRYGAFLQEEWDLLQRMIL 134
>sp|Q9HGN6|DUS1_SCHPO tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dus1 PE=3 SV=1
Length = 399
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 46/56 (82%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ FCGND + + +AAK+A P+CD +D+N+GCPQ +AK+G YG++LQ++W L+ +++
Sbjct: 79 IQFCGNDPEIMLKAAKIAAPYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIESII 134
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 35/48 (72%)
Query: 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMC 115
IA P+CD +D+N+GCPQ +AK+G YG++LQ++W L+ + K + +
Sbjct: 95 IAAPYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIESIITKLHTELS 142
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 31/40 (77%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHF 52
P+CD +D+N+GCPQ +AK+G YG++LQ++W L+ ++
Sbjct: 98 PYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIESIITKL 137
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 31/39 (79%)
Query: 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 222
IA P+CD D+N+GCPQ +AK+G YG++LQ++W L+ +
Sbjct: 95 IAAPYCDAVDVNLGCPQGIAKKGKYGSFLQENWNLIESI 133
>sp|P53759|DUS1_YEAST tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DUS1 PE=1
SV=1
Length = 423
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178
+ FC ND + L AAKL E CD +D+N+GCPQ +AK+GHYG++L ++W L+ NL+ N
Sbjct: 91 VQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLI---N 147
Query: 179 MVHFVIAEP 187
+H + P
Sbjct: 148 TLHKNLKVP 156
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 10/77 (12%)
Query: 37 YLQDDWPLL------TELVVHFSWVSKNGPLFM-GPLFIAEPHCDGIDINIGCPQMVAKR 89
Y +D+W L LVV F N P ++ + E CD +D+N+GCPQ +AK+
Sbjct: 72 YREDNWSSLDGSSVDRPLVVQFC---ANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKK 128
Query: 90 GHYGAYLQDDWPLLTEL 106
GHYG++L ++W L+ L
Sbjct: 129 GHYGSFLMEEWDLIHNL 145
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 30/39 (76%)
Query: 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
E CD +D+N+GCPQ +AK+GHYG++L ++W L+ L+
Sbjct: 108 VEDKCDAVDLNLGCPQGIAKKGHYGSFLMEEWDLIHNLI 146
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 13/74 (17%)
Query: 162 YLQDDWPLLT-NLVYSPNMVHFVIAEPH------------CDGNDINIGCPQMVAKRGHY 208
Y +D+W L + V P +V F +P CD D+N+GCPQ +AK+GHY
Sbjct: 72 YREDNWSSLDGSSVDRPLVVQFCANDPEYLLAAAKLVEDKCDAVDLNLGCPQGIAKKGHY 131
Query: 209 GAYLQDDWPLLTEL 222
G++L ++W L+ L
Sbjct: 132 GSFLMEEWDLIHNL 145
>sp|O95620|DUS4L_HUMAN tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Homo
sapiens GN=DUS4L PE=2 SV=2
Length = 317
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA++ P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVQDMV 141
Score = 37.4 bits (85), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELG 107
L+V F+ + + L I P+ +GIDIN GCPQ A YGA L + L+ ++
Sbjct: 84 LIVQFA--ANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMV 141
Query: 108 FKTRSHM 114
+ R+ +
Sbjct: 142 KQVRNQV 148
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+ +GIDIN GCPQ A YGA L + L+ ++V
Sbjct: 105 PYANGIDINCGCPQRWAMAEGYGACLINKPELVQDMV 141
Score = 30.8 bits (68), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 164 QDDWPLLTNLVYSPNMVHFV-----IAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPL 218
Q D PL+ ++ N + I P+ +G DIN GCPQ A YGA L + L
Sbjct: 79 QGDCPLIVQ--FAANDARLLSDAARIVCPYANGIDINCGCPQRWAMAEGYGACLINKPEL 136
Query: 219 LTELGK 224
+ ++ K
Sbjct: 137 VQDMVK 142
>sp|Q32M08|DUS4L_MOUSE tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Mus
musculus GN=Dus4l PE=2 SV=1
Length = 324
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T C + F ND++ L++AA L P+ +GIDIN GCPQ A YGA L +
Sbjct: 75 FTTNQGDCPLIVQFAANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINKP 134
Query: 168 PLLTNLV 174
L+ ++V
Sbjct: 135 ELVHDMV 141
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 48 LVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELG 107
L+V F+ + + L + P+ +GIDIN GCPQ A YGA L + L+ ++
Sbjct: 84 LIVQFA--ANDARLLSDAALLVCPYANGIDINCGCPQRWAMADGYGACLINKPELVHDMV 141
Query: 108 FKTRSHM 114
+ R+ +
Sbjct: 142 RQVRNRV 148
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELV 49
P+ +GIDIN GCPQ A YGA L + L+ ++V
Sbjct: 105 PYANGIDINCGCPQRWAMADGYGACLINKPELVHDMV 141
>sp|P41504|DUS_RHILP Probable tRNA-dihydrouridine synthase OS=Rhizobium leguminosarum
bv. phaseoli GN=dus PE=3 SV=1
Length = 317
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 98 DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKR 156
+ W L GF+ H + G ++ + EAAK+A H D IDIN+GCP
Sbjct: 48 ESWSRLKAAGFRP------HMVQLAGREAHWMAEAAKIAADHGADIIDINMGCPAKKVIG 101
Query: 157 GHYGAYLQDD 166
G+ G+ L D
Sbjct: 102 GYSGSALMRD 111
>sp|O74553|DUS4_SCHPO tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dus4 PE=3 SV=1
Length = 326
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 108 FKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW 167
F T L F +D L +AA+L P+ DGI IN GCPQ A + G+ L D+
Sbjct: 67 FSTNDADASLILQFGVDDPVILEKAAQLVGPYVDGIGINCGCPQTWAIQEGIGSALLDEP 126
Query: 168 PLLTNLVYSPNMVHFVIAEPHCDGNDINIG 197
+ LV + V + E C I I
Sbjct: 127 EKVHKLVRA---VKSTLGESFCTEVKIRIA 153
>sp|Q9KUX9|DUSA_VIBCH tRNA-dihydrouridine synthase A OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=dusA PE=3
SV=1
Length = 327
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 16/93 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
RG + AY Q++ P+ +L F G++ K+L AKLA+ D I++N+
Sbjct: 47 RGDFLAYNQEEHPV---------------ALQFGGSNPKDLAHCAKLAQERGYDEINLNV 91
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
GCP + G +GA L + L+ V + V
Sbjct: 92 GCPSDRVQNGRFGACLMGEPDLVAECVAAMRAV 124
>sp|Q8FB30|DUSA_ECOL6 tRNA-dihydrouridine synthase A OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=dusA PE=3 SV=1
Length = 331
Score = 40.4 bits (93), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 54 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 98
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 99 GCPSDRVQNGMFGACLMGNAQLVADCV 125
>sp|P32695|DUSA_ECOLI tRNA-dihydrouridine synthase A OS=Escherichia coli (strain K12)
GN=dusA PE=3 SV=3
Length = 330
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 53 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 97
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 98 GCPSDRVQNGMFGACLMGNAQLVADCV 124
>sp|Q8X5V6|DUSA_ECO57 tRNA-dihydrouridine synthase A OS=Escherichia coli O157:H7 GN=dusA
PE=3 SV=2
Length = 330
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 53 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 97
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 98 GCPSDRVQNGMFGACLMGNAQLVADCV 124
>sp|Q7UBC5|DUSA_SHIFL tRNA-dihydrouridine synthase A OS=Shigella flexneri GN=dusA PE=3
SV=2
Length = 330
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L + AKLAE D I++N+
Sbjct: 53 KGDYLAYSEEEHPVALQLG---------------GSDPAALAQCAKLAEARGYDEINLNV 97
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 98 GCPSDRVQNGMFGACLMGNAQLVADCV 124
>sp|Q8Z1T1|DUSA_SALTI tRNA-dihydrouridine synthase A OS=Salmonella typhi GN=dusA PE=3
SV=1
Length = 332
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>sp|Q8ZKH4|DUSA_SALTY tRNA-dihydrouridine synthase A OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=dusA PE=3 SV=1
Length = 332
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G Y AY +++ P+ +LG G+D L AKLAE D I++N+
Sbjct: 55 KGDYLAYSEEEHPVALQLG---------------GSDPAQLAHCAKLAEARGYDEINLNV 99
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 100 GCPSDRVQNGMFGACLMGNAQLVADCV 126
>sp|Q8ZJ14|DUSA_YERPE tRNA-dihydrouridine synthase A OS=Yersinia pestis GN=dusA PE=3 SV=1
Length = 345
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 23/126 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+ Y AY + D P+ +LG G+D + L AKLAE + I++N+
Sbjct: 62 KADYLAYSEQDHPVALQLG---------------GSDPQALAHCAKLAEQRGYNEINLNV 106
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYS-------PNMVHFVIAEPHCDGNDINIGCPQ 200
GCP + G +GA L + L+ + + + P V I D + Q
Sbjct: 107 GCPSDRVQNGRFGACLMGEADLVADCIKAMRDAVAIPVTVKTRIGIDQLDSYEFLCEFVQ 166
Query: 201 MVAKRG 206
VA+RG
Sbjct: 167 TVAERG 172
>sp|Q87L85|DUSA_VIBPA tRNA-dihydrouridine synthase A OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=dusA PE=3 SV=1
Length = 326
Score = 38.5 bits (88), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGIDINI 147
+G + AY +++ PL +LG G++ ++L + AKLA+ D I++N+
Sbjct: 47 KGDFLAYNEEEHPLALQLG---------------GSNPEDLAKCAKLAQERGYDEINLNV 91
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ + V
Sbjct: 92 GCPSDRVQNGRFGACLMAEPQLVADCV 118
>sp|Q8EAJ0|DUSA_SHEON tRNA-dihydrouridine synthase A OS=Shewanella oneidensis (strain
MR-1) GN=dusA PE=3 SV=1
Length = 335
Score = 37.7 bits (86), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 16/87 (18%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINI 147
RG Y Y Q++ PL +LG G++ L AKLA E D +++N+
Sbjct: 56 RGDYLTYNQEEHPLALQLG---------------GSNPVELARCAKLAAERGYDEVNLNV 100
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLV 174
GCP + G +GA L + L+ V
Sbjct: 101 GCPSDRVQNGRFGACLMAEPELVAECV 127
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMG--PLFIAEPHCDGIDINIGCPQMVAK 88
RG Y Y Q++ PL +L + P+ + AE D +++N+GCP +
Sbjct: 56 RGDYLTYNQEEHPLALQL-------GGSNPVELARCAKLAAERGYDEVNLNVGCPSDRVQ 108
Query: 89 RGHYGAYLQDDWPLLTE 105
G +GA L + L+ E
Sbjct: 109 NGRFGACLMAEPELVAE 125
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 156 RGHYGAYLQDDWPLLTNLVYSPNMVHF-----VIAEPHCDGNDINIGCPQMVAKRGHYGA 210
RG Y Y Q++ PL L S N V + AE D ++N+GCP + G +GA
Sbjct: 56 RGDYLTYNQEEHPLALQLGGS-NPVELARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGA 114
Query: 211 YLQDDWPLLTE 221
L + L+ E
Sbjct: 115 CLMAEPELVAE 125
>sp|Q8CWK7|DUSA_VIBVU tRNA-dihydrouridine synthase A OS=Vibrio vulnificus (strain CMCP6)
GN=dusA PE=3 SV=2
Length = 326
Score = 37.4 bits (85), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 16/93 (17%)
Query: 89 RGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINI 147
+G + AY Q++ P+ +LG G++ ++L AKLA E D +++N+
Sbjct: 47 KGDFLAYNQEEHPVALQLG---------------GSNPQDLATCAKLAAERGYDEVNLNV 91
Query: 148 GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180
GCP + G +GA L + L+ + V + V
Sbjct: 92 GCPSDRVQNGRFGACLMAEPQLVADCVAAMKEV 124
>sp|Q9NX74|DUS2L_HUMAN tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Homo sapiens
GN=DUS2L PE=1 SV=1
Length = 493
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 124 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 166
+D++ A+L E GID+N+GCP+ + +G GA L D
Sbjct: 91 SDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLSD 133
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 50 VHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
V F + + + + E GID+N+GCP+ + +G GA L D
Sbjct: 84 VVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKQYSTKGGMGAALLSD 133
>sp|P45672|DUS_AZOBR Probable tRNA-dihydrouridine synthase OS=Azospirillum brasilense
GN=dus PE=3 SV=1
Length = 328
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 4/129 (3%)
Query: 48 LVVHFSWVSKNGPLFMGPLF-IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL 106
+ + +S GP+ + P+ + + + GC +V++ A ++++ L +
Sbjct: 1 MAIQIGTISLEGPVILAPMSGVTDLPFRRLVKQSGCGLVVSEMVASQAMIRENRQTLRMV 60
Query: 107 GFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQD 165
+ L C D + EAAKL E I DIN GCP GH G+ L
Sbjct: 61 ECEPEQFPMAVQLAGCEPDV--MAEAAKLNEDRGAAIIDINFGCPVKKVVNGHAGSSLMR 118
Query: 166 DWPLLTNLV 174
D L ++
Sbjct: 119 DEALAARIL 127
>sp|Q9D7B1|DUS2L_MOUSE tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Mus musculus
GN=Dus2l PE=1 SV=1
Length = 493
Score = 35.8 bits (81), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 124 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 166
+D++ A+L E GID+N+GCP+ + +G GA L D
Sbjct: 91 SDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLSD 133
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 50 VHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD 99
V F + + + + E GID+N+GCP+ + +G GA L D
Sbjct: 84 VVFQMGTSDAERALAVARLVENDVAGIDVNMGCPKEYSTKGGMGAALLSD 133
>sp|Q06063|DUS4_YEAST tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+] OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DUS4 PE=1
SV=1
Length = 367
Score = 35.4 bits (80), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 15/79 (18%)
Query: 98 DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRG 157
+D PL+ ++G N+ +L + ++ P+CDGI IN GCP R
Sbjct: 92 EDTPLIVQVGV---------------NNVADLLKFVEMVAPYCDGIGINCGCPIKEQIRE 136
Query: 158 HYGAYLQDDWPLLTNLVYS 176
G L + LL ++V++
Sbjct: 137 GIGCALIYNSDLLCSMVHA 155
>sp|O68273|DUSC_CUPNH tRNA-dihydrouridine synthase C OS=Cupriavidus necator (strain ATCC
17699 / H16 / DSM 428 / Stanier 337) GN=dusC PE=3 SV=2
Length = 322
Score = 34.7 bits (78), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 35 GAYLQDDWPLLTELV-VHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYG 93
G Y + P++ +L+ W+++N + L PH GID+N GCP V R G
Sbjct: 57 GGYTRSGTPMVIQLLGSDPEWLARNAA-YAATL---SPH--GIDLNFGCPAKVVNRHGGG 110
Query: 94 AYLQDDWPLLTELGFKTRSHMCGH 117
A L + LL + R+ + H
Sbjct: 111 AMLLTNPELLNRIVASVRAAVPAH 134
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 126 SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
++N AA L+ PH GID+N GCP V R GA L + LL +V S
Sbjct: 79 ARNAAYAATLS-PH--GIDLNFGCPAKVVNRHGGGAMLLTNPELLNRIVAS 126
>sp|Q09504|YQI2_CAEEL Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2
OS=Caenorhabditis elegans GN=C45G9.2 PE=3 SV=2
Length = 284
Score = 34.3 bits (77), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+ F +D L+EAA++ G+D+N GCP+ + +G+ L LL ++V
Sbjct: 53 VQFATDDPFVLSEAAEMVYKCSTGVDLNCGCPKHDVRSKGFGSALLSKPELLADMV 108
>sp|Q55FT1|DPYD_DICDI Dihydropyrimidine dehydrogenase [NADP(+)] OS=Dictyostelium
discoideum GN=pyd1 PE=2 SV=1
Length = 1009
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 120 MFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSP- 177
+ CG + ++ T+ AK+AE DGI++N+ CP + ++G A QD T LV+
Sbjct: 639 IMCGFNKEDWTQLAKMAEASGADGIELNLSCPHGMGEKGMGLACGQD-----TELVFHIC 693
Query: 178 NMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGILDNTGS 237
V P N+ + +AK H G +T + ++ L+G+ ++ +
Sbjct: 694 QWVRAATRLPFFAKLTPNVTEIKEIAKAAHDGGA-----DGVTAINTVSGLMGLKGDSNA 748
Query: 238 W 238
W
Sbjct: 749 W 749
>sp|Q99871|HAUS7_HUMAN HAUS augmin-like complex subunit 7 OS=Homo sapiens GN=HAUS7 PE=1
SV=3
Length = 368
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 15/107 (14%)
Query: 96 LQDDWPLL----TELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGID------- 144
LQD + L TE+ + + + GH LM C D + L + A+ +D
Sbjct: 90 LQDRFSSLKGVPTEVKIQEMTKL-GHELMLCAPDDQELLKGCACAQKQLHFMDQLLDTIR 148
Query: 145 -INIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190
+ IGC + H+ + + LL L SP++ ++ P CD
Sbjct: 149 SLTIGCSSCSSLMEHFEDTREKNEALLGELFSSPHLQ--MLLNPECD 193
>sp|P44794|DUSA_HAEIN tRNA-dihydrouridine synthase A OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusA PE=3 SV=1
Length = 327
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+L G+D + L AKLAE I++N+GCP + G +GA L L+ + V
Sbjct: 67 ALQLGGSDPEQLKYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCV 124
>sp|Q08111|DUS_RHOCB Probable tRNA-dihydrouridine synthase OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=dus PE=3
SV=1
Length = 324
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 118 SLMFCGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYL 163
S+ G ++ + EAAK+ A+ + IDIN+GCP G GA L
Sbjct: 71 SVQLAGREAAPMAEAAKIVADMGAEIIDINMGCPAKKVTGGLSGAAL 117
>sp|Q9CL29|DUSA_PASMU tRNA-dihydrouridine synthase A OS=Pasteurella multocida (strain
Pm70) GN=dusA PE=3 SV=1
Length = 327
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174
+L G+D L + AK+A+ I++N+GCP + G +GA L L+ + V
Sbjct: 67 ALQLGGSDPTQLAQCAKIAQQRGYTEINLNVGCPSDRVQNGMFGACLMAKADLVADCV 124
>sp|Q9FK05|PME61_ARATH Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis
thaliana GN=PME61 PE=1 SV=1
Length = 587
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 22 IGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS----------WVSKNGPLFMGPLFIAEP 71
+ P + A +G Y YL W L + +V S W+ NGP + L+ E
Sbjct: 473 LATPDLEASKGSYPTYLGRPWKLYSRVVYMMSDMGDHIDPRGWLEWNGPFALDSLYYGEY 532
Query: 72 HCDGIDINIG 81
G+ IG
Sbjct: 533 MNKGLGSGIG 542
>sp|Q8XYX1|DUSC_RALSO tRNA-dihydrouridine synthase C OS=Ralstonia solanacearum (strain
GMI1000) GN=dusC PE=3 SV=1
Length = 326
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 126 SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
++N +AA ++ PH GID+N GCP V R GA L LL +V +
Sbjct: 79 ARNAAQAATVS-PH--GIDLNFGCPAKVVNRHGGGAMLLATPELLHRIVST 126
>sp|P37567|DUS1_BACSU Probable tRNA-dihydrouridine synthase 1 OS=Bacillus subtilis
(strain 168) GN=dus1 PE=3 SV=1
Length = 333
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 118 SLMFCGNDSKNLTEAAKLAEPH--CDGIDINIGCP 150
SL G + L EAAK + + D IDIN+GCP
Sbjct: 69 SLQIFGGKKETLVEAAKFVDQNTTADIIDINMGCP 103
>sp|Q9VW47|MED12_DROME Mediator of RNA polymerase II transcription subunit 12 OS=Drosophila
melanogaster GN=kto PE=1 SV=2
Length = 2531
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 185 AEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAMLVGILDNTGSWT 239
AE CD + + + H Y + ++ +++EL + +M+V IL+N G WT
Sbjct: 1438 AEQLCDMIIDEMLTAKQAQRVLHMICYPEPEFNIISELDQRSMIVRILENLGQWT 1492
>sp|Q8H3C8|ILL8_ORYSJ IAA-amino acid hydrolase ILR1-like 8 OS=Oryza sativa subsp.
japonica GN=ILL8 PE=2 SV=1
Length = 444
Score = 31.2 bits (69), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 49/119 (41%), Gaps = 16/119 (13%)
Query: 76 IDINIGCPQMVAKRGHYGAY-LQD--DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEA 132
ID G +VA R A LQ+ DW ++ K + H CGH L A
Sbjct: 105 IDGGAGAGPVVALRADMDALPLQELVDWEFKSQE--KGKMHACGHDAHVT-----MLLGA 157
Query: 133 AKLAEPHCDGIDINIGCPQMVAKRGHYGAY------LQDDWPLLTNLVYSPNMVHFVIA 185
AKL + D + I A+ GH GAY L DD ++ L PN+ V+A
Sbjct: 158 AKLLQSRKDELKGTIKLVFQPAEEGHAGAYHVLESGLLDDVSVIFGLHVIPNLPVGVVA 216
>sp|Q6LG16|AGUA_PHOPR Putative agmatine deiminase OS=Photobacterium profundum GN=aguA
PE=3 SV=2
Length = 363
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 64 GPLFIAEPHCDGIDINIGCPQMVAKR--GHYGAYLQDD----WPLLTE 105
GPL+I+E +G+D++ G ++ +R G Y YL + +PLL E
Sbjct: 272 GPLYISEDEANGVDVSEGMERVPGERLAGSYANYLISNEHIIYPLLDE 319
>sp|P72872|DUS2_SYNY3 Probable tRNA-dihydrouridine synthase 2 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=dus2 PE=3 SV=1
Length = 334
Score = 30.8 bits (68), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 8/97 (8%)
Query: 118 SLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176
+L G+D + L E A++ + D I++N+GCP + G++GA L L+ V +
Sbjct: 68 ALQLGGDDPQLLAECARIGQDWGYDEINLNVGCPSDRVQSGNFGACLMAQPDLVAQCVSA 127
Query: 177 -------PNMVHFVIAEPHCDGNDINIGCPQMVAKRG 206
P V I H D + + ++VA G
Sbjct: 128 MQKAVEIPVTVKHRIGIDHRDSYEDLVHFVEIVANAG 164
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.142 0.480
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,524,597
Number of Sequences: 539616
Number of extensions: 4222197
Number of successful extensions: 7221
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 7100
Number of HSP's gapped (non-prelim): 167
length of query: 240
length of database: 191,569,459
effective HSP length: 114
effective length of query: 126
effective length of database: 130,053,235
effective search space: 16386707610
effective search space used: 16386707610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)