Query psy7344
Match_columns 240
No_of_seqs 209 out of 2193
Neff 7.5
Searched_HMMs 46136
Date Sat Aug 17 00:20:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2335|consensus 100.0 5.3E-35 1.1E-39 259.0 11.0 156 68-240 22-193 (358)
2 COG0042 tRNA-dihydrouridine sy 100.0 1.8E-31 3.8E-36 239.4 10.0 162 60-239 6-187 (323)
3 PF01207 Dus: Dihydrouridine s 100.0 4.6E-31 1E-35 235.8 11.4 154 68-239 1-173 (309)
4 TIGR00742 yjbN tRNA dihydrouri 100.0 3.4E-28 7.4E-33 217.8 11.1 155 67-236 3-174 (318)
5 PRK10550 tRNA-dihydrouridine s 99.9 4.4E-27 9.6E-32 210.2 11.8 157 67-239 3-184 (312)
6 PRK10415 tRNA-dihydrouridine s 99.9 5.9E-27 1.3E-31 210.3 11.4 158 63-239 8-184 (321)
7 PRK11815 tRNA-dihydrouridine s 99.9 2.5E-24 5.4E-29 194.2 11.5 150 65-227 11-176 (333)
8 COG0042 tRNA-dihydrouridine sy 99.9 8.6E-25 1.9E-29 196.2 5.6 151 8-180 86-247 (323)
9 TIGR00737 nifR3_yhdG putative 99.9 1.6E-23 3.5E-28 188.0 12.9 161 63-239 6-182 (319)
10 cd02911 arch_FMN Archeal FMN-b 99.9 1.4E-21 3E-26 168.2 11.1 109 113-239 71-183 (233)
11 KOG2333|consensus 99.9 1.2E-21 2.6E-26 178.6 10.2 156 63-240 263-443 (614)
12 PF01207 Dus: Dihydrouridine s 99.9 9.2E-23 2E-27 182.3 2.1 142 9-172 74-225 (309)
13 cd02801 DUS_like_FMN Dihydrour 99.9 4.9E-21 1.1E-25 163.6 12.0 158 67-239 2-173 (231)
14 TIGR00736 nifR3_rel_arch TIM-b 99.8 5.7E-21 1.2E-25 163.6 11.0 110 113-239 66-180 (231)
15 KOG2335|consensus 99.8 6.4E-21 1.4E-25 169.5 6.6 192 5-226 32-236 (358)
16 TIGR00742 yjbN tRNA dihydrouri 99.8 1.8E-20 4E-25 167.9 6.6 148 9-178 75-241 (318)
17 PRK10415 tRNA-dihydrouridine s 99.8 6.8E-20 1.5E-24 164.6 7.1 151 8-180 84-244 (321)
18 PRK10550 tRNA-dihydrouridine s 99.8 9E-20 2E-24 163.1 6.4 144 9-174 83-238 (312)
19 KOG2334|consensus 99.7 5.1E-18 1.1E-22 153.0 10.0 151 64-230 10-191 (477)
20 cd02940 DHPD_FMN Dihydropyrimi 99.7 8.3E-18 1.8E-22 149.8 11.2 111 114-238 99-235 (299)
21 TIGR00736 nifR3_rel_arch TIM-b 99.7 1.5E-17 3.2E-22 142.6 5.9 129 12-149 90-223 (231)
22 TIGR01037 pyrD_sub1_fam dihydr 99.7 5.6E-16 1.2E-20 137.9 12.3 98 114-226 90-193 (300)
23 PRK11815 tRNA-dihydrouridine s 99.7 9.7E-17 2.1E-21 144.9 6.7 147 10-178 86-251 (333)
24 PRK08318 dihydropyrimidine deh 99.6 4.8E-16 1E-20 144.5 10.1 110 114-237 99-234 (420)
25 cd02911 arch_FMN Archeal FMN-b 99.6 4.3E-16 9.4E-21 134.1 7.2 120 14-148 97-222 (233)
26 KOG2333|consensus 99.6 1.7E-15 3.7E-20 138.7 8.9 142 15-175 347-500 (614)
27 TIGR00737 nifR3_yhdG putative 99.6 2.5E-15 5.4E-20 134.9 7.3 149 9-179 83-241 (319)
28 PRK07259 dihydroorotate dehydr 99.6 2.7E-14 5.8E-19 127.2 11.7 98 114-226 91-193 (301)
29 cd04740 DHOD_1B_like Dihydroor 99.6 3.8E-14 8.1E-19 125.9 12.5 98 113-225 88-189 (296)
30 cd02810 DHOD_DHPD_FMN Dihydroo 99.5 1.8E-13 3.9E-18 121.0 11.3 98 114-227 98-201 (289)
31 cd04738 DHOD_2_like Dihydrooro 99.5 5.2E-13 1.1E-17 120.5 11.3 104 113-228 127-242 (327)
32 PLN02495 oxidoreductase, actin 99.4 1.3E-12 2.9E-17 119.7 10.9 102 114-227 113-219 (385)
33 KOG2334|consensus 99.4 3.1E-13 6.6E-18 122.3 5.6 209 10-239 102-375 (477)
34 cd04739 DHOD_like Dihydroorota 99.4 2.7E-12 5.8E-17 115.7 10.8 97 114-226 99-199 (325)
35 cd04741 DHOD_1A_like Dihydroor 99.4 6.1E-12 1.3E-16 111.9 11.2 94 113-223 90-194 (294)
36 PRK05286 dihydroorotate dehydr 99.3 4.7E-12 1E-16 115.0 10.0 103 113-227 136-250 (344)
37 cd02801 DUS_like_FMN Dihydrour 99.3 2E-12 4.4E-17 110.4 5.7 144 10-175 76-228 (231)
38 PRK07565 dihydroorotate dehydr 99.3 1.7E-11 3.7E-16 110.8 10.6 98 114-227 101-202 (334)
39 cd02940 DHPD_FMN Dihydropyrimi 99.3 3.5E-12 7.6E-17 113.7 5.2 148 9-176 121-298 (299)
40 PRK08318 dihydropyrimidine deh 99.2 2.2E-11 4.9E-16 113.3 6.4 134 9-148 121-284 (420)
41 TIGR01037 pyrD_sub1_fam dihydr 99.1 7.1E-11 1.5E-15 105.1 6.8 138 14-180 118-283 (300)
42 COG0167 PyrD Dihydroorotate de 99.1 1E-09 2.3E-14 97.7 10.9 96 115-226 97-197 (310)
43 TIGR01036 pyrD_sub2 dihydrooro 99.0 2.9E-09 6.4E-14 96.4 10.7 103 114-226 134-248 (335)
44 PRK02506 dihydroorotate dehydr 98.9 4.4E-09 9.5E-14 94.3 9.9 94 114-223 92-192 (310)
45 TIGR01304 IMP_DH_rel_2 IMP deh 98.9 9.8E-10 2.1E-14 100.4 5.5 130 63-239 43-178 (369)
46 PF01180 DHO_dh: Dihydroorotat 98.8 1.7E-08 3.7E-13 89.7 8.0 96 114-225 96-199 (295)
47 PRK04180 pyridoxal biosynthesi 98.8 3.7E-08 8E-13 86.4 9.6 172 8-225 31-236 (293)
48 cd04740 DHOD_1B_like Dihydroor 98.8 1.4E-08 3.1E-13 90.2 6.9 145 9-180 110-280 (296)
49 PRK07259 dihydroorotate dehydr 98.7 1.9E-08 4.1E-13 89.6 6.0 146 9-179 112-282 (301)
50 cd02809 alpha_hydroxyacid_oxid 98.7 7E-08 1.5E-12 86.1 8.8 97 115-239 116-215 (299)
51 cd04741 DHOD_1A_like Dihydroor 98.7 5.8E-08 1.3E-12 86.4 8.2 141 14-179 119-292 (294)
52 cd02932 OYE_YqiM_FMN Old yello 98.7 1E-07 2.2E-12 86.4 8.8 93 127-228 154-269 (336)
53 PLN02826 dihydroorotate dehydr 98.6 1.6E-07 3.5E-12 87.1 9.6 103 116-226 188-300 (409)
54 cd04733 OYE_like_2_FMN Old yel 98.6 9.8E-08 2.1E-12 86.5 8.0 97 125-230 147-264 (338)
55 cd02810 DHOD_DHPD_FMN Dihydroo 98.6 1.8E-08 4E-13 89.0 3.1 142 9-175 119-288 (289)
56 PRK13523 NADPH dehydrogenase N 98.6 1.1E-07 2.3E-12 86.4 7.5 89 127-226 142-251 (337)
57 TIGR02151 IPP_isom_2 isopenten 98.6 1.7E-07 3.7E-12 84.8 8.1 144 64-226 53-214 (333)
58 PRK05437 isopentenyl pyrophosp 98.5 3E-07 6.6E-12 83.8 8.9 144 64-226 60-221 (352)
59 cd02803 OYE_like_FMN_family Ol 98.5 2.7E-07 5.8E-12 83.0 7.7 95 126-229 140-255 (327)
60 cd04734 OYE_like_3_FMN Old yel 98.5 2.7E-07 5.9E-12 83.9 7.8 88 127-225 141-252 (343)
61 cd02931 ER_like_FMN Enoate red 98.5 6.6E-07 1.4E-11 82.5 9.0 94 127-229 150-279 (382)
62 PRK08255 salicylyl-CoA 5-hydro 98.4 5.7E-07 1.2E-11 89.7 8.3 93 127-228 551-665 (765)
63 PRK05286 dihydroorotate dehydr 98.4 8E-08 1.7E-12 87.4 0.9 142 13-180 168-339 (344)
64 cd04738 DHOD_2_like Dihydrooro 98.4 1.5E-07 3.2E-12 85.1 2.0 136 14-176 160-326 (327)
65 cd02933 OYE_like_FMN Old yello 98.3 1.5E-06 3.2E-11 78.9 8.1 93 126-228 151-268 (338)
66 cd02811 IDI-2_FMN Isopentenyl- 98.3 1.9E-06 4.2E-11 77.8 8.2 93 114-224 112-211 (326)
67 cd04735 OYE_like_4_FMN Old yel 98.3 1.8E-06 4E-11 78.7 7.4 96 126-226 143-259 (353)
68 PRK04180 pyridoxal biosynthesi 98.3 1E-06 2.3E-11 77.4 4.9 74 130-221 27-102 (293)
69 cd04734 OYE_like_3_FMN Old yel 98.1 1.7E-05 3.7E-10 72.2 10.2 153 10-226 150-318 (343)
70 PRK14024 phosphoribosyl isomer 98.1 1.6E-05 3.5E-10 68.8 8.9 109 99-239 63-180 (241)
71 cd04739 DHOD_like Dihydroorota 98.1 6E-06 1.3E-10 74.6 6.3 143 10-179 121-286 (325)
72 cd02930 DCR_FMN 2,4-dienoyl-Co 98.1 1.2E-05 2.5E-10 73.4 7.9 86 127-221 137-243 (353)
73 PRK13523 NADPH dehydrogenase N 98.1 1.6E-06 3.4E-11 78.8 1.8 149 10-180 151-325 (337)
74 PRK01033 imidazole glycerol ph 98.0 4E-05 8.6E-10 67.0 9.4 106 99-239 62-186 (258)
75 PRK08649 inosine 5-monophospha 98.0 1.3E-05 2.8E-10 73.5 6.4 127 63-239 46-177 (368)
76 cd04733 OYE_like_2_FMN Old yel 98.0 4.9E-05 1.1E-09 68.9 9.7 153 10-225 158-324 (338)
77 cd04747 OYE_like_5_FMN Old yel 98.0 2.5E-05 5.5E-10 71.5 7.8 89 127-226 144-257 (361)
78 cd04731 HisF The cyclase subun 98.0 4.2E-05 9.2E-10 66.0 8.9 99 99-228 59-175 (243)
79 PLN02495 oxidoreductase, actin 98.0 1.9E-05 4.1E-10 72.8 6.9 152 8-179 134-319 (385)
80 PRK07565 dihydroorotate dehydr 97.9 1.2E-05 2.6E-10 72.9 4.8 143 10-180 123-289 (334)
81 cd04732 HisA HisA. Phosphorib 97.9 0.00011 2.4E-09 62.8 9.5 106 99-239 61-180 (234)
82 cd02929 TMADH_HD_FMN Trimethyl 97.9 2.7E-05 6E-10 71.5 6.0 142 10-176 159-335 (370)
83 TIGR03572 WbuZ glycosyl amidat 97.8 0.0002 4.3E-09 61.4 9.6 99 99-229 62-180 (232)
84 COG0167 PyrD Dihydroorotate de 97.7 9.8E-05 2.1E-09 66.1 7.1 147 10-180 118-291 (310)
85 PRK00748 1-(5-phosphoribosyl)- 97.7 0.00019 4.2E-09 61.3 8.4 107 99-239 62-180 (233)
86 cd04735 OYE_like_4_FMN Old yel 97.6 1.4E-05 3.1E-10 72.9 0.8 147 10-176 153-329 (353)
87 PRK13125 trpA tryptophan synth 97.6 0.00016 3.5E-09 62.6 7.3 85 124-223 15-109 (244)
88 KOG1799|consensus 97.6 3.6E-05 7.8E-10 69.1 3.0 98 114-223 201-306 (471)
89 cd02933 OYE_like_FMN Old yello 97.6 6E-05 1.3E-09 68.5 4.4 142 10-175 161-329 (338)
90 cd02803 OYE_like_FMN_family Ol 97.6 7.8E-05 1.7E-09 67.0 5.1 144 9-174 149-325 (327)
91 PRK08255 salicylyl-CoA 5-hydro 97.6 0.00029 6.4E-09 70.5 9.7 147 10-225 560-719 (765)
92 TIGR01304 IMP_DH_rel_2 IMP deh 97.6 0.00029 6.2E-09 64.7 8.5 164 40-225 116-287 (369)
93 cd02929 TMADH_HD_FMN Trimethyl 97.6 0.00023 5.1E-09 65.4 7.8 88 127-223 150-259 (370)
94 cd02809 alpha_hydroxyacid_oxid 97.5 4.9E-05 1.1E-09 67.8 2.8 116 11-147 139-257 (299)
95 cd02932 OYE_YqiM_FMN Old yello 97.4 0.00037 7.9E-09 63.2 7.1 136 71-225 166-322 (336)
96 PRK02506 dihydroorotate dehydr 97.3 0.00031 6.8E-09 63.1 4.9 144 11-180 115-291 (310)
97 PRK02083 imidazole glycerol ph 97.2 0.0012 2.5E-08 57.4 7.7 107 97-225 60-176 (253)
98 cd04722 TIM_phosphate_binding 97.2 0.002 4.3E-08 52.2 8.5 90 114-229 57-150 (200)
99 TIGR00007 phosphoribosylformim 97.2 0.0029 6.2E-08 54.0 9.7 106 99-239 60-179 (230)
100 PRK08649 inosine 5-monophospha 97.1 0.0018 3.8E-08 59.6 8.1 170 39-226 114-289 (368)
101 cd00381 IMPDH IMPDH: The catal 97.1 0.0065 1.4E-07 55.0 11.3 129 63-222 33-163 (325)
102 cd02930 DCR_FMN 2,4-dienoyl-Co 97.1 0.0025 5.4E-08 58.2 8.7 151 11-225 147-308 (353)
103 TIGR02151 IPP_isom_2 isopenten 97.1 0.0029 6.3E-08 57.4 8.8 172 35-225 91-285 (333)
104 PRK13585 1-(5-phosphoribosyl)- 96.9 0.006 1.3E-07 52.4 9.1 114 99-239 64-183 (241)
105 cd02931 ER_like_FMN Enoate red 96.9 0.0055 1.2E-07 56.6 9.1 139 72-225 163-337 (382)
106 TIGR00735 hisF imidazoleglycer 96.8 0.0088 1.9E-07 52.1 8.9 114 99-239 62-189 (254)
107 cd04747 OYE_like_5_FMN Old yel 96.8 0.0019 4E-08 59.3 4.8 144 10-175 153-343 (361)
108 PRK14024 phosphoribosyl isomer 96.8 0.0013 2.9E-08 56.8 3.7 110 31-148 100-224 (241)
109 PRK05437 isopentenyl pyrophosp 96.4 0.029 6.3E-07 51.3 10.2 132 73-225 149-292 (352)
110 PF01680 SOR_SNZ: SOR/SNZ fami 96.2 0.019 4E-07 47.4 7.0 73 131-221 25-99 (208)
111 cd04730 NPD_like 2-Nitropropan 96.1 0.051 1.1E-06 46.2 9.5 123 66-225 4-132 (236)
112 TIGR02708 L_lactate_ox L-lacta 95.9 0.045 9.8E-07 50.3 8.9 100 98-225 215-314 (367)
113 TIGR03151 enACPred_II putative 95.9 0.063 1.4E-06 48.2 9.5 123 67-227 14-141 (307)
114 PF01180 DHO_dh: Dihydroorotat 95.8 0.019 4E-07 51.0 5.8 137 70-222 122-273 (295)
115 PRK05458 guanosine 5'-monophos 95.7 0.21 4.5E-06 45.3 12.2 143 64-239 37-189 (326)
116 TIGR01036 pyrD_sub2 dihydrooro 95.7 0.012 2.6E-07 53.5 4.0 44 14-64 166-216 (335)
117 COG1902 NemA NADH:flavin oxido 95.7 0.043 9.3E-07 50.4 7.7 88 127-223 149-259 (363)
118 TIGR01306 GMP_reduct_2 guanosi 95.7 0.16 3.4E-06 46.0 11.0 130 65-225 35-171 (321)
119 PF00724 Oxidored_FMN: NADH:fl 95.6 0.017 3.7E-07 52.5 4.8 86 127-221 149-255 (341)
120 TIGR02320 PEP_mutase phosphoen 95.6 0.18 4E-06 44.8 11.1 98 114-223 78-190 (285)
121 cd02811 IDI-2_FMN Isopentenyl- 95.5 0.1 2.2E-06 47.2 9.3 131 73-224 141-285 (326)
122 PRK10605 N-ethylmaleimide redu 95.4 0.062 1.4E-06 49.3 7.8 87 126-222 158-269 (362)
123 TIGR01163 rpe ribulose-phospha 95.3 0.1 2.2E-06 43.5 8.1 84 119-225 3-89 (210)
124 cd00377 ICL_PEPM Members of th 95.3 0.21 4.6E-06 43.3 10.2 102 114-225 69-183 (243)
125 COG0214 SNZ1 Pyridoxine biosyn 95.3 0.048 1E-06 46.9 5.9 73 131-221 31-105 (296)
126 cd00945 Aldolase_Class_I Class 95.1 0.27 6E-06 40.0 10.0 105 100-223 34-150 (201)
127 PRK01033 imidazole glycerol ph 95.0 0.19 4.1E-06 43.8 9.1 106 96-225 106-228 (258)
128 PLN02826 dihydroorotate dehydr 94.4 0.21 4.5E-06 46.7 8.4 137 68-221 212-369 (409)
129 TIGR03572 WbuZ glycosyl amidat 94.3 0.33 7.1E-06 41.4 8.9 105 94-221 104-226 (232)
130 PTZ00170 D-ribulose-5-phosphat 94.3 0.29 6.3E-06 42.0 8.5 86 117-227 9-100 (228)
131 cd04731 HisF The cyclase subun 94.2 0.43 9.2E-06 41.0 9.3 76 126-225 148-225 (243)
132 TIGR01306 GMP_reduct_2 guanosi 94.1 0.48 1E-05 42.9 9.8 87 124-225 143-229 (321)
133 TIGR02317 prpB methylisocitrat 94.1 0.52 1.1E-05 41.9 9.8 100 114-225 73-184 (285)
134 PRK05458 guanosine 5'-monophos 94.0 0.42 9.1E-06 43.3 9.3 101 101-225 129-232 (326)
135 PRK07807 inosine 5-monophospha 94.0 0.32 6.9E-06 46.4 8.9 89 120-221 270-358 (479)
136 PRK11320 prpB 2-methylisocitra 93.9 0.63 1.4E-05 41.6 10.1 99 114-225 78-189 (292)
137 cd00408 DHDPS-like Dihydrodipi 93.7 0.42 9.1E-06 41.9 8.7 81 125-224 16-101 (281)
138 TIGR02708 L_lactate_ox L-lacta 93.7 0.49 1.1E-05 43.6 9.3 104 115-239 133-271 (367)
139 cd03319 L-Ala-DL-Glu_epimerase 93.6 0.55 1.2E-05 42.0 9.2 80 114-219 123-208 (316)
140 COG0036 Rpe Pentose-5-phosphat 93.6 0.58 1.3E-05 40.0 8.8 83 116-224 5-93 (220)
141 cd00429 RPE Ribulose-5-phospha 93.4 0.77 1.7E-05 38.0 9.4 87 117-225 2-90 (211)
142 TIGR02319 CPEP_Pphonmut carbox 93.4 0.79 1.7E-05 41.0 9.9 97 114-223 77-186 (294)
143 KOG1606|consensus 93.4 0.15 3.3E-06 43.3 4.9 84 131-240 32-117 (296)
144 cd04736 MDH_FMN Mandelate dehy 93.4 0.66 1.4E-05 42.7 9.6 94 99-225 224-320 (361)
145 cd04737 LOX_like_FMN L-Lactate 93.1 0.66 1.4E-05 42.5 9.1 93 115-224 125-253 (351)
146 PRK08005 epimerase; Validated 93.1 0.74 1.6E-05 39.1 8.8 85 117-225 3-91 (210)
147 PF13714 PEP_mutase: Phosphoen 93.0 0.51 1.1E-05 40.9 7.8 97 114-226 69-179 (238)
148 TIGR02321 Pphn_pyruv_hyd phosp 92.8 1 2.2E-05 40.1 9.7 101 114-224 75-188 (290)
149 cd00952 CHBPH_aldolase Trans-o 92.8 0.74 1.6E-05 41.3 8.8 80 125-223 27-111 (309)
150 PRK09722 allulose-6-phosphate 92.7 0.9 1.9E-05 39.1 8.9 85 117-225 5-92 (229)
151 cd00381 IMPDH IMPDH: The catal 92.6 1.1 2.5E-05 40.4 9.9 84 124-221 141-225 (325)
152 TIGR01303 IMP_DH_rel_1 IMP deh 92.5 0.73 1.6E-05 43.9 8.9 90 115-221 267-356 (475)
153 COG2513 PrpB PEP phosphonomuta 92.5 1.2 2.6E-05 39.5 9.5 103 113-228 77-192 (289)
154 cd04737 LOX_like_FMN L-Lactate 92.3 1.1 2.5E-05 41.0 9.5 97 99-224 209-306 (351)
155 cd04727 pdxS PdxS is a subunit 92.1 1 2.2E-05 39.9 8.6 156 31-221 43-224 (283)
156 cd02922 FCB2_FMN Flavocytochro 91.9 0.89 1.9E-05 41.5 8.3 101 115-228 118-247 (344)
157 KOG1436|consensus 91.8 0.85 1.8E-05 41.1 7.7 102 116-227 180-291 (398)
158 PF00834 Ribul_P_3_epim: Ribul 91.7 0.47 1E-05 40.0 5.9 85 117-227 2-92 (201)
159 PRK00748 1-(5-phosphoribosyl)- 91.7 1.2 2.5E-05 37.8 8.4 111 93-228 103-225 (233)
160 PLN02274 inosine-5'-monophosph 91.6 1.4 3.1E-05 42.3 9.7 105 100-225 277-383 (505)
161 PRK05581 ribulose-phosphate 3- 91.5 0.96 2.1E-05 37.9 7.6 87 117-225 6-94 (220)
162 PLN02411 12-oxophytodienoate r 91.4 0.63 1.4E-05 43.2 6.9 88 126-223 164-281 (391)
163 cd04732 HisA HisA. Phosphorib 91.4 1.5 3.3E-05 37.1 8.9 105 96-226 105-222 (234)
164 TIGR00343 pyridoxal 5'-phospha 91.3 3.4 7.4E-05 36.7 10.9 149 31-221 45-227 (287)
165 TIGR00007 phosphoribosylformim 91.1 1.8 3.9E-05 36.7 9.0 108 96-228 104-223 (230)
166 PTZ00314 inosine-5'-monophosph 91.1 1.8 3.8E-05 41.6 9.8 90 120-222 284-373 (495)
167 TIGR00735 hisF imidazoleglycer 91.1 1.4 3.1E-05 38.2 8.5 76 126-225 154-231 (254)
168 cd04724 Tryptophan_synthase_al 91.0 0.81 1.8E-05 39.5 6.8 85 124-221 11-110 (242)
169 PRK05567 inosine 5'-monophosph 90.8 1.7 3.6E-05 41.5 9.3 84 124-221 275-359 (486)
170 TIGR00262 trpA tryptophan synt 90.5 1.3 2.8E-05 38.7 7.7 96 117-223 12-123 (256)
171 COG0329 DapA Dihydrodipicolina 90.4 1.9 4.1E-05 38.6 8.8 80 125-223 23-107 (299)
172 PRK08883 ribulose-phosphate 3- 90.4 1.3 2.7E-05 37.9 7.3 84 119-225 4-91 (220)
173 PRK08745 ribulose-phosphate 3- 90.4 2.2 4.7E-05 36.6 8.7 86 117-225 6-95 (223)
174 PF05690 ThiG: Thiazole biosyn 90.2 1.2 2.7E-05 38.4 7.0 67 132-221 136-203 (247)
175 PF00478 IMPDH: IMP dehydrogen 90.0 0.94 2E-05 41.5 6.6 88 124-225 155-242 (352)
176 PLN02535 glycolate oxidase 89.9 3.3 7.2E-05 38.1 10.1 95 99-225 211-309 (364)
177 PLN02417 dihydrodipicolinate s 89.9 2.2 4.7E-05 37.7 8.7 80 125-223 20-104 (280)
178 PF01070 FMN_dh: FMN-dependent 89.8 1.7 3.6E-05 39.9 8.1 96 99-225 213-311 (356)
179 PRK07535 methyltetrahydrofolat 89.8 1.7 3.6E-05 38.1 7.8 77 124-223 22-124 (261)
180 TIGR01305 GMP_reduct_1 guanosi 89.7 2.9 6.3E-05 38.1 9.3 85 124-221 156-240 (343)
181 TIGR03249 KdgD 5-dehydro-4-deo 89.7 2.4 5.2E-05 37.6 8.9 80 125-223 24-107 (296)
182 TIGR00683 nanA N-acetylneurami 89.6 2.5 5.5E-05 37.5 8.9 80 125-223 19-104 (290)
183 PLN02979 glycolate oxidase 89.6 3.8 8.2E-05 37.7 10.1 96 99-225 211-309 (366)
184 PRK07107 inosine 5-monophospha 89.5 1.9 4E-05 41.5 8.4 99 119-225 285-383 (502)
185 PRK03620 5-dehydro-4-deoxygluc 89.4 2.5 5.4E-05 37.7 8.8 80 125-223 26-109 (303)
186 TIGR00343 pyridoxal 5'-phospha 89.3 1.7 3.7E-05 38.6 7.4 72 131-220 21-94 (287)
187 cd04722 TIM_phosphate_binding 89.3 1.4 3.1E-05 35.2 6.6 41 9-64 79-120 (200)
188 TIGR01302 IMP_dehydrog inosine 88.9 3 6.6E-05 39.4 9.4 84 124-221 271-355 (450)
189 TIGR01305 GMP_reduct_1 guanosi 88.9 12 0.00027 34.1 12.7 131 62-222 43-178 (343)
190 TIGR02313 HpaI-NOT-DapA 2,4-di 88.8 3 6.6E-05 37.0 8.9 80 125-223 19-103 (294)
191 PLN02334 ribulose-phosphate 3- 88.7 3.3 7.1E-05 35.3 8.7 87 116-224 9-97 (229)
192 cd07944 DRE_TIM_HOA_like 4-hyd 88.7 8.1 0.00018 33.8 11.3 145 8-180 27-179 (266)
193 cd02808 GltS_FMN Glutamate syn 88.7 3.6 7.8E-05 38.2 9.5 92 115-225 215-316 (392)
194 PRK03170 dihydrodipicolinate s 88.4 3.2 6.9E-05 36.6 8.7 79 125-222 20-103 (292)
195 PRK14057 epimerase; Provisiona 88.2 3.3 7.1E-05 36.2 8.4 85 115-225 20-108 (254)
196 cd00951 KDGDH 5-dehydro-4-deox 88.2 3.1 6.8E-05 36.8 8.5 78 125-221 19-100 (289)
197 cd00740 MeTr MeTr subgroup of 88.1 2.8 6.1E-05 36.5 8.0 78 124-224 23-128 (252)
198 PRK10605 N-ethylmaleimide redu 88.1 3.9 8.6E-05 37.5 9.3 76 124-225 245-323 (362)
199 PF04481 DUF561: Protein of un 88.1 5.8 0.00013 34.0 9.5 108 97-229 47-159 (242)
200 PRK11613 folP dihydropteroate 88.1 2.3 5E-05 37.8 7.5 82 125-224 36-142 (282)
201 TIGR00674 dapA dihydrodipicoli 88.0 3.7 8.1E-05 36.1 8.9 80 125-223 17-101 (285)
202 cd00953 KDG_aldolase KDG (2-ke 88.0 3.8 8.3E-05 36.1 8.9 80 124-223 17-99 (279)
203 PLN02493 probable peroxisomal 88.0 5.5 0.00012 36.8 10.1 96 99-225 212-310 (367)
204 cd04743 NPD_PKS 2-Nitropropane 88.0 4.6 0.0001 36.5 9.4 121 67-226 5-134 (320)
205 cd00950 DHDPS Dihydrodipicolin 88.0 3.4 7.5E-05 36.2 8.6 80 125-223 19-103 (284)
206 PRK04147 N-acetylneuraminate l 87.9 3.9 8.5E-05 36.2 9.0 80 125-223 22-107 (293)
207 PRK11197 lldD L-lactate dehydr 87.9 3.9 8.5E-05 37.9 9.2 96 99-225 233-331 (381)
208 PRK13585 1-(5-phosphoribosyl)- 87.9 2.8 6E-05 35.8 7.7 75 128-227 150-226 (241)
209 PRK02083 imidazole glycerol ph 87.8 4.2 9E-05 35.1 8.9 74 128-225 154-229 (253)
210 cd03332 LMO_FMN L-Lactate 2-mo 87.8 4.3 9.4E-05 37.6 9.4 96 99-225 241-339 (383)
211 COG1902 NemA NADH:flavin oxido 87.7 2.6 5.6E-05 38.8 7.8 94 114-225 216-320 (363)
212 cd00958 DhnA Class I fructose- 87.7 4.6 9.9E-05 34.3 9.0 85 113-229 121-220 (235)
213 COG0214 SNZ1 Pyridoxine biosyn 87.7 1.2 2.6E-05 38.5 5.1 32 116-148 208-239 (296)
214 PRK00230 orotidine 5'-phosphat 87.6 3.5 7.6E-05 35.3 8.2 82 116-226 4-91 (230)
215 PRK08091 ribulose-phosphate 3- 87.5 3.5 7.7E-05 35.5 8.1 83 115-225 13-101 (228)
216 cd00954 NAL N-Acetylneuraminic 87.5 4.9 0.00011 35.5 9.3 80 125-223 19-104 (288)
217 PF00701 DHDPS: Dihydrodipicol 87.4 4.3 9.4E-05 35.7 8.9 80 125-223 20-104 (289)
218 PRK13306 ulaD 3-keto-L-gulonat 87.3 2.4 5.3E-05 36.0 7.0 85 116-226 5-91 (216)
219 PRK00507 deoxyribose-phosphate 87.2 5.3 0.00011 34.2 9.0 69 129-221 77-155 (221)
220 TIGR00284 dihydropteroate synt 87.1 2.2 4.7E-05 41.0 7.2 68 132-223 171-259 (499)
221 PRK05096 guanosine 5'-monophos 86.9 2.2 4.7E-05 38.9 6.7 87 122-221 155-241 (346)
222 cd00945 Aldolase_Class_I Class 86.9 3.5 7.7E-05 33.3 7.6 67 125-223 11-86 (201)
223 cd02808 GltS_FMN Glutamate syn 86.7 1.8 3.8E-05 40.3 6.2 51 165-226 196-249 (392)
224 PF00809 Pterin_bind: Pterin b 86.6 1.5 3.1E-05 37.1 5.2 82 131-227 24-128 (210)
225 PRK13813 orotidine 5'-phosphat 86.4 3.6 7.8E-05 34.5 7.5 83 116-225 5-90 (215)
226 cd00331 IGPS Indole-3-glycerol 86.4 4.3 9.4E-05 34.1 8.0 73 126-225 30-104 (217)
227 cd04728 ThiG Thiazole synthase 86.1 8 0.00017 33.7 9.4 74 121-221 129-203 (248)
228 cd02922 FCB2_FMN Flavocytochro 85.9 8.3 0.00018 35.2 10.0 100 98-225 200-302 (344)
229 PRK06843 inosine 5-monophospha 85.9 4.7 0.0001 37.7 8.5 88 124-225 200-288 (404)
230 PF04131 NanE: Putative N-acet 85.9 2.7 5.9E-05 35.2 6.2 76 124-221 97-172 (192)
231 CHL00162 thiG thiamin biosynth 85.5 3.7 8E-05 36.0 7.1 67 132-221 150-217 (267)
232 PRK13125 trpA tryptophan synth 85.3 6.9 0.00015 33.7 8.9 47 10-62 27-78 (244)
233 KOG0538|consensus 85.1 6.8 0.00015 35.3 8.7 95 99-225 211-309 (363)
234 PF01645 Glu_synthase: Conserv 85.0 1.7 3.8E-05 40.0 5.2 54 164-227 184-239 (368)
235 PRK13958 N-(5'-phosphoribosyl) 84.7 7.8 0.00017 32.7 8.7 80 119-224 3-84 (207)
236 TIGR00126 deoC deoxyribose-pho 84.7 10 0.00022 32.2 9.4 103 99-221 38-151 (211)
237 PRK00278 trpC indole-3-glycero 84.5 8.3 0.00018 33.7 9.1 73 127-225 70-143 (260)
238 cd00423 Pterin_binding Pterin 84.4 3.9 8.5E-05 35.6 7.0 85 124-226 21-131 (258)
239 PF00215 OMPdecase: Orotidine 84.2 5 0.00011 34.1 7.4 83 119-225 5-95 (226)
240 PRK09206 pyruvate kinase; Prov 84.1 7.6 0.00016 37.1 9.2 93 114-230 214-320 (470)
241 PRK00208 thiG thiazole synthas 84.1 12 0.00025 32.7 9.6 74 121-221 129-203 (250)
242 cd00952 CHBPH_aldolase Trans-o 84.0 3.7 8E-05 36.8 6.8 82 86-180 46-132 (309)
243 COG0106 HisA Phosphoribosylfor 83.9 8.7 0.00019 33.3 8.7 98 99-227 63-172 (241)
244 PF01645 Glu_synthase: Conserv 83.6 7.2 0.00016 36.0 8.6 95 114-225 203-305 (368)
245 cd00408 DHDPS-like Dihydrodipi 83.2 3.9 8.5E-05 35.7 6.6 60 86-146 35-99 (281)
246 PF00724 Oxidored_FMN: NADH:fl 83.0 2.6 5.6E-05 38.3 5.4 100 113-225 215-323 (341)
247 PRK13307 bifunctional formalde 82.5 3.9 8.4E-05 38.1 6.4 78 123-226 181-261 (391)
248 KOG2550|consensus 82.4 3.2 7E-05 38.7 5.8 89 120-221 294-382 (503)
249 PRK01060 endonuclease IV; Prov 82.4 7.4 0.00016 33.7 8.0 84 129-223 14-110 (281)
250 PRK13397 3-deoxy-7-phosphohept 82.2 6.8 0.00015 34.2 7.5 106 99-229 111-228 (250)
251 cd03315 MLE_like Muconate lact 82.1 12 0.00026 32.4 9.2 80 115-219 75-160 (265)
252 PRK06739 pyruvate kinase; Vali 81.6 16 0.00034 33.6 10.0 93 114-230 207-313 (352)
253 PRK05096 guanosine 5'-monophos 81.6 28 0.00062 31.8 11.4 129 63-221 45-178 (346)
254 cd04726 KGPDC_HPS 3-Keto-L-gul 81.6 11 0.00023 31.0 8.3 82 118-225 4-87 (202)
255 PTZ00300 pyruvate kinase; Prov 81.5 9.6 0.00021 36.2 8.8 93 114-230 188-294 (454)
256 cd06556 ICL_KPHMT Members of t 81.3 11 0.00024 32.6 8.5 94 115-227 74-181 (240)
257 PF01487 DHquinase_I: Type I 3 81.3 11 0.00025 31.7 8.5 83 119-224 2-97 (224)
258 PLN02765 pyruvate kinase 81.1 15 0.00032 35.6 9.9 92 114-230 249-354 (526)
259 PF00701 DHDPS: Dihydrodipicol 80.9 4.2 9E-05 35.8 5.9 63 113-198 69-132 (289)
260 TIGR03128 RuMP_HxlA 3-hexulose 80.8 7.3 0.00016 32.3 7.1 81 119-225 4-86 (206)
261 cd04727 pdxS PdxS is a subunit 80.8 7.4 0.00016 34.5 7.2 76 131-224 19-96 (283)
262 TIGR01361 DAHP_synth_Bsub phos 80.2 3.3 7.2E-05 36.2 5.0 134 34-179 114-259 (260)
263 PRK01222 N-(5'-phosphoribosyl) 80.0 14 0.0003 31.2 8.5 81 118-224 4-86 (210)
264 cd00951 KDGDH 5-dehydro-4-deox 79.9 5.4 0.00012 35.3 6.3 54 114-180 69-123 (289)
265 TIGR01361 DAHP_synth_Bsub phos 79.8 8.7 0.00019 33.6 7.4 107 95-225 117-234 (260)
266 PRK06354 pyruvate kinase; Prov 79.8 13 0.00027 36.6 9.2 93 114-230 220-326 (590)
267 PRK04147 N-acetylneuraminate l 79.6 5.6 0.00012 35.2 6.3 34 114-147 73-107 (293)
268 PLN02363 phosphoribosylanthran 79.3 15 0.00032 32.2 8.7 82 118-225 48-132 (256)
269 cd00739 DHPS DHPS subgroup of 79.3 6.2 0.00013 34.5 6.3 83 125-225 22-130 (257)
270 PRK03170 dihydrodipicolinate s 79.2 5.6 0.00012 35.0 6.2 33 114-146 70-103 (292)
271 CHL00200 trpA tryptophan synth 79.0 11 0.00023 33.2 7.7 94 117-223 17-127 (263)
272 PRK05198 2-dehydro-3-deoxyphos 77.8 4.9 0.00011 35.3 5.2 131 34-179 106-259 (264)
273 COG0274 DeoC Deoxyribose-phosp 77.7 11 0.00023 32.5 7.0 75 123-220 72-158 (228)
274 PRK06843 inosine 5-monophospha 77.5 26 0.00055 32.9 10.1 70 125-221 151-221 (404)
275 cd00954 NAL N-Acetylneuraminic 77.5 7.1 0.00015 34.4 6.3 33 114-146 70-103 (288)
276 TIGR01362 KDO8P_synth 3-deoxy- 77.5 5.2 0.00011 35.1 5.2 133 34-179 98-251 (258)
277 PRK01130 N-acetylmannosamine-6 77.2 22 0.00049 29.8 9.1 97 102-224 106-203 (221)
278 TIGR00683 nanA N-acetylneurami 76.9 8 0.00017 34.3 6.4 32 114-145 70-102 (290)
279 COG0329 DapA Dihydrodipicolina 76.5 7.1 0.00015 34.8 6.0 32 114-145 73-105 (299)
280 TIGR03849 arch_ComA phosphosul 76.4 32 0.00069 29.8 9.7 36 204-239 135-172 (237)
281 COG0821 gcpE 1-hydroxy-2-methy 75.9 16 0.00036 33.2 8.0 77 114-221 19-101 (361)
282 cd08205 RuBisCO_IV_RLP Ribulos 75.8 26 0.00056 32.3 9.6 92 114-221 129-229 (367)
283 TIGR00674 dapA dihydrodipicoli 75.7 8.2 0.00018 34.0 6.2 33 114-146 67-100 (285)
284 TIGR01496 DHPS dihydropteroate 75.5 15 0.00033 32.0 7.7 82 125-224 21-127 (257)
285 PRK03620 5-dehydro-4-deoxygluc 75.5 9.9 0.00022 33.8 6.7 31 114-145 76-107 (303)
286 COG0107 HisF Imidazoleglycerol 75.4 16 0.00036 31.6 7.6 91 114-221 74-174 (256)
287 COG2022 ThiG Uncharacterized e 75.4 8.1 0.00018 33.5 5.7 43 164-221 168-210 (262)
288 TIGR00259 thylakoid_BtpA membr 75.3 16 0.00036 32.0 7.8 72 96-180 184-255 (257)
289 COG2876 AroA 3-deoxy-D-arabino 75.2 12 0.00026 33.1 6.8 97 111-227 149-256 (286)
290 PRK05826 pyruvate kinase; Prov 75.1 24 0.00052 33.7 9.4 95 114-230 215-321 (465)
291 PRK13753 dihydropteroate synth 75.0 13 0.00028 33.0 7.2 82 125-225 23-129 (279)
292 cd00950 DHDPS Dihydrodipicolin 74.8 9.3 0.0002 33.4 6.3 33 114-146 69-102 (284)
293 cd00288 Pyruvate_Kinase Pyruva 74.6 18 0.00038 34.7 8.4 95 114-230 215-321 (480)
294 cd04725 OMP_decarboxylase_like 74.4 12 0.00026 31.6 6.7 73 125-225 9-86 (216)
295 COG2876 AroA 3-deoxy-D-arabino 74.3 18 0.00039 32.0 7.6 132 34-179 134-279 (286)
296 PLN02535 glycolate oxidase 74.1 28 0.0006 32.2 9.3 95 115-226 124-255 (364)
297 PRK13396 3-deoxy-7-phosphohept 73.9 23 0.00049 32.6 8.7 96 114-228 208-314 (352)
298 TIGR01740 pyrF orotidine 5'-ph 73.8 13 0.00028 31.3 6.7 31 196-226 54-87 (213)
299 PRK12457 2-dehydro-3-deoxyphos 73.7 7.3 0.00016 34.5 5.2 136 34-180 112-268 (281)
300 PF00478 IMPDH: IMP dehydrogen 73.0 35 0.00076 31.4 9.6 132 60-221 33-176 (352)
301 PLN02461 Probable pyruvate kin 72.9 28 0.00061 33.6 9.3 93 114-230 235-341 (511)
302 PRK05265 pyridoxine 5'-phospha 72.3 3.1 6.7E-05 36.0 2.5 25 202-226 23-48 (239)
303 PRK13398 3-deoxy-7-phosphohept 72.3 39 0.00085 29.7 9.5 35 114-148 134-171 (266)
304 PF03060 NMO: Nitronate monoox 72.3 26 0.00057 31.6 8.7 57 66-124 13-72 (330)
305 COG0159 TrpA Tryptophan syntha 71.6 40 0.00087 29.7 9.3 87 124-221 28-128 (265)
306 PRK13396 3-deoxy-7-phosphohept 71.5 9.9 0.00021 34.9 5.7 136 34-181 190-338 (352)
307 PF03599 CdhD: CO dehydrogenas 71.4 21 0.00045 33.2 7.8 99 98-229 80-183 (386)
308 PF09370 TIM-br_sig_trns: TIM- 71.2 15 0.00033 32.3 6.5 30 114-143 81-112 (268)
309 PF02679 ComA: (2R)-phospho-3- 71.1 41 0.00088 29.3 9.2 88 129-238 86-183 (244)
310 PRK00507 deoxyribose-phosphate 71.1 38 0.00082 28.9 8.9 99 98-220 103-206 (221)
311 PLN02762 pyruvate kinase compl 70.9 38 0.00082 32.7 9.7 93 114-230 246-352 (509)
312 PLN02979 glycolate oxidase 70.5 37 0.00081 31.3 9.2 98 115-229 121-258 (366)
313 PRK00366 ispG 4-hydroxy-3-meth 70.4 41 0.00089 30.9 9.3 92 102-223 71-181 (360)
314 PLN02623 pyruvate kinase 70.3 29 0.00063 34.0 8.9 94 114-229 319-424 (581)
315 cd03316 MR_like Mandelate race 69.9 31 0.00067 31.1 8.7 86 115-219 127-220 (357)
316 TIGR02313 HpaI-NOT-DapA 2,4-di 69.9 14 0.00031 32.7 6.3 59 87-146 39-102 (294)
317 PTZ00066 pyruvate kinase; Prov 69.9 32 0.0007 33.2 9.0 93 114-230 251-357 (513)
318 PRK06852 aldolase; Validated 69.6 21 0.00046 32.1 7.3 91 114-230 167-272 (304)
319 COG2513 PrpB PEP phosphonomuta 69.4 19 0.00041 32.1 6.8 77 133-223 31-114 (289)
320 cd00377 ICL_PEPM Members of th 69.3 17 0.00038 31.3 6.6 78 133-224 22-106 (243)
321 cd00959 DeoC 2-deoxyribose-5-p 69.1 22 0.00047 29.7 7.0 73 129-221 72-150 (203)
322 PRK05718 keto-hydroxyglutarate 68.9 40 0.00087 28.6 8.6 34 115-148 15-49 (212)
323 TIGR03249 KdgD 5-dehydro-4-deo 68.8 15 0.00032 32.6 6.2 31 114-145 74-105 (296)
324 PRK06247 pyruvate kinase; Prov 68.7 26 0.00057 33.5 8.1 93 114-230 211-317 (476)
325 PF04309 G3P_antiterm: Glycero 68.7 41 0.00088 27.8 8.3 136 43-221 31-168 (175)
326 TIGR03151 enACPred_II putative 68.6 28 0.00061 31.2 8.0 93 101-224 100-192 (307)
327 PRK02227 hypothetical protein; 68.0 27 0.00058 30.3 7.3 76 127-225 8-89 (238)
328 COG3010 NanE Putative N-acetyl 67.9 26 0.00056 29.9 7.0 78 124-223 132-210 (229)
329 PRK05848 nicotinate-nucleotide 67.9 21 0.00046 31.5 6.9 68 125-221 188-256 (273)
330 PRK13957 indole-3-glycerol-pho 67.9 30 0.00065 30.2 7.7 74 128-227 62-136 (247)
331 cd06556 ICL_KPHMT Members of t 67.7 26 0.00056 30.3 7.3 79 132-223 24-110 (240)
332 TIGR00612 ispG_gcpE 1-hydroxy- 67.4 46 0.001 30.4 8.9 82 114-223 72-172 (346)
333 PRK11320 prpB 2-methylisocitra 67.2 22 0.00048 31.7 6.9 79 133-224 30-115 (292)
334 PRK05283 deoxyribose-phosphate 67.1 21 0.00045 31.3 6.6 72 128-220 85-165 (257)
335 PRK09485 mmuM homocysteine met 67.1 20 0.00043 32.0 6.7 35 114-148 181-223 (304)
336 COG0135 TrpF Phosphoribosylant 67.0 27 0.00058 29.6 7.1 65 97-179 142-207 (208)
337 TIGR00190 thiC thiamine biosyn 66.4 26 0.00056 32.8 7.3 20 205-224 142-162 (423)
338 PF00977 His_biosynth: Histidi 66.3 22 0.00049 30.2 6.6 94 100-223 62-168 (229)
339 PLN02591 tryptophan synthase 66.2 31 0.00067 30.1 7.5 85 124-221 13-112 (250)
340 cd07944 DRE_TIM_HOA_like 4-hyd 66.1 46 0.001 29.1 8.7 51 124-177 17-68 (266)
341 PRK13398 3-deoxy-7-phosphohept 65.9 15 0.00033 32.3 5.6 135 34-180 116-262 (266)
342 cd08210 RLP_RrRLP Ribulose bis 65.9 66 0.0014 29.6 10.0 91 114-221 125-224 (364)
343 PRK12595 bifunctional 3-deoxy- 65.8 47 0.001 30.6 8.9 104 97-223 212-325 (360)
344 PRK08673 3-deoxy-7-phosphohept 65.7 43 0.00094 30.5 8.6 108 97-228 187-305 (335)
345 COG0107 HisF Imidazoleglycerol 65.3 29 0.00062 30.2 6.9 69 127-221 30-102 (256)
346 PRK00366 ispG 4-hydroxy-3-meth 65.2 42 0.00092 30.8 8.3 77 114-221 25-107 (360)
347 PF13714 PEP_mutase: Phosphoen 64.7 17 0.00036 31.5 5.5 78 133-224 22-107 (238)
348 PRK13958 N-(5'-phosphoribosyl) 64.5 28 0.00061 29.3 6.8 65 96-179 140-205 (207)
349 PLN03033 2-dehydro-3-deoxyphos 64.1 12 0.00027 33.2 4.6 132 34-180 112-271 (290)
350 PRK13305 sgbH 3-keto-L-gulonat 63.9 35 0.00075 29.1 7.3 82 116-225 5-90 (218)
351 PRK09490 metH B12-dependent me 62.9 31 0.00068 36.9 8.0 80 124-223 381-488 (1229)
352 smart00518 AP2Ec AP endonuclea 62.8 42 0.00092 28.8 7.8 74 131-223 14-105 (273)
353 PRK12595 bifunctional 3-deoxy- 62.7 16 0.00034 33.6 5.3 135 34-180 207-353 (360)
354 PF02662 FlpD: Methyl-viologen 62.7 19 0.00041 27.8 5.0 23 130-153 43-65 (124)
355 PLN02411 12-oxophytodienoate r 62.6 61 0.0013 30.1 9.2 32 192-225 312-344 (391)
356 cd00019 AP2Ec AP endonuclease 62.5 41 0.0009 29.0 7.7 83 127-223 10-106 (279)
357 COG1954 GlpP Glycerol-3-phosph 61.9 69 0.0015 26.5 8.2 75 116-221 97-172 (181)
358 TIGR02321 Pphn_pyruv_hyd phosp 61.6 32 0.0007 30.6 6.9 78 133-224 28-112 (290)
359 PF01070 FMN_dh: FMN-dependent 61.5 17 0.00037 33.3 5.3 97 115-228 110-259 (356)
360 cd00405 PRAI Phosphoribosylant 61.3 40 0.00087 27.9 7.1 80 120-225 2-83 (203)
361 TIGR01769 GGGP geranylgeranylg 61.2 24 0.00052 29.8 5.7 40 127-180 11-51 (205)
362 PF00290 Trp_syntA: Tryptophan 60.9 33 0.00073 30.1 6.8 94 117-222 12-122 (259)
363 PF01964 ThiC: ThiC family; I 60.8 34 0.00074 32.0 7.0 10 215-224 152-161 (420)
364 PRK07226 fructose-bisphosphate 60.5 69 0.0015 27.9 8.7 85 113-229 138-237 (267)
365 PRK11572 copper homeostasis pr 60.1 62 0.0013 28.3 8.2 76 121-223 6-94 (248)
366 PRK00311 panB 3-methyl-2-oxobu 59.9 98 0.0021 27.2 9.5 90 116-223 78-182 (264)
367 cd04729 NanE N-acetylmannosami 59.7 26 0.00056 29.4 5.8 71 131-229 84-159 (219)
368 PF01116 F_bP_aldolase: Fructo 59.7 23 0.00051 31.5 5.7 112 89-226 14-138 (287)
369 TIGR02082 metH 5-methyltetrahy 59.7 39 0.00085 36.0 8.1 80 124-223 365-472 (1178)
370 PRK11840 bifunctional sulfur c 59.5 36 0.00079 30.9 6.8 48 158-221 230-277 (326)
371 PF03932 CutC: CutC family; I 59.4 45 0.00098 28.1 7.1 74 122-222 6-92 (201)
372 TIGR02317 prpB methylisocitrat 59.3 37 0.0008 30.2 6.8 77 134-225 27-111 (285)
373 cd04729 NanE N-acetylmannosami 59.2 61 0.0013 27.1 8.0 85 115-225 124-208 (219)
374 PF04476 DUF556: Protein of un 58.8 57 0.0012 28.2 7.6 73 127-221 8-86 (235)
375 cd06557 KPHMT-like Ketopantoat 58.4 59 0.0013 28.4 7.8 22 203-224 158-180 (254)
376 PF05690 ThiG: Thiazole biosyn 58.3 13 0.00029 32.2 3.7 60 98-175 162-221 (247)
377 cd00953 KDG_aldolase KDG (2-ke 58.3 11 0.00024 33.2 3.3 30 116-145 67-97 (279)
378 PRK13587 1-(5-phosphoribosyl)- 58.0 1.2E+02 0.0026 25.9 9.6 102 97-225 109-223 (234)
379 cd02812 PcrB_like PcrB_like pr 58.0 78 0.0017 27.0 8.4 70 124-221 132-203 (219)
380 PLN02417 dihydrodipicolinate s 57.8 9.6 0.00021 33.5 2.9 32 114-145 70-102 (280)
381 PRK09284 thiamine biosynthesis 57.8 47 0.001 32.3 7.6 22 203-224 295-317 (607)
382 TIGR02319 CPEP_Pphonmut carbox 57.8 41 0.0009 30.1 6.9 78 133-224 29-114 (294)
383 TIGR00612 ispG_gcpE 1-hydroxy- 57.7 66 0.0014 29.4 8.1 77 114-221 17-99 (346)
384 cd00947 TBP_aldolase_IIB Tagat 57.6 40 0.00086 29.9 6.7 74 129-222 150-226 (276)
385 PRK00125 pyrF orotidine 5'-pho 57.5 25 0.00054 31.2 5.4 45 167-223 72-123 (278)
386 cd04723 HisA_HisF Phosphoribos 57.2 1.2E+02 0.0026 25.8 9.6 102 97-226 111-221 (233)
387 COG1830 FbaB DhnA-type fructos 57.2 39 0.00084 29.8 6.4 73 126-230 165-244 (265)
388 PRK09856 fructoselysine 3-epim 57.1 44 0.00095 28.7 6.9 24 128-151 14-38 (275)
389 PRK00278 trpC indole-3-glycero 57.0 1.3E+02 0.0029 26.1 10.5 94 98-227 98-192 (260)
390 PF00682 HMGL-like: HMGL-like 56.6 83 0.0018 26.5 8.5 75 124-221 134-212 (237)
391 PRK01222 N-(5'-phosphoribosyl) 56.6 43 0.00093 28.2 6.6 65 96-180 142-208 (210)
392 PRK07709 fructose-bisphosphate 56.4 42 0.00091 29.9 6.7 75 128-222 157-233 (285)
393 PRK09250 fructose-bisphosphate 56.4 43 0.00092 30.7 6.8 92 126-230 216-325 (348)
394 cd00959 DeoC 2-deoxyribose-5-p 56.2 1E+02 0.0022 25.6 8.7 80 114-219 116-200 (203)
395 TIGR01919 hisA-trpF 1-(5-phosp 55.4 1.1E+02 0.0023 26.5 8.9 102 100-223 63-170 (243)
396 PRK09427 bifunctional indole-3 55.3 52 0.0011 31.3 7.5 80 118-225 258-339 (454)
397 COG1964 Predicted Fe-S oxidore 55.3 29 0.00063 32.9 5.6 49 100-148 93-147 (475)
398 COG5016 Pyruvate/oxaloacetate 55.0 56 0.0012 30.8 7.3 73 124-220 153-229 (472)
399 PF00682 HMGL-like: HMGL-like 54.8 43 0.00093 28.2 6.4 73 125-223 12-88 (237)
400 TIGR01520 FruBisAldo_II_A fruc 54.8 73 0.0016 29.4 8.0 51 125-180 196-249 (357)
401 cd07943 DRE_TIM_HOA 4-hydroxy- 54.8 1.4E+02 0.0031 25.8 10.0 68 100-180 111-182 (263)
402 PLN02424 ketopantoate hydroxym 54.7 1.4E+02 0.0031 27.2 9.8 95 113-224 94-204 (332)
403 PLN02444 HMP-P synthase 54.7 55 0.0012 32.0 7.5 22 203-224 300-322 (642)
404 PRK13352 thiamine biosynthesis 54.6 54 0.0012 30.8 7.2 20 205-224 145-165 (431)
405 TIGR01858 tag_bisphos_ald clas 54.4 45 0.00097 29.6 6.5 74 129-222 155-230 (282)
406 cd07948 DRE_TIM_HCS Saccharomy 54.2 1.5E+02 0.0032 25.9 9.9 54 114-180 125-182 (262)
407 cd03319 L-Ala-DL-Glu_epimerase 54.0 1.2E+02 0.0026 26.8 9.4 31 192-222 227-258 (316)
408 KOG0134|consensus 53.9 40 0.00087 31.4 6.3 86 127-219 174-278 (400)
409 PRK12737 gatY tagatose-bisphos 53.8 50 0.0011 29.4 6.7 74 129-222 157-232 (284)
410 PF00697 PRAI: N-(5'phosphorib 53.7 18 0.00039 30.1 3.7 67 95-176 130-197 (197)
411 COG2022 ThiG Uncharacterized e 53.7 17 0.00038 31.5 3.6 59 99-175 170-228 (262)
412 PRK02412 aroD 3-dehydroquinate 53.7 1.3E+02 0.0029 26.0 9.3 86 117-223 18-117 (253)
413 PRK13587 1-(5-phosphoribosyl)- 53.2 1E+02 0.0022 26.4 8.4 90 99-221 64-167 (234)
414 TIGR03217 4OH_2_O_val_ald 4-hy 53.1 79 0.0017 28.7 8.1 53 125-178 22-75 (333)
415 PRK08227 autoinducer 2 aldolas 52.8 55 0.0012 28.8 6.8 82 114-229 140-232 (264)
416 PRK08673 3-deoxy-7-phosphohept 52.5 23 0.00051 32.2 4.5 135 34-180 182-328 (335)
417 TIGR01769 GGGP geranylgeranylg 52.3 1.1E+02 0.0025 25.7 8.4 72 125-221 132-204 (205)
418 PRK06015 keto-hydroxyglutarate 51.8 1.4E+02 0.0029 25.2 8.7 34 115-148 4-38 (201)
419 PF04412 DUF521: Protein of un 51.5 48 0.001 31.0 6.5 72 125-219 271-352 (400)
420 COG0800 Eda 2-keto-3-deoxy-6-p 50.9 1.3E+02 0.0027 25.7 8.4 37 115-151 13-50 (211)
421 PRK09195 gatY tagatose-bisphos 50.8 58 0.0012 29.0 6.6 74 129-222 157-232 (284)
422 PRK11197 lldD L-lactate dehydr 50.5 32 0.0007 31.9 5.2 36 192-229 244-280 (381)
423 PF01729 QRPTase_C: Quinolinat 50.3 32 0.0007 28.1 4.7 72 119-222 83-155 (169)
424 COG0106 HisA Phosphoribosylfor 50.2 1.2E+02 0.0027 26.3 8.3 105 94-225 105-223 (241)
425 TIGR03569 NeuB_NnaB N-acetylne 50.2 61 0.0013 29.4 6.8 110 93-229 116-230 (329)
426 TIGR01949 AroFGH_arch predicte 50.1 1.2E+02 0.0026 26.1 8.6 84 113-228 135-232 (258)
427 PRK06106 nicotinate-nucleotide 50.0 50 0.0011 29.4 6.1 67 128-226 203-270 (281)
428 COG0434 SgcQ Predicted TIM-bar 49.7 73 0.0016 27.8 6.8 72 133-222 40-115 (263)
429 PLN02493 probable peroxisomal 49.5 33 0.00072 31.7 5.1 98 115-229 122-259 (367)
430 PLN02489 homocysteine S-methyl 49.5 53 0.0012 29.8 6.4 35 114-148 208-250 (335)
431 TIGR00167 cbbA ketose-bisphosp 49.5 69 0.0015 28.5 7.0 73 129-221 160-235 (288)
432 KOG3111|consensus 48.9 65 0.0014 27.3 6.1 84 119-224 9-96 (224)
433 PRK12457 2-dehydro-3-deoxyphos 48.6 59 0.0013 28.9 6.3 104 98-221 118-236 (281)
434 PRK08610 fructose-bisphosphate 48.6 68 0.0015 28.6 6.8 75 128-222 157-233 (286)
435 PRK12738 kbaY tagatose-bisphos 48.5 73 0.0016 28.4 6.9 75 128-222 156-232 (286)
436 COG0069 GltB Glutamate synthas 48.3 40 0.00087 32.3 5.5 50 165-224 285-336 (485)
437 cd00453 FTBP_aldolase_II Fruct 48.3 67 0.0014 29.4 6.7 29 94-122 17-45 (340)
438 PRK08645 bifunctional homocyst 48.0 63 0.0014 31.8 7.1 49 115-179 166-221 (612)
439 PRK13803 bifunctional phosphor 47.5 62 0.0013 31.9 6.9 70 96-180 146-215 (610)
440 TIGR03217 4OH_2_O_val_ald 4-hy 47.5 2.1E+02 0.0045 25.9 9.9 13 137-149 98-110 (333)
441 cd04736 MDH_FMN Mandelate dehy 47.3 1.3E+02 0.0029 27.6 8.7 37 115-151 116-153 (361)
442 PRK12857 fructose-1,6-bisphosp 47.1 76 0.0016 28.2 6.8 74 129-222 157-232 (284)
443 PRK06978 nicotinate-nucleotide 47.1 59 0.0013 29.1 6.1 63 128-222 214-277 (294)
444 TIGR01093 aroD 3-dehydroquinat 46.8 1.8E+02 0.0038 24.6 9.6 87 117-224 2-101 (228)
445 PF14871 GHL6: Hypothetical gl 46.6 38 0.00082 26.5 4.3 49 131-180 4-56 (132)
446 PRK06543 nicotinate-nucleotide 46.3 62 0.0013 28.8 6.1 63 128-222 202-265 (281)
447 PRK05283 deoxyribose-phosphate 46.2 66 0.0014 28.2 6.2 72 128-220 148-227 (257)
448 PRK06806 fructose-bisphosphate 45.9 72 0.0016 28.3 6.5 82 93-221 21-103 (281)
449 PRK07428 nicotinate-nucleotide 45.7 1E+02 0.0022 27.5 7.4 67 126-221 203-270 (288)
450 PRK13111 trpA tryptophan synth 45.7 1.2E+02 0.0026 26.5 7.7 94 117-221 14-123 (258)
451 COG1908 FrhD Coenzyme F420-red 45.7 1.3E+02 0.0027 23.5 6.8 29 131-161 45-73 (132)
452 CHL00162 thiG thiamin biosynth 45.6 69 0.0015 28.2 6.1 44 99-148 177-220 (267)
453 cd03332 LMO_FMN L-Lactate 2-mo 45.6 38 0.00083 31.4 4.9 47 165-228 240-287 (383)
454 COG0502 BioB Biotin synthase a 45.5 44 0.00095 30.5 5.1 73 125-221 85-160 (335)
455 PRK14725 pyruvate kinase; Prov 45.5 1.4E+02 0.003 29.6 8.8 86 114-222 473-574 (608)
456 cd00946 FBP_aldolase_IIA Class 45.3 1.2E+02 0.0025 27.9 7.8 87 125-221 184-274 (345)
457 PRK01130 N-acetylmannosamine-6 45.1 58 0.0013 27.2 5.6 43 99-147 161-203 (221)
458 cd00331 IGPS Indole-3-glycerol 44.7 1.8E+02 0.0039 24.1 9.6 93 100-228 61-154 (217)
459 PF04481 DUF561: Protein of un 44.3 1.7E+02 0.0037 25.3 8.1 70 117-221 17-87 (242)
460 PRK06559 nicotinate-nucleotide 44.2 65 0.0014 28.8 5.9 64 127-222 205-269 (290)
461 TIGR03569 NeuB_NnaB N-acetylne 44.2 1.1E+02 0.0023 27.9 7.5 46 163-224 119-171 (329)
462 PRK06801 hypothetical protein; 43.9 98 0.0021 27.5 7.0 75 128-222 157-233 (286)
463 COG0284 PyrF Orotidine-5'-phos 43.9 1.6E+02 0.0034 25.5 8.1 81 117-225 14-99 (240)
464 PRK07534 methionine synthase I 43.7 1.4E+02 0.0029 27.2 8.1 36 113-148 169-213 (336)
465 PF01116 F_bP_aldolase: Fructo 43.6 66 0.0014 28.6 5.9 75 128-221 156-234 (287)
466 PRK12330 oxaloacetate decarbox 42.8 1.4E+02 0.0031 28.8 8.4 73 124-220 152-230 (499)
467 COG0821 gcpE 1-hydroxy-2-methy 42.8 2.6E+02 0.0056 25.7 9.4 91 101-222 64-173 (361)
468 TIGR00510 lipA lipoate synthas 42.7 1.2E+02 0.0025 27.3 7.4 53 165-221 188-241 (302)
469 cd07939 DRE_TIM_NifV Streptomy 42.4 2.2E+02 0.0048 24.4 9.7 44 124-180 136-180 (259)
470 PRK08195 4-hyroxy-2-oxovalerat 42.2 2.7E+02 0.0057 25.3 10.3 52 116-180 130-185 (337)
471 PRK07535 methyltetrahydrofolat 42.2 19 0.00041 31.6 2.2 41 10-63 34-74 (261)
472 cd07937 DRE_TIM_PC_TC_5S Pyruv 42.1 2.4E+02 0.0051 24.7 9.9 44 124-180 146-190 (275)
473 TIGR00078 nadC nicotinate-nucl 42.0 66 0.0014 28.2 5.6 61 129-221 188-249 (265)
474 PRK09016 quinolinate phosphori 41.9 68 0.0015 28.8 5.7 71 115-222 209-280 (296)
475 PRK07709 fructose-bisphosphate 41.9 2.3E+02 0.0051 25.1 9.1 102 115-229 78-183 (285)
476 TIGR03586 PseI pseudaminic aci 41.8 1.1E+02 0.0023 27.9 7.0 105 93-222 117-222 (327)
477 cd04728 ThiG Thiazole synthase 41.7 37 0.0008 29.6 3.9 44 99-148 163-206 (248)
478 TIGR02127 pyrF_sub2 orotidine 41.6 66 0.0014 28.2 5.5 31 193-223 86-122 (261)
479 TIGR01182 eda Entner-Doudoroff 41.5 2.2E+02 0.0047 24.0 8.7 34 115-148 8-42 (204)
480 COG0469 PykF Pyruvate kinase [ 41.4 1.8E+02 0.004 27.9 8.8 106 102-230 205-323 (477)
481 PRK08195 4-hyroxy-2-oxovalerat 41.3 1.9E+02 0.0042 26.2 8.7 52 125-177 23-75 (337)
482 TIGR00259 thylakoid_BtpA membr 41.1 2.2E+02 0.0047 25.0 8.6 100 114-228 79-184 (257)
483 PRK13586 1-(5-phosphoribosyl)- 41.1 1.8E+02 0.0039 24.9 8.1 91 100-223 62-167 (232)
484 PLN02363 phosphoribosylanthran 41.1 99 0.0022 27.0 6.5 53 115-180 200-254 (256)
485 PRK09195 gatY tagatose-bisphos 41.0 1.1E+02 0.0023 27.3 6.8 44 93-136 21-69 (284)
486 TIGR01302 IMP_dehydrog inosine 40.8 1.4E+02 0.0031 28.1 8.0 70 125-221 222-292 (450)
487 PRK13209 L-xylulose 5-phosphat 40.7 1.1E+02 0.0025 26.2 7.0 91 128-225 22-122 (283)
488 PRK08610 fructose-bisphosphate 40.6 2.6E+02 0.0056 24.9 9.1 108 115-237 78-189 (286)
489 PRK05692 hydroxymethylglutaryl 40.6 2.6E+02 0.0056 24.7 10.0 73 125-220 153-229 (287)
490 PRK07998 gatY putative fructos 40.2 97 0.0021 27.6 6.4 73 128-221 154-228 (283)
491 PRK14114 1-(5-phosphoribosyl)- 40.2 2.4E+02 0.0052 24.2 9.4 88 99-221 62-163 (241)
492 PTZ00413 lipoate synthase; Pro 40.2 1.9E+02 0.0042 27.0 8.4 45 166-221 276-329 (398)
493 PF00224 PK: Pyruvate kinase, 40.2 62 0.0013 29.5 5.3 92 114-229 217-322 (348)
494 cd03174 DRE_TIM_metallolyase D 40.1 1.3E+02 0.0029 25.5 7.2 76 125-223 17-95 (265)
495 PF04551 GcpE: GcpE protein; 39.2 87 0.0019 28.8 6.0 67 114-204 14-85 (359)
496 PRK05742 nicotinate-nucleotide 39.1 94 0.002 27.5 6.1 62 129-222 199-261 (277)
497 PRK15108 biotin synthase; Prov 39.1 1.7E+02 0.0037 26.6 8.0 78 125-225 77-156 (345)
498 PRK13397 3-deoxy-7-phosphohept 38.9 1.6E+02 0.0034 25.8 7.3 47 163-225 108-159 (250)
499 cd01572 QPRTase Quinolinate ph 38.8 89 0.0019 27.4 6.0 62 130-223 193-255 (268)
500 PRK00915 2-isopropylmalate syn 38.8 1.1E+02 0.0024 29.4 7.1 77 125-225 24-102 (513)
No 1
>KOG2335|consensus
Probab=100.00 E-value=5.3e-35 Score=258.96 Aligned_cols=156 Identities=33% Similarity=0.537 Sum_probs=138.0
Q ss_pred cccCCCccccccCchhhhhhhhcccceeeeCChhhHHH-h----------hhcccCCCCceeEEeecCCHHHHHHHHHHH
Q psy7344 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTE-L----------GFKTRSHMCGHSLMFCGNDSKNLTEAAKLA 136 (240)
Q Consensus 68 ~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~-i----------~~~~~~~~~pvivqi~g~d~~~~~~aa~~l 136 (240)
++|||+++++++|| +++.+ ||+.+.. +|||.. . .+++++.+.|+|+||+|+|++.+.+||+++
T Consensus 22 i~APMvd~S~l~fR--~L~R~---y~~~l~y-TpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~~ndp~~ll~Aa~lv 95 (358)
T KOG2335|consen 22 IVAPMVDYSELAFR--RLVRL---YGADLLY-TPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFGGNDPENLLKAARLV 95 (358)
T ss_pred ccCCcccccHHHHH--HHHHH---hCCceEe-chHHHHHHHhcCccchhhhcccCCCCCceEEEEcCCCHHHHHHHHHHh
Confidence 78999999999998 55544 5665554 455442 1 245567789999999999999999999999
Q ss_pred ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee----hhcHHHHHHHH
Q psy7344 137 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM----VAKRGHYGAYL 212 (240)
Q Consensus 137 e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r----~~~~~~~~~~l 212 (240)
+..||+||||+|||+.++.++|||+.|+.+|+++.++++.++.. ++.|||+|+| .++|+++++++
T Consensus 96 ~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~-----------l~~pVs~KIRI~~d~~kTvd~ak~~ 164 (358)
T KOG2335|consen 96 QPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRAN-----------LNVPVSVKIRIFVDLEKTVDYAKML 164 (358)
T ss_pred hhhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhh-----------cCCCeEEEEEecCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 7889999999 46799999999
Q ss_pred hC-CCCeEEEecccccccCCCCCCCCCCC
Q psy7344 213 QD-DWPLLTELGKMAMLVGILDNTGSWTP 240 (240)
Q Consensus 213 ~~-G~~~itih~R~~~~~~~~~~~adw~~ 240 (240)
++ |++++||||||+.|++..++++||++
T Consensus 165 e~aG~~~ltVHGRtr~~kg~~~~pad~~~ 193 (358)
T KOG2335|consen 165 EDAGVSLLTVHGRTREQKGLKTGPADWEA 193 (358)
T ss_pred HhCCCcEEEEecccHHhcCCCCCCcCHHH
Confidence 99 99999999999999998889999974
No 2
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.8e-31 Score=239.43 Aligned_cols=162 Identities=23% Similarity=0.235 Sum_probs=131.7
Q ss_pred ceeecccccccCCCccccccCchhhhhhhhcccceeeeCChhhHHHh---------h--hcccCCCCceeEEeecCCHHH
Q psy7344 60 PLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTEL---------G--FKTRSHMCGHSLMFCGNDSKN 128 (240)
Q Consensus 60 p~~vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~i---------~--~~~~~~~~pvivqi~g~d~~~ 128 (240)
+...+.+.++|||.+++|.+|| .+....|.+ .+.. +|+++.- . ....+.+.|+++||+|+||+.
T Consensus 6 ~~~~~~~~~lAPM~gvtd~~fR--~l~~~~ga~--~~~~-TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsdp~~ 80 (323)
T COG0042 6 LIELRNRVILAPMAGVTDLPFR--RLARELGAY--DLLY-TEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDPEL 80 (323)
T ss_pred cccccCcEEEecCCCCccHHHH--HHHHHhCCC--ceEE-EccEEEhhhccCCcchhhhcCcCCCCCCEEEEecCCCHHH
Confidence 4445667899999999999998 555543443 2221 2333321 0 111123579999999999999
Q ss_pred HHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC-CeeeEEeee--hh-
Q psy7344 129 LTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN-DINIGCPQM--VA- 203 (240)
Q Consensus 129 ~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~-~~pvsvK~r--~~- 203 (240)
+.++++.+++ ++|+||||+|||++.+.++|.|++||.+|+++.+|+++++++ + ++|||||+| ++
T Consensus 81 l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~a-----------v~~iPVTVKiRlG~d~ 149 (323)
T COG0042 81 LAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEA-----------VGDIPVTVKIRLGWDD 149 (323)
T ss_pred HHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHh-----------hCCCCeEEEEecccCc
Confidence 9999999976 789999999999999999999999999999999999999999 6 599999999 32
Q ss_pred -c--HHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 204 -K--RGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 204 -~--~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
+ ..++++.+++ |+++|||||||+.|+| .+++||+
T Consensus 150 ~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y--~~~ad~~ 187 (323)
T COG0042 150 DDILALEIARILEDAGADALTVHGRTRAQGY--LGPADWD 187 (323)
T ss_pred ccccHHHHHHHHHhcCCCEEEEecccHHhcC--CCccCHH
Confidence 2 5789999999 9999999999999996 6889997
No 3
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.97 E-value=4.6e-31 Score=235.79 Aligned_cols=154 Identities=21% Similarity=0.311 Sum_probs=108.8
Q ss_pred cccCCCccccccCchhhhhhhhcccceeeeCChhhHHH--h---------hhcccCCCCceeEEeecCCHHHHHHHHHHH
Q psy7344 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTE--L---------GFKTRSHMCGHSLMFCGNDSKNLTEAAKLA 136 (240)
Q Consensus 68 ~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~--i---------~~~~~~~~~pvivqi~g~d~~~~~~aa~~l 136 (240)
++|||++++|++|| ..+..+|..+.+. +|+++. + .....+.+.|+++||+|+|++.+.++++++
T Consensus 1 ~LAPM~g~td~~fR--~l~~~~g~~~~~~---temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~ 75 (309)
T PF01207_consen 1 ILAPMAGVTDLPFR--RLCREFGADDLTY---TEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIV 75 (309)
T ss_dssp -E---TTTSSHHHH--HHHHCCTSSSBEE----S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHH
T ss_pred CccCCCCCchHHHH--HHHHHHCCCeEEE---cCCEEECcccccccceeecccccccccceeEEEeeccHHHHHHHHHhh
Confidence 47999999999998 6665554432222 233321 1 111223347999999999999999999999
Q ss_pred cc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh--h----cHHHHH
Q psy7344 137 EP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV--A----KRGHYG 209 (240)
Q Consensus 137 e~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~--~----~~~~~~ 209 (240)
.+ ++|+||||+|||++.+.++|+|++||.||+.+.+|+++++++ +++|||+|+|+ + ++.+++
T Consensus 76 ~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~-----------~~~pvsvKiR~g~~~~~~~~~~~~ 144 (309)
T PF01207_consen 76 AELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKA-----------VPIPVSVKIRLGWDDSPEETIEFA 144 (309)
T ss_dssp CCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH------------SSEEEEEEESECT--CHHHHHHH
T ss_pred hccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcc-----------cccceEEecccccccchhHHHHHH
Confidence 88 899999999999999999999999999999999999999998 78999999993 2 479999
Q ss_pred HHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 210 AYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 210 ~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
+.+++ |+++|||||||+.|+| ++++||+
T Consensus 145 ~~l~~~G~~~i~vH~Rt~~q~~--~~~a~w~ 173 (309)
T PF01207_consen 145 RILEDAGVSAITVHGRTRKQRY--KGPADWE 173 (309)
T ss_dssp HHHHHTT--EEEEECS-TTCCC--TS---HH
T ss_pred HHhhhcccceEEEecCchhhcC--CcccchH
Confidence 99999 9999999999999995 7899997
No 4
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.95 E-value=3.4e-28 Score=217.78 Aligned_cols=155 Identities=18% Similarity=0.233 Sum_probs=122.0
Q ss_pred ccccCCCccccccCchhhhhhhhcccceeee---CChhhHHH---hhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-C
Q psy7344 67 FIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ---DDWPLLTE---LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-H 139 (240)
Q Consensus 67 ~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~---~d~eli~~---i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~ 139 (240)
.++|||++++|++|| .++..+|..+.+.+ ....++.. -.....+.+.|+++||+|+|++++.++++.+++ +
T Consensus 3 ~~lAPM~g~Td~~fR--~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g 80 (318)
T TIGR00742 3 FSVAPMLDWTDRHFR--YFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLGGSDPNDLAKCAKIAEKRG 80 (318)
T ss_pred EEEECCCCCcCHHHH--HHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEccCCHHHHHHHHHHHHhCC
Confidence 478999999999998 55555443222111 01122211 122233456899999999999999999999976 7
Q ss_pred CCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh--------hcHHHHHHH
Q psy7344 140 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV--------AKRGHYGAY 211 (240)
Q Consensus 140 ~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~--------~~~~~~~~~ 211 (240)
+|+||||+|||++.+.++++|++|+.+|+++.+|+++++++ .++|||||+|+ +++.++++.
T Consensus 81 ~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~-----------~~~PVsvKiR~g~~~~~~~~~~~~~~~~ 149 (318)
T TIGR00742 81 YDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEA-----------VNIPVTVKHRIGIDPLDSYEFLCDFVEI 149 (318)
T ss_pred CCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHH-----------hCCCeEEEEecCCCCcchHHHHHHHHHH
Confidence 99999999999999899999999999999999999999998 68899999994 245688999
Q ss_pred HhC-CCCeEEEecccc-cccCCCCCCC
Q psy7344 212 LQD-DWPLLTELGKMA-MLVGILDNTG 236 (240)
Q Consensus 212 l~~-G~~~itih~R~~-~~~~~~~~~a 236 (240)
+++ |+++|+||+||+ .|. |++.+
T Consensus 150 l~~~G~~~itvHgRt~~~qg--~sg~~ 174 (318)
T TIGR00742 150 VSGKGCQNFIVHARKAWLSG--LSPKE 174 (318)
T ss_pred HHHcCCCEEEEeCCchhhcC--CCccc
Confidence 999 999999999998 444 45544
No 5
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.94 E-value=4.4e-27 Score=210.18 Aligned_cols=157 Identities=16% Similarity=0.141 Sum_probs=125.2
Q ss_pred ccccCCCccccccCchhhhhhhhcccceeeeCChhhHHH------------hhh--c---ccCCCCceeEEeecCCHHHH
Q psy7344 67 FIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTE------------LGF--K---TRSHMCGHSLMFCGNDSKNL 129 (240)
Q Consensus 67 ~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~------------i~~--~---~~~~~~pvivqi~g~d~~~~ 129 (240)
.++|||++++|.+|| ..+..+|+.+.+. +|+++. +.. . ..+.+.|+++||+|+|++++
T Consensus 3 ~~lAPMag~td~~fR--~l~~~~g~~~~~~---temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~~p~~~ 77 (312)
T PRK10550 3 VLLAPMEGVLDSLVR--ELLTEVNDYDLCI---TEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQYPQWL 77 (312)
T ss_pred eEEECCCCCcCHHHH--HHHHHhCCCCEEE---eCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccCCHHHH
Confidence 578999999999998 5556555322222 122221 110 0 22345799999999999999
Q ss_pred HHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh-----h
Q psy7344 130 TEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV-----A 203 (240)
Q Consensus 130 ~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~-----~ 203 (240)
.++|+.+++ ++|+||||+|||++.+.+.|.|++|+.+|+.+.+|++++++.+ +.++|||+|+|+ +
T Consensus 78 ~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~---------~~~~pVsvKiR~g~~~~~ 148 (312)
T PRK10550 78 AENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAV---------PAHLPVTVKVRLGWDSGE 148 (312)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhc---------CCCcceEEEEECCCCCch
Confidence 999998865 8999999999999999999999999999999999999999972 015899999993 2
Q ss_pred cHHHHHHHHhC-CCCeEEEecccccccCCCCCCC-CCC
Q psy7344 204 KRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTG-SWT 239 (240)
Q Consensus 204 ~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~a-dw~ 239 (240)
.+.++++.+++ |+|.|+||+||+.|+| ++++ ||+
T Consensus 149 ~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y--~g~~~~~~ 184 (312)
T PRK10550 149 RKFEIADAVQQAGATELVVHGRTKEDGY--RAEHINWQ 184 (312)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCccCC--CCCcccHH
Confidence 47899999999 9999999999999974 6875 995
No 6
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.94 E-value=5.9e-27 Score=210.32 Aligned_cols=158 Identities=19% Similarity=0.209 Sum_probs=126.7
Q ss_pred ecccccccCCCccccccCchhhhhhhhcccceeeeCChhhHHH-----------hhhcccCCCCceeEEeecCCHHHHHH
Q psy7344 63 MGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTE-----------LGFKTRSHMCGHSLMFCGNDSKNLTE 131 (240)
Q Consensus 63 vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~-----------i~~~~~~~~~pvivqi~g~d~~~~~~ 131 (240)
++.+.++|||++++|++|| ..+..+| +.+.. +|+++. ......+...|+++||+|+|++++.+
T Consensus 8 ~~~~~~lAPM~g~td~~fR--~l~~~~g---~~~~~-temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~~~~ 81 (321)
T PRK10415 8 LRNRLIAAPMAGITDRPFR--TLCYEMG---AGLTV-SEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMAD 81 (321)
T ss_pred CCCCEEecCCCCCCcHHHH--HHHHHHC---CCEEE-EccEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCHHHHHH
Confidence 4456789999999999998 5555443 32211 122221 11111223468899999999999999
Q ss_pred HHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--hh----c
Q psy7344 132 AAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM--VA----K 204 (240)
Q Consensus 132 aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r--~~----~ 204 (240)
+++.+++ ++|+||||+|||++.+.+.|.|++|+.||+.+.+++++++++ +++||++|+| ++ +
T Consensus 82 aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a-----------~d~pv~vKiR~G~~~~~~~ 150 (321)
T PRK10415 82 AARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA-----------VDVPVTLKIRTGWAPEHRN 150 (321)
T ss_pred HHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHh-----------cCCceEEEEEccccCCcch
Confidence 9998754 899999999999999899999999999999999999999988 7889999999 32 4
Q ss_pred HHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 205 RGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 205 ~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
+.++++.+++ |+++|++|+||+.|.| +|.+||+
T Consensus 151 ~~~~a~~le~~G~d~i~vh~rt~~~~~--~G~a~~~ 184 (321)
T PRK10415 151 CVEIAQLAEDCGIQALTIHGRTRACLF--NGEAEYD 184 (321)
T ss_pred HHHHHHHHHHhCCCEEEEecCcccccc--CCCcChH
Confidence 7899999999 9999999999999984 7999996
No 7
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.91 E-value=2.5e-24 Score=194.23 Aligned_cols=150 Identities=20% Similarity=0.230 Sum_probs=118.6
Q ss_pred ccccccCCCccccccCchhhhhhhhcccc-eee--eCChhhHHH---hhhcccCCCCceeEEeecCCHHHHHHHHHHHcc
Q psy7344 65 PLFIAEPHCDGIDINIGCPQMVAKRGHYG-AYL--QDDWPLLTE---LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP 138 (240)
Q Consensus 65 ~~~~lap~~~~~dl~~gC~~~i~~~g~~g-a~l--~~d~eli~~---i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~ 138 (240)
.+.++|||++++|++|| ..+..+|... .|. .....++.. -.....+.+.|+++||+|+|++.+.++|+.+++
T Consensus 11 ~~~~lAPM~g~td~~fR--~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~ 88 (333)
T PRK11815 11 RRFSVAPMMDWTDRHCR--YFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLGGSDPADLAEAAKLAED 88 (333)
T ss_pred CCEEEeCCCCCcCHHHH--HHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEeCCCHHHHHHHHHHHHh
Confidence 35688999999999998 5555444311 222 011122221 112223456799999999999999999999876
Q ss_pred -CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh--------hcHHHHH
Q psy7344 139 -HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV--------AKRGHYG 209 (240)
Q Consensus 139 -~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~--------~~~~~~~ 209 (240)
|+|+||||+|||+....+.++|++|+.+|+.+.+|++++++. .++||++|+|+ .++.+++
T Consensus 89 ~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~-----------v~~pVsvKiR~g~~~~~t~~~~~~~~ 157 (333)
T PRK11815 89 WGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDA-----------VSIPVTVKHRIGIDDQDSYEFLCDFV 157 (333)
T ss_pred cCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHH-----------cCCceEEEEEeeeCCCcCHHHHHHHH
Confidence 799999999999998888999999999999999999999998 67899999993 2357899
Q ss_pred HHHhC-CCCeEEEeccccc
Q psy7344 210 AYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 210 ~~l~~-G~~~itih~R~~~ 227 (240)
+.+++ |+++|++|+||+.
T Consensus 158 ~~l~~aG~d~i~vh~Rt~~ 176 (333)
T PRK11815 158 DTVAEAGCDTFIVHARKAW 176 (333)
T ss_pred HHHHHhCCCEEEEcCCchh
Confidence 99999 9999999999984
No 8
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=8.6e-25 Score=196.23 Aligned_cols=151 Identities=25% Similarity=0.288 Sum_probs=119.4
Q ss_pred cccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccC-CCceeecccccc-cCCCccccc-----cC
Q psy7344 8 RIETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK-NGPLFMGPLFIA-EPHCDGIDI-----NI 80 (240)
Q Consensus 8 ~~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~-~~p~~vk~~~~l-ap~~~~~dl-----~~ 80 (240)
++..+.++|+||||||||++||+++++||+||++|+++.+||.+++ ++. +.|+|||.+.-. .+.....++ ..
T Consensus 86 ~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~-~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~ 164 (323)
T COG0042 86 KIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMV-EAVGDIPVTVKIRLGWDDDDILALEIARILEDA 164 (323)
T ss_pred HHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHH-HhhCCCCeEEEEecccCcccccHHHHHHHHHhc
Confidence 4567778999999999999999999999999999999999999999 577 499999965432 221111111 55
Q ss_pred chhhhhhhhccccee--e-eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhc
Q psy7344 81 GCPQMVAKRGHYGAY--L-QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKR 156 (240)
Q Consensus 81 gC~~~i~~~g~~ga~--l-~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~ 156 (240)
| .+.+++|||+... . ..+|+.|++++..+++ .|++.+ +|+.+..++.++++. |||+||+++|
T Consensus 165 g-~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~--ipvi~N---GdI~s~~~a~~~l~~tg~DgVMigRg-------- 230 (323)
T COG0042 165 G-ADALTVHGRTRAQGYLGPADWDYIKELKEAVPS--IPVIAN---GDIKSLEDAKEMLEYTGADGVMIGRG-------- 230 (323)
T ss_pred C-CCEEEEecccHHhcCCCccCHHHHHHHHHhCCC--CeEEeC---CCcCCHHHHHHHHHhhCCCEEEEcHH--------
Confidence 5 4788999999883 3 4689999999877643 566655 999999999999987 7999999999
Q ss_pred ccccccccCCHHHHHHHHHHhhhc
Q psy7344 157 GHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 157 ~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
.+.+|++++++ +.+..+
T Consensus 231 ------a~~nP~l~~~i-~~~~~g 247 (323)
T COG0042 231 ------ALGNPWLFRQI-DYLETG 247 (323)
T ss_pred ------HccCCcHHHHH-HHhhcC
Confidence 35799999888 544443
No 9
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.90 E-value=1.6e-23 Score=187.97 Aligned_cols=161 Identities=20% Similarity=0.246 Sum_probs=128.2
Q ss_pred ecccccccCCCccccccCchhhhhhhhcccceeeeC---ChhhHHHh-----hhcccCCCCceeEEeecCCHHHHHHHHH
Q psy7344 63 MGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD---DWPLLTEL-----GFKTRSHMCGHSLMFCGNDSKNLTEAAK 134 (240)
Q Consensus 63 vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~---d~eli~~i-----~~~~~~~~~pvivqi~g~d~~~~~~aa~ 134 (240)
++.+.++|||++++|++|| .++..+| .+.+.+. ...++... .....+.+.|+++||+|++++++.++++
T Consensus 6 ~~~~l~lAPm~~~t~~~fR--~l~~~~g-~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~~~~aa~ 82 (319)
T TIGR00737 6 LKSRVVLAPMAGVTDSPFR--RLVAEYG-AGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMAEAAK 82 (319)
T ss_pred CCCCEEecCCCCCCcHHHH--HHHHHHC-CCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHHHHHHHH
Confidence 3456789999999999998 6666555 2332211 11121111 1122344689999999999999999999
Q ss_pred HHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh--h----cHHH
Q psy7344 135 LAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV--A----KRGH 207 (240)
Q Consensus 135 ~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~--~----~~~~ 207 (240)
.+++ |+|+||||+|||+....+++.|+.++.+|+.+.+|++++++. +++||++|+|. + ++.+
T Consensus 83 ~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~-----------~~~pv~vKir~g~~~~~~~~~~ 151 (319)
T TIGR00737 83 INEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDA-----------VDIPVTVKIRIGWDDAHINAVE 151 (319)
T ss_pred HHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhh-----------cCCCEEEEEEcccCCCcchHHH
Confidence 9876 899999999999988788889999999999999999999998 67999999993 2 4679
Q ss_pred HHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 208 YGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 208 ~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
+++.+++ |+|+|++|+|++.+.| +++++|+
T Consensus 152 ~a~~l~~~G~d~i~vh~r~~~~~~--~~~~~~~ 182 (319)
T TIGR00737 152 AARIAEDAGAQAVTLHGRTRAQGY--SGEANWD 182 (319)
T ss_pred HHHHHHHhCCCEEEEEcccccccC--CCchhHH
Confidence 9999999 9999999999998874 6888885
No 10
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.86 E-value=1.4e-21 Score=168.20 Aligned_cols=109 Identities=13% Similarity=0.078 Sum_probs=94.9
Q ss_pred CCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 113 HMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 113 ~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
.+.|+++||+|+|++++.++++.+++.+++||||+|||+..+.+.|.|++|+.||+.+.++++++++ .
T Consensus 71 ~~~p~~vqi~g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~------------~ 138 (233)
T cd02911 71 SNVLVGVNVRSSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE------------T 138 (233)
T ss_pred cCCeEEEEecCCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh------------c
Confidence 3569999999999999999999998878999999999999988999999999999999999999986 3
Q ss_pred CeeeEEeee--h-hcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 193 DINIGCPQM--V-AKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 193 ~~pvsvK~r--~-~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
++||++|+| + .++.++++.+++ |+|.| |.++..+. ..+||+
T Consensus 139 ~~pVsvKir~g~~~~~~~la~~l~~aG~d~i--hv~~~~~g----~~ad~~ 183 (233)
T cd02911 139 GVPVSVKIRAGVDVDDEELARLIEKAGADII--HVDAMDPG----NHADLK 183 (233)
T ss_pred CCCEEEEEcCCcCcCHHHHHHHHHHhCCCEE--EECcCCCC----CCCcHH
Confidence 689999999 4 478999999999 99975 55554432 367885
No 11
>KOG2333|consensus
Probab=99.86 E-value=1.2e-21 Score=178.62 Aligned_cols=156 Identities=19% Similarity=0.214 Sum_probs=124.7
Q ss_pred ecccccccCCCccccccCchhhhhhhhcccceeeeC---------------ChhhHHHhhhcccCCCCceeEEeecCCHH
Q psy7344 63 MGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD---------------DWPLLTELGFKTRSHMCGHSLMFCGNDSK 127 (240)
Q Consensus 63 vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~---------------d~eli~~i~~~~~~~~~pvivqi~g~d~~ 127 (240)
...+++++|....-.++|| .+++ .+||..+- .|.|+++. ..+.-+-|||+|+.++
T Consensus 263 ~r~K~~LaPLTTvGNLPFR---RlCk--~lGADvTcgEMA~~tpLlqG~~sEWALlkRH-----~sEdiFGVQlag~~pd 332 (614)
T KOG2333|consen 263 FRDKKYLAPLTTVGNLPFR---RLCK--KLGADVTCGEMAMATPLLQGTASEWALLKRH-----QSEDIFGVQLAGSKPD 332 (614)
T ss_pred cccceeeccccccCCccHH---HHHH--HhCCccchhHHHHHHHHhcccchhhhhhhhc-----CcccceeeEeccCChH
Confidence 3457889999999999997 4543 35553321 23333321 1223588999999999
Q ss_pred HHHHHHHHHcc--CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh---
Q psy7344 128 NLTEAAKLAEP--HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV--- 202 (240)
Q Consensus 128 ~~~~aa~~le~--~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~--- 202 (240)
++.++++.+.+ -+|.||||+|||...+.+.|.|++||.+|..+.++++.+.... -.+|+|||+|.
T Consensus 333 t~~kaaq~i~e~~~VDFIDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs----------~~iPiTVKiRTG~k 402 (614)
T KOG2333|consen 333 TAAKAAQVIAETCDVDFIDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVS----------GDIPITVKIRTGTK 402 (614)
T ss_pred HHHHHHHHHHhhcceeeeeccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhc----------cCCCeEEEEecccc
Confidence 99999999965 4799999999999999999999999999999999999988861 35699999993
Q ss_pred ---hcHHHHHHHHh-C-CCCeEEEecccccccCCCCCCCCCCC
Q psy7344 203 ---AKRGHYGAYLQ-D-DWPLLTELGKMAMLVGILDNTGSWTP 240 (240)
Q Consensus 203 ---~~~~~~~~~l~-~-G~~~itih~R~~~~~~~~~~~adw~~ 240 (240)
....++...+. + |+++||+|||.|+|+| +..|||++
T Consensus 403 eg~~~a~~Li~~i~newg~savTlHGRSRqQRY--TK~AnWdY 443 (614)
T KOG2333|consen 403 EGHPVAHELIPRIVNEWGASAVTLHGRSRQQRY--TKSANWDY 443 (614)
T ss_pred cCchhHHHHHHHHhhccCcceEEecCchhhhhh--hcccChHH
Confidence 24567777777 7 9999999999999995 79999985
No 12
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.86 E-value=9.2e-23 Score=182.35 Aligned_cols=142 Identities=24% Similarity=0.291 Sum_probs=99.9
Q ss_pred ccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeeccccccc-CCCccccc-----cCch
Q psy7344 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAE-PHCDGIDI-----NIGC 82 (240)
Q Consensus 9 ~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~la-p~~~~~dl-----~~gC 82 (240)
++.+.++|.||||||||+++|+++|+||+||++|+++.++|.+++ ++.+.|+++|.+.... ...+..++ ..|
T Consensus 74 ~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~-~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G- 151 (309)
T PF01207_consen 74 IVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVR-KAVPIPVSVKIRLGWDDSPEETIEFARILEDAG- 151 (309)
T ss_dssp HHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHH-HH-SSEEEEEEESECT--CHHHHHHHHHHHHTT-
T ss_pred hhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhh-cccccceEEecccccccchhHHHHHHHHhhhcc-
Confidence 344568999999999999999999999999999999999999999 5778999998664333 22222222 667
Q ss_pred hhhhhhhcccceee---eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhccc
Q psy7344 83 PQMVAKRGHYGAYL---QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGH 158 (240)
Q Consensus 83 ~~~i~~~g~~ga~l---~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g 158 (240)
...+++|+||.... ..+|+.+++++..+. .|++.+ +|+.+..++.++++. ++|||||++|
T Consensus 152 ~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~---ipvi~N---GdI~s~~d~~~~~~~tg~dgvMigRg---------- 215 (309)
T PF01207_consen 152 VSAITVHGRTRKQRYKGPADWEAIAEIKEALP---IPVIAN---GDIFSPEDAERMLEQTGADGVMIGRG---------- 215 (309)
T ss_dssp --EEEEECS-TTCCCTS---HHHHHHCHHC-T---SEEEEE---SS--SHHHHHHHCCCH-SSEEEESHH----------
T ss_pred cceEEEecCchhhcCCcccchHHHHHHhhccc---ceeEEc---CccCCHHHHHHHHHhcCCcEEEEchh----------
Confidence 57899999988733 678999999887663 677766 999999999999987 9999999988
Q ss_pred ccccccCCHHHHHH
Q psy7344 159 YGAYLQDDWPLLTN 172 (240)
Q Consensus 159 ~G~~l~~~p~~i~~ 172 (240)
++.||+.+.+
T Consensus 216 ----al~nP~lf~~ 225 (309)
T PF01207_consen 216 ----ALGNPWLFRE 225 (309)
T ss_dssp ----HCC-CCHHCH
T ss_pred ----hhhcCHHhhh
Confidence 4678888875
No 13
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.85 E-value=4.9e-21 Score=163.62 Aligned_cols=158 Identities=23% Similarity=0.303 Sum_probs=124.2
Q ss_pred ccccCCCccccccCchhhhhhhhcccceeee--CChhhHHH-----hhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-
Q psy7344 67 FIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ--DDWPLLTE-----LGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP- 138 (240)
Q Consensus 67 ~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~--~d~eli~~-----i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~- 138 (240)
.++|||.+++|++|| .++..+|..-.|.. ....++.. ......+.+.|+++||.+++++++.++++.+.+
T Consensus 2 ~~~aPm~~~~~~~fR--~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~a 79 (231)
T cd02801 2 LILAPMVGVTDLPFR--LLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLAEAAKIVEEL 79 (231)
T ss_pred eEeCCCCCCcCHHHH--HHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhc
Confidence 478999999999998 55555542111210 01122211 111223346899999999999999999999977
Q ss_pred CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh----h-cHHHHHHHHh
Q psy7344 139 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV----A-KRGHYGAYLQ 213 (240)
Q Consensus 139 ~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~----~-~~~~~~~~l~ 213 (240)
|+|+|+||+|||+....+.++|+.++.+|+.+.++++++++. ..+|+++|+|. . ++.++++.++
T Consensus 80 G~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~-----------~~~~v~vk~r~~~~~~~~~~~~~~~l~ 148 (231)
T cd02801 80 GADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA-----------VPIPVTVKIRLGWDDEEETLELAKALE 148 (231)
T ss_pred CCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh-----------cCCCEEEEEeeccCCchHHHHHHHHHH
Confidence 899999999999998888999999999999999999999987 55899999993 2 5788999999
Q ss_pred C-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 214 D-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 214 ~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
+ |+++|++|+|++.|.+ .+.++|+
T Consensus 149 ~~Gvd~i~v~~~~~~~~~--~~~~~~~ 173 (231)
T cd02801 149 DAGASALTVHGRTREQRY--SGPADWD 173 (231)
T ss_pred HhCCCEEEECCCCHHHcC--CCCCCHH
Confidence 9 9999999999998853 5677875
No 14
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.85 E-value=5.7e-21 Score=163.62 Aligned_cols=110 Identities=15% Similarity=-0.041 Sum_probs=97.4
Q ss_pred CCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 113 HMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 113 ~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
+..|+++|+++++++++.++++.+++++|+||||+|||++.+.+.|.|++|+.||+.+.++++++++ .
T Consensus 66 ~~~~vivnv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~------------~ 133 (231)
T TIGR00736 66 SRALVSVNVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE------------L 133 (231)
T ss_pred hcCCEEEEEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc------------C
Confidence 3469999999999999999999999999999999999999999999999999999999999999984 4
Q ss_pred CeeeEEeeeh--h--cHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 193 DINIGCPQMV--A--KRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 193 ~~pvsvK~r~--~--~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
++|||+|+|. . ++.++++++++ |+|+|+||.|+... +.+||+
T Consensus 134 ~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~-----~~a~~~ 180 (231)
T TIGR00736 134 NKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYPGK-----PYADMD 180 (231)
T ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCCCC-----chhhHH
Confidence 7899999993 3 67899999999 99999999655421 237885
No 15
>KOG2335|consensus
Probab=99.83 E-value=6.4e-21 Score=169.46 Aligned_cols=192 Identities=22% Similarity=0.216 Sum_probs=146.7
Q ss_pred CCccccccCC-CCeecccCCCchhhhhc--------cCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCcc
Q psy7344 5 GRDRIETEPH-CDGIDINIGCPQMVAKR--------GHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDG 75 (240)
Q Consensus 5 ~~~~~~~~~~-~d~id~N~gcP~~kv~k--------~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~ 75 (240)
-|||.|++.+ +|+ . ..||.-+.- ...-+....|.|| |+|+. +++...+++++.++.|++|.
T Consensus 32 l~fR~L~R~y~~~l---~-yTpMi~a~~fv~~ek~r~~~~st~~~D~PL----IvQf~--~ndp~~ll~Aa~lv~~y~D~ 101 (358)
T KOG2335|consen 32 LAFRRLVRLYGADL---L-YTPMIHAKTFVHSEKYRDSELSTSPEDRPL----IVQFG--GNDPENLLKAARLVQPYCDG 101 (358)
T ss_pred HHHHHHHHHhCCce---E-echHHHHHHHhcCccchhhhcccCCCCCce----EEEEc--CCCHHHHHHHHHHhhhhcCc
Confidence 4799999988 454 3 889876521 2233666888888 88987 44444457999999999999
Q ss_pred ccccCchhhhhhhhcccceeeeCChhhHHHhhhcccCC-CCceeEEee-cCCHHHHHHHHHHHcc-CCCEEEecCCCchh
Q psy7344 76 IDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSH-MCGHSLMFC-GNDSKNLTEAAKLAEP-HCDGIDINIGCPQM 152 (240)
Q Consensus 76 ~dl~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~-~~pvivqi~-g~d~~~~~~aa~~le~-~~d~Idin~gCP~~ 152 (240)
+|+|||||+.++.+|+||++|+.+|+++.+++.+++.. ..||.++|+ +.|.++..+.++++++ |++.+-+.--
T Consensus 102 idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGR---- 177 (358)
T KOG2335|consen 102 IDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGR---- 177 (358)
T ss_pred ccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecc----
Confidence 99999999999999999999999999999998887653 468999996 5699999999999987 6666666322
Q ss_pred hhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 153 VAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 153 ~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
+...+....-..||+.++.+++.+.+ + ||+++..+....+.-+.++. |+++|.. ||..
T Consensus 178 -tr~~kg~~~~pad~~~i~~v~~~~~~-i-------------pviaNGnI~~~~d~~~~~~~tG~dGVM~-argl 236 (358)
T KOG2335|consen 178 -TREQKGLKTGPADWEAIKAVRENVPD-I-------------PVIANGNILSLEDVERCLKYTGADGVMS-ARGL 236 (358)
T ss_pred -cHHhcCCCCCCcCHHHHHHHHHhCcC-C-------------cEEeeCCcCcHHHHHHHHHHhCCceEEe-cchh
Confidence 11111111236899999999988654 4 55555556677888999999 9999988 7753
No 16
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.81 E-value=1.8e-20 Score=167.93 Aligned_cols=148 Identities=20% Similarity=0.192 Sum_probs=113.0
Q ss_pred ccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCC---ccccc-----cC
Q psy7344 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHC---DGIDI-----NI 80 (240)
Q Consensus 9 ~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~---~~~dl-----~~ 80 (240)
.+.+.++|.||||||||++++.++++|++||++|+++.++|.++. +..+.|+++|.+....+.. +..++ +.
T Consensus 75 ~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~-~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~ 153 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQ-EAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGK 153 (318)
T ss_pred HHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHH-HHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHc
Confidence 345567999999999999999999999999999999999999999 4678999999654222111 11111 56
Q ss_pred chhhhhhhhcccc-e-ee--e-------CChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCC
Q psy7344 81 GCPQMVAKRGHYG-A-YL--Q-------DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGC 149 (240)
Q Consensus 81 gC~~~i~~~g~~g-a-~l--~-------~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gC 149 (240)
| ...+++|||+. . .+ . .+|+.+.+++..+. ..||+.+ +|+.+..++.++++ +||+|||++|
T Consensus 154 G-~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~--~ipVi~N---GdI~s~~da~~~l~-g~dgVMigRg- 225 (318)
T TIGR00742 154 G-CQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFP--HLTIEIN---GGIKNSEQIKQHLS-HVDGVMVGRE- 225 (318)
T ss_pred C-CCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCC--CCcEEEE---CCcCCHHHHHHHHh-CCCEEEECHH-
Confidence 6 57789999985 1 11 1 26888888766542 3677655 89999999988886 8999999998
Q ss_pred chhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 150 PQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 150 P~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
++.||+.+.++.+.+.
T Consensus 226 -------------al~nP~if~~~~~~l~ 241 (318)
T TIGR00742 226 -------------AYENPYLLANVDREIF 241 (318)
T ss_pred -------------HHhCCHHHHHHHHHhc
Confidence 4679999988877654
No 17
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.80 E-value=6.8e-20 Score=164.64 Aligned_cols=151 Identities=19% Similarity=0.201 Sum_probs=117.3
Q ss_pred cccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccC-CCccccc-----cCc
Q psy7344 8 RIETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEP-HCDGIDI-----NIG 81 (240)
Q Consensus 8 ~~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap-~~~~~dl-----~~g 81 (240)
+.+.+.++|.||||||||++|+.++++||+|+++|+++.+++.++. ++.+.|+++|.+.-..+ ..+..++ ..|
T Consensus 84 ~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~-~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G 162 (321)
T PRK10415 84 RINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVV-NAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCG 162 (321)
T ss_pred HHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHH-HhcCCceEEEEEccccCCcchHHHHHHHHHHhC
Confidence 3455678999999999999999999999999999999999999998 46788999885422111 1122222 455
Q ss_pred hhhhhhhhcccceee---eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcc
Q psy7344 82 CPQMVAKRGHYGAYL---QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRG 157 (240)
Q Consensus 82 C~~~i~~~g~~ga~l---~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~ 157 (240)
...+++|+|+.... ..+|+++++++..+ ..|++.+ +|+.+..++.++++. ++|+|++++|
T Consensus 163 -~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~---~iPVI~n---GgI~s~~da~~~l~~~gadgVmiGR~--------- 226 (321)
T PRK10415 163 -IQALTIHGRTRACLFNGEAEYDSIRAVKQKV---SIPVIAN---GDITDPLKARAVLDYTGADALMIGRA--------- 226 (321)
T ss_pred -CCEEEEecCccccccCCCcChHHHHHHHHhc---CCcEEEe---CCCCCHHHHHHHHhccCCCEEEEChH---------
Confidence 46788899886532 46899999987754 3787765 899888999999975 8999999988
Q ss_pred cccccccCCHHHHHHHHHHhhhc
Q psy7344 158 HYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 158 g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
++.||+.+.++.+.+..+
T Consensus 227 -----~l~nP~if~~~~~~~~~~ 244 (321)
T PRK10415 227 -----AQGRPWIFREIQHYLDTG 244 (321)
T ss_pred -----hhcCChHHHHHHHHHhCC
Confidence 568999999988776543
No 18
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.79 E-value=9e-20 Score=163.15 Aligned_cols=144 Identities=17% Similarity=0.150 Sum_probs=111.2
Q ss_pred ccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccC--CCceeecccccccCCCccccc-----cCc
Q psy7344 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK--NGPLFMGPLFIAEPHCDGIDI-----NIG 81 (240)
Q Consensus 9 ~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~--~~p~~vk~~~~lap~~~~~dl-----~~g 81 (240)
.+.+.++|.||||||||+++|.++|+||+||++|+++.+|+.++. +.. +.|+++|.+.-........++ ..|
T Consensus 83 ~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr-~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~G 161 (312)
T PRK10550 83 RAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMR-EAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAG 161 (312)
T ss_pred HHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHH-HhcCCCcceEEEEECCCCCchHHHHHHHHHHhcC
Confidence 445678999999999999999999999999999999999999998 454 479999865321111112222 566
Q ss_pred hhhhhhhhccccee--e-e-CChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhc
Q psy7344 82 CPQMVAKRGHYGAY--L-Q-DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKR 156 (240)
Q Consensus 82 C~~~i~~~g~~ga~--l-~-~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~ 156 (240)
...+++|+|+... . . .+|+.+.+++..+ ..||+.+ +|+.+..++.++++. +||+|||++|
T Consensus 162 -vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~---~iPVi~n---GdI~t~~da~~~l~~~g~DgVmiGRg-------- 226 (312)
T PRK10550 162 -ATELVVHGRTKEDGYRAEHINWQAIGEIRQRL---TIPVIAN---GEIWDWQSAQQCMAITGCDAVMIGRG-------- 226 (312)
T ss_pred -CCEEEECCCCCccCCCCCcccHHHHHHHHhhc---CCcEEEe---CCcCCHHHHHHHHhccCCCEEEEcHH--------
Confidence 5778999988763 2 2 3799999988764 3787665 999999999999965 8999999998
Q ss_pred ccccccccCCHHHHHHHH
Q psy7344 157 GHYGAYLQDDWPLLTNLV 174 (240)
Q Consensus 157 ~g~G~~l~~~p~~i~~iv 174 (240)
++.||+.++++.
T Consensus 227 ------~l~nP~lf~~~~ 238 (312)
T PRK10550 227 ------ALNIPNLSRVVK 238 (312)
T ss_pred ------hHhCcHHHHHhh
Confidence 467888887664
No 19
>KOG2334|consensus
Probab=99.75 E-value=5.1e-18 Score=153.00 Aligned_cols=151 Identities=23% Similarity=0.252 Sum_probs=127.1
Q ss_pred cccccccCCCccccccCchhhhhhhhcccceeeeCChhhHHH-------------------------hhhcccCC-CCce
Q psy7344 64 GPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTE-------------------------LGFKTRSH-MCGH 117 (240)
Q Consensus 64 k~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~-------------------------i~~~~~~~-~~pv 117 (240)
..+.+++||+..-+++++ +++. .||+.+...||++.. +++.+.+. ..-+
T Consensus 10 ~nk~iLApMvr~G~lpmr---LLal--~~Gadlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e~~rl 84 (477)
T KOG2334|consen 10 RNKLILAPMVRAGELPMR---LLAL--QYGADLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAENSRL 84 (477)
T ss_pred cCcEeeehHHHhccchHH---HHHH--HhccceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhhcCeE
Confidence 446789999998888886 6665 488977666776652 11222222 1247
Q ss_pred eEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeE
Q psy7344 118 SLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIG 197 (240)
Q Consensus 118 ivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvs 197 (240)
+.|++.++++-..++|+.+.+-+.|||+|+|||-....|+|+|++|+.+|+.+..|+..+.++ .++|++
T Consensus 85 ilQ~gT~sa~lA~e~A~lv~nDvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~-----------~~vpvt 153 (477)
T KOG2334|consen 85 ILQIGTASAELALEAAKLVDNDVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKG-----------NKVPVT 153 (477)
T ss_pred EEEecCCcHHHHHHHHHHhhcccccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhc-----------Ccccce
Confidence 889999999999999999998899999999999999999999999999999999999999888 789999
Q ss_pred Eeee----hhcHHHHHHHHhC-CCCeEEEecccccccC
Q psy7344 198 CPQM----VAKRGHYGAYLQD-DWPLLTELGKMAMLVG 230 (240)
Q Consensus 198 vK~r----~~~~~~~~~~l~~-G~~~itih~R~~~~~~ 230 (240)
+|+| .++|+++.+.++. |+.+|++|+||+..+-
T Consensus 154 ckIR~L~s~edtL~lv~ri~~tgi~ai~vh~rt~d~r~ 191 (477)
T KOG2334|consen 154 CKIRLLDSKEDTLKLVKRICATGIAAITVHCRTRDERN 191 (477)
T ss_pred eEEEecCCcccHHHHHHHHHhcCCceEEEEeeccccCC
Confidence 9999 3679999999999 9999999999999873
No 20
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.75 E-value=8.3e-18 Score=149.77 Aligned_cols=111 Identities=15% Similarity=0.107 Sum_probs=97.9
Q ss_pred CCceeEEeecC-CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGN-DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~-d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
+.|+++|+.|+ +++++.++++.+++ ++|+||||+|||+.. .+.+.|++++.||+.+.++++++++.
T Consensus 99 ~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~-~~~~~G~~l~~~~~~~~~iv~~v~~~----------- 166 (299)
T cd02940 99 DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGM-PERGMGAAVGQDPELVEEICRWVREA----------- 166 (299)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC-CCCCCchhhccCHHHHHHHHHHHHHh-----------
Confidence 47999999998 99999999999986 799999999999984 45568999999999999999999988
Q ss_pred CCeeeEEeee--hhcHHHHHHHHhC-CCCeEE---------------------EecccccccCCCCCCCCC
Q psy7344 192 NDINIGCPQM--VAKRGHYGAYLQD-DWPLLT---------------------ELGKMAMLVGILDNTGSW 238 (240)
Q Consensus 192 ~~~pvsvK~r--~~~~~~~~~~l~~-G~~~it---------------------ih~R~~~~~~~~~~~adw 238 (240)
+++||++|++ ++++.++++.+++ |+|+|+ +|+||+.+. |+|+++|
T Consensus 167 ~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg--~sG~a~~ 235 (299)
T cd02940 167 VKIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGG--YSGPAVK 235 (299)
T ss_pred cCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCc--ccCCCcc
Confidence 6889999999 4578899999999 999998 567777776 5799884
No 21
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.70 E-value=1.5e-17 Score=142.56 Aligned_cols=129 Identities=19% Similarity=0.120 Sum_probs=97.4
Q ss_pred cCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCccccc-----cCchhhhh
Q psy7344 12 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDI-----NIGCPQMV 86 (240)
Q Consensus 12 ~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~dl-----~~gC~~~i 86 (240)
+.++|.||||||||++++.++++|++||+||+++.+++.++. ..+.|+++|.+... +..+..++ ..| ...+
T Consensus 90 ~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~--~~~~PVsvKiR~~~-~~~~~~~~a~~l~~aG-ad~i 165 (231)
T TIGR00736 90 AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMK--ELNKPIFVKIRGNC-IPLDELIDALNLVDDG-FDGI 165 (231)
T ss_pred hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHH--cCCCcEEEEeCCCC-CcchHHHHHHHHHHcC-CCEE
Confidence 457999999999999999999999999999999999999998 45799999854211 11122222 445 3456
Q ss_pred hhhcccceeeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCC
Q psy7344 87 AKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGC 149 (240)
Q Consensus 87 ~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gC 149 (240)
++|.+|...-..+|+.|+++...++ ..|+|.+ +|+.+..++.++++.|||+|++++|.
T Consensus 166 ~Vd~~~~g~~~a~~~~I~~i~~~~~--~ipIIgN---GgI~s~eda~e~l~~GAd~VmvgR~~ 223 (231)
T TIGR00736 166 HVDAMYPGKPYADMDLLKILSEEFN--DKIIIGN---NSIDDIESAKEMLKAGADFVSVARAI 223 (231)
T ss_pred EEeeCCCCCchhhHHHHHHHHHhcC--CCcEEEE---CCcCCHHHHHHHHHhCCCeEEEcHhh
Confidence 6665443211147999999877652 2676655 99999999999999899999999874
No 22
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.67 E-value=5.6e-16 Score=137.87 Aligned_cols=98 Identities=16% Similarity=0.173 Sum_probs=88.2
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc---CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP---HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~---~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
..|+++||+|++++++.++++.+++ ++|+||||+|||+.. ++|++++.+|+.+.++++++++.
T Consensus 90 ~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~----~~g~~l~~~~~~~~eiv~~vr~~---------- 155 (300)
T TIGR01037 90 PTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK----GGGIAIGQDPELSADVVKAVKDK---------- 155 (300)
T ss_pred CCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCC----CCccccccCHHHHHHHHHHHHHh----------
Confidence 4699999999999999999999975 389999999999962 57888999999999999999998
Q ss_pred CCCeeeEEeee--hhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 191 GNDINIGCPQM--VAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 191 ~~~~pvsvK~r--~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
+++||++|++ +++..++++.+++ |+|+|++|+++.
T Consensus 156 -~~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~ 193 (300)
T TIGR01037 156 -TDVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLR 193 (300)
T ss_pred -cCCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCC
Confidence 6889999999 5678899999999 999999997653
No 23
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.66 E-value=9.7e-17 Score=144.92 Aligned_cols=147 Identities=18% Similarity=0.166 Sum_probs=108.7
Q ss_pred cccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCC---Cccccc-----cCc
Q psy7344 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPH---CDGIDI-----NIG 81 (240)
Q Consensus 10 ~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~---~~~~dl-----~~g 81 (240)
+.+.++|.||||||||++++.++++|++|+++|+++.+++.++. +..+.|+++|.+...... .+..++ +.|
T Consensus 86 ~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr-~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG 164 (333)
T PRK11815 86 AEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMK-DAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAG 164 (333)
T ss_pred HHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHH-HHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhC
Confidence 44567999999999999999999999999999999999999999 466889999864322211 111122 456
Q ss_pred hhhhhhhhcccce---ee--------eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCc
Q psy7344 82 CPQMVAKRGHYGA---YL--------QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCP 150 (240)
Q Consensus 82 C~~~i~~~g~~ga---~l--------~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP 150 (240)
...+++|+|++. +. ..+|+.+.++...+. +.||+.+ +++.+..++.++++ ++|+|++++|
T Consensus 165 -~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~--~iPVI~n---GgI~s~eda~~~l~-~aDgVmIGRa-- 235 (333)
T PRK11815 165 -CDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFP--HLTIEIN---GGIKTLEEAKEHLQ-HVDGVMIGRA-- 235 (333)
T ss_pred -CCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCC--CCeEEEE---CCcCCHHHHHHHHh-cCCEEEEcHH--
Confidence 466788888752 11 145888887764421 3677655 88888888888876 4999999888
Q ss_pred hhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 151 QMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 151 ~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
++.||+.+.++.+.+.
T Consensus 236 ------------~l~nP~~~~~~~~~~~ 251 (333)
T PRK11815 236 ------------AYHNPYLLAEVDRELF 251 (333)
T ss_pred ------------HHhCCHHHHHHHHHhc
Confidence 5789999988876654
No 24
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.65 E-value=4.8e-16 Score=144.47 Aligned_cols=110 Identities=14% Similarity=0.080 Sum_probs=96.1
Q ss_pred CCceeEEeecC-CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGN-DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~-d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
+.|+++||.|+ +++++.++++.+++ ++|+||||+|||+.. ...+.|++++.+|+.+.+|++++++.
T Consensus 99 ~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~-~~~~~g~~~~~~~~~~~~i~~~v~~~----------- 166 (420)
T PRK08318 99 DRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGM-SERGMGSAVGQVPELVEMYTRWVKRG----------- 166 (420)
T ss_pred CceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCc-cccCCcccccCCHHHHHHHHHHHHhc-----------
Confidence 47899999998 89999999999977 799999999999943 44568899999999999999999998
Q ss_pred CCeeeEEeee--hhcHHHHHHHHhC-CCCeEE---------------------EecccccccCCCCCCCC
Q psy7344 192 NDINIGCPQM--VAKRGHYGAYLQD-DWPLLT---------------------ELGKMAMLVGILDNTGS 237 (240)
Q Consensus 192 ~~~pvsvK~r--~~~~~~~~~~l~~-G~~~it---------------------ih~R~~~~~~~~~~~ad 237 (240)
+++||++|++ +.+..++++.+++ |+|+|+ +|+|++.+. |+|++.
T Consensus 167 ~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg--~SG~a~ 234 (420)
T PRK08318 167 SRLPVIVKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGG--YCGPAV 234 (420)
T ss_pred cCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCccc--ccchhh
Confidence 6899999999 4577899999999 999999 577877776 478884
No 25
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=99.63 E-value=4.3e-16 Score=134.12 Aligned_cols=120 Identities=13% Similarity=0.102 Sum_probs=89.2
Q ss_pred CCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCccccc-----cCchhhhhhh
Q psy7344 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDI-----NIGCPQMVAK 88 (240)
Q Consensus 14 ~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~dl-----~~gC~~~i~~ 88 (240)
+.|.||||||||+++++++++|++||+||+++.+++.++. ..+.|+++|...... .+..++ ..| ...+
T Consensus 97 ~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr--~~~~pVsvKir~g~~--~~~~~la~~l~~aG-~d~i-- 169 (233)
T cd02911 97 NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALK--ETGVPVSVKIRAGVD--VDDEELARLIEKAG-ADII-- 169 (233)
T ss_pred cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHH--hcCCCEEEEEcCCcC--cCHHHHHHHHHHhC-CCEE--
Confidence 5799999999999999999999999999999999999999 358999998542211 222222 334 2222
Q ss_pred hccccee-eeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCC
Q psy7344 89 RGHYGAY-LQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIG 148 (240)
Q Consensus 89 ~g~~ga~-l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~g 148 (240)
|.+.+.. ...+|+.|+++. ...|++.+ +++.+..++.++++.|+|+|+++++
T Consensus 170 hv~~~~~g~~ad~~~I~~i~-----~~ipVIgn---GgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 170 HVDAMDPGNHADLKKIRDIS-----TELFIIGN---NSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred EECcCCCCCCCcHHHHHHhc-----CCCEEEEE---CCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 3322211 245788888874 13676654 8999999999999889999999888
No 26
>KOG2333|consensus
Probab=99.61 E-value=1.7e-15 Score=138.65 Aligned_cols=142 Identities=20% Similarity=0.171 Sum_probs=108.4
Q ss_pred CCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeeccccc-ccC------CCccccccCchhhhhh
Q psy7344 15 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFI-AEP------HCDGIDINIGCPQMVA 87 (240)
Q Consensus 15 ~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~-lap------~~~~~dl~~gC~~~i~ 87 (240)
+|+||||||||..-|.++|+||+||+.|..+.++|..+.+.....|+|||.+.- -++ ++.-+.-+-| +.+++
T Consensus 347 VDFIDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg-~savT 425 (614)
T KOG2333|consen 347 VDFIDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWG-ASAVT 425 (614)
T ss_pred eeeeeccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccCchhHHHHHHHHhhccC-cceEE
Confidence 799999999999999999999999999999999999888422346999985421 111 1111111556 67899
Q ss_pred hhcccce--ee-eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccC--CCEEEecCCCchhhhhccccccc
Q psy7344 88 KRGHYGA--YL-QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH--CDGIDINIGCPQMVAKRGHYGAY 162 (240)
Q Consensus 88 ~~g~~ga--~l-~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~--~d~Idin~gCP~~~~~~~g~G~~ 162 (240)
.|||.+. |. .+||++|.+...++++. .|+|. ++|+-++++..+.+... +++|||.+|
T Consensus 426 lHGRSRqQRYTK~AnWdYi~e~a~~ak~~-l~liG---NGDi~S~eDw~~~~~~~p~v~svMIaRG-------------- 487 (614)
T KOG2333|consen 426 LHGRSRQQRYTKSANWDYIEECADKAKSA-LPLIG---NGDILSWEDWYERLNQNPNVDSVMIARG-------------- 487 (614)
T ss_pred ecCchhhhhhhcccChHHHHHHHHhcccC-ceeEe---cCccccHHHHHHHhhcCCCcceEEeecc--------------
Confidence 9998776 55 68999999988776543 34443 48999999999998763 899999999
Q ss_pred ccCCHHHHHHHHH
Q psy7344 163 LQDDWPLLTNLVY 175 (240)
Q Consensus 163 l~~~p~~i~~iv~ 175 (240)
.+-.|+.+.+|.+
T Consensus 488 ALIKPWIFtEIke 500 (614)
T KOG2333|consen 488 ALIKPWIFTEIKE 500 (614)
T ss_pred ccccchHhhhhhh
Confidence 2467888877765
No 27
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.58 E-value=2.5e-15 Score=134.95 Aligned_cols=149 Identities=21% Similarity=0.252 Sum_probs=110.4
Q ss_pred ccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccC-CCccccc-----cCch
Q psy7344 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEP-HCDGIDI-----NIGC 82 (240)
Q Consensus 9 ~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap-~~~~~dl-----~~gC 82 (240)
...+.++|.||||+|||+++++++++|++|+++|+++.+++.++. +..+.|+++|...-..+ ..+..++ ..|
T Consensus 83 ~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr-~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G- 160 (319)
T TIGR00737 83 INEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVV-DAVDIPVTVKIRIGWDDAHINAVEAARIAEDAG- 160 (319)
T ss_pred HHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHH-hhcCCCEEEEEEcccCCCcchHHHHHHHHHHhC-
Confidence 345568999999999999999999999999999999999999998 46678998885421111 1111222 345
Q ss_pred hhhhhhhcccceee---eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhccc
Q psy7344 83 PQMVAKRGHYGAYL---QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGH 158 (240)
Q Consensus 83 ~~~i~~~g~~ga~l---~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g 158 (240)
...+++|+++.... ..+|+.+++++..+ ..|++.+ +++.+..++.++++. ++|+|+++++
T Consensus 161 ~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~---~ipvi~n---GgI~~~~da~~~l~~~gad~VmigR~---------- 224 (319)
T TIGR00737 161 AQAVTLHGRTRAQGYSGEANWDIIARVKQAV---RIPVIGN---GDIFSPEDAKAMLETTGCDGVMIGRG---------- 224 (319)
T ss_pred CCEEEEEcccccccCCCchhHHHHHHHHHcC---CCcEEEe---CCCCCHHHHHHHHHhhCCCEEEEChh----------
Confidence 35677787765422 34688888877654 3677665 888888888888854 7999999877
Q ss_pred ccccccCCHHHHHHHHHHhhh
Q psy7344 159 YGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 159 ~G~~l~~~p~~i~~iv~~~~~ 179 (240)
++.||+.+.++.+.+..
T Consensus 225 ----~l~~P~l~~~~~~~~~~ 241 (319)
T TIGR00737 225 ----ALGNPWLFRQIEQYLTT 241 (319)
T ss_pred ----hhhCChHHHHHHHHHhC
Confidence 56899988888776554
No 28
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.56 E-value=2.7e-14 Score=127.23 Aligned_cols=98 Identities=16% Similarity=0.161 Sum_probs=87.2
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-C-CCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-H-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~-~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
+.|+++||.|++++++.++++.+++ | +|+||||++||+.. +| |..+..+++.+.++++++++.
T Consensus 91 ~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~---~g-g~~~~~~~~~~~eiv~~vr~~----------- 155 (301)
T PRK07259 91 DTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVK---HG-GMAFGTDPELAYEVVKAVKEV----------- 155 (301)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCC---CC-ccccccCHHHHHHHHHHHHHh-----------
Confidence 5899999999999999999999977 6 99999999999952 22 677889999999999999998
Q ss_pred CCeeeEEeee--hhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 192 NDINIGCPQM--VAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 192 ~~~pvsvK~r--~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
+++||++|++ ++++.++++.+++ |+|+|++++++.
T Consensus 156 ~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~ 193 (301)
T PRK07259 156 VKVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLK 193 (301)
T ss_pred cCCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEcccc
Confidence 6889999999 5678899999999 999999977654
No 29
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.56 E-value=3.8e-14 Score=125.89 Aligned_cols=98 Identities=16% Similarity=0.180 Sum_probs=86.5
Q ss_pred CCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 113 HMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 113 ~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
.+.|+++||.+++++++.++++.+++ |+|+||||++||+.. +.|++++.+|+.+.++++++++.
T Consensus 88 ~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~----~~g~~~~~~~~~~~eiv~~vr~~----------- 152 (296)
T cd04740 88 FGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVK----GGGMAFGTDPEAVAEIVKAVKKA----------- 152 (296)
T ss_pred CCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCC----CCcccccCCHHHHHHHHHHHHhc-----------
Confidence 35799999999999999999999977 699999999999852 33778899999999999999998
Q ss_pred CCeeeEEeee--hhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 192 NDINIGCPQM--VAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 192 ~~~pvsvK~r--~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+++||++|++ .+++.++++.+++ |+|+|++++++
T Consensus 153 ~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~ 189 (296)
T cd04740 153 TDVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTL 189 (296)
T ss_pred cCCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCC
Confidence 6899999999 4568899999999 99999997654
No 30
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.49 E-value=1.8e-13 Score=121.00 Aligned_cols=98 Identities=16% Similarity=0.164 Sum_probs=86.1
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
+.|+++||++++++++.++++.+++ ++|+|+||++||+... +..++.+|+.+.++++++++. +
T Consensus 98 ~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~-----~~~~~~~~~~~~eiv~~vr~~-----------~ 161 (289)
T cd02810 98 GQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGG-----GRQLGQDPEAVANLLKAVKAA-----------V 161 (289)
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccCHHHHHHHHHHHHHc-----------c
Confidence 5899999999999999999999977 6999999999998532 334788999999999999998 6
Q ss_pred CeeeEEeee--hh--cHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 193 DINIGCPQM--VA--KRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 193 ~~pvsvK~r--~~--~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
++||++|++ ++ ++.++++.+++ |+|+|++|+|+..
T Consensus 162 ~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~ 201 (289)
T cd02810 162 DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISG 201 (289)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCc
Confidence 889999999 22 67899999999 9999999999753
No 31
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.45 E-value=5.2e-13 Score=120.45 Aligned_cols=104 Identities=8% Similarity=-0.002 Sum_probs=82.9
Q ss_pred CCCceeEEeecCC-------HHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhcccccc
Q psy7344 113 HMCGHSLMFCGND-------SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIA 185 (240)
Q Consensus 113 ~~~pvivqi~g~d-------~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~ 185 (240)
.+.|+++||.+++ .+++.+.++.+...+|+||+|++||+.. + ...+.+|+.+.++++++++.+...
T Consensus 127 ~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~----g--~~~~~~~~~~~~iv~av~~~~~~~- 199 (327)
T cd04738 127 RGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTP----G--LRDLQGKEALRELLTAVKEERNKL- 199 (327)
T ss_pred CCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCC----c--cccccCHHHHHHHHHHHHHHHhhc-
Confidence 3579999998876 5777777787777799999999999852 2 224789999999999999972000
Q ss_pred CCCCCCCCeeeEEeee--hh--cHHHHHHHHhC-CCCeEEEecccccc
Q psy7344 186 EPHCDGNDINIGCPQM--VA--KRGHYGAYLQD-DWPLLTELGKMAML 228 (240)
Q Consensus 186 ~~~~~~~~~pvsvK~r--~~--~~~~~~~~l~~-G~~~itih~R~~~~ 228 (240)
+.++||++|++ ++ ++.++++.+++ |+|+|++|+|+..+
T Consensus 200 -----~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~ 242 (327)
T cd04738 200 -----GKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISR 242 (327)
T ss_pred -----ccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccc
Confidence 01389999999 32 67889999999 99999999998754
No 32
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.41 E-value=1.3e-12 Score=119.67 Aligned_cols=102 Identities=14% Similarity=0.127 Sum_probs=90.6
Q ss_pred CCceeEEeec-CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCG-NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g-~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
++|+|++|++ .+++++.+.++.+++ ++|+|+||++||+....++ .|.++..+|+.++++++++++.
T Consensus 113 ~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~-~g~~~gq~~e~~~~i~~~Vk~~----------- 180 (385)
T PLN02495 113 DRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERK-MGAAVGQDCDLLEEVCGWINAK----------- 180 (385)
T ss_pred CCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCc-cchhhccCHHHHHHHHHHHHHh-----------
Confidence 4799999977 799999999999987 6999999999999654443 6888899999999999999988
Q ss_pred CCeeeEEeee--hhcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 192 NDINIGCPQM--VAKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 192 ~~~pvsvK~r--~~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
+++||.+|+. +++..++++++++ |+|+|++..++..
T Consensus 181 ~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~ 219 (385)
T PLN02495 181 ATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIMS 219 (385)
T ss_pred hcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCc
Confidence 7899999999 6678899999999 9999999998863
No 33
>KOG2334|consensus
Probab=99.39 E-value=3.1e-13 Score=122.34 Aligned_cols=209 Identities=17% Similarity=0.195 Sum_probs=140.2
Q ss_pred cccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCccccc-----cCchhh
Q psy7344 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDI-----NIGCPQ 84 (240)
Q Consensus 10 ~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~dl-----~~gC~~ 84 (240)
++...+..||+|||||=.-.+++|-|++|+.+|+.+..|+..|+ ++++.|++.|.+ +|..-.|-+++ ..| +.
T Consensus 102 lv~nDvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLv-k~~~vpvtckIR-~L~s~edtL~lv~ri~~tg-i~ 178 (477)
T KOG2334|consen 102 LVDNDVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLV-KGNKVPVTCKIR-LLDSKEDTLKLVKRICATG-IA 178 (477)
T ss_pred HhhcccccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHH-hcCcccceeEEE-ecCCcccHHHHHHHHHhcC-Cc
Confidence 34556789999999999999999999999999999999999999 688999998866 33323333333 555 66
Q ss_pred hhhhhcccceee---eCChhhHHHhhhcccCCCCceeEE--------------------------------------eec
Q psy7344 85 MVAKRGHYGAYL---QDDWPLLTELGFKTRSHMCGHSLM--------------------------------------FCG 123 (240)
Q Consensus 85 ~i~~~g~~ga~l---~~d~eli~~i~~~~~~~~~pvivq--------------------------------------i~g 123 (240)
.+++|+|+.-.- ....+.++++..... ..|++++ .-|
T Consensus 179 ai~vh~rt~d~r~~~~~~~~~i~~i~~~~~--~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n~SiF~~eG 256 (477)
T KOG2334|consen 179 AITVHCRTRDERNQEPATKDYIREIAQACQ--MVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESNPSIFREEG 256 (477)
T ss_pred eEEEEeeccccCCCCCCCHHHHHHHHHHhc--cceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcCCceeeecC
Confidence 777887765433 222344444322111 0222222 111
Q ss_pred CCHH--HHHHHHHH---Hcc--C----C---CEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCC
Q psy7344 124 NDSK--NLTEAAKL---AEP--H----C---DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHC 189 (240)
Q Consensus 124 ~d~~--~~~~aa~~---le~--~----~---d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~ 189 (240)
.+++ ...+..++ ..+ + | --.+++.+||......++.+.+.+..++.+..+.+..+..
T Consensus 257 ~~~~~~~~~~fl~~a~~~dn~~~ntkycl~~il~~~~~~~p~~~~~~~~~~~~~i~k~~~i~d~~~~~~~e--------- 327 (477)
T KOG2334|consen 257 CLSEKEVIREFLRLAVQYDNHYGNTKYCLQRILRGIQEGCPRGKRIQAAQTVAQICKAFEIEDIYATLKRE--------- 327 (477)
T ss_pred CchHHHHHHHHHHHHHHHhhcccchhHHHHHHhhhhhccCchhhHhhcchhHHHHHHHhcchhHHHhhHHh---------
Confidence 1111 11112221 111 1 1 2356889999988888888888889999999998887776
Q ss_pred CCCCeeeEEeee----hhcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 190 DGNDINIGCPQM----VAKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 190 ~~~~~pvsvK~r----~~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
.+.|+ .|.| ..++..+++.+++ + .+.+|+|....+. +-+++|+
T Consensus 328 --l~~~~-~k~Rl~~~~~d~~~~~~~le~~~--~l~i~~r~~f~r~--~~pa~~~ 375 (477)
T KOG2334|consen 328 --LDTPV-CKKRLLVSPADTVNLAERLEDLS--ALAIHGRKIFDRP--TDPAKWD 375 (477)
T ss_pred --hcccc-ccceeeeCcchhhhHhhhHHhcc--chhhhhccccccc--CCCcCCC
Confidence 67777 7888 2467888899999 8 7789999966663 4578886
No 34
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.38 E-value=2.7e-12 Score=115.72 Aligned_cols=97 Identities=12% Similarity=0.043 Sum_probs=82.1
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
+.|+++||.+++++++.++++.+++ ++|+|+||++||... .+.+|.+ .++.+.++++++++. +
T Consensus 99 ~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~--~~~~g~~---~~~~~~eiv~~v~~~-----------~ 162 (325)
T cd04739 99 SIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTD--PDISGAE---VEQRYLDILRAVKSA-----------V 162 (325)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC--CCcccch---HHHHHHHHHHHHHhc-----------c
Confidence 5799999999999999999999977 799999999996532 1334443 357888999999988 6
Q ss_pred CeeeEEeee--hhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 193 DINIGCPQM--VAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 193 ~~pvsvK~r--~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
++||++|++ +++..++++.+++ |+|+|++|+|+.
T Consensus 163 ~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~~ 199 (325)
T cd04739 163 TIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRFY 199 (325)
T ss_pred CCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCcC
Confidence 899999999 4678899999999 999999999974
No 35
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.35 E-value=6.1e-12 Score=111.92 Aligned_cols=94 Identities=12% Similarity=0.153 Sum_probs=76.1
Q ss_pred CCCceeEEeecCCHHHHHHHHHHHcc----CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCC
Q psy7344 113 HMCGHSLMFCGNDSKNLTEAAKLAEP----HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPH 188 (240)
Q Consensus 113 ~~~pvivqi~g~d~~~~~~aa~~le~----~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~ 188 (240)
.+.|+++||.++ ++++.++++.+++ ++|+||||+|||+.. +. ..+..||+.+.++++++++.
T Consensus 90 ~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~----~~-~~~~~~~~~~~~i~~~v~~~-------- 155 (294)
T cd04741 90 SAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVP----GK-PPPAYDFDATLEYLTAVKAA-------- 155 (294)
T ss_pred cCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCC----Cc-ccccCCHHHHHHHHHHHHHh--------
Confidence 357999999998 9999999888865 589999999999952 22 24678999999999999998
Q ss_pred CCCCCeeeEEeee--h--hcHHHHHHHHhC---CCCeEEEec
Q psy7344 189 CDGNDINIGCPQM--V--AKRGHYGAYLQD---DWPLLTELG 223 (240)
Q Consensus 189 ~~~~~~pvsvK~r--~--~~~~~~~~~l~~---G~~~itih~ 223 (240)
+++||++|++ + .++.++++.+.+ |+|+|+++.
T Consensus 156 ---~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~N 194 (294)
T cd04741 156 ---YSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATN 194 (294)
T ss_pred ---cCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEc
Confidence 7899999999 2 245667777755 689999543
No 36
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.34 E-value=4.7e-12 Score=114.98 Aligned_cols=103 Identities=8% Similarity=-0.056 Sum_probs=82.1
Q ss_pred CCCceeEEeecC-------CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhcccccc
Q psy7344 113 HMCGHSLMFCGN-------DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIA 185 (240)
Q Consensus 113 ~~~pvivqi~g~-------d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~ 185 (240)
.+.|++++|.++ ..+++.+.++.+++++|+|++|++||+.. + .....+++.+.++++++++.+...
T Consensus 136 ~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~----g--~~~~~~~~~~~eiv~aVr~~~~~~- 208 (344)
T PRK05286 136 RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTP----G--LRDLQYGEALDELLAALKEAQAEL- 208 (344)
T ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCC----C--cccccCHHHHHHHHHHHHHHHhcc-
Confidence 357999999875 56788888888877899999999999863 2 223789999999999999982000
Q ss_pred CCCCCCCCeeeEEeeeh----hcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 186 EPHCDGNDINIGCPQMV----AKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 186 ~~~~~~~~~pvsvK~r~----~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
. .++||++|++. ++..++++.+++ |+|+|++|+|+..
T Consensus 209 -~----~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~ 250 (344)
T PRK05286 209 -H----GYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLS 250 (344)
T ss_pred -c----cCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccc
Confidence 0 02899999993 257899999999 9999999999853
No 37
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=99.31 E-value=2e-12 Score=110.35 Aligned_cols=144 Identities=23% Similarity=0.304 Sum_probs=102.9
Q ss_pred cccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCccccc-----cCchhh
Q psy7344 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDI-----NIGCPQ 84 (240)
Q Consensus 10 ~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~dl-----~~gC~~ 84 (240)
+.+.|+|.|+||+|||+.++.+.++|+.++++++++.+++.++. +....|+++|......+..+..++ ..| ..
T Consensus 76 ~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~-~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~G-vd 153 (231)
T cd02801 76 VEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVR-EAVPIPVTVKIRLGWDDEEETLELAKALEDAG-AS 153 (231)
T ss_pred HHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHH-HhcCCCEEEEEeeccCCchHHHHHHHHHHHhC-CC
Confidence 34458999999999999999999999999999999999999998 355578888743211110011111 334 24
Q ss_pred hhhhhcccce--ee-eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhccccc
Q psy7344 85 MVAKRGHYGA--YL-QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYG 160 (240)
Q Consensus 85 ~i~~~g~~ga--~l-~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G 160 (240)
.+++|+++.. +. ..+++.++.+.... ..|+++. ++..+..++.++++. ++|+|+++++
T Consensus 154 ~i~v~~~~~~~~~~~~~~~~~~~~i~~~~---~ipvi~~---Ggi~~~~d~~~~l~~~gad~V~igr~------------ 215 (231)
T cd02801 154 ALTVHGRTREQRYSGPADWDYIAEIKEAV---SIPVIAN---GDIFSLEDALRCLEQTGVDGVMIGRG------------ 215 (231)
T ss_pred EEEECCCCHHHcCCCCCCHHHHHHHHhCC---CCeEEEe---CCCCCHHHHHHHHHhcCCCEEEEcHH------------
Confidence 5666766543 22 34677777765432 3676655 777788888888887 7999999887
Q ss_pred ccccCCHHHHHHHHH
Q psy7344 161 AYLQDDWPLLTNLVY 175 (240)
Q Consensus 161 ~~l~~~p~~i~~iv~ 175 (240)
++.||+.+.++.+
T Consensus 216 --~l~~P~~~~~~~~ 228 (231)
T cd02801 216 --ALGNPWLFREIKE 228 (231)
T ss_pred --hHhCCHHHHhhhh
Confidence 6789999888765
No 38
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.29 E-value=1.7e-11 Score=110.85 Aligned_cols=98 Identities=11% Similarity=0.053 Sum_probs=81.4
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
+.|+++||++.+++++.++++.+++ ++|+|+||++||.... ...|. ..++.+.++++++++. +
T Consensus 101 ~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~--~~~g~---~~~~~~~eil~~v~~~-----------~ 164 (334)
T PRK07565 101 DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDP--DISGA---EVEQRYLDILRAVKSA-----------V 164 (334)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC--CCccc---cHHHHHHHHHHHHHhc-----------c
Confidence 4799999999999999999999976 7999999999977532 22232 2456678899999887 7
Q ss_pred CeeeEEeee--hhcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 193 DINIGCPQM--VAKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 193 ~~pvsvK~r--~~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
++||++|++ +++..++++.+++ |+|+|++|+|+..
T Consensus 165 ~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~ 202 (334)
T PRK07565 165 SIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRFYQ 202 (334)
T ss_pred CCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCcCC
Confidence 899999999 4567899999999 9999999999743
No 39
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.28 E-value=3.5e-12 Score=113.66 Aligned_cols=148 Identities=14% Similarity=0.198 Sum_probs=97.6
Q ss_pred ccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccc-----------cCCCccc-
Q psy7344 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIA-----------EPHCDGI- 76 (240)
Q Consensus 9 ~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~l-----------ap~~~~~- 76 (240)
.+.+.++|.||||++||.. +.++++|+.|+++|+++.+++.++. +..+.|+++|..... ..-++++
T Consensus 121 ~~~~~gad~ielN~sCP~~-~~~~~~G~~l~~~~~~~~~iv~~v~-~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~ 198 (299)
T cd02940 121 LVEEAGADALELNFSCPHG-MPERGMGAAVGQDPELVEEICRWVR-EAVKIPVIAKLTPNITDIREIARAAKEGGADGVS 198 (299)
T ss_pred HHHhcCCCEEEEECCCCCC-CCCCCCchhhccCHHHHHHHHHHHH-HhcCCCeEEECCCCchhHHHHHHHHHHcCCCEEE
Confidence 4455579999999999998 4556799999999999999999998 466899999843110 0011111
Q ss_pred -----------cccCchhhhhhhhcccce--ee-eCC----hhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc
Q psy7344 77 -----------DINIGCPQMVAKRGHYGA--YL-QDD----WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP 138 (240)
Q Consensus 77 -----------dl~~gC~~~i~~~g~~ga--~l-~~d----~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~ 138 (240)
|+.-+ +.....|++++. +. ... |+.+.++...+. .+.|++.. +++.+..++.+++..
T Consensus 199 ~~Nt~~~~~~id~~~~-~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~-~~ipIig~---GGI~~~~da~~~l~a 273 (299)
T cd02940 199 AINTVNSLMGVDLDGT-PPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPE-PGLPISGI---GGIESWEDAAEFLLL 273 (299)
T ss_pred EecccccccccccccC-CccccccCCCCcCcccCCCcchHHHHHHHHHHHhcC-CCCcEEEE---CCCCCHHHHHHHHHc
Confidence 11111 000113444333 22 222 667777765542 13566654 899999999999999
Q ss_pred CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHH
Q psy7344 139 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176 (240)
Q Consensus 139 ~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~ 176 (240)
|+|+|++..+. +...|+.+.+|++.
T Consensus 274 GA~~V~i~ta~-------------~~~g~~~~~~i~~~ 298 (299)
T cd02940 274 GASVVQVCTAV-------------MNQGFTIVDDMCTG 298 (299)
T ss_pred CCChheEceee-------------cccCCcHHHHHhhh
Confidence 99999997772 33477788887754
No 40
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.20 E-value=2.2e-11 Score=113.26 Aligned_cols=134 Identities=15% Similarity=0.180 Sum_probs=88.0
Q ss_pred ccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccc-----------cCCCccc-
Q psy7344 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIA-----------EPHCDGI- 76 (240)
Q Consensus 9 ~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~l-----------ap~~~~~- 76 (240)
.+.+.++|.||||++||. ++.+++.|+.|+++|+++.+|+.++. +..+.|++||..-.. ...++.+
T Consensus 121 ~~~~~g~d~ielN~scP~-~~~~~~~g~~~~~~~~~~~~i~~~v~-~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~ 198 (420)
T PRK08318 121 LVEETGADGIELNFGCPH-GMSERGMGSAVGQVPELVEMYTRWVK-RGSRLPVIVKLTPNITDIREPARAAKRGGADAVS 198 (420)
T ss_pred HHHhcCCCEEEEeCCCCC-CccccCCcccccCCHHHHHHHHHHHH-hccCCcEEEEcCCCcccHHHHHHHHHHCCCCEEE
Confidence 345567999999999999 67667899999999999999999998 466899999842110 0111111
Q ss_pred -----------cccCchhhhhhhhcccce--ee-eC----ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc
Q psy7344 77 -----------DINIGCPQMVAKRGHYGA--YL-QD----DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP 138 (240)
Q Consensus 77 -----------dl~~gC~~~i~~~g~~ga--~l-~~----d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~ 138 (240)
|+.-+ ...-.+|++++. +. .. .|+.|+++...+...+.|++.. +++.+..++.+++..
T Consensus 199 ~~Nt~~~~~~id~~~~-~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~---GGI~s~~da~e~i~a 274 (420)
T PRK08318 199 LINTINSITGVDLDRM-IPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGI---GGIETWRDAAEFILL 274 (420)
T ss_pred EecccCcccccccccc-CCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEee---cCcCCHHHHHHHHHh
Confidence 11100 000012443222 22 11 2677777665432113676654 899999999999999
Q ss_pred CCCEEEecCC
Q psy7344 139 HCDGIDINIG 148 (240)
Q Consensus 139 ~~d~Idin~g 148 (240)
|+|+|+|..+
T Consensus 275 GA~~Vqi~ta 284 (420)
T PRK08318 275 GAGTVQVCTA 284 (420)
T ss_pred CCChheeeee
Confidence 9999999877
No 41
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.14 E-value=7.1e-11 Score=105.14 Aligned_cols=138 Identities=10% Similarity=0.065 Sum_probs=92.4
Q ss_pred CCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCccccc-----cCchhhhhhh
Q psy7344 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDI-----NIGCPQMVAK 88 (240)
Q Consensus 14 ~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~dl-----~~gC~~~i~~ 88 (240)
++|.||||+|||..+ ++|+.|+++|+++.+++.++. +..+.|+++|.... ..+..++ ..| ...+++
T Consensus 118 ~~d~ielN~~cP~~~----~~g~~l~~~~~~~~eiv~~vr-~~~~~pv~vKi~~~---~~~~~~~a~~l~~~G-~d~i~v 188 (300)
T TIGR01037 118 YVDAYELNLSCPHVK----GGGIAIGQDPELSADVVKAVK-DKTDVPVFAKLSPN---VTDITEIAKAAEEAG-ADGLTL 188 (300)
T ss_pred ccCEEEEECCCCCCC----CCccccccCHHHHHHHHHHHH-HhcCCCEEEECCCC---hhhHHHHHHHHHHcC-CCEEEE
Confidence 489999999999964 589999999999999999999 45678999884311 1111111 233 233443
Q ss_pred hcccc------------------eee-eCCh----hhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEe
Q psy7344 89 RGHYG------------------AYL-QDDW----PLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDI 145 (240)
Q Consensus 89 ~g~~g------------------a~l-~~d~----eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idi 145 (240)
|+++. .+. ...| +.+.++...+ ..|++.. +++.+..++.++++.|+|+|++
T Consensus 189 ~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~---~ipvi~~---GGI~s~~da~~~l~~GAd~V~i 262 (300)
T TIGR01037 189 INTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV---DIPIIGV---GGITSFEDALEFLMAGASAVQV 262 (300)
T ss_pred EccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC---CCCEEEE---CCCCCHHHHHHHHHcCCCceee
Confidence 32211 111 1112 3444444332 3676654 8888888899999889999999
Q ss_pred cCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 146 NIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 146 n~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
+++ ++.+|+.+.++.+.+.+.
T Consensus 263 gr~--------------~l~~p~~~~~i~~~l~~~ 283 (300)
T TIGR01037 263 GTA--------------VYYRGFAFKKIIEGLIAF 283 (300)
T ss_pred cHH--------------HhcCchHHHHHHHHHHHH
Confidence 777 678999988888877653
No 42
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.07 E-value=1e-09 Score=97.74 Aligned_cols=96 Identities=19% Similarity=0.244 Sum_probs=83.2
Q ss_pred CceeEEeecCCHHHHHHHHHHHcc-C-CCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLAEP-H-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~le~-~-~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
.+++.+..+...+.+.+.++.+++ + +|+|++|.+||+.. + |.++.+|||.+.++++++++. .
T Consensus 97 ~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~---g--~~~l~~~~e~l~~l~~~vk~~-----------~ 160 (310)
T COG0167 97 VNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTP---G--GRALGQDPELLEKLLEAVKAA-----------T 160 (310)
T ss_pred cceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCC---C--hhhhccCHHHHHHHHHHHHhc-----------c
Confidence 456666667788899999999976 5 79999999999942 2 677888999999999999998 7
Q ss_pred CeeeEEeee--hhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 193 DINIGCPQM--VAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 193 ~~pvsvK~r--~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
++||.+|+. +++..++|+.+++ |+|+|++-.-+.
T Consensus 161 ~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~ 197 (310)
T COG0167 161 KVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTK 197 (310)
T ss_pred cCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeecc
Confidence 899999999 7788999999999 999999988665
No 43
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=98.99 E-value=2.9e-09 Score=96.38 Aligned_cols=103 Identities=9% Similarity=0.024 Sum_probs=80.1
Q ss_pred CCceeEEeecC-------CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccC
Q psy7344 114 MCGHSLMFCGN-------DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAE 186 (240)
Q Consensus 114 ~~pvivqi~g~-------d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~ 186 (240)
..|+++++.++ ..+++.+.++.+.+.+|+|+||.+||+.. |...+.+++.+.++++++++.+..+.+
T Consensus 134 ~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~------~~~~~~~~~~~~~i~~~V~~~~~~~~~ 207 (335)
T TIGR01036 134 KGPIGINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTP------GLRDLQYKAELRDLLTAVKQEQDGLRR 207 (335)
T ss_pred CCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHHHHHhhhh
Confidence 46899999766 46788888888877799999999999952 223458999999999999987210000
Q ss_pred CCCCCCCeeeEEeee--hh--cHHHHHHHHhC-CCCeEEEecccc
Q psy7344 187 PHCDGNDINIGCPQM--VA--KRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 187 ~~~~~~~~pvsvK~r--~~--~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
. .++||.+|+. ++ +..++++.+++ |+|+|++..++.
T Consensus 208 ~----~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~ 248 (335)
T TIGR01036 208 V----HRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTV 248 (335)
T ss_pred c----cCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCC
Confidence 0 1289999999 33 68899999999 999999998875
No 44
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=98.95 E-value=4.4e-09 Score=94.32 Aligned_cols=94 Identities=12% Similarity=0.147 Sum_probs=74.9
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-C-CCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-H-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~-~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
+.|+|++|.|.+++++.+.++.+++ + +|+|+||++||+.. + +..+..|++.+.++++++++.
T Consensus 92 ~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~---~--~~~~g~d~~~~~~i~~~v~~~----------- 155 (310)
T PRK02506 92 NKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVP---G--KPQIAYDFETTEQILEEVFTY----------- 155 (310)
T ss_pred CCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCC---C--ccccccCHHHHHHHHHHHHHh-----------
Confidence 4799999999999999999999976 5 89999999999942 1 344567999999999999998
Q ss_pred CCeeeEEeeeh-hcHHHHHHHH---hC-CCCeEEEec
Q psy7344 192 NDINIGCPQMV-AKRGHYGAYL---QD-DWPLLTELG 223 (240)
Q Consensus 192 ~~~pvsvK~r~-~~~~~~~~~l---~~-G~~~itih~ 223 (240)
+++||.+|+.. .+..++++.+ .. |+++|+.-.
T Consensus 156 ~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~n 192 (310)
T PRK02506 156 FTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCIN 192 (310)
T ss_pred cCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEec
Confidence 78899999992 2445555554 45 777765544
No 45
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.94 E-value=9.8e-10 Score=100.37 Aligned_cols=130 Identities=13% Similarity=0.064 Sum_probs=93.3
Q ss_pred ecccccccCCCccccccCchhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEeec--CCHHHHHHHHHHHcc-C
Q psy7344 63 MGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCG--NDSKNLTEAAKLAEP-H 139 (240)
Q Consensus 63 vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~g--~d~~~~~~aa~~le~-~ 139 (240)
+....+++||.+++|.+|+ ..+...|.-|. .....+..+ .....|+.+||++ ++++. .++++.+++ +
T Consensus 43 l~~PivlAPMagVtd~~fr--~~~~~~Galgv--vsaegl~~~-----~~~~~~~~~QI~g~~~~~~~-a~aa~~~~e~~ 112 (369)
T TIGR01304 43 FELPFIAHPMDALVSPEFA--IELGELGGLGV--LNLEGLWGR-----HEDPDPAIAKIAEAYEEGDQ-AAATRLLQELH 112 (369)
T ss_pred cCCceeecCCCcccCHHHH--HHHHHcCCccc--ccchHHHhc-----CCCHHHHHHHHhhcCCChHH-HHHHHHHHHcC
Confidence 3445688999999999997 55555443222 111111111 1112467789987 56666 778888866 2
Q ss_pred CCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehh--cHHHHHHHHhC-CC
Q psy7344 140 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVA--KRGHYGAYLQD-DW 216 (240)
Q Consensus 140 ~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~--~~~~~~~~l~~-G~ 216 (240)
.+. .+|+++.+++++++++ .|++|+|+. .+.++++.+++ |+
T Consensus 113 ~~~----------------------~~p~l~~~ii~~vr~a--------------~VtvkiRl~~~~~~e~a~~l~eAGa 156 (369)
T TIGR01304 113 AAP----------------------LKPELLGERIAEVRDS--------------GVITAVRVSPQNAREIAPIVVKAGA 156 (369)
T ss_pred CCc----------------------cChHHHHHHHHHHHhc--------------ceEEEEecCCcCHHHHHHHHHHCCC
Confidence 111 4899999999999887 399999963 68899999999 99
Q ss_pred CeEEEecccccccCCCCCCCCCC
Q psy7344 217 PLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 217 ~~itih~R~~~~~~~~~~~adw~ 239 (240)
|.|++|+||+.|.| +++.++|.
T Consensus 157 d~I~ihgrt~~q~~-~sg~~~p~ 178 (369)
T TIGR01304 157 DLLVIQGTLVSAEH-VSTSGEPL 178 (369)
T ss_pred CEEEEeccchhhhc-cCCCCCHH
Confidence 99999999999997 46778885
No 46
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=98.79 E-value=1.7e-08 Score=89.69 Aligned_cols=96 Identities=18% Similarity=0.168 Sum_probs=74.6
Q ss_pred CCceeEEeecCC---HHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 114 MCGHSLMFCGND---SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 114 ~~pvivqi~g~d---~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
..|+++++.+.+ .+++.+.++.++.++|+++||.+||+.. .+..+..+++...++++.+++.
T Consensus 96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~~~ad~lElN~ScPn~~-----~~~~~~~~~~~~~~i~~~v~~~---------- 160 (295)
T PF01180_consen 96 DIPVIASINGDSEEEIEDWAELAKRLEAGADALELNLSCPNVP-----GGRPFGQDPELVAEIVRAVREA---------- 160 (295)
T ss_dssp CEEEEEEE-TSSSGHHHHHHHHHHHHHHHCSEEEEESTSTTST-----TSGGGGGHHHHHHHHHHHHHHH----------
T ss_pred ceeEEEEeecCCchhHHHHHHHHHHhcCcCCceEEEeeccCCC-----CccccccCHHHHHHHHHHHHhc----------
Confidence 469999998888 8899999999998899999999999874 2334557899999999999987
Q ss_pred CCCeeeEEeeeh--hcH--HHHHHHHhC-CCCeEEEeccc
Q psy7344 191 GNDINIGCPQMV--AKR--GHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 191 ~~~~pvsvK~r~--~~~--~~~~~~l~~-G~~~itih~R~ 225 (240)
.++||.+|+.. .+. ...+..+.+ |+++|++-.++
T Consensus 161 -~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~ 199 (295)
T PF01180_consen 161 -VDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTF 199 (295)
T ss_dssp -HSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---E
T ss_pred -cCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCc
Confidence 78999999994 443 455666678 99999965554
No 47
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=98.78 E-value=3.7e-08 Score=86.42 Aligned_cols=172 Identities=15% Similarity=0.044 Sum_probs=104.1
Q ss_pred cccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeeccccc--------ccCCCcccccc
Q psy7344 8 RIETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFI--------AEPHCDGIDIN 79 (240)
Q Consensus 8 ~~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~--------lap~~~~~dl~ 79 (240)
|+-++.|++.|++|.|||+.+++++ |.++|++|+++. ++. +..+.|++.+.+.- .+-.+|++|-.
T Consensus 31 ~iae~~g~~~v~~~~~~psd~~~~g--g~~Rm~~p~~I~----aIk-~~V~iPVigk~Righ~~Ea~~L~~~GvDiID~T 103 (293)
T PRK04180 31 KIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIE----EIM-DAVSIPVMAKARIGHFVEAQILEALGVDYIDES 103 (293)
T ss_pred HHHHHhChHHHHHccCCCchHhhcC--CeeecCCHHHHH----HHH-HhCCCCeEEeehhhHHHHHHHHHHcCCCEEecc
Confidence 5667788999999999999999987 999999999966 556 46789999765421 11122333211
Q ss_pred CchhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEec----CCCchhhhh
Q psy7344 80 IGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDIN----IGCPQMVAK 155 (240)
Q Consensus 80 ~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin----~gCP~~~~~ 155 (240)
.+ +.-..+++..++... ..|+. .|..++.++.+.++.|+|.|-.- .| ....+.
T Consensus 104 e~--------------lrpad~~~~~~K~~f---~~~fm-----ad~~~l~EAlrai~~GadmI~Ttge~gtg-~v~~av 160 (293)
T PRK04180 104 EV--------------LTPADEEYHIDKWDF---TVPFV-----CGARNLGEALRRIAEGAAMIRTKGEAGTG-NVVEAV 160 (293)
T ss_pred CC--------------CCchHHHHHHHHHHc---CCCEE-----ccCCCHHHHHHHHHCCCCeeeccCCCCCc-cHHHHH
Confidence 10 000124444444332 24544 45666777888888877776543 11 000000
Q ss_pred c------------ccc--------cccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeE--EeeehhcHHHHHHHHh
Q psy7344 156 R------------GHY--------GAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIG--CPQMVAKRGHYGAYLQ 213 (240)
Q Consensus 156 ~------------~g~--------G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvs--vK~r~~~~~~~~~~l~ 213 (240)
+ .|| ......+++.++++.+. .++||. +-..+.+..+..+.++
T Consensus 161 ~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~---------------~~iPVV~~AeGGI~TPedaa~vme 225 (293)
T PRK04180 161 RHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAEL---------------GRLPVVNFAAGGIATPADAALMMQ 225 (293)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHh---------------CCCCEEEEEeCCCCCHHHHHHHHH
Confidence 0 000 00134678888777764 456775 6666766777777775
Q ss_pred CCCCeEEEeccc
Q psy7344 214 DDWPLLTELGKM 225 (240)
Q Consensus 214 ~G~~~itih~R~ 225 (240)
.|++++.+ ++.
T Consensus 226 ~GAdgVaV-GSa 236 (293)
T PRK04180 226 LGADGVFV-GSG 236 (293)
T ss_pred hCCCEEEE-cHH
Confidence 59999988 543
No 48
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.77 E-value=1.4e-08 Score=90.16 Aligned_cols=145 Identities=13% Similarity=0.136 Sum_probs=92.2
Q ss_pred ccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccc-----------cCCCcccc
Q psy7344 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIA-----------EPHCDGID 77 (240)
Q Consensus 9 ~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~l-----------ap~~~~~d 77 (240)
.+.+.++|.|+||++||..+ +.|+.++++|+++.+++.++. +..+.|+++|..... .--++.++
T Consensus 110 ~~~~~G~d~iElN~~cP~~~----~~g~~~~~~~~~~~eiv~~vr-~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~ 184 (296)
T cd04740 110 KLADAGADAIELNISCPNVK----GGGMAFGTDPEAVAEIVKAVK-KATDVPVIVKLTPNVTDIVEIARAAEEAGADGLT 184 (296)
T ss_pred HHHHcCCCEEEEECCCCCCC----CCcccccCCHHHHHHHHHHHH-hccCCCEEEEeCCCchhHHHHHHHHHHcCCCEEE
Confidence 34556799999999999852 348999999999999999999 455889998732100 01112221
Q ss_pred c-c--Cchhhhhhh-------hcccceee-eC----ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCE
Q psy7344 78 I-N--IGCPQMVAK-------RGHYGAYL-QD----DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDG 142 (240)
Q Consensus 78 l-~--~gC~~~i~~-------~g~~ga~l-~~----d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~ 142 (240)
+ | .| ..+.. ...+|.+. .. .+++++++...+ +.|++.. +++.+..++.++++.|+|+
T Consensus 185 ~~nt~~g--~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~---~ipii~~---GGI~~~~da~~~l~~GAd~ 256 (296)
T cd04740 185 LINTLKG--MAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV---EIPIIGV---GGIASGEDALEFLMAGASA 256 (296)
T ss_pred EECCCcc--cccccccCceeecCCcceecCcccchHHHHHHHHHHHhc---CCCEEEE---CCCCCHHHHHHHHHcCCCE
Confidence 1 1 00 00000 00011111 11 235566655433 3676654 7777778888998889999
Q ss_pred EEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 143 IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 143 Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
|++.++ ++.+|+.+.++.+.+.+-
T Consensus 257 V~igra--------------~l~~p~~~~~i~~~l~~~ 280 (296)
T cd04740 257 VQVGTA--------------NFVDPEAFKEIIEGLEAY 280 (296)
T ss_pred EEEchh--------------hhcChHHHHHHHHHHHHH
Confidence 999776 566999999998877653
No 49
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=98.72 E-value=1.9e-08 Score=89.64 Aligned_cols=146 Identities=14% Similarity=0.112 Sum_probs=91.7
Q ss_pred ccccCC-CCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccc-----------cCCCccc
Q psy7344 9 IETEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIA-----------EPHCDGI 76 (240)
Q Consensus 9 ~~~~~~-~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~l-----------ap~~~~~ 76 (240)
.+.+.+ +|.|+||++||+.. + .|..+.++++++.+++.++. +..+.|+++|..... +-.++.+
T Consensus 112 ~~~~aG~~D~iElN~~cP~~~---~-gg~~~~~~~~~~~eiv~~vr-~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i 186 (301)
T PRK07259 112 KLSKAPNVDAIELNISCPNVK---H-GGMAFGTDPELAYEVVKAVK-EVVKVPVIVKLTPNVTDIVEIAKAAEEAGADGL 186 (301)
T ss_pred HHhccCCcCEEEEECCCCCCC---C-CccccccCHHHHHHHHHHHH-HhcCCCEEEEcCCCchhHHHHHHHHHHcCCCEE
Confidence 345566 99999999999842 2 37889999999999999999 466889998742110 0112222
Q ss_pred cc-cCchhhhhhhh-------ccccee----e-eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEE
Q psy7344 77 DI-NIGCPQMVAKR-------GHYGAY----L-QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGI 143 (240)
Q Consensus 77 dl-~~gC~~~i~~~-------g~~ga~----l-~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~I 143 (240)
++ |.-....+..+ ..+|.+ + ...++++.++...+ +.|++.. +++.+..++.++++.|+|.|
T Consensus 187 ~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~---~ipvi~~---GGI~~~~da~~~l~aGAd~V 260 (301)
T PRK07259 187 SLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV---DIPIIGM---GGISSAEDAIEFIMAGASAV 260 (301)
T ss_pred EEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhC---CCCEEEE---CCCCCHHHHHHHHHcCCCce
Confidence 11 10000000000 001111 1 11345666655443 4677655 77778888888888899999
Q ss_pred EecCCCchhhhhcccccccccCCHHHHHHHHHHhhh
Q psy7344 144 DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 144 din~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~ 179 (240)
++.++ ++.+|+.+.++.+.+..
T Consensus 261 ~igr~--------------ll~~P~~~~~i~~~l~~ 282 (301)
T PRK07259 261 QVGTA--------------NFYDPYAFPKIIEGLEA 282 (301)
T ss_pred eEcHH--------------HhcCcHHHHHHHHHHHH
Confidence 99766 56799999999887754
No 50
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=98.69 E-value=7e-08 Score=86.08 Aligned_cols=97 Identities=8% Similarity=-0.030 Sum_probs=73.7
Q ss_pred CceeEEeecC-CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 115 CGHSLMFCGN-DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 115 ~pvivqi~g~-d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
.|+.+|+.+. |++.+.++++.+++ ++++|++|++||+.... ..|+.++++ ++. +
T Consensus 116 ~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~---------~~~~~i~~l----~~~-----------~ 171 (299)
T cd02809 116 GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRR---------LTWDDLAWL----RSQ-----------W 171 (299)
T ss_pred CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC---------CCHHHHHHH----HHh-----------c
Confidence 6899999876 89988888888765 89999999999974211 356555444 444 5
Q ss_pred CeeeEEeeehhcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 193 DINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 193 ~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
++||++|.. .+.+.++.+++ |+|+|++|++...|.+ .+.++|+
T Consensus 172 ~~pvivK~v--~s~~~a~~a~~~G~d~I~v~~~gG~~~~--~g~~~~~ 215 (299)
T cd02809 172 KGPLILKGI--LTPEDALRAVDAGADGIVVSNHGGRQLD--GAPATID 215 (299)
T ss_pred CCCEEEeec--CCHHHHHHHHHCCCCEEEEcCCCCCCCC--CCcCHHH
Confidence 789999975 33567899999 9999999998877763 4666663
No 51
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.69 E-value=5.8e-08 Score=86.45 Aligned_cols=141 Identities=6% Similarity=0.004 Sum_probs=86.4
Q ss_pred CCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeeccccccc--CCCccccc--cC--chhhhhh
Q psy7344 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAE--PHCDGIDI--NI--GCPQMVA 87 (240)
Q Consensus 14 ~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~la--p~~~~~dl--~~--gC~~~i~ 87 (240)
++|.||||++||+.. + +..+.+||+++.+++.++. +..+.|+++|..-... ......+. .. | ...++
T Consensus 119 ~ad~ielN~sCPn~~----~-~~~~~~~~~~~~~i~~~v~-~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G-~~gi~ 191 (294)
T cd04741 119 FPLAMELNLSCPNVP----G-KPPPAYDFDATLEYLTAVK-AAYSIPVGVKTPPYTDPAQFDTLAEALNAFACP-ISFIT 191 (294)
T ss_pred cccEEEEECCCCCCC----C-cccccCCHHHHHHHHHHHH-HhcCCCEEEEeCCCCCHHHHHHHHHHHhccccC-CcEEE
Confidence 589999999999942 1 1247789999999999999 4678999998431110 00000000 11 1 01111
Q ss_pred ----------hhc-----------ccceee--eCC---hhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCC
Q psy7344 88 ----------KRG-----------HYGAYL--QDD---WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCD 141 (240)
Q Consensus 88 ----------~~g-----------~~ga~l--~~d---~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d 141 (240)
+|. +||-+. .-+ +..++++...+. .+.|++.. +++.+..++.+++..|+|
T Consensus 192 ~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~-~~ipIig~---GGI~s~~da~e~l~aGA~ 267 (294)
T cd04741 192 ATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLP-SEIQIIGV---GGVLDGRGAFRMRLAGAS 267 (294)
T ss_pred EEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcC-CCCCEEEe---CCCCCHHHHHHHHHcCCC
Confidence 111 111111 001 233344433331 13676655 899999999999999999
Q ss_pred EEEecCCCchhhhhccccccccc-CCHHHHHHHHHHhhh
Q psy7344 142 GIDINIGCPQMVAKRGHYGAYLQ-DDWPLLTNLVYSPNM 179 (240)
Q Consensus 142 ~Idin~gCP~~~~~~~g~G~~l~-~~p~~i~~iv~~~~~ 179 (240)
+|++..+ ++ .+|+.+.+|.+.+++
T Consensus 268 ~Vqv~ta--------------~~~~gp~~~~~i~~~L~~ 292 (294)
T cd04741 268 AVQVGTA--------------LGKEGPKVFARIEKELED 292 (294)
T ss_pred ceeEchh--------------hhhcCchHHHHHHHHHHh
Confidence 9999766 33 589999999887754
No 52
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=98.65 E-value=1e-07 Score=86.37 Aligned_cols=93 Identities=18% Similarity=0.197 Sum_probs=72.7
Q ss_pred HHHHHHHHHHc-cCCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAE-PHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le-~~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|+.+. .|+|+|+||.|| |........+|+.|..++..+.++++++++.+ |.++||
T Consensus 154 ~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~v---------G~d~~v 224 (336)
T cd02932 154 DAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVW---------PEDKPL 224 (336)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHc---------CCCceE
Confidence 45667777764 489999999998 54333445678889999999999999999982 137899
Q ss_pred EEeee----------hhcHHHHHHHHhC-CCCeEEEe--cccccc
Q psy7344 197 GCPQM----------VAKRGHYGAYLQD-DWPLLTEL--GKMAML 228 (240)
Q Consensus 197 svK~r----------~~~~~~~~~~l~~-G~~~itih--~R~~~~ 228 (240)
++|++ .+++.++++.|++ |+|+|.+| +++..+
T Consensus 225 ~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~ 269 (336)
T cd02932 225 FVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQ 269 (336)
T ss_pred EEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCccc
Confidence 99988 2356789999999 99999998 455544
No 53
>PLN02826 dihydroorotate dehydrogenase
Probab=98.63 E-value=1.6e-07 Score=87.06 Aligned_cols=103 Identities=9% Similarity=-0.042 Sum_probs=78.1
Q ss_pred ceeEEeecC-----CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 116 GHSLMFCGN-----DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 116 pvivqi~g~-----d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
|++++|+++ .++++.+.++.+...+|+|+||.+||+.. +. ..+.+++.+.++++++++....+.+. .
T Consensus 188 ~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylelNiScPNtp----gl--r~lq~~~~l~~ll~~V~~~~~~~~~~--~ 259 (409)
T PLN02826 188 ILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINVSSPNTP----GL--RKLQGRKQLKDLLKKVLAARDEMQWG--E 259 (409)
T ss_pred eEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEEECCCCCCC----Cc--ccccChHHHHHHHHHHHHHHHHhhhc--c
Confidence 899999776 57888888888887899999999999952 22 23578999999999887541111000 0
Q ss_pred CCCeeeEEeee--hh--cHHHHHHHHhC-CCCeEEEecccc
Q psy7344 191 GNDINIGCPQM--VA--KRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 191 ~~~~pvsvK~r--~~--~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
..++||.+|+. ++ +..++++.+++ |+|+|++-.+|.
T Consensus 260 ~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~ 300 (409)
T PLN02826 260 EGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTI 300 (409)
T ss_pred ccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence 13589999997 33 57889999999 999999988764
No 54
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.63 E-value=9.8e-08 Score=86.53 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHcc-CCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCe
Q psy7344 125 DSKNLTEAAKLAEP-HCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDI 194 (240)
Q Consensus 125 d~~~~~~aa~~le~-~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~ 194 (240)
.++++.++|+.+.+ |+|+|+||.|| |..-.....||..|..++..+.++++++++++ +.++
T Consensus 147 ~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~av---------G~d~ 217 (338)
T cd04733 147 VIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAV---------GPGF 217 (338)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHc---------CCCC
Confidence 45667788888755 89999999998 65322334567779899999999999999983 2368
Q ss_pred eeEEeee----------hhcHHHHHHHHhC-CCCeEEEecccccccC
Q psy7344 195 NIGCPQM----------VAKRGHYGAYLQD-DWPLLTELGKMAMLVG 230 (240)
Q Consensus 195 pvsvK~r----------~~~~~~~~~~l~~-G~~~itih~R~~~~~~ 230 (240)
||.+|+. .+++.++++.|++ |+|+|.||+|+..+..
T Consensus 218 ~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~ 264 (338)
T cd04733 218 PVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPA 264 (338)
T ss_pred eEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCcc
Confidence 9999996 2456789999999 9999999999876653
No 55
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=98.63 E-value=1.8e-08 Score=89.01 Aligned_cols=142 Identities=10% Similarity=0.084 Sum_probs=87.7
Q ss_pred ccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeeccccccc--CCCcccc--ccCchhh
Q psy7344 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAE--PHCDGID--INIGCPQ 84 (240)
Q Consensus 9 ~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~la--p~~~~~d--l~~gC~~ 84 (240)
.+.+.++|.|+||++||.... +..++++++++.+++.++. +..+.|+++|...... ......+ ...| ..
T Consensus 119 ~~~~~G~d~ielN~~cP~~~~-----~~~~~~~~~~~~eiv~~vr-~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~G-ad 191 (289)
T cd02810 119 KIERAGAKALELNLSCPNVGG-----GRQLGQDPEAVANLLKAVK-AAVDIPLLVKLSPYFDLEDIVELAKAAERAG-AD 191 (289)
T ss_pred HHHHhCCCEEEEEcCCCCCCC-----CcccccCHHHHHHHHHHHH-HccCCCEEEEeCCCCCHHHHHHHHHHHHHcC-CC
Confidence 344557999999999998543 3338899999999999999 4568899987432111 0000000 1233 23
Q ss_pred hhhhhcccce-----------------eee------CChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCC
Q psy7344 85 MVAKRGHYGA-----------------YLQ------DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCD 141 (240)
Q Consensus 85 ~i~~~g~~ga-----------------~l~------~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d 141 (240)
.++.++++.. .+. ..+++++++...+. .+.|++.. +++.+..++.+++..|+|
T Consensus 192 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~-~~ipiia~---GGI~~~~da~~~l~~GAd 267 (289)
T cd02810 192 GLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQ-LDIPIIGV---GGIDSGEDVLEMLMAGAS 267 (289)
T ss_pred EEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcC-CCCCEEEE---CCCCCHHHHHHHHHcCcc
Confidence 3333332211 000 01344555544331 13666654 778888888899888999
Q ss_pred EEEecCCCchhhhhcccccccccCC-HHHHHHHHH
Q psy7344 142 GIDINIGCPQMVAKRGHYGAYLQDD-WPLLTNLVY 175 (240)
Q Consensus 142 ~Idin~gCP~~~~~~~g~G~~l~~~-p~~i~~iv~ 175 (240)
+|+++++ ++.| |+.+.++.+
T Consensus 268 ~V~vg~a--------------~~~~GP~~~~~i~~ 288 (289)
T cd02810 268 AVQVATA--------------LMWDGPDVIRKIKK 288 (289)
T ss_pred HheEcHH--------------HHhcCccHHHHHhc
Confidence 9988666 6678 998888764
No 56
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=98.60 E-value=1.1e-07 Score=86.37 Aligned_cols=89 Identities=16% Similarity=0.187 Sum_probs=71.9
Q ss_pred HHHHHHHHHHcc-CCCEEEecCC---------CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~g---------CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+.+.++|+.+.+ |+|+|+||.| ||..-.....||..|......+.+|++++++. .+.||
T Consensus 142 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~-----------~~~~v 210 (337)
T PRK13523 142 LAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEV-----------WDGPL 210 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHh-----------cCCCe
Confidence 456667777755 8999999999 78653344556767888888999999999998 56799
Q ss_pred EEeeeh----------hcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 197 GCPQMV----------AKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 197 svK~r~----------~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
++|++. ++..++++.|++ |+|+|+||+++.
T Consensus 211 ~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~ 251 (337)
T PRK13523 211 FVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAV 251 (337)
T ss_pred EEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCC
Confidence 999993 346789999999 999999999984
No 57
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=98.58 E-value=1.7e-07 Score=84.85 Aligned_cols=144 Identities=10% Similarity=0.020 Sum_probs=91.5
Q ss_pred cccccccCCCccccccCch----hhhhhhhc---ccceee--eCChhhHHHhhhcccC--CCCceeEEeecC-----CHH
Q psy7344 64 GPLFIAEPHCDGIDINIGC----PQMVAKRG---HYGAYL--QDDWPLLTELGFKTRS--HMCGHSLMFCGN-----DSK 127 (240)
Q Consensus 64 k~~~~lap~~~~~dl~~gC----~~~i~~~g---~~ga~l--~~d~eli~~i~~~~~~--~~~pvivqi~g~-----d~~ 127 (240)
+.+.+++||.+..+....- .......| .+|+.- ..+++..... ..++. .+.|++++++.. +++
T Consensus 53 ~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~ 131 (333)
T TIGR02151 53 KAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPETADTF-EVVREEAPNGPLIANIGAPQLVEGGPE 131 (333)
T ss_pred cCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhhHhHH-HHHHHhCCCCcEEeecCchhhccccHH
Confidence 3456778888777442210 11112223 233311 2356655443 22221 357999988643 234
Q ss_pred HHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee-hhcHH
Q psy7344 128 NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-VAKRG 206 (240)
Q Consensus 128 ~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-~~~~~ 206 (240)
+..++++++ .+|+++||+.|++......+. .+++...+.++.+++. +++||.+|.. ...+.
T Consensus 132 ~~~~~i~~i--~adal~i~ln~~q~~~~p~g~-----~~f~~~le~i~~i~~~-----------~~vPVivK~~g~g~~~ 193 (333)
T TIGR02151 132 EAQEAIDMI--EADALAIHLNVLQELVQPEGD-----RNFKGWLEKIAEICSQ-----------LSVPVIVKEVGFGISK 193 (333)
T ss_pred HHHHHHHHh--cCCCEEEcCcccccccCCCCC-----cCHHHHHHHHHHHHHh-----------cCCCEEEEecCCCCCH
Confidence 455555555 578999999999877666654 3455555677777776 6889999987 44568
Q ss_pred HHHHHHhC-CCCeEEEecccc
Q psy7344 207 HYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 207 ~~~~~l~~-G~~~itih~R~~ 226 (240)
+.++.|++ |+|+|++|||..
T Consensus 194 ~~a~~L~~aGvd~I~Vsg~gG 214 (333)
T TIGR02151 194 EVAKLLADAGVSAIDVAGAGG 214 (333)
T ss_pred HHHHHHHHcCCCEEEECCCCC
Confidence 99999999 999999999864
No 58
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=98.55 E-value=3e-07 Score=83.85 Aligned_cols=144 Identities=10% Similarity=0.019 Sum_probs=93.0
Q ss_pred cccccccCCCccccccCch----hhhhhhhc---ccceee--eCChhhHHHhhhcccC--CCCceeEEeecC-----CHH
Q psy7344 64 GPLFIAEPHCDGIDINIGC----PQMVAKRG---HYGAYL--QDDWPLLTELGFKTRS--HMCGHSLMFCGN-----DSK 127 (240)
Q Consensus 64 k~~~~lap~~~~~dl~~gC----~~~i~~~g---~~ga~l--~~d~eli~~i~~~~~~--~~~pvivqi~g~-----d~~ 127 (240)
+.+.+++||.++.+....- .......| .+|+.- ..+++ +.+-...++. .+.|++++|+.. +++
T Consensus 60 ~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~ 138 (352)
T PRK05437 60 SAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVE 138 (352)
T ss_pred cCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChh-hHHHHHHHHHHCCCceEEeecCccccCCCCHH
Confidence 3456778898877532211 11223333 344421 23466 3332222222 257999988653 345
Q ss_pred HHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee-hhcHH
Q psy7344 128 NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-VAKRG 206 (240)
Q Consensus 128 ~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-~~~~~ 206 (240)
...++++++ ++|+++||++|++......+. .+++.+.+.++++++. +++||.+|+. ...+.
T Consensus 139 ~~~~~~~~~--~adal~l~l~~~qe~~~p~g~-----~~f~~~le~i~~i~~~-----------~~vPVivK~~g~g~s~ 200 (352)
T PRK05437 139 EAQRAVEMI--EADALQIHLNPLQELVQPEGD-----RDFRGWLDNIAEIVSA-----------LPVPVIVKEVGFGISK 200 (352)
T ss_pred HHHHHHHhc--CCCcEEEeCccchhhcCCCCc-----ccHHHHHHHHHHHHHh-----------hCCCEEEEeCCCCCcH
Confidence 555555554 579999999998876665543 4676666777877776 6889999998 44557
Q ss_pred HHHHHHhC-CCCeEEEecccc
Q psy7344 207 HYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 207 ~~~~~l~~-G~~~itih~R~~ 226 (240)
+.++.+++ |+|+|.++|+..
T Consensus 201 ~~a~~l~~~Gvd~I~Vsg~GG 221 (352)
T PRK05437 201 ETAKRLADAGVKAIDVAGAGG 221 (352)
T ss_pred HHHHHHHHcCCCEEEECCCCC
Confidence 99999999 999999999853
No 59
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.52 E-value=2.7e-07 Score=82.97 Aligned_cols=95 Identities=19% Similarity=0.232 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHcc-CCCEEEecCC---------CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 126 SKNLTEAAKLAEP-HCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 126 ~~~~~~aa~~le~-~~d~Idin~g---------CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++++.++|+.+.+ |+|+|+||.+ ||..-.....+|+.+..++..+.++++++++.+ +.++|
T Consensus 140 i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~---------g~d~~ 210 (327)
T cd02803 140 IEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAV---------GPDFP 210 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHc---------CCCce
Confidence 3456677777654 8999999999 554323344577778888899999999999972 13789
Q ss_pred eEEeeeh----------hcHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 196 IGCPQMV----------AKRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 196 vsvK~r~----------~~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
|.+|++. +++.++++.|++ |+|+|.+|+++..+.
T Consensus 211 i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~ 255 (327)
T cd02803 211 VGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESP 255 (327)
T ss_pred EEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCccc
Confidence 9999992 346788999999 999999999997764
No 60
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=98.52 E-value=2.7e-07 Score=83.88 Aligned_cols=88 Identities=14% Similarity=0.195 Sum_probs=66.1
Q ss_pred HHHHHHHHHHcc-CCCEEEecC--CC-------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINI--GC-------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~--gC-------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|+.+.+ |+|+||||. || |..-.....||+++..+...+.+|++++++. +..++
T Consensus 141 ~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~-----------vg~~~ 209 (343)
T cd04734 141 AAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAA-----------VGPDF 209 (343)
T ss_pred HHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHH-----------cCCCC
Confidence 456777777654 899999999 65 4333233568888988999999999999998 44455
Q ss_pred EEeeeh------------hcHHHHHHHHhC-C-CCeEEEeccc
Q psy7344 197 GCPQMV------------AKRGHYGAYLQD-D-WPLLTELGKM 225 (240)
Q Consensus 197 svK~r~------------~~~~~~~~~l~~-G-~~~itih~R~ 225 (240)
++|+|+ +++.++++.|++ | +|+|+||+++
T Consensus 210 ~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~ 252 (343)
T cd04734 210 IVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGS 252 (343)
T ss_pred eEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCC
Confidence 555552 246789999999 9 8999996544
No 61
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=98.47 E-value=6.6e-07 Score=82.51 Aligned_cols=94 Identities=17% Similarity=0.210 Sum_probs=72.2
Q ss_pred HHHHHHHHHHcc-CCCEEEecC---CCc-------hhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINI---GCP-------QMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~---gCP-------~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
+++.++|+++.+ |+|||+|+. ||. ..-.....||+.|......+.+|++++++.+ +.++|
T Consensus 150 ~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~---------g~~f~ 220 (382)
T cd02931 150 GKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARC---------GEDFP 220 (382)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhc---------CCCce
Confidence 456777887765 899999998 873 1111223477788889999999999999972 13689
Q ss_pred eEEeeeh------------------------hcHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 196 IGCPQMV------------------------AKRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 196 vsvK~r~------------------------~~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
|++|++. +++.++++.|++ |+|+|.+|+++..+.
T Consensus 221 v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~ 279 (382)
T cd02931 221 VSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAW 279 (382)
T ss_pred EEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCccc
Confidence 9999982 345689999999 999999999986553
No 62
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.44 E-value=5.7e-07 Score=89.75 Aligned_cols=93 Identities=12% Similarity=0.148 Sum_probs=73.8
Q ss_pred HHHHHHHHHHcc-CCCEEEecCC---------CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~g---------CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|+.+.+ |+|+||||+| ||........||..+......+.+|++++++++ +.++||
T Consensus 551 ~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~---------~~~~~v 621 (765)
T PRK08255 551 DDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVW---------PAEKPM 621 (765)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhc---------CCCCee
Confidence 346667777644 8999999999 998655556688888788888999999999973 246899
Q ss_pred EEeeeh----------hcHHHHHHHHhC-CCCeEEEe-cccccc
Q psy7344 197 GCPQMV----------AKRGHYGAYLQD-DWPLLTEL-GKMAML 228 (240)
Q Consensus 197 svK~r~----------~~~~~~~~~l~~-G~~~itih-~R~~~~ 228 (240)
++|++. +++.++++.|++ |+|.|+|| ||+..+
T Consensus 622 ~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~ 665 (765)
T PRK08255 622 SVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKD 665 (765)
T ss_pred EEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcC
Confidence 999992 356789999999 99999999 566543
No 63
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=98.39 E-value=8e-08 Score=87.39 Aligned_cols=142 Identities=15% Similarity=0.047 Sum_probs=88.8
Q ss_pred CCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCC-----Cceeeccccccc--CCCcccc--ccCchh
Q psy7344 13 PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKN-----GPLFMGPLFIAE--PHCDGID--INIGCP 83 (240)
Q Consensus 13 ~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~-----~p~~vk~~~~la--p~~~~~d--l~~gC~ 83 (240)
.++|.|+||++||..+ |...+++++.+.+++.++. +..+ .|+++|-.-... ....... ...| .
T Consensus 168 ~~ad~lelN~scP~~~------g~~~~~~~~~~~eiv~aVr-~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~G-a 239 (344)
T PRK05286 168 PYADYFTVNISSPNTP------GLRDLQYGEALDELLAALK-EAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHG-I 239 (344)
T ss_pred hhCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHH-HHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhC-C
Confidence 3589999999999865 2334899999999999998 4555 899988431110 0000000 1233 2
Q ss_pred hhhhhhcccc---------------eee-----eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEE
Q psy7344 84 QMVAKRGHYG---------------AYL-----QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGI 143 (240)
Q Consensus 84 ~~i~~~g~~g---------------a~l-----~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~I 143 (240)
+.++.++++. .+. ...++.++.+...+. .+.|++.. +++.+..++.+++..|+|.|
T Consensus 240 dgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~-~~ipIig~---GGI~s~eda~e~l~aGAd~V 315 (344)
T PRK05286 240 DGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELG-GRLPIIGV---GGIDSAEDAYEKIRAGASLV 315 (344)
T ss_pred cEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhC-CCCCEEEE---CCCCCHHHHHHHHHcCCCHH
Confidence 3444444321 111 012445555554432 13576654 88888889999998889998
Q ss_pred EecCCCchhhhhcccccccccC-CHHHHHHHHHHhhhc
Q psy7344 144 DINIGCPQMVAKRGHYGAYLQD-DWPLLTNLVYSPNMV 180 (240)
Q Consensus 144 din~gCP~~~~~~~g~G~~l~~-~p~~i~~iv~~~~~~ 180 (240)
++..+ ++. +|+.+.+|.+.+.+-
T Consensus 316 ~v~~~--------------~~~~gP~~~~~i~~~L~~~ 339 (344)
T PRK05286 316 QIYSG--------------LIYEGPGLVKEIVRGLARL 339 (344)
T ss_pred HHHHH--------------HHHhCchHHHHHHHHHHHH
Confidence 88655 434 599999998877653
No 64
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=98.37 E-value=1.5e-07 Score=85.05 Aligned_cols=136 Identities=15% Similarity=0.034 Sum_probs=84.0
Q ss_pred CCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCC-----CceeecccccccCCCccccc-----cCchh
Q psy7344 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKN-----GPLFMGPLFIAEPHCDGIDI-----NIGCP 83 (240)
Q Consensus 14 ~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~-----~p~~vk~~~~lap~~~~~dl-----~~gC~ 83 (240)
++|.|+||++||..+ |...+++++.+.+++.++. +..+ .|+++|...... ..+..++ ..| .
T Consensus 160 ~ad~ielN~scP~~~------g~~~~~~~~~~~~iv~av~-~~~~~~~~~~Pv~vKl~~~~~-~~~~~~ia~~l~~aG-a 230 (327)
T cd04738 160 YADYLVVNVSSPNTP------GLRDLQGKEALRELLTAVK-EERNKLGKKVPLLVKIAPDLS-DEELEDIADVALEHG-V 230 (327)
T ss_pred hCCEEEEECCCCCCC------ccccccCHHHHHHHHHHHH-HHHhhcccCCCeEEEeCCCCC-HHHHHHHHHHHHHcC-C
Confidence 489999999999853 3445899999999999998 3444 899988421110 0011111 223 2
Q ss_pred hhhhhhcccc---------------eee-e----CChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEE
Q psy7344 84 QMVAKRGHYG---------------AYL-Q----DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGI 143 (240)
Q Consensus 84 ~~i~~~g~~g---------------a~l-~----~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~I 143 (240)
+.++.++++. .+. . ..++.+..+...+. .+.|++.. +++.+..++.+++..|+|.|
T Consensus 231 d~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~-~~ipIi~~---GGI~t~~da~e~l~aGAd~V 306 (327)
T cd04738 231 DGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTG-GKIPIIGV---GGISSGEDAYEKIRAGASLV 306 (327)
T ss_pred cEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhC-CCCcEEEE---CCCCCHHHHHHHHHcCCCHH
Confidence 3343333221 111 0 11455555544432 13566654 88888889999998889999
Q ss_pred EecCCCchhhhhcccccccccC-CHHHHHHHHHH
Q psy7344 144 DINIGCPQMVAKRGHYGAYLQD-DWPLLTNLVYS 176 (240)
Q Consensus 144 din~gCP~~~~~~~g~G~~l~~-~p~~i~~iv~~ 176 (240)
++..+ ++. .|+.+.+|.+.
T Consensus 307 ~vg~~--------------~~~~gP~~~~~i~~~ 326 (327)
T cd04738 307 QLYTG--------------LVYEGPGLVKRIKRE 326 (327)
T ss_pred hccHH--------------HHhhCcHHHHHHHhc
Confidence 88665 334 59999888764
No 65
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=98.35 E-value=1.5e-06 Score=78.94 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHcc-CCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 126 SKNLTEAAKLAEP-HCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 126 ~~~~~~aa~~le~-~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++.+.++|+.+.+ |+|+|+||.|| |..--....||..+......+.+|++++++.+ +.+ |
T Consensus 151 i~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~v---------g~d-~ 220 (338)
T cd02933 151 VADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAI---------GAD-R 220 (338)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHh---------CCC-c
Confidence 3456677777755 89999999999 64222233456668788889999999999973 123 7
Q ss_pred eEEeeeh-------------hcHHHHHHHHhC-CCCeEEE-ecccccc
Q psy7344 196 IGCPQMV-------------AKRGHYGAYLQD-DWPLLTE-LGKMAML 228 (240)
Q Consensus 196 vsvK~r~-------------~~~~~~~~~l~~-G~~~iti-h~R~~~~ 228 (240)
|++|++. +++.++++.|++ |+|.|.| |+++..+
T Consensus 221 v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~ 268 (338)
T cd02933 221 VGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGN 268 (338)
T ss_pred eEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 9999972 235689999999 9999999 8887654
No 66
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=98.32 E-value=1.9e-06 Score=77.82 Aligned_cols=93 Identities=9% Similarity=-0.002 Sum_probs=68.5
Q ss_pred CCceeEEeecC-----CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCC
Q psy7344 114 MCGHSLMFCGN-----DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPH 188 (240)
Q Consensus 114 ~~pvivqi~g~-----d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~ 188 (240)
+.|++++++.. +++++.++.+++ ++|+++||.+|++......+. .|++.+.+.++.+++.
T Consensus 112 ~~p~~~Nl~~~~~~~~~~~~~~~~i~~~--~adalel~l~~~q~~~~~~~~-----~df~~~~~~i~~l~~~-------- 176 (326)
T cd02811 112 NGPLIANLGAVQLNGYGVEEARRAVEMI--EADALAIHLNPLQEAVQPEGD-----RDFRGWLERIEELVKA-------- 176 (326)
T ss_pred CceEEeecCccccCCCCHHHHHHHHHhc--CCCcEEEeCcchHhhcCCCCC-----cCHHHHHHHHHHHHHh--------
Confidence 47888888653 445455444444 589999999988876555432 4666555666766666
Q ss_pred CCCCCeeeEEeee-hhcHHHHHHHHhC-CCCeEEEecc
Q psy7344 189 CDGNDINIGCPQM-VAKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 189 ~~~~~~pvsvK~r-~~~~~~~~~~l~~-G~~~itih~R 224 (240)
.++||.+|.. ...+.+.++.|++ |+|+|.++|+
T Consensus 177 ---~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~ 211 (326)
T cd02811 177 ---LSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGA 211 (326)
T ss_pred ---cCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCC
Confidence 6889999997 4456789999999 9999999996
No 67
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.29 E-value=1.8e-06 Score=78.73 Aligned_cols=96 Identities=18% Similarity=0.125 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHcc-CCCEEEecCC---------CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 126 SKNLTEAAKLAEP-HCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 126 ~~~~~~aa~~le~-~~d~Idin~g---------CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++++.++|+.+.+ |+|+|+||++ ||........||.++..+...+.+|++++++++. . + .+.+++
T Consensus 143 i~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg---~-~-~~~~~~ 217 (353)
T cd04735 143 IDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVID---K-H-ADKDFI 217 (353)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhc---c-c-cCCCce
Confidence 3456777777755 8999999986 6865444456777788888999999999999830 0 0 002455
Q ss_pred eEEeeeh----------hcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 196 IGCPQMV----------AKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 196 vsvK~r~----------~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
|.+|+.. +++.++++.|++ |+|+|+||+.+.
T Consensus 218 v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~ 259 (353)
T cd04735 218 LGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDF 259 (353)
T ss_pred EEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCcc
Confidence 6665552 356789999999 999999998654
No 68
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=98.27 E-value=1e-06 Score=77.38 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=61.0
Q ss_pred HHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHH
Q psy7344 130 TEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHY 208 (240)
Q Consensus 130 ~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~ 208 (240)
.+.+++.|+ |++.||+|.|||+.....+ |.+++.+|+.+++|.++ +++||++|.|+.. ..-
T Consensus 27 ~~~a~iae~~g~~~v~~~~~~psd~~~~g--g~~Rm~~p~~I~aIk~~---------------V~iPVigk~Righ-~~E 88 (293)
T PRK04180 27 AEQAKIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIEEIMDA---------------VSIPVMAKARIGH-FVE 88 (293)
T ss_pred HHHHHHHHHhChHHHHHccCCCchHhhcC--CeeecCCHHHHHHHHHh---------------CCCCeEEeehhhH-HHH
Confidence 357788877 8999999999999876655 88899999999866654 6889999999654 556
Q ss_pred HHHHhC-CCCeEEE
Q psy7344 209 GAYLQD-DWPLLTE 221 (240)
Q Consensus 209 ~~~l~~-G~~~iti 221 (240)
++.|++ |+|.|--
T Consensus 89 a~~L~~~GvDiID~ 102 (293)
T PRK04180 89 AQILEALGVDYIDE 102 (293)
T ss_pred HHHHHHcCCCEEec
Confidence 788899 9999953
No 69
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=98.14 E-value=1.7e-05 Score=72.18 Aligned_cols=153 Identities=12% Similarity=0.088 Sum_probs=95.1
Q ss_pred cccCCCCeecccC--CCc-----hhhh--hccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCccccccC
Q psy7344 10 ETEPHCDGIDINI--GCP-----QMVA--KRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINI 80 (240)
Q Consensus 10 ~~~~~~d~id~N~--gcP-----~~kv--~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~dl~~ 80 (240)
..+.|+|.|+||+ ||. ++++ +...||+.|.+...++.+|+.++. +....+++++.+. +.
T Consensus 150 a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir-~~vg~~~~v~iRl-----------~~ 217 (343)
T cd04734 150 CQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVR-AAVGPDFIVGIRI-----------SG 217 (343)
T ss_pred HHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHH-HHcCCCCeEEEEe-----------eh
Confidence 3457899999999 754 4444 446789999999999999999998 3444444443221 00
Q ss_pred chhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-C-CCEEEecCCCchhhh-hcc
Q psy7344 81 GCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-H-CDGIDINIGCPQMVA-KRG 157 (240)
Q Consensus 81 gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~-~d~Idin~gCP~~~~-~~~ 157 (240)
.+.+ + .|.+.++..++++.+++ + +|.|++..|...... .+.
T Consensus 218 -------------------~~~~------------~-----~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~ 261 (343)
T cd04734 218 -------------------DEDT------------E-----GGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAH 261 (343)
T ss_pred -------------------hhcc------------C-----CCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCccccccc
Confidence 0000 0 12355666788888876 6 799999766321100 000
Q ss_pred cccccc---cCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 158 HYGAYL---QDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 158 g~G~~l---~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
...... ..+++.++.+. +. +++||.+-.++.+..+..+.+++ ++|.|.+ ||.-
T Consensus 262 ~~~~~~~~~~~~~~~~~~ik----~~-----------~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~-gR~~ 318 (343)
T cd04734 262 VVPSMGMPPGPFLPLAARIK----QA-----------VDLPVFHAGRIRDPAEAEQALAAGHADMVGM-TRAH 318 (343)
T ss_pred ccCCCCCCcchhHHHHHHHH----HH-----------cCCCEEeeCCCCCHHHHHHHHHcCCCCeeee-cHHh
Confidence 011100 12345444444 44 56788888888777888888888 8999999 8864
No 70
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=98.10 E-value=1.6e-05 Score=68.76 Aligned_cols=109 Identities=6% Similarity=-0.067 Sum_probs=74.7
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
+.++|+++...+ ..|+ |++ +.+.+.+++.+.+..|++-+ ..|++++.||+.+.++++...
T Consensus 63 n~~~i~~i~~~~---~~pv--~vg-GGirs~edv~~~l~~Ga~kv--------------viGs~~l~~p~l~~~i~~~~~ 122 (241)
T PRK14024 63 NRELLAEVVGKL---DVKV--ELS-GGIRDDESLEAALATGCARV--------------NIGTAALENPEWCARVIAEHG 122 (241)
T ss_pred cHHHHHHHHHHc---CCCE--EEc-CCCCCHHHHHHHHHCCCCEE--------------EECchHhCCHHHHHHHHHHhh
Confidence 357777776543 2454 443 44555666667776665433 356678999999999998875
Q ss_pred hccccccCCCCCCCCeee---EEeee-h----hcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 179 MVHFVIAEPHCDGNDINI---GCPQM-V----AKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 179 ~~~~~i~~~~~~~~~~pv---svK~r-~----~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
+.+ + ..+++ .+|++ + .+..++++.+++ |++.|++|+|++.+.+ +|+ ||+
T Consensus 123 ~~i--~-------vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~--~G~-d~~ 180 (241)
T PRK14024 123 DRV--A-------VGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTL--TGP-NLE 180 (241)
T ss_pred hhE--E-------EEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCc--cCC-CHH
Confidence 541 1 23344 45544 2 246899999999 9999999999999985 676 886
No 71
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=98.09 E-value=6e-06 Score=74.58 Aligned_cols=143 Identities=9% Similarity=-0.013 Sum_probs=82.8
Q ss_pred cccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCcccc--ccCchhhhhh
Q psy7344 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGID--INIGCPQMVA 87 (240)
Q Consensus 10 ~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~d--l~~gC~~~i~ 87 (240)
..+.++|.|+||++||... .+..|+.+ ++.+.+++.++. +..+.|+++|-...+....+..+ ...| ...++
T Consensus 121 ~~~~gad~iElN~s~~~~~--~~~~g~~~---~~~~~eiv~~v~-~~~~iPv~vKl~p~~~~~~~~a~~l~~~G-adgi~ 193 (325)
T cd04739 121 IEEAGADALELNIYALPTD--PDISGAEV---EQRYLDILRAVK-SAVTIPVAVKLSPFFSALAHMAKQLDAAG-ADGLV 193 (325)
T ss_pred HHhcCCCEEEEeCCCCCCC--CCcccchH---HHHHHHHHHHHH-hccCCCEEEEcCCCccCHHHHHHHHHHcC-CCeEE
Confidence 3455799999999996422 23344333 467889999998 46689999983211110000100 1233 23344
Q ss_pred hhcccce-ee-------------e------CChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecC
Q psy7344 88 KRGHYGA-YL-------------Q------DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINI 147 (240)
Q Consensus 88 ~~g~~ga-~l-------------~------~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~ 147 (240)
.++++.. .. . ..+++++++...+ +.|++.. +++.+..++.+++..|+++|++..
T Consensus 194 ~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~---~ipIig~---GGI~s~~Da~e~l~aGA~~Vqv~t 267 (325)
T cd04739 194 LFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV---KASLAAS---GGVHDAEDVVKYLLAGADVVMTTS 267 (325)
T ss_pred EEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc---CCCEEEE---CCCCCHHHHHHHHHcCCCeeEEeh
Confidence 4433211 00 0 0022333333222 3676654 888888999999988999999965
Q ss_pred CCchhhhhcccccccccC-CHHHHHHHHHHhhh
Q psy7344 148 GCPQMVAKRGHYGAYLQD-DWPLLTNLVYSPNM 179 (240)
Q Consensus 148 gCP~~~~~~~g~G~~l~~-~p~~i~~iv~~~~~ 179 (240)
+ ++. .|+.+.+|.+.+.+
T Consensus 268 a--------------~~~~gp~~~~~i~~~L~~ 286 (325)
T cd04739 268 A--------------LLRHGPDYIGTLLAGLEA 286 (325)
T ss_pred h--------------hhhcCchHHHHHHHHHHH
Confidence 5 333 57788887777655
No 72
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=98.08 E-value=1.2e-05 Score=73.42 Aligned_cols=86 Identities=16% Similarity=0.241 Sum_probs=64.5
Q ss_pred HHHHHHHHHHc-cCCCEEEecCC---------CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAE-PHCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le-~~~d~Idin~g---------CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+.+.++|+.+. .|+|+|+|..+ ||..-.....||.++...+..+.++++++++.+ +.+++|
T Consensus 137 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~v---------G~d~~v 207 (353)
T cd02930 137 EDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAV---------GEDFII 207 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHc---------CCCceE
Confidence 45667777764 48999999543 776433445577778888999999999999982 235666
Q ss_pred EEeeeh----------hcHHHHHHHHhC-CCCeEEE
Q psy7344 197 GCPQMV----------AKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 197 svK~r~----------~~~~~~~~~l~~-G~~~iti 221 (240)
.+|+.. +++.++++.|++ |+|+|++
T Consensus 208 ~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~v 243 (353)
T cd02930 208 IYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNT 243 (353)
T ss_pred EEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 666652 246789999999 9999999
No 73
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=98.06 E-value=1.6e-06 Score=78.76 Aligned_cols=149 Identities=14% Similarity=0.104 Sum_probs=95.9
Q ss_pred cccCCCCeecccCC---------CchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccc--cccC-C--Ccc
Q psy7344 10 ETEPHCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLF--IAEP-H--CDG 75 (240)
Q Consensus 10 ~~~~~~d~id~N~g---------cP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~--~lap-~--~~~ 75 (240)
..+.|+|.|+||+| ||...-+...||..|.+...++.+|+.++. +..+.|+.++... ...+ + .+.
T Consensus 151 a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir-~~~~~~v~vRis~~d~~~~G~~~~e~ 229 (337)
T PRK13523 151 AKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVK-EVWDGPLFVRISASDYHPGGLTVQDY 229 (337)
T ss_pred HHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHH-HhcCCCeEEEecccccCCCCCCHHHH
Confidence 44568999999999 897766555677779999999999999999 4556677776321 1111 0 011
Q ss_pred ccc-----cCchhhhhhhhcccce----e-e-eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccC-CCEE
Q psy7344 76 IDI-----NIGCPQMVAKRGHYGA----Y-L-QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDGI 143 (240)
Q Consensus 76 ~dl-----~~gC~~~i~~~g~~ga----~-l-~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~-~d~I 143 (240)
.++ ..| ...+.+++++-. . . ..++++.+.++..+ ..||++. ++..+...+.+.++++ +|.|
T Consensus 230 ~~i~~~l~~~g-vD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~---~ipVi~~---G~i~~~~~a~~~l~~g~~D~V 302 (337)
T PRK13523 230 VQYAKWMKEQG-VDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHA---NIATGAV---GLITSGAQAEEILQNNRADLI 302 (337)
T ss_pred HHHHHHHHHcC-CCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhc---CCcEEEe---CCCCCHHHHHHHHHcCCCChH
Confidence 111 223 233444443210 0 1 11356666665443 3677665 6666666777888875 8999
Q ss_pred EecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 144 DINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 144 din~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
.++++ ++.||+++.++.+.+...
T Consensus 303 ~~gR~--------------~iadP~~~~k~~~~~~~~ 325 (337)
T PRK13523 303 FIGRE--------------LLRNPYFPRIAAKELGFE 325 (337)
T ss_pred HhhHH--------------HHhCccHHHHHHHHcCCC
Confidence 88776 789999999998877665
No 74
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.00 E-value=4e-05 Score=67.04 Aligned_cols=106 Identities=11% Similarity=0.012 Sum_probs=77.4
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
+.++++++.... ..|+ + .++++.++.++.+++..|++.|.+|.. ++.+|+.+.++.+...
T Consensus 62 n~~~i~~i~~~~---~~pv--~-~gGGi~s~~d~~~l~~~G~~~vvigs~--------------~~~~~~~~~~~~~~~~ 121 (258)
T PRK01033 62 NYELIENLASEC---FMPL--C-YGGGIKTLEQAKKIFSLGVEKVSINTA--------------ALEDPDLITEAAERFG 121 (258)
T ss_pred cHHHHHHHHHhC---CCCE--E-ECCCCCCHHHHHHHHHCCCCEEEEChH--------------HhcCHHHHHHHHHHhC
Confidence 467777776542 3564 3 346777777888888778999999843 5789999999998764
Q ss_pred hccccccCCCCCCCCeeeEEeeeh------------------hcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 179 MVHFVIAEPHCDGNDINIGCPQMV------------------AKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 179 ~~~~~i~~~~~~~~~~pvsvK~r~------------------~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
.. .++++++.|. .+..++++.+++ |++.+.+|+|++.+.+ +|. ||+
T Consensus 122 ~~------------~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~--~G~-d~~ 186 (258)
T PRK01033 122 SQ------------SVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTM--KGY-DLE 186 (258)
T ss_pred CC------------cEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCc--CCC-CHH
Confidence 22 3566666541 136799999999 9999999999999885 564 875
No 75
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.99 E-value=1.3e-05 Score=73.54 Aligned_cols=127 Identities=11% Similarity=0.011 Sum_probs=82.1
Q ss_pred ecccccccCCCccccccCchhhhhhhhcccceee-eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCC
Q psy7344 63 MGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYL-QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCD 141 (240)
Q Consensus 63 vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l-~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d 141 (240)
++...+.+||...++..+. ..++..|+.|..- ..-| +......|+..||.+.++ .++++.+++..
T Consensus 46 i~~Piv~a~M~gVt~~~la--~avs~~GglGvl~~~gl~--------~~~~~~e~l~~qi~~~~~---~~~~~~~~~~~- 111 (368)
T PRK08649 46 FEIPIIASPMDAVVSPETA--IELGKLGGLGVLNLEGLW--------TRYEDPEPILDEIASLGK---DEATRLMQELY- 111 (368)
T ss_pred ccCcEeccCCcccCCHHHH--HHHHhCCCceEEeecccc--------ccCCCHHHHHHHHHhcCc---HHHHHHHHHhh-
Confidence 4456678999999998886 7777776544422 1111 000011234445544444 23444443310
Q ss_pred EEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh--hcHHHHHHHHhC-CCCe
Q psy7344 142 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV--AKRGHYGAYLQD-DWPL 218 (240)
Q Consensus 142 ~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~--~~~~~~~~~l~~-G~~~ 218 (240)
. .+.+|+++.+++++++++ .|++|+|+ .++.++++.+++ |+|.
T Consensus 112 ------~--------------~P~~p~l~~~iv~~~~~~--------------~V~v~vr~~~~~~~e~a~~l~eaGvd~ 157 (368)
T PRK08649 112 ------A--------------EPIKPELITERIAEIRDA--------------GVIVAVSLSPQRAQELAPTVVEAGVDL 157 (368)
T ss_pred ------c--------------CCCCHHHHHHHHHHHHhC--------------eEEEEEecCCcCHHHHHHHHHHCCCCE
Confidence 0 136899999999999886 25667765 468999999999 9999
Q ss_pred EEEecccccccCCCCCCC-CCC
Q psy7344 219 LTELGKMAMLVGILDNTG-SWT 239 (240)
Q Consensus 219 itih~R~~~~~~~~~~~a-dw~ 239 (240)
|++|+||+.|.| .+.+ ||.
T Consensus 158 I~vhgrt~~~~h--~~~~~~~~ 177 (368)
T PRK08649 158 FVIQGTVVSAEH--VSKEGEPL 177 (368)
T ss_pred EEEeccchhhhc--cCCcCCHH
Confidence 999999999986 3444 674
No 76
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.96 E-value=4.9e-05 Score=68.92 Aligned_cols=153 Identities=15% Similarity=0.132 Sum_probs=95.0
Q ss_pred cccCCCCeecccCCC---------chhhhhccCCCcccCCCchhHHHHHHHhhcccCC--CceeecccccccCCCccccc
Q psy7344 10 ETEPHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKN--GPLFMGPLFIAEPHCDGIDI 78 (240)
Q Consensus 10 ~~~~~~d~id~N~gc---------P~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~--~p~~vk~~~~lap~~~~~dl 78 (240)
..+.|+|.|+||+|| |.-..+...||..|.+.+.++.+++.++. ++.. .|+.++ +
T Consensus 158 a~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR-~avG~d~~v~vr-------------i 223 (338)
T cd04733 158 AQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIR-AAVGPGFPVGIK-------------L 223 (338)
T ss_pred HHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHH-HHcCCCCeEEEE-------------E
Confidence 455689999999998 66544445678789999999999999998 3432 233332 1
Q ss_pred cCchhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcc
Q psy7344 79 NIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRG 157 (240)
Q Consensus 79 ~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~ 157 (240)
+.- +.. + .|.+.++..++++.+++ ++|.|++..|.........
T Consensus 224 s~~-------------------~~~------------~-----~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~ 267 (338)
T cd04733 224 NSA-------------------DFQ------------R-----GGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAG 267 (338)
T ss_pred cHH-------------------HcC------------C-----CCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccc
Confidence 100 000 0 11345566778888876 7899998877432111000
Q ss_pred -cccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 158 -HYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 158 -g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.... ....+-...++.+.+++. +++||.+-.++.+..++.+.+++ ++|.|.+ ||-
T Consensus 268 ~~~~~-~~~~~~~~~~~~~~ik~~-----------v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~l-gR~ 324 (338)
T cd04733 268 AKKES-TIAREAYFLEFAEKIRKV-----------TKTPLMVTGGFRTRAAMEQALASGAVDGIGL-ARP 324 (338)
T ss_pred cccCC-ccccchhhHHHHHHHHHH-----------cCCCEEEeCCCCCHHHHHHHHHcCCCCeeee-ChH
Confidence 0000 000111112344445555 67899998888888889999999 8999998 774
No 77
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.96 E-value=2.5e-05 Score=71.52 Aligned_cols=89 Identities=18% Similarity=0.110 Sum_probs=68.4
Q ss_pred HHHHHHHHHHcc-CCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|+.+.+ |+|+|+|+.+| |........||..+......+.+|++++++.+ +.++||
T Consensus 144 ~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~v---------G~d~~v 214 (361)
T cd04747 144 AAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAV---------GPDFPI 214 (361)
T ss_pred HHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHc---------CCCCeE
Confidence 456677777755 89999999999 76544556688888888899999999999973 246899
Q ss_pred EEeeeh--------------hcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 197 GCPQMV--------------AKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 197 svK~r~--------------~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
.+|+.. ++..++++.|++ |+|.|. .++.
T Consensus 215 ~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~--vs~g 257 (361)
T cd04747 215 ILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFH--CSTR 257 (361)
T ss_pred EEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEE--ecCC
Confidence 999982 123567788999 999954 4553
No 78
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.96 E-value=4.2e-05 Score=65.97 Aligned_cols=99 Identities=8% Similarity=0.019 Sum_probs=72.2
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
++++++++...+ ..|+++. +.+.+..++.+.++.|+++|.+|.+ ++.+|+.+.++++.+.
T Consensus 59 ~~~~i~~i~~~~---~~pv~~~---GGI~s~~d~~~~l~~G~~~v~ig~~--------------~~~~p~~~~~i~~~~~ 118 (243)
T cd04731 59 MLDVVERVAEEV---FIPLTVG---GGIRSLEDARRLLRAGADKVSINSA--------------AVENPELIREIAKRFG 118 (243)
T ss_pred cHHHHHHHHHhC---CCCEEEe---CCCCCHHHHHHHHHcCCceEEECch--------------hhhChHHHHHHHHHcC
Confidence 577888876554 3676644 6777777777777778999999866 4679999999998764
Q ss_pred h-ccccccCCCCCCCCeeeEEe----------ee------hhcHHHHHHHHhC-CCCeEEEecccccc
Q psy7344 179 M-VHFVIAEPHCDGNDINIGCP----------QM------VAKRGHYGAYLQD-DWPLLTELGKMAML 228 (240)
Q Consensus 179 ~-~~~~i~~~~~~~~~~pvsvK----------~r------~~~~~~~~~~l~~-G~~~itih~R~~~~ 228 (240)
. . .-+++.+| +| ..++.++++.+++ |+++|.+|+|++..
T Consensus 119 ~~~-----------i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g 175 (243)
T cd04731 119 SQC-----------VVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDG 175 (243)
T ss_pred CCC-----------EEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 2 2 22344444 33 1357889999999 99999999999754
No 79
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=97.96 E-value=1.9e-05 Score=72.80 Aligned_cols=152 Identities=19% Similarity=0.274 Sum_probs=91.2
Q ss_pred cccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccc-----------cccCCCccc
Q psy7344 8 RIETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLF-----------IAEPHCDGI 76 (240)
Q Consensus 8 ~~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~-----------~lap~~~~~ 76 (240)
+.+.+.++|.|.||+.||.....++ .|+.+.++|+.+.+++.++. +..+.|+++|-.- .....++++
T Consensus 134 ~~~e~~GaD~iELNiSCPn~~~~r~-~g~~~gq~~e~~~~i~~~Vk-~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi 211 (385)
T PLN02495 134 ERVEETGVDALEINFSCPHGMPERK-MGAAVGQDCDLLEEVCGWIN-AKATVPVWAKMTPNITDITQPARVALKSGCEGV 211 (385)
T ss_pred HHHHhcCCCEEEEECCCCCCCCcCc-cchhhccCHHHHHHHHHHHH-HhhcCceEEEeCCChhhHHHHHHHHHHhCCCEE
Confidence 3455667999999999999766664 68889999999999999998 4668999988310 011111111
Q ss_pred ------------cccCchhhhhhh--hcccceee-eC-Ch---hhHHHhhhcccC---CCCceeEEeecCCHHHHHHHHH
Q psy7344 77 ------------DINIGCPQMVAK--RGHYGAYL-QD-DW---PLLTELGFKTRS---HMCGHSLMFCGNDSKNLTEAAK 134 (240)
Q Consensus 77 ------------dl~~gC~~~i~~--~g~~ga~l-~~-d~---eli~~i~~~~~~---~~~pvivqi~g~d~~~~~~aa~ 134 (240)
|+..+-|.. .. .+++|.+. .. .| .++.++...+.. ...|++.. +.+.+..++++
T Consensus 212 ~liNT~~~~~~ID~~t~~p~~-~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGv---GGI~s~~Da~e 287 (385)
T PLN02495 212 AAINTIMSVMGINLDTLRPEP-CVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGI---GGVETGGDAAE 287 (385)
T ss_pred EEecccCcccccccccCcccc-ccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEE---CCCCCHHHHHH
Confidence 111110100 00 01122211 00 01 222233333221 12454433 78888999999
Q ss_pred HHccCCCEEEecCCCchhhhhcccccccccCC-HHHHHHHHHHhhh
Q psy7344 135 LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD-WPLLTNLVYSPNM 179 (240)
Q Consensus 135 ~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~-p~~i~~iv~~~~~ 179 (240)
++..|++.|.+.-+ ++.+ |..+.+|.+.+.+
T Consensus 288 ~i~aGAs~VQv~Ta--------------~~~~Gp~vi~~i~~~L~~ 319 (385)
T PLN02495 288 FILLGADTVQVCTG--------------VMMHGYPLVKNLCAELQD 319 (385)
T ss_pred HHHhCCCceeEeee--------------eeecCcHHHHHHHHHHHH
Confidence 99999999988444 5566 8888888877765
No 80
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.92 E-value=1.2e-05 Score=72.85 Aligned_cols=143 Identities=9% Similarity=-0.023 Sum_probs=82.4
Q ss_pred cccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCcccc--ccCchhhhhh
Q psy7344 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGID--INIGCPQMVA 87 (240)
Q Consensus 10 ~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~d--l~~gC~~~i~ 87 (240)
+.+.++|.|+||++||..+.. ..|.. .++.+.+++.++. +..+.|+++|-........+... ...| ...++
T Consensus 123 ~~~agad~ielN~scpp~~~~--~~g~~---~~~~~~eil~~v~-~~~~iPV~vKl~p~~~~~~~~a~~l~~~G-~dgI~ 195 (334)
T PRK07565 123 IEQAGADALELNIYYLPTDPD--ISGAE---VEQRYLDILRAVK-SAVSIPVAVKLSPYFSNLANMAKRLDAAG-ADGLV 195 (334)
T ss_pred HHHcCCCEEEEeCCCCCCCCC--Ccccc---HHHHHHHHHHHHH-hccCCcEEEEeCCCchhHHHHHHHHHHcC-CCeEE
Confidence 345579999999999765432 22322 2456788889998 46689999983211100000000 1233 23333
Q ss_pred hhcccceeeeCC---------------------hhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEec
Q psy7344 88 KRGHYGAYLQDD---------------------WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDIN 146 (240)
Q Consensus 88 ~~g~~ga~l~~d---------------------~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin 146 (240)
.++++.. ...| ++.+..+...+ ..|++.. +++.+..++.+++..|+++|++.
T Consensus 196 ~~n~~~~-~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~---~ipIig~---GGI~s~~Da~e~l~aGA~~V~v~ 268 (334)
T PRK07565 196 LFNRFYQ-PDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV---GADLAAT---TGVHDAEDVIKMLLAGADVVMIA 268 (334)
T ss_pred EECCcCC-CCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc---CCCEEEE---CCCCCHHHHHHHHHcCCCceeee
Confidence 3333211 0001 22333332222 3676654 88889999999998899999996
Q ss_pred CCCchhhhhcccccccccC-CHHHHHHHHHHhhhc
Q psy7344 147 IGCPQMVAKRGHYGAYLQD-DWPLLTNLVYSPNMV 180 (240)
Q Consensus 147 ~gCP~~~~~~~g~G~~l~~-~p~~i~~iv~~~~~~ 180 (240)
.+ ++. .|+.+.+|.+.+++.
T Consensus 269 t~--------------~~~~g~~~~~~i~~~L~~~ 289 (334)
T PRK07565 269 SA--------------LLRHGPDYIGTILRGLEDW 289 (334)
T ss_pred hH--------------HhhhCcHHHHHHHHHHHHH
Confidence 55 333 477888887777664
No 81
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.86 E-value=0.00011 Score=62.79 Aligned_cols=106 Identities=8% Similarity=0.002 Sum_probs=74.7
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
++++++++...+ ..|+.+. +.+.+..++.++++.|+|.|.++.. ++.||+.+.++.+...
T Consensus 61 ~~~~i~~i~~~~---~~pv~~~---GgI~~~e~~~~~~~~Gad~vvigs~--------------~l~dp~~~~~i~~~~g 120 (234)
T cd04732 61 NLELIEEIVKAV---GIPVQVG---GGIRSLEDIERLLDLGVSRVIIGTA--------------AVKNPELVKELLKEYG 120 (234)
T ss_pred CHHHHHHHHHhc---CCCEEEe---CCcCCHHHHHHHHHcCCCEEEECch--------------HHhChHHHHHHHHHcC
Confidence 577888876543 3565443 5566777777778789999977665 4679999999998754
Q ss_pred hccccccCCCCCCCCeeeEEeee-------------hhcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 179 MVHFVIAEPHCDGNDINIGCPQM-------------VAKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 179 ~~~~~i~~~~~~~~~~pvsvK~r-------------~~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
.. .+.++++.+ ..+..++++.+++ |++.+++|.+++.+.+ .+ .||+
T Consensus 121 ~~------------~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~--~g-~~~~ 180 (234)
T cd04732 121 GE------------RIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTL--SG-PNFE 180 (234)
T ss_pred Cc------------eEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCcc--CC-CCHH
Confidence 31 223333322 1256889999999 9999999999988764 45 7774
No 82
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=97.85 E-value=2.7e-05 Score=71.52 Aligned_cols=142 Identities=13% Similarity=0.061 Sum_probs=86.4
Q ss_pred cccCCCCeecccCCC---------ch-hhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCC-------
Q psy7344 10 ETEPHCDGIDINIGC---------PQ-MVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPH------- 72 (240)
Q Consensus 10 ~~~~~~d~id~N~gc---------P~-~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~------- 72 (240)
..+.|+|.|+||+|| |. ++.+. .||+.|.+...++.+|+.++. +....++.|..+.-....
T Consensus 159 a~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD-~yGGslenR~Rf~~eii~aIr-~~vg~~~~v~vRls~~~~~~~~g~~ 236 (370)
T cd02929 159 ARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTD-EYGGSLENRARFWRETLEDTK-DAVGDDCAVATRFSVDELIGPGGIE 236 (370)
T ss_pred HHHcCCCEEEEcccccchHHHhhCccccCCcc-ccCCChHhhhHHHHHHHHHHH-HHcCCCceEEEEecHHHhcCCCCCC
Confidence 445689999999999 77 55555 699999999999999999999 455444444322111110
Q ss_pred ---------------CccccccCchhhhhhhhcccceee--eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHH
Q psy7344 73 ---------------CDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKL 135 (240)
Q Consensus 73 ---------------~~~~dl~~gC~~~i~~~g~~ga~l--~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~ 135 (240)
.|++++..|- ...++....+. ...+++...++..+ +.|++.. ++..+...+.++
T Consensus 237 ~~~e~~~~~~~l~~~~D~i~vs~g~---~~~~~~~~~~~~~~~~~~~~~~ik~~~---~~pvi~~---G~i~~~~~~~~~ 307 (370)
T cd02929 237 SEGEGVEFVEMLDELPDLWDVNVGD---WANDGEDSRFYPEGHQEPYIKFVKQVT---SKPVVGV---GRFTSPDKMVEV 307 (370)
T ss_pred CHHHHHHHHHHHHhhCCEEEecCCC---ccccccccccCCccccHHHHHHHHHHC---CCCEEEe---CCCCCHHHHHHH
Confidence 1111111110 00000000011 11244545554433 4687665 666666778888
Q ss_pred HccC-CCEEEecCCCchhhhhcccccccccCCHHHHHHHHHH
Q psy7344 136 AEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176 (240)
Q Consensus 136 le~~-~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~ 176 (240)
++++ +|.|.++++ ++.||+++.++.+-
T Consensus 308 l~~g~~D~V~~gR~--------------~ladP~l~~k~~~g 335 (370)
T cd02929 308 VKSGILDLIGAARP--------------SIADPFLPKKIREG 335 (370)
T ss_pred HHcCCCCeeeechH--------------hhhCchHHHHHHcC
Confidence 8875 899999877 78999998888764
No 83
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.76 E-value=0.0002 Score=61.36 Aligned_cols=99 Identities=11% Similarity=0.039 Sum_probs=72.1
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
+.++++++...+ ..|+.+ ++++.++.++.+.++.|++.|.+|.. ++.+|+.++++++...
T Consensus 62 n~~~~~~i~~~~---~~pv~~---~ggi~~~~d~~~~~~~G~~~vilg~~--------------~l~~~~~~~~~~~~~~ 121 (232)
T TIGR03572 62 LFELISNLAEEC---FMPLTV---GGGIRSLEDAKKLLSLGADKVSINTA--------------ALENPDLIEEAARRFG 121 (232)
T ss_pred CHHHHHHHHHhC---CCCEEE---ECCCCCHHHHHHHHHcCCCEEEEChh--------------HhcCHHHHHHHHHHcC
Confidence 466777776543 356543 47777777887877778999998744 6789999999997653
Q ss_pred hccccccCCCCCCCCeeeEEeeeh-------------------hcHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 179 MVHFVIAEPHCDGNDINIGCPQMV-------------------AKRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 179 ~~~~~i~~~~~~~~~~pvsvK~r~-------------------~~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
. ..++++++.+. .+..++++.+++ |++.|++|++++.+.
T Consensus 122 ~------------~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~ 180 (232)
T TIGR03572 122 S------------QCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGT 180 (232)
T ss_pred C------------ceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence 2 22556655432 236899999999 999999999988765
No 84
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=97.71 E-value=9.8e-05 Score=66.09 Aligned_cols=147 Identities=18% Similarity=0.181 Sum_probs=90.2
Q ss_pred cccCC-CCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeeccc----------c-c-ccCCCccc
Q psy7344 10 ETEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPL----------F-I-AEPHCDGI 76 (240)
Q Consensus 10 ~~~~~-~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~----------~-~-lap~~~~~ 76 (240)
+.+.+ +|.|-+|..||. +++ |..|.++|+.+..++.+++ +..+.|+++|-. . . .++..+.+
T Consensus 118 ~~~~~~ad~ielNiScPn---t~g--~~~l~~~~e~l~~l~~~vk-~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~ 191 (310)
T COG0167 118 LEEAGDADAIELNISCPN---TPG--GRALGQDPELLEKLLEAVK-AATKVPVFVKLAPNITDIDEIAKAAEEAGADGLI 191 (310)
T ss_pred HHhcCCCCEEEEEccCCC---CCC--hhhhccCHHHHHHHHHHHH-hcccCceEEEeCCCHHHHHHHHHHHHHcCCcEEE
Confidence 33445 799999999999 343 7778889999999999999 477899999721 0 0 01222222
Q ss_pred cccCchhhh-h----------hhhccc-ceee-eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEE
Q psy7344 77 DINIGCPQM-V----------AKRGHY-GAYL-QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGI 143 (240)
Q Consensus 77 dl~~gC~~~-i----------~~~g~~-ga~l-~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~I 143 (240)
-+|.--... + ..+|++ |..+ .....+++++...+.. +.|+|- .+.+.++.++.+.+..|++.|
T Consensus 192 ~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~-~ipIIG---vGGI~s~~DA~E~i~aGA~~v 267 (310)
T COG0167 192 AINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGG-DIPIIG---VGGIETGEDALEFILAGASAV 267 (310)
T ss_pred EEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCC-CCcEEE---ecCcCcHHHHHHHHHcCCchh
Confidence 112100001 1 112221 1122 1113455555444332 466554 388999999999999988888
Q ss_pred EecCCCchhhhhcccccccccCC-HHHHHHHHHHhhhc
Q psy7344 144 DINIGCPQMVAKRGHYGAYLQDD-WPLLTNLVYSPNMV 180 (240)
Q Consensus 144 din~gCP~~~~~~~g~G~~l~~~-p~~i~~iv~~~~~~ 180 (240)
.+.-+ ++.+ |..+++|.+.+.+-
T Consensus 268 Qv~Ta--------------l~~~Gp~i~~~I~~~l~~~ 291 (310)
T COG0167 268 QVGTA--------------LIYKGPGIVKEIIKGLARW 291 (310)
T ss_pred eeeee--------------eeeeCchHHHHHHHHHHHH
Confidence 77444 6667 88888888876653
No 85
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.69 E-value=0.00019 Score=61.29 Aligned_cols=107 Identities=7% Similarity=-0.056 Sum_probs=73.5
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
+.++++++...+ ..|+.+ ++.+.+..++.+.++.|++.|-++ ++++.+|+.+.++.+...
T Consensus 62 ~~~~i~~i~~~~---~~pv~~---~GGI~~~ed~~~~~~~Ga~~vilg--------------~~~l~~~~~l~ei~~~~~ 121 (233)
T PRK00748 62 NLELIEAIVKAV---DIPVQV---GGGIRSLETVEALLDAGVSRVIIG--------------TAAVKNPELVKEACKKFP 121 (233)
T ss_pred cHHHHHHHHHHC---CCCEEE---cCCcCCHHHHHHHHHcCCCEEEEC--------------chHHhCHHHHHHHHHHhC
Confidence 466777765543 356554 356666667777777788877553 346789999999988764
Q ss_pred hccccccCCCCCCCCeeeEEeee------h-----hcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 179 MVHFVIAEPHCDGNDINIGCPQM------V-----AKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 179 ~~~~~i~~~~~~~~~~pvsvK~r------~-----~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
+. ..+++.+|.+ + .+..++++.+++ |++.|.+|.+++.+.+ +| .||+
T Consensus 122 ~~-----------i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~--~G-~d~~ 180 (233)
T PRK00748 122 GK-----------IVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTL--SG-PNVE 180 (233)
T ss_pred CC-----------ceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCc--CC-CCHH
Confidence 43 2234444321 1 246899999999 9999999999999885 56 7885
No 86
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.65 E-value=1.4e-05 Score=72.88 Aligned_cols=147 Identities=15% Similarity=0.137 Sum_probs=85.5
Q ss_pred cccCCCCeecccCC---------CchhhhhccCCCcccCCCchhHHHHHHHhhcccCC----CceeecccccccCC-Ccc
Q psy7344 10 ETEPHCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKN----GPLFMGPLFIAEPH-CDG 75 (240)
Q Consensus 10 ~~~~~~d~id~N~g---------cP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~----~p~~vk~~~~lap~-~~~ 75 (240)
..+-|+|.|+||+| ||..+.+...||..|.+...++.+|+.++. ++.. .+..|..+.-...+ .+.
T Consensus 153 a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr-~~vg~~~~~~~~v~~R~s~~~~~~~g 231 (353)
T cd04735 153 AIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQ-EVIDKHADKDFILGYRFSPEEPEEPG 231 (353)
T ss_pred HHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHH-HHhccccCCCceEEEEECcccccCCC
Confidence 44568999999986 898888766788779999999999999998 4543 33334322111111 111
Q ss_pred ccc-----------cCchhhhhhhhcccc-ee--e--eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccC
Q psy7344 76 IDI-----------NIGCPQMVAKRGHYG-AY--L--QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH 139 (240)
Q Consensus 76 ~dl-----------~~gC~~~i~~~g~~g-a~--l--~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~ 139 (240)
.+. ..| ...+.++++.. .. . ...++.+..+...+. ...||++. ++..+..++.++++.+
T Consensus 232 ~~~ee~~~i~~~L~~~G-vD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~-~~iPVi~~---Ggi~t~e~ae~~l~~g 306 (353)
T cd04735 232 IRMEDTLALVDKLADKG-LDYLHISLWDFDRKSRRGRDDNQTIMELVKERIA-GRLPLIAV---GSINTPDDALEALETG 306 (353)
T ss_pred CCHHHHHHHHHHHHHcC-CCEEEeccCccccccccCCcchHHHHHHHHHHhC-CCCCEEEE---CCCCCHHHHHHHHHcC
Confidence 111 222 12333332111 00 0 012344444433332 24677765 5555555666677667
Q ss_pred CCEEEecCCCchhhhhcccccccccCCHHHHHHHHHH
Q psy7344 140 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176 (240)
Q Consensus 140 ~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~ 176 (240)
+|.|.++++ ++.||+++.++.+.
T Consensus 307 aD~V~~gR~--------------liadPdl~~k~~~G 329 (353)
T cd04735 307 ADLVAIGRG--------------LLVDPDWVEKIKEG 329 (353)
T ss_pred CChHHHhHH--------------HHhCccHHHHHHcC
Confidence 888877655 77899988888654
No 87
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.64 E-value=0.00016 Score=62.64 Aligned_cols=85 Identities=9% Similarity=-0.069 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHH-----HHHHHhhhccccccCCCCCCCCeeeE-
Q psy7344 124 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT-----NLVYSPNMVHFVIAEPHCDGNDINIG- 197 (240)
Q Consensus 124 ~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~-----~iv~~~~~~~~~i~~~~~~~~~~pvs- 197 (240)
++.+++.++++.+++++|.||||.-||.+.+ .|..+....+.+. ++++.+++. +++|+.
T Consensus 15 p~~~~~~~~~~~l~~~ad~iElgip~sdp~a----dG~~i~~~~~~a~~~g~~~~v~~vr~~-----------~~~Pl~l 79 (244)
T PRK13125 15 PNVESFKEFIIGLVELVDILELGIPPKYPKY----DGPVIRKSHRKVKGLDIWPLLEEVRKD-----------VSVPIIL 79 (244)
T ss_pred CCHHHHHHHHHHHHhhCCEEEECCCCCCCCC----CCHHHHHHHHHHHHcCcHHHHHHHhcc-----------CCCCEEE
Confidence 4788999999999767999999999999853 2444555566655 688888765 677863
Q ss_pred -Eeee--hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 198 -CPQM--VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 198 -vK~r--~~~~~~~~~~l~~-G~~~itih~ 223 (240)
+|.. ..+..++++.+.+ |++++++|.
T Consensus 80 M~y~n~~~~~~~~~i~~~~~~Gadgvii~d 109 (244)
T PRK13125 80 MTYLEDYVDSLDNFLNMARDVGADGVLFPD 109 (244)
T ss_pred EEecchhhhCHHHHHHHHHHcCCCEEEECC
Confidence 4444 4567889999999 999999995
No 88
>KOG1799|consensus
Probab=97.62 E-value=3.6e-05 Score=69.05 Aligned_cols=98 Identities=12% Similarity=0.095 Sum_probs=79.3
Q ss_pred CCceeEEee----cCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCC
Q psy7344 114 MCGHSLMFC----GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPH 188 (240)
Q Consensus 114 ~~pvivqi~----g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~ 188 (240)
+.|+.+-|. -.+...+.+++..-++ +.|..++|+.||+..-. .|+|.++.++|....++..++++.
T Consensus 201 ~~p~~imIas~Mciynk~~w~el~d~~eqag~d~lE~nlscphgm~e-rgmgla~gq~p~v~~EvC~Wi~A~-------- 271 (471)
T KOG1799|consen 201 VEPVVIMIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPHGMCE-RGMGLALGQCPIVDCEVCGWINAK-------- 271 (471)
T ss_pred cCCceeeehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCCCCcc-ccccceeccChhhhHHHhhhhhhc--------
Confidence 346555443 2566777788877776 79999999999998544 468999999999999999999998
Q ss_pred CCCCCeeeEEeee--hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 189 CDGNDINIGCPQM--VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 189 ~~~~~~pvsvK~r--~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..+|+..|+. +.+..+.++.... |+.+|+-..
T Consensus 272 ---~~Ip~~~kmTPNitd~revar~~~~~g~~GiaA~N 306 (471)
T KOG1799|consen 272 ---ATIPMVSKMTPNITDKREVARSVNPVGCEGIAAIN 306 (471)
T ss_pred ---cccccccccCCCcccccccchhcCcccccchhhHh
Confidence 7899999999 7788889999888 888876533
No 89
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=97.62 E-value=6e-05 Score=68.49 Aligned_cols=142 Identities=11% Similarity=-0.022 Sum_probs=87.4
Q ss_pred cccCCCCeecccCCC---------c-hhhhhccCCCcccCCCchhHHHHHHHhhcccC-CCceeeccc--ccccCCC---
Q psy7344 10 ETEPHCDGIDINIGC---------P-QMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK-NGPLFMGPL--FIAEPHC--- 73 (240)
Q Consensus 10 ~~~~~~d~id~N~gc---------P-~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~-~~p~~vk~~--~~lap~~--- 73 (240)
..+-|+|.|+||+|| | +++.+.. ||..|.+...++.+++.++. +.. ..|+.++.. .......
T Consensus 161 a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~-yGGslenR~rf~~eii~air-~~vg~d~v~vRis~~~~~~~~~~~~ 238 (338)
T cd02933 161 AIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDE-YGGSIENRARFLLEVVDAVA-EAIGADRVGIRLSPFGTFNDMGDSD 238 (338)
T ss_pred HHHcCCCEEEEccccchhHHHhcCCccCCCCCc-CCCcHHHhhhHHHHHHHHHH-HHhCCCceEEEECccccCCCCCCCC
Confidence 445689999999999 7 6677766 55559999999999999998 344 236666531 1111000
Q ss_pred ---ccccc-----cCchhhhhhh-hcccceee-eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccC-CCE
Q psy7344 74 ---DGIDI-----NIGCPQMVAK-RGHYGAYL-QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPH-CDG 142 (240)
Q Consensus 74 ---~~~dl-----~~gC~~~i~~-~g~~ga~l-~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~-~d~ 142 (240)
+.+++ ..| ...+.+ +|++.... ..++++...++..+ ..||++. ++.. ...+.+.++++ +|.
T Consensus 239 ~~ee~~~~~~~l~~~g-~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~---~ipvi~~---G~i~-~~~a~~~l~~g~~D~ 310 (338)
T cd02933 239 PEATFSYLAKELNKRG-LAYLHLVEPRVAGNPEDQPPDFLDFLRKAF---KGPLIAA---GGYD-AESAEAALADGKADL 310 (338)
T ss_pred CHHHHHHHHHHHHHcC-CcEEEEecCCCCCcccccchHHHHHHHHHc---CCCEEEE---CCCC-HHHHHHHHHcCCCCE
Confidence 00111 122 122332 33222211 12456666665544 4787765 5554 56677788774 999
Q ss_pred EEecCCCchhhhhcccccccccCCHHHHHHHHH
Q psy7344 143 IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175 (240)
Q Consensus 143 Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~ 175 (240)
|.++++ ++.||+++.++.+
T Consensus 311 V~~gR~--------------~ladP~~~~k~~~ 329 (338)
T cd02933 311 VAFGRP--------------FIANPDLVERLKN 329 (338)
T ss_pred EEeCHh--------------hhhCcCHHHHHhc
Confidence 999777 6899999888764
No 90
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.62 E-value=7.8e-05 Score=66.99 Aligned_cols=144 Identities=15% Similarity=0.119 Sum_probs=86.5
Q ss_pred ccccCCCCeecccCC---------CchhhhhccCCCcccCCCchhHHHHHHHhhcccC--CCceeecccc--cccCCC--
Q psy7344 9 IETEPHCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK--NGPLFMGPLF--IAEPHC-- 73 (240)
Q Consensus 9 ~~~~~~~d~id~N~g---------cP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~--~~p~~vk~~~--~lap~~-- 73 (240)
...+.|+|.|+||+| ||.-..+...||+.|.+...++.+++.++. +.. +.|+.++... ......
T Consensus 149 ~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr-~~~g~d~~i~vris~~~~~~~g~~~ 227 (327)
T cd02803 149 RAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVR-EAVGPDFPVGVRLSADDFVPGGLTL 227 (327)
T ss_pred HHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHH-HHcCCCceEEEEechhccCCCCCCH
Confidence 345678999999999 676555555688889999999999999998 344 4577665321 000000
Q ss_pred -ccccc-----cCchhhhhhhhccccee--e---------eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHH
Q psy7344 74 -DGIDI-----NIGCPQMVAKRGHYGAY--L---------QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA 136 (240)
Q Consensus 74 -~~~dl-----~~gC~~~i~~~g~~ga~--l---------~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~l 136 (240)
+..++ ..| ...+.+++++... . ..+++.++.+...+ ..|+++. ++..+..++.+++
T Consensus 228 ~e~~~la~~l~~~G-~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~---Ggi~t~~~a~~~l 300 (327)
T cd02803 228 EEAIEIAKALEEAG-VDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV---KIPVIAV---GGIRDPEVAEEIL 300 (327)
T ss_pred HHHHHHHHHHHHcC-CCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC---CCCEEEe---CCCCCHHHHHHHH
Confidence 00000 122 2223222221110 0 11234455554433 3676654 6666677788888
Q ss_pred cc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHH
Q psy7344 137 EP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174 (240)
Q Consensus 137 e~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv 174 (240)
+. ++|.|.++++ ++.||+++.++.
T Consensus 301 ~~g~aD~V~igR~--------------~ladP~l~~k~~ 325 (327)
T cd02803 301 AEGKADLVALGRA--------------LLADPDLPNKAR 325 (327)
T ss_pred HCCCCCeeeecHH--------------HHhCccHHHHHh
Confidence 87 6899988666 678999887765
No 91
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.61 E-value=0.00029 Score=70.52 Aligned_cols=147 Identities=16% Similarity=0.206 Sum_probs=97.8
Q ss_pred cccCCCCeecccCC---------CchhhhhccCCCcccCCCchhHHHHHHHhhcccC--CCceeecccccccCCCccccc
Q psy7344 10 ETEPHCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK--NGPLFMGPLFIAEPHCDGIDI 78 (240)
Q Consensus 10 ~~~~~~d~id~N~g---------cP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~--~~p~~vk~~~~lap~~~~~dl 78 (240)
..+.|+|.|+||+| ||..+.....||+.|.+...++.+|+.++. +.. +.|++++.
T Consensus 560 a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir-~~~~~~~~v~~ri------------- 625 (765)
T PRK08255 560 AAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVR-AVWPAEKPMSVRI------------- 625 (765)
T ss_pred HHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHH-HhcCCCCeeEEEE-------------
Confidence 34568999999999 999888777899999999999999999888 343 23444431
Q ss_pred cCchhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcc
Q psy7344 79 NIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRG 157 (240)
Q Consensus 79 ~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~ 157 (240)
+. .+|. + .|.+.++..++++.+++ |+|.|++..|...... +.
T Consensus 626 ~~-----------------~~~~--------------~-----~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~-~~ 668 (765)
T PRK08255 626 SA-----------------HDWV--------------E-----GGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDE-KP 668 (765)
T ss_pred cc-----------------cccc--------------C-----CCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCC-CC
Confidence 00 0000 0 12355667788888876 7999999877422110 11
Q ss_pred cccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 158 HYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 158 g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.++. ...-+ ..+.+++. +++||.+-.++.+..+..+.+++ ++|.|.+ ||-
T Consensus 669 ~~~~--~~~~~----~~~~ik~~-----------~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~-gR~ 719 (765)
T PRK08255 669 VYGR--MYQTP----FADRIRNE-----------AGIATIAVGAISEADHVNSIIAAGRADLCAL-ARP 719 (765)
T ss_pred CcCc--cccHH----HHHHHHHH-----------cCCEEEEeCCCCCHHHHHHHHHcCCcceeeE-cHH
Confidence 0111 11122 33444555 57799998888888888888888 8999998 775
No 92
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=97.59 E-value=0.00029 Score=64.72 Aligned_cols=164 Identities=11% Similarity=0.018 Sum_probs=99.8
Q ss_pred CCchhHHHHHHHhhcccCCCceeecccccccCC--Ccccc--ccCchhhhhhhhcccce--ee--eCChhhHHHhhhccc
Q psy7344 40 DDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPH--CDGID--INIGCPQMVAKRGHYGA--YL--QDDWPLLTELGFKTR 111 (240)
Q Consensus 40 ~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~--~~~~d--l~~gC~~~i~~~g~~ga--~l--~~d~eli~~i~~~~~ 111 (240)
.+|+|+.+++.++. ++ .+++|.+. .|. .+..+ ++.| +..+++||++.+ |. ..+|..+.+++...
T Consensus 116 ~~p~l~~~ii~~vr-~a---~VtvkiRl--~~~~~~e~a~~l~eAG-ad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~- 187 (369)
T TIGR01304 116 LKPELLGERIAEVR-DS---GVITAVRV--SPQNAREIAPIVVKAG-ADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL- 187 (369)
T ss_pred cChHHHHHHHHHHH-hc---ceEEEEec--CCcCHHHHHHHHHHCC-CCEEEEeccchhhhccCCCCCHHHHHHHHHHC-
Confidence 57999999999998 23 26666543 221 11111 2667 577888988765 21 34677777766543
Q ss_pred CCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 112 SHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 112 ~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
+.|+++ ++..+..++.++++.|+|+|+++.|.-.. ...-.|. -......+.++..+.++.... ..+
T Consensus 188 --~IPVI~----G~V~t~e~A~~~~~aGaDgV~~G~gg~~~--~~~~lg~-~~p~~~ai~d~~~a~~~~~~e-----~g~ 253 (369)
T TIGR01304 188 --DVPVIA----GGVNDYTTALHLMRTGAAGVIVGPGGANT--TRLVLGI-EVPMATAIADVAAARRDYLDE-----TGG 253 (369)
T ss_pred --CCCEEE----eCCCCHHHHHHHHHcCCCEEEECCCCCcc--cccccCC-CCCHHHHHHHHHHHHHHHHHh-----cCC
Confidence 468764 44666667777777899999977653221 1111111 123445566665443321000 000
Q ss_pred CCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 192 NDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 192 ~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
..+||.+-..+.+-.++++++..|||++.+-.+.
T Consensus 254 r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~ 287 (369)
T TIGR01304 254 RYVHVIADGGIETSGDLVKAIACGADAVVLGSPL 287 (369)
T ss_pred CCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHH
Confidence 2478888888888899999998899999995444
No 93
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=97.58 E-value=0.00023 Score=65.40 Aligned_cols=88 Identities=15% Similarity=0.118 Sum_probs=61.9
Q ss_pred HHHHHHHHHHcc-CCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|+.+.+ |+|+||||.|| |..-.....||..+......+.+|++++++.+ +.++||
T Consensus 150 ~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~v---------g~~~~v 220 (370)
T cd02929 150 RWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAV---------GDDCAV 220 (370)
T ss_pred HHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHc---------CCCceE
Confidence 456677777755 89999999999 55222234688889899999999999999982 134566
Q ss_pred EEeeeh------------hcHHHHHHHHhCCCCeEEEec
Q psy7344 197 GCPQMV------------AKRGHYGAYLQDDWPLLTELG 223 (240)
Q Consensus 197 svK~r~------------~~~~~~~~~l~~G~~~itih~ 223 (240)
.+|+.. +++.++++.|++.+|.+.+..
T Consensus 221 ~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~~D~i~vs~ 259 (370)
T cd02929 221 ATRFSVDELIGPGGIESEGEGVEFVEMLDELPDLWDVNV 259 (370)
T ss_pred EEEecHHHhcCCCCCCCHHHHHHHHHHHHhhCCEEEecC
Confidence 666552 123467777766668887744
No 94
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=97.54 E-value=4.9e-05 Score=67.79 Aligned_cols=116 Identities=15% Similarity=0.170 Sum_probs=70.7
Q ss_pred ccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCccccccCchhhhhhhhc
Q psy7344 11 TEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRG 90 (240)
Q Consensus 11 ~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~dl~~gC~~~i~~~g 90 (240)
.+.++|.|++|++||+.+.. ..+ +++.++. +..+.|+.+|.. ..+.....-...| ...+.+++
T Consensus 139 ~~~g~~~i~l~~~~p~~~~~---------~~~----~~i~~l~-~~~~~pvivK~v--~s~~~a~~a~~~G-~d~I~v~~ 201 (299)
T cd02809 139 EAAGYKALVLTVDTPVLGRR---------LTW----DDLAWLR-SQWKGPLILKGI--LTPEDALRAVDAG-ADGIVVSN 201 (299)
T ss_pred HHcCCCEEEEecCCCCCCCC---------CCH----HHHHHHH-HhcCCCEEEeec--CCHHHHHHHHHCC-CCEEEEcC
Confidence 45679999999999985433 233 4466666 344689888721 1110000012445 34555543
Q ss_pred ccceee---eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecC
Q psy7344 91 HYGAYL---QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINI 147 (240)
Q Consensus 91 ~~ga~l---~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~ 147 (240)
+.|..+ ...++.+.++...+.+ +.|++.. +++.+..++++.+..|+|+|++++
T Consensus 202 ~gG~~~~~g~~~~~~l~~i~~~~~~-~ipvia~---GGI~~~~d~~kal~lGAd~V~ig~ 257 (299)
T cd02809 202 HGGRQLDGAPATIDALPEIVAAVGG-RIEVLLD---GGIRRGTDVLKALALGADAVLIGR 257 (299)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhcC-CCeEEEe---CCCCCHHHHHHHHHcCCCEEEEcH
Confidence 333321 3346777777655432 3676655 888888899999988999999977
No 95
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=97.44 E-value=0.00037 Score=63.17 Aligned_cols=136 Identities=20% Similarity=0.187 Sum_probs=86.8
Q ss_pred CCCccccccCchh----hhh-----hhhcccceeeeCChhhHHHhhhcccC---CCCceeEEee-------cCCHHHHHH
Q psy7344 71 PHCDGIDINIGCP----QMV-----AKRGHYGAYLQDDWPLLTELGFKTRS---HMCGHSLMFC-------GNDSKNLTE 131 (240)
Q Consensus 71 p~~~~~dl~~gC~----~~i-----~~~g~~ga~l~~d~eli~~i~~~~~~---~~~pvivqi~-------g~d~~~~~~ 131 (240)
-.+|+++++++|- +++ .+.-.||..+..++.++.+++.+++. .+.|+.+.|. +.+.+++.+
T Consensus 166 aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ 245 (336)
T cd02932 166 AGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVE 245 (336)
T ss_pred cCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHH
Confidence 4578889998872 222 22234676666566666666655543 2467888775 236788888
Q ss_pred HHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHH
Q psy7344 132 AAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGA 210 (240)
Q Consensus 132 aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~ 210 (240)
+++.+++ +.|.|++..|....... .-.+. ..+.+.+++ +++. +++||.+-.++.+..++.+
T Consensus 246 ia~~Le~~gvd~iev~~g~~~~~~~-~~~~~--~~~~~~~~~----ir~~-----------~~iPVi~~G~i~t~~~a~~ 307 (336)
T cd02932 246 LAKALKELGVDLIDVSSGGNSPAQK-IPVGP--GYQVPFAER----IRQE-----------AGIPVIAVGLITDPEQAEA 307 (336)
T ss_pred HHHHHHHcCCCEEEECCCCCCcccc-cCCCc--cccHHHHHH----HHhh-----------CCCCEEEeCCCCCHHHHHH
Confidence 9999876 78999997764221100 00000 123344444 4444 5779998888888888888
Q ss_pred HHhC-CCCeEEEeccc
Q psy7344 211 YLQD-DWPLLTELGKM 225 (240)
Q Consensus 211 ~l~~-G~~~itih~R~ 225 (240)
.+++ .+|.|.+ ||-
T Consensus 308 ~l~~g~aD~V~~-gR~ 322 (336)
T cd02932 308 ILESGRADLVAL-GRE 322 (336)
T ss_pred HHHcCCCCeehh-hHH
Confidence 8888 7999988 774
No 96
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=97.30 E-value=0.00031 Score=63.05 Aligned_cols=144 Identities=11% Similarity=0.074 Sum_probs=81.9
Q ss_pred ccCC-CCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeeccccccc--CC-----------Ccc-
Q psy7344 11 TEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAE--PH-----------CDG- 75 (240)
Q Consensus 11 ~~~~-~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~la--p~-----------~~~- 75 (240)
.+.+ +|.|.||+.||.-. + +..+-.|++.+.+++.++. +..+.|+++|-.-... .+ ++.
T Consensus 115 ~~~g~ad~iElN~ScPn~~---~--~~~~g~d~~~~~~i~~~v~-~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i 188 (310)
T PRK02506 115 QASDFNGLVELNLSCPNVP---G--KPQIAYDFETTEQILEEVF-TYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFV 188 (310)
T ss_pred hhcCCCCEEEEECCCCCCC---C--ccccccCHHHHHHHHHHHH-HhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEE
Confidence 3445 89999999999732 1 3445668999999999998 4668899987321100 00 000
Q ss_pred -----------ccccCchhhhhhh-hcccceee-eC----ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc
Q psy7344 76 -----------IDINIGCPQMVAK-RGHYGAYL-QD----DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP 138 (240)
Q Consensus 76 -----------~dl~~gC~~~i~~-~g~~ga~l-~~----d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~ 138 (240)
+|..-+ ..... ...+|-.. .. ...+++++...+. .+.|++.. +.+.+..++++++..
T Consensus 189 ~~~nt~~~~~~iD~~~~--~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~-~~ipIig~---GGI~s~~da~e~i~a 262 (310)
T PRK02506 189 NCINSIGNGLVIDPEDE--TVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLN-PSIQIIGT---GGVKTGRDAFEHILC 262 (310)
T ss_pred EEeccCCCceEEecCCC--CccccCCCCCCcCCchhccHHHHHHHHHHHHhcC-CCCCEEEE---CCCCCHHHHHHHHHc
Confidence 111111 01100 00111111 00 0123333322221 13565544 778888999999999
Q ss_pred CCCEEEecCCCchhhhhccccccccc-CCHHHHHHHHHHhhhc
Q psy7344 139 HCDGIDINIGCPQMVAKRGHYGAYLQ-DDWPLLTNLVYSPNMV 180 (240)
Q Consensus 139 ~~d~Idin~gCP~~~~~~~g~G~~l~-~~p~~i~~iv~~~~~~ 180 (240)
|++.|++.-+ ++ ..|+.+.+|.+.+.+-
T Consensus 263 GA~~Vqv~ta--------------~~~~gp~~~~~i~~~L~~~ 291 (310)
T PRK02506 263 GASMVQVGTA--------------LHKEGPAVFERLTKELKAI 291 (310)
T ss_pred CCCHHhhhHH--------------HHHhChHHHHHHHHHHHHH
Confidence 9888877433 33 4789999988887653
No 97
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.24 E-value=0.0012 Score=57.45 Aligned_cols=107 Identities=6% Similarity=-0.021 Sum_probs=71.5
Q ss_pred eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHH
Q psy7344 97 QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176 (240)
Q Consensus 97 ~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~ 176 (240)
..++++++++...+ ..|+++. +...+..++.+.++.++++|.+|.+ ++.+|+.+.++.+.
T Consensus 60 ~~~~~~i~~i~~~~---~ipv~~~---GGi~s~~~~~~~l~~Ga~~Viigt~--------------~l~~p~~~~ei~~~ 119 (253)
T PRK02083 60 DTMLDVVERVAEQV---FIPLTVG---GGIRSVEDARRLLRAGADKVSINSA--------------AVANPELISEAADR 119 (253)
T ss_pred cchHHHHHHHHHhC---CCCEEee---CCCCCHHHHHHHHHcCCCEEEEChh--------------HhhCcHHHHHHHHH
Confidence 34688888876654 3565543 6666666777777778999988755 56899999999887
Q ss_pred hh-hccccccCCCCCC--CCeeeEEeee-h-----hcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 177 PN-MVHFVIAEPHCDG--NDINIGCPQM-V-----AKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 177 ~~-~~~~~i~~~~~~~--~~~pvsvK~r-~-----~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.. +.+ +.+-|+.+ ...|+++|+| + .+..++++.+++ |++.+.+|...
T Consensus 120 ~g~~~i--v~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~ 176 (253)
T PRK02083 120 FGSQCI--VVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMD 176 (253)
T ss_pred cCCCCE--EEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCc
Confidence 62 111 11111110 0136789999 2 145788999999 99999997733
No 98
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=97.22 E-value=0.002 Score=52.21 Aligned_cols=90 Identities=12% Similarity=-0.048 Sum_probs=64.7
Q ss_pred CCceeEEeecCCHHHHHH-HHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTE-AAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~-aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
..|+++++..++..+... +++.+ +.++|+|++|.+|+.. ++...++++++++.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~--------------~~~~~~~~~~i~~~----------- 111 (200)
T cd04722 57 DLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYL--------------AREDLELIRELREA----------- 111 (200)
T ss_pred CCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcH--------------HHHHHHHHHHHHHh-----------
Confidence 478999998877665443 23444 4589999999998643 56667777777776
Q ss_pred C-CeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 192 N-DINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 192 ~-~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
. ++|+.+|++.....+.+. +.+ |++.|.+++++..+.
T Consensus 112 ~~~~~v~~~~~~~~~~~~~~-~~~~g~d~i~~~~~~~~~~ 150 (200)
T cd04722 112 VPDVKVVVKLSPTGELAAAA-AEEAGVDEVGLGNGGGGGG 150 (200)
T ss_pred cCCceEEEEECCCCccchhh-HHHcCCCEEEEcCCcCCCC
Confidence 3 689999998432211111 677 999999999988765
No 99
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.21 E-value=0.0029 Score=53.99 Aligned_cols=106 Identities=11% Similarity=0.061 Sum_probs=71.0
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
+.++++++...+ ..|+.+ ++.+.+..++.+.++.|++.|-++. .++.+|+.+.++++...
T Consensus 60 ~~~~i~~i~~~~---~~pi~~---ggGI~~~ed~~~~~~~Ga~~vvlgs--------------~~l~d~~~~~~~~~~~g 119 (230)
T TIGR00007 60 NLPVIKKIVRET---GVPVQV---GGGIRSLEDVEKLLDLGVDRVIIGT--------------AAVENPDLVKELLKEYG 119 (230)
T ss_pred cHHHHHHHHHhc---CCCEEE---eCCcCCHHHHHHHHHcCCCEEEECh--------------HHhhCHHHHHHHHHHhC
Confidence 356777765432 345544 3555666667777777888875533 35689999999998764
Q ss_pred hccccccCCCCCCCCeeeEEeee--------h-----hcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 179 MVHFVIAEPHCDGNDINIGCPQM--------V-----AKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 179 ~~~~~i~~~~~~~~~~pvsvK~r--------~-----~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
.. .+.++++.| + .+..++++.+++ |++.+++|.+++.+.+ .+ .||+
T Consensus 120 ~~------------~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~--~g-~~~~ 179 (230)
T TIGR00007 120 PE------------RIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGTL--SG-PNFE 179 (230)
T ss_pred CC------------cEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCc--CC-CCHH
Confidence 21 234444444 1 245789999999 9999999999998764 33 5664
No 100
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.14 E-value=0.0018 Score=59.57 Aligned_cols=170 Identities=11% Similarity=0.054 Sum_probs=93.6
Q ss_pred CCCchhHHHHHHHhhcccCCCceeecccccccCCCcccc--ccCchhhhhhhhcccce--ee-eC-ChhhHHHhhhcccC
Q psy7344 39 QDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGID--INIGCPQMVAKRGHYGA--YL-QD-DWPLLTELGFKTRS 112 (240)
Q Consensus 39 ~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~d--l~~gC~~~i~~~g~~ga--~l-~~-d~eli~~i~~~~~~ 112 (240)
+.+|+++.+++.++. ....+ ++.+..-....+..+ +..| +..+++|+|+.. +. .. +|..+.+.+.+.
T Consensus 114 P~~p~l~~~iv~~~~--~~~V~--v~vr~~~~~~~e~a~~l~eaG-vd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~-- 186 (368)
T PRK08649 114 PIKPELITERIAEIR--DAGVI--VAVSLSPQRAQELAPTVVEAG-VDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL-- 186 (368)
T ss_pred CCCHHHHHHHHHHHH--hCeEE--EEEecCCcCHHHHHHHHHHCC-CCEEEEeccchhhhccCCcCCHHHHHHHHHHC--
Confidence 457888888888887 22333 332210000111111 2556 567888888754 22 22 577666655543
Q ss_pred CCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 113 HMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 113 ~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
+.|+++ ++..+...+.++++.|+|+|++++|.-...+.+.-.|.. ......+.++.++.++..... .+.
T Consensus 187 -~ipVIa----G~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g~g-~p~~~ai~~~~~a~~~~l~~~-----~~~ 255 (368)
T PRK08649 187 -DVPVIV----GGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLGIG-VPMATAIADVAAARRDYLDET-----GGR 255 (368)
T ss_pred -CCCEEE----eCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCcccCCCC-cCHHHHHHHHHHHHHHhhhhh-----cCC
Confidence 467655 445555566667777999999998832111111111111 122233444443322210000 002
Q ss_pred CeeeEEeeehhcHHHHHHHHhCCCCeEEEecccc
Q psy7344 193 DINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMA 226 (240)
Q Consensus 193 ~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~~ 226 (240)
++||.+-..+.+-.++++++..|||++.+-.|..
T Consensus 256 ~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa 289 (368)
T PRK08649 256 YVHVIADGGIGTSGDIAKAIACGADAVMLGSPLA 289 (368)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCeecccchhc
Confidence 5788888888888999999988999999955543
No 101
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=97.11 E-value=0.0065 Score=54.96 Aligned_cols=129 Identities=12% Similarity=0.011 Sum_probs=77.4
Q ss_pred ecccccccCCCccccccCchhhhhhhhcccceee-eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCC
Q psy7344 63 MGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYL-QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCD 141 (240)
Q Consensus 63 vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l-~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d 141 (240)
++.+.+.+||...++..+. ..++..|+.|... ...|+-..+.+..++. ...+....+.+++....+..+++.+++
T Consensus 33 l~~Piv~apM~~vt~~~ma--~ava~~GglGvi~~~~~~~~~~~~i~~vk~--~l~v~~~~~~~~~~~~~~~~l~eagv~ 108 (325)
T cd00381 33 LNIPLVSAPMDTVTESEMA--IAMARLGGIGVIHRNMSIEEQAEEVRKVKG--RLLVGAAVGTREDDKERAEALVEAGVD 108 (325)
T ss_pred cCCCEEecCCCcCCcHHHH--HHHHHCCCEEEEeCCCCHHHHHHHHHHhcc--CceEEEecCCChhHHHHHHHHHhcCCC
Confidence 3445677899998887774 6677777766643 2234444444433331 222222233455555566666777899
Q ss_pred EEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEE
Q psy7344 142 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLT 220 (240)
Q Consensus 142 ~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~it 220 (240)
.|.++.+- | +++...++++.+++.. .++||.+ -.-.+.+.++.+.+ |+|+|.
T Consensus 109 ~I~vd~~~----------G-----~~~~~~~~i~~ik~~~----------p~v~Vi~--G~v~t~~~A~~l~~aGaD~I~ 161 (325)
T cd00381 109 VIVIDSAH----------G-----HSVYVIEMIKFIKKKY----------PNVDVIA--GNVVTAEAARDLIDAGADGVK 161 (325)
T ss_pred EEEEECCC----------C-----CcHHHHHHHHHHHHHC----------CCceEEE--CCCCCHHHHHHHHhcCCCEEE
Confidence 99988751 1 2244556777777651 1245544 11245677888888 999999
Q ss_pred Ee
Q psy7344 221 EL 222 (240)
Q Consensus 221 ih 222 (240)
+|
T Consensus 162 vg 163 (325)
T cd00381 162 VG 163 (325)
T ss_pred EC
Confidence 86
No 102
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=97.10 E-value=0.0025 Score=58.18 Aligned_cols=151 Identities=14% Similarity=0.134 Sum_probs=92.0
Q ss_pred ccCCCCeecccCC---------CchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCccccccCc
Q psy7344 11 TEPHCDGIDINIG---------CPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDINIG 81 (240)
Q Consensus 11 ~~~~~d~id~N~g---------cP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~dl~~g 81 (240)
.+.|+|.|+|..+ ||...-+...||..|.+...++.+++.++. +....+..+..+.. . .|...
T Consensus 147 ~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR-~~vG~d~~v~iRi~---~---~D~~~- 218 (353)
T cd02930 147 REAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVR-AAVGEDFIIIYRLS---M---LDLVE- 218 (353)
T ss_pred HHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHH-HHcCCCceEEEEec---c---cccCC-
Confidence 4568999999633 897655555577779999999999999998 34333322321100 0 00000
Q ss_pred hhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhccccc
Q psy7344 82 CPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYG 160 (240)
Q Consensus 82 C~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G 160 (240)
.+.+.+++.++++.+++ ++|.|.+..|-.-..+... .
T Consensus 219 ----------------------------------------~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~--~ 256 (353)
T cd02930 219 ----------------------------------------GGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTI--A 256 (353)
T ss_pred ----------------------------------------CCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccc--c
Confidence 11355667788888876 7899998665211110000 0
Q ss_pred ccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 161 AYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 161 ~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.. ..+.......+.+++. +++||.+-.++.+..++.+.+++ ++|.|.+ ||-
T Consensus 257 ~~--~~~~~~~~~~~~ik~~-----------v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~-gR~ 308 (353)
T cd02930 257 TS--VPRGAFAWATAKLKRA-----------VDIPVIASNRINTPEVAERLLADGDADMVSM-ARP 308 (353)
T ss_pred cc--CCchhhHHHHHHHHHh-----------CCCCEEEcCCCCCHHHHHHHHHCCCCChhHh-hHH
Confidence 00 0011112344445555 67899988888888888888888 8999988 775
No 103
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=97.08 E-value=0.0029 Score=57.38 Aligned_cols=172 Identities=14% Similarity=0.038 Sum_probs=93.4
Q ss_pred CcccCCCchhHHHHHHHhhcccCCCceeecc-----cc-----cc--cC--CCccccccCchhhhhhhhcccceeeeCCh
Q psy7344 35 GAYLQDDWPLLTELVVHFSWVSKNGPLFMGP-----LF-----IA--EP--HCDGIDINIGCPQMVAKRGHYGAYLQDDW 100 (240)
Q Consensus 35 G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~-----~~-----~l--ap--~~~~~dl~~gC~~~i~~~g~~ga~l~~d~ 100 (240)
+++.+++|++.... ..+.+...+.|+.... .. .. .. .++..++++.|++.+...++++.| ..-.
T Consensus 91 ~~~~~~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f-~~~l 168 (333)
T TIGR02151 91 QRAALKDPETADTF-EVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNF-KGWL 168 (333)
T ss_pred chhhccChhhHhHH-HHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCH-HHHH
Confidence 34446688866554 4444112456665421 00 00 01 245666777776766555555443 1112
Q ss_pred hhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhh----hc--ccccccccCCHHH-HHH
Q psy7344 101 PLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVA----KR--GHYGAYLQDDWPL-LTN 172 (240)
Q Consensus 101 eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~----~~--~g~G~~l~~~p~~-i~~ 172 (240)
+.++.+...+ +.||+++..|.. ...+.++.+++ |+|+|++.-+-....+ .+ ..+.+....+|-. ..+
T Consensus 169 e~i~~i~~~~---~vPVivK~~g~g--~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~ 243 (333)
T TIGR02151 169 EKIAEICSQL---SVPVIVKEVGFG--ISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAA 243 (333)
T ss_pred HHHHHHHHhc---CCCEEEEecCCC--CCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHH
Confidence 5666666554 589999976543 23566677755 8999999532111100 00 0000112244421 111
Q ss_pred HHHHhhh-ccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 173 LVYSPNM-VHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 173 iv~~~~~-~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
.+..+++ . .++||.+-..+.+..+.++.+..|||++.+ ||.
T Consensus 244 ~l~~~~~~~-----------~~ipVIasGGI~~~~di~kaLalGAd~V~i-gr~ 285 (333)
T TIGR02151 244 SLLEVRSDA-----------PDAPIIASGGLRTGLDVAKAIALGADAVGM-ARP 285 (333)
T ss_pred HHHHHHhcC-----------CCCeEEEECCCCCHHHHHHHHHhCCCeehh-hHH
Confidence 2222222 2 467888888888889999999889999988 664
No 104
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.93 E-value=0.006 Score=52.41 Aligned_cols=114 Identities=7% Similarity=-0.054 Sum_probs=70.0
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
+++.++++.... ..|+++ ++.+.+..++.+.++.|++.|.++.. ++.+|+.+.++++...
T Consensus 64 ~~~~i~~i~~~~---~~~l~v---~GGi~~~~~~~~~~~~Ga~~v~iGs~--------------~~~~~~~~~~i~~~~g 123 (241)
T PRK13585 64 NAEAIEKIIEAV---GVPVQL---GGGIRSAEDAASLLDLGVDRVILGTA--------------AVENPEIVRELSEEFG 123 (241)
T ss_pred cHHHHHHHHHHc---CCcEEE---cCCcCCHHHHHHHHHcCCCEEEEChH--------------HhhChHHHHHHHHHhC
Confidence 356666665432 345544 46666666777777788999877444 5679999999988753
Q ss_pred h-ccccccCCCCCCCCeeeEEeeeh---h-cHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 179 M-VHFVIAEPHCDGNDINIGCPQMV---A-KRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 179 ~-~~~~i~~~~~~~~~~pvsvK~r~---~-~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
. .+ +-+=++ .+.++.+|... . ++.++++.+++ |++.|++|.+++...+ .+ .||+
T Consensus 124 ~~~i--~~sid~--~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~--~g-~~~~ 183 (241)
T PRK13585 124 SERV--MVSLDA--KDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLL--EG-VNTE 183 (241)
T ss_pred CCcE--EEEEEe--eCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCc--CC-CCHH
Confidence 2 10 000000 01122222221 1 67899999999 9999999999876442 33 5664
No 105
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=96.90 E-value=0.0055 Score=56.64 Aligned_cols=139 Identities=16% Similarity=0.182 Sum_probs=81.7
Q ss_pred CCccccccC---ch--hhhhh-----hhcccceeeeCChhhHHHhhhcccC---CCCceeEEeec---------------
Q psy7344 72 HCDGIDINI---GC--PQMVA-----KRGHYGAYLQDDWPLLTELGFKTRS---HMCGHSLMFCG--------------- 123 (240)
Q Consensus 72 ~~~~~dl~~---gC--~~~i~-----~~g~~ga~l~~d~eli~~i~~~~~~---~~~pvivqi~g--------------- 123 (240)
.+|+++++. || -+++. +.-.||..+.....++.+++.+++. .+.||.+.|..
T Consensus 163 GfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~ 242 (382)
T cd02931 163 GFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGE 242 (382)
T ss_pred CCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccccccccccc
Confidence 456777766 65 23332 1123454444344555555554443 24577777752
Q ss_pred ------CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 124 ------NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 124 ------~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
.+.++..++++++++ ++|.|++..|-....... ... ....+.....+++.+++. +++||
T Consensus 243 ~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~--~~~-~~~~~~~~~~~~~~ik~~-----------~~~pv 308 (382)
T cd02931 243 EFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWN--HPP-MYQKKGMYLPYCKALKEV-----------VDVPV 308 (382)
T ss_pred ccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccc--cCC-ccCCcchhHHHHHHHHHH-----------CCCCE
Confidence 246778888999976 799999987742111000 000 000111112344445555 56799
Q ss_pred EEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 197 GCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 197 svK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.+-.++.+..+..+.+++ ++|.|.+ ||-
T Consensus 309 i~~G~i~~~~~~~~~l~~g~~D~V~~-gR~ 337 (382)
T cd02931 309 IMAGRMEDPELASEAINEGIADMISL-GRP 337 (382)
T ss_pred EEeCCCCCHHHHHHHHHcCCCCeeee-chH
Confidence 988888888888888999 8999998 875
No 106
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=96.77 E-value=0.0088 Score=52.07 Aligned_cols=114 Identities=8% Similarity=-0.008 Sum_probs=72.8
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
++++++++...+ +.|+.+ ++.+.+..++.+++..|++.|-++.. ++.+|+.++++.+...
T Consensus 62 n~~~i~~i~~~~---~~pv~~---~GGi~s~~d~~~~~~~Ga~~vivgt~--------------~~~~p~~~~~~~~~~~ 121 (254)
T TIGR00735 62 MIDVVERTAETV---FIPLTV---GGGIKSIEDVDKLLRAGADKVSINTA--------------AVKNPELIYELADRFG 121 (254)
T ss_pred hHHHHHHHHHhc---CCCEEE---ECCCCCHHHHHHHHHcCCCEEEEChh--------------HhhChHHHHHHHHHcC
Confidence 467777776543 356543 35566666777777778888887655 5689999999987653
Q ss_pred -hccccccCCCCCCCCeee------EEeee-h-----hcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCCC
Q psy7344 179 -MVHFVIAEPHCDGNDINI------GCPQM-V-----AKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 179 -~~~~~i~~~~~~~~~~pv------svK~r-~-----~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw~ 239 (240)
+.+ +-+=|+. +.++ -+|+| + .+..++++.+++ |++.|.+|++++... .+-.||+
T Consensus 122 ~~~i--v~slD~~--~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~---~~g~~~~ 189 (254)
T TIGR00735 122 SQCI--VVAIDAK--RVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGT---KSGYDLE 189 (254)
T ss_pred CCCE--EEEEEec--cCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccC---CCCCCHH
Confidence 221 1000000 0111 36777 2 356899999999 999999999988432 2345653
No 107
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.76 E-value=0.0019 Score=59.31 Aligned_cols=144 Identities=12% Similarity=0.046 Sum_probs=87.5
Q ss_pred cccCCCCeecccCCC---------chhhhhccCCCcccCCCchhHHHHHHHhhcccC--CCceeecccccc-cCCC-c-c
Q psy7344 10 ETEPHCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK--NGPLFMGPLFIA-EPHC-D-G 75 (240)
Q Consensus 10 ~~~~~~d~id~N~gc---------P~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~--~~p~~vk~~~~l-ap~~-~-~ 75 (240)
..+.|+|.|+|+++| |..+.+...||+.|.+...++.+|+.++. +.. +-|+.++..... ..+. + .
T Consensus 153 a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air-~~vG~d~~v~vRis~~~~~~~~~~~g 231 (361)
T cd04747 153 ARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIR-AAVGPDFPIILRFSQWKQQDYTARLA 231 (361)
T ss_pred HHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHcCCCCeEEEEECcccccccccCCC
Confidence 445689999999999 99988888899999999999999999998 343 346666532110 1111 0 1
Q ss_pred ccc-----------cCchhhhhhhhccccee-----eeCChhhHHHhhhcccCCCCceeEEeec----------------
Q psy7344 76 IDI-----------NIGCPQMVAKRGHYGAY-----LQDDWPLLTELGFKTRSHMCGHSLMFCG---------------- 123 (240)
Q Consensus 76 ~dl-----------~~gC~~~i~~~g~~ga~-----l~~d~eli~~i~~~~~~~~~pvivqi~g---------------- 123 (240)
.++ ..| ...+ |..++.+ -..++++...++..+ ..|+++. ++
T Consensus 232 ~~~~e~~~~~~~l~~~g-vd~i--~vs~g~~~~~~~~~~~~~~~~~~k~~~---~~pv~~~-G~i~~~~~~~~~~~~~~~ 304 (361)
T cd04747 232 DTPDELEALLAPLVDAG-VDIF--HCSTRRFWEPEFEGSELNLAGWTKKLT---GLPTITV-GSVGLDGDFIGAFAGDEG 304 (361)
T ss_pred CCHHHHHHHHHHHHHcC-CCEE--EecCCCccCCCcCccchhHHHHHHHHc---CCCEEEE-CCcccccccccccccccc
Confidence 111 111 0111 1112211 011234444444332 3676654 11
Q ss_pred CCHHHHHHHHHHHccC-CCEEEecCCCchhhhhcccccccccCCHHHHHHHHH
Q psy7344 124 NDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175 (240)
Q Consensus 124 ~d~~~~~~aa~~le~~-~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~ 175 (240)
+|+.+..++.+.++++ +|.|.++++ ++.||+++.++.+
T Consensus 305 ~~~~~~~~a~~~l~~g~~D~V~~gR~--------------~iadP~~~~k~~~ 343 (361)
T cd04747 305 ASPASLDRLLERLERGEFDLVAVGRA--------------LLSDPAWVAKVRE 343 (361)
T ss_pred cccCCHHHHHHHHHCCCCCeehhhHH--------------HHhCcHHHHHHHc
Confidence 1234666777888874 899988776 6899999888765
No 108
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=96.76 E-value=0.0013 Score=56.82 Aligned_cols=110 Identities=11% Similarity=0.014 Sum_probs=63.8
Q ss_pred ccCCCcccCCCchhHHHHHHHhhcccC--CCce---eecccccccCCCccccc-----cCchhhhhhhhcccce--eeeC
Q psy7344 31 RGHYGAYLQDDWPLLTELVVHFSWVSK--NGPL---FMGPLFIAEPHCDGIDI-----NIGCPQMVAKRGHYGA--YLQD 98 (240)
Q Consensus 31 k~~~G~~l~~~~~l~~~iv~ql~~~~~--~~p~---~vk~~~~lap~~~~~dl-----~~gC~~~i~~~g~~ga--~l~~ 98 (240)
|-..|+.++++|+++.+++.++. +.. +.++ .++...+.....+..++ +.| ...+..|+++.. +.-.
T Consensus 100 kvviGs~~l~~p~l~~~i~~~~~-~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G-~~~iiv~~~~~~g~~~G~ 177 (241)
T PRK14024 100 RVNIGTAALENPEWCARVIAEHG-DRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAG-CSRYVVTDVTKDGTLTGP 177 (241)
T ss_pred EEEECchHhCCHHHHHHHHHHhh-hhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcC-CCEEEEEeecCCCCccCC
Confidence 34678999999999999988775 122 1222 12211111100111111 334 234555554443 3344
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHH---ccCCCEEEecCC
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLA---EPHCDGIDINIG 148 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~l---e~~~d~Idin~g 148 (240)
||+++.++...+ ..|++++ ++..+..++.++. +.|+++|+++++
T Consensus 178 d~~~i~~i~~~~---~ipvias---GGi~s~~D~~~l~~~~~~GvdgV~igra 224 (241)
T PRK14024 178 NLELLREVCART---DAPVVAS---GGVSSLDDLRALAELVPLGVEGAIVGKA 224 (241)
T ss_pred CHHHHHHHHhhC---CCCEEEe---CCCCCHHHHHHHhhhccCCccEEEEeHH
Confidence 799999987653 4788776 6555555655553 358999999888
No 109
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=96.41 E-value=0.029 Score=51.32 Aligned_cols=132 Identities=13% Similarity=-0.001 Sum_probs=73.5
Q ss_pred CccccccCchhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHc-cCCCEEEecCCCc-
Q psy7344 73 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAE-PHCDGIDINIGCP- 150 (240)
Q Consensus 73 ~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le-~~~d~Idin~gCP- 150 (240)
++.++++++|+|.+...+++..|-. -.+.++.+...+ +.||++++.|.. .+ .+.++.++ .|+|+|++.-+..
T Consensus 149 adal~l~l~~~qe~~~p~g~~~f~~-~le~i~~i~~~~---~vPVivK~~g~g-~s-~~~a~~l~~~Gvd~I~Vsg~GGt 222 (352)
T PRK05437 149 ADALQIHLNPLQELVQPEGDRDFRG-WLDNIAEIVSAL---PVPVIVKEVGFG-IS-KETAKRLADAGVKAIDVAGAGGT 222 (352)
T ss_pred CCcEEEeCccchhhcCCCCcccHHH-HHHHHHHHHHhh---CCCEEEEeCCCC-Cc-HHHHHHHHHcCCCEEEECCCCCC
Confidence 5667777777676655444332210 024455555443 579999986542 22 45556654 4899999843321
Q ss_pred hhhhhcccccc-----cccCCH-----HHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEE
Q psy7344 151 QMVAKRGHYGA-----YLQDDW-----PLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLT 220 (240)
Q Consensus 151 ~~~~~~~g~G~-----~l~~~p-----~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~it 220 (240)
.........+. ....+| +.+.++.++ . .++||.+-..+.+..+.++.+..|||++.
T Consensus 223 ~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~---~-----------~~ipvia~GGI~~~~dv~k~l~~GAd~v~ 288 (352)
T PRK05437 223 SWAAIENYRARDDRLASYFADWGIPTAQSLLEARSL---L-----------PDLPIIASGGIRNGLDIAKALALGADAVG 288 (352)
T ss_pred CccchhhhhhhccccccccccccCCHHHHHHHHHHh---c-----------CCCeEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 10000000000 011222 233333332 1 35688887778888899999988999998
Q ss_pred Eeccc
Q psy7344 221 ELGKM 225 (240)
Q Consensus 221 ih~R~ 225 (240)
+ ||.
T Consensus 289 i-g~~ 292 (352)
T PRK05437 289 M-AGP 292 (352)
T ss_pred E-hHH
Confidence 8 764
No 110
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=96.24 E-value=0.019 Score=47.38 Aligned_cols=73 Identities=16% Similarity=0.154 Sum_probs=47.2
Q ss_pred HHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHH
Q psy7344 131 EAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYG 209 (240)
Q Consensus 131 ~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~ 209 (240)
+-|+..|+ |+-+||.----|..+-..| |-+-|.||..+++|.++ +.+||.+|.|+..+.+ +
T Consensus 25 eQAkIAE~AGA~AVMaLervPadiR~~G--GVaRMsDP~~I~eI~~a---------------VsIPVMAK~RIGHfvE-A 86 (208)
T PF01680_consen 25 EQAKIAEEAGAVAVMALERVPADIRAAG--GVARMSDPKMIKEIMDA---------------VSIPVMAKVRIGHFVE-A 86 (208)
T ss_dssp HHHHHHHHHT-SEEEE-SS-HHHHHHTT--S---S--HHHHHHHHHH----------------SSEEEEEEETT-HHH-H
T ss_pred HHHHHHHHhCCeEEEEeccCCHhHHhcC--CccccCCHHHHHHHHHh---------------eEeceeeccccceeeh-h
Confidence 34566665 7778886666677653333 45558999999999986 6889999999876554 6
Q ss_pred HHHhC-CCCeEEE
Q psy7344 210 AYLQD-DWPLLTE 221 (240)
Q Consensus 210 ~~l~~-G~~~iti 221 (240)
+.|+. |+|+|--
T Consensus 87 qiLealgVD~IDE 99 (208)
T PF01680_consen 87 QILEALGVDYIDE 99 (208)
T ss_dssp HHHHHTT-SEEEE
T ss_pred hhHHHhCCceecc
Confidence 88999 9999865
No 111
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=96.10 E-value=0.051 Score=46.25 Aligned_cols=123 Identities=13% Similarity=0.007 Sum_probs=70.3
Q ss_pred cccccCCCccccccCchhhhhhhhcccceeeeC--ChhhHHHhhhcccCC-CCceeEEeecCCH-HHHHHHHHHHc-cCC
Q psy7344 66 LFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQD--DWPLLTELGFKTRSH-MCGHSLMFCGNDS-KNLTEAAKLAE-PHC 140 (240)
Q Consensus 66 ~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~--d~eli~~i~~~~~~~-~~pvivqi~g~d~-~~~~~aa~~le-~~~ 140 (240)
+.+++||++.+|..+. ..+...|..|..... +.+.+.+...++++. +.|+.+++..++. ....+.++.+. .++
T Consensus 4 pi~~a~m~g~~~~~~~--~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~ 81 (236)
T cd04730 4 PIIQAPMAGVSTPELA--AAVSNAGGLGFIGAGYLTPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGV 81 (236)
T ss_pred CEECCCCCCCCCHHHH--HHHHhCCCccccCCCCCCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCC
Confidence 4578899999988875 555544422222111 223333333333222 2477788887765 34455555554 489
Q ss_pred CEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeE
Q psy7344 141 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 141 d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~i 219 (240)
|+|.++.+++ ++. ++.+++ ..+++.++.. +.+.++.+.+ |+|+|
T Consensus 82 d~v~l~~~~~----------------~~~----~~~~~~------------~~i~~i~~v~---~~~~~~~~~~~gad~i 126 (236)
T cd04730 82 PVVSFSFGPP----------------AEV----VERLKA------------AGIKVIPTVT---SVEEARKAEAAGADAL 126 (236)
T ss_pred CEEEEcCCCC----------------HHH----HHHHHH------------cCCEEEEeCC---CHHHHHHHHHcCCCEE
Confidence 9999976621 222 223222 2456666543 2345666777 99999
Q ss_pred EEeccc
Q psy7344 220 TELGKM 225 (240)
Q Consensus 220 tih~R~ 225 (240)
.+|++.
T Consensus 127 ~~~~~~ 132 (236)
T cd04730 127 VAQGAE 132 (236)
T ss_pred EEeCcC
Confidence 999983
No 112
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=95.94 E-value=0.045 Score=50.33 Aligned_cols=100 Identities=13% Similarity=-0.011 Sum_probs=65.9
Q ss_pred CChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHh
Q psy7344 98 DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSP 177 (240)
Q Consensus 98 ~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~ 177 (240)
.+|+.|+.+.... +.|++++ . +....++.+..+.|+|+|++.-.. . +.-++ ....++.+.++.+++
T Consensus 215 ~~w~~i~~l~~~~---~~PvivK-G---v~~~eda~~a~~~Gvd~I~VS~HG--G---rq~~~--~~a~~~~L~ei~~av 280 (367)
T TIGR02708 215 LSPRDIEEIAGYS---GLPVYVK-G---PQCPEDADRALKAGASGIWVTNHG--G---RQLDG--GPAAFDSLQEVAEAV 280 (367)
T ss_pred CCHHHHHHHHHhc---CCCEEEe-C---CCCHHHHHHHHHcCcCEEEECCcC--c---cCCCC--CCcHHHHHHHHHHHh
Confidence 3588888886543 4799988 1 222334555556799999985442 1 11111 135677777777664
Q ss_pred hhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 178 NMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 178 ~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
.. ++||.+-..+.+-.++++++.-||+++.+ ||.
T Consensus 281 ~~-------------~i~vi~dGGIr~g~Dv~KaLalGAd~V~i-gR~ 314 (367)
T TIGR02708 281 DK-------------RVPIVFDSGVRRGQHVFKALASGADLVAL-GRP 314 (367)
T ss_pred CC-------------CCcEEeeCCcCCHHHHHHHHHcCCCEEEE-cHH
Confidence 32 35777776777788899888889999988 886
No 113
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=95.90 E-value=0.063 Score=48.18 Aligned_cols=123 Identities=7% Similarity=-0.059 Sum_probs=70.3
Q ss_pred ccccCCCccccccCchhhhhhhhcccceee--eCChhhHHHhhhcccC-CCCceeEEeecCCHHHHHHHHH-HHccCCCE
Q psy7344 67 FIAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELGFKTRS-HMCGHSLMFCGNDSKNLTEAAK-LAEPHCDG 142 (240)
Q Consensus 67 ~~lap~~~~~dl~~gC~~~i~~~g~~ga~l--~~d~eli~~i~~~~~~-~~~pvivqi~g~d~~~~~~aa~-~le~~~d~ 142 (240)
.+.+||...++-.+ ...++..|+.|..- ...++.+++-..+++. .+.|+-+++....+. +.+..+ .++.+++.
T Consensus 14 ii~apM~~~s~~~l--a~avs~aGglG~l~~~~~~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~-~~~~~~~~~~~~v~~ 90 (307)
T TIGR03151 14 IFQGGMAWVATGSL--AAAVSNAGGLGIIGAGNAPPDVVRKEIRKVKELTDKPFGVNIMLLSPF-VDELVDLVIEEKVPV 90 (307)
T ss_pred EEcCCCCCCCCHHH--HHHHHhCCCcceeccccCCHHHHHHHHHHHHHhcCCCcEEeeecCCCC-HHHHHHHHHhCCCCE
Confidence 46678887665444 24566667666532 1234555443333322 246888887543333 233444 34667888
Q ss_pred EEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEE
Q psy7344 143 IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 143 Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~iti 221 (240)
|.++.|.| . ++++.+++. .+.|.+.+ .+.+.++.+++ |+|.|++
T Consensus 91 v~~~~g~p-----------------~---~~i~~lk~~------------g~~v~~~v---~s~~~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 91 VTTGAGNP-----------------G---KYIPRLKEN------------GVKVIPVV---ASVALAKRMEKAGADAVIA 135 (307)
T ss_pred EEEcCCCc-----------------H---HHHHHHHHc------------CCEEEEEc---CCHHHHHHHHHcCCCEEEE
Confidence 87765532 1 234444432 33455433 34567888999 9999999
Q ss_pred eccccc
Q psy7344 222 LGKMAM 227 (240)
Q Consensus 222 h~R~~~ 227 (240)
|||...
T Consensus 136 ~g~eag 141 (307)
T TIGR03151 136 EGMESG 141 (307)
T ss_pred ECcccC
Confidence 999443
No 114
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=95.84 E-value=0.019 Score=51.04 Aligned_cols=137 Identities=20% Similarity=0.190 Sum_probs=77.3
Q ss_pred cCCCccccccCchhhhhhhhcccceeeeCChhhHHHhhhcccC-CCCceeEEeec--CCHHHHHHHHHHHccCCCEEE-e
Q psy7344 70 EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRS-HMCGHSLMFCG--NDSKNLTEAAKLAEPHCDGID-I 145 (240)
Q Consensus 70 ap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~-~~~pvivqi~g--~d~~~~~~aa~~le~~~d~Id-i 145 (240)
++.+|++++|+.||..-. +..+..++++...+...++. .+.|++++|.- .+......+.+..+.++++|. +
T Consensus 122 ~~~ad~lElN~ScPn~~~-----~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~ 196 (295)
T PF01180_consen 122 EAGADALELNLSCPNVPG-----GRPFGQDPELVAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAI 196 (295)
T ss_dssp HHHCSEEEEESTSTTSTT-----SGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE-
T ss_pred cCcCCceEEEeeccCCCC-----ccccccCHHHHHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEe
Confidence 366899999999987431 11222334555555433332 25899999976 355555555555566888877 3
Q ss_pred cC--CCc---------hhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC
Q psy7344 146 NI--GCP---------QMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD 214 (240)
Q Consensus 146 n~--gCP---------~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~ 214 (240)
|. ..+ ......+|+.. ..-....-+.++.+++.+ +.++|+..=.-+.+..+..+.+..
T Consensus 197 Nt~~~~~~id~~~~~~~~~~~~gGlSG--~~i~p~aL~~V~~~~~~~---------~~~i~Iig~GGI~s~~da~e~l~a 265 (295)
T PF01180_consen 197 NTFGQGDAIDLETRRPVLGNGFGGLSG--PAIRPIALRWVRELRKAL---------GQDIPIIGVGGIHSGEDAIEFLMA 265 (295)
T ss_dssp --EEEEE-EETTTTEESSSGGEEEEEE--GGGHHHHHHHHHHHHHHT---------TTSSEEEEESS--SHHHHHHHHHH
T ss_pred cCccCcccccchhcceeeccccCCcCc--hhhhhHHHHHHHHHHhcc---------ccceEEEEeCCcCCHHHHHHHHHh
Confidence 32 111 11001122211 122234445666666661 013788887778888899998888
Q ss_pred CCCeEEEe
Q psy7344 215 DWPLLTEL 222 (240)
Q Consensus 215 G~~~itih 222 (240)
||+.+.++
T Consensus 266 GA~~Vqv~ 273 (295)
T PF01180_consen 266 GASAVQVC 273 (295)
T ss_dssp TESEEEES
T ss_pred CCCHheec
Confidence 99999883
No 115
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=95.75 E-value=0.21 Score=45.29 Aligned_cols=143 Identities=13% Similarity=0.022 Sum_probs=82.6
Q ss_pred cccccccCCCccccccCchhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEeec-CCHHHHHHHHHHHccC--C
Q psy7344 64 GPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCG-NDSKNLTEAAKLAEPH--C 140 (240)
Q Consensus 64 k~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~g-~d~~~~~~aa~~le~~--~ 140 (240)
+.+.+.+.|.. .+|..-......+|..+.....+++.........++ ..+++.+.- -+++++.++.++++.+ +
T Consensus 37 ~~P~~inAM~t--~iN~~LA~~a~~~G~~~~~~k~~~e~~~~~~r~~~~--~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~ 112 (326)
T PRK05458 37 KLPVVPANMQT--IIDEKIAEWLAENGYFYIMHRFDPEARIPFIKDMHE--QGLIASISVGVKDDEYDFVDQLAAEGLTP 112 (326)
T ss_pred cCcEEEecccc--hhHHHHHHHHHHcCCEEEEecCCHHHHHHHHHhccc--cccEEEEEecCCHHHHHHHHHHHhcCCCC
Confidence 33445566643 345431233344443333333356655544443332 234666543 3677888888888885 4
Q ss_pred CEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeE
Q psy7344 141 DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 141 d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~i 219 (240)
|.|-|-..= .+-+.+.++++.+++.. .++||.++--. +.+-++.|.+ |+|.+
T Consensus 113 d~i~iD~a~---------------gh~~~~~e~I~~ir~~~----------p~~~vi~g~V~--t~e~a~~l~~aGad~i 165 (326)
T PRK05458 113 EYITIDIAH---------------GHSDSVINMIQHIKKHL----------PETFVIAGNVG--TPEAVRELENAGADAT 165 (326)
T ss_pred CEEEEECCC---------------CchHHHHHHHHHHHhhC----------CCCeEEEEecC--CHHHHHHHHHcCcCEE
Confidence 988775551 24456667788887762 23677775321 5567788888 99999
Q ss_pred EEe---cccccc---cCCCCCCCCCC
Q psy7344 220 TEL---GKMAML---VGILDNTGSWT 239 (240)
Q Consensus 220 tih---~R~~~~---~~~~~~~adw~ 239 (240)
.++ ||+..+ .+ .+..||+
T Consensus 166 ~vg~~~G~~~~t~~~~g--~~~~~w~ 189 (326)
T PRK05458 166 KVGIGPGKVCITKIKTG--FGTGGWQ 189 (326)
T ss_pred EECCCCCcccccccccC--CCCCccH
Confidence 998 555222 22 3566884
No 116
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=95.69 E-value=0.012 Score=53.51 Aligned_cols=44 Identities=16% Similarity=0.217 Sum_probs=34.7
Q ss_pred CCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCC-------Cceeec
Q psy7344 14 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKN-------GPLFMG 64 (240)
Q Consensus 14 ~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~-------~p~~vk 64 (240)
++|.|.||..||.-. |...+++++.+.+++.++. +..+ .|+++|
T Consensus 166 ~ad~iElNlScPn~~------~~~~~~~~~~~~~i~~~V~-~~~~~~~~~~~~Pv~vK 216 (335)
T TIGR01036 166 LADYLVVNVSSPNTP------GLRDLQYKAELRDLLTAVK-QEQDGLRRVHRVPVLVK 216 (335)
T ss_pred hCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHH-HHHHhhhhccCCceEEE
Confidence 479999999999853 2344688999999999987 3444 899987
No 117
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=95.68 E-value=0.043 Score=50.43 Aligned_cols=88 Identities=18% Similarity=0.269 Sum_probs=60.0
Q ss_pred HHHHHHHHHHcc-CCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|++..+ |+|||||..+- |..--..-.||.++-..--.+.+|++++++++ +-+.||
T Consensus 149 ~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~v---------g~~~~v 219 (363)
T COG1902 149 EDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAV---------GADFPV 219 (363)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHh---------CCCceE
Confidence 456677777755 89999996542 11111223466665444556789999999983 235689
Q ss_pred EEeee---h--------hcHHHHHHHHhC-C-CCeEEEec
Q psy7344 197 GCPQM---V--------AKRGHYGAYLQD-D-WPLLTELG 223 (240)
Q Consensus 197 svK~r---~--------~~~~~~~~~l~~-G-~~~itih~ 223 (240)
.+++. + ++..++++.|++ | +|.|.+-+
T Consensus 220 g~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~ 259 (363)
T COG1902 220 GVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSE 259 (363)
T ss_pred EEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeec
Confidence 98888 2 245789999999 9 79988743
No 118
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=95.66 E-value=0.16 Score=45.96 Aligned_cols=130 Identities=13% Similarity=-0.020 Sum_probs=73.3
Q ss_pred ccccccCCCccccccCchhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEee-cCCHHHHHHHHHHHccC--CC
Q psy7344 65 PLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFC-GNDSKNLTEAAKLAEPH--CD 141 (240)
Q Consensus 65 ~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~-g~d~~~~~~aa~~le~~--~d 141 (240)
.+.+.+.|.. .+|..-......+|..+.....++|...+.+.+.++.. +.+.+. |-.++++..+.++++.+ +|
T Consensus 35 ~P~~inAM~t--~in~~LA~~a~~~G~~~i~hK~~~E~~~sfvrk~k~~~--L~v~~SvG~t~e~~~r~~~lv~a~~~~d 110 (321)
T TIGR01306 35 LPVVPANMQT--IIDEKLAEQLAENGYFYIMHRFDEESRIPFIKDMQERG--LFASISVGVKACEYEFVTQLAEEALTPE 110 (321)
T ss_pred CcEEeeccch--hhhHHHHHHHHHcCCEEEEecCCHHHHHHHHHhccccc--cEEEEEcCCCHHHHHHHHHHHhcCCCCC
Confidence 3445556643 34443223344444444433435554333333333322 233442 34677778888888876 57
Q ss_pred EEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEE
Q psy7344 142 GIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLT 220 (240)
Q Consensus 142 ~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~it 220 (240)
.|-+-.. |+ +-..+.+.++++++. .+.|..++--+ .+.+.++.|.+ |+|+|.
T Consensus 111 ~i~~D~a-------hg--------~s~~~~~~i~~i~~~-----------~p~~~vi~GnV-~t~e~a~~l~~aGad~I~ 163 (321)
T TIGR01306 111 YITIDIA-------HG--------HSNSVINMIKHIKTH-----------LPDSFVIAGNV-GTPEAVRELENAGADATK 163 (321)
T ss_pred EEEEeCc-------cC--------chHHHHHHHHHHHHh-----------CCCCEEEEecC-CCHHHHHHHHHcCcCEEE
Confidence 6544333 11 334555677777776 44454454444 37788999999 999999
Q ss_pred Ee---ccc
Q psy7344 221 EL---GKM 225 (240)
Q Consensus 221 ih---~R~ 225 (240)
++ ||+
T Consensus 164 V~~G~G~~ 171 (321)
T TIGR01306 164 VGIGPGKV 171 (321)
T ss_pred ECCCCCcc
Confidence 99 774
No 119
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=95.62 E-value=0.017 Score=52.46 Aligned_cols=86 Identities=17% Similarity=0.309 Sum_probs=58.1
Q ss_pred HHHHHHHHHHcc-CCCEEEecCCCchh-------hh--hcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIGCPQM-------VA--KRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~gCP~~-------~~--~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++.++|+.+.+ |+|||+|+.+.-.- .+ ..-.||..+-..--.+.+|++++++.+ +.+.||
T Consensus 149 ~~f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~v---------g~d~~v 219 (341)
T PF00724_consen 149 EDFAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAV---------GPDFPV 219 (341)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHH---------TGGGEE
T ss_pred HHHHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHh---------cCCceE
Confidence 456677777755 89999998764211 11 223466655444556789999999873 257899
Q ss_pred EEeeeh----------hcHHHHHHHHhC-CCCeEEE
Q psy7344 197 GCPQMV----------AKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 197 svK~r~----------~~~~~~~~~l~~-G~~~iti 221 (240)
.+|+.. +++.++++.+++ |+|.+.+
T Consensus 220 ~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~ 255 (341)
T PF00724_consen 220 GVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDV 255 (341)
T ss_dssp EEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEE
T ss_pred EEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccc
Confidence 999992 345677899999 9988753
No 120
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=95.58 E-value=0.18 Score=44.78 Aligned_cols=98 Identities=9% Similarity=-0.071 Sum_probs=61.9
Q ss_pred CCceeEEe-ecCCHHHHHHHHHHHcc-CCCEEEecCC-----CchhhhhcccccccccCCHHHHHHHHHHhhhccccccC
Q psy7344 114 MCGHSLMF-CGNDSKNLTEAAKLAEP-HCDGIDINIG-----CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAE 186 (240)
Q Consensus 114 ~~pvivqi-~g~d~~~~~~aa~~le~-~~d~Idin~g-----CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~ 186 (240)
..||++-+ .|+++....+.++.+++ |+.||.|-=. |.+. ++.|..-+-..+...+-+++++++-
T Consensus 78 ~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~----~~~~~~~l~s~ee~~~kI~Aa~~a~----- 148 (285)
T TIGR02320 78 TKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLF----GNDVAQPQASVEEFCGKIRAGKDAQ----- 148 (285)
T ss_pred CCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCcccccc----CCCCcccccCHHHHHHHHHHHHHhc-----
Confidence 57998887 34688888888888765 8999998332 3221 1222222334455445555555430
Q ss_pred CCCCCCCeeeEEeee-------hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 187 PHCDGNDINIGCPQM-------VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 187 ~~~~~~~~pvsvK~r-------~~~~~~~~~~l~~-G~~~itih~ 223 (240)
.+.+++|.+.+. ++++++-+++..+ |||.|.+++
T Consensus 149 ---~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~ 190 (285)
T TIGR02320 149 ---TTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHS 190 (285)
T ss_pred ---cCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 013566666533 4567888888999 999999995
No 121
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=95.48 E-value=0.1 Score=47.19 Aligned_cols=131 Identities=14% Similarity=0.029 Sum_probs=71.0
Q ss_pred CccccccCchhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHc-cCCCEEEecCCCch
Q psy7344 73 CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAE-PHCDGIDINIGCPQ 151 (240)
Q Consensus 73 ~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le-~~~d~Idin~gCP~ 151 (240)
++++++++.|++......++..|- .-.+.++.+...+ +.|++++..|.. .+ .+.++.++ .|+|+|++.-+..-
T Consensus 141 adalel~l~~~q~~~~~~~~~df~-~~~~~i~~l~~~~---~vPVivK~~g~g-~s-~~~a~~l~~~Gvd~I~vsG~GGt 214 (326)
T cd02811 141 ADALAIHLNPLQEAVQPEGDRDFR-GWLERIEELVKAL---SVPVIVKEVGFG-IS-RETAKRLADAGVKAIDVAGAGGT 214 (326)
T ss_pred CCcEEEeCcchHhhcCCCCCcCHH-HHHHHHHHHHHhc---CCCEEEEecCCC-CC-HHHHHHHHHcCCCEEEECCCCCC
Confidence 456666777666554433322211 0014455554433 579999985542 22 35556664 48999998543221
Q ss_pred hhhh-cccccc-------cccCCH-----HHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCe
Q psy7344 152 MVAK-RGHYGA-------YLQDDW-----PLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPL 218 (240)
Q Consensus 152 ~~~~-~~g~G~-------~l~~~p-----~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~ 218 (240)
..+. ..+.+. ....+| +.+.++ ++.+ .++||.+-..+.+-.+.++.+..||++
T Consensus 215 ~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~----~~~~----------~~ipIiasGGIr~~~dv~kal~lGAd~ 280 (326)
T cd02811 215 SWARVENYRAKDSDQRLAEYFADWGIPTAASLLEV----RSAL----------PDLPLIASGGIRNGLDIAKALALGADL 280 (326)
T ss_pred cccccccccccccccccccccccccccHHHHHHHH----HHHc----------CCCcEEEECCCCCHHHHHHHHHhCCCE
Confidence 1110 000110 111222 233333 2220 256888877788888999999889999
Q ss_pred EEEecc
Q psy7344 219 LTELGK 224 (240)
Q Consensus 219 itih~R 224 (240)
+.+ +|
T Consensus 281 V~i-~~ 285 (326)
T cd02811 281 VGM-AG 285 (326)
T ss_pred EEE-cH
Confidence 998 66
No 122
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=95.43 E-value=0.062 Score=49.33 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHcc-CCCEEEecCCCchhhh---------hcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 126 SKNLTEAAKLAEP-HCDGIDINIGCPQMVA---------KRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 126 ~~~~~~aa~~le~-~~d~Idin~gCP~~~~---------~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++++.++|+.+.+ |+|||+|+.+--.-.. ..-.||..+-..--.+.+|++++++.+ +.+ .
T Consensus 158 i~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~v---------g~~-~ 227 (362)
T PRK10605 158 VNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEW---------GAD-R 227 (362)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHc---------CCC-e
Confidence 3457778887765 8999999866211111 112366655444556689999999873 123 3
Q ss_pred eEEeee-------------hhc-HHHHHHHHhC-CCCeEEEe
Q psy7344 196 IGCPQM-------------VAK-RGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 196 vsvK~r-------------~~~-~~~~~~~l~~-G~~~itih 222 (240)
|.+|+. .++ +.++++.|++ |+|+|.+-
T Consensus 228 igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs 269 (362)
T PRK10605 228 IGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMS 269 (362)
T ss_pred EEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEec
Confidence 667663 133 5788999999 99999884
No 123
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=95.30 E-value=0.1 Score=43.52 Aligned_cols=84 Identities=20% Similarity=0.177 Sum_probs=55.2
Q ss_pred EEeecCCHHHHHHHHHHHcc-CCCEEEecC-CCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 119 LMFCGNDSKNLTEAAKLAEP-HCDGIDINI-GCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 119 vqi~g~d~~~~~~aa~~le~-~~d~Idin~-gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
++|...|+..+.+.++.+.+ |+|.|.+.. -+|.- ..+...++.++++.+ . .+.|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~--------~~~~~~~~~v~~i~~----~-----------~~~~v 59 (210)
T TIGR01163 3 PSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFV--------PNLTFGPPVLEALRK----Y-----------TDLPI 59 (210)
T ss_pred chhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCC--------CCcccCHHHHHHHHh----c-----------CCCcE
Confidence 35566788888999888876 799999962 11221 012234555555553 2 34465
Q ss_pred EEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 197 GCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 197 svK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.+=+.+.+..++++.+.+ |+|.|++|+..
T Consensus 60 ~v~lm~~~~~~~~~~~~~~gadgv~vh~~~ 89 (210)
T TIGR01163 60 DVHLMVENPDRYIEDFAEAGADIITVHPEA 89 (210)
T ss_pred EEEeeeCCHHHHHHHHHHcCCCEEEEccCC
Confidence 444444466788888889 99999999964
No 124
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=95.27 E-value=0.21 Score=43.27 Aligned_cols=102 Identities=12% Similarity=-0.038 Sum_probs=64.3
Q ss_pred CCceeEEee--cCCHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 114 MCGHSLMFC--GNDSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 114 ~~pvivqi~--g~d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
..|+++-+- .++++...+.++.+. .|+++|.|.=+...+. .+++|..-+-.++...+.+++++++. .
T Consensus 69 ~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~--~g~~~~~~~~~~ee~~~ki~aa~~a~--------~ 138 (243)
T cd00377 69 DLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKK--CGHHGGKVLVPIEEFVAKIKAARDAR--------D 138 (243)
T ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCcc--ccCCCCCeecCHHHHHHHHHHHHHHH--------h
Confidence 578888763 247777777777765 4899999954432221 12223333445555555555555541 1
Q ss_pred C-CCeeeEEee--------ehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 191 G-NDINIGCPQ--------MVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 191 ~-~~~pvsvK~--------r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+ .+++|.+.+ .++++++-++...+ |||.+.+|+-+
T Consensus 139 ~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~ 183 (243)
T cd00377 139 DLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK 183 (243)
T ss_pred ccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 1 245666652 25567888888999 99999999875
No 125
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=95.25 E-value=0.048 Score=46.88 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=54.0
Q ss_pred HHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHH
Q psy7344 131 EAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYG 209 (240)
Q Consensus 131 ~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~ 209 (240)
+-|+..|+ |+-+||-----|..+-..+ |-+-|.||..+++|..+ +.+||.+|.|+..+.+ +
T Consensus 31 EQA~IAE~aGAvAVMaLervPaDiR~aG--GVaRMaDp~~i~eim~a---------------VsIPVMAKvRIGH~~E-A 92 (296)
T COG0214 31 EQARIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIEEIMDA---------------VSIPVMAKVRIGHFVE-A 92 (296)
T ss_pred HHHHHHHhcCceeEeehhhCcHHHHhcc--CccccCCHHHHHHHHHh---------------cccceeeeeecchhHH-H
Confidence 44566665 7778886666687653333 45568999999999986 6889999999765443 6
Q ss_pred HHHhC-CCCeEEE
Q psy7344 210 AYLQD-DWPLLTE 221 (240)
Q Consensus 210 ~~l~~-G~~~iti 221 (240)
+.|+. |+|.|--
T Consensus 93 ~iLealgVD~IDE 105 (296)
T COG0214 93 QILEALGVDMIDE 105 (296)
T ss_pred HHHHHhCCCcccc
Confidence 78899 9999853
No 126
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=95.08 E-value=0.27 Score=40.00 Aligned_cols=105 Identities=7% Similarity=-0.062 Sum_probs=66.9
Q ss_pred hhhHHHhhhcccCCCCceeEEeecCC----HHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHH
Q psy7344 100 WPLLTELGFKTRSHMCGHSLMFCGND----SKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174 (240)
Q Consensus 100 ~eli~~i~~~~~~~~~pvivqi~g~d----~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv 174 (240)
.++++.+.........|+++.+..++ .++..+.++.+.+ |+|+|++-. |... ....+++.+.+.+
T Consensus 34 g~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~--~~~~--------~~~~~~~~~~~~~ 103 (201)
T cd00945 34 PGYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVI--NIGS--------LKEGDWEEVLEEI 103 (201)
T ss_pred HHHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEec--cHHH--------HhCCCHHHHHHHH
Confidence 46666655444321478899987776 7777777777655 899999832 2211 0111467777777
Q ss_pred HHhhhccccccCCCCCCCCeeeEEeee------hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 175 YSPNMVHFVIAEPHCDGNDINIGCPQM------VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 175 ~~~~~~~~~i~~~~~~~~~~pvsvK~r------~~~~~~~~~~l~~-G~~~itih~ 223 (240)
+.+.+.. +.++|+.++.. .+...++++.+++ |+++|....
T Consensus 104 ~~i~~~~---------~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~ 150 (201)
T cd00945 104 AAVVEAA---------DGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTST 150 (201)
T ss_pred HHHHHHh---------cCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCC
Confidence 7766650 13679888886 1234566667788 999998754
No 127
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=94.96 E-value=0.19 Score=43.85 Aligned_cols=106 Identities=19% Similarity=0.027 Sum_probs=65.8
Q ss_pred eeCChhhHHHhhhcccCCCCceeEEeecC---------------CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccc
Q psy7344 96 LQDDWPLLTELGFKTRSHMCGHSLMFCGN---------------DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHY 159 (240)
Q Consensus 96 l~~d~eli~~i~~~~~~~~~pvivqi~g~---------------d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~ 159 (240)
+..+++++.++.....+...++.+.+..+ ......++++.+++ +++.|-+.-= .+.|+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i------~~~G~ 179 (258)
T PRK01033 106 ALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSI------DRDGT 179 (258)
T ss_pred HhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEcc------CCCCC
Confidence 34567888887655432223344443322 23345677777755 7776655311 11222
Q ss_pred cccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 160 GAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 160 G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.. ..|++.++++.+. .++||.+-.-+.+..++.+.++. |++++.+ |+-
T Consensus 180 ~~--G~d~~~i~~~~~~---------------~~ipvIasGGv~s~eD~~~l~~~~GvdgViv-g~a 228 (258)
T PRK01033 180 MK--GYDLELLKSFRNA---------------LKIPLIALGGAGSLDDIVEAILNLGADAAAA-GSL 228 (258)
T ss_pred cC--CCCHHHHHHHHhh---------------CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE-cce
Confidence 22 3599999888775 45677777778888889999978 9999987 543
No 128
>PLN02826 dihydroorotate dehydrogenase
Probab=94.42 E-value=0.21 Score=46.72 Aligned_cols=137 Identities=18% Similarity=0.110 Sum_probs=78.6
Q ss_pred cccCCCccccccCchhhhhhhhcccceeeeCChhhHHHhhhccc----------CCCCceeEEeecC-CHHHHHHHHHHH
Q psy7344 68 IAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTR----------SHMCGHSLMFCGN-DSKNLTEAAKLA 136 (240)
Q Consensus 68 ~lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~----------~~~~pvivqi~g~-d~~~~~~aa~~l 136 (240)
.+.+++|++++|.-||..- | .+ .+. +.+.+.+++.+++ ....|++++|.-. +.+++.+.++.+
T Consensus 212 ~~~~~aDylelNiScPNtp---g-lr-~lq-~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a 285 (409)
T PLN02826 212 ALSQYADYLVINVSSPNTP---G-LR-KLQ-GRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVA 285 (409)
T ss_pred HHhhhCCEEEEECCCCCCC---C-cc-ccc-ChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHH
Confidence 3457899999999998831 1 11 121 2333333322221 1247999998532 445677888876
Q ss_pred cc-CCCEEE-ecC--CCchhh------hhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHH
Q psy7344 137 EP-HCDGID-INI--GCPQMV------AKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRG 206 (240)
Q Consensus 137 e~-~~d~Id-in~--gCP~~~------~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~ 206 (240)
++ |+|||= +|. +-|... ...+|.... .-.....+++..+.+.+ . .++||..=.-+.+..
T Consensus 286 ~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~--pl~~~sl~~v~~l~~~~--------~-~~ipIIgvGGI~sg~ 354 (409)
T PLN02826 286 LALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGK--PLFDLSTEVLREMYRLT--------R-GKIPLVGCGGVSSGE 354 (409)
T ss_pred HHcCCCEEEEEcccCcCccchhcccccccCCCcCCc--cccHHHHHHHHHHHHHh--------C-CCCcEEEECCCCCHH
Confidence 54 788864 452 222200 112222221 11123345666665541 0 157777777788888
Q ss_pred HHHHHHhCCCCeEEE
Q psy7344 207 HYGAYLQDDWPLLTE 221 (240)
Q Consensus 207 ~~~~~l~~G~~~iti 221 (240)
+..+.+..||+.+.+
T Consensus 355 Da~e~i~AGAs~VQv 369 (409)
T PLN02826 355 DAYKKIRAGASLVQL 369 (409)
T ss_pred HHHHHHHhCCCeeee
Confidence 999988889999988
No 129
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=94.32 E-value=0.33 Score=41.38 Aligned_cols=105 Identities=13% Similarity=0.018 Sum_probs=65.2
Q ss_pred eeeeCChhhHHHhhhcccCCCCceeEEeecC----------------CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhc
Q psy7344 94 AYLQDDWPLLTELGFKTRSHMCGHSLMFCGN----------------DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKR 156 (240)
Q Consensus 94 a~l~~d~eli~~i~~~~~~~~~pvivqi~g~----------------d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~ 156 (240)
+.+..+|+++.++.........++.+.+..+ ...+..+.++.+++ |+|.|-+.- . .+
T Consensus 104 ~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~-----i-~~ 177 (232)
T TIGR03572 104 TAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNS-----I-DR 177 (232)
T ss_pred hhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeC-----C-Cc
Confidence 3344568888887655422212233332221 12345677787765 788887742 1 11
Q ss_pred ccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEE
Q psy7344 157 GHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 157 ~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~iti 221 (240)
.+... ..+++.++++.+. .++||.+-..+.+..++.+.+.+ |++++.+
T Consensus 178 ~g~~~--g~~~~~~~~i~~~---------------~~ipvia~GGi~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 178 DGTMK--GYDLELIKTVSDA---------------VSIPVIALGGAGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred cCCcC--CCCHHHHHHHHhh---------------CCCCEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 12222 3588888887764 45688887778888888888888 9999988
No 130
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=94.27 E-value=0.29 Score=41.97 Aligned_cols=86 Identities=16% Similarity=0.110 Sum_probs=59.7
Q ss_pred eeEEeecCCHHHHHHHHHHHcc-CCCE--EEecCC--CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEP-HCDG--IDINIG--CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~-~~d~--Idin~g--CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
+.++|...|+..+.+.++.++. ++|. +|+==| .|+. .--++. ++++++..
T Consensus 9 i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~-----------~~G~~~----v~~lr~~~---------- 63 (228)
T PTZ00170 9 IAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNL-----------SFGPPV----VKSLRKHL---------- 63 (228)
T ss_pred EehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCc-----------CcCHHH----HHHHHhcC----------
Confidence 4557777899888888888866 6654 444222 2332 123444 44444440
Q ss_pred CCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 192 NDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 192 ~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
.++|+.+|+.+++...+++.+.+ |+|.+|+|+-+..
T Consensus 64 ~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH~ea~~ 100 (228)
T PTZ00170 64 PNTFLDCHLMVSNPEKWVDDFAKAGASQFTFHIEATE 100 (228)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHcCCCEEEEeccCCc
Confidence 27799999998889999999999 9999999998643
No 131
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=94.15 E-value=0.43 Score=40.99 Aligned_cols=76 Identities=14% Similarity=0.082 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhc
Q psy7344 126 SKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAK 204 (240)
Q Consensus 126 ~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~ 204 (240)
..+..+.++.+++ ++|.|.+.- .. +.+.. -..+++.++++.+. .++||.+-..+.+
T Consensus 148 ~~~~~~~~~~l~~~G~d~i~v~~-----i~-~~g~~--~g~~~~~i~~i~~~---------------~~~pvia~GGi~~ 204 (243)
T cd04731 148 GLDAVEWAKEVEELGAGEILLTS-----MD-RDGTK--KGYDLELIRAVSSA---------------VNIPVIASGGAGK 204 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEec-----cC-CCCCC--CCCCHHHHHHHHhh---------------CCCCEEEeCCCCC
Confidence 4456667777654 889888742 11 11222 23588888888764 4668888888888
Q ss_pred HHHHHHHHhC-CCCeEEEeccc
Q psy7344 205 RGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 205 ~~~~~~~l~~-G~~~itih~R~ 225 (240)
..++.+.++. |+|++.+ ||-
T Consensus 205 ~~di~~~l~~~g~dgv~v-g~a 225 (243)
T cd04731 205 PEHFVEAFEEGGADAALA-ASI 225 (243)
T ss_pred HHHHHHHHHhCCCCEEEE-eHH
Confidence 8899999999 9999988 654
No 132
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=94.09 E-value=0.48 Score=42.88 Aligned_cols=87 Identities=11% Similarity=0.123 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehh
Q psy7344 124 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVA 203 (240)
Q Consensus 124 ~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~ 203 (240)
++..+...+..+++.|+|+|.++.|.-...+.+.-.|... .+|.. ..+..++++ .++||.+-.-+.
T Consensus 143 GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~-~~~~l--~ai~ev~~a-----------~~~pVIadGGIr 208 (321)
T TIGR01306 143 GNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGT-GGWQL--AALRWCAKA-----------ARKPIIADGGIR 208 (321)
T ss_pred ecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCC-CchHH--HHHHHHHHh-----------cCCeEEEECCcC
Confidence 3344444455555669999999877222211222122221 35553 233333444 467888877788
Q ss_pred cHHHHHHHHhCCCCeEEEeccc
Q psy7344 204 KRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 204 ~~~~~~~~l~~G~~~itih~R~ 225 (240)
.-.+.+++|..|||++.+ ||.
T Consensus 209 ~~~Di~KALa~GAd~Vmi-g~~ 229 (321)
T TIGR01306 209 THGDIAKSIRFGASMVMI-GSL 229 (321)
T ss_pred cHHHHHHHHHcCCCEEee-chh
Confidence 888999999889999988 664
No 133
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=94.07 E-value=0.52 Score=41.94 Aligned_cols=100 Identities=6% Similarity=-0.108 Sum_probs=61.0
Q ss_pred CCceeEEeec--CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 114 MCGHSLMFCG--NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 114 ~~pvivqi~g--~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
+.||++-+-+ +++....+.++.+++ |+.||.|-=....+...|. .|..+ ...+...+=+++++++.
T Consensus 73 ~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~-~g~~l-v~~ee~~~kI~Aa~~a~--------- 141 (285)
T TIGR02317 73 DLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHL-PGKEL-VSREEMVDKIAAAVDAK--------- 141 (285)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCC-CCccc-cCHHHHHHHHHHHHHhc---------
Confidence 5899998832 568888888888866 8999998655322211111 12333 34444433344444431
Q ss_pred CCCeeeEEeee--------hhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 191 GNDINIGCPQM--------VAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 191 ~~~~pvsvK~r--------~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.+.++.+--| ++++++-+++..+ |||.|-+|+=+
T Consensus 142 -~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g~~ 184 (285)
T TIGR02317 142 -RDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPEALT 184 (285)
T ss_pred -cCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 2234555455 3466777788889 99999999833
No 134
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.00 E-value=0.42 Score=43.32 Aligned_cols=101 Identities=13% Similarity=0.131 Sum_probs=61.1
Q ss_pred hhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhh-hhcccccccccCCHHH--HHHHHHHh
Q psy7344 101 PLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMV-AKRGHYGAYLQDDWPL--LTNLVYSP 177 (240)
Q Consensus 101 eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~-~~~~g~G~~l~~~p~~--i~~iv~~~ 177 (240)
++|++++... .+.|+++ ++..+..++..+.+.|+|+|.++.| |-.. +.+...|.. ..+|.. +.++.++
T Consensus 129 e~I~~ir~~~--p~~~vi~----g~V~t~e~a~~l~~aGad~i~vg~~-~G~~~~t~~~~g~~-~~~w~l~ai~~~~~~- 199 (326)
T PRK05458 129 NMIQHIKKHL--PETFVIA----GNVGTPEAVRELENAGADATKVGIG-PGKVCITKIKTGFG-TGGWQLAALRWCAKA- 199 (326)
T ss_pred HHHHHHHhhC--CCCeEEE----EecCCHHHHHHHHHcCcCEEEECCC-CCcccccccccCCC-CCccHHHHHHHHHHH-
Confidence 4555554432 1245554 2334455555556679999998877 3321 222222222 467765 5555543
Q ss_pred hhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 178 NMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 178 ~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
.++||.+-..+.+..+.+++|..||+++.+ ||.
T Consensus 200 --------------~~ipVIAdGGI~~~~Di~KaLa~GA~aV~v-G~~ 232 (326)
T PRK05458 200 --------------ARKPIIADGGIRTHGDIAKSIRFGATMVMI-GSL 232 (326)
T ss_pred --------------cCCCEEEeCCCCCHHHHHHHHHhCCCEEEe-chh
Confidence 356787777788888999999889999988 543
No 135
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.98 E-value=0.32 Score=46.39 Aligned_cols=89 Identities=10% Similarity=0.042 Sum_probs=64.9
Q ss_pred EeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEe
Q psy7344 120 MFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCP 199 (240)
Q Consensus 120 qi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK 199 (240)
.|.++|..+...+..+++.|+|+|-+++|--+..+.++-+|.. ..+...+.++.++.++ .++||.+-
T Consensus 270 ~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~-~p~~~av~~~~~~~~~------------~~~~via~ 336 (479)
T PRK07807 270 PIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVG-RPQFSAVLECAAAARE------------LGAHVWAD 336 (479)
T ss_pred eEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCc-hhHHHHHHHHHHHHHh------------cCCcEEec
Confidence 4455777777777777788999999999943455555544443 3677777777776554 35678777
Q ss_pred eehhcHHHHHHHHhCCCCeEEE
Q psy7344 200 QMVAKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 200 ~r~~~~~~~~~~l~~G~~~iti 221 (240)
..+....+.+++|..||+++.+
T Consensus 337 ggi~~~~~~~~al~~ga~~v~~ 358 (479)
T PRK07807 337 GGVRHPRDVALALAAGASNVMI 358 (479)
T ss_pred CCCCCHHHHHHHHHcCCCeeec
Confidence 7777778888888889998877
No 136
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=93.94 E-value=0.63 Score=41.56 Aligned_cols=99 Identities=6% Similarity=-0.059 Sum_probs=61.1
Q ss_pred CCceeEEeec--CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccc-cccccCCHHHHHHHHHHhhhccccccCCCC
Q psy7344 114 MCGHSLMFCG--NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHY-GAYLQDDWPLLTNLVYSPNMVHFVIAEPHC 189 (240)
Q Consensus 114 ~~pvivqi~g--~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~-G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~ 189 (240)
+.||++-+-+ +++....+.++.+++ |+.||.|-=....+.. ++. |..+..--+.+.+|. +++++-
T Consensus 78 ~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~c--g~~~~~~lv~~ee~~~kI~-Aa~~a~-------- 146 (292)
T PRK11320 78 DLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRC--GHRPNKEIVSQEEMVDRIK-AAVDAR-------- 146 (292)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCcccc--CCCCCCcccCHHHHHHHHH-HHHHhc--------
Confidence 5799998843 488888888888876 8999988654321211 222 333333334444444 434431
Q ss_pred CCCCeeeEEeee--------hhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 190 DGNDINIGCPQM--------VAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 190 ~~~~~pvsvK~r--------~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.+.++.+--| +++.++-+++..+ |||.|-+|+=+
T Consensus 147 --~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~~ 189 (292)
T PRK11320 147 --TDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEAMT 189 (292)
T ss_pred --cCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 2334555555 3466777788889 99999999843
No 137
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=93.74 E-value=0.42 Score=41.86 Aligned_cols=81 Identities=6% Similarity=-0.110 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+. .|+++|-++-. +|....-.++.-.++++.+.+.. . .++||.+-+.
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~Gs----------tGE~~~ls~~Er~~l~~~~~~~~--------~-~~~~vi~gv~~~ 76 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGT----------TGEAPTLTDEERKEVIEAVVEAV--------A-GRVPVIAGVGAN 76 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCC----------CcccccCCHHHHHHHHHHHHHHh--------C-CCCeEEEecCCc
Confidence 6777888888764 48999987544 45555556666677887776651 1 2678888877
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEecc
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih~R 224 (240)
..+++++++.+++ |+|++.+..-
T Consensus 77 ~~~~~i~~a~~a~~~Gad~v~v~pP 101 (281)
T cd00408 77 STREAIELARHAEEAGADGVLVVPP 101 (281)
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCC
Confidence 4567899999999 9999999664
No 138
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=93.73 E-value=0.49 Score=43.60 Aligned_cols=104 Identities=7% Similarity=-0.068 Sum_probs=65.5
Q ss_pred CceeEEeec-CCHHHHHHHHHHHcc-CCCEEEecCCCchhhh---------------------hcccccc-------c--
Q psy7344 115 CGHSLMFCG-NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVA---------------------KRGHYGA-------Y-- 162 (240)
Q Consensus 115 ~pvivqi~g-~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~---------------------~~~g~G~-------~-- 162 (240)
.|...|+.- .|.+...+..++.+. |+.+|-+..=.|..-. ...+.+. .
T Consensus 133 ~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (367)
T TIGR02708 133 TPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAK 212 (367)
T ss_pred CceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccC
Confidence 478889864 677777888888876 7888777554442100 0000000 0
Q ss_pred ccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeE--EEecccccccCCCCCCCCCC
Q psy7344 163 LQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLL--TELGKMAMLVGILDNTGSWT 239 (240)
Q Consensus 163 l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~i--tih~R~~~~~~~~~~~adw~ 239 (240)
-.-+|+.++.+.+ . .++||++|.-. +.+.++.+.+ |+|+| +.||+ .|.+ .++++|+
T Consensus 213 ~~~~w~~i~~l~~----~-----------~~~PvivKGv~--~~eda~~a~~~Gvd~I~VS~HGG--rq~~--~~~a~~~ 271 (367)
T TIGR02708 213 QKLSPRDIEEIAG----Y-----------SGLPVYVKGPQ--CPEDADRALKAGASGIWVTNHGG--RQLD--GGPAAFD 271 (367)
T ss_pred CCCCHHHHHHHHH----h-----------cCCCEEEeCCC--CHHHHHHHHHcCcCEEEECCcCc--cCCC--CCCcHHH
Confidence 0245766655554 3 67899999643 3677888888 99976 77775 5653 5777775
No 139
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=93.56 E-value=0.55 Score=41.96 Aligned_cols=80 Identities=13% Similarity=0.027 Sum_probs=57.2
Q ss_pred CCceeEEeecCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
..|+..++.+.+++++.+.++.+ +.|++.|.++.|. +++...+.++++++.+ +
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~----------------~~~~d~~~v~~lr~~~---------g- 176 (316)
T cd03319 123 PLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGG----------------DLEDDIERIRAIREAA---------P- 176 (316)
T ss_pred CceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCC----------------ChhhHHHHHHHHHHhC---------C-
Confidence 45777788778888877766654 6689999999872 3344556777777662 1
Q ss_pred CeeeEEeee----hhcHHHHHHHHhC-CCCeE
Q psy7344 193 DINIGCPQM----VAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 193 ~~pvsvK~r----~~~~~~~~~~l~~-G~~~i 219 (240)
++++.++.+ .++..++++.+++ |+.+|
T Consensus 177 ~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~i 208 (316)
T cd03319 177 DARLRVDANQGWTPEEAVELLRELAELGVELI 208 (316)
T ss_pred CCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEE
Confidence 356666666 3467889999999 99888
No 140
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=93.56 E-value=0.58 Score=39.97 Aligned_cols=83 Identities=20% Similarity=0.199 Sum_probs=61.5
Q ss_pred ceeEEeecCCHHHHHHHHHHHcc-CCCEE--EecCC--CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 116 GHSLMFCGNDSKNLTEAAKLAEP-HCDGI--DINIG--CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 116 pvivqi~g~d~~~~~~aa~~le~-~~d~I--din~g--CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
.+..+|...|...+.+-++.+++ |+|.+ |+==| +|+- .--|+ ++++++..
T Consensus 5 ~iapSILsaD~~~l~~el~~~~~agad~iH~DVMDghFVPNi-----------TfGp~----~v~~l~~~---------- 59 (220)
T COG0036 5 KIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPNI-----------TFGPP----VVKALRKI---------- 59 (220)
T ss_pred eeeeehhhCCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCCc-----------ccCHH----HHHHHhhc----------
Confidence 46678888899988888888875 77653 33222 2332 12244 55555555
Q ss_pred CCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEecc
Q psy7344 191 GNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 191 ~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R 224 (240)
++.|+.|-+.+++...+.+.+.+ |+|.||+|.=
T Consensus 60 -t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E 93 (220)
T COG0036 60 -TDLPLDVHLMVENPDRYIEAFAKAGADIITFHAE 93 (220)
T ss_pred -CCCceEEEEecCCHHHHHHHHHHhCCCEEEEEec
Confidence 78999999999999999999999 9999999975
No 141
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=93.44 E-value=0.77 Score=38.02 Aligned_cols=87 Identities=22% Similarity=0.208 Sum_probs=54.8
Q ss_pred eeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
+.++|..-|..++.+.++.+.+ |++.|.+... .+.+-....-.++.++++.+. .+.|
T Consensus 2 ~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~-------d~~~~~~~~~~~~~~~~i~~~---------------~~~~ 59 (211)
T cd00429 2 IAPSILSADFANLGEELKRLEEAGADWIHIDVM-------DGHFVPNLTFGPPVVKALRKH---------------TDLP 59 (211)
T ss_pred ceeeeecCCHHHHHHHHHHHHHcCCCEEEEecc-------cCCCCCccccCHHHHHHHHhh---------------CCCc
Confidence 4456677899988888888765 7899888421 000000011234555555543 2235
Q ss_pred eEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 196 IGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 196 vsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+.+.+.+.+..++++.+.+ |+|++++|+..
T Consensus 60 ~~v~l~~~d~~~~~~~~~~~g~dgv~vh~~~ 90 (211)
T cd00429 60 LDVHLMVENPERYIEAFAKAGADIITFHAEA 90 (211)
T ss_pred EEEEeeeCCHHHHHHHHHHcCCCEEEECccc
Confidence 5555555676778888889 99999999974
No 142
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=93.44 E-value=0.79 Score=40.97 Aligned_cols=97 Identities=8% Similarity=-0.073 Sum_probs=57.5
Q ss_pred CCceeEEeec--CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccc-cccccCCHHHHHHHHHHhhhccccccCCCC
Q psy7344 114 MCGHSLMFCG--NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHY-GAYLQDDWPLLTNLVYSPNMVHFVIAEPHC 189 (240)
Q Consensus 114 ~~pvivqi~g--~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~-G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~ 189 (240)
+.||++-+-+ +++....+.++.+++ |+.||.|-=....+. .++. |..+..-.+.+++|..+ +++-
T Consensus 77 ~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~--cg~~~~k~lv~~ee~~~kI~Aa-~~A~-------- 145 (294)
T TIGR02319 77 DVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKR--CGHLEGKRLISTEEMTGKIEAA-VEAR-------- 145 (294)
T ss_pred CCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccc--cCCCCCccccCHHHHHHHHHHH-HHhc--------
Confidence 5799998832 355556777787765 899999865421111 1222 22343334444444444 3331
Q ss_pred CCCCeeeEEeee--------hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 190 DGNDINIGCPQM--------VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 190 ~~~~~pvsvK~r--------~~~~~~~~~~l~~-G~~~itih~ 223 (240)
.+.++.+--| ++.+++-+++..+ |||.|-+|+
T Consensus 146 --~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~ 186 (294)
T TIGR02319 146 --EDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFLEA 186 (294)
T ss_pred --cCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEecC
Confidence 1223444444 3567777888889 999999997
No 143
>KOG1606|consensus
Probab=93.43 E-value=0.15 Score=43.29 Aligned_cols=84 Identities=15% Similarity=0.170 Sum_probs=56.1
Q ss_pred HHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHH
Q psy7344 131 EAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYG 209 (240)
Q Consensus 131 ~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~ 209 (240)
+-++..|+ |+=+||.--.-|...-..+ |-+-|.||..|++|.++ +.+||.+|.|+..+++ +
T Consensus 32 eQA~iAE~aGACaVmalervPadiR~~G--gV~RMsDP~mIKei~~a---------------VsiPVMAk~RiGHFVE-A 93 (296)
T KOG1606|consen 32 EQARIAEEAGACAVMALERVPADIRAQG--GVARMSDPRMIKEIKNA---------------VSIPVMAKVRIGHFVE-A 93 (296)
T ss_pred HHHHHHHhcCcceEeeeccCCHhHHhcC--CeeecCCHHHHHHHHHh---------------ccchhhhhhhhhhhhH-H
Confidence 34556655 5445554444476543333 44558999999998876 6889999999876554 6
Q ss_pred HHHhC-CCCeEEEecccccccCCCCCCCCCCC
Q psy7344 210 AYLQD-DWPLLTELGKMAMLVGILDNTGSWTP 240 (240)
Q Consensus 210 ~~l~~-G~~~itih~R~~~~~~~~~~~adw~~ 240 (240)
+.||. |+|+|-- .+- -.+|||+.
T Consensus 94 QIlE~l~vDYiDE-----SEv---lt~AD~~h 117 (296)
T KOG1606|consen 94 QILEALGVDYIDE-----SEV---LTPADWDH 117 (296)
T ss_pred HHHHHhccCccch-----hhh---cccccccc
Confidence 88999 9999853 221 25788863
No 144
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=93.41 E-value=0.66 Score=42.67 Aligned_cols=94 Identities=14% Similarity=0.020 Sum_probs=62.4
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc---cCCHHHHHHHHH
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTNLVY 175 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l---~~~p~~i~~iv~ 175 (240)
.|+.|+.+.... ..|++++ ++.+..++.+.++.|+|+|.+..+ +| .++ ....+.+.++.+
T Consensus 224 ~w~~i~~ir~~~---~~pviiK----gV~~~eda~~a~~~G~d~I~VSnh--------GG--rqld~~~~~~~~L~ei~~ 286 (361)
T cd04736 224 NWQDLRWLRDLW---PHKLLVK----GIVTAEDAKRCIELGADGVILSNH--------GG--RQLDDAIAPIEALAEIVA 286 (361)
T ss_pred CHHHHHHHHHhC---CCCEEEe----cCCCHHHHHHHHHCCcCEEEECCC--------Cc--CCCcCCccHHHHHHHHHH
Confidence 477777776543 2577776 245555677777889999998432 22 223 123444444443
Q ss_pred HhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 176 SPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 176 ~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
. .++||.+-..+..-.+.+++|..||+++.+ ||-
T Consensus 287 ----~-----------~~~~vi~dGGIr~g~Dv~KALaLGA~aV~i-Gr~ 320 (361)
T cd04736 287 ----A-----------TYKPVLIDSGIRRGSDIVKALALGANAVLL-GRA 320 (361)
T ss_pred ----H-----------hCCeEEEeCCCCCHHHHHHHHHcCCCEEEE-CHH
Confidence 3 346888877788888999999999999988 664
No 145
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=93.14 E-value=0.66 Score=42.49 Aligned_cols=93 Identities=6% Similarity=-0.101 Sum_probs=58.2
Q ss_pred CceeEEeec-CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhh----ccc------------------ccc-------cc
Q psy7344 115 CGHSLMFCG-NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAK----RGH------------------YGA-------YL 163 (240)
Q Consensus 115 ~pvivqi~g-~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~----~~g------------------~G~-------~l 163 (240)
.|...|+.. .|.+...+..++.+. |+.+|-+..-.|..--. +.+ .+. .+
T Consensus 125 ~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (351)
T cd04737 125 GPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAA 204 (351)
T ss_pred CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhc
Confidence 468889864 577777888888866 78888777655331100 000 000 00
Q ss_pred --cCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEE--ecc
Q psy7344 164 --QDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTE--LGK 224 (240)
Q Consensus 164 --~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~iti--h~R 224 (240)
.-+|+.+ +++++. .++||.+|.- .+.+.++.+.+ |+|+|++ ||.
T Consensus 205 ~~~~~~~~l----~~lr~~-----------~~~PvivKgv--~~~~dA~~a~~~G~d~I~vsnhGG 253 (351)
T cd04737 205 KQKLSPADI----EFIAKI-----------SGLPVIVKGI--QSPEDADVAINAGADGIWVSNHGG 253 (351)
T ss_pred cCCCCHHHH----HHHHHH-----------hCCcEEEecC--CCHHHHHHHHHcCCCEEEEeCCCC
Confidence 0145544 444444 6789999963 34477788888 9999999 774
No 146
>PRK08005 epimerase; Validated
Probab=93.12 E-value=0.74 Score=39.15 Aligned_cols=85 Identities=9% Similarity=0.006 Sum_probs=59.4
Q ss_pred eeEEeecCCHHHHHHHHHHHcc-CCCE--EEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEP-HCDG--IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~-~~d~--Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
+..+|...|...+.+-++.+++ ++|. +|+==| ++--.+.--|+.+ +++++. ++
T Consensus 3 i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvMDG---------~FVPN~tfG~~~i----~~l~~~-----------t~ 58 (210)
T PRK08005 3 LHPSLASADPLRYAEALTALHDAPLGSLHLDIEDT---------SFINNITFGMKTI----QAVAQQ-----------TR 58 (210)
T ss_pred EEeehhhCCHHHHHHHHHHHHHCCCCEEEEeccCC---------CcCCccccCHHHH----HHHHhc-----------CC
Confidence 3457777898888888888866 6664 444222 2222222245544 444444 67
Q ss_pred eeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 194 INIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 194 ~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+|+.+-+.+.+...+.+.+.+ |++.||+|.-+
T Consensus 59 ~~~DvHLMv~~P~~~i~~~~~~gad~It~H~Ea 91 (210)
T PRK08005 59 HPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAES 91 (210)
T ss_pred CCeEEEeccCCHHHHHHHHHHhCCCEEEEcccC
Confidence 899999999999999999999 99999999874
No 147
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=93.01 E-value=0.51 Score=40.86 Aligned_cols=97 Identities=14% Similarity=0.073 Sum_probs=57.2
Q ss_pred CCceeEEee---cCCHHHHHHHHHHHcc-CCCEEEecCC-CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCC
Q psy7344 114 MCGHSLMFC---GNDSKNLTEAAKLAEP-HCDGIDINIG-CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPH 188 (240)
Q Consensus 114 ~~pvivqi~---g~d~~~~~~aa~~le~-~~d~Idin~g-CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~ 188 (240)
+.|+++-+- |+++....+.++.+++ |+.||.|.=. |- + .+..+. .++...+=+++++++.
T Consensus 69 ~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~-----~--~~~~l~-~~ee~~~kI~Aa~~a~------- 133 (238)
T PF13714_consen 69 SIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCG-----H--GGKQLV-SPEEMVAKIRAAVDAR------- 133 (238)
T ss_dssp SSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTT-----T--STT-B---HHHHHHHHHHHHHHH-------
T ss_pred cCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccC-----C--CCCcee-CHHHHHHHHHHHHHhc-------
Confidence 589999883 3449999999998876 8999999766 43 1 233455 4444433334444431
Q ss_pred CCCCCeeeEEeee--------hhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 189 CDGNDINIGCPQM--------VAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 189 ~~~~~~pvsvK~r--------~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
...++-|.+.+. ++++++-++++.+ |||.|.+|+-+.
T Consensus 134 -~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~~~ 179 (238)
T PF13714_consen 134 -RDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGLQS 179 (238)
T ss_dssp -SSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTSSS
T ss_pred -cCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCCCC
Confidence 012333444433 2455667777888 999999999653
No 148
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=92.84 E-value=1 Score=40.14 Aligned_cols=101 Identities=6% Similarity=-0.116 Sum_probs=58.6
Q ss_pred CCceeEEeec--CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 114 MCGHSLMFCG--NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 114 ~~pvivqi~g--~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
+.||++-+-+ +++....+.++.+++ |+.||.|.=..-.+...+...|..-+.+++...+=+++++++-
T Consensus 75 ~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~--------- 145 (290)
T TIGR02321 75 SIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAAR--------- 145 (290)
T ss_pred CCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhC---------
Confidence 5899998842 344467777777765 8999998655311111111012112345555444444444431
Q ss_pred CCCeeeEEeee---------hhcHHHHHHHHhC-CCCeEEEecc
Q psy7344 191 GNDINIGCPQM---------VAKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 191 ~~~~pvsvK~r---------~~~~~~~~~~l~~-G~~~itih~R 224 (240)
.+.++.+.-| ++++++-+++..+ |||.|-+|+.
T Consensus 146 -~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~ 188 (290)
T TIGR02321 146 -ADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSR 188 (290)
T ss_pred -CCCCEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 2234555445 2456777788889 9999999973
No 149
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=92.79 E-value=0.74 Score=41.29 Aligned_cols=80 Identities=11% Similarity=-0.047 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-+|-+ +|....-..+.-.++++.+.+.+ . -++||.+-.-
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~Gs----------tGE~~~Lt~eEr~~v~~~~~~~~--------~-grvpvi~Gv~~~ 87 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTMGT----------FGECATLTWEEKQAFVATVVETV--------A-GRVPVFVGATTL 87 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------cccchhCCHHHHHHHHHHHHHHh--------C-CCCCEEEEeccC
Confidence 667777777766 558999988554 45555556666667877766641 1 3678887776
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..+++++++..++ |+|++.+..
T Consensus 88 ~t~~ai~~a~~A~~~Gad~vlv~~ 111 (309)
T cd00952 88 NTRDTIARTRALLDLGADGTMLGR 111 (309)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECC
Confidence 5678899999999 999998853
No 150
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=92.74 E-value=0.9 Score=39.15 Aligned_cols=85 Identities=20% Similarity=0.124 Sum_probs=60.1
Q ss_pred eeEEeecCCHHHHHHHHHHHccCCCE--EEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCe
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEPHCDG--IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDI 194 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~~~d~--Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~ 194 (240)
+.++|...|...+.+-++.++.++|. +|+==| .+--.+.=-|+ +++++++. +++
T Consensus 5 I~pSil~ad~~~l~~el~~l~~g~d~lH~DiMDG---------~FVPN~tfg~~----~i~~ir~~-----------t~~ 60 (229)
T PRK09722 5 ISPSLMCMDLLKFKEQIEFLNSKADYFHIDIMDG---------HFVPNLTLSPF----FVSQVKKL-----------ASK 60 (229)
T ss_pred EEeehhhcCHHHHHHHHHHHHhCCCEEEEecccC---------ccCCCcccCHH----HHHHHHhc-----------CCC
Confidence 56678888988888888888777664 444222 11111222344 44445544 678
Q ss_pred eeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 195 NIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 195 pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
|+.+-+.+.+...+.+.+.+ |+|.||+|.-.
T Consensus 61 ~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea 92 (229)
T PRK09722 61 PLDVHLMVTDPQDYIDQLADAGADFITLHPET 92 (229)
T ss_pred CeEEEEEecCHHHHHHHHHHcCCCEEEECccC
Confidence 99999999999999999999 99999999874
No 151
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=92.60 E-value=1.1 Score=40.44 Aligned_cols=84 Identities=13% Similarity=0.126 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHHHccCCCEEEecCCCchh-hhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh
Q psy7344 124 NDSKNLTEAAKLAEPHCDGIDINIGCPQM-VAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV 202 (240)
Q Consensus 124 ~d~~~~~~aa~~le~~~d~Idin~gCP~~-~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~ 202 (240)
++..+...+.+.++.|+|+|.++.| |-. ...+.-.|. ...++..+.++.+.+.. .++||.+-..+
T Consensus 141 G~v~t~~~A~~l~~aGaD~I~vg~g-~G~~~~t~~~~g~-g~p~~~~i~~v~~~~~~------------~~vpVIA~GGI 206 (325)
T cd00381 141 GNVVTAEAARDLIDAGADGVKVGIG-PGSICTTRIVTGV-GVPQATAVADVAAAARD------------YGVPVIADGGI 206 (325)
T ss_pred CCCCCHHHHHHHHhcCCCEEEECCC-CCcCcccceeCCC-CCCHHHHHHHHHHHHhh------------cCCcEEecCCC
Confidence 5555555566666779999999655 211 011110111 13567777777776543 35677766667
Q ss_pred hcHHHHHHHHhCCCCeEEE
Q psy7344 203 AKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 203 ~~~~~~~~~l~~G~~~iti 221 (240)
.+..++++++..|++++.+
T Consensus 207 ~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 207 RTSGDIVKALAAGADAVML 225 (325)
T ss_pred CCHHHHHHHHHcCCCEEEe
Confidence 7778899999779999998
No 152
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=92.54 E-value=0.73 Score=43.92 Aligned_cols=90 Identities=10% Similarity=-0.000 Sum_probs=58.6
Q ss_pred CceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCe
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDI 194 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~ 194 (240)
.|+++ ++..+...+..+++.|+|+|.++.|-=...+.+.-+|.. ......+.++.+++++ .++
T Consensus 267 ~~vi~----g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g-~~~~~a~~~~~~~~~~------------~~~ 329 (475)
T TIGR01303 267 VPIVA----GNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVG-RPQFSAVLECAAEARK------------LGG 329 (475)
T ss_pred CeEEE----eccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCC-CchHHHHHHHHHHHHH------------cCC
Confidence 45554 444455555566667999999999822222333322221 2345555556555544 356
Q ss_pred eeEEeeehhcHHHHHHHHhCCCCeEEE
Q psy7344 195 NIGCPQMVAKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 195 pvsvK~r~~~~~~~~~~l~~G~~~iti 221 (240)
||.+-.++....+++++|..||+++++
T Consensus 330 ~viadGgi~~~~di~kala~GA~~vm~ 356 (475)
T TIGR01303 330 HVWADGGVRHPRDVALALAAGASNVMV 356 (475)
T ss_pred cEEEeCCCCCHHHHHHHHHcCCCEEee
Confidence 888888888889999999889999988
No 153
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=92.50 E-value=1.2 Score=39.51 Aligned_cols=103 Identities=9% Similarity=-0.058 Sum_probs=64.1
Q ss_pred CCCceeEEeec--CCHHHHHHHHHHHcc-CCCEEEecCCC-chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCC
Q psy7344 113 HMCGHSLMFCG--NDSKNLTEAAKLAEP-HCDGIDINIGC-PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPH 188 (240)
Q Consensus 113 ~~~pvivqi~g--~d~~~~~~aa~~le~-~~d~Idin~gC-P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~ 188 (240)
.+.||++-+-+ +++....+.++.+++ |+.||.|-=-- |-+ ..+.-|..+..-.+.+.+|..++...
T Consensus 77 ~~lPv~vD~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~--cgh~~gk~l~~~~e~v~rIkAa~~a~-------- 146 (289)
T COG2513 77 VDLPVLVDIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPKR--CGHLPGKELVSIDEMVDRIKAAVEAR-------- 146 (289)
T ss_pred cCCceEEeccCCCCcHHHHHHHHHHHHHcCcceeeeeecccchh--cCCCCCCCcCCHHHHHHHHHHHHHhc--------
Confidence 36899998843 468888888888766 77777654210 111 11113444544444555554444433
Q ss_pred CCCCCeeeEEeee--------hhcHHHHHHHHhC-CCCeEEEecccccc
Q psy7344 189 CDGNDINIGCPQM--------VAKRGHYGAYLQD-DWPLLTELGKMAML 228 (240)
Q Consensus 189 ~~~~~~pvsvK~r--------~~~~~~~~~~l~~-G~~~itih~R~~~~ 228 (240)
.+.++.+--| ++++++-+++..+ |+|.|-.++.+...
T Consensus 147 ---~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~al~~~e 192 (289)
T COG2513 147 ---RDPDFVIIARTDALLVEGLDDAIERAQAYVEAGADAIFPEALTDLE 192 (289)
T ss_pred ---cCCCeEEEeehHHHHhccHHHHHHHHHHHHHcCCcEEccccCCCHH
Confidence 3445555555 4678888889999 99999999988654
No 154
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=92.29 E-value=1.1 Score=40.97 Aligned_cols=97 Identities=15% Similarity=0.059 Sum_probs=60.9
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEe-cCCCchhhhhcccccccccCCHHHHHHHHHHh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDI-NIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSP 177 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idi-n~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~ 177 (240)
+|+.+..+.... ..|++++-. .++ .++.+..+.|+|+|.+ |.|--+ -.++ ...++.+.++.+++
T Consensus 209 ~~~~l~~lr~~~---~~PvivKgv-~~~---~dA~~a~~~G~d~I~vsnhGGr~------ld~~--~~~~~~l~~i~~a~ 273 (351)
T cd04737 209 SPADIEFIAKIS---GLPVIVKGI-QSP---EDADVAINAGADGIWVSNHGGRQ------LDGG--PASFDSLPEIAEAV 273 (351)
T ss_pred CHHHHHHHHHHh---CCcEEEecC-CCH---HHHHHHHHcCCCEEEEeCCCCcc------CCCC--chHHHHHHHHHHHh
Confidence 578887776543 369999821 233 3444445669999988 333100 0111 22345555555443
Q ss_pred hhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEecc
Q psy7344 178 NMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224 (240)
Q Consensus 178 ~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R 224 (240)
. .++||.+-.-+.+-.++++.+..||+++.+ ||
T Consensus 274 ~-------------~~i~vi~dGGIr~g~Di~kaLalGA~~V~i-Gr 306 (351)
T cd04737 274 N-------------HRVPIIFDSGVRRGEHVFKALASGADAVAV-GR 306 (351)
T ss_pred C-------------CCCeEEEECCCCCHHHHHHHHHcCCCEEEE-CH
Confidence 2 246787777788888999999889999988 77
No 155
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=92.14 E-value=1 Score=39.87 Aligned_cols=156 Identities=12% Similarity=-0.020 Sum_probs=82.7
Q ss_pred ccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCCCcccc-ccCchhhhhhhhcccceeeeCChhhHHHhhhc
Q psy7344 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGID-INIGCPQMVAKRGHYGAYLQDDWPLLTELGFK 109 (240)
Q Consensus 31 k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~d-l~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~ 109 (240)
++..|-+-+++|+.+.+ +. +..+.|+.-..+.-- |.+.-. ...| +..+.-+.+.+- ..+++..++..
T Consensus 43 ~~~~~v~R~~~~~~I~~----Ik-~~V~iPVIGi~K~~~--~~Ea~~L~eaG-vDiIDaT~r~rP----~~~~~~~iK~~ 110 (283)
T cd04727 43 RAAGGVARMADPKMIKE----IM-DAVSIPVMAKVRIGH--FVEAQILEALG-VDMIDESEVLTP----ADEEHHIDKHK 110 (283)
T ss_pred hhcCCeeecCCHHHHHH----HH-HhCCCCeEEeeehhH--HHHHHHHHHcC-CCEEeccCCCCc----HHHHHHHHHHH
Confidence 56678899999999554 45 356899874322110 000000 1222 111110000000 13455555443
Q ss_pred ccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCC--Cch-hhhh------------cccc--------cccccCC
Q psy7344 110 TRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIG--CPQ-MVAK------------RGHY--------GAYLQDD 166 (240)
Q Consensus 110 ~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~g--CP~-~~~~------------~~g~--------G~~l~~~ 166 (240)
. +.|+. .|..++.++.+..+.|+|.|-.-.. =+. ..+. -.|| ......+
T Consensus 111 ~---~~l~M-----AD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d 182 (283)
T cd04727 111 F---KVPFV-----CGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAP 182 (283)
T ss_pred c---CCcEE-----ccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCC
Confidence 2 34544 6778888898999899888865431 111 0000 0001 0012468
Q ss_pred HHHHHHHHHHhhhccccccCCCCCCCCeeeE--EeeehhcHHHHHHHHhCCCCeEEE
Q psy7344 167 WPLLTNLVYSPNMVHFVIAEPHCDGNDINIG--CPQMVAKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 167 p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvs--vK~r~~~~~~~~~~l~~G~~~iti 221 (240)
++.++++++. .++||. +-..+.+..+..+.++.|++++.+
T Consensus 183 ~elLk~l~~~---------------~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaV 224 (283)
T cd04727 183 YELVKETAKL---------------GRLPVVNFAAGGVATPADAALMMQLGADGVFV 224 (283)
T ss_pred HHHHHHHHHh---------------cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 8888888774 356775 555566666666666559999988
No 156
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=91.86 E-value=0.89 Score=41.52 Aligned_cols=101 Identities=11% Similarity=-0.037 Sum_probs=63.6
Q ss_pred CceeEEee-cCCHHHHHHHHHHHcc-CCCEEEecCCCchhhh----hcccc-------------------ccc-c--cCC
Q psy7344 115 CGHSLMFC-GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVA----KRGHY-------------------GAY-L--QDD 166 (240)
Q Consensus 115 ~pvivqi~-g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~----~~~g~-------------------G~~-l--~~~ 166 (240)
.|...|+. ..|...+.++.++.+. |+++|-+..-.|..-. .+.++ +.. + ..+
T Consensus 118 ~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (344)
T cd02922 118 QPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFID 197 (344)
T ss_pred CcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccC
Confidence 57889985 4688888888888876 8999988887773211 00000 000 0 011
Q ss_pred HHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEecccccc
Q psy7344 167 WPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAML 228 (240)
Q Consensus 167 p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~~~ 228 (240)
+....+.++++++. .++||.+|.- .+.+-++.+.+ |+|+|.+-+.-..|
T Consensus 198 ~~~~~~~i~~l~~~-----------~~~PvivKgv--~~~~dA~~a~~~G~d~I~vsnhgG~~ 247 (344)
T cd02922 198 PTLTWDDIKWLRKH-----------TKLPIVLKGV--QTVEDAVLAAEYGVDGIVLSNHGGRQ 247 (344)
T ss_pred CCCCHHHHHHHHHh-----------cCCcEEEEcC--CCHHHHHHHHHcCCCEEEEECCCccc
Confidence 12222334444444 6789999955 34677788888 99999997765544
No 157
>KOG1436|consensus
Probab=91.78 E-value=0.85 Score=41.10 Aligned_cols=102 Identities=9% Similarity=-0.017 Sum_probs=64.0
Q ss_pred ceeEEeecC--CHHHHHHHHHHHc---cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 116 GHSLMFCGN--DSKNLTEAAKLAE---PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 116 pvivqi~g~--d~~~~~~aa~~le---~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
++-|+++-+ +.+..++.++-+. +.+|...||.+||+.. |. ..++....+++++..+..+..-+..+
T Consensus 180 ~lGVnlgknk~s~d~~~dy~~gV~~~g~~adylviNvSsPNtp----Gl--r~lq~k~~L~~ll~~v~~a~~~~~~~--- 250 (398)
T KOG1436|consen 180 KLGVNLGKNKTSEDAILDYVEGVRVFGPFADYLVINVSSPNTP----GL--RSLQKKSDLRKLLTKVVQARDKLPLG--- 250 (398)
T ss_pred cceeeeccccCCcchHHHHHHHhhhcccccceEEEeccCCCCc----ch--hhhhhHHHHHHHHHHHHHHHhccccC---
Confidence 466777543 3444455555543 4589999999999962 22 22455555555555544432122222
Q ss_pred CCCeeeEEeeeh----hcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 191 GNDINIGCPQMV----AKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 191 ~~~~pvsvK~r~----~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
.+.|+.+|+-. .+..|++..+.+ .+|++.+-+-|-.
T Consensus 251 -~~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVs 291 (398)
T KOG1436|consen 251 -KKPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVS 291 (398)
T ss_pred -CCCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceee
Confidence 45699999993 356788888888 9999888766643
No 158
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=91.73 E-value=0.47 Score=40.00 Aligned_cols=85 Identities=21% Similarity=0.175 Sum_probs=58.6
Q ss_pred eeEEeecCCHHHHHHHHHHHcc-CCCE--EEecCC--CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEP-HCDG--IDINIG--CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~-~~d~--Idin~g--CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
+..+|...|...+.+.++.+++ |+|. +|+-=| +|+. .-.|+.++ ++++.
T Consensus 2 I~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~-----------~~g~~~i~----~i~~~----------- 55 (201)
T PF00834_consen 2 ISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNL-----------TFGPDIIK----AIRKI----------- 55 (201)
T ss_dssp EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB------------B-HHHHH----HHHTT-----------
T ss_pred eehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCcc-----------cCCHHHHH----HHhhc-----------
Confidence 4557777888999999898875 6663 454333 2332 22455544 44444
Q ss_pred CCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 192 NDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 192 ~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
+++|+.+-+.+.+...+.+.+.+ |++.|++|..+..
T Consensus 56 ~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E~~~ 92 (201)
T PF00834_consen 56 TDLPLDVHLMVENPERYIEEFAEAGADYITFHAEATE 92 (201)
T ss_dssp SSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGGGTT
T ss_pred CCCcEEEEeeeccHHHHHHHHHhcCCCEEEEcccchh
Confidence 78899999999888999999999 9999999998544
No 159
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=91.71 E-value=1.2 Score=37.85 Aligned_cols=111 Identities=14% Similarity=-0.083 Sum_probs=65.7
Q ss_pred ceeeeCChhhHHHhhhcccCCCCceeEEee-------cC---CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccc
Q psy7344 93 GAYLQDDWPLLTELGFKTRSHMCGHSLMFC-------GN---DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGA 161 (240)
Q Consensus 93 ga~l~~d~eli~~i~~~~~~~~~pvivqi~-------g~---d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~ 161 (240)
|+.+..+++++.++...... ...+.+.+. +. ...+..++++.+++ +++.|=+.-- .+.++.
T Consensus 103 g~~~l~~~~~l~ei~~~~~~-~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~------~~~g~~- 174 (233)
T PRK00748 103 GTAAVKNPELVKEACKKFPG-KIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDI------SRDGTL- 174 (233)
T ss_pred CchHHhCHHHHHHHHHHhCC-CceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeee------cCcCCc-
Confidence 34444567777776654421 122222221 11 13345677787766 6776544311 112222
Q ss_pred cccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEecccccc
Q psy7344 162 YLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAML 228 (240)
Q Consensus 162 ~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~~~ 228 (240)
...|++.++++.+. .++|+.+-..+.+..++.+.++. |++++.+ ||--.+
T Consensus 175 -~G~d~~~i~~l~~~---------------~~ipvia~GGi~~~~di~~~~~~g~~~gv~v-g~a~~~ 225 (233)
T PRK00748 175 -SGPNVEATRELAAA---------------VPIPVIASGGVSSLDDIKALKGLGAVEGVIV-GRALYE 225 (233)
T ss_pred -CCCCHHHHHHHHHh---------------CCCCEEEeCCCCCHHHHHHHHHcCCccEEEE-EHHHHc
Confidence 23699999888875 34677777777788888888888 6999988 776443
No 160
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=91.59 E-value=1.4 Score=42.26 Aligned_cols=105 Identities=10% Similarity=0.088 Sum_probs=62.7
Q ss_pred hhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcc--cccccccCCHHHHHHHHHHh
Q psy7344 100 WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRG--HYGAYLQDDWPLLTNLVYSP 177 (240)
Q Consensus 100 ~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~--g~G~~l~~~p~~i~~iv~~~ 177 (240)
|+++++++.... +.+++ .+|+.+..++...++.|+|+|-++.|--...+.+. +.|...+.....+.++.+
T Consensus 277 ~~~i~~ik~~~p--~~~vi----~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~-- 348 (505)
T PLN02274 277 LEMIKYIKKTYP--ELDVI----GGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAA-- 348 (505)
T ss_pred HHHHHHHHHhCC--CCcEE----EecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHH--
Confidence 466666654321 12333 25666666777777789999988755222222222 122222233333444433
Q ss_pred hhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 178 NMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 178 ~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
. .++||.+-..+.+..+++++|..||+++.+-.+.
T Consensus 349 --~-----------~~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~ 383 (505)
T PLN02274 349 --Q-----------HGVPVIADGGISNSGHIVKALTLGASTVMMGSFL 383 (505)
T ss_pred --h-----------cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhh
Confidence 2 4678888888888889999998899999885443
No 161
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=91.46 E-value=0.96 Score=37.92 Aligned_cols=87 Identities=18% Similarity=0.198 Sum_probs=53.3
Q ss_pred eeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
+.++|...|+..+.+.++.+.+ |++.|.+..- .+-+-.......+.++++. +. .+.+
T Consensus 6 ~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~-------d~~~~~~~~~~~~~~~~i~----~~-----------~~~~ 63 (220)
T PRK05581 6 IAPSILSADFARLGEEVKAVEAAGADWIHVDVM-------DGHFVPNLTIGPPVVEAIR----KV-----------TKLP 63 (220)
T ss_pred EEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCc-------cCCcCCCcCcCHHHHHHHH----hc-----------CCCc
Confidence 4556767788888888888765 7899888421 1100000001244444444 33 2234
Q ss_pred eEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 196 IGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 196 vsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+.+-+.+.+..++.+.+.+ |+|.+++|+..
T Consensus 64 ~~v~l~v~d~~~~i~~~~~~g~d~v~vh~~~ 94 (220)
T PRK05581 64 LDVHLMVENPDRYVPDFAKAGADIITFHVEA 94 (220)
T ss_pred EEEEeeeCCHHHHHHHHHHcCCCEEEEeecc
Confidence 5555555677777777778 99999999974
No 162
>PLN02411 12-oxophytodienoate reductase
Probab=91.44 E-value=0.63 Score=43.22 Aligned_cols=88 Identities=18% Similarity=0.171 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcc-CCCEEEecCCC---------chhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 126 SKNLTEAAKLAEP-HCDGIDINIGC---------PQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 126 ~~~~~~aa~~le~-~~d~Idin~gC---------P~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++++.++|++..+ |+|||+|..+- |..-...-.||..+-..--.+.+|++++++++ +.+ .
T Consensus 164 i~~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~v---------g~d-~ 233 (391)
T PLN02411 164 VEHYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAI---------GAD-R 233 (391)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHc---------CCC-e
Confidence 3456777777754 89999998662 21111123466666444556689999999883 123 4
Q ss_pred eEEeeeh-------------hcHHHHHHHHhC-------CCCeEEEec
Q psy7344 196 IGCPQMV-------------AKRGHYGAYLQD-------DWPLLTELG 223 (240)
Q Consensus 196 vsvK~r~-------------~~~~~~~~~l~~-------G~~~itih~ 223 (240)
|.+|+.- +...++++.|+. |+|+|.+-.
T Consensus 234 vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~ 281 (391)
T PLN02411 234 VGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQ 281 (391)
T ss_pred EEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecC
Confidence 7777762 113445565542 389988853
No 163
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=91.40 E-value=1.5 Score=37.09 Aligned_cols=105 Identities=17% Similarity=0.045 Sum_probs=63.0
Q ss_pred eeCChhhHHHhhhcccCCCCceeEEee---------c---CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhccccccc
Q psy7344 96 LQDDWPLLTELGFKTRSHMCGHSLMFC---------G---NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAY 162 (240)
Q Consensus 96 l~~d~eli~~i~~~~~~~~~pvivqi~---------g---~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~ 162 (240)
+..+++++.++......+ ++++.+- + ....+..+.++.+++ +++++=+. +. .+.|..
T Consensus 105 ~l~dp~~~~~i~~~~g~~--~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~-~~-----~~~g~~-- 174 (234)
T cd04732 105 AVKNPELVKELLKEYGGE--RIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYT-DI-----SRDGTL-- 174 (234)
T ss_pred HHhChHHHHHHHHHcCCc--eEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEE-ee-----cCCCcc--
Confidence 345678888776654321 2333321 1 123456677777765 78887653 11 111121
Q ss_pred ccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEecccc
Q psy7344 163 LQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMA 226 (240)
Q Consensus 163 l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~~ 226 (240)
-..+++.++++.+. +++|+.+-..+.+..++.+.++.|++++.+ ||--
T Consensus 175 ~g~~~~~i~~i~~~---------------~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v-g~~~ 222 (234)
T cd04732 175 SGPNFELYKELAAA---------------TGIPVIASGGVSSLDDIKALKELGVAGVIV-GKAL 222 (234)
T ss_pred CCCCHHHHHHHHHh---------------cCCCEEEecCCCCHHHHHHHHHCCCCEEEE-eHHH
Confidence 23688888888764 466888877777777766655459999988 6653
No 164
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=91.30 E-value=3.4 Score=36.71 Aligned_cols=149 Identities=15% Similarity=-0.007 Sum_probs=81.2
Q ss_pred ccCCCcccCCCchhHHHHHHHhhcccCCCceeeccccc--------ccCCCccccccCchhhhhhhhcccceeeeCChhh
Q psy7344 31 RGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFI--------AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL 102 (240)
Q Consensus 31 k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~--------lap~~~~~dl~~gC~~~i~~~g~~ga~l~~d~el 102 (240)
++..|-+-|++|..+.+| . +..+.|+.-+.+.- .+-.+|++|-..+ +.-..++
T Consensus 45 r~~ggv~R~~~p~~I~~I----~-~~V~iPVig~~kigh~~Ea~~L~~~GvDiIDeTe~--------------lrPade~ 105 (287)
T TIGR00343 45 RASGGVARMSDPKMIKEI----M-DAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEV--------------LTPADWT 105 (287)
T ss_pred HhcCCeeecCCHHHHHHH----H-HhCCCCEEEEeeccHHHHHHHHHHcCCCEEEccCC--------------CCcHHHH
Confidence 556788999999996655 4 35679987543311 1112333321110 0001344
Q ss_pred HHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecC--CCch-hhhhc----------c--c---------
Q psy7344 103 LTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINI--GCPQ-MVAKR----------G--H--------- 158 (240)
Q Consensus 103 i~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~--gCP~-~~~~~----------~--g--------- 158 (240)
+..++... ..|+. .|..++.++.+.++.|+|.|-.-. |=++ ..+.+ . +
T Consensus 106 ~~~~K~~f---~vpfm-----ad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~ 177 (287)
T TIGR00343 106 FHIDKKKF---KVPFV-----CGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAA 177 (287)
T ss_pred HHHHHHHc---CCCEE-----ccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhh
Confidence 44444332 34554 566777888888888888775431 1111 00000 0 0
Q ss_pred ccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeE--EeeehhcHHHHHHHHhCCCCeEEE
Q psy7344 159 YGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIG--CPQMVAKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 159 ~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvs--vK~r~~~~~~~~~~l~~G~~~iti 221 (240)
+...+..++++++++.+. .++||. +=..+.+..+.+..++.|++++.+
T Consensus 178 ~a~~~~~~~elLkei~~~---------------~~iPVV~fAiGGI~TPedAa~~melGAdGVaV 227 (287)
T TIGR00343 178 VAKELRVPVELLLEVLKL---------------GKLPVVNFAAGGVATPADAALMMQLGADGVFV 227 (287)
T ss_pred hhcccCCCHHHHHHHHHh---------------CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEE
Confidence 001123567777776653 356775 555566666777776669999988
No 165
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=91.13 E-value=1.8 Score=36.70 Aligned_cols=108 Identities=20% Similarity=0.056 Sum_probs=62.7
Q ss_pred eeCChhhHHHhhhcccCCCCceeEEeecC----------CHHHHHHHHHHHcc-CCCEEEec-CCCchhhhhcccccccc
Q psy7344 96 LQDDWPLLTELGFKTRSHMCGHSLMFCGN----------DSKNLTEAAKLAEP-HCDGIDIN-IGCPQMVAKRGHYGAYL 163 (240)
Q Consensus 96 l~~d~eli~~i~~~~~~~~~pvivqi~g~----------d~~~~~~aa~~le~-~~d~Idin-~gCP~~~~~~~g~G~~l 163 (240)
+..+++++.++..........+.+.+..+ ...+..+.++.+++ +++.+=+. .. +.++. .
T Consensus 104 ~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~-------~~g~~--~ 174 (230)
T TIGR00007 104 AVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDIS-------RDGTL--S 174 (230)
T ss_pred HhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeec-------CCCCc--C
Confidence 34567777777665432212222222211 12345667777755 78866542 21 11121 2
Q ss_pred cCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEecccccc
Q psy7344 164 QDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMAML 228 (240)
Q Consensus 164 ~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~~~~ 228 (240)
..|++.++++.+. .++|+.+-..+.+..++.+.++.|++++.+ ||.-..
T Consensus 175 g~~~~~i~~i~~~---------------~~ipvia~GGi~~~~di~~~~~~Gadgv~i-g~a~~~ 223 (230)
T TIGR00007 175 GPNFELTKELVKA---------------VNVPVIASGGVSSIDDLIALKKLGVYGVIV-GKALYE 223 (230)
T ss_pred CCCHHHHHHHHHh---------------CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE-eHHHHc
Confidence 3689988888765 456777777777777777654339999988 765443
No 166
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=91.11 E-value=1.8 Score=41.56 Aligned_cols=90 Identities=9% Similarity=0.038 Sum_probs=56.8
Q ss_pred EeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEe
Q psy7344 120 MFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCP 199 (240)
Q Consensus 120 qi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK 199 (240)
.|..++..+...+...++.|+|+|.++.|.-...+.+.-.|.. ......+.++.+.+++ .++|+.+-
T Consensus 284 ~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g-~p~~~ai~~~~~~~~~------------~~v~vIad 350 (495)
T PTZ00314 284 DIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVG-RPQASAVYHVARYARE------------RGVPCIAD 350 (495)
T ss_pred eEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCC-CChHHHHHHHHHHHhh------------cCCeEEec
Confidence 3344666666677777778999999876621111111111111 2344555566665444 35788886
Q ss_pred eehhcHHHHHHHHhCCCCeEEEe
Q psy7344 200 QMVAKRGHYGAYLQDDWPLLTEL 222 (240)
Q Consensus 200 ~r~~~~~~~~~~l~~G~~~itih 222 (240)
..+.+..++++++..||+++.+-
T Consensus 351 GGi~~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 351 GGIKNSGDICKALALGADCVMLG 373 (495)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEC
Confidence 66777789999998899999883
No 167
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=91.09 E-value=1.4 Score=38.16 Aligned_cols=76 Identities=13% Similarity=0.018 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhc
Q psy7344 126 SKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAK 204 (240)
Q Consensus 126 ~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~ 204 (240)
..+..+.++.+++ |++.|.+.-- .+.|+.. ..|++.++++.+. +++||.+-..+.+
T Consensus 154 ~~~~~~~~~~l~~~G~~~iivt~i------~~~g~~~--g~~~~~~~~i~~~---------------~~ipvia~GGi~s 210 (254)
T TIGR00735 154 GLDAVEWAKEVEKLGAGEILLTSM------DKDGTKS--GYDLELTKAVSEA---------------VKIPVIASGGAGK 210 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeCc------CcccCCC--CCCHHHHHHHHHh---------------CCCCEEEeCCCCC
Confidence 3456677777765 8999888531 1233322 3688888887764 4567887777778
Q ss_pred HHHHHHHHhC-CCCeEEEeccc
Q psy7344 205 RGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 205 ~~~~~~~l~~-G~~~itih~R~ 225 (240)
..++.+.+.. |++++.+ ||.
T Consensus 211 ~~di~~~~~~g~~dgv~~-g~a 231 (254)
T TIGR00735 211 PEHFYEAFTKGKADAALA-ASV 231 (254)
T ss_pred HHHHHHHHHcCCcceeeE-hHH
Confidence 8888888888 7999877 554
No 168
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=90.98 E-value=0.81 Score=39.53 Aligned_cols=85 Identities=18% Similarity=0.022 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHcc-CCCEEEecCCCchhhh-hcccc-----cccc--cCCHHHHHHHHHHhhhccccccCCCCCCCCe
Q psy7344 124 NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVA-KRGHY-----GAYL--QDDWPLLTNLVYSPNMVHFVIAEPHCDGNDI 194 (240)
Q Consensus 124 ~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~-~~~g~-----G~~l--~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~ 194 (240)
.|.+.+.+.++.+++ |+|.|++|. |..-. ..|.. -.+| ..+.+..-++++.+++. .++
T Consensus 11 P~~~~~~~~~~~l~~~Gad~iel~i--PfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~-----------~~~ 77 (242)
T cd04724 11 PDLETTLEILKALVEAGADIIELGI--PFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKK-----------NTI 77 (242)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc-----------CCC
Confidence 466788999998877 799999996 44211 11100 0000 12334555667776665 456
Q ss_pred eeEE--eee-hhc--HHHHHHHHhC-CCCeEEE
Q psy7344 195 NIGC--PQM-VAK--RGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 195 pvsv--K~r-~~~--~~~~~~~l~~-G~~~iti 221 (240)
|+.+ +.. +-. ..+|++.+.+ |++++++
T Consensus 78 pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giii 110 (242)
T cd04724 78 PIVLMGYYNPILQYGLERFLRDAKEAGVDGLII 110 (242)
T ss_pred CEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEE
Confidence 7543 322 112 4788999999 9999999
No 169
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=90.84 E-value=1.7 Score=41.55 Aligned_cols=84 Identities=14% Similarity=0.128 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHccCCCEEEecCCCchh-hhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh
Q psy7344 124 NDSKNLTEAAKLAEPHCDGIDINIGCPQM-VAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV 202 (240)
Q Consensus 124 ~d~~~~~~aa~~le~~~d~Idin~gCP~~-~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~ 202 (240)
++..+...+..+++.|+|+|.++.| |.. .+.+.-.|.. ..+.+.+.++.++.+. .++||.+-..+
T Consensus 275 g~v~t~e~a~~l~~aGad~i~vg~g-~gs~~~~r~~~~~g-~p~~~~~~~~~~~~~~------------~~~~viadGGi 340 (486)
T PRK05567 275 GNVATAEAARALIEAGADAVKVGIG-PGSICTTRIVAGVG-VPQITAIADAAEAAKK------------YGIPVIADGGI 340 (486)
T ss_pred eccCCHHHHHHHHHcCCCEEEECCC-CCccccceeecCCC-cCHHHHHHHHHHHhcc------------CCCeEEEcCCC
Confidence 5566666666777779999999877 431 1111111111 3466677777665443 35688887778
Q ss_pred hcHHHHHHHHhCCCCeEEE
Q psy7344 203 AKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 203 ~~~~~~~~~l~~G~~~iti 221 (240)
....+.++++..||+++.+
T Consensus 341 ~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 341 RYSGDIAKALAAGASAVML 359 (486)
T ss_pred CCHHHHHHHHHhCCCEEEE
Confidence 8888999999889999987
No 170
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=90.54 E-value=1.3 Score=38.67 Aligned_cols=96 Identities=11% Similarity=0.002 Sum_probs=57.4
Q ss_pred eeEEeec--CCHHHHHHHHHHHcc-CCCEEEecCCCchhhh-----hcccccc-cccCCHHHHHHHHHHhhhccccccCC
Q psy7344 117 HSLMFCG--NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVA-----KRGHYGA-YLQDDWPLLTNLVYSPNMVHFVIAEP 187 (240)
Q Consensus 117 vivqi~g--~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~-----~~~g~G~-~l~~~p~~i~~iv~~~~~~~~~i~~~ 187 (240)
++.=+.. .|.+.+.++++.+.+ |+|.|||+.==..+.+ .+....+ .-.-+.+.+-++++.+++..
T Consensus 12 li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~------ 85 (256)
T TIGR00262 12 FIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKH------ 85 (256)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcC------
Confidence 4444433 477788898888755 8999999762111111 1110000 00235566667777776531
Q ss_pred CCCCCCeeeEEeeehhcH------HHHHHHHhC-CCCeEEEec
Q psy7344 188 HCDGNDINIGCPQMVAKR------GHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 188 ~~~~~~~pvsvK~r~~~~------~~~~~~l~~-G~~~itih~ 223 (240)
.++|+. =+.+.+. .+|++.+.+ |++.+.+|-
T Consensus 86 ----~~~plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipD 123 (256)
T TIGR00262 86 ----PNIPIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVAD 123 (256)
T ss_pred ----CCCCEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECC
Confidence 356765 3333333 789999999 999999985
No 171
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=90.41 E-value=1.9 Score=38.56 Aligned_cols=80 Identities=9% Similarity=-0.045 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+. .|+++|-++-+ +|....-.++.=.++++.+.+.+ +-++||.+=.-
T Consensus 23 D~~a~~~lv~~li~~Gv~gi~~~Gt----------tGE~~~Ls~eEr~~v~~~~v~~~---------~grvpviaG~g~~ 83 (299)
T COG0329 23 DEEALRRLVEFLIAAGVDGLVVLGT----------TGESPTLTLEERKEVLEAVVEAV---------GGRVPVIAGVGSN 83 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCC----------CccchhcCHHHHHHHHHHHHHHH---------CCCCcEEEecCCC
Confidence 6677777777764 58899988544 45545556666667777777751 13678887766
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..+++++++..++ |+|++.+..
T Consensus 84 ~t~eai~lak~a~~~Gad~il~v~ 107 (299)
T COG0329 84 STAEAIELAKHAEKLGADGILVVP 107 (299)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEeC
Confidence 5678899999999 999998843
No 172
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=90.36 E-value=1.3 Score=37.91 Aligned_cols=84 Identities=15% Similarity=-0.003 Sum_probs=58.1
Q ss_pred EEeecCCHHHHHHHHHHHcc-CCCE--EEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 119 LMFCGNDSKNLTEAAKLAEP-HCDG--IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 119 vqi~g~d~~~~~~aa~~le~-~~d~--Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++|...|...+.+-.+.+++ ++|. +|+==|. +--.+.--|+.++.+.+. . +++|
T Consensus 4 pSil~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~---------Fvpn~tfg~~~i~~i~~~---~-----------~~~~ 60 (220)
T PRK08883 4 PSILSADFARLGEDVEKVLAAGADVVHFDVMDNH---------YVPNLTFGAPICKALRDY---G-----------ITAP 60 (220)
T ss_pred hhhhhcCHHHHHHHHHHHHHcCCCEEEEecccCc---------ccCccccCHHHHHHHHHh---C-----------CCCC
Confidence 46667788888888888866 6664 4443332 111122345555555432 1 3679
Q ss_pred eEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 196 IGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 196 vsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+.+-+.+++...+.+.+.+ |+|.||+|.-.
T Consensus 61 ~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea 91 (220)
T PRK08883 61 IDVHLMVKPVDRIIPDFAKAGASMITFHVEA 91 (220)
T ss_pred EEEEeccCCHHHHHHHHHHhCCCEEEEcccC
Confidence 9999999999999999999 99999999874
No 173
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=90.36 E-value=2.2 Score=36.62 Aligned_cols=86 Identities=13% Similarity=-0.054 Sum_probs=59.7
Q ss_pred eeEEeecCCHHHHHHHHHHHcc-CCCE--EEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEP-HCDG--IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~-~~d~--Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
+..+|...|...+.+-.+.+++ ++|. +|+==|. +--.+.--|+.++ ++++.. ++
T Consensus 6 i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~---------FVPN~tfg~~~i~----~lr~~~----------~~ 62 (223)
T PRK08745 6 IAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNH---------YVPNLTIGPMVCQ----ALRKHG----------IT 62 (223)
T ss_pred EEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCc---------cCCCcccCHHHHH----HHHhhC----------CC
Confidence 4567888899998888888876 6664 4443231 1111222455444 444320 36
Q ss_pred eeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 194 INIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 194 ~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+|+.+-+.+++...+.+.+.+ |++.||+|.-.
T Consensus 63 ~~~dvHLMv~~P~~~i~~~~~~gad~I~~H~Ea 95 (223)
T PRK08745 63 APIDVHLMVEPVDRIVPDFADAGATTISFHPEA 95 (223)
T ss_pred CCEEEEeccCCHHHHHHHHHHhCCCEEEEcccC
Confidence 799999999999999999999 99999999874
No 174
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=90.17 E-value=1.2 Score=38.44 Aligned_cols=67 Identities=13% Similarity=0.060 Sum_probs=43.5
Q ss_pred HHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHH
Q psy7344 132 AAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGA 210 (240)
Q Consensus 132 aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~ 210 (240)
+++.+++ ||..||- .|.|.. .|.. +.||..++.|++. .++||.+---+...-+.++
T Consensus 136 ~akrL~d~GcaavMP-lgsPIG------Sg~G-i~n~~~l~~i~~~---------------~~vPvIvDAGiG~pSdaa~ 192 (247)
T PF05690_consen 136 LAKRLEDAGCAAVMP-LGSPIG------SGRG-IQNPYNLRIIIER---------------ADVPVIVDAGIGTPSDAAQ 192 (247)
T ss_dssp HHHHHHHTT-SEBEE-BSSSTT------T----SSTHHHHHHHHHH---------------GSSSBEEES---SHHHHHH
T ss_pred HHHHHHHCCCCEEEe-cccccc------cCcC-CCCHHHHHHHHHh---------------cCCcEEEeCCCCCHHHHHH
Confidence 4555555 6777776 443533 3333 5899999888876 4668888777888888999
Q ss_pred HHhCCCCeEEE
Q psy7344 211 YLQDDWPLLTE 221 (240)
Q Consensus 211 ~l~~G~~~iti 221 (240)
+.|.|+|++-+
T Consensus 193 AMElG~daVLv 203 (247)
T PF05690_consen 193 AMELGADAVLV 203 (247)
T ss_dssp HHHTT-SEEEE
T ss_pred HHHcCCceeeh
Confidence 98889999876
No 175
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=90.04 E-value=0.94 Score=41.49 Aligned_cols=88 Identities=13% Similarity=0.110 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehh
Q psy7344 124 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVA 203 (240)
Q Consensus 124 ~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~ 203 (240)
+++.+..-+..+++.|+|+|-+++|.-+..+.+.-+|.. ......+.++.++.++ ..+||.+-.-+.
T Consensus 155 GNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG-~PQ~tAv~~~a~~a~~------------~~v~iIADGGi~ 221 (352)
T PF00478_consen 155 GNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVG-VPQLTAVYECAEAARD------------YGVPIIADGGIR 221 (352)
T ss_dssp EEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBS-CTHHHHHHHHHHHHHC------------TTSEEEEESS-S
T ss_pred cccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccC-CcHHHHHHHHHHHhhh------------ccCceeecCCcC
Confidence 555555555566677999999999954455555444432 2445566666665443 467998888888
Q ss_pred cHHHHHHHHhCCCCeEEEeccc
Q psy7344 204 KRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 204 ~~~~~~~~l~~G~~~itih~R~ 225 (240)
..-+++++|..|||++.+ |+.
T Consensus 222 ~sGDi~KAla~GAd~VMl-G~l 242 (352)
T PF00478_consen 222 TSGDIVKALAAGADAVML-GSL 242 (352)
T ss_dssp SHHHHHHHHHTT-SEEEE-STT
T ss_pred cccceeeeeeecccceee-chh
Confidence 889999999999999998 543
No 176
>PLN02535 glycolate oxidase
Probab=89.87 E-value=3.3 Score=38.13 Aligned_cols=95 Identities=17% Similarity=0.047 Sum_probs=59.3
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEe-cCCCchhhhhcccccccccCCH---HHHHHHH
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDI-NIGCPQMVAKRGHYGAYLQDDW---PLLTNLV 174 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idi-n~gCP~~~~~~~g~G~~l~~~p---~~i~~iv 174 (240)
+|+.++.+.... +.|++++=. -++ .++.+.++.|+|+|.+ |.|. ..+-..+ +.+.++.
T Consensus 211 tW~~i~~lr~~~---~~PvivKgV-~~~---~dA~~a~~~GvD~I~vsn~GG-----------r~~d~~~~t~~~L~ev~ 272 (364)
T PLN02535 211 SWKDIEWLRSIT---NLPILIKGV-LTR---EDAIKAVEVGVAGIIVSNHGA-----------RQLDYSPATISVLEEVV 272 (364)
T ss_pred CHHHHHHHHhcc---CCCEEEecC-CCH---HHHHHHHhcCCCEEEEeCCCc-----------CCCCCChHHHHHHHHHH
Confidence 588888876643 378888711 233 3455555679999987 3332 1121122 3333333
Q ss_pred HHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 175 YSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 175 ~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
+++. .++||.+-..+.+-.++++.|..||+++.+ ||-
T Consensus 273 ~av~-------------~~ipVi~dGGIr~g~Dv~KALalGA~aV~v-Gr~ 309 (364)
T PLN02535 273 QAVG-------------GRVPVLLDGGVRRGTDVFKALALGAQAVLV-GRP 309 (364)
T ss_pred HHHh-------------cCCCEEeeCCCCCHHHHHHHHHcCCCEEEE-CHH
Confidence 3321 246777766777888999999999999988 664
No 177
>PLN02417 dihydrodipicolinate synthase
Probab=89.87 E-value=2.2 Score=37.65 Aligned_cols=80 Identities=10% Similarity=-0.003 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-..+.-.++++.+.+.+ . .++||.+-+-
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~Gs----------tGE~~~ls~~Er~~~~~~~~~~~--------~-~~~pvi~gv~~~ 80 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVGGT----------TGEGQLMSWDEHIMLIGHTVNCF--------G-GKIKVIGNTGSN 80 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------CcchhhCCHHHHHHHHHHHHHHh--------C-CCCcEEEECCCc
Confidence 667777777766 458999987543 34444445555566776655541 1 2578877665
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..+++++++..++ |+|++.++.
T Consensus 81 ~t~~~i~~a~~a~~~Gadav~~~~ 104 (280)
T PLN02417 81 STREAIHATEQGFAVGMHAALHIN 104 (280)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcC
Confidence 5678899999999 999999864
No 178
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=89.76 E-value=1.7 Score=39.92 Aligned_cols=96 Identities=15% Similarity=0.071 Sum_probs=60.3
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc---cCCHHHHHHHHH
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTNLVY 175 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l---~~~p~~i~~iv~ 175 (240)
+|+-|+.+.... ..|++++= +-+..++.+..+.|+++|++.-. ||+ ++ ..-.+.+.++.+
T Consensus 213 ~w~~i~~~~~~~---~~pvivKg----v~~~~da~~~~~~G~~~i~vs~h--------GGr--~~d~~~~~~~~L~~i~~ 275 (356)
T PF01070_consen 213 TWDDIEWIRKQW---KLPVIVKG----VLSPEDAKRAVDAGVDGIDVSNH--------GGR--QLDWGPPTIDALPEIRA 275 (356)
T ss_dssp SHHHHHHHHHHC---SSEEEEEE----E-SHHHHHHHHHTT-SEEEEESG--------TGT--SSTTS-BHHHHHHHHHH
T ss_pred CHHHHHHHhccc---CCceEEEe----cccHHHHHHHHhcCCCEEEecCC--------Ccc--cCccccccccccHHHHh
Confidence 487788877654 47999872 13444566667779999998422 222 22 233445555555
Q ss_pred HhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 176 SPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 176 ~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
++. .++||.+-.-+.+-.+.++.+.-||+++.+ ||.
T Consensus 276 ~~~-------------~~~~i~~dgGir~g~Dv~kalaLGA~~v~i-gr~ 311 (356)
T PF01070_consen 276 AVG-------------DDIPIIADGGIRRGLDVAKALALGADAVGI-GRP 311 (356)
T ss_dssp HHT-------------TSSEEEEESS--SHHHHHHHHHTT-SEEEE-SHH
T ss_pred hhc-------------CCeeEEEeCCCCCHHHHHHHHHcCCCeEEE-ccH
Confidence 442 356888877788888999999999999988 664
No 179
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=89.75 E-value=1.7 Score=38.14 Aligned_cols=77 Identities=18% Similarity=0.163 Sum_probs=53.4
Q ss_pred CCHHHHHHHHH-HHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh
Q psy7344 124 NDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV 202 (240)
Q Consensus 124 ~d~~~~~~aa~-~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~ 202 (240)
.|.+...+.|+ ++++|+|.||||.+-+ .-..++.+..+++.+++. +++|+++-..-
T Consensus 22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~------------~~eE~~r~~~~v~~l~~~-----------~~~plsIDT~~ 78 (261)
T PRK07535 22 KDAAFIQKLALKQAEAGADYLDVNAGTA------------VEEEPETMEWLVETVQEV-----------VDVPLCIDSPN 78 (261)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC------------chhHHHHHHHHHHHHHHh-----------CCCCEEEeCCC
Confidence 57777666554 5577999999998811 113577888888888776 56777776660
Q ss_pred ----------------------h--cHHHHHHHHhC-CCCeEEEec
Q psy7344 203 ----------------------A--KRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 203 ----------------------~--~~~~~~~~l~~-G~~~itih~ 223 (240)
. ...++++.+.+ |+..+.+|.
T Consensus 79 ~~v~eaaL~~~~G~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 79 PAAIEAGLKVAKGPPLINSVSAEGEKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred HHHHHHHHHhCCCCCEEEeCCCCCccCHHHHHHHHHhCCCEEEEec
Confidence 0 12356666778 999998886
No 180
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=89.71 E-value=2.9 Score=38.06 Aligned_cols=85 Identities=9% Similarity=-0.013 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehh
Q psy7344 124 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVA 203 (240)
Q Consensus 124 ~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~ 203 (240)
+++.+.+.+..+++.|+|+|-++.|.-+..+.+.-.|.. ......+.++.+++.. .++||.+-.-+.
T Consensus 156 GNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg-~pqltAv~~~a~aa~~------------~~v~VIaDGGIr 222 (343)
T TIGR01305 156 GNVVTGEMVEELILSGADIVKVGIGPGSVCTTRTKTGVG-YPQLSAVIECADAAHG------------LKGHIISDGGCT 222 (343)
T ss_pred ecccCHHHHHHHHHcCCCEEEEcccCCCcccCceeCCCC-cCHHHHHHHHHHHhcc------------CCCeEEEcCCcC
Confidence 566666667677778999999998833333333333332 1455666666666543 356787777777
Q ss_pred cHHHHHHHHhCCCCeEEE
Q psy7344 204 KRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 204 ~~~~~~~~l~~G~~~iti 221 (240)
.--+++++|..|||++.+
T Consensus 223 ~~gDI~KALA~GAd~VMl 240 (343)
T TIGR01305 223 CPGDVAKAFGAGADFVML 240 (343)
T ss_pred chhHHHHHHHcCCCEEEE
Confidence 778999999889999988
No 181
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=89.67 E-value=2.4 Score=37.61 Aligned_cols=80 Identities=8% Similarity=-0.074 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-.++.-.++++.+.+.+ . .++||.+-+-
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~Gs----------tGE~~~Lt~eEr~~v~~~~~~~~--------~-g~~pvi~gv~~~ 84 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAAGG----------TGEFFSLTPAEYEQVVEIAVSTA--------K-GKVPVYTGVGGN 84 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCC----------CcCcccCCHHHHHHHHHHHHHHh--------C-CCCcEEEecCcc
Confidence 667777777776 458999987544 44445456666667777665541 1 2567766655
Q ss_pred hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 ~~~~~~~~~~l~~-G~~~itih~ 223 (240)
+.++++.++.+++ |+|++.+..
T Consensus 85 t~~ai~~a~~a~~~Gadav~~~p 107 (296)
T TIGR03249 85 TSDAIEIARLAEKAGADGYLLLP 107 (296)
T ss_pred HHHHHHHHHHHHHhCCCEEEECC
Confidence 5677889999999 999998854
No 182
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=89.62 E-value=2.5 Score=37.47 Aligned_cols=80 Identities=11% Similarity=0.140 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHH-ccC-CCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee-
Q psy7344 125 DSKNLTEAAKLA-EPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~-~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r- 201 (240)
|.+.+.+.++.+ +.| +++|-++-. +|....-.++.-.++++.+.+.+ . .++||.+-+.
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~Gs----------tGE~~~Lt~eEr~~~~~~~~~~~--------~-~~~pvi~gv~~ 79 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVGGS----------TGENFMLSTEEKKEIFRIAKDEA--------K-DQIALIAQVGS 79 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEECCc----------ccccccCCHHHHHHHHHHHHHHh--------C-CCCcEEEecCC
Confidence 666777777765 457 889877543 44444446666667777666641 1 2578877765
Q ss_pred --hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 --VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 --~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..+++++++..++ |+|++.+..
T Consensus 80 ~~t~~~i~la~~a~~~Gad~v~v~~ 104 (290)
T TIGR00683 80 VNLKEAVELGKYATELGYDCLSAVT 104 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 6678999999999 999999843
No 183
>PLN02979 glycolate oxidase
Probab=89.58 E-value=3.8 Score=37.75 Aligned_cols=96 Identities=15% Similarity=-0.021 Sum_probs=60.2
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCC---HHHHHHHHH
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDD---WPLLTNLVY 175 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~---p~~i~~iv~ 175 (240)
+|+-++.+.... +.|++++=. .+..++.+.++.|+|+|++.-+ +| .++-.- -+.+.++.+
T Consensus 211 tW~dl~wlr~~~---~~PvivKgV----~~~~dA~~a~~~Gvd~I~Vsnh--------GG--rqld~~p~t~~~L~ei~~ 273 (366)
T PLN02979 211 SWKDVQWLQTIT---KLPILVKGV----LTGEDARIAIQAGAAGIIVSNH--------GA--RQLDYVPATISALEEVVK 273 (366)
T ss_pred CHHHHHHHHhcc---CCCEEeecC----CCHHHHHHHHhcCCCEEEECCC--------Cc--CCCCCchhHHHHHHHHHH
Confidence 477777776543 479988732 2344566667779999987433 22 222111 223333333
Q ss_pred HhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 176 SPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 176 ~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
++. .++||.+-..+..-.+++++|..||+++.+ ||-
T Consensus 274 ~~~-------------~~~~Vi~dGGIr~G~Di~KALALGAdaV~i-Grp 309 (366)
T PLN02979 274 ATQ-------------GRIPVFLDGGVRRGTDVFKALALGASGIFI-GRP 309 (366)
T ss_pred HhC-------------CCCeEEEeCCcCcHHHHHHHHHcCCCEEEE-cHH
Confidence 321 246777777777888999999999999988 664
No 184
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=89.45 E-value=1.9 Score=41.49 Aligned_cols=99 Identities=15% Similarity=0.086 Sum_probs=65.1
Q ss_pred EEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEE
Q psy7344 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGC 198 (240)
Q Consensus 119 vqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsv 198 (240)
+.|.++++.+...+..+++.|+|+|-++.|--+..+.+.-.|.. ......+.++.++.++.... .+.++||.+
T Consensus 285 ~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g-~~~~~ai~~~~~a~~~~~~~------~g~~~~via 357 (502)
T PRK07107 285 VKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIG-RGQATALIEVAKARDEYFEE------TGVYIPICS 357 (502)
T ss_pred ceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCC-ccHHHHHHHHHHHHHHHHhh------cCCcceEEE
Confidence 45566777777777777788999999988843344444223332 24566677777765431000 013467777
Q ss_pred eeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 199 PQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 199 K~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
-.-+..--+++++|..|||++.+ ||.
T Consensus 358 dgGir~~gdi~KAla~GA~~vm~-G~~ 383 (502)
T PRK07107 358 DGGIVYDYHMTLALAMGADFIML-GRY 383 (502)
T ss_pred cCCCCchhHHHHHHHcCCCeeee-Chh
Confidence 76677778899999889999988 665
No 185
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=89.42 E-value=2.5 Score=37.70 Aligned_cols=80 Identities=10% Similarity=-0.014 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+. .|++||=+|-+ +|....-.++.-.++++.+.+.+ . .++||.+-+.
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~Gs----------tGE~~~Lt~eEr~~~~~~~~~~~--------~-~~~pvi~gv~~~ 86 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAGG----------TGEFFSLTPDEYSQVVRAAVETT--------A-GRVPVIAGAGGG 86 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcC----------CcCcccCCHHHHHHHHHHHHHHh--------C-CCCcEEEecCCC
Confidence 6677777777775 48999987544 44444445555556776665541 1 2567765554
Q ss_pred hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 ~~~~~~~~~~l~~-G~~~itih~ 223 (240)
+.+++++++.+++ |+|++.+..
T Consensus 87 t~~~i~~~~~a~~~Gadav~~~p 109 (303)
T PRK03620 87 TAQAIEYAQAAERAGADGILLLP 109 (303)
T ss_pred HHHHHHHHHHHHHhCCCEEEECC
Confidence 5677899999999 999998843
No 186
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=89.35 E-value=1.7 Score=38.55 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=52.6
Q ss_pred HHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHH
Q psy7344 131 EAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYG 209 (240)
Q Consensus 131 ~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~ 209 (240)
+-|+..|+ |+-+||-----|..+-..| |-+-+.+|+.|++|.++ +++||..|.|... ..-+
T Consensus 21 eqa~iae~aga~avm~le~~p~d~r~~g--gv~R~~~p~~I~~I~~~---------------V~iPVig~~kigh-~~Ea 82 (287)
T TIGR00343 21 EQAKIAEEAGAVAVMALERVPADIRASG--GVARMSDPKMIKEIMDA---------------VSIPVMAKVRIGH-FVEA 82 (287)
T ss_pred HHHHHHHHcCceEEEeeccCchhhHhcC--CeeecCCHHHHHHHHHh---------------CCCCEEEEeeccH-HHHH
Confidence 34566665 7777775555587653333 44558999999888876 6889999999654 5567
Q ss_pred HHHhC-CCCeEE
Q psy7344 210 AYLQD-DWPLLT 220 (240)
Q Consensus 210 ~~l~~-G~~~it 220 (240)
+.|++ |+|.|-
T Consensus 83 ~~L~~~GvDiID 94 (287)
T TIGR00343 83 QILEALGVDYID 94 (287)
T ss_pred HHHHHcCCCEEE
Confidence 88899 999995
No 187
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=89.33 E-value=1.4 Score=35.22 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=26.2
Q ss_pred ccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccC-CCceeec
Q psy7344 9 IETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSK-NGPLFMG 64 (240)
Q Consensus 9 ~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~-~~p~~vk 64 (240)
...+.++|.|.+|.+||.. +.+..+++.++. +.. +.|+.++
T Consensus 79 ~~~~~g~d~v~l~~~~~~~--------------~~~~~~~~~~i~-~~~~~~~v~~~ 120 (200)
T cd04722 79 AARAAGADGVEIHGAVGYL--------------AREDLELIRELR-EAVPDVKVVVK 120 (200)
T ss_pred HHHHcCCCEEEEeccCCcH--------------HHHHHHHHHHHH-HhcCCceEEEE
Confidence 3445678888888888764 566666677777 232 4555544
No 188
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=88.91 E-value=3 Score=39.39 Aligned_cols=84 Identities=14% Similarity=0.140 Sum_probs=53.7
Q ss_pred CCHHHHHHHHHHHccCCCEEEecCCCch-hhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh
Q psy7344 124 NDSKNLTEAAKLAEPHCDGIDINIGCPQ-MVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV 202 (240)
Q Consensus 124 ~d~~~~~~aa~~le~~~d~Idin~gCP~-~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~ 202 (240)
++..+...+...++.|+|+|.++.| |- ..+.+.-.|.. ......+.++.+.+++ .++||.+-..+
T Consensus 271 G~v~t~~~a~~l~~aGad~i~vg~g-~G~~~~t~~~~~~g-~p~~~~i~~~~~~~~~------------~~vpviadGGi 336 (450)
T TIGR01302 271 GNVATAEQAKALIDAGADGLRVGIG-PGSICTTRIVAGVG-VPQITAVYDVAEYAAQ------------SGIPVIADGGI 336 (450)
T ss_pred EeCCCHHHHHHHHHhCCCEEEECCC-CCcCCccceecCCC-ccHHHHHHHHHHHHhh------------cCCeEEEeCCC
Confidence 5555556666667779999998765 21 11111101110 1344566666665443 46788887778
Q ss_pred hcHHHHHHHHhCCCCeEEE
Q psy7344 203 AKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 203 ~~~~~~~~~l~~G~~~iti 221 (240)
....+.+++|..||+++.+
T Consensus 337 ~~~~di~kAla~GA~~V~~ 355 (450)
T TIGR01302 337 RYSGDIVKALAAGADAVML 355 (450)
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 8888999999889999987
No 189
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=88.90 E-value=12 Score=34.08 Aligned_cols=131 Identities=10% Similarity=0.035 Sum_probs=76.7
Q ss_pred eecccccccCCCccccccCchhhhhhhhcccceeee-CChhhHHHhhhcccCC-CCceeEEeecCCHHHHHHHHHHHcc-
Q psy7344 62 FMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ-DDWPLLTELGFKTRSH-MCGHSLMFCGNDSKNLTEAAKLAEP- 138 (240)
Q Consensus 62 ~vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~-~d~eli~~i~~~~~~~-~~pvivqi~g~d~~~~~~aa~~le~- 138 (240)
+.+.+.+-+.|...++..+- ..++.+|..+..-. .+.+--.+.+....++ ..-+.+.+ |-.++++..+.++++.
T Consensus 43 ~~~iPii~AnMdtv~~~~mA--~~la~~g~~~~iHk~~~~e~~~~~v~~~~~~~~~~~~vsv-G~~~~d~er~~~L~~a~ 119 (343)
T TIGR01305 43 YSGVPIIAANMDTVGTFEMA--AALSQHSIFTAIHKHYSVDEWKAFATNSSPDCLQNVAVSS-GSSDNDLEKMTSILEAV 119 (343)
T ss_pred eeCCceEecCCCcccCHHHH--HHHHHCCCeEEEeeCCCHHHHHHHHHhhcccccceEEEEe-ccCHHHHHHHHHHHhcC
Confidence 34556677899999988874 77888877666332 3333222222221111 12234433 3356667777777776
Q ss_pred -CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CC
Q psy7344 139 -HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DW 216 (240)
Q Consensus 139 -~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~ 216 (240)
++|.|-|-.. |+ +-+.+.+.++++++. ..-+..+|.-+.+ .+-++.|.+ ||
T Consensus 120 ~~~d~iviD~A-------hG--------hs~~~i~~ik~ir~~-----------~p~~~viaGNV~T-~e~a~~Li~aGA 172 (343)
T TIGR01305 120 PQLKFICLDVA-------NG--------YSEHFVEFVKLVREA-----------FPEHTIMAGNVVT-GEMVEELILSGA 172 (343)
T ss_pred CCCCEEEEECC-------CC--------cHHHHHHHHHHHHhh-----------CCCCeEEEecccC-HHHHHHHHHcCC
Confidence 4787655444 22 445666778888876 4445666665533 345666677 99
Q ss_pred CeEEEe
Q psy7344 217 PLLTEL 222 (240)
Q Consensus 217 ~~itih 222 (240)
|.|-+-
T Consensus 173 D~ikVg 178 (343)
T TIGR01305 173 DIVKVG 178 (343)
T ss_pred CEEEEc
Confidence 999763
No 190
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=88.84 E-value=3 Score=37.02 Aligned_cols=80 Identities=8% Similarity=-0.085 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+. .|++||-++-. +|....-..+.-.++++.+.+.+ . -++||.+-+-
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~Gs----------tGE~~~Ls~~Er~~l~~~~~~~~--------~-g~~pvi~gv~~~ 79 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGT----------SGEPGSLTLEERKQAIENAIDQI--------A-GRIPFAPGTGAL 79 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------CcccccCCHHHHHHHHHHHHHHh--------C-CCCcEEEECCcc
Confidence 6677777777764 48899877544 34444334444456666555431 1 2578876665
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..+++++++..++ |+|++.+..
T Consensus 80 ~t~~ai~~a~~A~~~Gad~v~v~p 103 (294)
T TIGR02313 80 NHDETLELTKFAEEAGADAAMVIV 103 (294)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcC
Confidence 5677899999999 999999855
No 191
>PLN02334 ribulose-phosphate 3-epimerase
Probab=88.72 E-value=3.3 Score=35.29 Aligned_cols=87 Identities=21% Similarity=0.218 Sum_probs=54.0
Q ss_pred ceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCe
Q psy7344 116 GHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDI 194 (240)
Q Consensus 116 pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~ 194 (240)
.+..++...|...+.+.++.+++ |++.|-+.. ..+.+...+.--|+.++++ ++. ++.
T Consensus 9 ~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~-------~d~~f~~~~~~g~~~~~~l----~~~-----------~~~ 66 (229)
T PLN02334 9 IIAPSILSADFANLAEEAKRVLDAGADWLHVDV-------MDGHFVPNLTIGPPVVKAL----RKH-----------TDA 66 (229)
T ss_pred eEEeehhhcCHHHHHHHHHHHHHcCCCEEEEec-------ccCCcCCccccCHHHHHHH----Hhc-----------CCC
Confidence 35556665676677777777655 677665521 1222212222234444444 443 455
Q ss_pred eeEEeeehhcHHHHHHHHhC-CCCeEEEecc
Q psy7344 195 NIGCPQMVAKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 195 pvsvK~r~~~~~~~~~~l~~-G~~~itih~R 224 (240)
++.+.+.+.+..++.+.+.+ |+|.|++|.-
T Consensus 67 ~~~vhlmv~~p~d~~~~~~~~gad~v~vH~~ 97 (229)
T PLN02334 67 PLDCHLMVTNPEDYVPDFAKAGASIFTFHIE 97 (229)
T ss_pred cEEEEeccCCHHHHHHHHHHcCCCEEEEeec
Confidence 77777777777788888888 9999999987
No 192
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=88.68 E-value=8.1 Score=33.85 Aligned_cols=145 Identities=14% Similarity=0.069 Sum_probs=75.6
Q ss_pred cccccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceeecccccccCC-C--ccccccCch-h
Q psy7344 8 RIETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPH-C--DGIDINIGC-P 83 (240)
Q Consensus 8 ~~~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~-~--~~~dl~~gC-~ 83 (240)
+.|.+.|+|.|++.++.... ....|+....+.+.+.++..... .+.++.+ +..+. . +.++....| .
T Consensus 27 ~~L~~~GVd~IEvG~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~----~~~~~~~~~~~l~~a~~~gv 96 (266)
T cd07944 27 RALAAAGIDYVEIGYRSSPE---KEFKGKSAFCDDEFLRRLLGDSK---GNTKIAV----MVDYGNDDIDLLEPASGSVV 96 (266)
T ss_pred HHHHHCCCCEEEeecCCCCc---cccCCCccCCCHHHHHHHHhhhc---cCCEEEE----EECCCCCCHHHHHHHhcCCc
Confidence 45777889999888755543 33455666666666554433221 1222221 11111 1 111111111 0
Q ss_pred hhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEee---cCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccc
Q psy7344 84 QMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFC---GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHY 159 (240)
Q Consensus 84 ~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi~---g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~ 159 (240)
..+.+ ++-..+.+.+.+.+...+.....+.+++. ..+++.+.+.++.+.+ +++.|-|-=- .
T Consensus 97 ~~iri-----~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT----------~ 161 (266)
T cd07944 97 DMIRV-----AFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDS----------F 161 (266)
T ss_pred CEEEE-----ecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecC----------C
Confidence 11110 11122344444444433333334555543 3578888899888865 7777755211 2
Q ss_pred cccccCCHHHHHHHHHHhhhc
Q psy7344 160 GAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 160 G~~l~~~p~~i~~iv~~~~~~ 180 (240)
| ...|+.+.++++.+++.
T Consensus 162 G---~~~P~~v~~lv~~l~~~ 179 (266)
T cd07944 162 G---SMYPEDIKRIISLLRSN 179 (266)
T ss_pred C---CCCHHHHHHHHHHHHHh
Confidence 3 36999999999999987
No 193
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=88.67 E-value=3.6 Score=38.19 Aligned_cols=92 Identities=11% Similarity=-0.058 Sum_probs=56.8
Q ss_pred CceeEEeecC-CHHHHHHHHHHHccC-CCEEEecCCCchhhhhcccccccc--------cCCHHHHHHHHHHhhhccccc
Q psy7344 115 CGHSLMFCGN-DSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYL--------QDDWPLLTNLVYSPNMVHFVI 184 (240)
Q Consensus 115 ~pvivqi~g~-d~~~~~~aa~~le~~-~d~Idin~gCP~~~~~~~g~G~~l--------~~~p~~i~~iv~~~~~~~~~i 184 (240)
.|+++++.+. +++ ++++.++.+ +|+|.+.-+ .+|+|.+- +.--..+.++.+++.+.
T Consensus 215 ~pV~vK~~~~~~~~---~~a~~~~~~g~D~I~VsG~-------~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~---- 280 (392)
T cd02808 215 KPIGVKLVAGHGEG---DIAAGVAAAGADFITIDGA-------EGGTGAAPLTFIDHVGLPTELGLARAHQALVKN---- 280 (392)
T ss_pred ceEEEEECCCCCHH---HHHHHHHHcCCCEEEEeCC-------CCCCCCCcccccccCCccHHHHHHHHHHHHHHc----
Confidence 6999998765 444 566777665 999998544 12222210 12223444555544331
Q ss_pred cCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 185 AEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 185 ~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
.. ..++||.+-..+.+-.++++++..|||++.+ ||.
T Consensus 281 ~~----~~~i~viasGGI~~g~Dv~kalaLGAd~V~i-g~~ 316 (392)
T cd02808 281 GL----RDRVSLIASGGLRTGADVAKALALGADAVGI-GTA 316 (392)
T ss_pred CC----CCCCeEEEECCCCCHHHHHHHHHcCCCeeee-chH
Confidence 00 0256777766677888999999889999988 554
No 194
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=88.40 E-value=3.2 Score=36.63 Aligned_cols=79 Identities=9% Similarity=-0.056 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+. .|++||-+|-+ +|....-..+.=.++++.+.+.+ . .++||.+-+-
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~Gs----------~GE~~~ls~~Er~~~~~~~~~~~--------~-~~~~vi~gv~~~ 80 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVVGT----------TGESPTLTHEEHEELIRAVVEAV--------N-GRVPVIAGTGSN 80 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCc----------CCccccCCHHHHHHHHHHHHHHh--------C-CCCcEEeecCCc
Confidence 6777778777764 58999988543 33334334444456666655541 1 2467766555
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih 222 (240)
+.++++.++.+++ |+|++.+.
T Consensus 81 ~~~~~i~~a~~a~~~G~d~v~~~ 103 (292)
T PRK03170 81 STAEAIELTKFAEKAGADGALVV 103 (292)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEC
Confidence 5678999999999 99999984
No 195
>PRK14057 epimerase; Provisional
Probab=88.22 E-value=3.3 Score=36.25 Aligned_cols=85 Identities=12% Similarity=-0.064 Sum_probs=61.2
Q ss_pred CceeEEeecCCHHHHHHHHHHHcc-CCCE--EEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLAEP-HCDG--IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~le~-~~d~--Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
.++.++|...|...+.+..+.+++ ++|. +|+==| .+--.+.--|+.++.+.
T Consensus 20 ~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG---------~FVPNitfGp~~i~~i~----------------- 73 (254)
T PRK14057 20 YPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDG---------QFCPQFTVGPWAVGQLP----------------- 73 (254)
T ss_pred CceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCC---------ccCCccccCHHHHHHhc-----------------
Confidence 578889999999999998888876 6664 444222 22111223455555552
Q ss_pred CCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 192 NDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 192 ~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.++|+.+-+.+.+...+.+.+.+ |+|.||+|.-.
T Consensus 74 ~~~p~DvHLMV~~P~~~i~~~~~aGad~It~H~Ea 108 (254)
T PRK14057 74 QTFIKDVHLMVADQWTAAQACVKAGAHCITLQAEG 108 (254)
T ss_pred cCCCeeEEeeeCCHHHHHHHHHHhCCCEEEEeecc
Confidence 23588888888899999999999 99999999874
No 196
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=88.17 E-value=3.1 Score=36.79 Aligned_cols=78 Identities=8% Similarity=-0.062 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+. .|++||-++-+ +|....-..+.-.++++.+.+.+ . .++||.+-+.
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~Gs----------tGE~~~Ls~eEr~~l~~~~~~~~--------~-~~~pvi~gv~~~ 79 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAGG----------TGEFFSLTPDEYAQVVRAAVEET--------A-GRVPVLAGAGYG 79 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcC----------CcCcccCCHHHHHHHHHHHHHHh--------C-CCCCEEEecCCC
Confidence 6677777777664 58999987544 34434334444456666555541 0 2567766555
Q ss_pred hhcHHHHHHHHhC-CCCeEEE
Q psy7344 202 VAKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 202 ~~~~~~~~~~l~~-G~~~iti 221 (240)
..+++++++.+++ |+|++.+
T Consensus 80 t~~~i~~a~~a~~~Gad~v~~ 100 (289)
T cd00951 80 TATAIAYAQAAEKAGADGILL 100 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEE
Confidence 5667889999999 9999988
No 197
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=88.15 E-value=2.8 Score=36.53 Aligned_cols=78 Identities=9% Similarity=-0.021 Sum_probs=51.2
Q ss_pred CCHHHHHHHHH-HHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh
Q psy7344 124 NDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV 202 (240)
Q Consensus 124 ~d~~~~~~aa~-~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~ 202 (240)
.|.+...+.++ ++++|+|.||||.+ |. .....+.+.+++..+++. +++|+|+-..-
T Consensus 23 ~~~d~~~~~A~~~~~~GAdiIDIG~~-~~-----------~~~~~ee~~r~v~~i~~~-----------~~~piSIDT~~ 79 (252)
T cd00740 23 EDYDEALDVARQQVEGGAQILDLNVD-YG-----------GLDGVSAMKWLLNLLATE-----------PTVPLMLDSTN 79 (252)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCC-CC-----------CCCHHHHHHHHHHHHHHh-----------cCCcEEeeCCc
Confidence 56676666544 55779999999986 32 123456677777666665 46677776651
Q ss_pred ----------------------hc----HHHHHHHHhC-CCCeEEEecc
Q psy7344 203 ----------------------AK----RGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 203 ----------------------~~----~~~~~~~l~~-G~~~itih~R 224 (240)
.. ..+++..+.+ |+..|.+|..
T Consensus 80 ~~v~e~aL~~~~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 80 WEVIEAGLKCCQGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred HHHHHHHHhhCCCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 01 2345566777 9999999974
No 198
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=88.12 E-value=3.9 Score=37.51 Aligned_cols=76 Identities=4% Similarity=-0.153 Sum_probs=47.3
Q ss_pred CCHHH-HHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee
Q psy7344 124 NDSKN-LTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM 201 (240)
Q Consensus 124 ~d~~~-~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r 201 (240)
.+.++ +.++++.|++ ++|.|++..+ .. ..+ ..+ . ..+.+.+++. +++||.+-.+
T Consensus 245 ~~~~e~~~~~~~~L~~~giD~i~vs~~--~~---~~~--~~~--~----~~~~~~ik~~-----------~~~pv~~~G~ 300 (362)
T PRK10605 245 PNEEADALYLIEQLGKRGIAYLHMSEP--DW---AGG--EPY--S----DAFREKVRAR-----------FHGVIIGAGA 300 (362)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEeccc--cc---cCC--ccc--c----HHHHHHHHHH-----------CCCCEEEeCC
Confidence 35666 6888999876 7899998654 11 111 111 1 2333455555 5668887767
Q ss_pred hhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 202 VAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 202 ~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+ +.....+.+++ .+|.|.+ ||-
T Consensus 301 ~-~~~~ae~~i~~G~~D~V~~-gR~ 323 (362)
T PRK10605 301 Y-TAEKAETLIGKGLIDAVAF-GRD 323 (362)
T ss_pred C-CHHHHHHHHHcCCCCEEEE-CHH
Confidence 5 55555556666 6999998 774
No 199
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=88.11 E-value=5.8 Score=34.01 Aligned_cols=108 Identities=10% Similarity=-0.037 Sum_probs=72.5
Q ss_pred eCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHH
Q psy7344 97 QDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYS 176 (240)
Q Consensus 97 ~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~ 176 (240)
..|+++++.++... ..|+-|+ +-+|+.+..+. +.|+|-|||+-- ..-...| . .=+-+.+-++.+.
T Consensus 47 Aadp~LV~~~~~~s---~lPICVS--aVep~~f~~aV---~AGAdliEIGNf---DsFY~qG--r--~f~a~eVL~Lt~~ 111 (242)
T PF04481_consen 47 AADPELVKLAKSLS---NLPICVS--AVEPELFVAAV---KAGADLIEIGNF---DSFYAQG--R--RFSAEEVLALTRE 111 (242)
T ss_pred cCCHHHHHHHHHhC---CCCeEee--cCCHHHHHHHH---HhCCCEEEecch---HHHHhcC--C--eecHHHHHHHHHH
Confidence 67899998765432 4687665 35777666554 468999998532 1111121 1 1255677788888
Q ss_pred hhhccccccCCCCCCCCeeeEEeee----hhcHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 177 PNMVHFVIAEPHCDGNDINIGCPQM----VAKRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 177 ~~~~~~~i~~~~~~~~~~pvsvK~r----~~~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
.|+-. .++|++|-+- ++.-++++..|++ |+|.|.--|-|....
T Consensus 112 tR~LL----------P~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p 159 (242)
T PF04481_consen 112 TRSLL----------PDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKP 159 (242)
T ss_pred HHHhC----------CCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCC
Confidence 88874 3456666555 4667899999999 999998888777654
No 200
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=88.09 E-value=2.3 Score=37.78 Aligned_cols=82 Identities=10% Similarity=-0.078 Sum_probs=50.4
Q ss_pred CHHHHHH-HHHHHccCCCEEEecCCCchhhhhcccccccccCCHHH---HHHHHHHhhhccccccCCCCCCCCeeeEEee
Q psy7344 125 DSKNLTE-AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPL---LTNLVYSPNMVHFVIAEPHCDGNDINIGCPQ 200 (240)
Q Consensus 125 d~~~~~~-aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~---i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~ 200 (240)
+++...+ +.+++++|+|.||||.-- .+-|+......+. +..+++.+++. .++|+|+-+
T Consensus 36 ~~~~a~~~a~~~~~~GAdIIDIGgeS-------TrPg~~~v~~eeE~~Rv~pvI~~l~~~-----------~~~~ISIDT 97 (282)
T PRK11613 36 SLIDAVKHANLMINAGATIIDVGGES-------TRPGAAEVSVEEELDRVIPVVEAIAQR-----------FEVWISVDT 97 (282)
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCC-------CCCCCCCCCHHHHHHHHHHHHHHHHhc-----------CCCeEEEEC
Confidence 5665554 445567899999998441 1112322333344 44456666654 467898887
Q ss_pred eh---------------hc-----HHHHHHHHhC-CCCeEEEecc
Q psy7344 201 MV---------------AK-----RGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 201 r~---------------~~-----~~~~~~~l~~-G~~~itih~R 224 (240)
.- .+ ..++++.+.+ |+..|.+|.|
T Consensus 98 ~~~~va~~AL~~GadiINDI~g~~d~~~~~~~a~~~~~vVlmh~~ 142 (282)
T PRK11613 98 SKPEVIRESAKAGAHIINDIRSLSEPGALEAAAETGLPVCLMHMQ 142 (282)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCC
Confidence 71 11 1355667778 9999999976
No 201
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=88.02 E-value=3.7 Score=36.13 Aligned_cols=80 Identities=9% Similarity=-0.051 Sum_probs=53.0
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++||-++-. +|....-..+.-.++++.+.+.+ . -++||.+-+-
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~~Gs----------tGE~~~Ls~~Er~~~~~~~~~~~--------~-~~~~vi~gv~~~ 77 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVVVGT----------TGESPTLSHEEHKKVIEFVVDLV--------N-GRVPVIAGTGSN 77 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcc----------CcccccCCHHHHHHHHHHHHHHh--------C-CCCeEEEeCCCc
Confidence 667777777775 558999987433 33334334444456666555531 1 2567776665
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..++++.++.+++ |+|++.+..
T Consensus 78 s~~~~i~~a~~a~~~Gad~v~v~p 101 (285)
T TIGR00674 78 ATEEAISLTKFAEDVGADGFLVVT 101 (285)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcC
Confidence 5678889999999 999999854
No 202
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=88.00 E-value=3.8 Score=36.07 Aligned_cols=80 Identities=6% Similarity=-0.052 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEe-ee
Q psy7344 124 NDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCP-QM 201 (240)
Q Consensus 124 ~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK-~r 201 (240)
-|.+.+.+.++.+ +.|++||-++-+ +|....-..+.-.++++.+.+.. .++.+.+- ..
T Consensus 17 iD~~~~~~li~~l~~~Gv~Gl~~~Gs----------tGE~~~Lt~eEr~~l~~~~~~~~----------~~vi~gvg~~~ 76 (279)
T cd00953 17 IDKEKFKKHCENLISKGIDYVFVAGT----------TGLGPSLSFQEKLELLKAYSDIT----------DKVIFQVGSLN 76 (279)
T ss_pred cCHHHHHHHHHHHHHcCCcEEEEccc----------CCCcccCCHHHHHHHHHHHHHHc----------CCEEEEeCcCC
Confidence 3778888888876 458999988544 45555556666667777666651 12222222 12
Q ss_pred hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 ~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..+++++++.+++ |+|++.+..
T Consensus 77 ~~~ai~~a~~a~~~Gad~v~v~~ 99 (279)
T cd00953 77 LEESIELARAAKSFGIYAIASLP 99 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeC
Confidence 6788999999999 999999844
No 203
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=87.98 E-value=5.5 Score=36.78 Aligned_cols=96 Identities=15% Similarity=-0.006 Sum_probs=60.8
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccC---CHHHHHHHHH
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQD---DWPLLTNLVY 175 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~---~p~~i~~iv~ 175 (240)
+|+-|..+.... +.|++++=. -+..++.+.++.|+|+|++.-. + |.++-. -.+.+.++++
T Consensus 212 tW~di~wlr~~~---~~PiivKgV----~~~~dA~~a~~~Gvd~I~Vsnh--------G--Grqld~~~~t~~~L~ei~~ 274 (367)
T PLN02493 212 SWKDVQWLQTIT---KLPILVKGV----LTGEDARIAIQAGAAGIIVSNH--------G--ARQLDYVPATISALEEVVK 274 (367)
T ss_pred CHHHHHHHHhcc---CCCEEeecC----CCHHHHHHHHHcCCCEEEECCC--------C--CCCCCCchhHHHHHHHHHH
Confidence 588777776543 478988722 2344566667779999997433 2 122211 1233333433
Q ss_pred HhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 176 SPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 176 ~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
++. .++||.+-.-+.+-.+++++|..||+++-+ ||.
T Consensus 275 av~-------------~~~~vi~dGGIr~G~Dv~KALALGA~aV~i-Gr~ 310 (367)
T PLN02493 275 ATQ-------------GRIPVFLDGGVRRGTDVFKALALGASGIFI-GRP 310 (367)
T ss_pred HhC-------------CCCeEEEeCCcCcHHHHHHHHHcCCCEEEE-cHH
Confidence 321 246777777777888999999889999988 764
No 204
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=87.97 E-value=4.6 Score=36.55 Aligned_cols=121 Identities=10% Similarity=-0.103 Sum_probs=66.6
Q ss_pred ccccCCCccccc-cCchhhhhhhhcccceee--eCChhhHHHhhhcccC--CCCceeEEeecC--CHHHHHHHHHHH-cc
Q psy7344 67 FIAEPHCDGIDI-NIGCPQMVAKRGHYGAYL--QDDWPLLTELGFKTRS--HMCGHSLMFCGN--DSKNLTEAAKLA-EP 138 (240)
Q Consensus 67 ~~lap~~~~~dl-~~gC~~~i~~~g~~ga~l--~~d~eli~~i~~~~~~--~~~pvivqi~g~--d~~~~~~aa~~l-e~ 138 (240)
.+.+||....+- .+ ...++..|+.|..- ...++.+++...+++. .+.|+-|+|... ++ ...+..+.+ +.
T Consensus 5 IiqgpM~~vs~~~~L--aaAVS~AGgLG~la~~~~~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~-~~~~~l~vi~e~ 81 (320)
T cd04743 5 IVQGPMTRVSDVAEF--AVAVAEGGGLPFIALALMRGEQVKALLEETAELLGDKPWGVGILGFVDTE-LRAAQLAVVRAI 81 (320)
T ss_pred EECCCcCCCCCcHHH--HHHHHhCCccccCCCCCCCHHHHHHHHHHHHHhccCCCeEEEEeccCCCc-chHHHHHHHHhc
Confidence 456788776652 33 24566666655411 2245655554433333 257999988542 32 223444444 55
Q ss_pred CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCC
Q psy7344 139 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWP 217 (240)
Q Consensus 139 ~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~ 217 (240)
.+..|-+..| +|+.+ +.+++. .+.|.... .....++.+++ |+|
T Consensus 82 ~v~~V~~~~G-----------------~P~~~----~~lk~~------------Gi~v~~~v---~s~~~A~~a~~~GaD 125 (320)
T cd04743 82 KPTFALIAGG-----------------RPDQA----RALEAI------------GISTYLHV---PSPGLLKQFLENGAR 125 (320)
T ss_pred CCcEEEEcCC-----------------ChHHH----HHHHHC------------CCEEEEEe---CCHHHHHHHHHcCCC
Confidence 6666666544 34333 333332 33444322 34456788888 999
Q ss_pred eEEEecccc
Q psy7344 218 LLTELGKMA 226 (240)
Q Consensus 218 ~itih~R~~ 226 (240)
.|.+.|.-.
T Consensus 126 ~vVaqG~EA 134 (320)
T cd04743 126 KFIFEGREC 134 (320)
T ss_pred EEEEecCcC
Confidence 999987654
No 205
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=87.96 E-value=3.4 Score=36.20 Aligned_cols=80 Identities=8% Similarity=-0.095 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+. .|+++|-++-. +|....-..+.-.++++.+.+.. . .++||.+=+.
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~Gs----------tGE~~~lt~~Er~~l~~~~~~~~--------~-~~~~vi~gv~~~ 79 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCGT----------TGESPTLSDEEHEAVIEAVVEAV--------N-GRVPVIAGTGSN 79 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCC----------CcchhhCCHHHHHHHHHHHHHHh--------C-CCCcEEeccCCc
Confidence 6677777777764 58999988633 34444456666667777666651 1 2467766665
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..+++++++.+++ |+|++.+..
T Consensus 80 ~~~~~~~~a~~a~~~G~d~v~~~~ 103 (284)
T cd00950 80 NTAEAIELTKRAEKAGADAALVVT 103 (284)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcc
Confidence 5678899999999 999998853
No 206
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=87.95 E-value=3.9 Score=36.19 Aligned_cols=80 Identities=10% Similarity=0.117 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHH-c-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee-
Q psy7344 125 DSKNLTEAAKLA-E-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r- 201 (240)
|.+.+.+.++.+ + .|++||-++-. +|....-..+.-.++++.+.+.+ . -++||.+-+-
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~Gs----------tGE~~~Ls~eEr~~~~~~~~~~~--------~-~~~~viagvg~ 82 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGGS----------TGEAFLLSTEEKKQVLEIVAEEA--------K-GKVKLIAQVGS 82 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECCC----------ccccccCCHHHHHHHHHHHHHHh--------C-CCCCEEecCCC
Confidence 677788877776 5 58899987543 34433334455556666555541 1 2568877765
Q ss_pred --hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 --VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 --~~~~~~~~~~l~~-G~~~itih~ 223 (240)
+.+++++++.+++ |+|++.+..
T Consensus 83 ~~t~~ai~~a~~a~~~Gad~v~v~~ 107 (293)
T PRK04147 83 VNTAEAQELAKYATELGYDAISAVT 107 (293)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 5678899999999 999999864
No 207
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=87.93 E-value=3.9 Score=37.91 Aligned_cols=96 Identities=14% Similarity=0.021 Sum_probs=60.6
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc---cCCHHHHHHHHH
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTNLVY 175 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l---~~~p~~i~~iv~ 175 (240)
+|+-|+.+.... +.|++++ .+-+..++.+.++.|+|+|++.- |+| .++ ..-.+.+.++.+
T Consensus 233 tW~di~~lr~~~---~~pvivK----gV~s~~dA~~a~~~Gvd~I~Vs~--------hGG--r~~d~~~~t~~~L~~i~~ 295 (381)
T PRK11197 233 SWKDLEWIRDFW---DGPMVIK----GILDPEDARDAVRFGADGIVVSN--------HGG--RQLDGVLSSARALPAIAD 295 (381)
T ss_pred CHHHHHHHHHhC---CCCEEEE----ecCCHHHHHHHHhCCCCEEEECC--------CCC--CCCCCcccHHHHHHHHHH
Confidence 477777776543 3688776 22444466667778999999742 222 222 222344444444
Q ss_pred HhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 176 SPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 176 ~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
++. .++||.+-.-+.+-.++++.|..||+++.+ ||-
T Consensus 296 a~~-------------~~~~vi~dGGIr~g~Di~KALaLGA~~V~i-Gr~ 331 (381)
T PRK11197 296 AVK-------------GDITILADSGIRNGLDVVRMIALGADTVLL-GRA 331 (381)
T ss_pred Hhc-------------CCCeEEeeCCcCcHHHHHHHHHcCcCceeE-hHH
Confidence 321 246777777777888999999889999988 653
No 208
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=87.85 E-value=2.8 Score=35.79 Aligned_cols=75 Identities=21% Similarity=0.045 Sum_probs=47.7
Q ss_pred HHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHH
Q psy7344 128 NLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRG 206 (240)
Q Consensus 128 ~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~ 206 (240)
+..++++.+++ |++.|-+.- .. +.|.. -..+++.++++.+. .++||.+-..+.+..
T Consensus 150 ~~~~~~~~~~~~G~~~i~~~~-----~~-~~g~~--~g~~~~~i~~i~~~---------------~~iPvia~GGI~~~~ 206 (241)
T PRK13585 150 TPVEAAKRFEELGAGSILFTN-----VD-VEGLL--EGVNTEPVKELVDS---------------VDIPVIASGGVTTLD 206 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEe-----ec-CCCCc--CCCCHHHHHHHHHh---------------CCCCEEEeCCCCCHH
Confidence 45667777755 777764321 11 11111 23688888888775 456777777777777
Q ss_pred HHHHHHhC-CCCeEEEeccccc
Q psy7344 207 HYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 207 ~~~~~l~~-G~~~itih~R~~~ 227 (240)
++.+ +.+ |++++.+ |+.-.
T Consensus 207 di~~-~~~~Ga~gv~v-gsa~~ 226 (241)
T PRK13585 207 DLRA-LKEAGAAGVVV-GSALY 226 (241)
T ss_pred HHHH-HHHcCCCEEEE-EHHHh
Confidence 7666 566 9999998 65543
No 209
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=87.82 E-value=4.2 Score=35.13 Aligned_cols=74 Identities=12% Similarity=0.030 Sum_probs=49.1
Q ss_pred HHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHH
Q psy7344 128 NLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRG 206 (240)
Q Consensus 128 ~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~ 206 (240)
+..+.++.+++ +++.|=+.-- .+.|+.. ..|++.++++.+. .++||.+-..+.+..
T Consensus 154 ~~~~~~~~~~~~g~~~ii~~~i------~~~g~~~--g~d~~~i~~~~~~---------------~~ipvia~GGv~s~~ 210 (253)
T PRK02083 154 DAVEWAKEVEELGAGEILLTSM------DRDGTKN--GYDLELTRAVSDA---------------VNVPVIASGGAGNLE 210 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEcCC------cCCCCCC--CcCHHHHHHHHhh---------------CCCCEEEECCCCCHH
Confidence 45566666644 7777654211 0112222 3589988888764 456788877788888
Q ss_pred HHHHHHhC-CCCeEEEeccc
Q psy7344 207 HYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 207 ~~~~~l~~-G~~~itih~R~ 225 (240)
++.+.++. |++++.+ |+.
T Consensus 211 d~~~~~~~~G~~gviv-g~a 229 (253)
T PRK02083 211 HFVEAFTEGGADAALA-ASI 229 (253)
T ss_pred HHHHHHHhCCccEEeE-hHH
Confidence 99999988 9999987 443
No 210
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=87.81 E-value=4.3 Score=37.65 Aligned_cols=96 Identities=16% Similarity=0.068 Sum_probs=62.0
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc---cCCHHHHHHHHH
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTNLVY 175 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l---~~~p~~i~~iv~ 175 (240)
+|+-|+.+.... +.|++++ .+.+..++.+.++.|+|+|.+.-+ +| ..+ ..--+.+.++.+
T Consensus 241 tW~~i~~lr~~~---~~pvivK----gV~~~~dA~~a~~~G~d~I~vsnh--------GG--r~~d~~~~t~~~L~ei~~ 303 (383)
T cd03332 241 TWEDLAFLREWT---DLPIVLK----GILHPDDARRAVEAGVDGVVVSNH--------GG--RQVDGSIAALDALPEIVE 303 (383)
T ss_pred CHHHHHHHHHhc---CCCEEEe----cCCCHHHHHHHHHCCCCEEEEcCC--------CC--cCCCCCcCHHHHHHHHHH
Confidence 588888876654 3688887 223344566666779999998522 22 122 222334444444
Q ss_pred HhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 176 SPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 176 ~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
++. .++||.+-.-+.+-.++++.|..||+++.+ ||.
T Consensus 304 ~~~-------------~~~~vi~dGGIr~G~Dv~KALaLGA~~v~i-Gr~ 339 (383)
T cd03332 304 AVG-------------DRLTVLFDSGVRTGADIMKALALGAKAVLI-GRP 339 (383)
T ss_pred Hhc-------------CCCeEEEeCCcCcHHHHHHHHHcCCCEEEE-cHH
Confidence 432 246777777777788999999889999988 664
No 211
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=87.72 E-value=2.6 Score=38.84 Aligned_cols=94 Identities=13% Similarity=-0.002 Sum_probs=61.0
Q ss_pred CCceeEEeec--------CCHHHHHHHHHHHcc-C-CCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhcccc
Q psy7344 114 MCGHSLMFCG--------NDSKNLTEAAKLAEP-H-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFV 183 (240)
Q Consensus 114 ~~pvivqi~g--------~d~~~~~~aa~~le~-~-~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~ 183 (240)
+.|+.+.|.. .+.+++.++++.|++ | +|.|++-.|-.... +......+.........++..
T Consensus 216 ~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~------~~~~~~~~~~~~~~a~~i~~~--- 286 (363)
T COG1902 216 DFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERG------GTITVSGPGYQVEFAARIKKA--- 286 (363)
T ss_pred CceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCC------CCccccccchhHHHHHHHHHh---
Confidence 4577776643 356688889999976 7 79999877633210 000011133444445555555
Q ss_pred ccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 184 IAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 184 i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
..+|+.+-.++.+....-+.|++ .+|.|.+ ||-
T Consensus 287 --------~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~-gR~ 320 (363)
T COG1902 287 --------VRIPVIAVGGINDPEQAEEILASGRADLVAM-GRP 320 (363)
T ss_pred --------cCCCEEEeCCCCCHHHHHHHHHcCCCCEEEe-chh
Confidence 56788888887777777788888 6999998 774
No 212
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=87.65 E-value=4.6 Score=34.31 Aligned_cols=85 Identities=8% Similarity=-0.072 Sum_probs=53.7
Q ss_pred CCCceeEEeec--------CCHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhcccc
Q psy7344 113 HMCGHSLMFCG--------NDSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFV 183 (240)
Q Consensus 113 ~~~pvivqi~g--------~d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~ 183 (240)
...|+++.... .+.+....+++... .|+|.|-++.. .+++.++++++.
T Consensus 121 ~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~----------------~~~~~~~~i~~~------- 177 (235)
T cd00958 121 YGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYT----------------GDAESFKEVVEG------- 177 (235)
T ss_pred cCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCC----------------CCHHHHHHHHhc-------
Confidence 35678776533 23455566566554 48999888421 267778777764
Q ss_pred ccCCCCCCCCeeeEE----eee-hhcHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 184 IAEPHCDGNDINIGC----PQM-VAKRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 184 i~~~~~~~~~~pvsv----K~r-~~~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
..+||.+ +.+ .+++.+.++.+.+ |++++.+ ||.-.|.
T Consensus 178 --------~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~v-g~~i~~~ 220 (235)
T cd00958 178 --------CPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAV-GRNIFQR 220 (235)
T ss_pred --------CCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEe-chhhhcC
Confidence 3445533 222 3446677777888 9999987 8887764
No 213
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=87.65 E-value=1.2 Score=38.53 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=28.5
Q ss_pred ceeEEeecCCHHHHHHHHHHHccCCCEEEecCC
Q psy7344 116 GHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIG 148 (240)
Q Consensus 116 pvivqi~g~d~~~~~~aa~~le~~~d~Idin~g 148 (240)
|+ ++|..+.+.+..++|-+++.|+|||=++.|
T Consensus 208 PV-vnFAAGGvATPADAALMM~LGadGVFVGSG 239 (296)
T COG0214 208 PV-VNFAAGGVATPADAALMMQLGADGVFVGSG 239 (296)
T ss_pred Ce-EeecccCcCChhHHHHHHHhCCCeEEeccc
Confidence 54 588888899999999999999999999888
No 214
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=87.64 E-value=3.5 Score=35.30 Aligned_cols=82 Identities=6% Similarity=-0.075 Sum_probs=49.9
Q ss_pred ceeEEeecCCHHHHHHHHHHHcc---CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC
Q psy7344 116 GHSLMFCGNDSKNLTEAAKLAEP---HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN 192 (240)
Q Consensus 116 pvivqi~g~d~~~~~~aa~~le~---~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~ 192 (240)
++++.+ |..+..++.+.+++ ..++++++.+. -. .+ -++.++.+.+. . .
T Consensus 4 ~lilAl---D~~~~~~~l~~~~~~~~~~~~ikvg~~~--f~----~~------G~~~i~~l~~~---~-----------~ 54 (230)
T PRK00230 4 RLIVAL---DFPSKEEALAFLDQLDPAVLFVKVGMEL--FT----AG------GPQFVRELKQR---G-----------F 54 (230)
T ss_pred CeEEEc---CCCCHHHHHHHHHhcCCcccEEEEcHHH--HH----hc------CHHHHHHHHhc---C-----------C
Confidence 455543 54444555555543 46889988762 21 11 13334444432 2 5
Q ss_pred CeeeEEeee--hhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 193 DINIGCPQM--VAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 193 ~~pvsvK~r--~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
.+++-+|+- ......+++.+.+ |+|.+|+|+-..
T Consensus 55 ~i~~D~Kl~Di~~t~~~~i~~~~~~gad~itvH~~ag 91 (230)
T PRK00230 55 KVFLDLKLHDIPNTVAKAVRALAKLGVDMVNVHASGG 91 (230)
T ss_pred CEEEEeehhhccccHHHHHHHHHHcCCCEEEEcccCC
Confidence 678889984 4555677888888 999999998553
No 215
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=87.48 E-value=3.5 Score=35.47 Aligned_cols=83 Identities=11% Similarity=-0.041 Sum_probs=59.7
Q ss_pred CceeEEeecCCHHHHHHHHHHHcc-CCCE--EEecCC--CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLAEP-HCDG--IDINIG--CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHC 189 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~le~-~~d~--Idin~g--CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~ 189 (240)
.++.++|...|...+.+-.+.+++ ++|. +|+==| +|+. .--|+.++.+ +
T Consensus 13 ~~I~pSil~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNi-----------tfGp~~i~~i----~----------- 66 (228)
T PRK08091 13 QPISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFF-----------TVGAIAIKQF----P----------- 66 (228)
T ss_pred CeEEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCcc-----------ccCHHHHHHh----C-----------
Confidence 467889988999999988888876 6664 444222 2332 1245554444 2
Q ss_pred CCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 190 DGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 190 ~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.+.|+.+-+.+.+..++.+.+.+ |+|.||+|.-.
T Consensus 67 --~~~~~DvHLMv~~P~~~i~~~~~aGad~It~H~Ea 101 (228)
T PRK08091 67 --THCFKDVHLMVRDQFEVAKACVAAGADIVTLQVEQ 101 (228)
T ss_pred --CCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccC
Confidence 23488898889999999999999 99999999874
No 216
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=87.47 E-value=4.9 Score=35.47 Aligned_cols=80 Identities=8% Similarity=0.051 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHH-cc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee-
Q psy7344 125 DSKNLTEAAKLA-EP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r- 201 (240)
|.+.+.+.++.+ +. |++||-++-. +|....-..+.-.++++.+.+.+ . .++||.+-+-
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~~Gs----------tGE~~~Lt~~Er~~~~~~~~~~~--------~-~~~~viagv~~ 79 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYVNGS----------TGEGFLLSVEERKQIAEIVAEAA--------K-GKVTLIAHVGS 79 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECcC----------CcCcccCCHHHHHHHHHHHHHHh--------C-CCCeEEeccCC
Confidence 677777777766 56 7899887543 34444334555556666655541 1 2567777654
Q ss_pred --hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 --VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 --~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..+++++++.+++ |+|++.+..
T Consensus 80 ~~~~~ai~~a~~a~~~Gad~v~~~~ 104 (288)
T cd00954 80 LNLKESQELAKHAEELGYDAISAIT 104 (288)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 5678999999999 999998743
No 217
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=87.38 E-value=4.3 Score=35.69 Aligned_cols=80 Identities=11% Similarity=0.001 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
|.+.+.+.++.+ +.|++++-++-. +|....-..+.-.++++.+.+.. ..++||.+-+-
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~Gs----------tGE~~~Lt~~Er~~l~~~~~~~~---------~~~~~vi~gv~~~ 80 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGS----------TGEFYSLTDEERKELLEIVVEAA---------AGRVPVIAGVGAN 80 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESST----------TTTGGGS-HHHHHHHHHHHHHHH---------TTSSEEEEEEESS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCC----------CcccccCCHHHHHHHHHHHHHHc---------cCceEEEecCcch
Confidence 667777888876 458999988544 23333334444456666655531 03678887766
Q ss_pred -hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 -VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 -~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..+++++++.+++ |+|++.+..
T Consensus 81 st~~~i~~a~~a~~~Gad~v~v~~ 104 (289)
T PF00701_consen 81 STEEAIELARHAQDAGADAVLVIP 104 (289)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred hHHHHHHHHHHHhhcCceEEEEec
Confidence 5678999999999 999998753
No 218
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=87.26 E-value=2.4 Score=35.99 Aligned_cols=85 Identities=14% Similarity=0.071 Sum_probs=49.3
Q ss_pred ceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 116 GHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 116 pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++++-|--.|.++..+.++.+....+.+.+|.- .-. ..-++.++++.+ .. .+.+
T Consensus 5 ~l~vALD~~~~~~a~~l~~~l~~~v~~~kvG~~--l~~----------~~G~~~i~~lk~----~~----------~~~~ 58 (216)
T PRK13306 5 LLQIALDNQDLESAIEDAKKVAEEVDIIEVGTI--LLL----------AEGMKAVRVLRA----LY----------PDKI 58 (216)
T ss_pred cEEEEecCCCHHHHHHHHHHccccCCEEEEChH--HHH----------HhCHHHHHHHHH----HC----------CCCE
Confidence 355555345677777777777777788888654 211 011344444443 21 3457
Q ss_pred eEEeeehhcHHHH-HHHHhC-CCCeEEEecccc
Q psy7344 196 IGCPQMVAKRGHY-GAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 196 vsvK~r~~~~~~~-~~~l~~-G~~~itih~R~~ 226 (240)
|.+-+.+.+.-.+ ++.+.+ |+|.+|+|+-..
T Consensus 59 v~~DLK~~Di~~~v~~~~~~~Gad~vTvH~~a~ 91 (216)
T PRK13306 59 IVADTKIADAGKILAKMAFEAGADWVTVICAAH 91 (216)
T ss_pred EEEEEeecCCcHHHHHHHHHCCCCEEEEeCCCC
Confidence 7766664333222 223667 999999999653
No 219
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=87.23 E-value=5.3 Score=34.15 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=45.5
Q ss_pred HHHHHHHHccCCCEEE--ecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh----
Q psy7344 129 LTEAAKLAEPHCDGID--INIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV---- 202 (240)
Q Consensus 129 ~~~aa~~le~~~d~Id--in~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~---- 202 (240)
..++.+.+++|++.|| +|.|.+ .-.+|+.+.+-+..+++. . .|+.+|+-+
T Consensus 77 ~~e~~~Ai~~GA~EiD~Vin~~~~------------~~g~~~~v~~ei~~v~~~-----------~-~~~~lKvIlEt~~ 132 (221)
T PRK00507 77 AFEAKDAIANGADEIDMVINIGAL------------KSGDWDAVEADIRAVVEA-----------A-GGAVLKVIIETCL 132 (221)
T ss_pred HHHHHHHHHcCCceEeeeccHHHh------------cCCCHHHHHHHHHHHHHh-----------c-CCceEEEEeecCc
Confidence 3455666678998888 455532 224788887777777765 2 256677732
Q ss_pred ---hcHHHHHHHHhC-CCCeEEE
Q psy7344 203 ---AKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 203 ---~~~~~~~~~l~~-G~~~iti 221 (240)
+...+.++.+.+ |+|+|.-
T Consensus 133 L~~e~i~~a~~~~~~agadfIKT 155 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKT 155 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEc
Confidence 335677788888 9998754
No 220
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=87.14 E-value=2.2 Score=40.97 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=46.4
Q ss_pred HHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh---------
Q psy7344 132 AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV--------- 202 (240)
Q Consensus 132 aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~--------- 202 (240)
+.+++++|+|.||||++-. -.+++.+..+++.+++. .+.|||+-..-
T Consensus 171 A~~~~~~GADIIDIG~~st-------------~p~~~~v~~~V~~l~~~-----------~~~pISIDT~~~~v~eaAL~ 226 (499)
T TIGR00284 171 AARMERDGADMVALGTGSF-------------DDDPDVVKEKVKTALDA-----------LDSPVIADTPTLDELYEALK 226 (499)
T ss_pred HHHHHHCCCCEEEECCCcC-------------CCcHHHHHHHHHHHHhh-----------CCCcEEEeCCCHHHHHHHHH
Confidence 4455677999999998721 02555788888888776 56788887651
Q ss_pred -----------hcHHHHHHHHhC-CCCeEEEec
Q psy7344 203 -----------AKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 203 -----------~~~~~~~~~l~~-G~~~itih~ 223 (240)
....++++.+.+ |+..|.+|.
T Consensus 227 aGAdiINsVs~~~~d~~~~l~a~~g~~vVlm~~ 259 (499)
T TIGR00284 227 AGASGVIMPDVENAVELASEKKLPEDAFVVVPG 259 (499)
T ss_pred cCCCEEEECCccchhHHHHHHHHcCCeEEEEcC
Confidence 122355565677 888888885
No 221
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=86.95 E-value=2.2 Score=38.91 Aligned_cols=87 Identities=10% Similarity=0.038 Sum_probs=57.1
Q ss_pred ecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee
Q psy7344 122 CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM 201 (240)
Q Consensus 122 ~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r 201 (240)
.++++.+.+-+..+++.|+|+|-++.|.-+..+.+.-+|... .....+.++.++.++ ..+||.+-.-
T Consensus 155 IaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~-PQltAV~~~a~~a~~------------~gvpiIADGG 221 (346)
T PRK05096 155 CAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGY-PQLSAVIECADAAHG------------LGGQIVSDGG 221 (346)
T ss_pred EEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccCh-hHHHHHHHHHHHHHH------------cCCCEEecCC
Confidence 345555555455555679999999999444444444444432 344555555555443 3567777777
Q ss_pred hhcHHHHHHHHhCCCCeEEE
Q psy7344 202 VAKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 202 ~~~~~~~~~~l~~G~~~iti 221 (240)
+...-+++++|..|||++.+
T Consensus 222 i~~sGDI~KAlaaGAd~VMl 241 (346)
T PRK05096 222 CTVPGDVAKAFGGGADFVML 241 (346)
T ss_pred cccccHHHHHHHcCCCEEEe
Confidence 77778899999889999987
No 222
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=86.89 E-value=3.5 Score=33.31 Aligned_cols=67 Identities=6% Similarity=-0.144 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh-
Q psy7344 125 DSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV- 202 (240)
Q Consensus 125 d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~- 202 (240)
|.+.+.+.++.+. .|+++|.++. +.++.+.+.+.. .++|+.+++..
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------------------~~i~~~~~~~~~------------~~~~v~~~v~~~ 58 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------------------GYVRLAADALAG------------SDVPVIVVVGFP 58 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------------------HHHHHHHHHhCC------------CCCeEEEEecCC
Confidence 7778888888774 4788888853 344444443221 14688888873
Q ss_pred ------hcHHHHHHHHhC-CCCeEEEec
Q psy7344 203 ------AKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 203 ------~~~~~~~~~l~~-G~~~itih~ 223 (240)
+.+.+.++.+.+ |+|++.++.
T Consensus 59 ~~~~~~~~~~~~a~~a~~~Gad~i~v~~ 86 (201)
T cd00945 59 TGLTTTEVKVAEVEEAIDLGADEIDVVI 86 (201)
T ss_pred CCCCcHHHHHHHHHHHHHcCCCEEEEec
Confidence 346788888999 999999863
No 223
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=86.70 E-value=1.8 Score=40.27 Aligned_cols=51 Identities=16% Similarity=0.086 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHhhhccccccCCCCCCCC-eeeEEeeehh-cHHHHHHHHhC-CCCeEEEecccc
Q psy7344 165 DDWPLLTNLVYSPNMVHFVIAEPHCDGND-INIGCPQMVA-KRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 165 ~~p~~i~~iv~~~~~~~~~i~~~~~~~~~-~pvsvK~r~~-~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
.+++.+.++++.+++. .. +||.+|+-.. +..++++.++. |+|+|+|-|.-.
T Consensus 196 ~~~~~l~~~I~~lr~~-----------~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~G 249 (392)
T cd02808 196 YSIEDLAQLIEDLREA-----------TGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEG 249 (392)
T ss_pred CCHHHHHHHHHHHHHh-----------CCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCC
Confidence 5777888999999997 55 8999999944 67789999999 899999988744
No 224
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=86.61 E-value=1.5 Score=37.11 Aligned_cols=82 Identities=12% Similarity=0.070 Sum_probs=51.2
Q ss_pred HHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh-ccccccCCCCCCCCeeeEEeeeh-------
Q psy7344 131 EAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM-VHFVIAEPHCDGNDINIGCPQMV------- 202 (240)
Q Consensus 131 ~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~-~~~~i~~~~~~~~~~pvsvK~r~------- 202 (240)
++.+++++|+|.||||.+--.+ +......-..++.+..+++.+++ . .++|+|+-..-
T Consensus 24 ~a~~~~~~GAdiIDIg~~st~p----~~~~v~~~eE~~rl~~~l~~i~~~~-----------~~~plSIDT~~~~v~~~a 88 (210)
T PF00809_consen 24 RAREQVEAGADIIDIGAESTRP----GATPVSEEEEMERLVPVLQAIREEN-----------PDVPLSIDTFNPEVAEAA 88 (210)
T ss_dssp HHHHHHHTT-SEEEEESSTSST----TSSSSHHHHHHHHHHHHHHHHHHHH-----------TTSEEEEEESSHHHHHHH
T ss_pred HHHHHHHhcCCEEEecccccCC----CCCcCCHHHHHHHHHHHHHHHhccC-----------CCeEEEEECCCHHHHHHH
Confidence 4555667899999999883111 10000012355666666666665 3 57899988771
Q ss_pred --------------hcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 203 --------------AKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 203 --------------~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
....++.+.+.+ |+..|.+|.+...
T Consensus 89 L~~g~~~ind~~~~~~~~~~~~l~a~~~~~vV~m~~~~~~ 128 (210)
T PF00809_consen 89 LKAGADIINDISGFEDDPEMLPLAAEYGAPVVLMHSDGNP 128 (210)
T ss_dssp HHHTSSEEEETTTTSSSTTHHHHHHHHTSEEEEESESSET
T ss_pred HHcCcceEEecccccccchhhhhhhcCCCEEEEEeccccc
Confidence 113457778888 9999999998433
No 225
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=86.41 E-value=3.6 Score=34.51 Aligned_cols=83 Identities=7% Similarity=-0.041 Sum_probs=48.7
Q ss_pred ceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 116 GHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 116 pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++.+-+--.|.++..+.++.+....++|.+|..+ -. .--+ ++++.+++. ..++
T Consensus 5 ~l~~alD~~~~~~~~~~~~~~~~~~~~vk~g~~l--~~----------~~G~----~~v~~ir~~-----------~~i~ 57 (215)
T PRK13813 5 RIILALDVTDRERALKIAEELDDYVDAIKVGWPL--VL----------ASGL----GIIEELKRY-----------APVI 57 (215)
T ss_pred CEEEEeCCCCHHHHHHHHHhccccCCEEEEcHHH--HH----------hhCH----HHHHHHHhc-----------CCEE
Confidence 3544442334444444444443446778776543 10 0123 355555554 5678
Q ss_pred eEEeee-hhcH-HHHHHHHhC-CCCeEEEeccc
Q psy7344 196 IGCPQM-VAKR-GHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 196 vsvK~r-~~~~-~~~~~~l~~-G~~~itih~R~ 225 (240)
+-+|+- +.++ ..+++.+.+ |+|.+|+|.-.
T Consensus 58 ~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e~ 90 (215)
T PRK13813 58 ADLKVADIPNTNRLICEAVFEAGAWGIIVHGFT 90 (215)
T ss_pred EEeeccccHHHHHHHHHHHHhCCCCEEEEcCcC
Confidence 889987 4444 345578888 99999999986
No 226
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=86.39 E-value=4.3 Score=34.06 Aligned_cols=73 Identities=11% Similarity=-0.033 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhc
Q psy7344 126 SKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAK 204 (240)
Q Consensus 126 ~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~ 204 (240)
..++.+.|+..++ |+++|-++-= .. +....++.++.+.+ . .++||.+|..+.+
T Consensus 30 ~~~~~~~A~~~~~~GA~~l~v~~~-------~~----~~~g~~~~~~~i~~----~-----------v~iPi~~~~~i~~ 83 (217)
T cd00331 30 DFDPVEIAKAYEKAGAAAISVLTE-------PK----YFQGSLEDLRAVRE----A-----------VSLPVLRKDFIID 83 (217)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeC-------cc----ccCCCHHHHHHHHH----h-----------cCCCEEECCeecC
Confidence 3457788888866 7888855422 11 01234555544444 3 4679998865444
Q ss_pred HHHHHHHHhC-CCCeEEEeccc
Q psy7344 205 RGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 205 ~~~~~~~l~~-G~~~itih~R~ 225 (240)
. +.++.+.+ |+|++++-.+.
T Consensus 84 ~-~~v~~~~~~Gad~v~l~~~~ 104 (217)
T cd00331 84 P-YQIYEARAAGADAVLLIVAA 104 (217)
T ss_pred H-HHHHHHHHcCCCEEEEeecc
Confidence 4 46777777 99999975543
No 227
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=86.05 E-value=8 Score=33.68 Aligned_cols=74 Identities=15% Similarity=0.128 Sum_probs=47.7
Q ss_pred eecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEe
Q psy7344 121 FCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCP 199 (240)
Q Consensus 121 i~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK 199 (240)
.+..|+.. ++.+++ ||+.|+- .|-|. |.|.. +.+|+.++.+++. .++||.+-
T Consensus 129 yc~dd~~~----ar~l~~~G~~~vmP-lg~pI------Gsg~G-i~~~~~I~~I~e~---------------~~vpVI~e 181 (248)
T cd04728 129 YCTDDPVL----AKRLEDAGCAAVMP-LGSPI------GSGQG-LLNPYNLRIIIER---------------ADVPVIVD 181 (248)
T ss_pred EeCCCHHH----HHHHHHcCCCEeCC-CCcCC------CCCCC-CCCHHHHHHHHHh---------------CCCcEEEe
Confidence 45566653 333333 7777733 22222 23332 4679999877764 35688888
Q ss_pred eehhcHHHHHHHHhCCCCeEEE
Q psy7344 200 QMVAKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 200 ~r~~~~~~~~~~l~~G~~~iti 221 (240)
-++....+..++++.|+|++.+
T Consensus 182 gGI~tpeda~~AmelGAdgVlV 203 (248)
T cd04728 182 AGIGTPSDAAQAMELGADAVLL 203 (248)
T ss_pred CCCCCHHHHHHHHHcCCCEEEE
Confidence 8888888888888889999876
No 228
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=85.89 E-value=8.3 Score=35.24 Aligned_cols=100 Identities=18% Similarity=0.041 Sum_probs=62.4
Q ss_pred CChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc---cCCHHHHHHHH
Q psy7344 98 DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL---QDDWPLLTNLV 174 (240)
Q Consensus 98 ~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l---~~~p~~i~~iv 174 (240)
..|+.++.+.... +.|++++-. .+ ..++.+..+.|+|+|.+.- |+| .++ ..-.+.+.++.
T Consensus 200 ~~~~~i~~l~~~~---~~PvivKgv-~~---~~dA~~a~~~G~d~I~vsn--------hgG--~~~d~~~~~~~~L~~i~ 262 (344)
T cd02922 200 LTWDDIKWLRKHT---KLPIVLKGV-QT---VEDAVLAAEYGVDGIVLSN--------HGG--RQLDTAPAPIEVLLEIR 262 (344)
T ss_pred CCHHHHHHHHHhc---CCcEEEEcC-CC---HHHHHHHHHcCCCEEEEEC--------CCc--ccCCCCCCHHHHHHHHH
Confidence 4578888876544 479998822 22 3344445566999999742 222 222 22234455555
Q ss_pred HHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 175 YSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 175 ~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
+.+.+. + .++||.+-.-+.+-.+.++.+..||+++.+ ||-
T Consensus 263 ~~~~~~------~----~~~~vi~~GGIr~G~Dv~kalaLGA~aV~i-G~~ 302 (344)
T cd02922 263 KHCPEV------F----DKIEVYVDGGVRRGTDVLKALCLGAKAVGL-GRP 302 (344)
T ss_pred HHHHHh------C----CCceEEEeCCCCCHHHHHHHHHcCCCEEEE-CHH
Confidence 543332 0 257888777788888999999889999988 653
No 229
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=85.88 E-value=4.7 Score=37.71 Aligned_cols=88 Identities=13% Similarity=0.025 Sum_probs=56.2
Q ss_pred CCHHHHHHHHHHHccCCCEEEecCCCchh-hhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh
Q psy7344 124 NDSKNLTEAAKLAEPHCDGIDINIGCPQM-VAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV 202 (240)
Q Consensus 124 ~d~~~~~~aa~~le~~~d~Idin~gCP~~-~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~ 202 (240)
++..+...+..+++.|+|+|-++.| |-. .+.+.-.|.. ..+...+..+.+.+.. .++||.+-..+
T Consensus 200 g~V~T~e~a~~l~~aGaD~I~vG~g-~Gs~c~tr~~~g~g-~p~ltai~~v~~~~~~------------~~vpVIAdGGI 265 (404)
T PRK06843 200 GNIVTKEAALDLISVGADCLKVGIG-PGSICTTRIVAGVG-VPQITAICDVYEVCKN------------TNICIIADGGI 265 (404)
T ss_pred EecCCHHHHHHHHHcCCCEEEECCC-CCcCCcceeecCCC-CChHHHHHHHHHHHhh------------cCCeEEEeCCC
Confidence 5566666666667779999998876 321 1111111111 1344555555444332 46789888888
Q ss_pred hcHHHHHHHHhCCCCeEEEeccc
Q psy7344 203 AKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 203 ~~~~~~~~~l~~G~~~itih~R~ 225 (240)
.+..+++++|..||+++.+-.+.
T Consensus 266 ~~~~Di~KALalGA~aVmvGs~~ 288 (404)
T PRK06843 266 RFSGDVVKAIAAGADSVMIGNLF 288 (404)
T ss_pred CCHHHHHHHHHcCCCEEEEccee
Confidence 88999999999899999884433
No 230
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=85.87 E-value=2.7 Score=35.16 Aligned_cols=76 Identities=20% Similarity=0.123 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehh
Q psy7344 124 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVA 203 (240)
Q Consensus 124 ~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~ 203 (240)
.|..+++++....+.|+|.|-.-+.-=-..+ .+ -..|+++++++++ .++||.+-.|+.
T Consensus 97 ADist~ee~~~A~~~G~D~I~TTLsGYT~~t----~~--~~pD~~lv~~l~~----------------~~~pvIaEGri~ 154 (192)
T PF04131_consen 97 ADISTLEEAINAAELGFDIIGTTLSGYTPYT----KG--DGPDFELVRELVQ----------------ADVPVIAEGRIH 154 (192)
T ss_dssp EE-SSHHHHHHHHHTT-SEEE-TTTTSSTTS----TT--SSHHHHHHHHHHH----------------TTSEEEEESS--
T ss_pred eecCCHHHHHHHHHcCCCEEEcccccCCCCC----CC--CCCCHHHHHHHHh----------------CCCcEeecCCCC
Confidence 5667777777777789998876544211111 11 2467777777665 245899999998
Q ss_pred cHHHHHHHHhCCCCeEEE
Q psy7344 204 KRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 204 ~~~~~~~~l~~G~~~iti 221 (240)
+..+..+.++.|+.+++|
T Consensus 155 tpe~a~~al~~GA~aVVV 172 (192)
T PF04131_consen 155 TPEQAAKALELGAHAVVV 172 (192)
T ss_dssp SHHHHHHHHHTT-SEEEE
T ss_pred CHHHHHHHHhcCCeEEEE
Confidence 888888888889999998
No 231
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=85.54 E-value=3.7 Score=35.96 Aligned_cols=67 Identities=13% Similarity=0.062 Sum_probs=44.1
Q ss_pred HHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHH
Q psy7344 132 AAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGA 210 (240)
Q Consensus 132 aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~ 210 (240)
+++.+++ ||..||- .|.|. |.|.. +.||..++-|++. .++||.+---+....+.++
T Consensus 150 ~a~rLed~Gc~aVMP-lgsPI------GSg~G-l~n~~~l~~i~e~---------------~~vpVivdAGIgt~sDa~~ 206 (267)
T CHL00162 150 LAKHLEDIGCATVMP-LGSPI------GSGQG-LQNLLNLQIIIEN---------------AKIPVIIDAGIGTPSEASQ 206 (267)
T ss_pred HHHHHHHcCCeEEee-ccCcc------cCCCC-CCCHHHHHHHHHc---------------CCCcEEEeCCcCCHHHHHH
Confidence 3444444 5556654 33333 33333 5899999888875 4567777666777888888
Q ss_pred HHhCCCCeEEE
Q psy7344 211 YLQDDWPLLTE 221 (240)
Q Consensus 211 ~l~~G~~~iti 221 (240)
+.+.|+|++-+
T Consensus 207 AmElGaDgVL~ 217 (267)
T CHL00162 207 AMELGASGVLL 217 (267)
T ss_pred HHHcCCCEEee
Confidence 88879888755
No 232
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=85.34 E-value=6.9 Score=33.72 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=31.4
Q ss_pred cccCCCCeecccCCCchhhhhccCCCcccCCCchhHH-----HHHHHhhcccCCCcee
Q psy7344 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT-----ELVVHFSWVSKNGPLF 62 (240)
Q Consensus 10 ~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~-----~iv~ql~~~~~~~p~~ 62 (240)
+.+. +|.|.||+-||-+.. .|....+.++.+. +++.++. +..+.|+.
T Consensus 27 l~~~-ad~iElgip~sdp~a----dG~~i~~~~~~a~~~g~~~~v~~vr-~~~~~Pl~ 78 (244)
T PRK13125 27 LVEL-VDILELGIPPKYPKY----DGPVIRKSHRKVKGLDIWPLLEEVR-KDVSVPII 78 (244)
T ss_pred HHhh-CCEEEECCCCCCCCC----CCHHHHHHHHHHHHcCcHHHHHHHh-ccCCCCEE
Confidence 4444 999999999998853 2444455555554 6788887 34567753
No 233
>KOG0538|consensus
Probab=85.08 E-value=6.8 Score=35.31 Aligned_cols=95 Identities=19% Similarity=0.058 Sum_probs=61.5
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEe-cCCCchhhhhcccccccc---cCCHHHHHHHH
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDI-NIGCPQMVAKRGHYGAYL---QDDWPLLTNLV 174 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idi-n~gCP~~~~~~~g~G~~l---~~~p~~i~~iv 174 (240)
+|+-|+.+...+ .-|++++ .+-..+++.+.+|.|++||=+ |-| |.+| .+.-+.+.+++
T Consensus 211 ~W~Di~wLr~~T---~LPIvvK----Gilt~eDA~~Ave~G~~GIIVSNHG-----------gRQlD~vpAtI~~L~Evv 272 (363)
T KOG0538|consen 211 SWKDIKWLRSIT---KLPIVVK----GVLTGEDARKAVEAGVAGIIVSNHG-----------GRQLDYVPATIEALPEVV 272 (363)
T ss_pred ChhhhHHHHhcC---cCCeEEE----eecccHHHHHHHHhCCceEEEeCCC-----------ccccCcccchHHHHHHHH
Confidence 466555544332 3688876 233334666777778888754 333 3344 45667777888
Q ss_pred HHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 175 YSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 175 ~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
+++.. ++||..-.-+..--+..++|.-||..|-+ ||-
T Consensus 273 ~aV~~-------------ri~V~lDGGVR~G~DVlKALALGAk~Vfi-GRP 309 (363)
T KOG0538|consen 273 KAVEG-------------RIPVFLDGGVRRGTDVLKALALGAKGVFI-GRP 309 (363)
T ss_pred HHhcC-------------ceEEEEecCcccchHHHHHHhcccceEEe-cCc
Confidence 77654 46777766666666788888889999987 774
No 234
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=85.01 E-value=1.7 Score=40.03 Aligned_cols=54 Identities=11% Similarity=-0.010 Sum_probs=36.6
Q ss_pred cCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHH-HHHHHhC-CCCeEEEeccccc
Q psy7344 164 QDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGH-YGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 164 ~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~-~~~~l~~-G~~~itih~R~~~ 227 (240)
..+++.+.+.++.+++.. ...||++|+-.....+ .+..+.+ |+|.|||-|.-..
T Consensus 184 i~s~edl~~~I~~Lr~~~----------~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GG 239 (368)
T PF01645_consen 184 IYSIEDLAQLIEELRELN----------PGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGG 239 (368)
T ss_dssp -SSHHHHHHHHHHHHHH-----------TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT--
T ss_pred cCCHHHHHHHHHHHHhhC----------CCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCC
Confidence 467888899999999971 2789999999544333 3343667 9999999887644
No 235
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=84.68 E-value=7.8 Score=32.68 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=49.7
Q ss_pred EEeecC-CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeE
Q psy7344 119 LMFCGN-DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIG 197 (240)
Q Consensus 119 vqi~g~-d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvs 197 (240)
++|+|- ++++... ..+.|+|.+=+.+--.++ + --+++.+++|.+.+...+ ..+-|+
T Consensus 3 vKICGit~~eda~~---~~~~GaD~iGfIf~~~Sp-----R-----~V~~~~a~~i~~~~~~~~----------~~VgVf 59 (207)
T PRK13958 3 LKFCGFTTIKDVTA---ASQLPIDAIGFIHYEKSK-----R-----HQTITQIKKLASAVPNHI----------DKVCVV 59 (207)
T ss_pred EEEcCCCcHHHHHH---HHHcCCCEEEEecCCCCc-----c-----cCCHHHHHHHHHhCCCCC----------CEEEEE
Confidence 678774 5554333 334578887775431122 1 158999999998765431 223344
Q ss_pred EeeehhcHHHHHHHHhC-CCCeEEEecc
Q psy7344 198 CPQMVAKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 198 vK~r~~~~~~~~~~l~~-G~~~itih~R 224 (240)
+. .+..++.+.++. |.|.|.+||=
T Consensus 60 ~~---~~~~~i~~~~~~~~~d~vQLHG~ 84 (207)
T PRK13958 60 VN---PDLTTIEHILSNTSINTIQLHGT 84 (207)
T ss_pred eC---CCHHHHHHHHHhCCCCEEEECCC
Confidence 42 345667778888 9999999993
No 236
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=84.65 E-value=10 Score=32.22 Aligned_cols=103 Identities=9% Similarity=0.005 Sum_probs=55.7
Q ss_pred ChhhHHHhhhcccCCCCceeEEe---ecCCH--HHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHH
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMF---CGNDS--KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 173 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi---~g~d~--~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~i 173 (240)
.|.++...+..++.....+...+ .|..+ ....++.+.++.|+|.||+-+- +|.....+++.+.+-
T Consensus 38 ~p~~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdEiDvv~n----------~g~l~~g~~~~v~~e 107 (211)
T TIGR00126 38 NPSYVPLAKELLKGTEVRICTVVGFPLGASTTDVKLYETKEAIKYGADEVDMVIN----------IGALKDGNEEVVYDD 107 (211)
T ss_pred CHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEeecc----------hHhhhCCcHHHHHHH
Confidence 35556555444332223332222 23333 2355566667789999996433 122223588888777
Q ss_pred HHHhhhccccccCCCCCCCCeeeEEeee---h--hcHHHHHHHHhC-CCCeEEE
Q psy7344 174 VYSPNMVHFVIAEPHCDGNDINIGCPQM---V--AKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 174 v~~~~~~~~~i~~~~~~~~~~pvsvK~r---~--~~~~~~~~~l~~-G~~~iti 221 (240)
++.+.+.. ..+|+.+=+- + +.....++...+ |+|+|--
T Consensus 108 i~~i~~~~----------~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKT 151 (211)
T TIGR00126 108 IRAVVEAC----------AGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKT 151 (211)
T ss_pred HHHHHHHc----------CCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 77777651 1233333111 2 234567777788 9999854
No 237
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=84.55 E-value=8.3 Score=33.68 Aligned_cols=73 Identities=8% Similarity=-0.038 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcH
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKR 205 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~ 205 (240)
.+..+.|+..++ |+++|-+..- ...+ ..+++.+..+. .. +++||..|--+.+.
T Consensus 70 ~~~~~~A~~~~~~GA~aisvlte-------~~~f----~g~~~~l~~v~----~~-----------v~iPvl~kdfi~~~ 123 (260)
T PRK00278 70 FDPVEIAKAYEAGGAACLSVLTD-------ERFF----QGSLEYLRAAR----AA-----------VSLPVLRKDFIIDP 123 (260)
T ss_pred CCHHHHHHHHHhCCCeEEEEecc-------cccC----CCCHHHHHHHH----Hh-----------cCCCEEeeeecCCH
Confidence 355788888776 7888855332 1112 23455555544 34 67899987766666
Q ss_pred HHHHHHHhCCCCeEEEeccc
Q psy7344 206 GHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 206 ~~~~~~l~~G~~~itih~R~ 225 (240)
.+.....+.|||+|++.++.
T Consensus 124 ~qi~~a~~~GAD~VlLi~~~ 143 (260)
T PRK00278 124 YQIYEARAAGADAILLIVAA 143 (260)
T ss_pred HHHHHHHHcCCCEEEEEecc
Confidence 65444444499999999887
No 238
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=84.40 E-value=3.9 Score=35.57 Aligned_cols=85 Identities=14% Similarity=0.092 Sum_probs=54.9
Q ss_pred CCHHHHHHHHH-HHccCCCEEEecCCCchhhhhccccccccc---CCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEe
Q psy7344 124 NDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQ---DDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCP 199 (240)
Q Consensus 124 ~d~~~~~~aa~-~le~~~d~Idin~gCP~~~~~~~g~G~~l~---~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK 199 (240)
.|.+...+.++ ++++|+|.||||.+-..+ |+... ..++.+..+++.+++. .++|+++-
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p-------~~~~~~~~~E~~rl~~~v~~l~~~-----------~~~piSID 82 (258)
T cd00423 21 LSLDKALEHARRMVEEGADIIDIGGESTRP-------GAEPVSVEEELERVIPVLRALAGE-----------PDVPISVD 82 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCC-------CCCcCCHHHHHHHHHHHHHHHHhc-----------CCCeEEEe
Confidence 46777666555 457799999999873222 11111 2345566667766654 47788887
Q ss_pred eeh--------------------hcH-HHHHHHHhC-CCCeEEEecccc
Q psy7344 200 QMV--------------------AKR-GHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 200 ~r~--------------------~~~-~~~~~~l~~-G~~~itih~R~~ 226 (240)
..- ... .++++.+.+ |+..|.+|.+..
T Consensus 83 T~~~~v~~aaL~~g~~iINdis~~~~~~~~~~l~~~~~~~vV~m~~~~~ 131 (258)
T cd00423 83 TFNAEVAEAALKAGADIINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGT 131 (258)
T ss_pred CCcHHHHHHHHHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEEECcCCC
Confidence 760 111 467787888 999999997653
No 239
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=84.19 E-value=5 Score=34.06 Aligned_cols=83 Identities=12% Similarity=0.012 Sum_probs=52.5
Q ss_pred EEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEE
Q psy7344 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGC 198 (240)
Q Consensus 119 vqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsv 198 (240)
+-+-..+.++..+.++.+...++.|.+|... - .. +|. +.+.++++.+++. . .||.+
T Consensus 5 vALD~~~~~~a~~i~~~~~~~v~~iKvG~~l--~--~~--~G~------~~l~~~i~~l~~~-----------~-~~I~~ 60 (226)
T PF00215_consen 5 VALDPTDLEEALRIADELGDYVDIIKVGTPL--F--LA--YGL------EALPEIIEELKER-----------G-KPIFL 60 (226)
T ss_dssp EEE-SSSHHHHHHHHHHHGGGSSEEEEEHHH--H--HH--HCH------HHHHHHHHHHHHT-----------T-SEEEE
T ss_pred EEeCCCCHHHHHHHHHHhcCcceEEEEChHH--H--hc--CCh------hhHHHHHHHHHHh-----------c-CCEee
Confidence 3333356667777777777788999997652 1 11 222 2667888888775 2 56654
Q ss_pred --eee-hhcH-HHHHH---HHhC-CCCeEEEeccc
Q psy7344 199 --PQM-VAKR-GHYGA---YLQD-DWPLLTELGKM 225 (240)
Q Consensus 199 --K~r-~~~~-~~~~~---~l~~-G~~~itih~R~ 225 (240)
|+- +.+| ..+++ .+.+ |+|.+|+|+-.
T Consensus 61 D~K~~Dig~t~~~~~~~~~~~~~~gaD~vTv~~~~ 95 (226)
T PF00215_consen 61 DLKLGDIGNTVARYAEAGFAAFELGADAVTVHPFA 95 (226)
T ss_dssp EEEE-SSHHHHHHHHHSCHHHHTTTESEEEEEGTT
T ss_pred eeeecccchHHHHHHHHhhhhhcCCCcEEEEeccC
Confidence 444 4444 34554 5677 99999999976
No 240
>PRK09206 pyruvate kinase; Provisional
Probab=84.15 E-value=7.6 Score=37.05 Aligned_cols=93 Identities=13% Similarity=0.050 Sum_probs=59.7
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc--cCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l--~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
..++++|| .+++-...+-+.++. +|+|++++| . .|..+ ..-|...+++++..++.
T Consensus 214 ~~~iiaKI--Et~eav~nldeIl~~-~DgImVaRG---D------Lgvelg~e~vp~~qk~ii~~~~~~----------- 270 (470)
T PRK09206 214 NIQIISKI--ENQEGLNNFDEILEA-SDGIMVARG---D------LGVEIPVEEVIFAQKMMIEKCNRA----------- 270 (470)
T ss_pred CceEEEEE--CCHHHHHhHHHHHHh-CCEEEECcc---h------hhhhcCHHHHHHHHHHHHHHHHHc-----------
Confidence 45788888 444444444444433 899999988 1 12222 33466667777776664
Q ss_pred CCeeeEEeee-hh-----------cHHHHHHHHhCCCCeEEEecccccccC
Q psy7344 192 NDINIGCPQM-VA-----------KRGHYGAYLQDDWPLLTELGKMAMLVG 230 (240)
Q Consensus 192 ~~~pvsvK~r-~~-----------~~~~~~~~l~~G~~~itih~R~~~~~~ 230 (240)
..|+.+=+. ++ ..-|.+.++.+|+|++.+-|-|..-+|
T Consensus 271 -gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavMLS~ETA~G~y 320 (470)
T PRK09206 271 -RKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKY 320 (470)
T ss_pred -CCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEEechhcCCCC
Confidence 456666444 22 345777788889999999888877654
No 241
>PRK00208 thiG thiazole synthase; Reviewed
Probab=84.11 E-value=12 Score=32.75 Aligned_cols=74 Identities=14% Similarity=0.115 Sum_probs=47.4
Q ss_pred eecCCHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEe
Q psy7344 121 FCGNDSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCP 199 (240)
Q Consensus 121 i~g~d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK 199 (240)
.+..|+... +.++ -||+.|+- .|-|. |.|.. +.+|+.++.+++. .++||.+-
T Consensus 129 yc~~d~~~a----k~l~~~G~~~vmP-lg~pI------Gsg~g-i~~~~~i~~i~e~---------------~~vpVIve 181 (250)
T PRK00208 129 YCTDDPVLA----KRLEEAGCAAVMP-LGAPI------GSGLG-LLNPYNLRIIIEQ---------------ADVPVIVD 181 (250)
T ss_pred EeCCCHHHH----HHHHHcCCCEeCC-CCcCC------CCCCC-CCCHHHHHHHHHh---------------cCCeEEEe
Confidence 455666533 3333 37777732 22122 23332 4679988777764 35688888
Q ss_pred eehhcHHHHHHHHhCCCCeEEE
Q psy7344 200 QMVAKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 200 ~r~~~~~~~~~~l~~G~~~iti 221 (240)
-++....+..++++.|+|++.+
T Consensus 182 aGI~tpeda~~AmelGAdgVlV 203 (250)
T PRK00208 182 AGIGTPSDAAQAMELGADAVLL 203 (250)
T ss_pred CCCCCHHHHHHHHHcCCCEEEE
Confidence 8888888888888889999876
No 242
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=83.98 E-value=3.7 Score=36.78 Aligned_cols=82 Identities=9% Similarity=-0.003 Sum_probs=50.0
Q ss_pred hhhhcccceee-eCChh---hHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhccccc
Q psy7344 86 VAKRGHYGAYL-QDDWP---LLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYG 160 (240)
Q Consensus 86 i~~~g~~ga~l-~~d~e---li~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G 160 (240)
+...|.+|.+. +.+-| +++..+..+ ....|+++.+...+.++..+.++..++ |+|+|++-. |.-
T Consensus 46 i~v~GstGE~~~Lt~eEr~~v~~~~~~~~-~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~--P~y-------- 114 (309)
T cd00952 46 ILTMGTFGECATLTWEEKQAFVATVVETV-AGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGR--PMW-------- 114 (309)
T ss_pred EEECcccccchhCCHHHHHHHHHHHHHHh-CCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECC--CcC--------
Confidence 33445667654 22222 233333333 335799999988899999999999876 899999843 321
Q ss_pred ccccCCHHHHHHHHHHhhhc
Q psy7344 161 AYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 161 ~~l~~~p~~i~~iv~~~~~~ 180 (240)
...+.+.+.+..+.+.++
T Consensus 115 --~~~~~~~l~~yf~~va~a 132 (309)
T cd00952 115 --LPLDVDTAVQFYRDVAEA 132 (309)
T ss_pred --CCCCHHHHHHHHHHHHHh
Confidence 123455665655555554
No 243
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=83.89 E-value=8.7 Score=33.33 Aligned_cols=98 Identities=9% Similarity=0.011 Sum_probs=63.0
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
+.++++++...+ ++-+|++|+ +.+...+.+.++.|++.|-++. ....||+.++++.+..-
T Consensus 63 n~~~i~~i~~~~-----~~~vQvGGG-IRs~~~v~~ll~~G~~rViiGt--------------~av~~p~~v~~~~~~~g 122 (241)
T COG0106 63 NLEAIKEILEAT-----DVPVQVGGG-IRSLEDVEALLDAGVARVIIGT--------------AAVKNPDLVKELCEEYG 122 (241)
T ss_pred cHHHHHHHHHhC-----CCCEEeeCC-cCCHHHHHHHHHCCCCEEEEec--------------ceecCHHHHHHHHHHcC
Confidence 457888887653 455788654 4444455666677766665533 34689999999998754
Q ss_pred hccccccCCCCCCCCeeeEEeee------h-----hcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 179 MVHFVIAEPHCDGNDINIGCPQM------V-----AKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 179 ~~~~~i~~~~~~~~~~pvsvK~r------~-----~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
.. .-+-+.+|.. | -+..++++.+++ |+..+.+|.=++.
T Consensus 123 ~r-----------ivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~D 172 (241)
T COG0106 123 DR-----------IVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRD 172 (241)
T ss_pred Cc-----------EEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEEecccc
Confidence 32 1122333332 2 156899999999 9999988754443
No 244
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=83.55 E-value=7.2 Score=36.02 Aligned_cols=95 Identities=12% Similarity=-0.062 Sum_probs=51.6
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc--------cCCHHHHHHHHHHhhhcccccc
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--------QDDWPLLTNLVYSPNMVHFVIA 185 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l--------~~~p~~i~~iv~~~~~~~~~i~ 185 (240)
..||.+++..++..+...+. ..+.++|.|-|.-+ .+|+|++= +.-...+.++.+.+.+.
T Consensus 203 ~~pVgvKl~~~~~~~~~~~~-~~~ag~D~ItIDG~-------~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~----- 269 (368)
T PF01645_consen 203 GKPVGVKLVAGRGVEDIAAG-AAKAGADFITIDGA-------EGGTGAAPLTSMDHVGLPTEYALARAHQALVKN----- 269 (368)
T ss_dssp TSEEEEEEE-STTHHHHHHH-HHHTT-SEEEEE-T-------T---SSEECCHHHHC---HHHHHHHHHHHHHCT-----
T ss_pred CCcEEEEECCCCcHHHHHHh-hhhccCCEEEEeCC-------CCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHc-----
Confidence 47999999877666544333 44557899888544 35565532 11133345555555442
Q ss_pred CCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 186 EPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 186 ~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
+ +. .++.+.+-..+.+..++++++..|||++.+ ||.
T Consensus 270 -g-lr-~~V~Li~sGgl~t~~dv~kalaLGAD~v~i-gt~ 305 (368)
T PF01645_consen 270 -G-LR-DRVSLIASGGLRTGDDVAKALALGADAVYI-GTA 305 (368)
T ss_dssp -T--C-CCSEEEEESS--SHHHHHHHHHCT-SEEE--SHH
T ss_pred -C-CC-CceEEEEeCCccCHHHHHHHHhcCCCeeEe-cch
Confidence 1 11 134555555567778999999999999987 664
No 245
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=83.19 E-value=3.9 Score=35.70 Aligned_cols=60 Identities=15% Similarity=0.044 Sum_probs=39.0
Q ss_pred hhhhcccceeeeCCh----hhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEec
Q psy7344 86 VAKRGHYGAYLQDDW----PLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDIN 146 (240)
Q Consensus 86 i~~~g~~ga~l~~d~----eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin 146 (240)
+..-|.+|.+..-.+ ++++....... ...|+++.+.+.+..+..+.++..++ |+|+|++-
T Consensus 35 i~~~GstGE~~~ls~~Er~~l~~~~~~~~~-~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~ 99 (281)
T cd00408 35 LVVLGTTGEAPTLTDEERKEVIEAVVEAVA-GRVPVIAGVGANSTREAIELARHAEEAGADGVLVV 99 (281)
T ss_pred EEECCCCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEC
Confidence 333455666442222 23333333332 34789999988888889999998876 89999993
No 246
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=83.01 E-value=2.6 Score=38.29 Aligned_cols=100 Identities=14% Similarity=0.034 Sum_probs=56.6
Q ss_pred CCCceeEEeecCC-------HHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccc
Q psy7344 113 HMCGHSLMFCGND-------SKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVI 184 (240)
Q Consensus 113 ~~~pvivqi~g~d-------~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i 184 (240)
.+.|+.+.|...+ .++..+++++++. +.|.+++..+.-........... ....+.......+.+++.
T Consensus 215 ~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~ik~~---- 289 (341)
T PF00724_consen 215 PDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPP-FDFEPGYNLDLAEAIKKA---- 289 (341)
T ss_dssp GGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTT-TTTTTTTTHHHHHHHHHH----
T ss_pred CCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccc-cccccchhhhhhhhhhhh----
Confidence 3567888886532 3555566777766 56777654443221111000101 111111112333444555
Q ss_pred cCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 185 AEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 185 ~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+++||.+-.++.+.....+.+++ .+|.|.+ ||.
T Consensus 290 -------~~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~-gR~ 323 (341)
T PF00724_consen 290 -------VKIPVIGVGGIRTPEQAEKALEEGKADLVAM-GRP 323 (341)
T ss_dssp -------HSSEEEEESSTTHHHHHHHHHHTTSTSEEEE-SHH
T ss_pred -------cCceEEEEeeecchhhhHHHHhcCCceEeec-cHH
Confidence 56788887888777667788888 8999998 775
No 247
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=82.49 E-value=3.9 Score=38.07 Aligned_cols=78 Identities=10% Similarity=-0.005 Sum_probs=47.6
Q ss_pred cCCHHHHHHHHHHHccC-CCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee
Q psy7344 123 GNDSKNLTEAAKLAEPH-CDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM 201 (240)
Q Consensus 123 g~d~~~~~~aa~~le~~-~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r 201 (240)
..|.++..+.++.+.+. .+.+++|.- .-. . .-++.++++. +. +.+.++.+-+.
T Consensus 181 ~~~~~~A~~i~~~l~~~~~~~iKvG~~--L~~--~--------~G~~iVk~Lr----~~----------~~~~~I~~DLK 234 (391)
T PRK13307 181 LPDLEEVERVLSQLPKSDHIIIEAGTP--LIK--K--------FGLEVISKIR----EV----------RPDAFIVADLK 234 (391)
T ss_pred CCCHHHHHHHHHhcccccceEEEECHH--HHH--H--------hCHHHHHHHH----Hh----------CCCCeEEEEec
Confidence 34666666666666543 556666443 211 1 1134444444 32 04567888887
Q ss_pred hhcHHHH-HHHHhC-CCCeEEEecccc
Q psy7344 202 VAKRGHY-GAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 202 ~~~~~~~-~~~l~~-G~~~itih~R~~ 226 (240)
+.+...+ ++.+.+ |+|.+|+|+-..
T Consensus 235 ~~Di~~~vv~~~a~aGAD~vTVH~ea~ 261 (391)
T PRK13307 235 TLDTGNLEARMAADATADAVVISGLAP 261 (391)
T ss_pred ccChhhHHHHHHHhcCCCEEEEeccCC
Confidence 6666565 888888 999999998653
No 248
>KOG2550|consensus
Probab=82.45 E-value=3.2 Score=38.73 Aligned_cols=89 Identities=11% Similarity=0.064 Sum_probs=58.9
Q ss_pred EeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEe
Q psy7344 120 MFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCP 199 (240)
Q Consensus 120 qi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK 199 (240)
++.++|.-+.+.+..++..|+|++-+++||-+..+...-++.. -..-..+.++.+.... ..+|+.+-
T Consensus 294 ~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~G-rpQ~TAVy~va~~A~q------------~gvpviAD 360 (503)
T KOG2550|consen 294 QIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMACG-RPQGTAVYKVAEFANQ------------FGVPCIAD 360 (503)
T ss_pred eeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeeecc-CCcccchhhHHHHHHh------------cCCceeec
Confidence 6667888888888889999999999999987765554322221 1222344555554443 35577766
Q ss_pred eehhcHHHHHHHHhCCCCeEEE
Q psy7344 200 QMVAKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 200 ~r~~~~~~~~~~l~~G~~~iti 221 (240)
.-+.+.-.++++|..|++.+.+
T Consensus 361 GGiq~~Ghi~KAl~lGAstVMm 382 (503)
T KOG2550|consen 361 GGIQNVGHVVKALGLGASTVMM 382 (503)
T ss_pred CCcCccchhHhhhhcCchhhee
Confidence 6666666777777668876654
No 249
>PRK01060 endonuclease IV; Provisional
Probab=82.37 E-value=7.4 Score=33.75 Aligned_cols=84 Identities=11% Similarity=-0.219 Sum_probs=49.2
Q ss_pred HHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc-cccccCCCCCCCCeeeEEeee-----
Q psy7344 129 LTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV-HFVIAEPHCDGNDINIGCPQM----- 201 (240)
Q Consensus 129 ~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~-~~~i~~~~~~~~~~pvsvK~r----- 201 (240)
+.++++.+.+ |+|+|+|..+.|.... +. ..+++.++++.+.+.+. +.+. .+ ....|....+-
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~-----~~--~~~~~~~~~lk~~~~~~gl~~~---~~-~~h~~~~~nl~~~d~~ 82 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWK-----RK--PLEELNIEAFKAACEKYGISPE---DI-LVHAPYLINLGNPNKE 82 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCc-----CC--CCCHHHHHHHHHHHHHcCCCCC---ce-EEecceEecCCCCCHH
Confidence 5567777754 9999999999886532 11 13777888888777653 1100 00 00001111111
Q ss_pred -----hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 -----VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 -----~~~~~~~~~~l~~-G~~~itih~ 223 (240)
++.+.+.++...+ |++.|++|.
T Consensus 83 ~r~~s~~~~~~~i~~A~~lga~~vv~h~ 110 (281)
T PRK01060 83 ILEKSRDFLIQEIERCAALGAKLLVFHP 110 (281)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 2234566667788 999999985
No 250
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=82.16 E-value=6.8 Score=34.21 Aligned_cols=106 Identities=8% Similarity=-0.138 Sum_probs=57.0
Q ss_pred ChhhHHHhhhcccCCCCceeEEee-cCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccc--cCCHHHHHHHH
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFC-GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLV 174 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~-g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l--~~~p~~i~~iv 174 (240)
+.+++..+- ....|++++-+ ..+++++..+++.+.. |..-|.+---|- .+|.... ..|...+.
T Consensus 111 n~~LL~~va----~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~------~~Y~~~~~n~~dl~ai~--- 177 (250)
T PRK13397 111 NFEFLKTLS----HIDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGV------RGYDVETRNMLDIMAVP--- 177 (250)
T ss_pred CHHHHHHHH----ccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEcccc------CCCCCccccccCHHHHH---
Confidence 345554443 23589999976 6799999999999865 544444322121 1122110 12333333
Q ss_pred HHhhhccccccCCCCCCCCeeeEEeee----h-hcHHHHHHHHhC-CCC--eEEEeccccccc
Q psy7344 175 YSPNMVHFVIAEPHCDGNDINIGCPQM----V-AKRGHYGAYLQD-DWP--LLTELGKMAMLV 229 (240)
Q Consensus 175 ~~~~~~~~~i~~~~~~~~~~pvsvK~r----~-~~~~~~~~~l~~-G~~--~itih~R~~~~~ 229 (240)
.+++. ...||.+--. . +-...++++... |++ .|-.|.--.+..
T Consensus 178 -~lk~~-----------~~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~~P~~A~ 228 (250)
T PRK13397 178 -IIQQK-----------TDLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHPDPDHAL 228 (250)
T ss_pred -HHHHH-----------hCCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecCCccccc
Confidence 33332 3456554333 1 223467788888 999 555565544443
No 251
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=82.15 E-value=12 Score=32.39 Aligned_cols=80 Identities=14% Similarity=0.086 Sum_probs=50.8
Q ss_pred CceeEEeecCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
.|+...+...+++++.+.++.+ +.|+..+-+..| .+++.-.+.++++++.+ + .+
T Consensus 75 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg----------------~~~~~d~~~v~~vr~~~---g------~~ 129 (265)
T cd03315 75 VRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVG----------------RDPARDVAVVAALREAV---G------DD 129 (265)
T ss_pred eEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecC----------------CCHHHHHHHHHHHHHhc---C------CC
Confidence 5666666556777777655544 568888888665 23444456677777652 0 13
Q ss_pred eeeEEe--eeh--hcHHHHHHHHhC-CCCeE
Q psy7344 194 INIGCP--QMV--AKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 194 ~pvsvK--~r~--~~~~~~~~~l~~-G~~~i 219 (240)
+++.+. .++ ++..++++.|++ |+++|
T Consensus 130 ~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i 160 (265)
T cd03315 130 AELRVDANRGWTPKQAIRALRALEDLGLDYV 160 (265)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHhcCCCEE
Confidence 344433 333 567889999999 99887
No 252
>PRK06739 pyruvate kinase; Validated
Probab=81.63 E-value=16 Score=33.59 Aligned_cols=93 Identities=13% Similarity=-0.026 Sum_probs=58.3
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc--cCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l--~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
..+++.+| .+.+-...+-+.++ .+||||+.+|= .|-.+ -.=|..=++|++..+..
T Consensus 207 ~~~IiaKI--E~~~av~nl~eI~~-~sDgimVARGD---------Lgve~~~e~vp~~Qk~Ii~~c~~~----------- 263 (352)
T PRK06739 207 SPNLIAKI--ETMEAIENFQDICK-EADGIMIARGD---------LGVELPYQFIPLLQKMMIQECNRT----------- 263 (352)
T ss_pred CCcEEEEE--CCHHHHHHHHHHHH-hcCEEEEECcc---------cccccCHHHHHHHHHHHHHHHHHh-----------
Confidence 45788887 44333333333333 37999999881 22222 23355557777776664
Q ss_pred CCeeeEEeee-hh-----------cHHHHHHHHhCCCCeEEEecccccccC
Q psy7344 192 NDINIGCPQM-VA-----------KRGHYGAYLQDDWPLLTELGKMAMLVG 230 (240)
Q Consensus 192 ~~~pvsvK~r-~~-----------~~~~~~~~l~~G~~~itih~R~~~~~~ 230 (240)
..||.+=+. ++ ..-+.+.++.+|+|++.+-+-|..-+|
T Consensus 264 -gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ETA~G~y 313 (352)
T PRK06739 264 -NTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSAESASGEH 313 (352)
T ss_pred -CCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcccccCCCC
Confidence 557776555 21 345777778889999999888877654
No 253
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=81.61 E-value=28 Score=31.80 Aligned_cols=129 Identities=12% Similarity=0.017 Sum_probs=73.8
Q ss_pred ecccccccCCCccccccCchhhhhhhhcccceeee-CChhhHHHhhhcccCC-CCceeEEeecCCHHHHHHHHHHHcc--
Q psy7344 63 MGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQ-DDWPLLTELGFKTRSH-MCGHSLMFCGNDSKNLTEAAKLAEP-- 138 (240)
Q Consensus 63 vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l~-~d~eli~~i~~~~~~~-~~pvivqi~g~d~~~~~~aa~~le~-- 138 (240)
.+.+.+-++|...++..+- ..++.+|..+..-. .+.+--.+.+...++. ..-+.+.+ |-.++++..+.++++.
T Consensus 45 ~giPii~AnMdTV~~~~mA--~~la~~g~~~~iHk~~~~e~~~~fv~~~~~~~~~~~~vav-G~~~~d~er~~~L~~~~~ 121 (346)
T PRK05096 45 SGVPIIAANMDTVGTFEMA--KALASFDILTAVHKHYSVEEWAAFVNNSSADVLKHVMVST-GTSDADFEKTKQILALSP 121 (346)
T ss_pred cCCceEecCCCccccHHHH--HHHHHCCCeEEEecCCCHHHHHHHHHhccccccceEEEEe-cCCHHHHHHHHHHHhcCC
Confidence 3455667899999988884 77888876665332 2233212222222211 11233333 3355777777777774
Q ss_pred CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCC
Q psy7344 139 HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWP 217 (240)
Q Consensus 139 ~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~ 217 (240)
++|.|-|-.. |+ +-+.+-++++.+++.. .+++|.+= -+ -|.+.++.|.+ |||
T Consensus 122 g~D~iviD~A-------hG--------hs~~~i~~ik~ik~~~----------P~~~vIaG-NV-~T~e~a~~Li~aGAD 174 (346)
T PRK05096 122 ALNFICIDVA-------NG--------YSEHFVQFVAKAREAW----------PDKTICAG-NV-VTGEMVEELILSGAD 174 (346)
T ss_pred CCCEEEEECC-------CC--------cHHHHHHHHHHHHHhC----------CCCcEEEe-cc-cCHHHHHHHHHcCCC
Confidence 6888655444 22 4456667788877762 22333320 01 34568888989 999
Q ss_pred eEEE
Q psy7344 218 LLTE 221 (240)
Q Consensus 218 ~iti 221 (240)
.|-+
T Consensus 175 ~vKV 178 (346)
T PRK05096 175 IVKV 178 (346)
T ss_pred EEEE
Confidence 9864
No 254
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=81.58 E-value=11 Score=31.04 Aligned_cols=82 Identities=17% Similarity=0.030 Sum_probs=51.2
Q ss_pred eEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeE
Q psy7344 118 SLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIG 197 (240)
Q Consensus 118 ivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvs 197 (240)
++-|--.+.++..+.++.+.++++.|+++.- ... . .| ++.++.+.+. . .++|+.
T Consensus 4 ~~a~d~~~~~~~~~~~~~l~~~i~~ieig~~--~~~--~--~g------~~~i~~i~~~---~-----------~~~~i~ 57 (202)
T cd04726 4 QVALDLLDLEEALELAKKVPDGVDIIEAGTP--LIK--S--EG------MEAVRALREA---F-----------PDKIIV 57 (202)
T ss_pred EEEEcCCCHHHHHHHHHHhhhcCCEEEcCCH--HHH--H--hC------HHHHHHHHHH---C-----------CCCEEE
Confidence 3344345788888888888777999999433 211 1 11 4444444432 1 356777
Q ss_pred EeeehhcH-HHHHHHHhC-CCCeEEEeccc
Q psy7344 198 CPQMVAKR-GHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 198 vK~r~~~~-~~~~~~l~~-G~~~itih~R~ 225 (240)
+=+.+.+. ..+++.+.+ |++.+++|+..
T Consensus 58 ~~~~v~~~~~~~~~~~~~aGad~i~~h~~~ 87 (202)
T cd04726 58 ADLKTADAGALEAEMAFKAGADIVTVLGAA 87 (202)
T ss_pred EEEEeccccHHHHHHHHhcCCCEEEEEeeC
Confidence 64443333 245688888 99999999975
No 255
>PTZ00300 pyruvate kinase; Provisional
Probab=81.52 E-value=9.6 Score=36.21 Aligned_cols=93 Identities=11% Similarity=0.040 Sum_probs=59.9
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc--cCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l--~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
..+++.|| .+++-...+-+.+ +++|||++++| . .|..+ ..-|...++|++..++.
T Consensus 188 ~~~IiaKI--Et~eav~nldeI~-~~~DgImVaRG---D------Lgvei~~e~vp~~Qk~Ii~~~~~~----------- 244 (454)
T PTZ00300 188 DIMIICKI--ENHQGVQNIDSII-EESDGIMVARG---D------LGVEIPAEKVVVAQKILISKCNVA----------- 244 (454)
T ss_pred CceEEEEE--CCHHHHHhHHHHH-HhCCEEEEecc---h------hhhhcChHHHHHHHHHHHHHHHHc-----------
Confidence 45788888 5555444444444 67999999988 1 22222 23355666777766654
Q ss_pred CCeeeEEeee-hh-----------cHHHHHHHHhCCCCeEEEecccccccC
Q psy7344 192 NDINIGCPQM-VA-----------KRGHYGAYLQDDWPLLTELGKMAMLVG 230 (240)
Q Consensus 192 ~~~pvsvK~r-~~-----------~~~~~~~~l~~G~~~itih~R~~~~~~ 230 (240)
..|+.+=+. ++ ..-|.+.++.+|+|++.+-+-|..-+|
T Consensus 245 -gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~y 294 (454)
T PTZ00300 245 -GKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKY 294 (454)
T ss_pred -CCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCC
Confidence 456665444 22 345788888889999999888876554
No 256
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=81.32 E-value=11 Score=32.64 Aligned_cols=94 Identities=12% Similarity=-0.141 Sum_probs=53.7
Q ss_pred CceeEEee---cCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh-ccccccCCCC
Q psy7344 115 CGHSLMFC---GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM-VHFVIAEPHC 189 (240)
Q Consensus 115 ~pvivqi~---g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~-~~~~i~~~~~ 189 (240)
.|+++-+- ++++++..+.++.+.+ |+++|.|-=+. +.+.. ++++++ .++||+..+.
T Consensus 74 ~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~~------------------~~~~~-i~ai~~a~i~ViaRtd~ 134 (240)
T cd06556 74 ALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEGGE------------------WHIET-LQMLTAAAVPVIAHTGL 134 (240)
T ss_pred CCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcCcH------------------HHHHH-HHHHHHcCCeEEEEeCC
Confidence 58888873 3455777777776654 88999885441 22222 333333 4556543332
Q ss_pred CCCCee----eEEeee----hhcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 190 DGNDIN----IGCPQM----VAKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 190 ~~~~~p----vsvK~r----~~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
.....- ..++.| .+..++-++.+++ |||.|.+++.+.+
T Consensus 135 ~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~~~e 181 (240)
T cd06556 135 TPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECVPVE 181 (240)
T ss_pred chhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCCCHH
Confidence 100000 012222 4456777888999 9999999987443
No 257
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=81.28 E-value=11 Score=31.70 Aligned_cols=83 Identities=10% Similarity=-0.013 Sum_probs=58.2
Q ss_pred EEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeE
Q psy7344 119 LMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIG 197 (240)
Q Consensus 119 vqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvs 197 (240)
+.+.+.+.+++...++.++. ++|.|++-.-+-.. .+.+.+.+.+..++.. .++|+.
T Consensus 2 v~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~------------~~~~~~~~~l~~lr~~-----------~~~piI 58 (224)
T PF01487_consen 2 VPLTGSTLEELLAELEEAESSGADAVELRLDYLEN------------DSAEDISEQLAELRRS-----------LDLPII 58 (224)
T ss_dssp EEE--SSHHHHHHHHHHHHHTTTSEEEEEGGGSTT------------TSHHHHHHHHHHHHHH-----------CTSEEE
T ss_pred EeeCCCCHHHHHHHHHHHHhcCCCEEEEEeccccc------------cChHHHHHHHHHHHHh-----------CCCCEE
Confidence 45667888888777777766 89999997663111 4677888888888877 677988
Q ss_pred Eeeeh-----------hcHHHHHHHHhC-CCCeEEEecc
Q psy7344 198 CPQMV-----------AKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 198 vK~r~-----------~~~~~~~~~l~~-G~~~itih~R 224 (240)
+-+|. +...++.+.+.+ |+++|.|--.
T Consensus 59 ~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~ 97 (224)
T PF01487_consen 59 FTVRTKEEGGRFQGSEEEYLELLERAIRLGPDYIDIELD 97 (224)
T ss_dssp EE--BGGGTSSBSS-HHHHHHHHHHHHHHTSSEEEEEGG
T ss_pred EEecccccCCCCcCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 88882 234667777778 9999998665
No 258
>PLN02765 pyruvate kinase
Probab=81.15 E-value=15 Score=35.62 Aligned_cols=92 Identities=14% Similarity=0.074 Sum_probs=58.2
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc--cCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l--~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
..+++.+| .+++-...+-+.++ .+||||+.+|= .|..+ -.=|..=++|++..+..
T Consensus 249 ~~~IiaKI--E~~~av~nl~eIi~-~sDgIMVARGD---------LGvEip~e~vp~~QK~iI~~c~~~----------- 305 (526)
T PLN02765 249 QTQIFAKI--ENVEGLTHFDEILQ-EADGIILSRGN---------LGIDLPPEKVFLFQKAALYKCNMA----------- 305 (526)
T ss_pred CCcEEEEE--CCHHHHHHHHHHHH-hcCEEEEecCc---------cccccCHHHhHHHHHHHHHHHHHh-----------
Confidence 46788888 44443333333333 47999999981 22222 22355556777766654
Q ss_pred CCeeeEEeee-hh-----------cHHHHHHHHhCCCCeEEEecccccccC
Q psy7344 192 NDINIGCPQM-VA-----------KRGHYGAYLQDDWPLLTELGKMAMLVG 230 (240)
Q Consensus 192 ~~~pvsvK~r-~~-----------~~~~~~~~l~~G~~~itih~R~~~~~~ 230 (240)
..||.+ +. ++ ..-|.+.++.+|+|++.+-|-|..-+|
T Consensus 306 -gKPVI~-TQmLeSMi~np~PTRAEvsDVaNAV~DGaDavMLSgETA~G~y 354 (526)
T PLN02765 306 -GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGADAILLGAETLRGLY 354 (526)
T ss_pred -CCCeEE-ehhhhHHhhCCCCChhhHHHHHHHHHhCCCEEEecchhcCCCC
Confidence 568877 44 22 245777788889999999888877654
No 259
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=80.91 E-value=4.2 Score=35.80 Aligned_cols=63 Identities=14% Similarity=0.052 Sum_probs=44.6
Q ss_pred CCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 113 HMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 113 ~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
...|+++.+.+.+.++..+.++.+++ |+|++++-. |.- ...+.+.+.+..+.+.+.
T Consensus 69 ~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~--P~~----------~~~s~~~l~~y~~~ia~~----------- 125 (289)
T PF00701_consen 69 GRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIP--PYY----------FKPSQEELIDYFRAIADA----------- 125 (289)
T ss_dssp TSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEE--STS----------SSCCHHHHHHHHHHHHHH-----------
T ss_pred CceEEEecCcchhHHHHHHHHHHHhhcCceEEEEec--ccc----------ccchhhHHHHHHHHHHhh-----------
Confidence 34799999999999999999999876 899999832 322 123566666666666666
Q ss_pred CCeeeEE
Q psy7344 192 NDINIGC 198 (240)
Q Consensus 192 ~~~pvsv 198 (240)
+++|+.+
T Consensus 126 ~~~pi~i 132 (289)
T PF00701_consen 126 TDLPIII 132 (289)
T ss_dssp SSSEEEE
T ss_pred cCCCEEE
Confidence 5667664
No 260
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=80.83 E-value=7.3 Score=32.27 Aligned_cols=81 Identities=16% Similarity=0.075 Sum_probs=48.0
Q ss_pred EEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEE
Q psy7344 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGC 198 (240)
Q Consensus 119 vqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsv 198 (240)
+-+-..+.++..+.++.++.+.+.|+++...-.. .-++.++++.+... . ..+.+..
T Consensus 4 ~alD~~~~~~a~~~~~~l~~~v~~iev~~~l~~~------------~g~~~i~~l~~~~~-~-----------~~i~~d~ 59 (206)
T TIGR03128 4 LALDLLDIEEALELAEKVADYVDIIEIGTPLIKN------------EGIEAVKEMKEAFP-D-----------RKVLADL 59 (206)
T ss_pred EEecCCCHHHHHHHHHHcccCeeEEEeCCHHHHH------------hCHHHHHHHHHHCC-C-----------CEEEEEE
Confidence 3444568888889999886678999995331101 12344545544311 1 2233444
Q ss_pred eeehhcHHHH-HHHHhC-CCCeEEEeccc
Q psy7344 199 PQMVAKRGHY-GAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 199 K~r~~~~~~~-~~~l~~-G~~~itih~R~ 225 (240)
|+. +...+ ++.+.+ |+|+|++|+=+
T Consensus 60 k~~--d~~~~~~~~~~~~Gad~i~vh~~~ 86 (206)
T TIGR03128 60 KTM--DAGEYEAEQAFAAGADIVTVLGVA 86 (206)
T ss_pred eec--cchHHHHHHHHHcCCCEEEEeccC
Confidence 444 33333 677778 99999999865
No 261
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=80.76 E-value=7.4 Score=34.55 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=53.4
Q ss_pred HHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHH
Q psy7344 131 EAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYG 209 (240)
Q Consensus 131 ~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~ 209 (240)
+-|+..|+ |+-+||.----|+..-..+ |-+-+.+|+.|++|.+. +++||..+.+... ..-+
T Consensus 19 ~qa~~ae~aga~~v~~~~~~~~~~~~~~--~v~R~~~~~~I~~Ik~~---------------V~iPVIGi~K~~~-~~Ea 80 (283)
T cd04727 19 EQARIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIKEIMDA---------------VSIPVMAKVRIGH-FVEA 80 (283)
T ss_pred HHHHHHHHcCceEEeeeccCchhhhhcC--CeeecCCHHHHHHHHHh---------------CCCCeEEeeehhH-HHHH
Confidence 34566665 7777776555677653333 44457899998888875 6889999998543 5667
Q ss_pred HHHhC-CCCeEEEecc
Q psy7344 210 AYLQD-DWPLLTELGK 224 (240)
Q Consensus 210 ~~l~~-G~~~itih~R 224 (240)
+.|++ |+|.|--+.|
T Consensus 81 ~~L~eaGvDiIDaT~r 96 (283)
T cd04727 81 QILEALGVDMIDESEV 96 (283)
T ss_pred HHHHHcCCCEEeccCC
Confidence 78888 9999964444
No 262
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=80.22 E-value=3.3 Score=36.24 Aligned_cols=134 Identities=13% Similarity=0.040 Sum_probs=72.1
Q ss_pred CCcccCCCchhHHHHHHHhhcccCCCceeeccccc--ccCCCccccc--cCchhhhhhhhccccee-----eeCChhhHH
Q psy7344 34 YGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFI--AEPHCDGIDI--NIGCPQMVAKRGHYGAY-----LQDDWPLLT 104 (240)
Q Consensus 34 ~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~--lap~~~~~dl--~~gC~~~i~~~g~~ga~-----l~~d~eli~ 104 (240)
-||+++.+++| +.++. ..+.|+.++.-.. +..+...++. ..|+.+.+..|.++..| ...|+..+.
T Consensus 114 I~s~~~~n~~L----L~~~a--~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~ 187 (260)
T TIGR01361 114 IGARNMQNFEL----LKEVG--KQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVP 187 (260)
T ss_pred ECcccccCHHH----HHHHh--cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHH
Confidence 45779999998 44555 4678998874332 2233333322 55655544334333333 133455555
Q ss_pred HhhhcccCCCCceeEEe--ecCCHHHHHHHHHH-HccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh
Q psy7344 105 ELGFKTRSHMCGHSLMF--CGNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 105 ~i~~~~~~~~~pvivqi--~g~d~~~~~~aa~~-le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~ 179 (240)
.+.... ..|+++.- .+++.+....+++. +..|++|+.|...+--..+..- +. ..-+|+.++++++.+++
T Consensus 188 ~lk~~~---~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t~d~a~~D--~~-~sl~p~~l~~lv~~i~~ 259 (260)
T TIGR01361 188 VLKKET---HLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPDPEKALSD--SK-QQLTPEEFKRLVKELRA 259 (260)
T ss_pred HHHHhh---CCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCCccccCCc--ch-hcCCHHHHHHHHHHHhh
Confidence 554322 35766621 12223333344433 3458998777777433333211 22 34689999999988764
No 263
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=80.01 E-value=14 Score=31.21 Aligned_cols=81 Identities=15% Similarity=0.095 Sum_probs=49.5
Q ss_pred eEEeec-CCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 118 SLMFCG-NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 118 ivqi~g-~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
.+||+| .++++...++ +.|+|.+=+-+-..++ + --+++.+++|.+.+...+ ..+-|
T Consensus 4 ~vKICGi~~~eda~~~~---~~Gad~iGfI~~~~S~-----R-----~V~~~~a~~i~~~~~~~i----------~~VgV 60 (210)
T PRK01222 4 RVKICGITTPEDAEAAA---ELGADAIGFVFYPKSP-----R-----YVSPEQAAELAAALPPFV----------KVVGV 60 (210)
T ss_pred eEEECCCCcHHHHHHHH---HcCCCEEEEccCCCCC-----C-----cCCHHHHHHHHHhCCCCC----------CEEEE
Confidence 368877 4555443333 3477777665432222 1 257899999998765421 22333
Q ss_pred EEeeehhcHHHHHHHHhC-CCCeEEEecc
Q psy7344 197 GCPQMVAKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 197 svK~r~~~~~~~~~~l~~-G~~~itih~R 224 (240)
+++ .+..++.+.+++ +.|.|.+||-
T Consensus 61 f~~---~~~~~i~~~~~~~~~d~vQLHg~ 86 (210)
T PRK01222 61 FVN---ASDEEIDEIVETVPLDLLQLHGD 86 (210)
T ss_pred EeC---CCHHHHHHHHHhcCCCEEEECCC
Confidence 332 345567777888 9999999984
No 264
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=79.86 E-value=5.4 Score=35.25 Aligned_cols=54 Identities=17% Similarity=-0.064 Sum_probs=36.3
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
..|+++.+.. +..+..+.++..++ |+|++++-. |.- ...+.+.+.+..+.+.++
T Consensus 69 ~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~~p--P~y----------~~~~~~~i~~~f~~v~~~ 123 (289)
T cd00951 69 RVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLP--PYL----------TEAPQEGLYAHVEAVCKS 123 (289)
T ss_pred CCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEECC--CCC----------CCCCHHHHHHHHHHHHhc
Confidence 4799999865 88888888888876 899999822 221 112456655655555554
No 265
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=79.83 E-value=8.7 Score=33.63 Aligned_cols=107 Identities=10% Similarity=-0.105 Sum_probs=58.3
Q ss_pred eeeCChhhHHHhhhcccCCCCceeEEeecC-CHHHHHHHHHHHcc-CCCEEEe-cCCCchhhhhcccccccccCCHHHHH
Q psy7344 95 YLQDDWPLLTELGFKTRSHMCGHSLMFCGN-DSKNLTEAAKLAEP-HCDGIDI-NIGCPQMVAKRGHYGAYLQDDWPLLT 171 (240)
Q Consensus 95 ~l~~d~eli~~i~~~~~~~~~pvivqi~g~-d~~~~~~aa~~le~-~~d~Idi-n~gCP~~~~~~~g~G~~l~~~p~~i~ 171 (240)
+...+++++..+-. ...|++++-+-. +++++..+++.+.. |..-|.| -+|...- .++ ...-.|+..+.
T Consensus 117 ~~~~n~~LL~~~a~----~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y----~~~-~~~~~dl~~i~ 187 (260)
T TIGR01361 117 RNMQNFELLKEVGK----QGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTF----EKA-TRNTLDLSAVP 187 (260)
T ss_pred ccccCHHHHHHHhc----CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCC----CCC-CcCCcCHHHHH
Confidence 33445566655532 357999997645 89999999999965 6544443 3332110 000 01235666655
Q ss_pred HHHHHhhhccccccCCCCCCCCeeeEEeee----h-hcHHHHHHHHhC-CCCe--EEEeccc
Q psy7344 172 NLVYSPNMVHFVIAEPHCDGNDINIGCPQM----V-AKRGHYGAYLQD-DWPL--LTELGKM 225 (240)
Q Consensus 172 ~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r----~-~~~~~~~~~l~~-G~~~--itih~R~ 225 (240)
.+.+. ...||.+--. . +-....+++... |+++ |-.|---
T Consensus 188 ~lk~~---------------~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t~ 234 (260)
T TIGR01361 188 VLKKE---------------THLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPDP 234 (260)
T ss_pred HHHHh---------------hCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 55432 3345555222 1 223456777778 9996 4445433
No 266
>PRK06354 pyruvate kinase; Provisional
Probab=79.78 E-value=13 Score=36.61 Aligned_cols=93 Identities=12% Similarity=0.075 Sum_probs=60.5
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc--cCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l--~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
..++++|| .+++-+..+-+.++. +|+|++++| . .|..+ ..-|...+++++..++.
T Consensus 220 ~~~iiaKI--Et~eav~nldeI~~~-~DgImVaRG---D------Lgve~g~e~v~~~qk~ii~~~~~~----------- 276 (590)
T PRK06354 220 HIPIIAKI--EKQEAIDNIDAILEL-CDGLMVARG---D------LGVEIPAEEVPLLQKRLIKKANRL----------- 276 (590)
T ss_pred CceEEEEE--CCHHHHHhHHHHHHh-cCEEEEccc---h------hhcccCcHHHHHHHHHHHHHHHHc-----------
Confidence 46788888 444444444444433 899999888 2 12222 34466777788777664
Q ss_pred CCeeeEEeee-hh-----------cHHHHHHHHhCCCCeEEEecccccccC
Q psy7344 192 NDINIGCPQM-VA-----------KRGHYGAYLQDDWPLLTELGKMAMLVG 230 (240)
Q Consensus 192 ~~~pvsvK~r-~~-----------~~~~~~~~l~~G~~~itih~R~~~~~~ 230 (240)
..|+.+=+. ++ ..-|.+.++.+|+|++.+-+-|..-+|
T Consensus 277 -gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~DavMLS~ETA~G~y 326 (590)
T PRK06354 277 -GKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDAVMLSNETAAGDY 326 (590)
T ss_pred -CCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEecccccCCCC
Confidence 557766554 22 345788888889999999888876554
No 267
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=79.64 E-value=5.6 Score=35.18 Aligned_cols=34 Identities=18% Similarity=0.050 Sum_probs=28.8
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEecC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINI 147 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~ 147 (240)
..|+++++...+..+..+.++..++ |+|+|.+-.
T Consensus 73 ~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~ 107 (293)
T PRK04147 73 KVKLIAQVGSVNTAEAQELAKYATELGYDAISAVT 107 (293)
T ss_pred CCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4689999988889999999998866 899999853
No 268
>PLN02363 phosphoribosylanthranilate isomerase
Probab=79.34 E-value=15 Score=32.20 Aligned_cols=82 Identities=11% Similarity=0.065 Sum_probs=51.9
Q ss_pred eEEeecC-CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc-cccccCCCCCCCCee
Q psy7344 118 SLMFCGN-DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV-HFVIAEPHCDGNDIN 195 (240)
Q Consensus 118 ivqi~g~-d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~-~~~i~~~~~~~~~~p 195 (240)
.++|+|- ++++...++ +.|+|.|=+.+-.+++ + --.++.+++|++.+... + ..+-
T Consensus 48 ~VKICGit~~eda~~a~---~~GaD~iGfIf~~~Sp-----R-----~Vs~e~a~~I~~~l~~~~~----------~~Vg 104 (256)
T PLN02363 48 LVKMCGITSARDAAMAV---EAGADFIGMILWPKSK-----R-----SISLSVAKEISQVAREGGA----------KPVG 104 (256)
T ss_pred eEEECCCCcHHHHHHHH---HcCCCEEEEecCCCCC-----C-----cCCHHHHHHHHHhccccCc----------cEEE
Confidence 4799874 555544333 4578887765432222 1 14799999999876542 0 2234
Q ss_pred eEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 196 IGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 196 vsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
|+++ .+..++.+.+++ |.|.|.+||-.
T Consensus 105 Vfv~---~~~~~I~~~~~~~~ld~VQLHG~e 132 (256)
T PLN02363 105 VFVD---DDANTILRAADSSDLELVQLHGNG 132 (256)
T ss_pred EEeC---CCHHHHHHHHHhcCCCEEEECCCC
Confidence 4443 345567788889 99999999854
No 269
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=79.26 E-value=6.2 Score=34.48 Aligned_cols=83 Identities=14% Similarity=0.041 Sum_probs=50.9
Q ss_pred CHHHHHH-HHHHHccCCCEEEecCCCchhhhhccccccccc---CCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEee
Q psy7344 125 DSKNLTE-AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ---DDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQ 200 (240)
Q Consensus 125 d~~~~~~-aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~---~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~ 200 (240)
|.+...+ +.+++++|+|.||||.--..+ |+... ..++.+..+++.+++. .++|+|+-.
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDIG~~st~p-------~~~~i~~~~E~~rl~~~v~~i~~~-----------~~~plSIDT 83 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADIIDIGGESTRP-------GADPVSVEEELERVIPVLEALRGE-----------LDVLISVDT 83 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCC-------CCCCCCHHHHHHHHHHHHHHHHhc-----------CCCcEEEeC
Confidence 5555554 445567799999998531111 11111 2344555567777665 577888877
Q ss_pred eh---------------h-----c-HHHHHHHHhC-CCCeEEEeccc
Q psy7344 201 MV---------------A-----K-RGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 201 r~---------------~-----~-~~~~~~~l~~-G~~~itih~R~ 225 (240)
.- . . -.++.+.+.+ |+..|.+|.+.
T Consensus 84 ~~~~v~e~al~~G~~iINdisg~~~~~~~~~l~~~~~~~vV~m~~~g 130 (257)
T cd00739 84 FRAEVARAALEAGADIINDVSGGSDDPAMLEVAAEYGAPLVLMHMRG 130 (257)
T ss_pred CCHHHHHHHHHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEEECCCC
Confidence 61 0 1 1467777788 99999999753
No 270
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=79.25 E-value=5.6 Score=35.05 Aligned_cols=33 Identities=21% Similarity=0.093 Sum_probs=28.5
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEec
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDIN 146 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin 146 (240)
..|+++.+.+.+.++..+.++.+++ |+|+|++-
T Consensus 70 ~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~ 103 (292)
T PRK03170 70 RVPVIAGTGSNSTAEAIELTKFAEKAGADGALVV 103 (292)
T ss_pred CCcEEeecCCchHHHHHHHHHHHHHcCCCEEEEC
Confidence 4689999888899999999999876 89999983
No 271
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=79.02 E-value=11 Score=33.19 Aligned_cols=94 Identities=12% Similarity=-0.014 Sum_probs=56.0
Q ss_pred eeEEeecC--CHHHHHHHHHHHcc-CCCEEEecCCCchhhh-----hcccccccc--cCCHHHHHHHHHHhhhccccccC
Q psy7344 117 HSLMFCGN--DSKNLTEAAKLAEP-HCDGIDINIGCPQMVA-----KRGHYGAYL--QDDWPLLTNLVYSPNMVHFVIAE 186 (240)
Q Consensus 117 vivqi~g~--d~~~~~~aa~~le~-~~d~Idin~gCP~~~~-----~~~g~G~~l--~~~p~~i~~iv~~~~~~~~~i~~ 186 (240)
++.=+..+ |.+++.++++.+.+ |+|.|||+.==..+.+ .+... .+| .-+.+.+-++++.+++.
T Consensus 17 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~-rAL~~g~~~~~~~~~~~~~r~~------ 89 (263)
T CHL00200 17 LIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASN-RALKQGINLNKILSILSEVNGE------ 89 (263)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHH-HHHHcCCCHHHHHHHHHHHhcC------
Confidence 44444434 67788898887755 8999999753211222 11111 111 23455556666666654
Q ss_pred CCCCCCCeeeEEeee-hh-----cHHHHHHHHhC-CCCeEEEec
Q psy7344 187 PHCDGNDINIGCPQM-VA-----KRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 187 ~~~~~~~~pvsvK~r-~~-----~~~~~~~~l~~-G~~~itih~ 223 (240)
.++|+. =+. ++ -...|.+.+.+ |+|++.+|.
T Consensus 90 -----~~~p~v-lm~Y~N~i~~~G~e~F~~~~~~aGvdgviipD 127 (263)
T CHL00200 90 -----IKAPIV-IFTYYNPVLHYGINKFIKKISQAGVKGLIIPD 127 (263)
T ss_pred -----CCCCEE-EEecccHHHHhCHHHHHHHHHHcCCeEEEecC
Confidence 566764 222 22 24678899999 999999985
No 272
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=77.85 E-value=4.9 Score=35.30 Aligned_cols=131 Identities=15% Similarity=0.076 Sum_probs=70.7
Q ss_pred CCcccCCCchhHHHHHHHhhcccCCCceeecccccccCC--Ccccc--ccCchhhh-hhhhcccceee----eCChhhHH
Q psy7344 34 YGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPH--CDGID--INIGCPQM-VAKRGHYGAYL----QDDWPLLT 104 (240)
Q Consensus 34 ~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~--~~~~d--l~~gC~~~-i~~~g~~ga~l----~~d~eli~ 104 (240)
.|+++|++.+| +.++. ..+.||.+|--.+.+|. ....+ ...|.++. ++.+|- .|. +.|-.-+.
T Consensus 106 IgArn~rn~~L----L~a~g--~t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~--tf~y~r~~~D~~~vp 177 (264)
T PRK05198 106 IPAFLCRQTDL----LVAAA--KTGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGT--SFGYNNLVVDMRGLP 177 (264)
T ss_pred ECchhcchHHH----HHHHh--ccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCC--CcCCCCeeechhhhH
Confidence 46999999988 55565 46789999865455432 22221 23443332 344432 221 12222222
Q ss_pred HhhhcccCCCCceeE------Eee-------cCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHH
Q psy7344 105 ELGFKTRSHMCGHSL------MFC-------GNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLL 170 (240)
Q Consensus 105 ~i~~~~~~~~~pviv------qi~-------g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i 170 (240)
.+... ..||++ |.- +++.+....+++.. ..|+||+.+-.. |.+... ..-|.+ +-+++.+
T Consensus 178 ~~k~~----~lPVi~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~iEvH-pdP~~A-lsDg~q-~l~~~~~ 250 (264)
T PRK05198 178 IMRET----GAPVIFDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLFIETH-PDPDNA-LSDGPN-MLPLDKL 250 (264)
T ss_pred HHhhC----CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEeC-CCcccc-CCCccc-cCCHHHH
Confidence 22221 245544 331 34555555566654 458999999888 554321 122333 3578888
Q ss_pred HHHHHHhhh
Q psy7344 171 TNLVYSPNM 179 (240)
Q Consensus 171 ~~iv~~~~~ 179 (240)
.++++.++.
T Consensus 251 ~~ll~~l~~ 259 (264)
T PRK05198 251 EPLLEQLKA 259 (264)
T ss_pred HHHHHHHHH
Confidence 888887765
No 273
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=77.66 E-value=11 Score=32.53 Aligned_cols=75 Identities=16% Similarity=0.217 Sum_probs=49.3
Q ss_pred cCCHHH--HHHHHHHHccCCCEEE--ecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEE
Q psy7344 123 GNDSKN--LTEAAKLAEPHCDGID--INIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGC 198 (240)
Q Consensus 123 g~d~~~--~~~aa~~le~~~d~Id--in~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsv 198 (240)
|.++.. ..++...+++|+|.|| ||.|. -.-.||+.+.+-++.++++. .-++.+
T Consensus 72 G~~~t~~K~~Ea~~ai~~GAdEiDmVinig~------------~k~g~~~~V~~eI~~v~~a~-----------~~~~~l 128 (228)
T COG0274 72 GANTTAVKAAEAREAIENGADEIDMVINIGA------------LKSGNWEAVEREIRAVVEAC-----------ADAVVL 128 (228)
T ss_pred CCChHHHHHHHHHHHHHcCCCeeeeeeeHHH------------HhcCCHHHHHHHHHHHHHHh-----------CCCceE
Confidence 344443 5556666788999999 55552 23469999999999888872 222555
Q ss_pred eeeh-------hcHHHHHHHHhC-CCCeEE
Q psy7344 199 PQMV-------AKRGHYGAYLQD-DWPLLT 220 (240)
Q Consensus 199 K~r~-------~~~~~~~~~l~~-G~~~it 220 (240)
|.-+ +.....++...+ |+|+|-
T Consensus 129 KVIlEt~~Lt~ee~~~A~~i~~~aGAdFVK 158 (228)
T COG0274 129 KVILETGLLTDEEKRKACEIAIEAGADFVK 158 (228)
T ss_pred EEEEeccccCHHHHHHHHHHHHHhCCCEEE
Confidence 5552 223556677778 999983
No 274
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=77.54 E-value=26 Score=32.85 Aligned_cols=70 Identities=13% Similarity=0.083 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhc
Q psy7344 125 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAK 204 (240)
Q Consensus 125 d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~ 204 (240)
+++.+.++..+++.|+|.|-|-.. + .+.+.+.++++.+++.. .+.++.++- -.
T Consensus 151 ~~~~~~~v~~lv~aGvDvI~iD~a-------~--------g~~~~~~~~v~~ik~~~----------p~~~vi~g~--V~ 203 (404)
T PRK06843 151 DIDTIERVEELVKAHVDILVIDSA-------H--------GHSTRIIELVKKIKTKY----------PNLDLIAGN--IV 203 (404)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECC-------C--------CCChhHHHHHHHHHhhC----------CCCcEEEEe--cC
Confidence 455556666666778888776444 1 23445667777777652 234554432 24
Q ss_pred HHHHHHHHhC-CCCeEEE
Q psy7344 205 RGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 205 ~~~~~~~l~~-G~~~iti 221 (240)
+.+-++.+.+ |+|+|.+
T Consensus 204 T~e~a~~l~~aGaD~I~v 221 (404)
T PRK06843 204 TKEAALDLISVGADCLKV 221 (404)
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 5567788888 9999976
No 275
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=77.46 E-value=7.1 Score=34.42 Aligned_cols=33 Identities=24% Similarity=0.050 Sum_probs=28.0
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEec
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDIN 146 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin 146 (240)
..|+++.+...+..+..+.++..++ |+|+|++-
T Consensus 70 ~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~ 103 (288)
T cd00954 70 KVTLIAHVGSLNLKESQELAKHAEELGYDAISAI 103 (288)
T ss_pred CCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 4689999888889999999998876 89999973
No 276
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=77.45 E-value=5.2 Score=35.05 Aligned_cols=133 Identities=16% Similarity=0.088 Sum_probs=71.4
Q ss_pred CCcccCCCchhHHHHHHHhhcccCCCceeecccccccC--CCcccc--ccCchhhh-hhhhcccceee--eCChhhHHHh
Q psy7344 34 YGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEP--HCDGID--INIGCPQM-VAKRGHYGAYL--QDDWPLLTEL 106 (240)
Q Consensus 34 ~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap--~~~~~d--l~~gC~~~-i~~~g~~ga~l--~~d~eli~~i 106 (240)
.|+++|++.+| +.++. ..+.|+.+|--.+.+| |....+ .+.|.+.. ++.+|-+-.|. +.|..-+..+
T Consensus 98 IgArn~rn~~L----L~a~g--~t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~tf~y~r~~~D~~~ip~~ 171 (258)
T TIGR01362 98 IPAFLCRQTDL----LVAAA--KTGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTSFGYNNLVVDMRSLPIM 171 (258)
T ss_pred eCchhcchHHH----HHHHh--ccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHH
Confidence 46999999988 55565 4678999986545543 222222 24454333 45554211111 2222222222
Q ss_pred hhcccCCCCceeE------Eee-------cCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHH
Q psy7344 107 GFKTRSHMCGHSL------MFC-------GNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTN 172 (240)
Q Consensus 107 ~~~~~~~~~pviv------qi~-------g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~ 172 (240)
+.. ..||++ |.- +++-+-...+++.. ..|+||+++-.. |.+... -.-|.+ +-+++.+.+
T Consensus 172 k~~----~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEvH-pdP~~A-lsDg~q-~l~~~~~~~ 244 (258)
T TIGR01362 172 REL----GCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMETH-PDPKNA-KSDGPN-MLPLSELEG 244 (258)
T ss_pred Hhc----CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEeC-CCcccc-CCCccc-cCCHHHHHH
Confidence 221 245544 331 23444455566654 458999999888 454321 122333 357888888
Q ss_pred HHHHhhh
Q psy7344 173 LVYSPNM 179 (240)
Q Consensus 173 iv~~~~~ 179 (240)
+++.++.
T Consensus 245 ll~~l~~ 251 (258)
T TIGR01362 245 LLEKLLA 251 (258)
T ss_pred HHHHHHH
Confidence 8887765
No 277
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=77.17 E-value=22 Score=29.79 Aligned_cols=97 Identities=11% Similarity=-0.025 Sum_probs=53.9
Q ss_pred hHHHhhhcccC-CCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 102 LLTELGFKTRS-HMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 102 li~~i~~~~~~-~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
.+.++....+. ...|+++.. .+.++ +.+..+.|+|.|.+|.+..... .+ .....+++.++++.+.
T Consensus 106 ~~~~~i~~~~~~~~i~vi~~v--~t~ee---~~~a~~~G~d~i~~~~~g~t~~-~~----~~~~~~~~~i~~i~~~---- 171 (221)
T PRK01130 106 TLAELVKRIKEYPGQLLMADC--STLEE---GLAAQKLGFDFIGTTLSGYTEE-TK----KPEEPDFALLKELLKA---- 171 (221)
T ss_pred CHHHHHHHHHhCCCCeEEEeC--CCHHH---HHHHHHcCCCEEEcCCceeecC-CC----CCCCcCHHHHHHHHHh----
Confidence 33444443333 345555432 44443 3344456899998754421110 00 1123456666666554
Q ss_pred cccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEecc
Q psy7344 181 HFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224 (240)
Q Consensus 181 ~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R 224 (240)
.++||.+=..+.+..++.+.++.|+|++.+ |+
T Consensus 172 -----------~~iPvia~GGI~t~~~~~~~l~~GadgV~i-Gs 203 (221)
T PRK01130 172 -----------VGCPVIAEGRINTPEQAKKALELGAHAVVV-GG 203 (221)
T ss_pred -----------CCCCEEEECCCCCHHHHHHHHHCCCCEEEE-ch
Confidence 456887777777777777766669999988 54
No 278
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=76.87 E-value=8 Score=34.26 Aligned_cols=32 Identities=16% Similarity=0.034 Sum_probs=28.2
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEe
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDI 145 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idi 145 (240)
..|+++.+.+.+.++..+.++..++ |+|+|++
T Consensus 70 ~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v 102 (290)
T TIGR00683 70 QIALIAQVGSVNLKEAVELGKYATELGYDCLSA 102 (290)
T ss_pred CCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 4699999988899999999999876 8999998
No 279
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=76.54 E-value=7.1 Score=34.84 Aligned_cols=32 Identities=28% Similarity=0.171 Sum_probs=28.7
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEe
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDI 145 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idi 145 (240)
..|+|+.+++++.++..+.++..++ |+|+|++
T Consensus 73 rvpviaG~g~~~t~eai~lak~a~~~Gad~il~ 105 (299)
T COG0329 73 RVPVIAGVGSNSTAEAIELAKHAEKLGADGILV 105 (299)
T ss_pred CCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEE
Confidence 3689999999999999999999987 8999997
No 280
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=76.43 E-value=32 Score=29.83 Aligned_cols=36 Identities=14% Similarity=0.055 Sum_probs=24.7
Q ss_pred cHHHHHHHHhC-CCCeEEEeccccccc-CCCCCCCCCC
Q psy7344 204 KRGHYGAYLQD-DWPLLTELGKMAMLV-GILDNTGSWT 239 (240)
Q Consensus 204 ~~~~~~~~l~~-G~~~itih~R~~~~~-~~~~~~adw~ 239 (240)
..++.++...+ ||+.|.+-+|-..+. +.|+...+|.
T Consensus 135 ~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~~~g~~r 172 (237)
T TIGR03849 135 DRIKLINKDLEAGADYVIIEGRESGKNIGLFDEKGNVK 172 (237)
T ss_pred HHHHHHHHHHHCCCcEEEEeehhcCCCcceeCCCCCCc
Confidence 34555555567 999999999987663 5566555553
No 281
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=75.92 E-value=16 Score=33.23 Aligned_cols=77 Identities=12% Similarity=0.050 Sum_probs=48.4
Q ss_pred CCceeEEeecC----CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCC
Q psy7344 114 MCGHSLMFCGN----DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPH 188 (240)
Q Consensus 114 ~~pvivqi~g~----d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~ 188 (240)
+-|+++|=+.+ |.+.+.+-.+.|++ |||.|-+ .||.. .+-+.+.+|.+ .
T Consensus 19 daPI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRv--tv~~~------------e~A~A~~~Ik~----~-------- 72 (361)
T COG0821 19 DAPIVVQSMTNTDTADVEATVAQIKALERAGCDIVRV--TVPDM------------EAAEALKEIKQ----R-------- 72 (361)
T ss_pred CCceEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEE--ecCCH------------HHHHHHHHHHH----h--------
Confidence 46899997654 77877777777766 8888876 45543 23334444444 3
Q ss_pred CCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEE
Q psy7344 189 CDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 189 ~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~iti 221 (240)
+++|+.+-+-++ -.++-..-+ |+|.+-|
T Consensus 73 ---~~vPLVaDiHf~--~rla~~~~~~g~~k~RI 101 (361)
T COG0821 73 ---LNVPLVADIHFD--YRLALEAAECGVDKVRI 101 (361)
T ss_pred ---CCCCEEEEeecc--HHHHHHhhhcCcceEEE
Confidence 567877766654 344444445 6666655
No 282
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=75.76 E-value=26 Score=32.32 Aligned_cols=92 Identities=8% Similarity=-0.201 Sum_probs=57.9
Q ss_pred CCceeEEeec----CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhccccccc-ccCCHHHHHHHHHHhhhccccccCC
Q psy7344 114 MCGHSLMFCG----NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAY-LQDDWPLLTNLVYSPNMVHFVIAEP 187 (240)
Q Consensus 114 ~~pvivqi~g----~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~-l~~~p~~i~~iv~~~~~~~~~i~~~ 187 (240)
++|++..+.. -|++.+.+.+..+.. |+|+|=..-+ .|.+ .+..-|.++.+.++++.+-
T Consensus 129 ~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~----------~ge~~~~~~eER~~~v~~av~~a~------ 192 (367)
T cd08205 129 DRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDEL----------LADQPYAPFEERVRACMEAVRRAN------ 192 (367)
T ss_pred CCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeecccc----------ccCcccCCHHHHHHHHHHHHHHHH------
Confidence 5787776643 478888888777754 7888743222 1111 3455556655555555540
Q ss_pred CCCCCCeeeEEeee--hhcHHHHHHHHhC-CCCeEEE
Q psy7344 188 HCDGNDINIGCPQM--VAKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 188 ~~~~~~~pvsvK~r--~~~~~~~~~~l~~-G~~~iti 221 (240)
.-+|...++.+.+. .++.++.++.+++ |++++.+
T Consensus 193 ~~TG~~~~y~~nit~~~~e~i~~a~~a~~~Gad~vmv 229 (367)
T cd08205 193 EETGRKTLYAPNITGDPDELRRRADRAVEAGANALLI 229 (367)
T ss_pred HhhCCcceEEEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 00123467777776 5677889999999 9999877
No 283
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=75.72 E-value=8.2 Score=33.96 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=28.1
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEec
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDIN 146 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin 146 (240)
..|+++.+...+.++..+.++..++ |+|+|++-
T Consensus 67 ~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~ 100 (285)
T TIGR00674 67 RVPVIAGTGSNATEEAISLTKFAEDVGADGFLVV 100 (285)
T ss_pred CCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEc
Confidence 4689999888888999999998876 89999983
No 284
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=75.53 E-value=15 Score=32.02 Aligned_cols=82 Identities=13% Similarity=0.060 Sum_probs=50.7
Q ss_pred CHHHHHHHHHH-HccCCCEEEecCCCchhhhhcccccccccC---CHHHHHHHHHHhhhccccccCCCCCCCCeeeEEee
Q psy7344 125 DSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQD---DWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQ 200 (240)
Q Consensus 125 d~~~~~~aa~~-le~~~d~Idin~gCP~~~~~~~g~G~~l~~---~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~ 200 (240)
++++..+.++. +++|++.||||.- ... . |+.... .++.+..+++.+++. .++|+++-.
T Consensus 21 ~~~~~~~~a~~~~~~GA~iIDIG~~-st~----p--~~~~i~~~~E~~rl~~~v~~~~~~-----------~~~plsiDT 82 (257)
T TIGR01496 21 SVDKAVAHAERMLEEGADIIDVGGE-STR----P--GADRVSPEEELNRVVPVIKALRDQ-----------PDVPISVDT 82 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCC-CCC----C--CCCCCCHHHHHHHHHHHHHHHHhc-----------CCCeEEEeC
Confidence 66776666555 4679999999632 110 1 111111 233566667776664 477888877
Q ss_pred e----h-----------h-----cHHHHHHHHhC-CCCeEEEecc
Q psy7344 201 M----V-----------A-----KRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 201 r----~-----------~-----~~~~~~~~l~~-G~~~itih~R 224 (240)
. + . ...++.+.+.+ |+..|.+|-+
T Consensus 83 ~~~~vi~~al~~G~~iINsis~~~~~~~~~l~~~~~~~vV~m~~~ 127 (257)
T TIGR01496 83 YRAEVARAALEAGADIINDVSGGQDPAMLEVAAEYGVPLVLMHMR 127 (257)
T ss_pred CCHHHHHHHHHcCCCEEEECCCCCCchhHHHHHHcCCcEEEEeCC
Confidence 6 0 1 12347777888 9999999965
No 285
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=75.50 E-value=9.9 Score=33.85 Aligned_cols=31 Identities=26% Similarity=0.142 Sum_probs=26.0
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEe
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDI 145 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idi 145 (240)
..|+++.+.. +..+..+.++..++ |+|+|++
T Consensus 76 ~~pvi~gv~~-~t~~~i~~~~~a~~~Gadav~~ 107 (303)
T PRK03620 76 RVPVIAGAGG-GTAQAIEYAQAAERAGADGILL 107 (303)
T ss_pred CCcEEEecCC-CHHHHHHHHHHHHHhCCCEEEE
Confidence 4799998864 78888888888876 8999998
No 286
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=75.43 E-value=16 Score=31.60 Aligned_cols=91 Identities=13% Similarity=0.086 Sum_probs=58.8
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhcccccc--CCCC--
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIA--EPHC-- 189 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~--~~~~-- 189 (240)
..|+.+ |+.+.+..++.++|..|+|=|-||.. .+.||++|.++-+..-...-|++ .--.
T Consensus 74 fiPltV---GGGI~s~eD~~~ll~aGADKVSINsa--------------Av~~p~lI~~~a~~FGsQciVvaIDakr~~~ 136 (256)
T COG0107 74 FIPLTV---GGGIRSVEDARKLLRAGADKVSINSA--------------AVKDPELITEAADRFGSQCIVVAIDAKRVPD 136 (256)
T ss_pred eeeeEe---cCCcCCHHHHHHHHHcCCCeeeeChh--------------HhcChHHHHHHHHHhCCceEEEEEEeeeccC
Confidence 356654 47777888888999999999999877 35899999998876544321210 0000
Q ss_pred -CCCCeeeEEeeeh----hcHHHHHHHHhC-CCCeEEE
Q psy7344 190 -DGNDINIGCPQMV----AKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 190 -~~~~~pvsvK~r~----~~~~~~~~~l~~-G~~~iti 221 (240)
+.....|..+.-. -++.++++.+++ ||-.|-+
T Consensus 137 g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlL 174 (256)
T COG0107 137 GENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILL 174 (256)
T ss_pred CCCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEE
Confidence 0011233333321 267899999999 9988765
No 287
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=75.37 E-value=8.1 Score=33.47 Aligned_cols=43 Identities=5% Similarity=-0.090 Sum_probs=33.4
Q ss_pred cCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEE
Q psy7344 164 QDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 164 ~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~iti 221 (240)
+.+|..++-|++. .++||.|---+-..-+.+...|.|+|++-+
T Consensus 168 ~~n~~~l~iiie~---------------a~VPviVDAGiG~pSdAa~aMElG~DaVL~ 210 (262)
T COG2022 168 LQNPYNLEIIIEE---------------ADVPVIVDAGIGTPSDAAQAMELGADAVLL 210 (262)
T ss_pred cCCHHHHHHHHHh---------------CCCCEEEeCCCCChhHHHHHHhcccceeeh
Confidence 5899999888875 466888877777777777777778888765
No 288
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=75.32 E-value=16 Score=31.97 Aligned_cols=72 Identities=14% Similarity=0.010 Sum_probs=46.6
Q ss_pred eeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHH
Q psy7344 96 LQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175 (240)
Q Consensus 96 l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~ 175 (240)
...+|+.++.++.... +.|+++. .|-+++...++.+. +||++++.+ .+ +.|. -.=..|++.++++++
T Consensus 184 ~~~d~~~l~~vr~~~~--~~Pvllg-gGvt~eNv~e~l~~----adGviVgS~--~K---~~G~-~~n~~D~~rV~~Fm~ 250 (257)
T TIGR00259 184 TEVDLELLKLAKETVK--DTPVLAG-SGVNLENVEELLSI----ADGVIVATT--IK---KDGV-FNNFVDQARVSQFVE 250 (257)
T ss_pred CCCCHHHHHHHHhccC--CCeEEEE-CCCCHHHHHHHHhh----CCEEEECCC--cc---cCCc-cCCCcCHHHHHHHHH
Confidence 3467898888764331 3576543 34477777766663 899999877 22 2221 111479999999999
Q ss_pred Hhhhc
Q psy7344 176 SPNMV 180 (240)
Q Consensus 176 ~~~~~ 180 (240)
.++..
T Consensus 251 ~v~~~ 255 (257)
T TIGR00259 251 KVAHG 255 (257)
T ss_pred HHHHh
Confidence 88764
No 289
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=75.22 E-value=12 Score=33.07 Aligned_cols=97 Identities=7% Similarity=-0.216 Sum_probs=56.1
Q ss_pred cCCCCceeEEee-cCCHHHHHHHHHHHcc-CCC-EEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCC
Q psy7344 111 RSHMCGHSLMFC-GNDSKNLTEAAKLAEP-HCD-GIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEP 187 (240)
Q Consensus 111 ~~~~~pvivqi~-g~d~~~~~~aa~~le~-~~d-~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~ 187 (240)
....+|+..+=+ ++.+++|..+|+.+.. |.. .|-+-+|-. ....+.. ..-|-..+ -.+++.
T Consensus 149 G~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIR----tfe~~TR-ntLDi~aV----~~~kq~------- 212 (286)
T COG2876 149 GRQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIR----TFEKATR-NTLDISAV----PILKQE------- 212 (286)
T ss_pred cccCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccc----ccccccc-ceechHHH----HHHHhh-------
Confidence 344689988852 5689999999999865 433 333334411 1111111 11233333 333444
Q ss_pred CCCCCCeeeEEeee-----hhcHHHHHHHHhC-CCCeEE--Eeccccc
Q psy7344 188 HCDGNDINIGCPQM-----VAKRGHYGAYLQD-DWPLLT--ELGKMAM 227 (240)
Q Consensus 188 ~~~~~~~pvsvK~r-----~~~~~~~~~~l~~-G~~~it--ih~R~~~ 227 (240)
+.+||.+... .+-..-++++... |+|+|. +|.--..
T Consensus 213 ----THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiEVHp~P~~ 256 (286)
T COG2876 213 ----THLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIEVHPDPEK 256 (286)
T ss_pred ----cCCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEEecCCccc
Confidence 7889998877 2334567888888 999965 4554433
No 290
>PRK05826 pyruvate kinase; Provisional
Probab=75.08 E-value=24 Score=33.68 Aligned_cols=95 Identities=11% Similarity=0.025 Sum_probs=59.3
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
...+++|| .+++-...+-+.++. +|+|++++| ..... +| ...-|...++|++..++. .
T Consensus 215 ~~~iiakI--Et~eav~nldeI~~~-~DgImIgrg---DLg~e--lg--~~~v~~~qk~Ii~~c~~~------------g 272 (465)
T PRK05826 215 HAKIIAKI--ERAEAVDNIDEIIEA-SDGIMVARG---DLGVE--IP--DEEVPGLQKKIIRKAREA------------G 272 (465)
T ss_pred CceEEEEE--cCHHHHHhHHHHHHH-cCEEEECcc---hhhhh--cC--cHhHHHHHHHHHHHHHHc------------C
Confidence 35678888 444433333333333 899999888 21111 11 234566777788777664 4
Q ss_pred eeeEEeee-h-----------hcHHHHHHHHhCCCCeEEEecccccccC
Q psy7344 194 INIGCPQM-V-----------AKRGHYGAYLQDDWPLLTELGKMAMLVG 230 (240)
Q Consensus 194 ~pvsvK~r-~-----------~~~~~~~~~l~~G~~~itih~R~~~~~~ 230 (240)
.|+.+=+. + ...-|.+.++.+|+|++.+-|-|..-+|
T Consensus 273 Kpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~y 321 (465)
T PRK05826 273 KPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKY 321 (465)
T ss_pred CCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcC
Confidence 57766544 2 1345777788889999999888877654
No 291
>PRK13753 dihydropteroate synthase; Provisional
Probab=75.01 E-value=13 Score=33.02 Aligned_cols=82 Identities=11% Similarity=0.024 Sum_probs=49.8
Q ss_pred CHHHHHH-HHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHH---HHHHHhhhccccccCCCCCCCCeeeEEee
Q psy7344 125 DSKNLTE-AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLT---NLVYSPNMVHFVIAEPHCDGNDINIGCPQ 200 (240)
Q Consensus 125 d~~~~~~-aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~---~iv~~~~~~~~~i~~~~~~~~~~pvsvK~ 200 (240)
+++...+ +.+++++|+|.|||+.-- . +-|+....--+.+. .+++++++. .+|+|+-+
T Consensus 23 ~~d~a~~~a~~m~~~GAdIIDIGgeS-T------rPga~~vs~eeE~~Rv~pvI~~l~~~------------~~~ISIDT 83 (279)
T PRK13753 23 DPAGAVTAAIEMLRVGSDVVDVGPAA-S------HPDARPVSPADEIRRIAPLLDALSDQ------------MHRVSIDS 83 (279)
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCC-C------CCCCCcCCHHHHHHHHHHHHHHHHhC------------CCcEEEEC
Confidence 5565555 455567899999997652 1 11232233334444 555555432 45788877
Q ss_pred eh---------------h-----cHHHHHHHHhC-CCCeEEEeccc
Q psy7344 201 MV---------------A-----KRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 201 r~---------------~-----~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.- . ...++++.+.+ |+..+.+|.|.
T Consensus 84 ~~~~va~~al~aGadiINDVsg~~d~~~~~vva~~~~~vVlmH~~~ 129 (279)
T PRK13753 84 FQPETQRYALKRGVGYLNDIQGFPDPALYPDIAEADCRLVVMHSAQ 129 (279)
T ss_pred CCHHHHHHHHHcCCCEEEeCCCCCchHHHHHHHHcCCCEEEEecCC
Confidence 71 0 13456677778 99999999874
No 292
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=74.84 E-value=9.3 Score=33.44 Aligned_cols=33 Identities=18% Similarity=0.007 Sum_probs=28.0
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEec
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDIN 146 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin 146 (240)
..|+++.+.+.+.++..+.++.+++ |+|+|++-
T Consensus 69 ~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~ 102 (284)
T cd00950 69 RVPVIAGTGSNNTAEAIELTKRAEKAGADAALVV 102 (284)
T ss_pred CCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEc
Confidence 4688988888889999999998876 89999984
No 293
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=74.61 E-value=18 Score=34.72 Aligned_cols=95 Identities=11% Similarity=0.033 Sum_probs=59.0
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
+.++++|| .+++-+..+-+.++. +|+|++++| ..... .| ...-|...++|++..++. .
T Consensus 215 ~~~iiakI--Et~~av~nldeI~~~-~DgImIarg---DLg~e--~g--~~~v~~~qk~ii~~~~~~------------g 272 (480)
T cd00288 215 DIKIIAKI--ENQEGVNNFDEILEA-SDGIMVARG---DLGVE--IP--AEEVFLAQKMLIAKCNLA------------G 272 (480)
T ss_pred CceEEEEE--CCHHHHHhHHHHHHh-cCEEEECcc---hhhhh--cC--hHHHHHHHHHHHHHHHHc------------C
Confidence 45788888 444444444444433 899999888 21111 11 123355667777776664 4
Q ss_pred eeeEEeee-hh-----------cHHHHHHHHhCCCCeEEEecccccccC
Q psy7344 194 INIGCPQM-VA-----------KRGHYGAYLQDDWPLLTELGKMAMLVG 230 (240)
Q Consensus 194 ~pvsvK~r-~~-----------~~~~~~~~l~~G~~~itih~R~~~~~~ 230 (240)
+|+.+=+. ++ ..-|.+.++.+|+|++.+-+-|..-+|
T Consensus 273 kpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmLS~ETa~G~y 321 (480)
T cd00288 273 KPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVMLSGETAKGKY 321 (480)
T ss_pred CCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEEechhcCCCC
Confidence 57766554 22 345777888889999999888876554
No 294
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=74.45 E-value=12 Score=31.59 Aligned_cols=73 Identities=7% Similarity=-0.081 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeE--Eeee-
Q psy7344 125 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIG--CPQM- 201 (240)
Q Consensus 125 d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvs--vK~r- 201 (240)
+.++..+.++.+.+.++.|.+|... - . ..-+ ++++.+++. ..+|. .|+-
T Consensus 9 ~~~~a~~i~~~~~~~v~~iKvg~~l--~--~--------~~g~----~~i~~l~~~------------~~~i~~DlK~~D 60 (216)
T cd04725 9 DEEFALALIDALGPYVCAVKVGLEL--F--E--------AAGP----EIVKELREL------------GFLVFLDLKLGD 60 (216)
T ss_pred CHHHHHHHHHhcCCcccEEEECHHH--H--H--------hcCH----HHHHHHHHC------------CCcEEEEeecCc
Confidence 3445555555555567777776552 1 0 0122 445555543 23555 4433
Q ss_pred hhcHH-HHHHHHhC-CCCeEEEeccc
Q psy7344 202 VAKRG-HYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 202 ~~~~~-~~~~~l~~-G~~~itih~R~ 225 (240)
+.+|. ..++.+.+ |+|++|+|+-.
T Consensus 61 Ig~tv~~~~~~~~~~gad~~Tvh~~~ 86 (216)
T cd04725 61 IPNTVAAAAEALLGLGADAVTVHPYG 86 (216)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECCcC
Confidence 44454 45666778 99999999965
No 295
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=74.29 E-value=18 Score=31.95 Aligned_cols=132 Identities=20% Similarity=0.189 Sum_probs=69.3
Q ss_pred CCcccCCCchhHHHHHHHhhcccCCCceeecccc--cccCC---CccccccCchhhh-hhhhcccceee-----eCChhh
Q psy7344 34 YGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLF--IAEPH---CDGIDINIGCPQM-VAKRGHYGAYL-----QDDWPL 102 (240)
Q Consensus 34 ~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~--~lap~---~~~~dl~~gC~~~-i~~~g~~ga~l-----~~d~el 102 (240)
-|+..|++-+|..+ +- ..+.|+.+|--. .+..| +.++ +.-||+.. ++.+| .+.|- +-|...
T Consensus 134 vGARNMQNF~LLke----~G--~~~kPvLLKRg~~aTieEwL~AAEYI-~s~GN~~vILCERG-IRtfe~~TRntLDi~a 205 (286)
T COG2876 134 VGARNMQNFALLKE----VG--RQNKPVLLKRGLSATIEEWLNAAEYI-LSHGNGNVILCERG-IRTFEKATRNTLDISA 205 (286)
T ss_pred hcccchhhhHHHHH----hc--ccCCCeEEecCccccHHHHHHHHHHH-HhCCCCcEEEEecc-cccccccccceechHH
Confidence 45778888888554 33 457899886210 01111 1222 34454443 23333 12221 123333
Q ss_pred HHHhhhcccCCCCceeEEeecC-CHHHHH-HHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh
Q psy7344 103 LTELGFKTRSHMCGHSLMFCGN-DSKNLT-EAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 103 i~~i~~~~~~~~~pvivqi~g~-d~~~~~-~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~ 179 (240)
+..++..+ .-|+++..... .-.++. -+++.. .-|+||||+-.. |++...-.-... .-+|+.+.++++.++.
T Consensus 206 V~~~kq~T---HLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiEVH-p~P~~AlsD~~Q--ql~~~~f~~l~~~~~~ 279 (286)
T COG2876 206 VPILKQET---HLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIEVH-PDPEKALSDAKQ--QLTPEEFEELVKELRA 279 (286)
T ss_pred HHHHHhhc---CCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEEec-CCcccccCcccc--cCCHHHHHHHHHHHHH
Confidence 33333322 36888877542 222333 344444 448999999888 775322111122 3479999999988765
No 296
>PLN02535 glycolate oxidase
Probab=74.07 E-value=28 Score=32.17 Aligned_cols=95 Identities=11% Similarity=0.062 Sum_probs=58.2
Q ss_pred CceeEEeec-CCHHHHHHHHHHHcc-CCCEEEecCCCchhhh----hcccc--------------------ccc------
Q psy7344 115 CGHSLMFCG-NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVA----KRGHY--------------------GAY------ 162 (240)
Q Consensus 115 ~pvivqi~g-~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~----~~~g~--------------------G~~------ 162 (240)
.|...|+.- .|.+...+..++.+. |+.+|-+..=.|..-. .+.++ ++.
T Consensus 124 ~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (364)
T PLN02535 124 AVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFAS 203 (364)
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHHH
Confidence 478899964 678888888888876 7888777555544110 00000 000
Q ss_pred --c--cCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 163 --L--QDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 163 --l--~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
+ .-+|+.++.+. +. .+.||.+|.-.. .+-++.+.+ |+|+|.+-+.-.
T Consensus 204 ~~~~~~~tW~~i~~lr----~~-----------~~~PvivKgV~~--~~dA~~a~~~GvD~I~vsn~GG 255 (364)
T PLN02535 204 ETFDASLSWKDIEWLR----SI-----------TNLPILIKGVLT--REDAIKAVEVGVAGIIVSNHGA 255 (364)
T ss_pred hccCCCCCHHHHHHHH----hc-----------cCCCEEEecCCC--HHHHHHHHhcCCCEEEEeCCCc
Confidence 0 12455544444 33 678999996632 244778888 999999965443
No 297
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=73.93 E-value=23 Score=32.56 Aligned_cols=96 Identities=10% Similarity=-0.110 Sum_probs=57.3
Q ss_pred CCceeEEeecC-CHHHHHHHHHHHcc-CC-CEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 114 MCGHSLMFCGN-DSKNLTEAAKLAEP-HC-DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 114 ~~pvivqi~g~-d~~~~~~aa~~le~-~~-d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
..|++++-+-+ +++++..+++.+.. |- +.+-+.||...- ..+|. ....|+..+..+.+ .
T Consensus 208 ~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf---~s~y~-~~~~dl~ai~~lk~----~---------- 269 (352)
T PRK13396 208 DKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTF---DRQYT-RNTLDLSVIPVLRS----L---------- 269 (352)
T ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccC---cCCCC-CCCcCHHHHHHHHH----h----------
Confidence 57999987555 99999999999865 54 455556663111 01222 13456666655533 2
Q ss_pred CCCeeeEEeee-----hhcHHHHHHHHhC-CCC--eEEEecccccc
Q psy7344 191 GNDINIGCPQM-----VAKRGHYGAYLQD-DWP--LLTELGKMAML 228 (240)
Q Consensus 191 ~~~~pvsvK~r-----~~~~~~~~~~l~~-G~~--~itih~R~~~~ 228 (240)
+.+||.+--. -+-+...+++... ||| .|-.|.--...
T Consensus 270 -~~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~pd~A 314 (352)
T PRK13396 270 -THLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPNPAKA 314 (352)
T ss_pred -hCCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCCcccC
Confidence 3456655433 2334578888888 999 55555544333
No 298
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=73.79 E-value=13 Score=31.27 Aligned_cols=31 Identities=3% Similarity=-0.113 Sum_probs=20.9
Q ss_pred eEEeee-hhcH-HHHHHHHhC-CCCeEEEecccc
Q psy7344 196 IGCPQM-VAKR-GHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 196 vsvK~r-~~~~-~~~~~~l~~-G~~~itih~R~~ 226 (240)
+-+|+- +.++ ..+++.+.+ |+|.+|+|+-..
T Consensus 54 lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~~g 87 (213)
T TIGR01740 54 LDLKFADIPNTVKLQYESKIKQGADMVNVHGVAG 87 (213)
T ss_pred EEEeecchHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 345544 3333 456676778 999999998653
No 299
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=73.66 E-value=7.3 Score=34.53 Aligned_cols=136 Identities=15% Similarity=0.125 Sum_probs=72.3
Q ss_pred CCcccCCCchhHHHHHHHhhcccCCCceeecccccccCC--Ccccc--ccCchhhh-hhhhccc-ce-eeeCChhhHHHh
Q psy7344 34 YGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEPH--CDGID--INIGCPQM-VAKRGHY-GA-YLQDDWPLLTEL 106 (240)
Q Consensus 34 ~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap~--~~~~d--l~~gC~~~-i~~~g~~-ga-~l~~d~eli~~i 106 (240)
.|+++|++.+| +.++. ..+.|+.+|--.+++|. ....+ .+.|.+.. ++.+|-. |. -++.|..-+..+
T Consensus 112 IgAr~~rntdL----L~a~~--~t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~ip~m 185 (281)
T PRK12457 112 VPAFLARQTDL----VVAIA--KTGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQM 185 (281)
T ss_pred eCchhhchHHH----HHHHh--ccCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCCCcccchHHHHHH
Confidence 46999999988 55565 46799999866566552 22222 24454333 4554421 11 012222222223
Q ss_pred hhcccCCCCceeE------Eee-------cCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHH
Q psy7344 107 GFKTRSHMCGHSL------MFC-------GNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTN 172 (240)
Q Consensus 107 ~~~~~~~~~pviv------qi~-------g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~ 172 (240)
+... ...||++ |.- +++-+-...+++.. .-|+||+.+-.. |.+... -.-|.+ +-+++.+.+
T Consensus 186 k~~~--t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iEvH-pdP~~A-lsDg~q-~l~~~~~~~ 260 (281)
T PRK12457 186 KRTT--GDLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLEAH-PDPDRA-RCDGPS-ALPLDQLEP 260 (281)
T ss_pred HhhC--CCCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEEec-CCcccc-CCCccc-ccCHHHHHH
Confidence 2210 0235543 332 24455555666665 448999999888 554322 122333 347888888
Q ss_pred HHHHhhhc
Q psy7344 173 LVYSPNMV 180 (240)
Q Consensus 173 iv~~~~~~ 180 (240)
+++.++..
T Consensus 261 l~~~l~~i 268 (281)
T PRK12457 261 FLSQVKAL 268 (281)
T ss_pred HHHHHHHH
Confidence 87776654
No 300
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=72.96 E-value=35 Score=31.35 Aligned_cols=132 Identities=11% Similarity=0.071 Sum_probs=70.2
Q ss_pred ceeecccccccCCCccccccCchhhhhhhhcccceee-eCChh----hHHHhhhc----ccCCCCc--eeEEeecCCHHH
Q psy7344 60 PLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYL-QDDWP----LLTELGFK----TRSHMCG--HSLMFCGNDSKN 128 (240)
Q Consensus 60 p~~vk~~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l-~~d~e----li~~i~~~----~~~~~~p--vivqi~g~d~~~ 128 (240)
..+++.+.+.+||...++..+- ..++++|+.|..- ...++ .+++++.. .+..... +.+.+. ...++
T Consensus 33 ~~~l~iPivsa~MDtVte~~mA--iama~~Gglgvih~~~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg-~~~~~ 109 (352)
T PF00478_consen 33 NITLKIPIVSAPMDTVTESEMA--IAMARLGGLGVIHRNMSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVG-TRDDD 109 (352)
T ss_dssp SEEESSSEEE-SSTTTSSHHHH--HHHHHTTSEEEEESSSCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEE-SSTCH
T ss_pred CEeecCceEecCccccchHHHH--HHHHHhcCCceecCCCCHHHHHHHHhhhccccccccccccccceEEEEec-CCHHH
Confidence 3345566677899999988884 6778887766522 22232 33333321 1111223 333332 23344
Q ss_pred HHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHH
Q psy7344 129 LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHY 208 (240)
Q Consensus 129 ~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~ 208 (240)
++.+..+++.++|.|=|-.. |+ +-+.+.+.++.+++.. .++||.+== + -|.+-
T Consensus 110 ~er~~~L~~agvD~ivID~a-------~g--------~s~~~~~~ik~ik~~~----------~~~~viaGN-V-~T~e~ 162 (352)
T PF00478_consen 110 FERAEALVEAGVDVIVIDSA-------HG--------HSEHVIDMIKKIKKKF----------PDVPVIAGN-V-VTYEG 162 (352)
T ss_dssp HHHHHHHHHTT-SEEEEE-S-------ST--------TSHHHHHHHHHHHHHS----------TTSEEEEEE-E--SHHH
T ss_pred HHHHHHHHHcCCCEEEcccc-------Cc--------cHHHHHHHHHHHHHhC----------CCceEEecc-c-CCHHH
Confidence 55566666778888755332 11 3334446677777762 235655311 1 24566
Q ss_pred HHHHhC-CCCeEEE
Q psy7344 209 GAYLQD-DWPLLTE 221 (240)
Q Consensus 209 ~~~l~~-G~~~iti 221 (240)
++.|.+ |+|+|-+
T Consensus 163 a~~L~~aGad~vkV 176 (352)
T PF00478_consen 163 AKDLIDAGADAVKV 176 (352)
T ss_dssp HHHHHHTT-SEEEE
T ss_pred HHHHHHcCCCEEEE
Confidence 777888 9999988
No 301
>PLN02461 Probable pyruvate kinase
Probab=72.90 E-value=28 Score=33.60 Aligned_cols=93 Identities=10% Similarity=0.044 Sum_probs=59.0
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc--cCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l--~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
..+++.+| .+++-...+-+.++ .+||||+.+|= .|-.+ -.=|..=++|++..++.
T Consensus 235 ~~~IiAKI--E~~~av~nl~eIi~-~sDgIMVARGD---------LGvEip~e~vp~~Qk~II~~c~~~----------- 291 (511)
T PLN02461 235 SILLISKV--ENQEGLDNFDDILA-ESDAFMVARGD---------LGMEIPIEKIFLAQKMMIYKCNLA----------- 291 (511)
T ss_pred CCCEEEEE--CCHHHHHHHHHHHH-hcCEEEEeccc---------cccccCHHHhHHHHHHHHHHHHHc-----------
Confidence 46788888 44444444444443 38999999981 22222 12244446777766664
Q ss_pred CCeeeEEeee-hh-----------cHHHHHHHHhCCCCeEEEecccccccC
Q psy7344 192 NDINIGCPQM-VA-----------KRGHYGAYLQDDWPLLTELGKMAMLVG 230 (240)
Q Consensus 192 ~~~pvsvK~r-~~-----------~~~~~~~~l~~G~~~itih~R~~~~~~ 230 (240)
..||.+=+. ++ ..-|.+.++.+|+|++.+-|-|..-+|
T Consensus 292 -gkPVIvATQmLeSMi~np~PTRAEvsDVanAV~dG~D~vMLS~ETA~G~y 341 (511)
T PLN02461 292 -GKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAY 341 (511)
T ss_pred -CCCeEEeehhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEEechhcCCCC
Confidence 567776555 21 345778888889999999988877654
No 302
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=72.35 E-value=3.1 Score=36.03 Aligned_cols=25 Identities=4% Similarity=-0.226 Sum_probs=22.1
Q ss_pred hhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 202 VAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 202 ~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
..+..+.+...++ ||++||+|.|--
T Consensus 23 ~Pd~v~aA~~a~~aGAdgITvHlReD 48 (239)
T PRK05265 23 YPDPVRAALIAEQAGADGITVHLRED 48 (239)
T ss_pred CCCHHHHHHHHHHcCCCEEEecCCCC
Confidence 4688899999999 999999999963
No 303
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=72.25 E-value=39 Score=29.67 Aligned_cols=35 Identities=11% Similarity=-0.164 Sum_probs=24.4
Q ss_pred CCceeEEeecC-CHHHHHHHHHHHcc-CC-CEEEecCC
Q psy7344 114 MCGHSLMFCGN-DSKNLTEAAKLAEP-HC-DGIDINIG 148 (240)
Q Consensus 114 ~~pvivqi~g~-d~~~~~~aa~~le~-~~-d~Idin~g 148 (240)
..|++++-+.. +++++..+++.+.. |. +.+=+-+|
T Consensus 134 gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG 171 (266)
T PRK13398 134 KKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERG 171 (266)
T ss_pred CCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 57999987644 99999999998865 44 33334444
No 304
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=72.25 E-value=26 Score=31.58 Aligned_cols=57 Identities=16% Similarity=-0.043 Sum_probs=27.6
Q ss_pred cccccCCCccccccCchhhhhhhhcccceee--eCChhhHHHhhhcccC-CCCceeEEeecC
Q psy7344 66 LFIAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTELGFKTRS-HMCGHSLMFCGN 124 (240)
Q Consensus 66 ~~~lap~~~~~dl~~gC~~~i~~~g~~ga~l--~~d~eli~~i~~~~~~-~~~pvivqi~g~ 124 (240)
..+.+||...+.-.+ ...++..|+.|..- ..+++.+++-..+++. .+.|+.+++...
T Consensus 13 PIiqapM~~is~~~L--aaAVs~aGglG~l~~~~~~~~~l~~~i~~~~~~t~~pfgvnl~~~ 72 (330)
T PF03060_consen 13 PIIQAPMGGISTPEL--AAAVSNAGGLGFLGAGGLTPEQLREEIRKIRALTDKPFGVNLFLP 72 (330)
T ss_dssp SEEE---TTTSSHHH--HHHHHHTTSBEEEECTTSSHHHHHHHHHHHHHH-SS-EEEEEETT
T ss_pred CEEcCCCCCCChHHH--HHHHHhCCCEeeccccccChHHHHHHHHHHHhhcccccccccccc
Confidence 345678876443344 34567777777744 2235444433322221 235899988754
No 305
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=71.57 E-value=40 Score=29.72 Aligned_cols=87 Identities=14% Similarity=-0.011 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHcc-CCCEEEecCCCchhhh-----hcccccccc--cCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 124 NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVA-----KRGHYGAYL--QDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 124 ~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~-----~~~g~G~~l--~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
.|.+...++++.+.+ |+|.|||++==..+.+ .+.+.. +| ....+.+-++++.+++.. .++|
T Consensus 28 P~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~r-AL~~g~t~~~~lel~~~~r~~~----------~~~P 96 (265)
T COG0159 28 PDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLR-ALAAGVTLEDTLELVEEIRAKG----------VKVP 96 (265)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHH-HHHCCCCHHHHHHHHHHHHhcC----------CCCC
Confidence 377889999998755 8999999753222222 111111 11 235666667777777541 5667
Q ss_pred eEEeeehh-----cHHHHHHHHhC-CCCeEEE
Q psy7344 196 IGCPQMVA-----KRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 196 vsvK~r~~-----~~~~~~~~l~~-G~~~iti 221 (240)
+..=.=++ -...|.+.+.+ |+|++.+
T Consensus 97 ivlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv 128 (265)
T COG0159 97 IVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV 128 (265)
T ss_pred EEEEEeccHHHHhhHHHHHHHHHHcCCCEEEe
Confidence 76533322 24568888888 9888876
No 306
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=71.53 E-value=9.9 Score=34.90 Aligned_cols=136 Identities=13% Similarity=0.093 Sum_probs=73.0
Q ss_pred CCcccCCCchhHHHHHHHhhcccCCCceeeccccc--ccCCCcccc--ccCchhhhhhhhcccceee------eCChhhH
Q psy7344 34 YGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFI--AEPHCDGID--INIGCPQMVAKRGHYGAYL------QDDWPLL 103 (240)
Q Consensus 34 ~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~--lap~~~~~d--l~~gC~~~i~~~g~~ga~l------~~d~eli 103 (240)
-||+.|.+.+| +.++. ..+.|+.+|.-.. +..|....+ ...|..+.+..|.+++.|. ..|+..+
T Consensus 190 Iga~~~~n~~L----L~~va--~t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai 263 (352)
T PRK13396 190 VGARNMQNFSL----LKKVG--AQDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVI 263 (352)
T ss_pred ECcccccCHHH----HHHHH--ccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHH
Confidence 46789999888 44555 4678998874322 112221111 1344334333333333332 3345555
Q ss_pred HHhhhcccCCCCceeEEeec--CCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 104 TELGFKTRSHMCGHSLMFCG--NDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 104 ~~i~~~~~~~~~pvivqi~g--~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
..++... ..|+++.-.. +.-+....+++.. ..|+||+.|...+--..+.. -|+ -.-+|+.++++++.++..
T Consensus 264 ~~lk~~~---~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~pd~Als--D~~-qsl~p~~~~~l~~~i~~i 337 (352)
T PRK13396 264 PVLRSLT---HLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPNPAKALS--DGP-QSLTPDRFDRLMQELAVI 337 (352)
T ss_pred HHHHHhh---CCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCCcccCCC--hhh-hcCCHHHHHHHHHHHHHH
Confidence 5554322 3677765431 3233333444443 45899888887733233322 233 246899999999988875
Q ss_pred c
Q psy7344 181 H 181 (240)
Q Consensus 181 ~ 181 (240)
.
T Consensus 338 ~ 338 (352)
T PRK13396 338 G 338 (352)
T ss_pred H
Confidence 3
No 307
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=71.41 E-value=21 Score=33.22 Aligned_cols=99 Identities=12% Similarity=0.019 Sum_probs=60.0
Q ss_pred CCh-hhHHHhhhcccC-CCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHH
Q psy7344 98 DDW-PLLTELGFKTRS-HMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175 (240)
Q Consensus 98 ~d~-eli~~i~~~~~~-~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~ 175 (240)
.|| +-..+.+.++.. .+.|++ |++.|++-+.++++.+... - |- .+++-..|++.+.++..
T Consensus 80 ~DPae~fa~~vk~V~~a~~~PLI--L~~~D~evl~aale~~~~~--------k-pL-------L~aAt~eNyk~m~~lA~ 141 (386)
T PF03599_consen 80 GDPAEEFAKAVKKVAEAVDVPLI--LCGCDPEVLKAALEACAGK--------K-PL-------LYAATEENYKAMAALAK 141 (386)
T ss_dssp GSTHHHHHHHHHHHHHC-SSEEE--EESSHHHHHHHHHHHTTTS-----------E-------EEEEBTTTHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhcCCCEE--EEeCCHHHHHHHHHHhCcC--------C-cE-------EeEcCHHHHHHHHHHHH
Confidence 455 555554444432 245654 4567888888888777541 1 11 22333568887766654
Q ss_pred HhhhccccccCCCCCCCCeeeEEeee--hhcHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 176 SPNMVHFVIAEPHCDGNDINIGCPQM--VAKRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 176 ~~~~~~~~i~~~~~~~~~~pvsvK~r--~~~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
. .+.||.++-- ++...++...+.+ |.+.|.+..=|+...
T Consensus 142 ~---------------y~~pl~v~sp~Dln~lk~Ln~~l~~~Gv~dIVlDpgt~~lG 183 (386)
T PF03599_consen 142 E---------------YGHPLIVSSPIDLNLLKQLNIKLTELGVKDIVLDPGTRALG 183 (386)
T ss_dssp H---------------CT-EEEEE-SSCHHHHHHHHHHHHTTT-GGEEEE---SSTT
T ss_pred H---------------cCCeEEEEecccHHHHHHHHHHHHhcCcccEEecCCcccch
Confidence 3 5779999883 7888999999999 999999988776644
No 308
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=71.20 E-value=15 Score=32.35 Aligned_cols=30 Identities=10% Similarity=0.069 Sum_probs=18.9
Q ss_pred CCceeEEeecCCHHH-HHHHHHHHcc-CCCEE
Q psy7344 114 MCGHSLMFCGNDSKN-LTEAAKLAEP-HCDGI 143 (240)
Q Consensus 114 ~~pvivqi~g~d~~~-~~~aa~~le~-~~d~I 143 (240)
+.||+.-+++.||.. +....+.+.+ |+.||
T Consensus 81 ~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV 112 (268)
T PF09370_consen 81 DTPVIAGVCATDPFRDMDRFLDELKELGFSGV 112 (268)
T ss_dssp SS-EEEEE-TT-TT--HHHHHHHHHHHT-SEE
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHhCCceE
Confidence 479999999999974 5556676654 88887
No 309
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=71.08 E-value=41 Score=29.30 Aligned_cols=88 Identities=15% Similarity=0.052 Sum_probs=41.2
Q ss_pred HHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc-cccccCCCCCCCCeeeEEeee-----
Q psy7344 129 LTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV-HFVIAEPHCDGNDINIGCPQM----- 201 (240)
Q Consensus 129 ~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~-~~~i~~~~~~~~~~pvsvK~r----- 201 (240)
+.+..+.+.+ |++.|+|+-|.-. +.+ +.-.++++.+++. ..|+ ..|.-|-.
T Consensus 86 ~~~yl~~~k~lGf~~IEiSdGti~------------l~~-~~r~~~I~~~~~~Gf~v~---------~EvG~K~~~~~~~ 143 (244)
T PF02679_consen 86 FDEYLEECKELGFDAIEISDGTID------------LPE-EERLRLIRKAKEEGFKVL---------SEVGKKDPESDFS 143 (244)
T ss_dssp HHHHHHHHHHCT-SEEEE--SSS---------------H-HHHHHHHHHHCCTTSEEE---------EEES-SSHHHHTT
T ss_pred HHHHHHHHHHcCCCEEEecCCcee------------CCH-HHHHHHHHHHHHCCCEEe---------ecccCCCchhccc
Confidence 3344455444 8999999988411 223 3333555544442 2111 01222222
Q ss_pred --hhcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCCC
Q psy7344 202 --VAKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGSW 238 (240)
Q Consensus 202 --~~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~adw 238 (240)
....++.++.-.+ ||+.|++-+|-....+.|+...+|
T Consensus 144 ~~~~~~i~~~~~dLeAGA~~ViiEarEsG~~Gi~~~~g~~ 183 (244)
T PF02679_consen 144 LDPEELIEQAKRDLEAGADKVIIEARESGKGGIYDNDGEV 183 (244)
T ss_dssp --CCHHHHHHHHHHHHTECEEEE--TTT--STTB-TTS-B
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeeeccCCCCccCCCCCc
Confidence 1244566666667 999999999965555666666665
No 310
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=71.06 E-value=38 Score=28.92 Aligned_cols=99 Identities=11% Similarity=0.045 Sum_probs=55.9
Q ss_pred CChhhHHHhhhcccCCCCceeEEee--cC--CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHH
Q psy7344 98 DDWPLLTELGFKTRSHMCGHSLMFC--GN--DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTN 172 (240)
Q Consensus 98 ~d~eli~~i~~~~~~~~~pvivqi~--g~--d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~ 172 (240)
.+|+.+.+-..+++..-.|+.+++. .+ +.++..++++...+ |+|.|-.|-|=. .| ...++.++.
T Consensus 103 g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~~--------~~---gat~~~v~~ 171 (221)
T PRK00507 103 GDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGFS--------TG---GATVEDVKL 171 (221)
T ss_pred CCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCC--------CC---CCCHHHHHH
Confidence 3455544333222221134555552 22 45677788887654 899999888821 11 257888777
Q ss_pred HHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEE
Q psy7344 173 LVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLT 220 (240)
Q Consensus 173 iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~it 220 (240)
+.+.+... +++-+=..+.+..+..++++.|++.|=
T Consensus 172 m~~~~~~~-------------~~IKasGGIrt~~~a~~~i~aGA~riG 206 (221)
T PRK00507 172 MRETVGPR-------------VGVKASGGIRTLEDALAMIEAGATRLG 206 (221)
T ss_pred HHHHhCCC-------------ceEEeeCCcCCHHHHHHHHHcCcceEc
Confidence 77664322 233332236677777777766888763
No 311
>PLN02762 pyruvate kinase complex alpha subunit
Probab=70.90 E-value=38 Score=32.73 Aligned_cols=93 Identities=13% Similarity=0.081 Sum_probs=58.2
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc--cCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l--~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
..+++.+| .+++-...+-+.++ .+||||+.+|= .|-.+ -.=|..=++|++..+..
T Consensus 246 ~~~IiAKI--E~~~av~nl~eIi~-~sDgiMVARGD---------LGvEip~e~vp~~QK~II~~c~~~----------- 302 (509)
T PLN02762 246 DIGVIAKI--ESLDSLKNLEEIIR-ASDGAMVARGD---------LGAQIPLEQVPSVQEKIVRLCRQL----------- 302 (509)
T ss_pred CceEEEEe--CCHHHHHHHHHHHH-hcCEEEEecCc---------cccccCHHHhHHHHHHHHHHHHHh-----------
Confidence 35788887 44443333333333 48999999981 22222 22355556777776654
Q ss_pred CCeeeEEeee-hh-----------cHHHHHHHHhCCCCeEEEecccccccC
Q psy7344 192 NDINIGCPQM-VA-----------KRGHYGAYLQDDWPLLTELGKMAMLVG 230 (240)
Q Consensus 192 ~~~pvsvK~r-~~-----------~~~~~~~~l~~G~~~itih~R~~~~~~ 230 (240)
..||.+=+. ++ ..-|.+.++.+|+|++.+-|-|..-+|
T Consensus 303 -gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVlDGtDavMLSgETA~G~y 352 (509)
T PLN02762 303 -NKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRADALMLSGESAMGLY 352 (509)
T ss_pred -CCCEEEECchHHhhhhCCCCCchhHHHHHHHHHhCCCEEEEcchhcCCCC
Confidence 557776555 22 345778888889999999888876554
No 312
>PLN02979 glycolate oxidase
Probab=70.52 E-value=37 Score=31.34 Aligned_cols=98 Identities=9% Similarity=0.100 Sum_probs=62.2
Q ss_pred CceeEEee-cCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhh----cccc---------------------------c-
Q psy7344 115 CGHSLMFC-GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAK----RGHY---------------------------G- 160 (240)
Q Consensus 115 ~pvivqi~-g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~----~~g~---------------------------G- 160 (240)
.+...|+. ..|.+...+..++.++ |+.+|-+..=.|..-.. +.++ +
T Consensus 121 ~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (366)
T PLN02979 121 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLAS 200 (366)
T ss_pred CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHHH
Confidence 47888985 4688888888888866 78887775554443000 0000 0
Q ss_pred ---ccc--cCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 161 ---AYL--QDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 161 ---~~l--~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
..+ ..+|+. ++++++. .++||.+|.-. ..+-++.+.+ |+|+|.|-+.-..|.
T Consensus 201 ~~~~~~~~~ltW~d----l~wlr~~-----------~~~PvivKgV~--~~~dA~~a~~~Gvd~I~VsnhGGrql 258 (366)
T PLN02979 201 YVAGQIDRTLSWKD----VQWLQTI-----------TKLPILVKGVL--TGEDARIAIQAGAAGIIVSNHGARQL 258 (366)
T ss_pred HHhhcCCCCCCHHH----HHHHHhc-----------cCCCEEeecCC--CHHHHHHHHhcCCCEEEECCCCcCCC
Confidence 000 123544 4444544 78899999974 3466777888 999999977766554
No 313
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=70.36 E-value=41 Score=30.92 Aligned_cols=92 Identities=16% Similarity=0.055 Sum_probs=59.4
Q ss_pred hHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhcc
Q psy7344 102 LLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVH 181 (240)
Q Consensus 102 li~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~ 181 (240)
.+..++..+ ..|++.-| .+++.-|.+.++.|+|.|-||-|= +...++.++++++..++.-
T Consensus 71 al~~I~~~~---~iPlvADI----HFd~~lAl~a~~~G~~~iRINPGN-------------ig~~~~~v~~vv~~ak~~~ 130 (360)
T PRK00366 71 ALPEIKKQL---PVPLVADI----HFDYRLALAAAEAGADALRINPGN-------------IGKRDERVREVVEAAKDYG 130 (360)
T ss_pred hHHHHHHcC---CCCEEEec----CCCHHHHHHHHHhCCCEEEECCCC-------------CCchHHHHHHHHHHHHHCC
Confidence 344444433 47887643 234455667778899999999991 1234889999999988841
Q ss_pred ccccCCCCCCCCeeeEEeee------------------hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 182 FVIAEPHCDGNDINIGCPQM------------------VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 182 ~~i~~~~~~~~~~pvsvK~r------------------~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..+.+-++-- +++..++++.|++ |-+.|.+-.
T Consensus 131 ----------ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~ 181 (360)
T PRK00366 131 ----------IPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISV 181 (360)
T ss_pred ----------CCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEE
Confidence 2222223222 3456788899999 998887743
No 314
>PLN02623 pyruvate kinase
Probab=70.33 E-value=29 Score=34.02 Aligned_cols=94 Identities=7% Similarity=0.011 Sum_probs=57.0
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
...+++|| .+++-...+-+.++ ++|+|++++| .....- | +..-|...++|++..++. .
T Consensus 319 ~~~iiakI--Et~eaVeNldeIl~-g~DgImIgrg---DLgvel--g--~~~v~~~qk~Ii~~~~~~------------g 376 (581)
T PLN02623 319 DIHVIVKI--ESADSIPNLHSIIT-ASDGAMVARG---DLGAEL--P--IEEVPLLQEEIIRRCRSM------------G 376 (581)
T ss_pred cceEEEEE--CCHHHHHhHHHHHH-hCCEEEECcc---hhhhhc--C--cHHHHHHHHHHHHHHHHh------------C
Confidence 45688888 55554444444444 8999999888 221111 1 134466778888877764 4
Q ss_pred eeeEEeee-h-----------hcHHHHHHHHhCCCCeEEEeccccccc
Q psy7344 194 INIGCPQM-V-----------AKRGHYGAYLQDDWPLLTELGKMAMLV 229 (240)
Q Consensus 194 ~pvsvK~r-~-----------~~~~~~~~~l~~G~~~itih~R~~~~~ 229 (240)
+|+.+=.. + ....+.+.++.+|+|++.+-+=|..-+
T Consensus 377 KpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~ 424 (581)
T PLN02623 377 KPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGK 424 (581)
T ss_pred CCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCc
Confidence 57765332 1 123566777666999999866554433
No 315
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=69.94 E-value=31 Score=31.12 Aligned_cols=86 Identities=17% Similarity=0.137 Sum_probs=54.1
Q ss_pred CceeEEeecC--CHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 115 CGHSLMFCGN--DSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 115 ~pvivqi~g~--d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
.|+...+... +++++.+.++.+ +.|++++.|..|.... +...++...++++++++.+ +
T Consensus 127 v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~----------~~~~~~~d~~~v~~ir~~~---------g 187 (357)
T cd03316 127 VRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDS----------GGEDLREDLARVRAVREAV---------G 187 (357)
T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCc----------chHHHHHHHHHHHHHHHhh---------C
Confidence 4665555444 578887776655 5689999997773211 0123555566777777752 1
Q ss_pred CCeeeEEeee----hhcHHHHHHHHhC-CCCeE
Q psy7344 192 NDINIGCPQM----VAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 192 ~~~pvsvK~r----~~~~~~~~~~l~~-G~~~i 219 (240)
.++++.+..- .++..++++.+++ |+.++
T Consensus 188 ~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~i 220 (357)
T cd03316 188 PDVDLMVDANGRWDLAEAIRLARALEEYDLFWF 220 (357)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhCccCCCeE
Confidence 2455655443 3567888899988 98776
No 316
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=69.88 E-value=14 Score=32.74 Aligned_cols=59 Identities=12% Similarity=-0.093 Sum_probs=38.5
Q ss_pred hhhcccceee-eCC---hhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCEEEec
Q psy7344 87 AKRGHYGAYL-QDD---WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDIN 146 (240)
Q Consensus 87 ~~~g~~ga~l-~~d---~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin 146 (240)
...|.+|.+. +.. .++++..+..+. ...||++.+.+++..+..+.++..++ |+|++++-
T Consensus 39 ~v~GstGE~~~Ls~~Er~~l~~~~~~~~~-g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~ 102 (294)
T TIGR02313 39 SVGGTSGEPGSLTLEERKQAIENAIDQIA-GRIPFAPGTGALNHDETLELTKFAEEAGADAAMVI 102 (294)
T ss_pred EECccCcccccCCHHHHHHHHHHHHHHhC-CCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEc
Confidence 3345566644 222 223333343332 34789999888899988999998876 89999983
No 317
>PTZ00066 pyruvate kinase; Provisional
Probab=69.88 E-value=32 Score=33.23 Aligned_cols=93 Identities=12% Similarity=0.037 Sum_probs=58.0
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc--cCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l--~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
..+++.+| .+++-...+-+.++ .+||||+.+|= .|-.+ -.=|..=++|++..+..
T Consensus 251 ~~~IiAKI--E~~~av~NldeIl~-~sDGIMVARGD---------LGvEip~e~vp~~QK~II~~c~~~----------- 307 (513)
T PTZ00066 251 HIKIIPKI--ENIEGLINFDEILA-ESDGIMVARGD---------LGMEIPPEKVFLAQKMMISKCNVA----------- 307 (513)
T ss_pred CceEEEEE--CCHHHHHHHHHHHH-hcCEEEEEccc---------cccccChHHcchHHHHHHHHHHHh-----------
Confidence 35788887 44443333333333 37999999881 22222 22344556777766664
Q ss_pred CCeeeEEeee-h-----------hcHHHHHHHHhCCCCeEEEecccccccC
Q psy7344 192 NDINIGCPQM-V-----------AKRGHYGAYLQDDWPLLTELGKMAMLVG 230 (240)
Q Consensus 192 ~~~pvsvK~r-~-----------~~~~~~~~~l~~G~~~itih~R~~~~~~ 230 (240)
..||.+=+. + ...-|.+.++.+|+|++.+-|-|..-+|
T Consensus 308 -gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~DG~DavMLSgETA~G~y 357 (513)
T PTZ00066 308 -GKPVITATQMLESMIKNPRPTRAESTDVANAVLDGTDCVMLSGETANGKF 357 (513)
T ss_pred -CCCEEEechhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEecchhcCCcC
Confidence 567776555 2 1345788888889999999888877654
No 318
>PRK06852 aldolase; Validated
Probab=69.60 E-value=21 Score=32.05 Aligned_cols=91 Identities=15% Similarity=0.055 Sum_probs=56.6
Q ss_pred CCceeEEe--ec------CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccc
Q psy7344 114 MCGHSLMF--CG------NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVI 184 (240)
Q Consensus 114 ~~pvivqi--~g------~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i 184 (240)
..|+++-+ +| .|++.+.-++++..+ |+|.|-++.- . .++ -.+++.+++++++.
T Consensus 167 GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~--~---~~~------~g~~e~f~~vv~~~------- 228 (304)
T PRK06852 167 GLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYP--K---KEG------ANPAELFKEAVLAA------- 228 (304)
T ss_pred CCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCC--C---cCC------CCCHHHHHHHHHhC-------
Confidence 46776533 23 355667777877654 8999988642 0 011 14788999988753
Q ss_pred cCCCCCCCCeeeEEeee----hhcHHHHHH-HHhC-CCCeEEEecccccccC
Q psy7344 185 AEPHCDGNDINIGCPQM----VAKRGHYGA-YLQD-DWPLLTELGKMAMLVG 230 (240)
Q Consensus 185 ~~~~~~~~~~pvsvK~r----~~~~~~~~~-~l~~-G~~~itih~R~~~~~~ 230 (240)
..+||.+=.- ..++.+.++ .++. |+.++++ ||.-.|+.
T Consensus 229 -------g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~-GRNIfQ~~ 272 (304)
T PRK06852 229 -------GRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNAT-GRNIHQKP 272 (304)
T ss_pred -------CCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeee-chhhhcCC
Confidence 1334443222 334555554 4465 9999999 99999974
No 319
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=69.37 E-value=19 Score=32.08 Aligned_cols=77 Identities=8% Similarity=-0.174 Sum_probs=48.2
Q ss_pred HHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--h---hcHH
Q psy7344 133 AKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM--V---AKRG 206 (240)
Q Consensus 133 a~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r--~---~~~~ 206 (240)
|+++++ |+.+|-+.-+ +... .-|+.-.-...++.+...++.+..+ +++||+|-+. + .+..
T Consensus 31 A~la~~aGF~al~~sg~-~vA~--slG~pD~~~~t~~e~~~~vrrI~~a-----------~~lPv~vD~dtGfG~~~nva 96 (289)
T COG2513 31 ALLAERAGFKALYLSGA-GVAA--SLGLPDLGITTLDEVLADARRITDA-----------VDLPVLVDIDTGFGEALNVA 96 (289)
T ss_pred HHHHHHcCCeEEEeccH-HHHH--hcCCCccccccHHHHHHHHHHHHhh-----------cCCceEEeccCCCCcHHHHH
Confidence 445544 7888877433 2211 1111111123467777777777777 8999999988 3 3456
Q ss_pred HHHHHHhC-CCCeEEEec
Q psy7344 207 HYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 207 ~~~~~l~~-G~~~itih~ 223 (240)
+..+.+++ |+.+++|--
T Consensus 97 rtV~~~~~aG~agi~iED 114 (289)
T COG2513 97 RTVRELEQAGAAGIHIED 114 (289)
T ss_pred HHHHHHHHcCcceeeeee
Confidence 67777888 999999843
No 320
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=69.32 E-value=17 Score=31.32 Aligned_cols=78 Identities=10% Similarity=-0.146 Sum_probs=52.4
Q ss_pred HHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh-----hcHH
Q psy7344 133 AKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV-----AKRG 206 (240)
Q Consensus 133 a~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~-----~~~~ 206 (240)
++++++ |+++|-+.-..-.. . .|+-...+..++.+...++.+..+ ..+|+++-+.. ..+.
T Consensus 22 A~~~e~~G~~ai~~s~~~~~~--s-~G~pD~~~~~~~e~~~~~~~I~~~-----------~~~Pv~~D~~~G~g~~~~~~ 87 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVAA--S-LGLPDGGLLTLDEVLAAVRRIARA-----------VDLPVIADADTGYGNALNVA 87 (243)
T ss_pred HHHHHHcCCCEEEeccHHHHH--h-cCCCCCCcCCHHHHHHHHHHHHhh-----------ccCCEEEEcCCCCCCHHHHH
Confidence 455555 78888886553222 1 133333355677777777777776 68899998883 2456
Q ss_pred HHHHHHhC-CCCeEEEecc
Q psy7344 207 HYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 207 ~~~~~l~~-G~~~itih~R 224 (240)
+.++.+.+ |+++|.+-..
T Consensus 88 ~~v~~~~~~G~~gv~iED~ 106 (243)
T cd00377 88 RTVRELEEAGAAGIHIEDQ 106 (243)
T ss_pred HHHHHHHHcCCEEEEEecC
Confidence 77888889 9999999433
No 321
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=69.12 E-value=22 Score=29.66 Aligned_cols=73 Identities=12% Similarity=0.083 Sum_probs=41.5
Q ss_pred HHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEE--eee-h--h
Q psy7344 129 LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGC--PQM-V--A 203 (240)
Q Consensus 129 ~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsv--K~r-~--~ 203 (240)
..++.+.+..|+|.||+-.- .|+..-.+++.+.+-+..+.+.. ..+|+-+ -.. + +
T Consensus 72 ~~eve~A~~~GAdevdvv~~----------~g~~~~~~~~~~~~ei~~v~~~~----------~g~~lkvI~e~~~l~~~ 131 (203)
T cd00959 72 VAEAREAIADGADEIDMVIN----------IGALKSGDYEAVYEEIAAVVEAC----------GGAPLKVILETGLLTDE 131 (203)
T ss_pred HHHHHHHHHcCCCEEEEeec----------HHHHhCCCHHHHHHHHHHHHHhc----------CCCeEEEEEecCCCCHH
Confidence 33455556679999996433 11212357776666666666651 1234332 111 2 3
Q ss_pred cHHHHHHHHhC-CCCeEEE
Q psy7344 204 KRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 204 ~~~~~~~~l~~-G~~~iti 221 (240)
.....++...+ |+|+|-.
T Consensus 132 ~i~~a~ria~e~GaD~IKT 150 (203)
T cd00959 132 EIIKACEIAIEAGADFIKT 150 (203)
T ss_pred HHHHHHHHHHHhCCCEEEc
Confidence 35667778888 9999876
No 322
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=68.85 E-value=40 Score=28.56 Aligned_cols=34 Identities=9% Similarity=-0.022 Sum_probs=29.3
Q ss_pred CceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIG 148 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~g 148 (240)
.+++..+++.++++..+.++.+.+ |++.||+.+-
T Consensus 15 ~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~ 49 (212)
T PRK05718 15 GPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLR 49 (212)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 578888899999999999999876 6999999754
No 323
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=68.78 E-value=15 Score=32.57 Aligned_cols=31 Identities=26% Similarity=0.249 Sum_probs=25.3
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEe
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDI 145 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idi 145 (240)
..|+++.+.. +..+..+.++..++ |+|++++
T Consensus 74 ~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~ 105 (296)
T TIGR03249 74 KVPVYTGVGG-NTSDAIEIARLAEKAGADGYLL 105 (296)
T ss_pred CCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEE
Confidence 4689999864 68888888888876 8999988
No 324
>PRK06247 pyruvate kinase; Provisional
Probab=68.70 E-value=26 Score=33.52 Aligned_cols=93 Identities=8% Similarity=0.006 Sum_probs=58.3
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc--cCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l--~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
..++++|| .+++-+..+-+.++. +|+|++++| . .|..+ ..-|...+++++..++.
T Consensus 211 ~~~iiaKI--Et~eav~nldeI~~~-~DgImVaRG---D------Lgve~g~~~v~~~qk~ii~~~~~~----------- 267 (476)
T PRK06247 211 RVPVMAKI--EKPQAIDRLEAIVEA-SDAIMVARG---D------LGVEVPLEQVPLIQKRIIRAARRA----------- 267 (476)
T ss_pred cCeEEEEE--CCHHHHHhHHHHHHH-cCEEEEccc---h------hccccCHHHHHHHHHHHHHHHHHh-----------
Confidence 35688888 444444433343333 899999888 2 22222 23356667777776664
Q ss_pred CCeeeEEeee-hh-----------cHHHHHHHHhCCCCeEEEecccccccC
Q psy7344 192 NDINIGCPQM-VA-----------KRGHYGAYLQDDWPLLTELGKMAMLVG 230 (240)
Q Consensus 192 ~~~pvsvK~r-~~-----------~~~~~~~~l~~G~~~itih~R~~~~~~ 230 (240)
..|+.+=+. ++ ..-|.+.++.+|+|++.+-+-|..-+|
T Consensus 268 -gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~dG~DavMLS~ETA~G~y 317 (476)
T PRK06247 268 -GKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGADAVMLSAETASGKY 317 (476)
T ss_pred -CCCEEEECchHHHhhcCCCCCcchhHHHHHHHHhCCcEEEEcchhcCCCC
Confidence 456655444 21 345778888889999999888876554
No 325
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=68.66 E-value=41 Score=27.77 Aligned_cols=136 Identities=13% Similarity=0.110 Sum_probs=73.1
Q ss_pred hhHHHHHHHhhcccCCCceeecccccccCCCccccc-cCchhhhhhhhcccceeeeCChhhHHHhhhcccCCCCceeEEe
Q psy7344 43 PLLTELVVHFSWVSKNGPLFMGPLFIAEPHCDGIDI-NIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMF 121 (240)
Q Consensus 43 ~l~~~iv~ql~~~~~~~p~~vk~~~~lap~~~~~dl-~~gC~~~i~~~g~~ga~l~~d~eli~~i~~~~~~~~~pvivqi 121 (240)
-.+.+++.++. ..+..++|... +++++-- ..| .+.+...++-..-.+..+.+++..+.. ....+--+
T Consensus 31 ~~l~~~v~~~~--~~gK~vfVHiD-----li~Gl~~D~~~-i~~L~~~~~~dGIISTk~~~i~~Ak~~----gl~tIqRi 98 (175)
T PF04309_consen 31 GNLKDIVKRLK--AAGKKVFVHID-----LIEGLSRDEAG-IEYLKEYGKPDGIISTKSNLIKRAKKL----GLLTIQRI 98 (175)
T ss_dssp CCHHHHHHHHH--HTT-EEEEECC-----GEETB-SSHHH-HHHHHHTT--SEEEESSHHHHHHHHHT----T-EEEEEE
T ss_pred HHHHHHHHHHH--HcCCEEEEEeh-----hcCCCCCCHHH-HHHHHHcCCCcEEEeCCHHHHHHHHHc----CCEEEEEe
Confidence 34556677776 45677776522 1111111 222 234444332222345557777665431 22223335
Q ss_pred ecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEee
Q psy7344 122 CGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQ 200 (240)
Q Consensus 122 ~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~ 200 (240)
+--|...+....+.+++ ..|.||+=-|+ +-++++.+++. .++|+.+=.
T Consensus 99 FliDS~al~~~~~~i~~~~PD~vEilPg~--------------------~p~vi~~i~~~-----------~~~PiIAGG 147 (175)
T PF04309_consen 99 FLIDSSALETGIKQIEQSKPDAVEILPGV--------------------MPKVIKKIREE-----------TNIPIIAGG 147 (175)
T ss_dssp E-SSHHHHHHHHHHHHHHT-SEEEEESCC--------------------HHHHHCCCCCC-----------CSS-EEEES
T ss_pred eeecHHHHHHHHHHHhhcCCCEEEEchHH--------------------HHHHHHHHHHh-----------cCCCEEeec
Confidence 56798999999999976 79999996662 11345555554 567877666
Q ss_pred ehhcHHHHHHHHhCCCCeEEE
Q psy7344 201 MVAKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 201 r~~~~~~~~~~l~~G~~~iti 221 (240)
-+.+-++.-++|..|+.+|+-
T Consensus 148 LI~~~e~v~~al~aGa~aVST 168 (175)
T PF04309_consen 148 LIRTKEDVEEALKAGADAVST 168 (175)
T ss_dssp S--SHHHHHHHCCTTCEEEEE
T ss_pred ccCCHHHHHHHHHcCCEEEEc
Confidence 566666666666669999886
No 326
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=68.60 E-value=28 Score=31.17 Aligned_cols=93 Identities=12% Similarity=0.035 Sum_probs=52.1
Q ss_pred hhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 101 PLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 101 eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
+++..++. ....++.++ .+.+ .+.+..+.|+|+|-+.-. -..++.|. ..+++++.++.+.
T Consensus 100 ~~i~~lk~----~g~~v~~~v--~s~~---~a~~a~~~GaD~Ivv~g~-----eagGh~g~--~~~~~ll~~v~~~---- 159 (307)
T TIGR03151 100 KYIPRLKE----NGVKVIPVV--ASVA---LAKRMEKAGADAVIAEGM-----ESGGHIGE--LTTMALVPQVVDA---- 159 (307)
T ss_pred HHHHHHHH----cCCEEEEEc--CCHH---HHHHHHHcCCCEEEEECc-----ccCCCCCC--CcHHHHHHHHHHH----
Confidence 35555543 234555554 3333 222333448999876221 01122232 2467777777654
Q ss_pred cccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEecc
Q psy7344 181 HFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGK 224 (240)
Q Consensus 181 ~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R 224 (240)
.++||.+-..+.+..+++.++..|++++.+--|
T Consensus 160 -----------~~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~ 192 (307)
T TIGR03151 160 -----------VSIPVIAAGGIADGRGMAAAFALGAEAVQMGTR 192 (307)
T ss_pred -----------hCCCEEEECCCCCHHHHHHHHHcCCCEeecchH
Confidence 456777777777777777777668888887433
No 327
>PRK02227 hypothetical protein; Provisional
Probab=68.03 E-value=27 Score=30.29 Aligned_cols=76 Identities=20% Similarity=0.114 Sum_probs=48.3
Q ss_pred HHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee-h--h
Q psy7344 127 KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-V--A 203 (240)
Q Consensus 127 ~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-~--~ 203 (240)
.+..|+...++.|+|.||+=- | ..|-.|+ ..|+.+++|++.+.. ..|||..+- + .
T Consensus 8 r~~eEA~~Al~~GaDiIDvK~--P----~~GaLGA---~~p~vir~Iv~~~~~-------------~~pvSAtiGD~p~~ 65 (238)
T PRK02227 8 RNLEEALEALAGGADIIDVKN--P----KEGSLGA---NFPWVIREIVAAVPG-------------RKPVSATIGDVPYK 65 (238)
T ss_pred CCHHHHHHHHhcCCCEEEccC--C----CCCCCCC---CCHHHHHHHHHHhCC-------------CCCceeeccCCCCC
Confidence 344566677778999999832 2 2233343 468888888887643 359999888 2 2
Q ss_pred c--HHHHHHHHhC-CCCeEEEeccc
Q psy7344 204 K--RGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 204 ~--~~~~~~~l~~-G~~~itih~R~ 225 (240)
. ...-+..+.. |+|+|-+ |..
T Consensus 66 p~~~~~aa~~~a~~GvDyVKv-Gl~ 89 (238)
T PRK02227 66 PGTISLAALGAAATGADYVKV-GLY 89 (238)
T ss_pred chHHHHHHHHHHhhCCCEEEE-cCC
Confidence 1 2233334455 9999988 654
No 328
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=67.93 E-value=26 Score=29.90 Aligned_cols=78 Identities=10% Similarity=-0.011 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHccCCCEEEecCCCchhhhhccccc-ccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh
Q psy7344 124 NDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYG-AYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV 202 (240)
Q Consensus 124 ~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G-~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~ 202 (240)
.|..++.+..-....|+|.|---++ |-++ +....+|+. ++++.+.+ .+.+|.+-.|+
T Consensus 132 AD~St~ee~l~a~~~G~D~IGTTLs--------GYT~~~~~~~~pDf--~lvk~l~~------------~~~~vIAEGr~ 189 (229)
T COG3010 132 ADCSTFEEGLNAHKLGFDIIGTTLS--------GYTGYTEKPTEPDF--QLVKQLSD------------AGCRVIAEGRY 189 (229)
T ss_pred eccCCHHHHHHHHHcCCcEEecccc--------cccCCCCCCCCCcH--HHHHHHHh------------CCCeEEeeCCC
Confidence 5666666766666678888754433 2222 123344444 34444433 25688888888
Q ss_pred hcHHHHHHHHhCCCCeEEEec
Q psy7344 203 AKRGHYGAYLQDDWPLLTELG 223 (240)
Q Consensus 203 ~~~~~~~~~l~~G~~~itih~ 223 (240)
.+.....+.++-|+++++|-+
T Consensus 190 ~tP~~Ak~a~~~Ga~aVvVGs 210 (229)
T COG3010 190 NTPEQAKKAIEIGADAVVVGS 210 (229)
T ss_pred CCHHHHHHHHHhCCeEEEECc
Confidence 777766666666999999944
No 329
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.88 E-value=21 Score=31.52 Aligned_cols=68 Identities=9% Similarity=-0.014 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhc
Q psy7344 125 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAK 204 (240)
Q Consensus 125 d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~ 204 (240)
+.++++++.+.++.|+|.|++-- -+|+.++++++.++... .++.+.+-..+
T Consensus 188 Ev~tleea~~A~~~GaDiI~LDn-----------------~~~e~l~~~v~~~~~~~----------~~~~ieAsGgI-- 238 (273)
T PRK05848 188 ECESLEEAKNAMNAGADIVMCDN-----------------MSVEEIKEVVAYRNANY----------PHVLLEASGNI-- 238 (273)
T ss_pred EeCCHHHHHHHHHcCCCEEEECC-----------------CCHHHHHHHHHHhhccC----------CCeEEEEECCC--
Confidence 44556667777778899998511 28999999998755431 12334444444
Q ss_pred HHHHHHHHhC-CCCeEEE
Q psy7344 205 RGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 205 ~~~~~~~l~~-G~~~iti 221 (240)
+.+-++.+.+ |+|.|++
T Consensus 239 t~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 239 TLENINAYAKSGVDAISS 256 (273)
T ss_pred CHHHHHHHHHcCCCEEEe
Confidence 3455555667 9999998
No 330
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=67.87 E-value=30 Score=30.18 Aligned_cols=74 Identities=8% Similarity=-0.020 Sum_probs=50.2
Q ss_pred HHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHH
Q psy7344 128 NLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRG 206 (240)
Q Consensus 128 ~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~ 206 (240)
+..+.|+..++ |+.+|-+..= ... ...+++.++.+.+. +++||-.|-=+-+..
T Consensus 62 d~~~~A~~y~~~GA~aISVlTe-------~~~----F~Gs~~~l~~v~~~---------------v~~PvL~KDFIid~~ 115 (247)
T PRK13957 62 HPVQIAKTYETLGASAISVLTD-------QSY----FGGSLEDLKSVSSE---------------LKIPVLRKDFILDEI 115 (247)
T ss_pred CHHHHHHHHHHCCCcEEEEEcC-------CCc----CCCCHHHHHHHHHh---------------cCCCEEeccccCCHH
Confidence 44566777765 6777754332 222 23477777666654 577999988877777
Q ss_pred HHHHHHhCCCCeEEEeccccc
Q psy7344 207 HYGAYLQDDWPLLTELGKMAM 227 (240)
Q Consensus 207 ~~~~~l~~G~~~itih~R~~~ 227 (240)
++.+....|||+|-++.+.-.
T Consensus 116 QI~ea~~~GADavLLI~~~L~ 136 (247)
T PRK13957 116 QIREARAFGASAILLIVRILT 136 (247)
T ss_pred HHHHHHHcCCCEEEeEHhhCC
Confidence 777776679999999888654
No 331
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=67.65 E-value=26 Score=30.33 Aligned_cols=79 Identities=9% Similarity=-0.180 Sum_probs=50.0
Q ss_pred HHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh------hc
Q psy7344 132 AAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV------AK 204 (240)
Q Consensus 132 aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~------~~ 204 (240)
.|+++++ |+|.|-++-+..+ ...|+-....-..+.+...++++..+. ...||++-+.. ++
T Consensus 24 sA~i~e~aG~dai~v~~s~~a---~~~G~pD~~~vtl~em~~~~~~I~r~~----------~~~pviaD~~~G~g~~~~~ 90 (240)
T cd06556 24 MAKQFADAGLNVMLVGDSQGM---TVAGYDDTLPYPVNDVPYHVRAVRRGA----------PLALIVADLPFGAYGAPTA 90 (240)
T ss_pred HHHHHHHcCCCEEEEChHHHH---HhcCCCCCCCcCHHHHHHHHHHHHhhC----------CCCCEEEeCCCCCCcCHHH
Confidence 3555655 7888888655322 222333323456777777777777762 23688888872 34
Q ss_pred HHHHHHHHhC-CCCeEEEec
Q psy7344 205 RGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 205 ~~~~~~~l~~-G~~~itih~ 223 (240)
..+.++.+.+ |+++|.|-+
T Consensus 91 ~~~~~~~l~~aGa~gv~iED 110 (240)
T cd06556 91 AFELAKTFMRAGAAGVKIEG 110 (240)
T ss_pred HHHHHHHHHHcCCcEEEEcC
Confidence 5667888888 999888844
No 332
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=67.35 E-value=46 Score=30.40 Aligned_cols=82 Identities=13% Similarity=-0.021 Sum_probs=56.0
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
..|++.-| .+++..++..++.++|.|-||-|= ..+++.++++++..++.- ..
T Consensus 72 ~iPlVADI----HFd~~lAl~a~~~g~dkiRINPGN--------------ig~~e~v~~vv~~ak~~~----------ip 123 (346)
T TIGR00612 72 NVPLVADI----HFDYRLAALAMAKGVAKVRINPGN--------------IGFRERVRDVVEKARDHG----------KA 123 (346)
T ss_pred CCCEEEee----CCCcHHHHHHHHhccCeEEECCCC--------------CCCHHHHHHHHHHHHHCC----------CC
Confidence 47887654 123556777788899999999991 245899999999988841 22
Q ss_pred eeeEEeee------------------hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 194 INIGCPQM------------------VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 194 ~pvsvK~r------------------~~~~~~~~~~l~~-G~~~itih~ 223 (240)
+.+-|+-- +++..++++.|++ |-+.|.+-.
T Consensus 124 IRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~ 172 (346)
T TIGR00612 124 MRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSM 172 (346)
T ss_pred EEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEE
Confidence 22222221 3456788999999 988877643
No 333
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=67.17 E-value=22 Score=31.73 Aligned_cols=79 Identities=11% Similarity=-0.132 Sum_probs=48.4
Q ss_pred HHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--h---hcHH
Q psy7344 133 AKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM--V---AKRG 206 (240)
Q Consensus 133 a~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r--~---~~~~ 206 (240)
|++++. |+++|-+.-..-.. ... |+--.-+-.++.+.+.++.+... +++||++-.. + .++.
T Consensus 30 Ari~e~~Gf~ai~~Sg~~~a~-~~l-G~PD~g~l~~~e~~~~~~~I~~~-----------~~iPviaD~d~GyG~~~~v~ 96 (292)
T PRK11320 30 ALLAERAGFKAIYLSGGGVAA-ASL-GLPDLGITTLDDVLIDVRRITDA-----------CDLPLLVDIDTGFGGAFNIA 96 (292)
T ss_pred HHHHHHcCCCEEEeCHHHHHh-Hhc-CCCCCCCCCHHHHHHHHHHHHhc-----------cCCCEEEECCCCCCCHHHHH
Confidence 355554 78888764431110 111 11110124566666666666666 7899999888 3 3456
Q ss_pred HHHHHHhC-CCCeEEEecc
Q psy7344 207 HYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 207 ~~~~~l~~-G~~~itih~R 224 (240)
...+.+++ |+.+|+|--.
T Consensus 97 r~V~~~~~aGaagi~IEDq 115 (292)
T PRK11320 97 RTVKSMIKAGAAAVHIEDQ 115 (292)
T ss_pred HHHHHHHHcCCeEEEEecC
Confidence 67888999 9999999543
No 334
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=67.14 E-value=21 Score=31.34 Aligned_cols=72 Identities=13% Similarity=0.072 Sum_probs=45.5
Q ss_pred HHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee-----h
Q psy7344 128 NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-----V 202 (240)
Q Consensus 128 ~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-----~ 202 (240)
...++...++.|+|.||+=.- +|.-...+++.+.+-++.+.+.. .-++.+|.- +
T Consensus 85 K~~Ea~~Ai~~GAdEiD~Vin----------ig~lk~g~~~~v~~ei~~v~~~~-----------~~~~~lKVIlEt~~L 143 (257)
T PRK05283 85 ALAETRAAIAYGADEVDVVFP----------YRALMAGNEQVGFELVKACKEAC-----------AANVLLKVIIETGEL 143 (257)
T ss_pred HHHHHHHHHHcCCCEEeeecc----------HHHHhCCcHHHHHHHHHHHHHHh-----------CCCceEEEEEecccc
Confidence 355666777889999996322 11223468999988888887762 112444444 2
Q ss_pred hc---HHHHHHHHhC-CCCeEE
Q psy7344 203 AK---RGHYGAYLQD-DWPLLT 220 (240)
Q Consensus 203 ~~---~~~~~~~l~~-G~~~it 220 (240)
++ ....++.+.+ |+|+|-
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVK 165 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIK 165 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEE
Confidence 22 3457777788 999984
No 335
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=67.06 E-value=20 Score=32.00 Aligned_cols=35 Identities=26% Similarity=0.222 Sum_probs=25.2
Q ss_pred CCceeEEeec------CCHHHHHHHHHHHcc--CCCEEEecCC
Q psy7344 114 MCGHSLMFCG------NDSKNLTEAAKLAEP--HCDGIDINIG 148 (240)
Q Consensus 114 ~~pvivqi~g------~d~~~~~~aa~~le~--~~d~Idin~g 148 (240)
..|+++++.- .+..++.++++.+.+ ..++|.+||+
T Consensus 181 ~~pv~is~~~~~~g~l~~G~~~~~~~~~l~~~~~~~~iGiNC~ 223 (304)
T PRK09485 181 GVPAWLSFTLRDGTHISDGTPLAEAAALLAASPQVVAVGVNCT 223 (304)
T ss_pred CCcEEEEEEeCCCCcCCCCCCHHHHHHHHhcCCCceEEEecCC
Confidence 4798888742 245567778777754 3789999997
No 336
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=67.00 E-value=27 Score=29.64 Aligned_cols=65 Identities=23% Similarity=0.284 Sum_probs=43.0
Q ss_pred eCChhhHHHhhhcccCCCCceeEEeecC-CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHH
Q psy7344 97 QDDWPLLTELGFKTRSHMCGHSLMFCGN-DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175 (240)
Q Consensus 97 ~~d~eli~~i~~~~~~~~~pvivqi~g~-d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~ 175 (240)
+.||+++.... ...|+ -|.|+ +++...++++... ..+||+|.|= ... - -.+|+++++++++
T Consensus 142 ~fDW~~l~~~~-----~~~~~--~LAGGL~p~NV~~ai~~~~--p~gvDvSSGV-----E~~-p---G~KD~~kv~~f~~ 203 (208)
T COG0135 142 TFDWNLLPKLR-----LSKPV--MLAGGLNPDNVAEAIALGP--PYGVDVSSGV-----ESS-P---GIKDPAKVKAFFE 203 (208)
T ss_pred EECHHHhcccc-----ccCCE--EEECCCCHHHHHHHHHhcC--CceEEecccc-----ccC-C---CCCCHHHHHHHHH
Confidence 45798887751 13464 34444 8887777766544 3689999881 111 0 2489999999999
Q ss_pred Hhhh
Q psy7344 176 SPNM 179 (240)
Q Consensus 176 ~~~~ 179 (240)
.++.
T Consensus 204 ~vk~ 207 (208)
T COG0135 204 AVKR 207 (208)
T ss_pred HHhc
Confidence 8764
No 337
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=66.42 E-value=26 Score=32.78 Aligned_cols=20 Identities=5% Similarity=-0.288 Sum_probs=13.1
Q ss_pred HHHHHHHHhC-CCCeEEEecc
Q psy7344 205 RGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 205 ~~~~~~~l~~-G~~~itih~R 224 (240)
..+..+.=.+ |+|++|||+=
T Consensus 142 ~~~~ie~qa~dGVDfmTiH~G 162 (423)
T TIGR00190 142 MFRAIEKQAKDGVDFMTIHAG 162 (423)
T ss_pred HHHHHHHHHHhCCCEEEEccc
Confidence 3333333345 9999999984
No 338
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=66.34 E-value=22 Score=30.23 Aligned_cols=94 Identities=14% Similarity=0.158 Sum_probs=56.5
Q ss_pred hhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh
Q psy7344 100 WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 100 ~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~ 179 (240)
.++|+++... .++-+|+.|+ +.+..++.+.++.|++-|=+| +....||+.+.++.+..-.
T Consensus 62 ~~~i~~i~~~-----~~~~i~vgGG-Irs~ed~~~ll~~Ga~~Vvig--------------t~~~~~~~~l~~~~~~~g~ 121 (229)
T PF00977_consen 62 LELIKEIAKE-----TGIPIQVGGG-IRSIEDAERLLDAGADRVVIG--------------TEALEDPELLEELAERYGS 121 (229)
T ss_dssp HHHHHHHHHH-----SSSEEEEESS-E-SHHHHHHHHHTT-SEEEES--------------HHHHHCCHHHHHHHHHHGG
T ss_pred HHHHHHHHhc-----CCccEEEeCc-cCcHHHHHHHHHhCCCEEEeC--------------hHHhhchhHHHHHHHHcCc
Confidence 4666666543 2344566544 556667777887777655443 3356899999999987654
Q ss_pred ccccccCCCCCCCCeeeEEeee-------h-----hcHHHHHHHHhC-CCCeEEEec
Q psy7344 180 VHFVIAEPHCDGNDINIGCPQM-------V-----AKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 180 ~~~~i~~~~~~~~~~pvsvK~r-------~-----~~~~~~~~~l~~-G~~~itih~ 223 (240)
.- .-+.+-+|.. + .+..++++.+++ |+..+.++.
T Consensus 122 ~~----------ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~td 168 (229)
T PF00977_consen 122 QR----------IVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIILTD 168 (229)
T ss_dssp GG----------EEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEE
T ss_pred cc----------EEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEEee
Confidence 10 1112222221 1 257899999999 999987743
No 339
>PLN02591 tryptophan synthase
Probab=66.19 E-value=31 Score=30.08 Aligned_cols=85 Identities=13% Similarity=0.059 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHcc-CCCEEEecCCCchhhh-----hcccccccc--cCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 124 NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVA-----KRGHYGAYL--QDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 124 ~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~-----~~~g~G~~l--~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
.|.+++.++++.+.+ |+|.|||++==..+.+ .+... .+| .-+.+.+-++++.+++. .++|
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~-rAL~~G~~~~~~~~~~~~~r~~-----------~~~p 80 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAAT-RALEKGTTLDSVISMLKEVAPQ-----------LSCP 80 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHH-HHHHcCCCHHHHHHHHHHHhcC-----------CCCC
Confidence 477888998887754 8999999753211221 11100 111 23455566666666654 4667
Q ss_pred eEEeee-hh-----cHHHHHHHHhC-CCCeEEE
Q psy7344 196 IGCPQM-VA-----KRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 196 vsvK~r-~~-----~~~~~~~~l~~-G~~~iti 221 (240)
+.. +. ++ -..+|.+.+.+ |+|++.+
T Consensus 81 ~il-m~Y~N~i~~~G~~~F~~~~~~aGv~Gvii 112 (250)
T PLN02591 81 IVL-FTYYNPILKRGIDKFMATIKEAGVHGLVV 112 (250)
T ss_pred EEE-EecccHHHHhHHHHHHHHHHHcCCCEEEe
Confidence 642 22 22 24568888888 9999877
No 340
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=66.08 E-value=46 Score=29.06 Aligned_cols=51 Identities=12% Similarity=0.035 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHh
Q psy7344 124 NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSP 177 (240)
Q Consensus 124 ~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~ 177 (240)
-+.++..+.++.|.+ |++.||++...... ....|.....+.+.++++.+..
T Consensus 17 f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~---~~~~~~~~~~~~~~~~~i~~~~ 68 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYVEIGYRSSPE---KEFKGKSAFCDDEFLRRLLGDS 68 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeecCCCCc---cccCCCccCCCHHHHHHHHhhh
Confidence 367788889999976 89999998764332 1223444556788888887754
No 341
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=65.94 E-value=15 Score=32.25 Aligned_cols=135 Identities=11% Similarity=0.047 Sum_probs=67.9
Q ss_pred CCcccCCCchhHHHHHHHhhcccCCCceeeccccc--ccCCCccccc--cCchhhhhhhhcccceeeeC-----ChhhHH
Q psy7344 34 YGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFI--AEPHCDGIDI--NIGCPQMVAKRGHYGAYLQD-----DWPLLT 104 (240)
Q Consensus 34 ~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~--lap~~~~~dl--~~gC~~~i~~~g~~ga~l~~-----d~eli~ 104 (240)
-||+.+.+.+| +.++. +.+.|+.+|.-.. +..+....+. ..|+++.+..+.++.++... |...+.
T Consensus 116 Iga~~~~n~~L----L~~~a--~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~ 189 (266)
T PRK13398 116 IGSRNMQNFEL----LKEVG--KTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVA 189 (266)
T ss_pred ECcccccCHHH----HHHHh--cCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHH
Confidence 56889999888 55555 4679998874322 1222222211 45554533233222222111 122222
Q ss_pred HhhhcccCCCCceeEEee--cCCHHHHHHHHHH-HccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 105 ELGFKTRSHMCGHSLMFC--GNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 105 ~i~~~~~~~~~pvivqi~--g~d~~~~~~aa~~-le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
.+.... ..|+++--. .++.+....++.. +..|++|++|....--..+.. -+. ..-+|+.++++++.++..
T Consensus 190 ~lk~~~---~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~pd~a~~--D~~-~sl~p~~l~~l~~~i~~~ 262 (266)
T PRK13398 190 VIKELS---HLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPEPEKALS--DAR-QTLNFEEMKELVDELKPM 262 (266)
T ss_pred HHHhcc---CCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCCccccCC--chh-hcCCHHHHHHHHHHHHHH
Confidence 222211 357665211 1222333333333 355899998887732222221 222 346899999999988764
No 342
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=65.87 E-value=66 Score=29.64 Aligned_cols=91 Identities=8% Similarity=-0.167 Sum_probs=58.9
Q ss_pred CCceeEEee---cCCHHHHHHHHHHHcc-CCCEEEec--CCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCC
Q psy7344 114 MCGHSLMFC---GNDSKNLTEAAKLAEP-HCDGIDIN--IGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEP 187 (240)
Q Consensus 114 ~~pvivqi~---g~d~~~~~~aa~~le~-~~d~Idin--~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~ 187 (240)
++|++..+. |-|++.+.+++..+.. |+|.|--. .+- ...+.-.|.++.+.++++++.
T Consensus 125 ~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~-----------~~~~p~~eRv~~v~~av~~a~------ 187 (364)
T cd08210 125 ERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKDDHGLAD-----------QPFAPFEERVKACQEAVAEAN------ 187 (364)
T ss_pred CCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeecCccccC-----------ccCCCHHHHHHHHHHHHHHHH------
Confidence 578766553 5689999888887755 67888322 331 112445566666666665541
Q ss_pred CCCCCCeeeEEeee--hhcHHHHHHHHhC-CCCeEEE
Q psy7344 188 HCDGNDINIGCPQM--VAKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 188 ~~~~~~~pvsvK~r--~~~~~~~~~~l~~-G~~~iti 221 (240)
.-+|.+.++.+.+. .++..+.++.+++ |++++.+
T Consensus 188 ~eTG~~~~y~~Nita~~~em~~ra~~a~~~Ga~~vMv 224 (364)
T cd08210 188 AETGGRTLYAPNVTGPPTQLLERARFAKEAGAGGVLI 224 (364)
T ss_pred hhcCCcceEEEecCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 11234678888887 4566777888889 9988776
No 343
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=65.79 E-value=47 Score=30.57 Aligned_cols=104 Identities=9% Similarity=-0.176 Sum_probs=56.3
Q ss_pred eCChhhHHHhhhcccCCCCceeEEeec-CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHH
Q psy7344 97 QDDWPLLTELGFKTRSHMCGHSLMFCG-NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174 (240)
Q Consensus 97 ~~d~eli~~i~~~~~~~~~pvivqi~g-~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv 174 (240)
..+.+++..+-. ...||+++-+- .+++++..+++.+.. |..-|-|--.|-... ...+.. ..|+..+..+.
T Consensus 212 ~~n~~LL~~~a~----~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~y---p~~~~~-~ldl~~i~~lk 283 (360)
T PRK12595 212 MQNFELLKAAGR----VNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTY---EKATRN-TLDISAVPILK 283 (360)
T ss_pred ccCHHHHHHHHc----cCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCC---CCCCCC-CcCHHHHHHHH
Confidence 334555555432 35799999764 699999999999865 554444432121110 000011 12565554444
Q ss_pred HHhhhccccccCCCCCCCCeeeEEeee--h---hcHHHHHHHHhC-CCCe--EEEec
Q psy7344 175 YSPNMVHFVIAEPHCDGNDINIGCPQM--V---AKRGHYGAYLQD-DWPL--LTELG 223 (240)
Q Consensus 175 ~~~~~~~~~i~~~~~~~~~~pvsvK~r--~---~~~~~~~~~l~~-G~~~--itih~ 223 (240)
+ . ..+||.+--. . +.....+.+... |||+ |-.|.
T Consensus 284 ~----~-----------~~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 284 Q----E-----------THLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred H----H-----------hCCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 4 2 3456665323 1 123346677778 9984 55666
No 344
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=65.73 E-value=43 Score=30.51 Aligned_cols=108 Identities=9% Similarity=-0.105 Sum_probs=56.5
Q ss_pred eCChhhHHHhhhcccCCCCceeEEeecC-CHHHHHHHHHHHcc-CCCE-EEecCCCchhhhhcccccccccCCHHHHHHH
Q psy7344 97 QDDWPLLTELGFKTRSHMCGHSLMFCGN-DSKNLTEAAKLAEP-HCDG-IDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 173 (240)
Q Consensus 97 ~~d~eli~~i~~~~~~~~~pvivqi~g~-d~~~~~~aa~~le~-~~d~-Idin~gCP~~~~~~~g~G~~l~~~p~~i~~i 173 (240)
..+.+++..+- ....|++++-+-. +++++..+++.+.. |-.- +=+.||-.. ...+. ..--|...+
T Consensus 187 ~~N~~LL~~va----~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~t----f~~~~-~~~ldl~ai--- 254 (335)
T PRK08673 187 MQNFDLLKEVG----KTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRT----FETAT-RNTLDLSAV--- 254 (335)
T ss_pred ccCHHHHHHHH----cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCC----CCCcC-hhhhhHHHH---
Confidence 34455555543 2357999987544 89999999999865 5433 334343100 00010 111233333
Q ss_pred HHHhhhccccccCCCCCCCCeeeEEeee-----hhcHHHHHHHHhC-CCC--eEEEecccccc
Q psy7344 174 VYSPNMVHFVIAEPHCDGNDINIGCPQM-----VAKRGHYGAYLQD-DWP--LLTELGKMAML 228 (240)
Q Consensus 174 v~~~~~~~~~i~~~~~~~~~~pvsvK~r-----~~~~~~~~~~l~~-G~~--~itih~R~~~~ 228 (240)
..+++. +..||.+--. .+-...++++... ||| .|-.|.--.+.
T Consensus 255 -~~lk~~-----------~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~a 305 (335)
T PRK08673 255 -PVIKKL-----------THLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKA 305 (335)
T ss_pred -HHHHHh-----------cCCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCCcccC
Confidence 333333 3456644333 1234567788888 999 55556544333
No 345
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=65.30 E-value=29 Score=30.17 Aligned_cols=69 Identities=13% Similarity=0.027 Sum_probs=43.7
Q ss_pred HHHHHHHHHHc-cCCCE---EEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh
Q psy7344 127 KNLTEAAKLAE-PHCDG---IDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV 202 (240)
Q Consensus 127 ~~~~~aa~~le-~~~d~---Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~ 202 (240)
-+..++|+..+ +|+|. +||-.+ + ...+...++++.+.+. ..+|++|=.-+
T Consensus 30 GDpVelA~~Y~e~GADElvFlDItAs-------~--------~gr~~~~~vv~r~A~~-----------vfiPltVGGGI 83 (256)
T COG0107 30 GDPVELAKRYNEEGADELVFLDITAS-------S--------EGRETMLDVVERVAEQ-----------VFIPLTVGGGI 83 (256)
T ss_pred CChHHHHHHHHHcCCCeEEEEecccc-------c--------ccchhHHHHHHHHHhh-----------ceeeeEecCCc
Confidence 34457777774 47775 445333 1 1223444666666665 67899988887
Q ss_pred hcHHHHHHHHhCCCCeEEE
Q psy7344 203 AKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 203 ~~~~~~~~~l~~G~~~iti 221 (240)
.+..++-+.|..|||-|+|
T Consensus 84 ~s~eD~~~ll~aGADKVSI 102 (256)
T COG0107 84 RSVEDARKLLRAGADKVSI 102 (256)
T ss_pred CCHHHHHHHHHcCCCeeee
Confidence 7777766666668888777
No 346
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=65.24 E-value=42 Score=30.83 Aligned_cols=77 Identities=9% Similarity=-0.006 Sum_probs=44.3
Q ss_pred CCceeEEeecC----CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCC
Q psy7344 114 MCGHSLMFCGN----DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPH 188 (240)
Q Consensus 114 ~~pvivqi~g~----d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~ 188 (240)
+-|+.+|=+.+ |.+...+-++.|++ ||+.|-+ .+|.. +.+ +.+..+++.
T Consensus 25 ~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRv--av~~~---------------~~a-~al~~I~~~-------- 78 (360)
T PRK00366 25 DAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRV--AVPDM---------------EAA-AALPEIKKQ-------- 78 (360)
T ss_pred CCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEE--ccCCH---------------HHH-HhHHHHHHc--------
Confidence 36899987654 66666666666655 7777765 33332 222 233334444
Q ss_pred CCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEE
Q psy7344 189 CDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 189 ~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~iti 221 (240)
+++|+.+-+-++- .+|-...+ |+|.|-|
T Consensus 79 ---~~iPlvADIHFd~--~lAl~a~~~G~~~iRI 107 (360)
T PRK00366 79 ---LPVPLVADIHFDY--RLALAAAEAGADALRI 107 (360)
T ss_pred ---CCCCEEEecCCCH--HHHHHHHHhCCCEEEE
Confidence 5778888666533 33333444 8888755
No 347
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=64.73 E-value=17 Score=31.45 Aligned_cols=78 Identities=13% Similarity=-0.089 Sum_probs=46.1
Q ss_pred HHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--hh----cH
Q psy7344 133 AKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM--VA----KR 205 (240)
Q Consensus 133 a~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r--~~----~~ 205 (240)
+++++. |+++|-+.-.+-+. .. |+--.-+-.++.+.+.++.+... +++||++-.. +. ++
T Consensus 22 Ar~~e~~Gf~ai~~sg~~~a~--s~-G~pD~~~lt~~e~~~~~~~I~~~-----------~~iPv~vD~d~GyG~~~~~v 87 (238)
T PF13714_consen 22 ARLAERAGFDAIATSGAGVAA--SL-GYPDGGLLTLTEMLAAVRRIARA-----------VSIPVIVDADTGYGNDPENV 87 (238)
T ss_dssp HHHHHHTT-SEEEEHHHHHHH--HT-TS-SSS-S-HHHHHHHHHHHHHH-----------SSSEEEEE-TTTSSSSHHHH
T ss_pred HHHHHHcCCCEEEechHHHHH--Hc-CCCCCCCCCHHHHHHHHHHHHhh-----------hcCcEEEEcccccCchhHHH
Confidence 455555 78888775442221 11 21111123566666777777777 7899999998 33 45
Q ss_pred HHHHHHHhC-CCCeEEEecc
Q psy7344 206 GHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 206 ~~~~~~l~~-G~~~itih~R 224 (240)
.+.++.+++ |+.+|.|--.
T Consensus 88 ~~tv~~~~~aG~agi~IEDq 107 (238)
T PF13714_consen 88 ARTVRELERAGAAGINIEDQ 107 (238)
T ss_dssp HHHHHHHHHCT-SEEEEESB
T ss_pred HHHHHHHHHcCCcEEEeecc
Confidence 677888889 9999999544
No 348
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=64.49 E-value=28 Score=29.28 Aligned_cols=65 Identities=22% Similarity=0.320 Sum_probs=43.2
Q ss_pred eeCChhhHHHhhhcccCCCCceeEEeecC-CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHH
Q psy7344 96 LQDDWPLLTELGFKTRSHMCGHSLMFCGN-DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLV 174 (240)
Q Consensus 96 l~~d~eli~~i~~~~~~~~~pvivqi~g~-d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv 174 (240)
.+.||++++.+ . ..|++ |.|+ +|+...++.. +.....+||++.|= ... | .+|++++++++
T Consensus 140 ~~~dw~~~~~~-~-----~~p~i--LAGGL~peNV~~a~~-~~~~p~gVDvsSGV-----E~~--G---~KD~~ki~~f~ 200 (207)
T PRK13958 140 QTYDWTILKHI-K-----DIPYL--IAGGINSENIQTVEQ-LKLSHQGYDIASGI-----ETN--G---RKDINKMTAIV 200 (207)
T ss_pred cEeChHHhhhc-c-----CCCEE--EECCCCHHHHHHHHh-cCCCCCEEEccccc-----CCC--C---CCCHHHHHHHH
Confidence 34579888754 1 24654 4554 8887776433 22356899999882 111 2 48999999999
Q ss_pred HHhhh
Q psy7344 175 YSPNM 179 (240)
Q Consensus 175 ~~~~~ 179 (240)
++++.
T Consensus 201 ~~v~~ 205 (207)
T PRK13958 201 NIVKG 205 (207)
T ss_pred HHHHh
Confidence 98875
No 349
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=64.09 E-value=12 Score=33.20 Aligned_cols=132 Identities=18% Similarity=0.102 Sum_probs=71.2
Q ss_pred CCcccCCCchhHHHHHHHhhcccCCCceeecccccccC--CCcccc--ccCchhh-hhhhhcccceee----eCChhhHH
Q psy7344 34 YGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFIAEP--HCDGID--INIGCPQ-MVAKRGHYGAYL----QDDWPLLT 104 (240)
Q Consensus 34 ~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~lap--~~~~~d--l~~gC~~-~i~~~g~~ga~l----~~d~eli~ 104 (240)
.|+++|++.+| +.++. ..+.||.+|--.+.+| |....+ ...|-++ .++.+|- .|. +.|..-+.
T Consensus 112 IgAr~~rqtdL----L~a~~--~tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~~viLcERG~--tFgy~~lv~D~r~ip 183 (290)
T PLN03033 112 IPAFLCRQTDL----LVAAA--KTGKIINIKKGQFCAPSVMRNSAEKVRLAGNPNVMVCERGT--MFGYNDLIVDPRNLE 183 (290)
T ss_pred eCcHHHHHHHH----HHHHH--ccCCeEEeCCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCC--CcCCCCcccchhhhH
Confidence 46999999888 44555 4678999986555544 222222 1334333 3454442 221 12222222
Q ss_pred HhhhcccCCCCceeE------Eee------------cCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccC
Q psy7344 105 ELGFKTRSHMCGHSL------MFC------------GNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQD 165 (240)
Q Consensus 105 ~i~~~~~~~~~pviv------qi~------------g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~ 165 (240)
.++.. ..|||+ |+- +++-+....+++.. .-|+||+.+-.. |.+... ..-|.+ +-
T Consensus 184 ~mk~~----~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlfiEvH-pdP~~A-lsDg~q-~l 256 (290)
T PLN03033 184 WMREA----NCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIFMEVH-DDPLSA-PVDGPT-QW 256 (290)
T ss_pred HHHhc----CCCEEEeCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEec-CCcccc-CCCccc-Cc
Confidence 22221 235443 331 24455555566665 448999999888 454211 122332 35
Q ss_pred CHHHHHHHHHHhhhc
Q psy7344 166 DWPLLTNLVYSPNMV 180 (240)
Q Consensus 166 ~p~~i~~iv~~~~~~ 180 (240)
+++.++++++.+++.
T Consensus 257 ~~~~l~~ll~~l~~i 271 (290)
T PLN03033 257 PLRHLEELLEELIAI 271 (290)
T ss_pred CHHHHHHHHHHHHHH
Confidence 788888888887764
No 350
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=63.94 E-value=35 Score=29.11 Aligned_cols=82 Identities=10% Similarity=-0.068 Sum_probs=48.2
Q ss_pred ceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 116 GHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 116 pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++++=|-..|.++..+.++.+...++.+.+|.-. - ... =++.++++. +.. .+.+
T Consensus 5 ~livALD~~~~~~A~~l~~~l~~~v~~iKVG~~L--~--~~~--------G~~~i~~lk----~~~----------~~~~ 58 (218)
T PRK13305 5 LLQLALDHTSLEAAQRDVTLLKDHVDIVEAGTIL--C--LNE--------GLGAVKALR----EQC----------PDKI 58 (218)
T ss_pred CEEEEeCCCCHHHHHHHHHHccccCCEEEECHHH--H--HHh--------CHHHHHHHH----HhC----------CCCE
Confidence 4555554567777777888887777888886551 1 111 133444444 431 2345
Q ss_pred eEEeee---hhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 196 IGCPQM---VAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 196 vsvK~r---~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
|.+-+. +.+| .++.+.+ |+|.+|+|+..
T Consensus 59 IflDlKl~DIp~t--v~~~~~~~Gad~~tv~~~~ 90 (218)
T PRK13305 59 IVADWKVADAGET--LAQQAFGAGANWMTIICAA 90 (218)
T ss_pred EEEEeecccChHH--HHHHHHHcCCCEEEEecCC
Confidence 665555 3344 3445668 99999999763
No 351
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=62.94 E-value=31 Score=36.91 Aligned_cols=80 Identities=14% Similarity=0.037 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHH-HccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee-
Q psy7344 124 NDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM- 201 (240)
Q Consensus 124 ~d~~~~~~aa~~-le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r- 201 (240)
+|.+...+.|+. +++|++.||||.|-+ .....+.+.+++..+... +.+ +++|+++-..
T Consensus 381 ~d~~~al~~A~~qve~GA~iIDVn~g~~------------~id~~eem~rvv~~i~~~-~~~-------~~vPlsIDS~~ 440 (1229)
T PRK09490 381 EDYDEALDVARQQVENGAQIIDINMDEG------------MLDSEAAMVRFLNLIASE-PDI-------ARVPIMIDSSK 440 (1229)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC------------CCCHHHHHHHHHHHHHhh-hcc-------CCceEEEeCCc
Confidence 356666665554 467999999997722 234556666777766542 000 4677777666
Q ss_pred ---h----------------------hcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 ---V----------------------AKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 ---~----------------------~~~~~~~~~l~~-G~~~itih~ 223 (240)
+ +...+.++.+.+ |+..|.+|-
T Consensus 441 ~~ViEaaLk~~~G~~IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~ 488 (1229)
T PRK09490 441 WEVIEAGLKCIQGKGIVNSISLKEGEEKFIEHARLVRRYGAAVVVMAF 488 (1229)
T ss_pred HHHHHHHHhhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEec
Confidence 0 123357777888 999999985
No 352
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=62.82 E-value=42 Score=28.78 Aligned_cols=74 Identities=8% Similarity=-0.051 Sum_probs=44.7
Q ss_pred HHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEE------eee--
Q psy7344 131 EAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGC------PQM-- 201 (240)
Q Consensus 131 ~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsv------K~r-- 201 (240)
+..+.+ +.|++.|+++.+.|...... -.+++.+.++.+.+++. .+++++ .+.
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~------------gl~ls~h~p~~~nl~s~ 74 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGV-------RLSEETAEKFKEALKEN------------NIDVSVHAPYLINLASP 74 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCC-------CCCHHHHHHHHHHHHHc------------CCCEEEECCceecCCCC
Confidence 444444 45899999999988653211 13566676777666552 223332 111
Q ss_pred --------hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 --------VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 --------~~~~~~~~~~l~~-G~~~itih~ 223 (240)
++.+.+.++.+.. |++.|++|.
T Consensus 75 d~~~r~~~~~~l~~~i~~A~~lGa~~vv~h~ 105 (273)
T smart00518 75 DKEKVEKSIERLIDEIKRCEELGIKALVFHP 105 (273)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 1234456666778 999999986
No 353
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=62.73 E-value=16 Score=33.63 Aligned_cols=135 Identities=16% Similarity=0.069 Sum_probs=71.1
Q ss_pred CCcccCCCchhHHHHHHHhhcccCCCceeeccccc--ccCCCccccc--cCchhhhhhhhcccceee-----eCChhhHH
Q psy7344 34 YGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFI--AEPHCDGIDI--NIGCPQMVAKRGHYGAYL-----QDDWPLLT 104 (240)
Q Consensus 34 ~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~--lap~~~~~dl--~~gC~~~i~~~g~~ga~l-----~~d~eli~ 104 (240)
-||+++.+.+| +.++. ..+.|+.++.-.. +..+...++. ..|+++.+..|.++..|- ..|+..+.
T Consensus 207 I~s~~~~n~~L----L~~~a--~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~ 280 (360)
T PRK12595 207 IGARNMQNFEL----LKAAG--RVNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVP 280 (360)
T ss_pred ECcccccCHHH----HHHHH--ccCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHH
Confidence 46779999888 55666 4678998874332 2222222222 456544443332222221 22444455
Q ss_pred HhhhcccCCCCceeEEee--cCCHHHHHHHHHH-HccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 105 ELGFKTRSHMCGHSLMFC--GNDSKNLTEAAKL-AEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 105 ~i~~~~~~~~~pvivqi~--g~d~~~~~~aa~~-le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
.+.... ..|+++.-. +++.+....+++. +..|+||+.|...+ .+. ..+.-+. ..-+|+.++++++.++..
T Consensus 281 ~lk~~~---~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~-dp~-~a~~D~~-~sl~p~el~~l~~~i~~~ 353 (360)
T PRK12595 281 ILKQET---HLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP-DPA-VALSDSA-QQMDIPEFDRFLDELKPL 353 (360)
T ss_pred HHHHHh---CCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC-CCC-CCCCchh-hhCCHHHHHHHHHHHHHH
Confidence 544322 357766321 1222222233433 34589988887774 332 1222222 356899999999988774
No 354
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=62.67 E-value=19 Score=27.82 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=17.8
Q ss_pred HHHHHHHccCCCEEEecCCCchhh
Q psy7344 130 TEAAKLAEPHCDGIDINIGCPQMV 153 (240)
Q Consensus 130 ~~aa~~le~~~d~Idin~gCP~~~ 153 (240)
.-..+.++.|+|||-+ .|||...
T Consensus 43 ~~il~Af~~GADGV~V-~gC~~g~ 65 (124)
T PF02662_consen 43 EFILRAFEKGADGVLV-AGCHPGD 65 (124)
T ss_pred HHHHHHHHcCCCEEEE-eCCCCCC
Confidence 3456778889999999 7887654
No 355
>PLN02411 12-oxophytodienoate reductase
Probab=62.58 E-value=61 Score=30.05 Aligned_cols=32 Identities=16% Similarity=0.118 Sum_probs=22.5
Q ss_pred CCeeeEEeeehhcHHHHHHHHhCC-CCeEEEeccc
Q psy7344 192 NDINIGCPQMVAKRGHYGAYLQDD-WPLLTELGKM 225 (240)
Q Consensus 192 ~~~pvsvK~r~~~~~~~~~~l~~G-~~~itih~R~ 225 (240)
+++||.+-.++. ..+..+.+++| +|.|.+ ||.
T Consensus 312 v~~pvi~~G~i~-~~~a~~~l~~g~aDlV~~-gR~ 344 (391)
T PLN02411 312 YQGTFMCSGGFT-RELGMQAVQQGDADLVSY-GRL 344 (391)
T ss_pred cCCCEEEECCCC-HHHHHHHHHcCCCCEEEE-CHH
Confidence 567898888873 44444555555 899988 875
No 356
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=62.50 E-value=41 Score=29.03 Aligned_cols=83 Identities=11% Similarity=-0.065 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc--cccccCCCCCCCCeeeEEee---
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV--HFVIAEPHCDGNDINIGCPQ--- 200 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~--~~~i~~~~~~~~~~pvsvK~--- 200 (240)
.++.++.+.+.+ |+|+|+++++++.... . ...+++.++++.+.+.+. +.+... .|.....
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~i~~~-------~~~~~~~~~~ 75 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWL------S-RPLKKERAEKFKAIAEEGPSICLSVH-------APYLINLASP 75 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccC------C-CCCCHHHHHHHHHHHHHcCCCcEEEE-------cCceeccCCC
Confidence 455666666654 8999999998764321 1 112567888888887764 111100 0111111
Q ss_pred ----e---hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 201 ----M---VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 201 ----r---~~~~~~~~~~l~~-G~~~itih~ 223 (240)
| ++.....++.+.. |++.+.+|.
T Consensus 76 ~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~ 106 (279)
T cd00019 76 DKEKREKSIERLKDEIERCEELGIRLLVFHP 106 (279)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 1 2334566777788 999999875
No 357
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=61.93 E-value=69 Score=26.49 Aligned_cols=75 Identities=15% Similarity=0.030 Sum_probs=52.3
Q ss_pred ceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCe
Q psy7344 116 GHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDI 194 (240)
Q Consensus 116 pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~ 194 (240)
+.+--++--|...+.+..+.++. .+|.|++--|| -|..++++.+. +.+
T Consensus 97 ~aIqR~FilDS~Al~~~~~~i~~~~pD~iEvLPGv----------------~Pkvi~~i~~~---------------t~~ 145 (181)
T COG1954 97 LAIQRLFILDSIALEKGIKQIEKSEPDFIEVLPGV----------------MPKVIKEITEK---------------THI 145 (181)
T ss_pred ceeeeeeeecHHHHHHHHHHHHHcCCCEEEEcCcc----------------cHHHHHHHHHh---------------cCC
Confidence 33333445688888888888875 79999998884 45566666654 567
Q ss_pred eeEEeeehhcHHHHHHHHhCCCCeEEE
Q psy7344 195 NIGCPQMVAKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 195 pvsvK~r~~~~~~~~~~l~~G~~~iti 221 (240)
|+.+=.-+.+.++.-.++..||.++|=
T Consensus 146 piIAGGLi~t~Eev~~Al~aGA~avST 172 (181)
T COG1954 146 PIIAGGLIETEEEVREALKAGAVAVST 172 (181)
T ss_pred CEEeccccccHHHHHHHHHhCcEEEee
Confidence 777666566666666666669999883
No 358
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=61.61 E-value=32 Score=30.64 Aligned_cols=78 Identities=12% Similarity=-0.149 Sum_probs=48.1
Q ss_pred HHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--hh---cHH
Q psy7344 133 AKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM--VA---KRG 206 (240)
Q Consensus 133 a~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r--~~---~~~ 206 (240)
|+++++ |+++|-+.-.+ .+..-|+--.-+-.++.+.+.++.+... +++||++-+. +. +..
T Consensus 28 Ari~e~aGf~ai~~ss~~---va~slG~pD~g~l~~~e~~~~~~~I~~~-----------~~lPv~aD~d~GyG~~~~v~ 93 (290)
T TIGR02321 28 AKLAEQAGFGGIWGSGFE---LSASYAVPDANILSMSTHLEMMRAIAST-----------VSIPLIADIDTGFGNAVNVH 93 (290)
T ss_pred HHHHHHcCCCEEEECHHH---HHHHCCCCCcccCCHHHHHHHHHHHHhc-----------cCCCEEEECCCCCCCcHHHH
Confidence 455554 78888775432 1111121110023566666666666666 7899999988 32 455
Q ss_pred HHHHHHhC-CCCeEEEecc
Q psy7344 207 HYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 207 ~~~~~l~~-G~~~itih~R 224 (240)
..++.+++ |+.+|.|--.
T Consensus 94 ~tV~~~~~aGvagi~IEDq 112 (290)
T TIGR02321 94 YVVPQYEAAGASAIVMEDK 112 (290)
T ss_pred HHHHHHHHcCCeEEEEeCC
Confidence 66888899 9999999543
No 359
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=61.53 E-value=17 Score=33.33 Aligned_cols=97 Identities=8% Similarity=0.042 Sum_probs=60.6
Q ss_pred CceeEEeec-CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhc----ccc-----------------------------
Q psy7344 115 CGHSLMFCG-NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKR----GHY----------------------------- 159 (240)
Q Consensus 115 ~pvivqi~g-~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~----~g~----------------------------- 159 (240)
.|...||.- .|.+...+..++.++ |++++-+..=.|...... .++
T Consensus 110 ~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~ 189 (356)
T PF01070_consen 110 GPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNE 189 (356)
T ss_dssp SEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----
T ss_pred CCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccc
Confidence 578888854 588888888888876 788877665444422111 111
Q ss_pred ---------------cccc--cCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEE
Q psy7344 160 ---------------GAYL--QDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 160 ---------------G~~l--~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~iti 221 (240)
+..+ --+|+.++.+++ . .++||.+|.-+ ..+-++.+.+ |+++|.|
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~----~-----------~~~pvivKgv~--~~~da~~~~~~G~~~i~v 252 (356)
T PF01070_consen 190 APPPGDNGAAAARFVGSQFDPSLTWDDIEWIRK----Q-----------WKLPVIVKGVL--SPEDAKRAVDAGVDGIDV 252 (356)
T ss_dssp CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHH----H-----------CSSEEEEEEE---SHHHHHHHHHTT-SEEEE
T ss_pred cccCCCcchhHHHHHHHhcCCCCCHHHHHHHhc----c-----------cCCceEEEecc--cHHHHHHHHhcCCCEEEe
Confidence 0000 134666555555 3 78899999983 2355667777 9999999
Q ss_pred ecccccc
Q psy7344 222 LGKMAML 228 (240)
Q Consensus 222 h~R~~~~ 228 (240)
-+.-..|
T Consensus 253 s~hGGr~ 259 (356)
T PF01070_consen 253 SNHGGRQ 259 (356)
T ss_dssp ESGTGTS
T ss_pred cCCCccc
Confidence 7776665
No 360
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=61.31 E-value=40 Score=27.88 Aligned_cols=80 Identities=10% Similarity=0.035 Sum_probs=47.4
Q ss_pred EeecC-CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEE
Q psy7344 120 MFCGN-DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGC 198 (240)
Q Consensus 120 qi~g~-d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsv 198 (240)
+|+|- ++++.. ..++.|+|.|-+-+--+.+ . --+++.++++.+.+...+ ..++|++
T Consensus 2 KiCGi~~~ed~~---~a~~~Gvd~ig~i~~~~s~--------R--~v~~~~a~~l~~~~~~~~----------~~V~v~v 58 (203)
T cd00405 2 KICGITTLEDAL---AAAEAGADAIGFIFAPKSP--------R--YVSPEQAREIVAALPPFV----------KRVGVFV 58 (203)
T ss_pred EECCCCCHHHHH---HHHHcCCCEEEEecCCCCC--------C--CCCHHHHHHHHHhCCCCC----------cEEEEEe
Confidence 56553 444333 3344577777664331111 1 136888888888766531 3467777
Q ss_pred eeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 199 PQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 199 K~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+.+++ +..+.+.+ |+|.|.+|+-.
T Consensus 59 n~~~~---~i~~ia~~~~~d~Vqlhg~e 83 (203)
T cd00405 59 NEDLE---EILEIAEELGLDVVQLHGDE 83 (203)
T ss_pred CCCHH---HHHHHHHhcCCCEEEECCCC
Confidence 65543 45555667 99999999864
No 361
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=61.18 E-value=24 Score=29.85 Aligned_cols=40 Identities=20% Similarity=0.067 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 127 KNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 127 ~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
+++.+.++.+.+ |.|+|+++-+ ...+.+.+.++++++++.
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS--------------~gvt~~~~~~~v~~ik~~ 51 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGS--------------LGIVESNLDQTVKKIKKI 51 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCc--------------CCCCHHHHHHHHHHHHhh
Confidence 345556666655 7999999533 224888999999999984
No 362
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=60.92 E-value=33 Score=30.05 Aligned_cols=94 Identities=18% Similarity=0.021 Sum_probs=56.9
Q ss_pred eeEEeecC--CHHHHHHHHHHHcc-CCCEEEecCCCchhhh-----hcccccccc--cCCHHHHHHHHHHhh-hcccccc
Q psy7344 117 HSLMFCGN--DSKNLTEAAKLAEP-HCDGIDINIGCPQMVA-----KRGHYGAYL--QDDWPLLTNLVYSPN-MVHFVIA 185 (240)
Q Consensus 117 vivqi~g~--d~~~~~~aa~~le~-~~d~Idin~gCP~~~~-----~~~g~G~~l--~~~p~~i~~iv~~~~-~~~~~i~ 185 (240)
++.=|..+ |.+.+.++++.+.+ |+|.|||++==..+.+ .+... .+| .-+.+.+-++++.++ +.
T Consensus 12 li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~-rAL~~G~~~~~~~~~~~~ir~~~----- 85 (259)
T PF00290_consen 12 LIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQ-RALKNGFTLEKIFELVKEIRKKE----- 85 (259)
T ss_dssp EEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHH-HHHHTT--HHHHHHHHHHHHHHC-----
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHH-HHHHCCCCHHHHHHHHHHHhccC-----
Confidence 44444444 66889999999876 8999999753222222 11100 001 246667777788877 44
Q ss_pred CCCCCCCCeeeEEeeehhc-----HHHHHHHHhC-CCCeEEEe
Q psy7344 186 EPHCDGNDINIGCPQMVAK-----RGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 186 ~~~~~~~~~pvsvK~r~~~-----~~~~~~~l~~-G~~~itih 222 (240)
.++|+.+=.=++. ..+|++.+.+ |+|++.+.
T Consensus 86 ------~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIip 122 (259)
T PF00290_consen 86 ------PDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIP 122 (259)
T ss_dssp ------TSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEET
T ss_pred ------CCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEc
Confidence 6778776433332 4568888999 99999873
No 363
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=60.84 E-value=34 Score=32.00 Aligned_cols=10 Identities=10% Similarity=-0.117 Sum_probs=6.3
Q ss_pred CCCeEEEecc
Q psy7344 215 DWPLLTELGK 224 (240)
Q Consensus 215 G~~~itih~R 224 (240)
|+|++|||+=
T Consensus 152 GVDfmtiH~g 161 (420)
T PF01964_consen 152 GVDFMTIHCG 161 (420)
T ss_dssp T--EEEE-TT
T ss_pred CCCEEEEccc
Confidence 9999999984
No 364
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=60.48 E-value=69 Score=27.89 Aligned_cols=85 Identities=12% Similarity=-0.041 Sum_probs=48.4
Q ss_pred CCCceeEEe-------e-cCCHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhcccc
Q psy7344 113 HMCGHSLMF-------C-GNDSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFV 183 (240)
Q Consensus 113 ~~~pvivqi-------~-g~d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~ 183 (240)
...|+++.. . ..+++....+++... .|+|.|-.+.. .+++.++++++.
T Consensus 138 ~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~----------------~~~~~l~~~~~~------- 194 (267)
T PRK07226 138 WGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYT----------------GDPESFREVVEG------- 194 (267)
T ss_pred cCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCC----------------CCHHHHHHHHHh-------
Confidence 356877652 1 124555566666664 48999955421 256777777653
Q ss_pred ccCCCCCCCCeeeEEeeehh--c---HHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 184 IAEPHCDGNDINIGCPQMVA--K---RGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 184 i~~~~~~~~~~pvsvK~r~~--~---~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
..+||.+=.-+. + ..++.+.+.+ |++++++ +|.-.|.
T Consensus 195 --------~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~-gr~i~~~ 237 (267)
T PRK07226 195 --------CPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAV-GRNVFQH 237 (267)
T ss_pred --------CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEeh-hhhhhcC
Confidence 234543222232 3 3444444567 9998876 8876654
No 365
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=60.08 E-value=62 Score=28.27 Aligned_cols=76 Identities=17% Similarity=0.099 Sum_probs=47.1
Q ss_pred eecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEee
Q psy7344 121 FCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQ 200 (240)
Q Consensus 121 i~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~ 200 (240)
++..+.++ +....+.|+|-|+|+.. . .-+| +-+.+..++.+++. .++||-+=+
T Consensus 6 vcv~s~~~---a~~A~~~GAdRiELc~~---L--~~GG----lTPS~g~i~~~~~~---------------~~ipv~vMI 58 (248)
T PRK11572 6 ICCYSMEC---ALTAQQAGADRIELCAA---P--KEGG----LTPSLGVLKSVRER---------------VTIPVHPII 58 (248)
T ss_pred EEECCHHH---HHHHHHcCCCEEEEccC---c--CCCC----cCCCHHHHHHHHHh---------------cCCCeEEEE
Confidence 34455553 44444568999999544 1 1132 55777777777654 567888888
Q ss_pred e-------h-----hcHHHHHHHHhC-CCCeEEEec
Q psy7344 201 M-------V-----AKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 201 r-------~-----~~~~~~~~~l~~-G~~~itih~ 223 (240)
| + +...+-++.+.+ |+|++.+-.
T Consensus 59 RPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~ 94 (248)
T PRK11572 59 RPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGV 94 (248)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEee
Confidence 8 1 122344556677 999998843
No 366
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=59.90 E-value=98 Score=27.22 Aligned_cols=90 Identities=10% Similarity=-0.032 Sum_probs=47.0
Q ss_pred ceeEEee-c---CCHHH-HHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCC
Q psy7344 116 GHSLMFC-G---NDSKN-LTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHC 189 (240)
Q Consensus 116 pvivqi~-g---~d~~~-~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~ 189 (240)
++++-+- + .++++ ...+.+.++ .|+++|.|--| .+.+..|...+..++||++-=.+
T Consensus 78 ~vvaD~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEdg------------------~~~~~~I~al~~agIpV~gHiGL 139 (264)
T PRK00311 78 LVVADMPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGG------------------EEVAETIKRLVERGIPVMGHLGL 139 (264)
T ss_pred cEEEeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEEcCc------------------HHHHHHHHHHHHCCCCEeeeecc
Confidence 4666552 3 25565 445677777 48899988544 12222233333346555410000
Q ss_pred CCCCe----eeEEeee----hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 190 DGNDI----NIGCPQM----VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 190 ~~~~~----pvsvK~r----~~~~~~~~~~l~~-G~~~itih~ 223 (240)
+-... -..+.-| .+.+++-++.+++ ||+.|.+-+
T Consensus 140 ~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~ 182 (264)
T PRK00311 140 TPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLEC 182 (264)
T ss_pred cceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 00000 0112223 3456788889999 999998854
No 367
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=59.72 E-value=26 Score=29.40 Aligned_cols=71 Identities=11% Similarity=0.002 Sum_probs=42.5
Q ss_pred HHHHHHccCCCEEEecCCCchhhhhcccccccccCCH--HHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHH
Q psy7344 131 EAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDW--PLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHY 208 (240)
Q Consensus 131 ~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p--~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~ 208 (240)
++-...+.|+|.|-++... ..+| +.+.++++.+++. .++|+.+... +.+.
T Consensus 84 ~~~~a~~aGad~I~~~~~~--------------~~~p~~~~~~~~i~~~~~~-----------g~~~iiv~v~---t~~e 135 (219)
T cd04729 84 EVDALAAAGADIIALDATD--------------RPRPDGETLAELIKRIHEE-----------YNCLLMADIS---TLEE 135 (219)
T ss_pred HHHHHHHcCCCEEEEeCCC--------------CCCCCCcCHHHHHHHHHHH-----------hCCeEEEECC---CHHH
Confidence 3334445688888776542 1123 2566777776665 3467776543 2234
Q ss_pred HHHHhC-CCCeEEE--eccccccc
Q psy7344 209 GAYLQD-DWPLLTE--LGKMAMLV 229 (240)
Q Consensus 209 ~~~l~~-G~~~iti--h~R~~~~~ 229 (240)
+..+.+ |+|.+.+ ||+|..+.
T Consensus 136 a~~a~~~G~d~i~~~~~g~t~~~~ 159 (219)
T cd04729 136 ALNAAKLGFDIIGTTLSGYTEETA 159 (219)
T ss_pred HHHHHHcCCCEEEccCcccccccc
Confidence 567777 9999954 67776543
No 368
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=59.71 E-value=23 Score=31.46 Aligned_cols=112 Identities=13% Similarity=0.123 Sum_probs=55.6
Q ss_pred hcccc--eeeeCChhhHHHhhhcccCCCCceeEEeecCC-----HHHHHHHHHHHccCCCEEEecCCCchhhhhcccccc
Q psy7344 89 RGHYG--AYLQDDWPLLTELGFKTRSHMCGHSLMFCGND-----SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGA 161 (240)
Q Consensus 89 ~g~~g--a~l~~d~eli~~i~~~~~~~~~pvivqi~g~d-----~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~ 161 (240)
.++|+ +|-..+.+.+..++.+......|+|+|+.-+. .+.+...++.+.+. .+.|...-..++
T Consensus 14 ~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~-------~~vPValHLDH~--- 83 (287)
T PF01116_consen 14 EGGYAVPAFNVYNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEE-------ASVPVALHLDHG--- 83 (287)
T ss_dssp HHT-BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHH-------STSEEEEEEEEE---
T ss_pred HCCCeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHH-------cCCCEEeecccC---
Confidence 34444 46677889998887766555689999986532 33344444444332 234443222221
Q ss_pred cccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee-----hhcHHHHHHHHhC-CCCeEEEecccc
Q psy7344 162 YLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-----VAKRGHYGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 162 ~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-----~~~~~~~~~~l~~-G~~~itih~R~~ 226 (240)
.+.+.+.+.++ .+. +.+.+-.-.. +..|.++.+.+.. |++-=.--|+..
T Consensus 84 ---~~~e~i~~ai~---~Gf----------tSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~ 138 (287)
T PF01116_consen 84 ---KDFEDIKRAID---AGF----------TSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGHIG 138 (287)
T ss_dssp ----SHHHHHHHHH---HTS----------SEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSS
T ss_pred ---CCHHHHHHHHH---hCc----------ccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeee
Confidence 35665555444 442 2222222111 3346677777777 765544445554
No 369
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=59.70 E-value=39 Score=36.05 Aligned_cols=80 Identities=11% Similarity=0.061 Sum_probs=50.7
Q ss_pred CCHHHHHHHHH-HHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee-
Q psy7344 124 NDSKNLTEAAK-LAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM- 201 (240)
Q Consensus 124 ~d~~~~~~aa~-~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r- 201 (240)
+|.+...+.|+ ++++|++.||||.+-+ .....+.+.+++..+... +.+ +++|+++-..
T Consensus 365 ~d~~~a~~~A~~qve~GA~iIDVn~~~~------------~vd~~eem~rvv~~i~~~-~~~-------~~vPlsIDS~~ 424 (1178)
T TIGR02082 365 EDYDEALDIAKQQVENGAQILDINVDYG------------MLDGVAAMKRFLNLLASE-PDI-------STVPLMLDSSE 424 (1178)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC------------CCCHHHHHHHHHHHHHhc-cCC-------CCCeEEEeCCc
Confidence 35666665554 4567999999998711 224556667777766542 000 3677877666
Q ss_pred ---h----------------------hcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 ---V----------------------AKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 ---~----------------------~~~~~~~~~l~~-G~~~itih~ 223 (240)
+ +...++++.+.+ |+..|.+|-
T Consensus 425 ~~v~eaaLk~~~G~~IINsIs~~~g~~~~~~~~~l~~~yga~vV~m~~ 472 (1178)
T TIGR02082 425 WAVLEAGLKCIQGKCIVNSISLKDGEERFIETAKLIKEYGAAVVVMAF 472 (1178)
T ss_pred HHHHHHHHHhcCCCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEec
Confidence 0 022357777888 999999984
No 370
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=59.48 E-value=36 Score=30.90 Aligned_cols=48 Identities=6% Similarity=-0.115 Sum_probs=34.6
Q ss_pred cccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEE
Q psy7344 158 HYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 158 g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~iti 221 (240)
|.|.. +.||+.++.+++. .++||.+---+....+.+++++.|+|++-+
T Consensus 230 Gsg~g-v~~p~~i~~~~e~---------------~~vpVivdAGIg~~sda~~AmelGadgVL~ 277 (326)
T PRK11840 230 GSGLG-IQNPYTIRLIVEG---------------ATVPVLVDAGVGTASDAAVAMELGCDGVLM 277 (326)
T ss_pred cCCCC-CCCHHHHHHHHHc---------------CCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 34444 3599999999986 345777766677777888887778888754
No 371
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=59.41 E-value=45 Score=28.11 Aligned_cols=74 Identities=14% Similarity=0.031 Sum_probs=39.5
Q ss_pred ecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee
Q psy7344 122 CGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM 201 (240)
Q Consensus 122 ~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r 201 (240)
+..+.++ +....+.|+|-|+++.+ .. -+| +-+....++.+++. .++||-+=+|
T Consensus 6 cv~s~~~---a~~A~~~GAdRiELc~~---l~--~GG----lTPS~g~i~~~~~~---------------~~ipv~vMIR 58 (201)
T PF03932_consen 6 CVESLED---ALAAEAGGADRIELCSN---LE--VGG----LTPSLGLIRQAREA---------------VDIPVHVMIR 58 (201)
T ss_dssp EESSHHH---HHHHHHTT-SEEEEEBT---GG--GT-----B---HHHHHHHHHH---------------TTSEEEEE--
T ss_pred EeCCHHH---HHHHHHcCCCEEEECCC---cc--CCC----cCcCHHHHHHHHhh---------------cCCceEEEEC
Confidence 3345444 33344568999999553 21 133 45677777776663 6789888888
Q ss_pred h------------hcHHHHHHHHhC-CCCeEEEe
Q psy7344 202 V------------AKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 202 ~------------~~~~~~~~~l~~-G~~~itih 222 (240)
- +...+-.+.+.+ |+|++.+-
T Consensus 59 pr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG 92 (201)
T PF03932_consen 59 PRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFG 92 (201)
T ss_dssp SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE-
T ss_pred CCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEE
Confidence 1 112344455677 99999883
No 372
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=59.27 E-value=37 Score=30.21 Aligned_cols=77 Identities=9% Similarity=-0.060 Sum_probs=47.1
Q ss_pred HHHcc-CCCEEEecCCCchhhhhcccccc-cccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--h---hcHH
Q psy7344 134 KLAEP-HCDGIDINIGCPQMVAKRGHYGA-YLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM--V---AKRG 206 (240)
Q Consensus 134 ~~le~-~~d~Idin~gCP~~~~~~~g~G~-~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r--~---~~~~ 206 (240)
++++. |+++|-+.-.+-.. . -|+-- .+ -..+.+.+.++.+... +++||++-.. + .++.
T Consensus 27 ri~e~aGf~Ai~~sg~~~a~--~-lG~pD~g~-lt~~e~~~~~~~I~~~-----------~~iPviaD~d~GyG~~~~v~ 91 (285)
T TIGR02317 27 LLAERAGFEAIYLSGAAVAA--S-LGLPDLGI-TTLDEVAEDARRITRV-----------TDLPLLVDADTGFGEAFNVA 91 (285)
T ss_pred HHHHHcCCCEEEEcHHHHHH--h-CCCCCCCC-CCHHHHHHHHHHHHhc-----------cCCCEEEECCCCCCCHHHHH
Confidence 44444 78888775443221 1 12111 12 2455555555665555 7899999888 3 3455
Q ss_pred HHHHHHhC-CCCeEEEeccc
Q psy7344 207 HYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 207 ~~~~~l~~-G~~~itih~R~ 225 (240)
..++.+++ |+.+|+|--.+
T Consensus 92 ~tv~~~~~aG~agi~IEDq~ 111 (285)
T TIGR02317 92 RTVREMEDAGAAAVHIEDQV 111 (285)
T ss_pred HHHHHHHHcCCeEEEEecCC
Confidence 67888899 99999995544
No 373
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=59.19 E-value=61 Score=27.10 Aligned_cols=85 Identities=15% Similarity=0.065 Sum_probs=48.2
Q ss_pred CceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCe
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDI 194 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~ 194 (240)
.|+++.+ .+++ ++.+..+.|+|.|-++..-. +.... .....+++.++++.+. .++
T Consensus 124 ~~iiv~v--~t~~---ea~~a~~~G~d~i~~~~~g~---t~~~~--~~~~~~~~~l~~i~~~---------------~~i 178 (219)
T cd04729 124 CLLMADI--STLE---EALNAAKLGFDIIGTTLSGY---TEETA--KTEDPDFELLKELRKA---------------LGI 178 (219)
T ss_pred CeEEEEC--CCHH---HHHHHHHcCCCEEEccCccc---ccccc--CCCCCCHHHHHHHHHh---------------cCC
Confidence 5665543 3444 34444456899987642201 11000 0112466666666553 456
Q ss_pred eeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 195 NIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 195 pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
|+.+-..+.+..++.+.+..|+|++.+ |+.
T Consensus 179 pvia~GGI~~~~~~~~~l~~GadgV~v-Gsa 208 (219)
T cd04729 179 PVIAEGRINSPEQAAKALELGADAVVV-GSA 208 (219)
T ss_pred CEEEeCCCCCHHHHHHHHHCCCCEEEE-chH
Confidence 777766676666777766669999988 554
No 374
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=58.84 E-value=57 Score=28.23 Aligned_cols=73 Identities=15% Similarity=0.079 Sum_probs=44.6
Q ss_pred HHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee-hh--
Q psy7344 127 KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-VA-- 203 (240)
Q Consensus 127 ~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-~~-- 203 (240)
.+..++...++.|+|.||+-- | ..|-.|+ ..|+.+++|++.+. ...|+|+.+- +.
T Consensus 8 ~~~~EA~~a~~~gaDiID~K~--P----~~GaLGA---~~~~vi~~i~~~~~-------------~~~pvSAtiGDlp~~ 65 (235)
T PF04476_consen 8 RNVEEAEEALAGGADIIDLKN--P----AEGALGA---LFPWVIREIVAAVP-------------GRKPVSATIGDLPMK 65 (235)
T ss_pred CCHHHHHHHHhCCCCEEEccC--C----CCCCCCC---CCHHHHHHHHHHcC-------------CCCceEEEecCCCCC
Confidence 344567677778899999821 1 2233443 46788888887642 2469999887 21
Q ss_pred -cHHH-HHHHHhC-CCCeEEE
Q psy7344 204 -KRGH-YGAYLQD-DWPLLTE 221 (240)
Q Consensus 204 -~~~~-~~~~l~~-G~~~iti 221 (240)
.+.. .+..... |+|+|-+
T Consensus 66 p~~~~~aa~~~a~~GvdyvKv 86 (235)
T PF04476_consen 66 PGTASLAALGAAATGVDYVKV 86 (235)
T ss_pred chHHHHHHHHHHhcCCCEEEE
Confidence 2222 2233345 9999887
No 375
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=58.35 E-value=59 Score=28.43 Aligned_cols=22 Identities=9% Similarity=-0.218 Sum_probs=17.4
Q ss_pred hcHHHHHHHHhC-CCCeEEEecc
Q psy7344 203 AKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 203 ~~~~~~~~~l~~-G~~~itih~R 224 (240)
+.+++-++.+++ ||+.|.+-+=
T Consensus 158 ~~~i~ra~a~~~AGA~~i~lE~v 180 (254)
T cd06557 158 ERLLEDALALEEAGAFALVLECV 180 (254)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCC
Confidence 456778888999 9999988543
No 376
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=58.34 E-value=13 Score=32.16 Aligned_cols=60 Identities=13% Similarity=-0.047 Sum_probs=38.4
Q ss_pred CChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHH
Q psy7344 98 DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175 (240)
Q Consensus 98 ~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~ 175 (240)
.++..++.+..+. +.|+|+-= .+-...++++.+|-|+|+|-+|-.- + ...||...++-.+
T Consensus 162 ~n~~~l~~i~~~~---~vPvIvDA---GiG~pSdaa~AMElG~daVLvNTAi----A--------~A~dPv~MA~Af~ 221 (247)
T PF05690_consen 162 QNPYNLRIIIERA---DVPVIVDA---GIGTPSDAAQAMELGADAVLVNTAI----A--------KAKDPVAMARAFK 221 (247)
T ss_dssp STHHHHHHHHHHG---SSSBEEES------SHHHHHHHHHTT-SEEEESHHH----H--------TSSSHHHHHHHHH
T ss_pred CCHHHHHHHHHhc---CCcEEEeC---CCCCHHHHHHHHHcCCceeehhhHH----h--------ccCCHHHHHHHHH
Confidence 3477777776554 57988863 3334447888999999999999771 1 1368887655444
No 377
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=58.31 E-value=11 Score=33.16 Aligned_cols=30 Identities=13% Similarity=-0.014 Sum_probs=25.7
Q ss_pred ceeEEeecCCHHHHHHHHHHHcc-CCCEEEe
Q psy7344 116 GHSLMFCGNDSKNLTEAAKLAEP-HCDGIDI 145 (240)
Q Consensus 116 pvivqi~g~d~~~~~~aa~~le~-~~d~Idi 145 (240)
++++.+++.+..+..+.++..++ |+|+|++
T Consensus 67 ~vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v 97 (279)
T cd00953 67 KVIFQVGSLNLEESIELARAAKSFGIYAIAS 97 (279)
T ss_pred CEEEEeCcCCHHHHHHHHHHHHHcCCCEEEE
Confidence 47888888889999999999876 8999997
No 378
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=58.03 E-value=1.2e+02 Score=25.95 Aligned_cols=102 Identities=15% Similarity=0.021 Sum_probs=60.1
Q ss_pred eCChhhHHHhhhcccCCCCceeEEee--cC----------CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccc
Q psy7344 97 QDDWPLLTELGFKTRSHMCGHSLMFC--GN----------DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYL 163 (240)
Q Consensus 97 ~~d~eli~~i~~~~~~~~~pvivqi~--g~----------d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l 163 (240)
..+|++++++..... . . ++++|- .+ ...+..+.++.+++ ++..|=++-= .+.|+. -
T Consensus 109 ~~~~~~l~~~~~~fg-~-~-ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi------~~dGt~--~ 177 (234)
T PRK13587 109 IQDTDWLKEMAHTFP-G-R-IYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDI------AKDGKM--S 177 (234)
T ss_pred hcCHHHHHHHHHHcC-C-C-EEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecc------cCcCCC--C
Confidence 456888888765542 1 2 444442 11 12234667777655 5544332211 122332 3
Q ss_pred cCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEeccc
Q psy7344 164 QDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKM 225 (240)
Q Consensus 164 ~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~ 225 (240)
..|.+.++++.+. +++||.+=..+.+..++.+.++.|++++.+ |+.
T Consensus 178 G~~~~li~~l~~~---------------~~ipvi~~GGi~s~edi~~l~~~G~~~viv-G~a 223 (234)
T PRK13587 178 GPNFELTGQLVKA---------------TTIPVIASGGIRHQQDIQRLASLNVHAAII-GKA 223 (234)
T ss_pred ccCHHHHHHHHHh---------------CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE-hHH
Confidence 4788988888764 456777777777777777766349999988 543
No 379
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=57.98 E-value=78 Score=27.04 Aligned_cols=70 Identities=10% Similarity=-0.053 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC-CeeeEEeee
Q psy7344 124 NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN-DINIGCPQM 201 (240)
Q Consensus 124 ~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~-~~pvsvK~r 201 (240)
.++++....|.+.+. +...|++. + .|+. .+++.++++.+. . +.|+.+=..
T Consensus 132 ~~~e~~~ayA~aae~~g~~ivyLe-~----------SG~~--~~~e~I~~v~~~---------------~~~~pl~vGGG 183 (219)
T cd02812 132 LKPEDAAAYALAAEYLGMPIVYLE-Y----------SGAY--GPPEVVRAVKKV---------------LGDTPLIVGGG 183 (219)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEeC-C----------CCCc--CCHHHHHHHHHh---------------cCCCCEEEeCC
Confidence 467777777777766 55667775 3 2332 688888777764 3 568888777
Q ss_pred hhcHHHHHHHHhCCCCeEEE
Q psy7344 202 VAKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 202 ~~~~~~~~~~l~~G~~~iti 221 (240)
+.+..+..++++.|+|.|.+
T Consensus 184 Irs~e~a~~l~~aGAD~VVV 203 (219)
T cd02812 184 IRSGEQAKEMAEAGADTIVV 203 (219)
T ss_pred CCCHHHHHHHHHcCCCEEEE
Confidence 77776666655449999988
No 380
>PLN02417 dihydrodipicolinate synthase
Probab=57.81 E-value=9.6 Score=33.54 Aligned_cols=32 Identities=6% Similarity=-0.192 Sum_probs=27.9
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc-CCCEEEe
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDI 145 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~-~~d~Idi 145 (240)
..|+++.+..++..+..+.++..++ |+|+|++
T Consensus 70 ~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~ 102 (280)
T PLN02417 70 KIKVIGNTGSNSTREAIHATEQGFAVGMHAALH 102 (280)
T ss_pred CCcEEEECCCccHHHHHHHHHHHHHcCCCEEEE
Confidence 4699999988899999999998866 8999998
No 381
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=57.76 E-value=47 Score=32.33 Aligned_cols=22 Identities=5% Similarity=-0.280 Sum_probs=13.8
Q ss_pred hcHHHHHHHHhC-CCCeEEEecc
Q psy7344 203 AKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 203 ~~~~~~~~~l~~-G~~~itih~R 224 (240)
+...+....=.+ |+|++|||+=
T Consensus 295 e~~~d~ieeQAeqGVDf~TIHaG 317 (607)
T PRK09284 295 EIFRDTLIEQAEQGVDYFTIHAG 317 (607)
T ss_pred HHHHHHHHHHHHhCCCEEEEChh
Confidence 333333333334 9999999984
No 382
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=57.76 E-value=41 Score=30.06 Aligned_cols=78 Identities=5% Similarity=-0.162 Sum_probs=46.6
Q ss_pred HHHHcc-CCCEEEec-CCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--h---hcH
Q psy7344 133 AKLAEP-HCDGIDIN-IGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM--V---AKR 205 (240)
Q Consensus 133 a~~le~-~~d~Idin-~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r--~---~~~ 205 (240)
|++++. |++++-+. .+. .. ..-|+--.-+-.++.....++.+... +++||++-+. + .++
T Consensus 29 Arl~e~aGf~ai~~sg~~~-~a--s~lG~pD~g~l~~~e~~~~~~~I~~~-----------~~lPv~aD~dtGyG~~~~v 94 (294)
T TIGR02319 29 AKVIQQAGFPAVHMTGSGT-SA--SMLGLPDLGFTSVSEQAINAKNIVLA-----------VDVPVIMDADAGYGNAMSV 94 (294)
T ss_pred HHHHHHcCCCEEEecHHHH-HH--HHcCCCCcCCCCHHHHHHHHHHHHhc-----------cCCCEEEECCCCCCCcHHH
Confidence 455554 78888763 221 11 10111100023455555666666666 7899999988 3 235
Q ss_pred HHHHHHHhC-CCCeEEEecc
Q psy7344 206 GHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 206 ~~~~~~l~~-G~~~itih~R 224 (240)
...++.+++ |+.+|.|---
T Consensus 95 ~r~V~~~~~aGaagi~IEDq 114 (294)
T TIGR02319 95 WRATREFERVGIVGYHLEDQ 114 (294)
T ss_pred HHHHHHHHHcCCeEEEEECC
Confidence 567888999 9999999554
No 383
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=57.67 E-value=66 Score=29.40 Aligned_cols=77 Identities=10% Similarity=0.020 Sum_probs=43.9
Q ss_pred CCceeEEeecC----CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCC
Q psy7344 114 MCGHSLMFCGN----DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPH 188 (240)
Q Consensus 114 ~~pvivqi~g~----d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~ 188 (240)
+-|+.+|=+.+ |.+.+.+-++.|++ ||+.|-+ .+| |.+.+ +.+..+++.
T Consensus 17 ~~PI~VQSMtnt~T~Dv~atv~QI~~L~~aGceiVRv--avp---------------~~~~A-~al~~I~~~-------- 70 (346)
T TIGR00612 17 DAPIVVQSMTNTDTIDIDSTVAQIRALEEAGCDIVRV--TVP---------------DRESA-AAFEAIKEG-------- 70 (346)
T ss_pred CCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEE--cCC---------------CHHHH-HhHHHHHhC--------
Confidence 36899987654 66666666666655 7777755 222 33322 233334444
Q ss_pred CCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEE
Q psy7344 189 CDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 189 ~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~iti 221 (240)
+++|+.+-+-++. .++-...+ |+|.|-|
T Consensus 71 ---~~iPlVADIHFd~--~lAl~a~~~g~dkiRI 99 (346)
T TIGR00612 71 ---TNVPLVADIHFDY--RLAALAMAKGVAKVRI 99 (346)
T ss_pred ---CCCCEEEeeCCCc--HHHHHHHHhccCeEEE
Confidence 6788888776642 22222333 7777766
No 384
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=57.57 E-value=40 Score=29.87 Aligned_cols=74 Identities=14% Similarity=0.080 Sum_probs=43.8
Q ss_pred HHHHHHHHcc-CCCEEEecCCCchhhhhcccccc-cccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHH
Q psy7344 129 LTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGA-YLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRG 206 (240)
Q Consensus 129 ~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~-~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~ 206 (240)
..++.+.+++ ++|.+-+..| +.||.|.. .---|++++++|-+.+ ++|+..-..-....
T Consensus 150 pe~a~~Fv~~TgvD~LAvsiG-----t~HG~Y~~~~p~L~~~~L~~i~~~~---------------~vPLVlHGgSG~~~ 209 (276)
T cd00947 150 PEEAEEFVEETGVDALAVAIG-----TSHGAYKGGEPKLDFDRLKEIAERV---------------NVPLVLHGGSGIPD 209 (276)
T ss_pred HHHHHHHHHHHCCCEEEeccC-----ccccccCCCCCccCHHHHHHHHHHh---------------CCCEEEeCCCCCCH
Confidence 4456666654 8999999999 45665633 2335888888887764 34554443322222
Q ss_pred HHHHHHhC-CCCeEEEe
Q psy7344 207 HYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 207 ~~~~~l~~-G~~~itih 222 (240)
+-.+.+.+ |+.-|.++
T Consensus 210 e~~~~ai~~Gi~KiNi~ 226 (276)
T cd00947 210 EQIRKAIKLGVCKININ 226 (276)
T ss_pred HHHHHHHHcCCeEEEeC
Confidence 33344444 77666663
No 385
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=57.52 E-value=25 Score=31.17 Aligned_cols=45 Identities=7% Similarity=-0.059 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhhccccccCCCCCCCCeeeE--Eeee-hhcH-HHHHHHHh--C-CCCeEEEec
Q psy7344 167 WPLLTNLVYSPNMVHFVIAEPHCDGNDINIG--CPQM-VAKR-GHYGAYLQ--D-DWPLLTELG 223 (240)
Q Consensus 167 p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvs--vK~r-~~~~-~~~~~~l~--~-G~~~itih~ 223 (240)
+..+.++++.+++. .+||. +|.- +.+| ..+++.+. . |+|++|+|+
T Consensus 72 ~~~l~~~i~~l~~~------------g~~VilD~K~~DI~nTv~~ya~a~~~~~~g~DavTVhp 123 (278)
T PRK00125 72 LAQLERTIAYLREA------------GVLVIADAKRGDIGSTAEAYAKAAFESPLEADAVTVSP 123 (278)
T ss_pred hhHHHHHHHHHHHC------------CCcEEEEeecCChHHHHHHHHHHHhcCccCCcEEEECC
Confidence 44667788887764 34555 5544 5555 56888877 8 999999997
No 386
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=57.24 E-value=1.2e+02 Score=25.78 Aligned_cols=102 Identities=14% Similarity=-0.045 Sum_probs=57.1
Q ss_pred eCChhhHHHhhhcccCCCCceeEEee--cC------CHHHHHHHHHHHccCCCEE-EecCCCchhhhhcccccccccCCH
Q psy7344 97 QDDWPLLTELGFKTRSHMCGHSLMFC--GN------DSKNLTEAAKLAEPHCDGI-DINIGCPQMVAKRGHYGAYLQDDW 167 (240)
Q Consensus 97 ~~d~eli~~i~~~~~~~~~pvivqi~--g~------d~~~~~~aa~~le~~~d~I-din~gCP~~~~~~~g~G~~l~~~p 167 (240)
..+ +++.++...... ..+++.|- ++ ...++.++++.+++.++.+ -++.. +.|++ -..|.
T Consensus 111 ~~~-~~~~~~~~~~~~--~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~di~-------~~G~~--~g~~~ 178 (233)
T cd04723 111 LPS-DDDEDRLAALGE--QRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEELIVLDID-------RVGSG--QGPDL 178 (233)
T ss_pred ccc-hHHHHHHHhcCC--CCeEEEEeccCCeeccccCcCCHHHHHHHHHHhCCeEEEEEcC-------ccccC--CCcCH
Confidence 345 777776655432 12555542 22 2234556666664434332 22222 11222 24688
Q ss_pred HHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhCCCCeEEEecccc
Q psy7344 168 PLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQDDWPLLTELGKMA 226 (240)
Q Consensus 168 ~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~G~~~itih~R~~ 226 (240)
+.++++.+. +.+|+.+=..+.+..++.+.+..|++.+.+ |+.-
T Consensus 179 ~~~~~i~~~---------------~~ipvi~~GGi~s~edi~~l~~~G~~~viv-Gsal 221 (233)
T cd04723 179 ELLERLAAR---------------ADIPVIAAGGVRSVEDLELLKKLGASGALV-ASAL 221 (233)
T ss_pred HHHHHHHHh---------------cCCCEEEeCCCCCHHHHHHHHHcCCCEEEE-ehHH
Confidence 888888764 456777777676666666665559999988 5543
No 387
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=57.17 E-value=39 Score=29.80 Aligned_cols=73 Identities=12% Similarity=-0.046 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee---
Q psy7344 126 SKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM--- 201 (240)
Q Consensus 126 ~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r--- 201 (240)
++.+.-+++.-.+ |+|.|-.+.- .+++.++++++... .||.+-.-
T Consensus 165 ~~~v~~aaRlaaelGADIiK~~yt----------------g~~e~F~~vv~~~~---------------vpVviaGG~k~ 213 (265)
T COG1830 165 ADLVGYAARLAAELGADIIKTKYT----------------GDPESFRRVVAACG---------------VPVVIAGGPKT 213 (265)
T ss_pred HHHHHHHHHHHHHhcCCeEeecCC----------------CChHHHHHHHHhCC---------------CCEEEeCCCCC
Confidence 3344445555544 7888766433 57788889988643 34443322
Q ss_pred --hhcHHHHHHHHhC-CCCeEEEecccccccC
Q psy7344 202 --VAKRGHYGAYLQD-DWPLLTELGKMAMLVG 230 (240)
Q Consensus 202 --~~~~~~~~~~l~~-G~~~itih~R~~~~~~ 230 (240)
...+++....+-+ |+.++.+ ||+-.|+.
T Consensus 214 ~~~~~~l~~~~~ai~aGa~G~~~-GRNifQ~~ 244 (265)
T COG1830 214 ETEREFLEMVTAAIEAGAMGVAV-GRNIFQHE 244 (265)
T ss_pred CChHHHHHHHHHHHHccCcchhh-hhhhhccC
Confidence 3445666666777 9999998 99999973
No 388
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=57.08 E-value=44 Score=28.69 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=16.3
Q ss_pred HHHHHHHHHcc-CCCEEEecCCCch
Q psy7344 128 NLTEAAKLAEP-HCDGIDINIGCPQ 151 (240)
Q Consensus 128 ~~~~aa~~le~-~~d~Idin~gCP~ 151 (240)
.+.+..+.+.+ |+++|++..+.|.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~ 38 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPH 38 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCcc
Confidence 45566666654 8899998766554
No 389
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=56.96 E-value=1.3e+02 Score=26.10 Aligned_cols=94 Identities=11% Similarity=-0.031 Sum_probs=56.1
Q ss_pred CChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHh
Q psy7344 98 DDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSP 177 (240)
Q Consensus 98 ~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~ 177 (240)
.+.+.+..+...+ +.|++.+=+-.++. .+.+..+.|+|+|-+... .+ +++.++++++..
T Consensus 98 g~~~~l~~v~~~v---~iPvl~kdfi~~~~---qi~~a~~~GAD~VlLi~~--------------~l-~~~~l~~li~~a 156 (260)
T PRK00278 98 GSLEYLRAARAAV---SLPVLRKDFIIDPY---QIYEARAAGADAILLIVA--------------AL-DDEQLKELLDYA 156 (260)
T ss_pred CCHHHHHHHHHhc---CCCEEeeeecCCHH---HHHHHHHcCCCEEEEEec--------------cC-CHHHHHHHHHHH
Confidence 3466666665543 47887653334444 344445568999988544 12 457788888876
Q ss_pred hhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccccc
Q psy7344 178 NMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAM 227 (240)
Q Consensus 178 ~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~~ 227 (240)
+.. ...+.+- +.+..+..+ +.+ |++.|.+|+|...
T Consensus 157 ~~l------------Gl~~lve--vh~~~E~~~-A~~~gadiIgin~rdl~ 192 (260)
T PRK00278 157 HSL------------GLDVLVE--VHDEEELER-ALKLGAPLIGINNRNLK 192 (260)
T ss_pred HHc------------CCeEEEE--eCCHHHHHH-HHHcCCCEEEECCCCcc
Confidence 653 2222221 234445544 446 9999999998764
No 390
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=56.62 E-value=83 Score=26.45 Aligned_cols=75 Identities=16% Similarity=0.014 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh
Q psy7344 124 NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV 202 (240)
Q Consensus 124 ~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~ 202 (240)
.+++.+.++++.+.+ ++|.|-|.=. .|. ..|+.+.++++.+++.. .++|+.+-.--
T Consensus 134 ~~~~~~~~~~~~~~~~g~~~i~l~Dt----------~G~---~~P~~v~~lv~~~~~~~----------~~~~l~~H~Hn 190 (237)
T PF00682_consen 134 TDPEELLELAEALAEAGADIIYLADT----------VGI---MTPEDVAELVRALREAL----------PDIPLGFHAHN 190 (237)
T ss_dssp SSHHHHHHHHHHHHHHT-SEEEEEET----------TS----S-HHHHHHHHHHHHHHS----------TTSEEEEEEBB
T ss_pred ccHHHHHHHHHHHHHcCCeEEEeeCc----------cCC---cCHHHHHHHHHHHHHhc----------cCCeEEEEecC
Confidence 478888999988866 7888766211 233 58999999999999982 23677775552
Q ss_pred hcHHHHHHH--HhC-CCCeEEE
Q psy7344 203 AKRGHYGAY--LQD-DWPLLTE 221 (240)
Q Consensus 203 ~~~~~~~~~--l~~-G~~~iti 221 (240)
+.=..++.. ..+ |++.|-.
T Consensus 191 d~Gla~An~laA~~aGa~~id~ 212 (237)
T PF00682_consen 191 DLGLAVANALAALEAGADRIDG 212 (237)
T ss_dssp TTS-HHHHHHHHHHTT-SEEEE
T ss_pred CccchhHHHHHHHHcCCCEEEc
Confidence 211222322 234 9999643
No 391
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=56.56 E-value=43 Score=28.20 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=42.6
Q ss_pred eeCChhhH-HHhhhcccCCCCceeEEeecC-CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHH
Q psy7344 96 LQDDWPLL-TELGFKTRSHMCGHSLMFCGN-DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 173 (240)
Q Consensus 96 l~~d~eli-~~i~~~~~~~~~pvivqi~g~-d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~i 173 (240)
.+.||+.+ +++ ..|++ |.|+ +++...++.+.+ ...|||+|.|= .. .. | .+|+++++++
T Consensus 142 ~~~dw~~l~~~~-------~~p~~--LAGGi~peNv~~ai~~~--~p~gvDvsSgv---E~-~~--G---~KD~~ki~~f 201 (210)
T PRK01222 142 KTFDWSLLPAGL-------AKPWI--LAGGLNPDNVAEAIRQV--RPYGVDVSSGV---ES-AP--G---IKDPEKIRAF 201 (210)
T ss_pred CccchHHhhhcc-------CCCEE--EECCCCHHHHHHHHHhc--CCCEEEecCce---EC-CC--C---CcCHHHHHHH
Confidence 44568776 322 24665 4444 888777777643 45799999881 11 11 2 3899999999
Q ss_pred HHHhhhc
Q psy7344 174 VYSPNMV 180 (240)
Q Consensus 174 v~~~~~~ 180 (240)
++.++..
T Consensus 202 ~~~~~~~ 208 (210)
T PRK01222 202 IEAVKSA 208 (210)
T ss_pred HHHHHhh
Confidence 9988764
No 392
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=56.43 E-value=42 Score=29.87 Aligned_cols=75 Identities=9% Similarity=-0.009 Sum_probs=45.0
Q ss_pred HHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHH
Q psy7344 128 NLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRG 206 (240)
Q Consensus 128 ~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~ 206 (240)
+..++.+.+++ |+|.+-+..| +.||-|...---|++++++|.+. +++|+..-..-....
T Consensus 157 ~peeA~~Fv~~TgvD~LAvaiG-----t~HG~Y~~~p~L~~~~L~~I~~~---------------~~iPLVLHGgSG~~~ 216 (285)
T PRK07709 157 DPAECKHLVEATGIDCLAPALG-----SVHGPYKGEPNLGFAEMEQVRDF---------------TGVPLVLHGGTGIPT 216 (285)
T ss_pred CHHHHHHHHHHhCCCEEEEeec-----ccccCcCCCCccCHHHHHHHHHH---------------HCCCEEEeCCCCCCH
Confidence 45566666654 9999999998 34444432223478888877654 455665544432233
Q ss_pred HHHHHHhC-CCCeEEEe
Q psy7344 207 HYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 207 ~~~~~l~~-G~~~itih 222 (240)
+-.+.+.+ |+.-|.+.
T Consensus 217 e~~~~ai~~Gi~KiNi~ 233 (285)
T PRK07709 217 ADIEKAISLGTSKINVN 233 (285)
T ss_pred HHHHHHHHcCCeEEEeC
Confidence 34444455 77777774
No 393
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=56.42 E-value=43 Score=30.75 Aligned_cols=92 Identities=14% Similarity=-0.079 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHcc-CCCEEEecCCCchhhhhccccc---------ccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 126 SKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYG---------AYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 126 ~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G---------~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
++.+.-++++..+ |+|.|-++.-=-...-.+-++| -..-...+.++.++++...+ .+|
T Consensus 216 ~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag------------~vp 283 (348)
T PRK09250 216 ADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMG------------RRG 283 (348)
T ss_pred HHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccC------------Cce
Confidence 4445556776644 8999988753100000000000 00112344555555543211 345
Q ss_pred eEEeee----hhcHHHHHHHH---hC-CCCeEEEecccccccC
Q psy7344 196 IGCPQM----VAKRGHYGAYL---QD-DWPLLTELGKMAMLVG 230 (240)
Q Consensus 196 vsvK~r----~~~~~~~~~~l---~~-G~~~itih~R~~~~~~ 230 (240)
|.+-.- .+++.+.++.. .+ |+.++++ ||.-.|+.
T Consensus 284 VviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~i-GRNIfQ~~ 325 (348)
T PRK09250 284 LINSGGASKGEDDLLDAVRTAVINKRAGGMGLII-GRKAFQRP 325 (348)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhh-chhhhcCC
Confidence 544332 44567777777 77 9999999 99999974
No 394
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=56.21 E-value=1e+02 Score=25.59 Aligned_cols=80 Identities=9% Similarity=-0.016 Sum_probs=48.0
Q ss_pred CCceeEEe--ecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCC
Q psy7344 114 MCGHSLMF--CGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCD 190 (240)
Q Consensus 114 ~~pvivqi--~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~ 190 (240)
..|+-+.+ ..-+.+....+++...+ |+|.|-..-|-+. -...++.++.+.+.++.
T Consensus 116 g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~-----------~~at~~~v~~~~~~~~~----------- 173 (203)
T cd00959 116 GAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGP-----------GGATVEDVKLMKEAVGG----------- 173 (203)
T ss_pred CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCC-----------CCCCHHHHHHHHHHhCC-----------
Confidence 35654433 22356778888888754 8999999877421 12467766666665432
Q ss_pred CCCeeeEEeee--hhcHHHHHHHHhCCCCeE
Q psy7344 191 GNDINIGCPQM--VAKRGHYGAYLQDDWPLL 219 (240)
Q Consensus 191 ~~~~pvsvK~r--~~~~~~~~~~l~~G~~~i 219 (240)
++-+|.. +.+..++.++++.|++.|
T Consensus 174 ----~v~ik~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 174 ----RVGVKAAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred ----CceEEEeCCCCCHHHHHHHHHhChhhc
Confidence 3445555 555566666665576654
No 395
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=55.43 E-value=1.1e+02 Score=26.48 Aligned_cols=102 Identities=6% Similarity=-0.113 Sum_probs=57.0
Q ss_pred hhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh
Q psy7344 100 WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 100 ~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~ 179 (240)
.++++++...+ ++-+|++| .+.+..++.+.++.|++-|-+|-- ...+|+.+.++.+...+
T Consensus 63 ~~~i~~i~~~~-----~~~v~vgG-GIrs~e~~~~~l~~Ga~~vvigT~--------------a~~~p~~~~~~~~~~g~ 122 (243)
T TIGR01919 63 EMMLEEVVKLL-----VVVEELSG-GRRDDSSLRAALTGGRARVNGGTA--------------ALENPWWAAAVIRYGGD 122 (243)
T ss_pred HHHHHHHHHHC-----CCCEEEcC-CCCCHHHHHHHHHcCCCEEEECch--------------hhCCHHHHHHHHHHccc
Confidence 56777775432 34456644 344445566677778777755433 46899999999876532
Q ss_pred ccccccCCCCC--CCCeeeEEeee---hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 180 VHFVIAEPHCD--GNDINIGCPQM---VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 180 ~~~~i~~~~~~--~~~~pvsvK~r---~~~~~~~~~~l~~-G~~~itih~ 223 (240)
.+ +-+=|+. +....+..+.. -.+..++++.+++ |+..+.++.
T Consensus 123 ~i--vvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~td 170 (243)
T TIGR01919 123 IV--AVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTD 170 (243)
T ss_pred cE--EEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEe
Confidence 21 1000000 00001111111 1256899999999 999887754
No 396
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=55.34 E-value=52 Score=31.28 Aligned_cols=80 Identities=6% Similarity=-0.053 Sum_probs=48.4
Q ss_pred eEEeecC-CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 118 SLMFCGN-DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 118 ivqi~g~-d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
.++|+|- ++++...++ +.|+|.+=+.+--+++. --+++.+++|.+++. . ..+-|
T Consensus 258 ~vKICGit~~eda~~a~---~~GaD~lGfIf~~~SpR----------~V~~~~a~~i~~~l~-v-----------~~VgV 312 (454)
T PRK09427 258 ENKVCGLTRPQDAKAAY---DAGAVYGGLIFVEKSPR----------YVSLEQAQEIIAAAP-L-----------RYVGV 312 (454)
T ss_pred ccccCCCCCHHHHHHHH---hCCCCEEeeEeCCCCCC----------CCCHHHHHHHHHhCC-C-----------CEEEE
Confidence 4577763 555443333 35778777654322221 147999999988754 1 22334
Q ss_pred EEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 197 GCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 197 svK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
++. .+..++.+.+++ +.|.+.+||--
T Consensus 313 fv~---~~~~~i~~i~~~~~lD~vQLHG~e 339 (454)
T PRK09427 313 FRN---ADIEDIVDIAKQLSLAAVQLHGDE 339 (454)
T ss_pred EeC---CCHHHHHHHHHHcCCCEEEeCCCC
Confidence 432 345567777888 99999999943
No 397
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=55.25 E-value=29 Score=32.89 Aligned_cols=49 Identities=18% Similarity=0.337 Sum_probs=33.7
Q ss_pred hhhHHHhhhcccCC--CCceeEEeecCCH---HHHHHHHHHHcc-CCCEEEecCC
Q psy7344 100 WPLLTELGFKTRSH--MCGHSLMFCGNDS---KNLTEAAKLAEP-HCDGIDINIG 148 (240)
Q Consensus 100 ~eli~~i~~~~~~~--~~pvivqi~g~d~---~~~~~aa~~le~-~~d~Idin~g 148 (240)
-+-|+.+..+++.+ ..+..||+.|+.| +++.++.++..+ |++.|.||.-
T Consensus 93 ~eqi~~Ml~~lk~e~p~~~~aIq~tGGEPTvr~DL~eiv~~a~e~g~~hVqinTn 147 (475)
T COG1964 93 LEQIREMLRNLKKEHPVGANAVQFTGGEPTLRDDLIEIIKIAREEGYDHVQLNTN 147 (475)
T ss_pred HHHHHHHHHHHHhcCCCCCceeEecCCCccchhhHHHHHHHHhhcCccEEEEccC
Confidence 35555555555443 2458899998865 577788888754 8899998865
No 398
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=54.96 E-value=56 Score=30.77 Aligned_cols=73 Identities=12% Similarity=-0.095 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh
Q psy7344 124 NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV 202 (240)
Q Consensus 124 ~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~ 202 (240)
.+.+.+.+.++.+.+ ++|-|-| +-=. -+-+|....++|+++++. ..+||.+-.--
T Consensus 153 Ht~e~yv~~akel~~~g~DSIci----------KDma---GlltP~~ayelVk~iK~~-----------~~~pv~lHtH~ 208 (472)
T COG5016 153 HTLEYYVELAKELLEMGVDSICI----------KDMA---GLLTPYEAYELVKAIKKE-----------LPVPVELHTHA 208 (472)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEe----------eccc---ccCChHHHHHHHHHHHHh-----------cCCeeEEeccc
Confidence 478889999998866 6666633 1111 246899999999999998 66777765542
Q ss_pred h---cHHHHHHHHhCCCCeEE
Q psy7344 203 A---KRGHYGAYLQDDWPLLT 220 (240)
Q Consensus 203 ~---~~~~~~~~l~~G~~~it 220 (240)
. ...-+.+++|.|+|.|-
T Consensus 209 TsG~a~m~ylkAvEAGvD~iD 229 (472)
T COG5016 209 TSGMAEMTYLKAVEAGVDGID 229 (472)
T ss_pred ccchHHHHHHHHHHhCcchhh
Confidence 1 23345555565988864
No 399
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=54.85 E-value=43 Score=28.23 Aligned_cols=73 Identities=11% Similarity=0.055 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--
Q psy7344 125 DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM-- 201 (240)
Q Consensus 125 d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r-- 201 (240)
..++..+.++.+.+ |++.||++..... ..+++.++++.+.+.. ..+..-.|
T Consensus 12 ~~~~k~~i~~~L~~~Gv~~iEvg~~~~~------------~~~~~~v~~~~~~~~~--------------~~~~~~~~~~ 65 (237)
T PF00682_consen 12 STEEKLEIAKALDEAGVDYIEVGFPFAS------------EDDFEQVRRLREALPN--------------ARLQALCRAN 65 (237)
T ss_dssp -HHHHHHHHHHHHHHTTSEEEEEHCTSS------------HHHHHHHHHHHHHHHS--------------SEEEEEEESC
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcccccC------------HHHHHHhhhhhhhhcc--------------cccceeeeeh
Confidence 45666777888865 8999999822111 1356666666665443 25555556
Q ss_pred hhcHHHHHHHHhC-CCCeEEEec
Q psy7344 202 VAKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 202 ~~~~~~~~~~l~~-G~~~itih~ 223 (240)
..+.....+.+.. |++.+.+-.
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~ 88 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFI 88 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEE
T ss_pred HHHHHHHHHhhHhccCCEEEecC
Confidence 3445555777777 999988744
No 400
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=54.79 E-value=73 Score=29.37 Aligned_cols=51 Identities=12% Similarity=-0.015 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHH--ccCCCEEEecCCCchhhhhccccc-ccccCCHHHHHHHHHHhhhc
Q psy7344 125 DSKNLTEAAKLA--EPHCDGIDINIGCPQMVAKRGHYG-AYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 125 d~~~~~~aa~~l--e~~~d~Idin~gCP~~~~~~~g~G-~~l~~~p~~i~~iv~~~~~~ 180 (240)
||++..++++.. ..++|.+-+..| +.||-|. ..---|++++++|-+.+++.
T Consensus 196 dPeeA~~Fv~~t~~~TgvD~LAvAiG-----T~HG~Yk~~~p~Ld~d~L~~I~~~~~~~ 249 (357)
T TIGR01520 196 QPEDVYYAYEELSKISPNFSIAAAFG-----NVHGVYKPGNVKLTPDILADGQEYVSEK 249 (357)
T ss_pred CHHHHHHHHHHhccCCCcceeeeeec-----cccCCcCCCCCccCHHHHHHHHHHHHHh
Confidence 555555555544 237899999888 3455552 22234899999997666544
No 401
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=54.76 E-value=1.4e+02 Score=25.75 Aligned_cols=68 Identities=16% Similarity=-0.025 Sum_probs=43.0
Q ss_pred hhhHHHhhhcccCCCCceeEEee---cCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHH
Q psy7344 100 WPLLTELGFKTRSHMCGHSLMFC---GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175 (240)
Q Consensus 100 ~eli~~i~~~~~~~~~pvivqi~---g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~ 175 (240)
.+.+.+.....+.....+.+++. ..+++.+.+.++.+.+ |+|.|-|- --.|. ..|+.+.++++
T Consensus 111 ~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~----------DT~G~---~~P~~v~~lv~ 177 (263)
T cd07943 111 ADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVT----------DSAGA---MLPDDVRERVR 177 (263)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEc----------CCCCC---cCHHHHHHHHH
Confidence 34444444433333334555552 2478888888888865 77776551 11333 59999999999
Q ss_pred Hhhhc
Q psy7344 176 SPNMV 180 (240)
Q Consensus 176 ~~~~~ 180 (240)
.+++.
T Consensus 178 ~l~~~ 182 (263)
T cd07943 178 ALREA 182 (263)
T ss_pred HHHHh
Confidence 99987
No 402
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=54.74 E-value=1.4e+02 Score=27.24 Aligned_cols=95 Identities=12% Similarity=-0.002 Sum_probs=48.6
Q ss_pred CCCceeE-Ee-ec---CCHHHHHHHHHHH-c-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhcccccc
Q psy7344 113 HMCGHSL-MF-CG---NDSKNLTEAAKLA-E-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIA 185 (240)
Q Consensus 113 ~~~pviv-qi-~g---~d~~~~~~aa~~l-e-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~ 185 (240)
...|+++ -+ ++ .++++..+-+..+ . .|+++|.|--|. . ...+.++.++ ..++||++
T Consensus 94 a~~a~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~-----------~---~~~~~I~~l~---~~GIPV~g 156 (332)
T PLN02424 94 ANRPLLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGS-----------P---SRVTAAKAIV---EAGIAVMG 156 (332)
T ss_pred CCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCc-----------H---HHHHHHHHHH---HcCCCEEE
Confidence 3456655 33 23 3777776655544 4 589999886551 0 1112333333 44666651
Q ss_pred CCCCCCCCeee----EEeee----hhcHHHHHHHHhC-CCCeEEEecc
Q psy7344 186 EPHCDGNDINI----GCPQM----VAKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 186 ~~~~~~~~~pv----svK~r----~~~~~~~~~~l~~-G~~~itih~R 224 (240)
-=.++-...-. -++.| ...+++-++.+++ ||..|.+-+-
T Consensus 157 HiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~V 204 (332)
T PLN02424 157 HVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVLECV 204 (332)
T ss_pred eecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCC
Confidence 10000000000 01111 2346778889999 9999988553
No 403
>PLN02444 HMP-P synthase
Probab=54.69 E-value=55 Score=32.00 Aligned_cols=22 Identities=5% Similarity=-0.274 Sum_probs=13.8
Q ss_pred hcHHHHHHHHhC-CCCeEEEecc
Q psy7344 203 AKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 203 ~~~~~~~~~l~~-G~~~itih~R 224 (240)
+...+....=.+ |+|++|||+=
T Consensus 300 d~~~d~ieeQaeqGVDfmTIH~G 322 (642)
T PLN02444 300 EVFRETLIEQAEQGVDYFTIHAG 322 (642)
T ss_pred HHHHHHHHHHHHhCCCEEEEChh
Confidence 333333333334 9999999974
No 404
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=54.60 E-value=54 Score=30.79 Aligned_cols=20 Identities=5% Similarity=-0.323 Sum_probs=13.1
Q ss_pred HHHHHHHHhC-CCCeEEEecc
Q psy7344 205 RGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 205 ~~~~~~~l~~-G~~~itih~R 224 (240)
..+..+.=.+ |+|++|||+=
T Consensus 145 ~~~~ie~qa~~GVDfmTiHcG 165 (431)
T PRK13352 145 LFDVIEKQAKDGVDFMTIHCG 165 (431)
T ss_pred HHHHHHHHHHhCCCEEEEccc
Confidence 3333333345 9999999983
No 405
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=54.41 E-value=45 Score=29.64 Aligned_cols=74 Identities=15% Similarity=0.106 Sum_probs=44.4
Q ss_pred HHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHH
Q psy7344 129 LTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGH 207 (240)
Q Consensus 129 ~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~ 207 (240)
..++.+.+++ ++|.+-+..| +.||-|-..---|++++++|-+. +++|+..-..-....+
T Consensus 155 peea~~Fv~~TgvD~LAvaiG-----t~HG~yk~~p~Ldf~~L~~I~~~---------------~~iPLVlHGgSG~~~e 214 (282)
T TIGR01858 155 PQEAKEFVEATGVDSLAVAIG-----TAHGLYKKTPKLDFDRLAEIREV---------------VDVPLVLHGASDVPDE 214 (282)
T ss_pred HHHHHHHHHHHCcCEEecccC-----ccccCcCCCCccCHHHHHHHHHH---------------hCCCeEEecCCCCCHH
Confidence 3456666654 9999999999 34554443223478877777654 4556655554222233
Q ss_pred HHHHHhC-CCCeEEEe
Q psy7344 208 YGAYLQD-DWPLLTEL 222 (240)
Q Consensus 208 ~~~~l~~-G~~~itih 222 (240)
-.+.+.+ |+.-|.+.
T Consensus 215 ~~~~ai~~Gi~KiNi~ 230 (282)
T TIGR01858 215 DVRRTIELGICKVNVA 230 (282)
T ss_pred HHHHHHHcCCeEEEeC
Confidence 3444455 88777773
No 406
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=54.22 E-value=1.5e+02 Score=25.86 Aligned_cols=54 Identities=13% Similarity=0.021 Sum_probs=36.7
Q ss_pred CCceeEEee---cCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 114 MCGHSLMFC---GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 114 ~~pvivqi~---g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
...+.+++. +.+++...+.++.+.+ +++.|-|- --.| ...|+.+.++++.+++.
T Consensus 125 G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~----------Dt~G---~~~P~~v~~~~~~~~~~ 182 (262)
T cd07948 125 GIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIA----------DTVG---IATPRQVYELVRTLRGV 182 (262)
T ss_pred CCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEC----------CcCC---CCCHHHHHHHHHHHHHh
Confidence 344555552 3567888888888765 67765441 1123 36999999999999987
No 407
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=53.96 E-value=1.2e+02 Score=26.78 Aligned_cols=31 Identities=3% Similarity=-0.066 Sum_probs=18.9
Q ss_pred CCeeeEEeeehhcHHHHHHHHhC-CCCeEEEe
Q psy7344 192 NDINIGCPQMVAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 192 ~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih 222 (240)
+++|+..-..+.+..++.+.++. ++|.+.+.
T Consensus 227 ~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~ 258 (316)
T cd03319 227 SPLPIMADESCFSAADAARLAGGGAYDGINIK 258 (316)
T ss_pred CCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 45566665555555666666666 66666653
No 408
>KOG0134|consensus
Probab=53.93 E-value=40 Score=31.45 Aligned_cols=86 Identities=16% Similarity=0.193 Sum_probs=50.0
Q ss_pred HHHHHHHHHH-ccCCCEEEecCCCchhhh---------hcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 127 KNLTEAAKLA-EPHCDGIDINIGCPQMVA---------KRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 127 ~~~~~aa~~l-e~~~d~Idin~gCP~~~~---------~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+.++-|++.+ |-|+|||+|+-.-=.-.. ..-.||.++-..=-.+-+++.++++.|+. . ...-+
T Consensus 174 Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~---s----~~~l~ 246 (400)
T KOG0134|consen 174 DRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEIPA---S----RVFLR 246 (400)
T ss_pred HHHHHHHHHHHhcCCCeEEEecccchhhhhhccCCCCCcccccCcchhhhhhhhHHHHHHHHHhhcc---c----cceEE
Confidence 3455677777 669999999743111110 11247776644444557888888887421 0 11122
Q ss_pred EEe--------eehhcHHHHHHHHhC-CCCeE
Q psy7344 197 GCP--------QMVAKRGHYGAYLQD-DWPLL 219 (240)
Q Consensus 197 svK--------~r~~~~~~~~~~l~~-G~~~i 219 (240)
..| ...++...++..+++ |.|.+
T Consensus 247 ~~~~~~fq~~~~t~d~~~~~~~~y~~~g~df~ 278 (400)
T KOG0134|consen 247 GSPTNEFQDIGITIDDAIKMCGLYEDGGLDFV 278 (400)
T ss_pred ecCchhhhhccccccchHHHHHHHHhcccchh
Confidence 233 114567788888888 99843
No 409
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=53.79 E-value=50 Score=29.37 Aligned_cols=74 Identities=15% Similarity=0.077 Sum_probs=43.8
Q ss_pred HHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHH
Q psy7344 129 LTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGH 207 (240)
Q Consensus 129 ~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~ 207 (240)
..++.+.+++ ++|.+-+..| +.||-|...---|++.+++|-+. +++|+..-..-....+
T Consensus 157 peeA~~Fv~~TgvD~LAvaiG-----t~HG~y~~~p~Ld~~~L~~I~~~---------------~~iPLVlHGgSG~~~e 216 (284)
T PRK12737 157 PDAAAEFVERTGIDSLAVAIG-----TAHGLYKGEPKLDFERLAEIREK---------------VSIPLVLHGASGVPDE 216 (284)
T ss_pred HHHHHHHHHHhCCCEEeeccC-----ccccccCCCCcCCHHHHHHHHHH---------------hCCCEEEeCCCCCCHH
Confidence 3556666654 9999999999 34555533222478877777654 3456644444222233
Q ss_pred HHHHHhC-CCCeEEEe
Q psy7344 208 YGAYLQD-DWPLLTEL 222 (240)
Q Consensus 208 ~~~~l~~-G~~~itih 222 (240)
-.+.+.+ |+.-|.+.
T Consensus 217 ~~~kai~~Gi~KiNi~ 232 (284)
T PRK12737 217 DVKKAISLGICKVNVA 232 (284)
T ss_pred HHHHHHHCCCeEEEeC
Confidence 3444455 88777774
No 410
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=53.74 E-value=18 Score=30.08 Aligned_cols=67 Identities=22% Similarity=0.238 Sum_probs=37.6
Q ss_pred eeeCChhhHHHhhhcccCCCCceeEEeecC-CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHH
Q psy7344 95 YLQDDWPLLTELGFKTRSHMCGHSLMFCGN-DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 173 (240)
Q Consensus 95 ~l~~d~eli~~i~~~~~~~~~pvivqi~g~-d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~i 173 (240)
....||+++.++..... ..|+++ .|+ +++...++.+. ..+.|||++.| ....-| .+|+++++++
T Consensus 130 G~~~dw~~~~~~~~~~~--~~p~iL--AGGl~p~NV~~ai~~--~~p~gvDvsSG------vE~~pG---~KD~~ki~~f 194 (197)
T PF00697_consen 130 GKTFDWSLLKKIVESYS--PKPVIL--AGGLNPENVREAIRQ--VRPYGVDVSSG------VETSPG---VKDPEKIKAF 194 (197)
T ss_dssp SS---GGGGCCCHHT-G--TSTEEE--ESS--TTTHHHHHHH--C--SEEEESGG------GEEETT---EE-HHHHHHH
T ss_pred CcccCHHHhhhhhhhcc--cCcEEE--EcCCChHHHHHHHHh--cCceEEEeCCc------cccCCC---CCCHHHHHHH
Confidence 33457998888765322 356654 444 77776666662 35779999988 111112 2899999998
Q ss_pred HHH
Q psy7344 174 VYS 176 (240)
Q Consensus 174 v~~ 176 (240)
+++
T Consensus 195 v~~ 197 (197)
T PF00697_consen 195 VEA 197 (197)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 411
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=53.70 E-value=17 Score=31.48 Aligned_cols=59 Identities=14% Similarity=-0.077 Sum_probs=39.9
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHH
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~ 175 (240)
++..+.-+.... +.|+||--+-+.+. +++..+|-|||+|.+|-.- + -..||-..++-.+
T Consensus 170 n~~~l~iiie~a---~VPviVDAGiG~pS---dAa~aMElG~DaVL~NTAi----A--------~A~DPv~MA~Af~ 228 (262)
T COG2022 170 NPYNLEIIIEEA---DVPVIVDAGIGTPS---DAAQAMELGADAVLLNTAI----A--------RAKDPVAMARAFA 228 (262)
T ss_pred CHHHHHHHHHhC---CCCEEEeCCCCChh---HHHHHHhcccceeehhhHh----h--------ccCChHHHHHHHH
Confidence 466666665543 58999874445554 6888899999999999771 1 1268877655544
No 412
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=53.68 E-value=1.3e+02 Score=25.96 Aligned_cols=86 Identities=6% Similarity=-0.176 Sum_probs=54.7
Q ss_pred eeEEeecCCHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
+++.|.+.+.+++...++.+. .++|.||+=.=-- . . ..+.+.+.+++..+++.. ..+|
T Consensus 18 i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l-~--------~--~~~~~~~~~~~~~l~~~~----------~~~P 76 (253)
T PRK02412 18 IIVPIMGKTLEEVLAEALAISKYDADIIEWRADFL-E--------K--ISDVESVLAAAPAIREKF----------AGKP 76 (253)
T ss_pred EEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEechh-h--------c--cCCHHHHHHHHHHHHHhc----------CCCc
Confidence 566778889998877776654 4789999854410 0 0 134566666666666641 3568
Q ss_pred eEEeeeh-----------hcHHHHHHHHhC-C-CCeEEEec
Q psy7344 196 IGCPQMV-----------AKRGHYGAYLQD-D-WPLLTELG 223 (240)
Q Consensus 196 vsvK~r~-----------~~~~~~~~~l~~-G-~~~itih~ 223 (240)
+.+-.|. +...++.+.+.. | +++|.|--
T Consensus 77 iI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl 117 (253)
T PRK02412 77 LLFTFRTAKEGGEIALSDEEYLALIKAVIKSGLPDYIDVEL 117 (253)
T ss_pred EEEEECChhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEec
Confidence 8887772 123455566667 7 89988854
No 413
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=53.17 E-value=1e+02 Score=26.39 Aligned_cols=90 Identities=9% Similarity=-0.028 Sum_probs=56.9
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
+.++|+++...+ ..| +++ |+.+.++.++.+.++.|++-|=+|.. ...||+.++++.+...
T Consensus 64 n~~~I~~i~~~~---~~p--i~v-GGGIrs~e~v~~~l~~Ga~kvvigt~--------------a~~~~~~l~~~~~~fg 123 (234)
T PRK13587 64 EFDYIKSLRRLT---TKD--IEV-GGGIRTKSQIMDYFAAGINYCIVGTK--------------GIQDTDWLKEMAHTFP 123 (234)
T ss_pred hHHHHHHHHhhc---CCe--EEE-cCCcCCHHHHHHHHHCCCCEEEECch--------------HhcCHHHHHHHHHHcC
Confidence 467777776432 245 454 45566666777777777777655433 5689999999988653
Q ss_pred hccccccCCCCCCCCeeeEEeee--------h-----hcHHHHHHHHhC-CCCeEEE
Q psy7344 179 MVHFVIAEPHCDGNDINIGCPQM--------V-----AKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 179 ~~~~~i~~~~~~~~~~pvsvK~r--------~-----~~~~~~~~~l~~-G~~~iti 221 (240)
+. +-+++-.+ + .+..++++.+++ |+..+.+
T Consensus 124 ~~-------------ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~ 167 (234)
T PRK13587 124 GR-------------IYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIY 167 (234)
T ss_pred CC-------------EEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEE
Confidence 22 22222222 1 135899999999 9988655
No 414
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=53.14 E-value=79 Score=28.68 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 125 DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 125 d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
+.++..+.++.+.+ |++.||++.|.-..-.. -.+|.....+++.++++.+.++
T Consensus 22 ~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s-~~~G~~~~~~~e~i~~~~~~~~ 75 (333)
T TIGR03217 22 TIEQVRAIAAALDEAGVDAIEVTHGDGLGGSS-FNYGFSAHTDLEYIEAAADVVK 75 (333)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCcc-ccCCCCCCChHHHHHHHHHhCC
Confidence 67778888888866 89999997552211000 1123334578888888887654
No 415
>PRK08227 autoinducer 2 aldolase; Validated
Probab=52.83 E-value=55 Score=28.81 Aligned_cols=82 Identities=10% Similarity=-0.042 Sum_probs=47.7
Q ss_pred CCceeEEe-ecC----CHHHHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCC
Q psy7344 114 MCGHSLMF-CGN----DSKNLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEP 187 (240)
Q Consensus 114 ~~pvivqi-~g~----d~~~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~ 187 (240)
..|+++-. .|. +++.+.-+++... .|+|.|-++.- . +.+++++++
T Consensus 140 G~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~-----------------~-~~f~~vv~a----------- 190 (264)
T PRK08227 140 GMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTYYV-----------------E-EGFERITAG----------- 190 (264)
T ss_pred CCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecCCC-----------------H-HHHHHHHHc-----------
Confidence 45766522 232 2333334555543 37788766542 1 456667763
Q ss_pred CCCCCCeeeEEeee----hhcHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 188 HCDGNDINIGCPQM----VAKRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 188 ~~~~~~~pvsvK~r----~~~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
..+||.+=.- .+++.+..+...+ |+.++++ ||.-.|+
T Consensus 191 ----~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~-GRNIfQ~ 232 (264)
T PRK08227 191 ----CPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDM-GRNIFQS 232 (264)
T ss_pred ----CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeee-chhhhcc
Confidence 3446554333 3345556665667 9999999 9999997
No 416
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=52.45 E-value=23 Score=32.23 Aligned_cols=135 Identities=13% Similarity=0.073 Sum_probs=68.3
Q ss_pred CCcccCCCchhHHHHHHHhhcccCCCceeeccccc--ccCCCcccc--ccCchhhhhhhhcccceee-----eCChhhHH
Q psy7344 34 YGAYLQDDWPLLTELVVHFSWVSKNGPLFMGPLFI--AEPHCDGID--INIGCPQMVAKRGHYGAYL-----QDDWPLLT 104 (240)
Q Consensus 34 ~G~~l~~~~~l~~~iv~ql~~~~~~~p~~vk~~~~--lap~~~~~d--l~~gC~~~i~~~g~~ga~l-----~~d~eli~ 104 (240)
-||+.|++.+|+. ++. ..+.|+.+|.-.. +..+....+ ...|.++.+..|.++..|- ..|...+.
T Consensus 182 IgAr~~~N~~LL~----~va--~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~ 255 (335)
T PRK08673 182 IGARNMQNFDLLK----EVG--KTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVP 255 (335)
T ss_pred ECcccccCHHHHH----HHH--cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHH
Confidence 5688999999954 555 4678998874322 122222121 1445444333332233331 22333333
Q ss_pred HhhhcccCCCCceeEEee--cCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 105 ELGFKTRSHMCGHSLMFC--GNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 105 ~i~~~~~~~~~pvivqi~--g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
.++... ..|+++--. ++.-+....+++.. ..|+||+.|....--..+. .-|. -.-+|+.++++++.++..
T Consensus 256 ~lk~~~---~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~al--sD~~-~sl~p~e~~~lv~~i~~i 328 (335)
T PRK08673 256 VIKKLT---HLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKAL--SDGP-QSLTPEEFEELMKKLRAI 328 (335)
T ss_pred HHHHhc---CCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCCcccCC--Ccch-hcCCHHHHHHHHHHHHHH
Confidence 333221 357655321 12222222334433 4589988877762222222 1222 246899999999988764
No 417
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=52.29 E-value=1.1e+02 Score=25.73 Aligned_cols=72 Identities=7% Similarity=-0.083 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehh
Q psy7344 125 DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVA 203 (240)
Q Consensus 125 d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~ 203 (240)
++++....+.+.+. |++.|=|-.+ .|+....+++.++++.+. .++|+.+=..+.
T Consensus 132 ~~e~~~~~a~aa~~~G~~~i~Le~~----------sGa~~~v~~e~i~~Vk~~---------------~~~Pv~vGGGIr 186 (205)
T TIGR01769 132 KPEIAAAYCLAAKYFGMKWVYLEAG----------SGASYPVNPETISLVKKA---------------SGIPLIVGGGIR 186 (205)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcC----------CCCCCCCCHHHHHHHHHh---------------hCCCEEEeCCCC
Confidence 45665666666654 5565554221 233334678877777664 456888877777
Q ss_pred cHHHHHHHHhCCCCeEEE
Q psy7344 204 KRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 204 ~~~~~~~~l~~G~~~iti 221 (240)
+..+..+++..|+|.+.+
T Consensus 187 s~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 187 SPEIAYEIVLAGADAIVT 204 (205)
T ss_pred CHHHHHHHHHcCCCEEEe
Confidence 766666555559999876
No 418
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=51.83 E-value=1.4e+02 Score=25.21 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=29.0
Q ss_pred CceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIG 148 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~g 148 (240)
.+++..|++.++++..+.++.+.+ |+..|||.+-
T Consensus 4 ~~vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~ 38 (201)
T PRK06015 4 QPVIPVLLIDDVEHAVPLARALAAGGLPAIEITLR 38 (201)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 578888899999999999998865 7899998765
No 419
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=51.46 E-value=48 Score=31.00 Aligned_cols=72 Identities=13% Similarity=0.177 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHc-c---CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEee
Q psy7344 125 DSKNLTEAAKLAE-P---HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQ 200 (240)
Q Consensus 125 d~~~~~~aa~~le-~---~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~ 200 (240)
+..++.+..+.+. . ..|.|.| ||||- ..+.+.++.+.++..- ...++++++-+
T Consensus 271 ~~~dl~~~~~~l~~~~~~~~D~V~l--GcPH~-------------S~~El~~ia~ll~gr~--------~~~~~~~~i~t 327 (400)
T PF04412_consen 271 TDADLEEVYEELNTAGDEKVDLVAL--GCPHL-------------SLEELREIAELLEGRK--------VHPNVPLWITT 327 (400)
T ss_pred CHHHHHHHHHHhccCCCCCCCEEEE--CCCCC-------------CHHHHHHHHHHHhCCC--------CCCCceEEEEC
Confidence 5566666666662 2 2566665 99986 4456666666665530 01456777766
Q ss_pred e---hhcHHH--HHHHHhC-CCCeE
Q psy7344 201 M---VAKRGH--YGAYLQD-DWPLL 219 (240)
Q Consensus 201 r---~~~~~~--~~~~l~~-G~~~i 219 (240)
. .....+ +.+.+++ |+..+
T Consensus 328 ~~~v~~~a~~~G~~~~le~~G~~iv 352 (400)
T PF04412_consen 328 SRAVYELAERMGYVERLEKAGVQIV 352 (400)
T ss_pred CHHHHHHHHhCCHHHHHHHcCCEEE
Confidence 6 234455 8888999 98655
No 420
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=50.88 E-value=1.3e+02 Score=25.71 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=30.8
Q ss_pred CceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCch
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQ 151 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~ 151 (240)
.|++..|++.++++....++.+-+ |.+.|||-+--|.
T Consensus 13 ~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~ 50 (211)
T COG0800 13 QPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTPA 50 (211)
T ss_pred CCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCC
Confidence 578889999999999999998855 7899998766443
No 421
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=50.79 E-value=58 Score=28.99 Aligned_cols=74 Identities=15% Similarity=0.078 Sum_probs=42.8
Q ss_pred HHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHH
Q psy7344 129 LTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGH 207 (240)
Q Consensus 129 ~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~ 207 (240)
..++.+.+++ ++|.+-+..| +.||-|-..---|++++++|-+. +++|+..-..-....+
T Consensus 157 peea~~Fv~~TgvD~LAvaiG-----t~HG~y~~~p~Ld~~~L~~I~~~---------------~~vPLVLHGgSG~~~e 216 (284)
T PRK09195 157 PAQAREFVEATGIDSLAVAIG-----TAHGMYKGEPKLDFDRLENIRQW---------------VNIPLVLHGASGLPTK 216 (284)
T ss_pred HHHHHHHHHHHCcCEEeeccC-----ccccccCCCCcCCHHHHHHHHHH---------------hCCCeEEecCCCCCHH
Confidence 4456666654 9999999999 34554432223478888777664 3456654444222223
Q ss_pred HHHHHhC-CCCeEEEe
Q psy7344 208 YGAYLQD-DWPLLTEL 222 (240)
Q Consensus 208 ~~~~l~~-G~~~itih 222 (240)
-.+.+.+ |+.-|.+.
T Consensus 217 ~~~~ai~~Gi~KiNi~ 232 (284)
T PRK09195 217 DIQQTIKLGICKVNVA 232 (284)
T ss_pred HHHHHHHcCCeEEEeC
Confidence 3444444 77777763
No 422
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=50.50 E-value=32 Score=31.94 Aligned_cols=36 Identities=3% Similarity=-0.247 Sum_probs=26.1
Q ss_pred CCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 192 NDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 192 ~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
.+.||.+|.-. +.+-++.+.+ |+|+|.+-+.-..|.
T Consensus 244 ~~~pvivKgV~--s~~dA~~a~~~Gvd~I~Vs~hGGr~~ 280 (381)
T PRK11197 244 WDGPMVIKGIL--DPEDARDAVRFGADGIVVSNHGGRQL 280 (381)
T ss_pred CCCCEEEEecC--CHHHHHHHHhCCCCEEEECCCCCCCC
Confidence 67899999873 3456677777 999998866544443
No 423
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=50.33 E-value=32 Score=28.05 Aligned_cols=72 Identities=14% Similarity=0.051 Sum_probs=41.4
Q ss_pred EEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEE
Q psy7344 119 LMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGC 198 (240)
Q Consensus 119 vqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsv 198 (240)
+.+-..+.+ ++.+.++.++|.|++--. +|+.++++++.++..- ++ ..+-+|.
T Consensus 83 I~VEv~~~e---e~~ea~~~g~d~I~lD~~-----------------~~~~~~~~v~~l~~~~-----~~---v~ie~SG 134 (169)
T PF01729_consen 83 IEVEVENLE---EAEEALEAGADIIMLDNM-----------------SPEDLKEAVEELRELN-----PR---VKIEASG 134 (169)
T ss_dssp EEEEESSHH---HHHHHHHTT-SEEEEES------------------CHHHHHHHHHHHHHHT-----TT---SEEEEES
T ss_pred EEEEcCCHH---HHHHHHHhCCCEEEecCc-----------------CHHHHHHHHHHHhhcC-----Cc---EEEEEEC
Confidence 344334544 455556678999998443 7889999999776641 10 2233333
Q ss_pred eeehhcHHHHHHHHhC-CCCeEEEe
Q psy7344 199 PQMVAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 199 K~r~~~~~~~~~~l~~-G~~~itih 222 (240)
-+..++..+|+ + |+|.|.+-
T Consensus 135 GI~~~ni~~ya----~~gvD~isvg 155 (169)
T PF01729_consen 135 GITLENIAEYA----KTGVDVISVG 155 (169)
T ss_dssp SSSTTTHHHHH----HTT-SEEEEC
T ss_pred CCCHHHHHHHH----hcCCCEEEcC
Confidence 33355555554 5 99999883
No 424
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=50.22 E-value=1.2e+02 Score=26.33 Aligned_cols=105 Identities=16% Similarity=0.013 Sum_probs=62.3
Q ss_pred eeeeCChhhHHHhhhcccCCCCceeEEee--c---------C-CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhccccc
Q psy7344 94 AYLQDDWPLLTELGFKTRSHMCGHSLMFC--G---------N-DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYG 160 (240)
Q Consensus 94 a~l~~d~eli~~i~~~~~~~~~pvivqi~--g---------~-d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G 160 (240)
+.-..+|+++.++..... . -+++.|- . . ...++.++++.+++ ++.+|=+ .-+.+.|+-
T Consensus 105 t~av~~p~~v~~~~~~~g-~--rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~------TdI~~DGtl 175 (241)
T COG0106 105 TAAVKNPDLVKELCEEYG-D--RIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILY------TDISRDGTL 175 (241)
T ss_pred cceecCHHHHHHHHHHcC-C--cEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEE------Eeccccccc
Confidence 333567999998866543 1 1333331 1 1 22357778888876 5544322 111233332
Q ss_pred ccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 161 AYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 161 ~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+ ..|++.+.++.+++ ++||.+-.-+.+..++-..... |++.+++ ||-
T Consensus 176 ~--G~n~~l~~~l~~~~---------------~ipviaSGGv~s~~Di~~l~~~~G~~GvIv-G~A 223 (241)
T COG0106 176 S--GPNVDLVKELAEAV---------------DIPVIASGGVSSLDDIKALKELSGVEGVIV-GRA 223 (241)
T ss_pred C--CCCHHHHHHHHHHh---------------CcCEEEecCcCCHHHHHHHHhcCCCcEEEE-ehH
Confidence 2 57999999999874 4566666666666666665555 8999988 664
No 425
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=50.21 E-value=61 Score=29.45 Aligned_cols=110 Identities=10% Similarity=-0.011 Sum_probs=63.2
Q ss_pred ceeeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHcc-CCCE--EEecCCCchhhhhcccccccc-cCCHH
Q psy7344 93 GAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEP-HCDG--IDINIGCPQMVAKRGHYGAYL-QDDWP 168 (240)
Q Consensus 93 ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~-~~d~--Idin~gCP~~~~~~~g~G~~l-~~~p~ 168 (240)
+++-..++++++.+..+ ..|++++.+..+.+++..+++.+.. |... |-| +.|... |-+.. -.|..
T Consensus 116 aS~~~~n~pLL~~~A~~----gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~l-lhC~s~------YP~~~~~~nL~ 184 (329)
T TIGR03569 116 PSGEITNAPLLKKIARF----GKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITL-LHCTTE------YPAPFEDVNLN 184 (329)
T ss_pred CcccccCHHHHHHHHhc----CCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEE-EEECCC------CCCCcccCCHH
Confidence 34445568888887543 5799999988999999999999975 5431 333 335331 11110 12333
Q ss_pred HHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 169 LLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 169 ~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
.+ ..+++. ...||..- .-..-...+.+... ||+.|=-|----...
T Consensus 185 ~I----~~Lk~~-----------f~~pVG~S-dHt~G~~~~~aAvalGA~iIEkH~tldk~~ 230 (329)
T TIGR03569 185 AM----DTLKEA-----------FDLPVGYS-DHTLGIEAPIAAVALGATVIEKHFTLDKNL 230 (329)
T ss_pred HH----HHHHHH-----------hCCCEEEC-CCCccHHHHHHHHHcCCCEEEeCCChhhcC
Confidence 33 344443 34455541 11112345555667 999887776554443
No 426
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=50.08 E-value=1.2e+02 Score=26.10 Aligned_cols=84 Identities=12% Similarity=-0.013 Sum_probs=48.1
Q ss_pred CCCceeEEee-------cCCHHHHHHHHHHH-ccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccc
Q psy7344 113 HMCGHSLMFC-------GNDSKNLTEAAKLA-EPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVI 184 (240)
Q Consensus 113 ~~~pvivqi~-------g~d~~~~~~aa~~l-e~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i 184 (240)
...|+++.+. ..+.+....+++.. +.|+|.|-+... .+++.++++++.
T Consensus 135 ~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~----------------~~~~~l~~~~~~-------- 190 (258)
T TIGR01949 135 WGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPYT----------------GDIDSFRDVVKG-------- 190 (258)
T ss_pred cCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccCC----------------CCHHHHHHHHHh--------
Confidence 3567776432 12445555555555 458898876311 267777777764
Q ss_pred cCCCCCCCCeeeEEeeehh--c---HHHHHHHHhC-CCCeEEEecccccc
Q psy7344 185 AEPHCDGNDINIGCPQMVA--K---RGHYGAYLQD-DWPLLTELGKMAML 228 (240)
Q Consensus 185 ~~~~~~~~~~pvsvK~r~~--~---~~~~~~~l~~-G~~~itih~R~~~~ 228 (240)
..+||.+=.-+. + +.+.++.+.+ |++++++ +|.-.|
T Consensus 191 -------~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~-g~~i~~ 232 (258)
T TIGR01949 191 -------CPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAV-GRNIFQ 232 (258)
T ss_pred -------CCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEeh-hhHhhc
Confidence 345663312132 3 3445555567 9999887 776554
No 427
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.99 E-value=50 Score=29.37 Aligned_cols=67 Identities=9% Similarity=-0.117 Sum_probs=40.2
Q ss_pred HHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHH
Q psy7344 128 NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGH 207 (240)
Q Consensus 128 ~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~ 207 (240)
++.++.+.++.++|.|++--- +|+.+++.++.++.. ..+-+|.-+..++
T Consensus 203 tleea~ea~~~gaDiI~LDn~-----------------s~e~l~~av~~~~~~-----------~~leaSGGI~~~n--- 251 (281)
T PRK06106 203 TLDQLEEALELGVDAVLLDNM-----------------TPDTLREAVAIVAGR-----------AITEASGRITPET--- 251 (281)
T ss_pred CHHHHHHHHHcCCCEEEeCCC-----------------CHHHHHHHHHHhCCC-----------ceEEEECCCCHHH---
Confidence 444555666778899988333 678888888865443 1122333333333
Q ss_pred HHHHHhC-CCCeEEEecccc
Q psy7344 208 YGAYLQD-DWPLLTELGKMA 226 (240)
Q Consensus 208 ~~~~l~~-G~~~itih~R~~ 226 (240)
++.+.+ |+|.|++-.=|.
T Consensus 252 -i~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 252 -APAIAASGVDLISVGWLTH 270 (281)
T ss_pred -HHHHHhcCCCEEEeChhhc
Confidence 444456 999999955443
No 428
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=49.71 E-value=73 Score=27.82 Aligned_cols=72 Identities=14% Similarity=0.025 Sum_probs=45.4
Q ss_pred HHHHcc-CCCEEEe-cCC-CchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHH
Q psy7344 133 AKLAEP-HCDGIDI-NIG-CPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYG 209 (240)
Q Consensus 133 a~~le~-~~d~Idi-n~g-CP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~ 209 (240)
|+.+++ |+|+|.+ |.| -|... -.+|+.+..+...+++... ...+||-+++-..+.+...
T Consensus 40 A~~leegG~DavivEN~gD~Pf~k----------~v~~~tvaaMa~iv~~v~r--------~v~iPvGvNVLrNd~vaA~ 101 (263)
T COG0434 40 AAALEEGGVDAVIVENYGDAPFLK----------DVGPETVAAMAVIVREVVR--------EVSIPVGVNVLRNDAVAAL 101 (263)
T ss_pred HHHHHhCCCcEEEEeccCCCCCCC----------CCChHHHHHHHHHHHHHHH--------hccccceeeeeccccHHHH
Confidence 455555 7999986 444 23322 1355555444433333211 1678999999888877777
Q ss_pred HHHhC-CCCeEEEe
Q psy7344 210 AYLQD-DWPLLTEL 222 (240)
Q Consensus 210 ~~l~~-G~~~itih 222 (240)
..... |+++|-+-
T Consensus 102 ~IA~a~gA~FIRVN 115 (263)
T COG0434 102 AIAYAVGADFIRVN 115 (263)
T ss_pred HHHHhcCCCEEEEE
Confidence 77788 99998763
No 429
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=49.55 E-value=33 Score=31.69 Aligned_cols=98 Identities=8% Similarity=0.101 Sum_probs=60.1
Q ss_pred CceeEEee-cCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhh----cccc---------------------------c-
Q psy7344 115 CGHSLMFC-GNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAK----RGHY---------------------------G- 160 (240)
Q Consensus 115 ~pvivqi~-g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~----~~g~---------------------------G- 160 (240)
.|...|+. ..|.+...++.++.+. |+.++-+..=.|..-.. +.++ .
T Consensus 122 ~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (367)
T PLN02493 122 GIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLAS 201 (367)
T ss_pred CCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHHH
Confidence 46788885 4577777788887765 77776664444432000 0000 0
Q ss_pred ---ccc--cCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 161 ---AYL--QDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 161 ---~~l--~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
..+ .-+|+.++ ++++. +++||.+|.-. ..+-++.+.+ |+|+|.|-+.-..|.
T Consensus 202 ~~~~~~~~~~tW~di~----wlr~~-----------~~~PiivKgV~--~~~dA~~a~~~Gvd~I~VsnhGGrql 259 (367)
T PLN02493 202 YVAGQIDRTLSWKDVQ----WLQTI-----------TKLPILVKGVL--TGEDARIAIQAGAAGIIVSNHGARQL 259 (367)
T ss_pred HHhhcCCCCCCHHHHH----HHHhc-----------cCCCEEeecCC--CHHHHHHHHHcCCCEEEECCCCCCCC
Confidence 000 12455544 44444 78899999984 3566777777 999999988766554
No 430
>PLN02489 homocysteine S-methyltransferase
Probab=49.49 E-value=53 Score=29.80 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=24.0
Q ss_pred CCceeEEeec------CCHHHHHHHHHHHcc--CCCEEEecCC
Q psy7344 114 MCGHSLMFCG------NDSKNLTEAAKLAEP--HCDGIDINIG 148 (240)
Q Consensus 114 ~~pvivqi~g------~d~~~~~~aa~~le~--~~d~Idin~g 148 (240)
+.|+++++.- .+...+.++++.+.+ ++++|-+||.
T Consensus 208 ~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~~~~~~iGiNC~ 250 (335)
T PLN02489 208 KIPAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAVGINCT 250 (335)
T ss_pred CCeEEEEEEeCCCCccCCCCcHHHHHHHHHhcCCceEEEecCC
Confidence 3688888742 244566777777754 4789999986
No 431
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=49.46 E-value=69 Score=28.51 Aligned_cols=73 Identities=12% Similarity=0.020 Sum_probs=42.5
Q ss_pred HHHHHHHHcc-CCCEEEecCCCchhhhhccccccccc-CCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHH
Q psy7344 129 LTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQ-DDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRG 206 (240)
Q Consensus 129 ~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~-~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~ 206 (240)
..++.+.+++ ++|.+-+..| +.||-|-..-- -|++++++|-+. +++|+..-..-....
T Consensus 160 peea~~Fv~~TgvD~LAvaiG-----t~HG~y~~~p~~Ld~~~L~~I~~~---------------v~vPLVlHGgSG~~~ 219 (288)
T TIGR00167 160 PEEAKEFVKLTGVDSLAAAIG-----NVHGVYKGEPKGLDFERLEEIQKY---------------VNLPLVLHGGSGIPD 219 (288)
T ss_pred HHHHHHHHhccCCcEEeeccC-----ccccccCCCCCccCHHHHHHHHHH---------------hCCCEEEeCCCCCCH
Confidence 3566666765 8999999999 34555532111 388888888665 344555544422222
Q ss_pred HHHHHHhC-CCCeEEE
Q psy7344 207 HYGAYLQD-DWPLLTE 221 (240)
Q Consensus 207 ~~~~~l~~-G~~~iti 221 (240)
+-.+.+.. |+.-|.+
T Consensus 220 e~~~~ai~~Gi~KiNi 235 (288)
T TIGR00167 220 EEIKKAISLGVVKVNI 235 (288)
T ss_pred HHHHHHHHcCCeEEEc
Confidence 33333444 6666665
No 432
>KOG3111|consensus
Probab=48.86 E-value=65 Score=27.29 Aligned_cols=84 Identities=15% Similarity=0.177 Sum_probs=50.2
Q ss_pred EEeecCCHHHHHH-HHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee--
Q psy7344 119 LMFCGNDSKNLTE-AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN-- 195 (240)
Q Consensus 119 vqi~g~d~~~~~~-aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p-- 195 (240)
.+|-..|-..+.+ +.+++..|+|.+-+-. +.+++ ..|-..=.-+++++++. +..+
T Consensus 9 PSIL~~dfanL~~e~~~~l~~GadwlHlDV-------MDg~F----VpNiT~G~pvV~slR~~-----------~~~~~f 66 (224)
T KOG3111|consen 9 PSILSSDFANLAAECKKMLDAGADWLHLDV-------MDGHF----VPNITFGPPVVESLRKH-----------TGADPF 66 (224)
T ss_pred hhhhccchHHHHHHHHHHHHcCCCeEEEee-------ecccc----cCCcccchHHHHHHHhc-----------cCCCcc
Confidence 3555567666655 4445566888654321 11211 12222222366666665 3333
Q ss_pred eEEeeehhcHHHHHHHHhC-CCCeEEEecc
Q psy7344 196 IGCPQMVAKRGHYGAYLQD-DWPLLTELGK 224 (240)
Q Consensus 196 vsvK~r~~~~~~~~~~l~~-G~~~itih~R 224 (240)
+-+-+.+.+.+++..-+.. |++.+|+|--
T Consensus 67 fD~HmMV~~Peq~V~~~a~agas~~tfH~E 96 (224)
T KOG3111|consen 67 FDVHMMVENPEQWVDQMAKAGASLFTFHYE 96 (224)
T ss_pred eeEEEeecCHHHHHHHHHhcCcceEEEEEe
Confidence 5577778889999999888 9999999964
No 433
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=48.63 E-value=59 Score=28.89 Aligned_cols=104 Identities=10% Similarity=-0.122 Sum_probs=55.2
Q ss_pred CChhhHHHhhhcccCCCCceeEEeec--CCHHHHHHHHHHHcc-CC-CEEEecCCCchhhhhcccccccccCCHHHHHHH
Q psy7344 98 DDWPLLTELGFKTRSHMCGHSLMFCG--NDSKNLTEAAKLAEP-HC-DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNL 173 (240)
Q Consensus 98 ~d~eli~~i~~~~~~~~~pvivqi~g--~d~~~~~~aa~~le~-~~-d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~i 173 (240)
.+.+++..+-. ..+||.++ .| -.++++.-+++.+.. |- +.+-+-+|.. -+|.- +.-|...+-.
T Consensus 118 rntdLL~a~~~----t~kpV~lK-rGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~------fgy~~-~~~D~~~ip~- 184 (281)
T PRK12457 118 RQTDLVVAIAK----TGKPVNIK-KPQFMSPTQMKHVVSKCREAGNDRVILCERGSS------FGYDN-LVVDMLGFRQ- 184 (281)
T ss_pred chHHHHHHHhc----cCCeEEec-CCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCC------CCCCC-cccchHHHHH-
Confidence 34455544432 34677666 34 578999999999865 54 4455667742 13442 3444444432
Q ss_pred HHHhhhccccccCCCCCCCCeeeEEeee----------hhcHHHHHHHHhC-CCCeEEE
Q psy7344 174 VYSPNMVHFVIAEPHCDGNDINIGCPQM----------VAKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 174 v~~~~~~~~~i~~~~~~~~~~pvsvK~r----------~~~~~~~~~~l~~-G~~~iti 221 (240)
++......||| .+..-+|... .+-...++++... |+|++.+
T Consensus 185 mk~~~t~lPVi-------~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~i 236 (281)
T PRK12457 185 MKRTTGDLPVI-------FDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFL 236 (281)
T ss_pred HHhhCCCCCEE-------EeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 22221233444 1111121111 1235678888888 9999776
No 434
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=48.57 E-value=68 Score=28.57 Aligned_cols=75 Identities=11% Similarity=0.031 Sum_probs=43.2
Q ss_pred HHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHH
Q psy7344 128 NLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRG 206 (240)
Q Consensus 128 ~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~ 206 (240)
+..++.+.+++ ++|.+-+..| +.||-|...---|++.+++|.+. +++|+..-..-....
T Consensus 157 ~peea~~Fv~~TgvD~LAvaiG-----t~HG~Y~~~p~Ld~~~L~~I~~~---------------~~vPLVLHGgSG~~~ 216 (286)
T PRK08610 157 DPKECQELVEKTGIDALAPALG-----SVHGPYKGEPKLGFKEMEEIGLS---------------TGLPLVLHGGTGIPT 216 (286)
T ss_pred CHHHHHHHHHHHCCCEEEeecc-----ccccccCCCCCCCHHHHHHHHHH---------------HCCCEEEeCCCCCCH
Confidence 34556666655 9999999999 34544422112378888777654 345665544422222
Q ss_pred HHHHHHhC-CCCeEEEe
Q psy7344 207 HYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 207 ~~~~~l~~-G~~~itih 222 (240)
+-.+.+.. |+.-|.+.
T Consensus 217 e~~~~ai~~GI~KiNi~ 233 (286)
T PRK08610 217 KDIQKAIPFGTAKINVN 233 (286)
T ss_pred HHHHHHHHCCCeEEEec
Confidence 33444445 77776663
No 435
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=48.49 E-value=73 Score=28.36 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=43.7
Q ss_pred HHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHH
Q psy7344 128 NLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRG 206 (240)
Q Consensus 128 ~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~ 206 (240)
+..++.+.+++ ++|.+-+..| +.||-|-..---|++++++|.+. +++|+..-..-....
T Consensus 156 ~peea~~Fv~~TgvD~LAvaiG-----t~HG~Y~~~p~Ldfd~l~~I~~~---------------~~vPLVLHGgSG~~~ 215 (286)
T PRK12738 156 DPQEAKRFVELTGVDSLAVAIG-----TAHGLYSKTPKIDFQRLAEIREV---------------VDVPLVLHGASDVPD 215 (286)
T ss_pred CHHHHHHHHHHhCCCEEEeccC-----cccCCCCCCCcCCHHHHHHHHHH---------------hCCCEEEeCCCCCCH
Confidence 34566666654 9999999999 34554532112367777777654 455665544422223
Q ss_pred HHHHHHhC-CCCeEEEe
Q psy7344 207 HYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 207 ~~~~~l~~-G~~~itih 222 (240)
+-.+.+.+ |+.-|.+.
T Consensus 216 e~~~kai~~GI~KiNi~ 232 (286)
T PRK12738 216 EFVRRTIELGVTKVNVA 232 (286)
T ss_pred HHHHHHHHcCCeEEEeC
Confidence 33444455 77777763
No 436
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=48.26 E-value=40 Score=32.32 Aligned_cols=50 Identities=12% Similarity=-0.057 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHH-HhC-CCCeEEEecc
Q psy7344 165 DDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAY-LQD-DWPLLTELGK 224 (240)
Q Consensus 165 ~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~-l~~-G~~~itih~R 224 (240)
..+|-+++++..+++.. ..-+|+||+--...++.... ..+ ++|.|+|-|=
T Consensus 285 ysieDLaqlI~dLk~~~----------~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~ 336 (485)
T COG0069 285 YSIEDLAQLIKDLKEAN----------PWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGA 336 (485)
T ss_pred cCHHHHHHHHHHHHhcC----------CCCeEEEEEecccchHHHHhhhhhccCCEEEEcCC
Confidence 56888889999999871 23569999996555555555 666 9999999664
No 437
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=48.26 E-value=67 Score=29.39 Aligned_cols=29 Identities=7% Similarity=-0.188 Sum_probs=21.2
Q ss_pred eeeeCChhhHHHhhhcccCCCCceeEEee
Q psy7344 94 AYLQDDWPLLTELGFKTRSHMCGHSLMFC 122 (240)
Q Consensus 94 a~l~~d~eli~~i~~~~~~~~~pvivqi~ 122 (240)
+|-..+.+.+..++.+......|+|+|+.
T Consensus 17 AfN~~n~e~~~Avi~aAee~~sPvIlq~s 45 (340)
T cd00453 17 AVNCVGTDSINAVLETAAKVKAPVIVQFS 45 (340)
T ss_pred EEEeCCHHHHHHHHHHHHHhCCCEEEEcC
Confidence 45567788888877665445689999974
No 438
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=48.04 E-value=63 Score=31.84 Aligned_cols=49 Identities=14% Similarity=0.004 Sum_probs=33.6
Q ss_pred CceeEEeec------CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh
Q psy7344 115 CGHSLMFCG------NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 115 ~pvivqi~g------~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~ 179 (240)
.|+++++.- .|...+.+++..++. ++++|.+||+- .|+.+..+++.+..
T Consensus 166 ~p~~~Sf~~~~~g~l~~G~~~~~~~~~~~~~~~~avGiNC~~----------------~p~~~~~~l~~l~~ 221 (612)
T PRK08645 166 LPIIAQVAFHEDGVTQNGTSLEEALKELVAAGADVVGLNCGL----------------GPYHMLEALERIPI 221 (612)
T ss_pred CcEEEEEEECCCCeeCCCCCHHHHHHHHHhCCCCEEEecCCC----------------CHHHHHHHHHHHHh
Confidence 688888742 255667788888755 68999999982 35555566655544
No 439
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=47.54 E-value=62 Score=31.94 Aligned_cols=70 Identities=21% Similarity=0.327 Sum_probs=45.0
Q ss_pred eeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHH
Q psy7344 96 LQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVY 175 (240)
Q Consensus 96 l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~ 175 (240)
...||+.+..+.. ..|+++- +|=+++...++.+.....+.+||++.|=- . .. | .+|+++++++++
T Consensus 146 ~~fdw~~~~~~~~-----~~p~iLA-GGL~peNV~~ai~~~~p~~~gVDvsSGvE---~-~p--G---~KD~~ki~~fi~ 210 (610)
T PRK13803 146 KSFDWEKFYNYNF-----KFPFFLS-GGLSPTNFDRIINLTHPQILGIDVSSGFE---D-SP--G---NKKLTLLKSFIT 210 (610)
T ss_pred CccChHHhhhccc-----CCcEEEE-eCCCHHHHHHHHhhhCCCceEEEccCccc---C-CC--C---CcCHHHHHHHHH
Confidence 3457887754321 2465432 34488888877775544344999998821 0 11 1 489999999999
Q ss_pred Hhhhc
Q psy7344 176 SPNMV 180 (240)
Q Consensus 176 ~~~~~ 180 (240)
.++..
T Consensus 211 ~~k~~ 215 (610)
T PRK13803 211 NVKKK 215 (610)
T ss_pred HHHHh
Confidence 99874
No 440
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=47.50 E-value=2.1e+02 Score=25.93 Aligned_cols=13 Identities=8% Similarity=0.406 Sum_probs=7.1
Q ss_pred ccCCCEEEecCCC
Q psy7344 137 EPHCDGIDINIGC 149 (240)
Q Consensus 137 e~~~d~Idin~gC 149 (240)
+.++|.|-+...|
T Consensus 98 ~~gvd~iri~~~~ 110 (333)
T TIGR03217 98 DAGARTVRVATHC 110 (333)
T ss_pred HCCCCEEEEEecc
Confidence 3456666655543
No 441
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=47.29 E-value=1.3e+02 Score=27.65 Aligned_cols=37 Identities=5% Similarity=-0.155 Sum_probs=25.2
Q ss_pred CceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCch
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQ 151 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~ 151 (240)
.|...|+.-.|.+...++.++.+. |+.+|.+..=.|.
T Consensus 116 ~~~wfQLY~~~r~~~~~ll~RA~~aG~~alvlTvD~pv 153 (361)
T cd04736 116 GDLWFQLYVVHRELAELLVKRALAAGYTTLVLTTDVAV 153 (361)
T ss_pred CCeEEEEEecCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 468888876676666677777765 7777776655444
No 442
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=47.13 E-value=76 Score=28.22 Aligned_cols=74 Identities=18% Similarity=0.087 Sum_probs=42.4
Q ss_pred HHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHH
Q psy7344 129 LTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGH 207 (240)
Q Consensus 129 ~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~ 207 (240)
..++.+.+++ ++|.+-+..| +.||.|-..---|++++++|-+. .++|+..-..-....+
T Consensus 157 pe~a~~Fv~~TgvD~LAvaiG-----t~HG~y~~~p~Ld~~~L~~i~~~---------------~~vPLVlHGgSG~~~e 216 (284)
T PRK12857 157 PEEARRFVEETGVDALAIAIG-----TAHGPYKGEPKLDFDRLAKIKEL---------------VNIPIVLHGSSGVPDE 216 (284)
T ss_pred HHHHHHHHHHHCCCEEeeccC-----ccccccCCCCcCCHHHHHHHHHH---------------hCCCEEEeCCCCCCHH
Confidence 4456666654 8999999999 34555533222478888777664 3445544333222223
Q ss_pred HHHHHhC-CCCeEEEe
Q psy7344 208 YGAYLQD-DWPLLTEL 222 (240)
Q Consensus 208 ~~~~l~~-G~~~itih 222 (240)
-.+.+.+ |+.-|.+.
T Consensus 217 ~~~~ai~~Gi~KiNi~ 232 (284)
T PRK12857 217 AIRKAISLGVRKVNID 232 (284)
T ss_pred HHHHHHHcCCeEEEeC
Confidence 3444444 77776663
No 443
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.06 E-value=59 Score=29.13 Aligned_cols=63 Identities=3% Similarity=-0.088 Sum_probs=38.5
Q ss_pred HHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHH
Q psy7344 128 NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGH 207 (240)
Q Consensus 128 ~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~ 207 (240)
++.++.+.++.|+|.|++--- .|+.+++.++.++.. ..+-.|.-+.. +
T Consensus 214 tleea~eA~~aGaDiImLDnm-----------------spe~l~~av~~~~~~-----------~~lEaSGGIt~----~ 261 (294)
T PRK06978 214 TLAQLETALAHGAQSVLLDNF-----------------TLDMMREAVRVTAGR-----------AVLEVSGGVNF----D 261 (294)
T ss_pred CHHHHHHHHHcCCCEEEECCC-----------------CHHHHHHHHHhhcCC-----------eEEEEECCCCH----H
Confidence 344555666678899988433 678888888765432 22233333333 3
Q ss_pred HHHHHhC-CCCeEEEe
Q psy7344 208 YGAYLQD-DWPLLTEL 222 (240)
Q Consensus 208 ~~~~l~~-G~~~itih 222 (240)
-++.+.. |+|.|++-
T Consensus 262 ni~~yA~tGVD~IS~g 277 (294)
T PRK06978 262 TVRAFAETGVDRISIG 277 (294)
T ss_pred HHHHHHhcCCCEEEeC
Confidence 4445556 99999983
No 444
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=46.83 E-value=1.8e+02 Score=24.59 Aligned_cols=87 Identities=6% Similarity=-0.128 Sum_probs=51.0
Q ss_pred eeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+.+.+.+.+.++....++.++.++|.|++=.=.- . . ..+.+.+.++.+.++... .++|+
T Consensus 2 i~v~~~~~~~~~~~~~~~~~~~~aD~vElRlD~l-~--------~--~~~~~~~~~~~~~~~~~~----------~~~pi 60 (228)
T TIGR01093 2 IFVPLTAPDLEEALATAEKICKGADIVELRVDLL-K--------D--PSSNNDVDALIEQLSQLR----------PDKPL 60 (228)
T ss_pred EEEEccCCCHHHHHHHHHHhccCCCEEEEEechh-c--------c--cCcHHHHHHHHHHHHHhc----------CCCcE
Confidence 3456667788887777777766899999854420 0 0 124444555555554431 24688
Q ss_pred EEeeeh-----------hcHHHHHHHH-hC-CCCeEEEecc
Q psy7344 197 GCPQMV-----------AKRGHYGAYL-QD-DWPLLTELGK 224 (240)
Q Consensus 197 svK~r~-----------~~~~~~~~~l-~~-G~~~itih~R 224 (240)
.+-+|. +...++.+.+ .. ++++|.|--+
T Consensus 61 I~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~ 101 (228)
T TIGR01093 61 IFTIRTISEGGKFPGNEEEYLEELKRAADSPGPDFVDIELF 101 (228)
T ss_pred EEEECChhhCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence 777772 1223344444 56 7899888543
No 445
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=46.58 E-value=38 Score=26.48 Aligned_cols=49 Identities=16% Similarity=-0.033 Sum_probs=31.9
Q ss_pred HHHHHHcc-CCCEEEecCCCchhhhhc---ccccccccCCHHHHHHHHHHhhhc
Q psy7344 131 EAAKLAEP-HCDGIDINIGCPQMVAKR---GHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 131 ~aa~~le~-~~d~Idin~gCP~~~~~~---~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
+.++.+.+ +++.|.||.+|....+-- -+.-..-+. .+++.+++++..+.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~ 56 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHER 56 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHC
Confidence 34455544 789999999987754421 111122244 78999999998874
No 446
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.31 E-value=62 Score=28.78 Aligned_cols=63 Identities=8% Similarity=-0.076 Sum_probs=39.0
Q ss_pred HHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHH
Q psy7344 128 NLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGH 207 (240)
Q Consensus 128 ~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~ 207 (240)
++.++.+.++.|+|.|++--- +|+.+++.++.++.. ..+-.|.-+..++.
T Consensus 202 slee~~ea~~~gaDiImLDn~-----------------s~e~l~~av~~~~~~-----------~~leaSGgI~~~ni-- 251 (281)
T PRK06543 202 RLDQIEPVLAAGVDTIMLDNF-----------------SLDDLREGVELVDGR-----------AIVEASGNVNLNTV-- 251 (281)
T ss_pred CHHHHHHHHhcCCCEEEECCC-----------------CHHHHHHHHHHhCCC-----------eEEEEECCCCHHHH--
Confidence 344555555678899988433 688888888876543 22334443434443
Q ss_pred HHHHHhC-CCCeEEEe
Q psy7344 208 YGAYLQD-DWPLLTEL 222 (240)
Q Consensus 208 ~~~~l~~-G~~~itih 222 (240)
+.+.. |+|.|++-
T Consensus 252 --~~yA~tGVD~Is~g 265 (281)
T PRK06543 252 --GAIASTGVDVISVG 265 (281)
T ss_pred --HHHHhcCCCEEEeC
Confidence 44456 99999983
No 447
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=46.17 E-value=66 Score=28.22 Aligned_cols=72 Identities=11% Similarity=0.058 Sum_probs=45.9
Q ss_pred HHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee-----
Q psy7344 128 NLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM----- 201 (240)
Q Consensus 128 ~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r----- 201 (240)
...++++...+ |+|.|--.-| ++. -...++.++-+.+.+++. + ....+-+|--
T Consensus 148 ~i~~a~~~a~~aGADFVKTSTG----------f~~-~gAt~edv~lm~~~i~~~----~------~~~~vgIKAsGGIrt 206 (257)
T PRK05283 148 LIRKASEIAIKAGADFIKTSTG----------KVP-VNATLEAARIMLEVIRDM----G------VAKTVGFKPAGGVRT 206 (257)
T ss_pred HHHHHHHHHHHhCCCEEEcCCC----------CCC-CCCCHHHHHHHHHHHHhc----c------cCCCeeEEccCCCCC
Confidence 47778887755 8898877666 111 126888888888776542 0 1123444543
Q ss_pred hhcHHHHHHHHhC--CCCeEE
Q psy7344 202 VAKRGHYGAYLQD--DWPLLT 220 (240)
Q Consensus 202 ~~~~~~~~~~l~~--G~~~it 220 (240)
+++..++..+-++ |.++++
T Consensus 207 ~~~A~~~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 207 AEDAAQYLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHHHHHHHhChhhcC
Confidence 4566777777766 988887
No 448
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=45.95 E-value=72 Score=28.25 Aligned_cols=82 Identities=6% Similarity=-0.064 Sum_probs=0.0
Q ss_pred ceeeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHH
Q psy7344 93 GAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTN 172 (240)
Q Consensus 93 ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~ 172 (240)
++|-..+.+.+..+..+......|+|+|+.-+.... ...+.+..
T Consensus 21 ~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~------------------------------------~~~~~~~~ 64 (281)
T PRK06806 21 GAFSVANMEMVMGAIKAAEELNSPIILQIAEVRLNH------------------------------------SPLHLIGP 64 (281)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhcc------------------------------------CChHHHHH
Q ss_pred HHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEE
Q psy7344 173 LVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 173 iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~iti 221 (240)
++..+.+. .++||.+-+.-....+.++...+ |++.|.+
T Consensus 65 ~~~~~a~~-----------~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~ 103 (281)
T PRK06806 65 LMVAAAKQ-----------AKVPVAVHFDHGMTFEKIKEALEIGFTSVMF 103 (281)
T ss_pred HHHHHHHH-----------CCCCEEEECCCCCCHHHHHHHHHcCCCEEEE
No 449
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.73 E-value=1e+02 Score=27.54 Aligned_cols=67 Identities=10% Similarity=0.030 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcH
Q psy7344 126 SKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKR 205 (240)
Q Consensus 126 ~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~ 205 (240)
.++..++.+.++.|+|.|++.- -.|+.++++++.++... .++|+.+=..++
T Consensus 203 v~tleea~eA~~~GaD~I~LDn-----------------~~~e~l~~av~~~~~~~----------~~i~leAsGGIt-- 253 (288)
T PRK07428 203 TETLEQVQEALEYGADIIMLDN-----------------MPVDLMQQAVQLIRQQN----------PRVKIEASGNIT-- 253 (288)
T ss_pred CCCHHHHHHHHHcCCCEEEECC-----------------CCHHHHHHHHHHHHhcC----------CCeEEEEECCCC--
Confidence 3444556666677899999861 26788888888765421 345665544432
Q ss_pred HHHHHHHhC-CCCeEEE
Q psy7344 206 GHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 206 ~~~~~~l~~-G~~~iti 221 (240)
.+-+..+.. |+|.|.+
T Consensus 254 ~~ni~~ya~tGvD~Isv 270 (288)
T PRK07428 254 LETIRAVAETGVDYISS 270 (288)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 334444456 9999998
No 450
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=45.68 E-value=1.2e+02 Score=26.52 Aligned_cols=94 Identities=16% Similarity=-0.000 Sum_probs=53.1
Q ss_pred eeEEeec--CCHHHHHHHHHHHcc-CCCEEEecCCCchhhh-----hcccccccc--cCCHHHHHHHHHHhhhccccccC
Q psy7344 117 HSLMFCG--NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVA-----KRGHYGAYL--QDDWPLLTNLVYSPNMVHFVIAE 186 (240)
Q Consensus 117 vivqi~g--~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~-----~~~g~G~~l--~~~p~~i~~iv~~~~~~~~~i~~ 186 (240)
++.=+.. .|.+++.++++.+.+ |+|.|||++==..+.+ .+... .+| .-+.+.+-++++.+++..
T Consensus 14 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~-~AL~~G~~~~~~~~~~~~~r~~~----- 87 (258)
T PRK13111 14 LIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASL-RALAAGVTLADVFELVREIREKD----- 87 (258)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHH-HHHHcCCCHHHHHHHHHHHHhcC-----
Confidence 4444433 477788998887755 8999999753211221 11100 011 124555556666666321
Q ss_pred CCCCCCCeeeEEeeehh-----cHHHHHHHHhC-CCCeEEE
Q psy7344 187 PHCDGNDINIGCPQMVA-----KRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 187 ~~~~~~~~pvsvK~r~~-----~~~~~~~~l~~-G~~~iti 221 (240)
.++|+.+=.=++ -..+|.+.+.+ |+|++.+
T Consensus 88 -----~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGvii 123 (258)
T PRK13111 88 -----PTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLII 123 (258)
T ss_pred -----CCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEE
Confidence 456764211122 34678888888 9999887
No 451
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=45.68 E-value=1.3e+02 Score=23.52 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=20.8
Q ss_pred HHHHHHccCCCEEEecCCCchhhhhcccccc
Q psy7344 131 EAAKLAEPHCDGIDINIGCPQMVAKRGHYGA 161 (240)
Q Consensus 131 ~aa~~le~~~d~Idin~gCP~~~~~~~g~G~ 161 (240)
-.++.+..|+|||.+ .||+... .|=.+|.
T Consensus 45 fvl~Al~~GaDGV~v-~GC~~ge-CHy~~GN 73 (132)
T COG1908 45 FVLKALRKGADGVLV-AGCKIGE-CHYISGN 73 (132)
T ss_pred HHHHHHHcCCCeEEE-ecccccc-eeeeccc
Confidence 356777789999999 8998875 3333444
No 452
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=45.64 E-value=69 Score=28.18 Aligned_cols=44 Identities=14% Similarity=0.015 Sum_probs=30.7
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCC
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIG 148 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~g 148 (240)
++..++-+.... +.|+++- ..+-...++++.+|-|+|+|-+|.|
T Consensus 177 n~~~l~~i~e~~---~vpVivd---AGIgt~sDa~~AmElGaDgVL~nSa 220 (267)
T CHL00162 177 NLLNLQIIIENA---KIPVIID---AGIGTPSEASQAMELGASGVLLNTA 220 (267)
T ss_pred CHHHHHHHHHcC---CCcEEEe---CCcCCHHHHHHHHHcCCCEEeecce
Confidence 466666665432 3565543 4455556788999999999999988
No 453
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=45.58 E-value=38 Score=31.45 Aligned_cols=47 Identities=11% Similarity=-0.055 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEecccccc
Q psy7344 165 DDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAML 228 (240)
Q Consensus 165 ~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~~~ 228 (240)
.+|+.++.+.+. .+.||.+|.-. ..+-++.+.+ |+|+|.|-+.-..|
T Consensus 240 ~tW~~i~~lr~~---------------~~~pvivKgV~--~~~dA~~a~~~G~d~I~vsnhGGr~ 287 (383)
T cd03332 240 LTWEDLAFLREW---------------TDLPIVLKGIL--HPDDARRAVEAGVDGVVVSNHGGRQ 287 (383)
T ss_pred CCHHHHHHHHHh---------------cCCCEEEecCC--CHHHHHHHHHCCCCEEEEcCCCCcC
Confidence 357766666553 67799999542 2456666777 99999986655444
No 454
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=45.54 E-value=44 Score=30.51 Aligned_cols=73 Identities=16% Similarity=0.084 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHcc-CC-CEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh
Q psy7344 125 DSKNLTEAAKLAEP-HC-DGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV 202 (240)
Q Consensus 125 d~~~~~~aa~~le~-~~-d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~ 202 (240)
++++..+.|+.+.+ |+ ...++-.| ++ .+ .+.+.+.++++.+++. ..+++.+-+-
T Consensus 85 ~~eeIle~Ak~ak~~Ga~r~c~~aag-------r~-~~----~~~~~i~~~v~~Vk~~-----------~~le~c~slG- 140 (335)
T COG0502 85 EVEEILEAAKKAKAAGATRFCMGAAG-------RG-PG----RDMEEVVEAIKAVKEE-----------LGLEVCASLG- 140 (335)
T ss_pred CHHHHHHHHHHHHHcCCceEEEEEec-------cC-CC----ccHHHHHHHHHHHHHh-----------cCcHHhhccC-
Confidence 56777888888865 53 33333222 11 11 6888999999988876 5667776666
Q ss_pred hcHHHHHHHHhC-CCCeEEE
Q psy7344 203 AKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 203 ~~~~~~~~~l~~-G~~~iti 221 (240)
..+.+-++.|.+ |++...-
T Consensus 141 ~l~~eq~~~L~~aGvd~ynh 160 (335)
T COG0502 141 MLTEEQAEKLADAGVDRYNH 160 (335)
T ss_pred CCCHHHHHHHHHcChhheec
Confidence 345677788888 9988754
No 455
>PRK14725 pyruvate kinase; Provisional
Probab=45.48 E-value=1.4e+02 Score=29.60 Aligned_cols=86 Identities=7% Similarity=0.002 Sum_probs=50.7
Q ss_pred CCceeEEeecCCHHHHHHHHHHHcc----CCCEEEecCCCchhhhhcccccccc--cCCHHHHHHHHHHhhhccccccCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEP----HCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYSPNMVHFVIAEP 187 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~----~~d~Idin~gCP~~~~~~~g~G~~l--~~~p~~i~~iv~~~~~~~~~i~~~ 187 (240)
..+++.+| .+++-+..+-+++.. ..|||||.+|= .|-.+ -.=|..=++|+...+..
T Consensus 473 ~~~IiaKI--Et~~av~nL~eIl~~am~~~~DGIMIARGD---------LgvEi~~e~lp~iQk~Ii~~c~~~------- 534 (608)
T PRK14725 473 DLGVVLKI--ETRRAFENLPRILLEAMRHPRFGVMIARGD---------LAVEVGFERLAEVQEEILWLCEAA------- 534 (608)
T ss_pred CCcEEEEE--CCHHHHHHHHHHHHhhccCCCcEEEEECCc---------cccccCHHHHHHHHHHHHHHHHHc-------
Confidence 46899998 444444444444433 37999999991 12221 22345556677665553
Q ss_pred CCCCCCeeeEEeee-hh--------cHHHHHHHHhC-CCCeEEEe
Q psy7344 188 HCDGNDINIGCPQM-VA--------KRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 188 ~~~~~~~pvsvK~r-~~--------~~~~~~~~l~~-G~~~itih 222 (240)
.+||.+=+. ++ +--|....... |+|+|.+-
T Consensus 535 -----~kPVI~ATQmLESM~~~p~PTRAEvtDVAnAvgaD~VMLS 574 (608)
T PRK14725 535 -----HVPVIWATQVLESLAKKGLPSRAEITDAAMALRAECVMLN 574 (608)
T ss_pred -----CCCEEEEcchHhhhccCCCCCchhHHHHHhhhcCCEEeec
Confidence 557766554 22 22455555666 99999883
No 456
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=45.32 E-value=1.2e+02 Score=27.94 Aligned_cols=87 Identities=7% Similarity=-0.114 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHc--cCCCEEEecCCCchhhhhccccc-ccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee
Q psy7344 125 DSKNLTEAAKLAE--PHCDGIDINIGCPQMVAKRGHYG-AYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM 201 (240)
Q Consensus 125 d~~~~~~aa~~le--~~~d~Idin~gCP~~~~~~~g~G-~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r 201 (240)
||++..++++... .++|.+-+..| +.||-|- ..---|++.+++|.+.+++.+.. .++ .++|+..-..
T Consensus 184 dPeeA~~Fv~~t~~~tgvD~LAvaiG-----t~HG~Y~~~~p~L~~~~L~~I~~~i~~~~~~-~~~----~~ipLVLHGg 253 (345)
T cd00946 184 QPEDVWYVYEALSKISPNFSIAAAFG-----NVHGVYKPGNVKLQPEILGEHQDYVREKLGL-ADD----KPLYFVFHGG 253 (345)
T ss_pred CHHHHHHHHHHhccCCCceeeeeecc-----ccccCCCCCCCccCHHHHHHHHHHHHHhhcc-ccC----CCCCEEEeCC
Confidence 5555555555442 27788888888 3555552 12234899999997765554100 000 1345544443
Q ss_pred hhcHHHHHHHHhC-CCCeEEE
Q psy7344 202 VAKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 202 ~~~~~~~~~~l~~-G~~~iti 221 (240)
-....+-.+.+.+ |+.-|.+
T Consensus 254 SG~~~e~i~kai~~GI~KiNi 274 (345)
T cd00946 254 SGSTKEEIREAISYGVVKMNI 274 (345)
T ss_pred CCCCHHHHHHHHHcCCeeEEe
Confidence 2222233444444 7766665
No 457
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=45.13 E-value=58 Score=27.24 Aligned_cols=43 Identities=21% Similarity=0.140 Sum_probs=26.2
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecC
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINI 147 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~ 147 (240)
++++++++...+ ..|+++- +.+.+..++.++++.|+|+|.++.
T Consensus 161 ~~~~i~~i~~~~---~iPvia~---GGI~t~~~~~~~l~~GadgV~iGs 203 (221)
T PRK01130 161 DFALLKELLKAV---GCPVIAE---GRINTPEQAKKALELGAHAVVVGG 203 (221)
T ss_pred CHHHHHHHHHhC---CCCEEEE---CCCCCHHHHHHHHHCCCCEEEEch
Confidence 355666665443 3677654 444444456666677899998863
No 458
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=44.65 E-value=1.8e+02 Score=24.08 Aligned_cols=93 Identities=8% Similarity=-0.158 Sum_probs=50.3
Q ss_pred hhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh
Q psy7344 100 WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM 179 (240)
Q Consensus 100 ~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~ 179 (240)
.+.++.+...+ +.|++++-+..++. .+...++.|+|+|-++.- . -.++.++++++....
T Consensus 61 ~~~~~~i~~~v---~iPi~~~~~i~~~~---~v~~~~~~Gad~v~l~~~--------------~-~~~~~~~~~~~~~~~ 119 (217)
T cd00331 61 LEDLRAVREAV---SLPVLRKDFIIDPY---QIYEARAAGADAVLLIVA--------------A-LDDEQLKELYELARE 119 (217)
T ss_pred HHHHHHHHHhc---CCCEEECCeecCHH---HHHHHHHcCCCEEEEeec--------------c-CCHHHHHHHHHHHHH
Confidence 45555554432 47877542223332 333444568898877333 1 134667777765433
Q ss_pred ccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEecccccc
Q psy7344 180 VHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTELGKMAML 228 (240)
Q Consensus 180 ~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih~R~~~~ 228 (240)
. . +.+..-+....+ ++.+.+ |++.+.+|+|+..+
T Consensus 120 ~------------g--~~~~v~v~~~~e-~~~~~~~g~~~i~~t~~~~~~ 154 (217)
T cd00331 120 L------------G--MEVLVEVHDEEE-LERALALGAKIIGINNRDLKT 154 (217)
T ss_pred c------------C--CeEEEEECCHHH-HHHHHHcCCCEEEEeCCCccc
Confidence 2 1 222222233344 455556 99999999887654
No 459
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=44.29 E-value=1.7e+02 Score=25.27 Aligned_cols=70 Identities=16% Similarity=0.083 Sum_probs=43.8
Q ss_pred eeEEeecCCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCee
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDIN 195 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~p 195 (240)
+|--+-+.|.+.....++..+. |++.|||. .||++++.+.+ . +++|
T Consensus 17 VIsGLnNFd~~~V~~i~~AA~~ggAt~vDIA------------------adp~LV~~~~~----~-----------s~lP 63 (242)
T PF04481_consen 17 VISGLNNFDAESVAAIVKAAEIGGATFVDIA------------------ADPELVKLAKS----L-----------SNLP 63 (242)
T ss_pred heeCccccCHHHHHHHHHHHHccCCceEEec------------------CCHHHHHHHHH----h-----------CCCC
Confidence 3333434588888888888877 68999982 37776654332 2 5667
Q ss_pred eEEeeehhcHHHHHHHHhCCCCeEEE
Q psy7344 196 IGCPQMVAKRGHYGAYLQDDWPLLTE 221 (240)
Q Consensus 196 vsvK~r~~~~~~~~~~l~~G~~~iti 221 (240)
|-|-- -+...|....+.|+|.|-|
T Consensus 64 ICVSa--Vep~~f~~aV~AGAdliEI 87 (242)
T PF04481_consen 64 ICVSA--VEPELFVAAVKAGADLIEI 87 (242)
T ss_pred eEeec--CCHHHHHHHHHhCCCEEEe
Confidence 65521 1344566555558888776
No 460
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.25 E-value=65 Score=28.78 Aligned_cols=64 Identities=9% Similarity=-0.036 Sum_probs=39.3
Q ss_pred HHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHH
Q psy7344 127 KNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRG 206 (240)
Q Consensus 127 ~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~ 206 (240)
+++.++.+.++.|+|.|++--- +|+.++++++.++.. ..+-.|.-+..
T Consensus 205 ~tleea~~a~~agaDiImLDnm-----------------spe~l~~av~~~~~~-----------~~leaSGGI~~---- 252 (290)
T PRK06559 205 ESLAAAEEAAAAGADIIMLDNM-----------------SLEQIEQAITLIAGR-----------SRIECSGNIDM---- 252 (290)
T ss_pred CCHHHHHHHHHcCCCEEEECCC-----------------CHHHHHHHHHHhcCc-----------eEEEEECCCCH----
Confidence 3344555666678999988433 788888888865443 22233333333
Q ss_pred HHHHHHhC-CCCeEEEe
Q psy7344 207 HYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 207 ~~~~~l~~-G~~~itih 222 (240)
+-++.+.. |+|.|++-
T Consensus 253 ~ni~~yA~tGVD~Is~g 269 (290)
T PRK06559 253 TTISRFRGLAIDYVSSG 269 (290)
T ss_pred HHHHHHHhcCCCEEEeC
Confidence 34444556 99999983
No 461
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=44.20 E-value=1.1e+02 Score=27.86 Aligned_cols=46 Identities=13% Similarity=0.004 Sum_probs=33.3
Q ss_pred ccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh---hcHHHHHHHHhC-CCC---eEEEecc
Q psy7344 163 LQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV---AKRGHYGAYLQD-DWP---LLTELGK 224 (240)
Q Consensus 163 l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~---~~~~~~~~~l~~-G~~---~itih~R 224 (240)
-+.|+++++.+.+ +..||.+|.-. ++....++.+.+ |.. .+-+|+=
T Consensus 119 ~~~n~pLL~~~A~----------------~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~ 171 (329)
T TIGR03569 119 EITNAPLLKKIAR----------------FGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCT 171 (329)
T ss_pred cccCHHHHHHHHh----------------cCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEEC
Confidence 4689998887775 56799999984 455666667777 875 6667753
No 462
>PRK06801 hypothetical protein; Provisional
Probab=43.88 E-value=98 Score=27.54 Aligned_cols=75 Identities=11% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHH
Q psy7344 128 NLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRG 206 (240)
Q Consensus 128 ~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~ 206 (240)
+..++.+..++ ++|.+-+..| +.|+.+...---+++.++++.+. +++|+..=..-....
T Consensus 157 ~pe~a~~f~~~tgvD~LAvaiG-----t~Hg~y~~~~~l~~e~l~~i~~~---------------~~~PLVlHGGSgi~~ 216 (286)
T PRK06801 157 DPQLARDFVDRTGIDALAVAIG-----NAHGKYKGEPKLDFARLAAIHQQ---------------TGLPLVLHGGSGISD 216 (286)
T ss_pred CHHHHHHHHHHHCcCEEEeccC-----CCCCCCCCCCCCCHHHHHHHHHh---------------cCCCEEEECCCCCCH
Q ss_pred HHHHHHhC-CCCeEEEe
Q psy7344 207 HYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 207 ~~~~~l~~-G~~~itih 222 (240)
+-.+.+.+ |++.|.+.
T Consensus 217 e~~~~~i~~Gi~KINv~ 233 (286)
T PRK06801 217 ADFRRAIELGIHKINFY 233 (286)
T ss_pred HHHHHHHHcCCcEEEeh
No 463
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=43.87 E-value=1.6e+02 Score=25.54 Aligned_cols=81 Identities=9% Similarity=-0.065 Sum_probs=45.3
Q ss_pred eeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeee
Q psy7344 117 HSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINI 196 (240)
Q Consensus 117 vivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pv 196 (240)
+++-|--.+.+...++++.+.+..+.+-++ -|.- +..-++.++++.+.. . +|
T Consensus 14 livaLD~~~~~~~~~~~~~~~~~~~~~Kvg--~~l~----------~~~g~~~~~el~~~~--------------~--~V 65 (240)
T COG0284 14 LIVALDVPTEEEALAFVDKLGPTVDFVKVG--KPLV----------AFFGADILEELKARG--------------K--KV 65 (240)
T ss_pred eEEEECCCCHHHHHHHHHHhhccccEEEEc--hHHH----------HhccHHHHHHHHHhC--------------C--ce
Confidence 666653445555556666665545555543 2222 122344555555431 1 44
Q ss_pred E--Eeee-hhcH-HHHHHHHhC-CCCeEEEeccc
Q psy7344 197 G--CPQM-VAKR-GHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 197 s--vK~r-~~~~-~~~~~~l~~-G~~~itih~R~ 225 (240)
. .|.- +.+| ...++.+.+ |+|.+|+|+=.
T Consensus 66 flDlK~~DIpnT~~~~~~~~~~~g~d~vtvH~~~ 99 (240)
T COG0284 66 FLDLKLADIPNTVALAAKAAADLGADAVTVHAFG 99 (240)
T ss_pred EEeeecccchHHHHHHHHHhhhcCCcEEEEeCcC
Confidence 4 4444 5555 456677778 99999999865
No 464
>PRK07534 methionine synthase I; Validated
Probab=43.70 E-value=1.4e+02 Score=27.22 Aligned_cols=36 Identities=14% Similarity=-0.099 Sum_probs=24.8
Q ss_pred CCCceeEEeec------CCHHHHHHHHHHHcc-C--CCEEEecCC
Q psy7344 113 HMCGHSLMFCG------NDSKNLTEAAKLAEP-H--CDGIDINIG 148 (240)
Q Consensus 113 ~~~pvivqi~g------~d~~~~~~aa~~le~-~--~d~Idin~g 148 (240)
...|+++++.- .|..++.+++..+.. + .++|-+||+
T Consensus 169 ~~~Pv~vSft~~~~g~l~~G~~~~~~~~~~~~~~~~~~avGvNC~ 213 (336)
T PRK07534 169 AGMPWCGTMSFDTAGRTMMGLTPADLADLVEKLGEPPLAFGANCG 213 (336)
T ss_pred cCCeEEEEEEECCCCeeCCCCcHHHHHHHHHhcCCCceEEEecCC
Confidence 35799888742 245566667776653 3 499999999
No 465
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=43.60 E-value=66 Score=28.61 Aligned_cols=75 Identities=16% Similarity=0.125 Sum_probs=42.1
Q ss_pred HHHHHHHHHcc-CCCEEEecCCCchhhhhcccccc--cccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhc
Q psy7344 128 NLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGA--YLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAK 204 (240)
Q Consensus 128 ~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~--~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~ 204 (240)
+..++.+.+++ ++|.+-+..| +.||.|.. .---|.+.+++|.+.+. ++|+..-..-..
T Consensus 156 dP~~a~~Fv~~TgvD~LAvaiG-----t~HG~y~~~~~p~Ld~~~L~~I~~~~~--------------~iPLVlHGgSG~ 216 (287)
T PF01116_consen 156 DPEEAKEFVEETGVDALAVAIG-----TAHGMYKGGKKPKLDFDRLKEIREAVP--------------DIPLVLHGGSGL 216 (287)
T ss_dssp SHHHHHHHHHHHTTSEEEE-SS-----SBSSSBSSSSSTC--HHHHHHHHHHHH--------------TSEEEESSCTTS
T ss_pred CHHHHHHHHHHhCCCEEEEecC-----ccccccCCCCCcccCHHHHHHHHHhcC--------------CCCEEEECCCCC
Confidence 34566666655 9999999999 45555544 22236777777776532 456655544333
Q ss_pred HHHHHHHHhC-CCCeEEE
Q psy7344 205 RGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 205 ~~~~~~~l~~-G~~~iti 221 (240)
..+-.+.+.. |+.-|.+
T Consensus 217 ~~e~~~~ai~~Gi~KiNi 234 (287)
T PF01116_consen 217 PDEQIRKAIKNGISKINI 234 (287)
T ss_dssp -HHHHHHHHHTTEEEEEE
T ss_pred CHHHHHHHHHcCceEEEE
Confidence 3334444444 7776666
No 466
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=42.80 E-value=1.4e+02 Score=28.76 Aligned_cols=73 Identities=12% Similarity=-0.036 Sum_probs=46.9
Q ss_pred CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCC--CeeeEEee
Q psy7344 124 NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGN--DINIGCPQ 200 (240)
Q Consensus 124 ~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~--~~pvsvK~ 200 (240)
.+++.+.+.++.+++ |+|.|-|- --.| +..|+.+.++++++++. . ++|+.+-.
T Consensus 152 ~t~e~~~~~a~~l~~~Gad~I~Ik----------DtaG---ll~P~~~~~LV~~Lk~~-----------~~~~ipI~~H~ 207 (499)
T PRK12330 152 HTVEGFVEQAKRLLDMGADSICIK----------DMAA---LLKPQPAYDIVKGIKEA-----------CGEDTRINLHC 207 (499)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeC----------CCcc---CCCHHHHHHHHHHHHHh-----------CCCCCeEEEEe
Confidence 378888898888866 77776551 1122 36999999999999987 4 57777644
Q ss_pred ehh--c-HHHHHHHHhCCCCeEE
Q psy7344 201 MVA--K-RGHYGAYLQDDWPLLT 220 (240)
Q Consensus 201 r~~--~-~~~~~~~l~~G~~~it 220 (240)
=-+ . +.-...+++.||+.|-
T Consensus 208 Hnt~GlA~An~laAieAGad~vD 230 (499)
T PRK12330 208 HSTTGVTLVSLMKAIEAGVDVVD 230 (499)
T ss_pred CCCCCcHHHHHHHHHHcCCCEEE
Confidence 311 1 1223333344888753
No 467
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=42.75 E-value=2.6e+02 Score=25.72 Aligned_cols=91 Identities=18% Similarity=0.065 Sum_probs=55.9
Q ss_pred hhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 101 PLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 101 eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
+.+.+++..+ ..|++.-|- .++.-+++..+.++|.+-||-|- ..+.+.+++++++.++.
T Consensus 64 ~A~~~Ik~~~---~vPLVaDiH----f~~rla~~~~~~g~~k~RINPGN--------------ig~~~~v~~vVe~Ak~~ 122 (361)
T COG0821 64 EALKEIKQRL---NVPLVADIH----FDYRLALEAAECGVDKVRINPGN--------------IGFKDRVREVVEAAKDK 122 (361)
T ss_pred HHHHHHHHhC---CCCEEEEee----ccHHHHHHhhhcCcceEEECCcc--------------cCcHHHHHHHHHHHHHc
Confidence 3444555443 578886541 12233444556679999999981 23556899999988774
Q ss_pred cccccCCCCCCCCeeeEEeee------------------hhcHHHHHHHHhC-CCCeEEEe
Q psy7344 181 HFVIAEPHCDGNDINIGCPQM------------------VAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 181 ~~~i~~~~~~~~~~pvsvK~r------------------~~~~~~~~~~l~~-G~~~itih 222 (240)
+..+.+-|+-- +++..+.++.+++ |-+.|.+-
T Consensus 123 ----------g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS 173 (361)
T COG0821 123 ----------GIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVS 173 (361)
T ss_pred ----------CCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 02222333322 2456778888999 98877664
No 468
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=42.70 E-value=1.2e+02 Score=27.28 Aligned_cols=53 Identities=11% Similarity=0.009 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEE
Q psy7344 165 DDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 165 ~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~iti 221 (240)
.+++...++++.+++..+-+ ..++++-|-.-...++..+..+.|++ |++.+++
T Consensus 188 ~t~e~~Le~l~~ak~~~pgi----~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~i 241 (302)
T TIGR00510 188 ATYRWSLKLLERAKEYLPNL----PTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTL 241 (302)
T ss_pred CCHHHHHHHHHHHHHhCCCC----eecceEEEECCCCHHHHHHHHHHHHhcCCCEEEe
Confidence 57777778888877752111 01122333331114567888889999 9999999
No 469
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=42.39 E-value=2.2e+02 Score=24.44 Aligned_cols=44 Identities=20% Similarity=0.103 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 124 NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 124 ~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
.+++.+.+.++.+.+ |++.|-|.= -.|. ..|+.++++++.+++.
T Consensus 136 ~~~~~~~~~~~~~~~~G~~~i~l~D----------T~G~---~~P~~v~~lv~~l~~~ 180 (259)
T cd07939 136 ADPDFLIEFAEVAQEAGADRLRFAD----------TVGI---LDPFTTYELIRRLRAA 180 (259)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeCC----------CCCC---CCHHHHHHHHHHHHHh
Confidence 478888888888755 677765521 1233 5899999999999887
No 470
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=42.24 E-value=2.7e+02 Score=25.29 Aligned_cols=52 Identities=17% Similarity=0.020 Sum_probs=36.6
Q ss_pred ceeEEeec---CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 116 GHSLMFCG---NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 116 pvivqi~g---~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
-+.+++.. .+++.+.+.++.+++ |++.|-|-=. .|. ..|+.+.++++.+++.
T Consensus 130 ~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT----------~G~---~~P~~v~~~v~~l~~~ 185 (337)
T PRK08195 130 DTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDS----------AGA---LLPEDVRDRVRALRAA 185 (337)
T ss_pred eEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCC----------CCC---CCHHHHHHHHHHHHHh
Confidence 35555532 478889998888866 7777654211 333 5899999999999987
No 471
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=42.24 E-value=19 Score=31.55 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=30.0
Q ss_pred cccCCCCeecccCCCchhhhhccCCCcccCCCchhHHHHHHHhhcccCCCceee
Q psy7344 10 ETEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFSWVSKNGPLFM 63 (240)
Q Consensus 10 ~~~~~~d~id~N~gcP~~kv~k~~~G~~l~~~~~l~~~iv~ql~~~~~~~p~~v 63 (240)
.++.|+|.||||++-+ .-++++.+.++|..+. +..+.|+.+
T Consensus 34 ~~~~GAdiIDVg~~~~------------~~eE~~r~~~~v~~l~-~~~~~plsI 74 (261)
T PRK07535 34 QAEAGADYLDVNAGTA------------VEEEPETMEWLVETVQ-EVVDVPLCI 74 (261)
T ss_pred HHHCCCCEEEECCCCC------------chhHHHHHHHHHHHHH-HhCCCCEEE
Confidence 4578999999998822 2455788888888887 344778765
No 472
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=42.05 E-value=2.4e+02 Score=24.66 Aligned_cols=44 Identities=20% Similarity=-0.017 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc
Q psy7344 124 NDSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV 180 (240)
Q Consensus 124 ~d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~ 180 (240)
.+++.+.+.++.+.+ |+|.|-|-= -.|. ..|+.+.++++.+++.
T Consensus 146 ~~~~~~~~~~~~~~~~Ga~~i~l~D----------T~G~---~~P~~v~~lv~~l~~~ 190 (275)
T cd07937 146 HTLEYYVKLAKELEDMGADSICIKD----------MAGL---LTPYAAYELVKALKKE 190 (275)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcC----------CCCC---CCHHHHHHHHHHHHHh
Confidence 477888888888765 788776521 1233 5899999999999987
No 473
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=42.00 E-value=66 Score=28.22 Aligned_cols=61 Identities=13% Similarity=-0.011 Sum_probs=36.7
Q ss_pred HHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHH
Q psy7344 129 LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHY 208 (240)
Q Consensus 129 ~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~ 208 (240)
+.++.+.++.++|.|++.- -.|+.++++++.++.. +|+.+=.-+ +.+-
T Consensus 188 ~eea~~A~~~gaDyI~ld~-----------------~~~e~lk~~v~~~~~~-------------ipi~AsGGI--~~~n 235 (265)
T TIGR00078 188 LEEAEEAAEAGADIIMLDN-----------------MKPEEIKEAVQLLKGR-------------VLLEASGGI--TLDN 235 (265)
T ss_pred HHHHHHHHHcCCCEEEECC-----------------CCHHHHHHHHHHhcCC-------------CcEEEECCC--CHHH
Confidence 3445555567889998822 2457777777764332 355543333 2344
Q ss_pred HHHHhC-CCCeEEE
Q psy7344 209 GAYLQD-DWPLLTE 221 (240)
Q Consensus 209 ~~~l~~-G~~~iti 221 (240)
++.+.+ |+|.|.+
T Consensus 236 i~~~a~~Gvd~Isv 249 (265)
T TIGR00078 236 LEEYAETGVDVISS 249 (265)
T ss_pred HHHHHHcCCCEEEe
Confidence 445556 9999999
No 474
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=41.89 E-value=68 Score=28.77 Aligned_cols=71 Identities=10% Similarity=-0.028 Sum_probs=42.0
Q ss_pred CceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCe
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDI 194 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~ 194 (240)
.++.|.. +++.++.+.++.|+|.|++--- .|+.++++++.++.. ..+
T Consensus 209 ~kIeVEv-----~sleea~ea~~~gaDiI~LDn~-----------------s~e~~~~av~~~~~~-----------~~i 255 (296)
T PRK09016 209 VPVEVEV-----ENLDELDQALKAGADIIMLDNF-----------------TTEQMREAVKRTNGR-----------ALL 255 (296)
T ss_pred CCEEEEe-----CCHHHHHHHHHcCCCEEEeCCC-----------------ChHHHHHHHHhhcCC-----------eEE
Confidence 4555553 3455666666778889887332 577888888765432 222
Q ss_pred eeEEeeehhcHHHHHHHHhC-CCCeEEEe
Q psy7344 195 NIGCPQMVAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 195 pvsvK~r~~~~~~~~~~l~~-G~~~itih 222 (240)
-+|.-+.. +-++.+.+ |+|.|++-
T Consensus 256 eaSGGI~~----~ni~~yA~tGVD~Is~g 280 (296)
T PRK09016 256 EVSGNVTL----ETLREFAETGVDFISVG 280 (296)
T ss_pred EEECCCCH----HHHHHHHhcCCCEEEeC
Confidence 23332333 34445566 99999983
No 475
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=41.87 E-value=2.3e+02 Score=25.14 Aligned_cols=102 Identities=6% Similarity=-0.012 Sum_probs=52.5
Q ss_pred CceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh-cccc-ccCCCCCCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM-VHFV-IAEPHCDGN 192 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~-~~~~-i~~~~~~~~ 192 (240)
.|+.+.+-.+ .++..+.+.++.|++-||+-.+ ..+ +-.|-...+++++.... ++.| -+-|.+.+.
T Consensus 78 VPV~lHLDHg--~~~e~i~~ai~~GftSVM~DgS-~lp----------~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ 144 (285)
T PRK07709 78 VPVAIHLDHG--SSFEKCKEAIDAGFTSVMIDAS-HHP----------FEENVETTKKVVEYAHARNVSVEAELGTVGGQ 144 (285)
T ss_pred CcEEEECCCC--CCHHHHHHHHHcCCCEEEEeCC-CCC----------HHHHHHHHHHHHHHHHHcCCEEEEEEeccCCc
Confidence 5888887432 1233444566678888888544 111 22455666677766554 2221 011222111
Q ss_pred CeeeEE-eeehhcHHHHHHHHhC-CCCeEEEeccccccc
Q psy7344 193 DINIGC-PQMVAKRGHYGAYLQD-DWPLLTELGKMAMLV 229 (240)
Q Consensus 193 ~~pvsv-K~r~~~~~~~~~~l~~-G~~~itih~R~~~~~ 229 (240)
.-.+.. ..-+.+..+..+.+++ |+|.+.+---|..-.
T Consensus 145 ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~ 183 (285)
T PRK07709 145 EDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGP 183 (285)
T ss_pred cCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccC
Confidence 100000 1114567788888888 999987644444433
No 476
>TIGR03586 PseI pseudaminic acid synthase.
Probab=41.79 E-value=1.1e+02 Score=27.89 Aligned_cols=105 Identities=10% Similarity=-0.000 Sum_probs=0.0
Q ss_pred ceeeeCChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHH
Q psy7344 93 GAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTN 172 (240)
Q Consensus 93 ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~ 172 (240)
++.-..++++++.+..+ ..|++++.+.++.+++..+++.+.+ .||+.-...| +....=....+.=-.
T Consensus 117 ~S~~~~n~~LL~~va~~----gkPvilstG~~t~~Ei~~Av~~i~~--------~g~~~i~Llh-C~s~YP~~~~~~nL~ 183 (327)
T TIGR03586 117 ASFEITDLPLIRYVAKT----GKPIIMSTGIATLEEIQEAVEACRE--------AGCKDLVLLK-CTSSYPAPLEDANLR 183 (327)
T ss_pred CCccccCHHHHHHHHhc----CCcEEEECCCCCHHHHHHHHHHHHH--------CCCCcEEEEe-cCCCCCCCcccCCHH
Q ss_pred HHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHHHHHhC-CCCeEEEe
Q psy7344 173 LVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYLQD-DWPLLTEL 222 (240)
Q Consensus 173 iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~~~l~~-G~~~itih 222 (240)
.+..+++. ...||..-- -..-...+.+... ||+.|=.|
T Consensus 184 ~i~~lk~~-----------f~~pVG~SD-Ht~G~~~~~aAva~GA~iIEkH 222 (327)
T TIGR03586 184 TIPDLAER-----------FNVPVGLSD-HTLGILAPVAAVALGACVIEKH 222 (327)
T ss_pred HHHHHHHH-----------hCCCEEeeC-CCCchHHHHHHHHcCCCEEEeC
No 477
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=41.69 E-value=37 Score=29.62 Aligned_cols=44 Identities=14% Similarity=-0.034 Sum_probs=33.6
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCC
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIG 148 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~g 148 (240)
++++|+.+.... +.|+++- +.+.+..++.+.++.|+|+|-+|-+
T Consensus 163 ~~~~I~~I~e~~---~vpVI~e---gGI~tpeda~~AmelGAdgVlV~SA 206 (248)
T cd04728 163 NPYNLRIIIERA---DVPVIVD---AGIGTPSDAAQAMELGADAVLLNTA 206 (248)
T ss_pred CHHHHHHHHHhC---CCcEEEe---CCCCCHHHHHHHHHcCCCEEEEChH
Confidence 588888776542 3676654 6666677888999999999999887
No 478
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=41.56 E-value=66 Score=28.17 Aligned_cols=31 Identities=10% Similarity=0.011 Sum_probs=21.6
Q ss_pred CeeeE--Eeee-hhcH-HHHHHHHh-C-CCCeEEEec
Q psy7344 193 DINIG--CPQM-VAKR-GHYGAYLQ-D-DWPLLTELG 223 (240)
Q Consensus 193 ~~pvs--vK~r-~~~~-~~~~~~l~-~-G~~~itih~ 223 (240)
.++|. +|.- +.+| ..+++.+. . |+|++|+|+
T Consensus 86 g~~VilD~K~~DIpnTv~~~a~a~~~~~g~D~vTvh~ 122 (261)
T TIGR02127 86 GLPVLADVKRGDIGSTASAYAKAWLGHLHADALTVSP 122 (261)
T ss_pred CCeEEEEeeccChHHHHHHHHHHHHhhcCCCEEEECC
Confidence 34555 4444 5555 46888776 7 999999998
No 479
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=41.48 E-value=2.2e+02 Score=24.04 Aligned_cols=34 Identities=9% Similarity=-0.011 Sum_probs=28.8
Q ss_pred CceeEEeecCCHHHHHHHHHHHcc-CCCEEEecCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLAEP-HCDGIDINIG 148 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~le~-~~d~Idin~g 148 (240)
.+++..+++.++++..+.++.+.+ |+..||+-+-
T Consensus 8 ~~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~ 42 (204)
T TIGR01182 8 AKIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLR 42 (204)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 578888899999999999998865 7899998665
No 480
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=41.42 E-value=1.8e+02 Score=27.88 Aligned_cols=106 Identities=13% Similarity=0.088 Sum_probs=58.6
Q ss_pred hHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhccccccccc--CCHHHHHHHHHHhhh
Q psy7344 102 LLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ--DDWPLLTNLVYSPNM 179 (240)
Q Consensus 102 li~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~--~~p~~i~~iv~~~~~ 179 (240)
.++++.......+.+++.+| ..++-...+-+.++ ..||||+.+| -.|-.+. .=|-.=++|++..+.
T Consensus 205 ~~R~~l~~~~~~~~~iiaKI--E~~eav~NldeIi~-~SDGIMVARG---------DLGVEip~e~Vp~~QK~iI~~~~~ 272 (477)
T COG0469 205 EVREILAETGGRDVKIIAKI--ENQEAVDNLDEIIE-ASDGIMVARG---------DLGVEIPLEEVPIIQKRIIRKARR 272 (477)
T ss_pred HHHHHHHHhCCCCceEEEee--cCHHHHhHHHHHHH-hcCceEEEec---------ccccccCHHHhhHHHHHHHHHHHH
Confidence 33434333333336788887 33333333223332 3599999888 1232221 123333567776666
Q ss_pred ccccccCCCCCCCCeeeEEeeehh-----------cHHHHHHHHhCCCCeEEEecccccccC
Q psy7344 180 VHFVIAEPHCDGNDINIGCPQMVA-----------KRGHYGAYLQDDWPLLTELGKMAMLVG 230 (240)
Q Consensus 180 ~~~~i~~~~~~~~~~pvsvK~r~~-----------~~~~~~~~l~~G~~~itih~R~~~~~~ 230 (240)
. .+.++++-..++ ..-|.+.+..+|.|++.+-+=|..-.|
T Consensus 273 ~-----------gkpVItATQMLeSMi~np~PTRAEvsDVanAvlDGtDAvMLS~ETA~G~y 323 (477)
T COG0469 273 A-----------GKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKY 323 (477)
T ss_pred c-----------CCceEEeeccHHHHhhCCCCCchhhhHHHHHHHhCCceeeechhhhcCCC
Confidence 4 344445544432 245677778889999999888776554
No 481
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=41.32 E-value=1.9e+02 Score=26.17 Aligned_cols=52 Identities=12% Similarity=0.024 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHh
Q psy7344 125 DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSP 177 (240)
Q Consensus 125 d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~ 177 (240)
+.++..+.++.+.+ |++.||++.|=...-.. -.+|.....+++.++.+.+.+
T Consensus 23 ~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s-~~~g~~~~~~~e~i~~~~~~~ 75 (337)
T PRK08195 23 TLEQVRAIARALDAAGVPVIEVTHGDGLGGSS-FNYGFGAHTDEEYIEAAAEVV 75 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeecCCCCCCcc-ccCCCCCCCHHHHHHHHHHhC
Confidence 66777888888865 89999997552110000 012333345788777776654
No 482
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=41.15 E-value=2.2e+02 Score=25.00 Aligned_cols=100 Identities=10% Similarity=-0.076 Sum_probs=56.4
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGND 193 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~ 193 (240)
..|+-+|+.-||+.....+|.. .+++.|-+|.-|=...+ ..|. +-.+...+-+..+.+...+.++++
T Consensus 79 ~~p~GvnvL~nd~~aal~iA~a--~ga~FIRv~~~~g~~~~-d~G~---~~~~a~e~~r~r~~l~~~v~i~ad------- 145 (257)
T TIGR00259 79 SIPLGINVLRNDAVAALAIAMA--VGAKFIRVNVLTGVYAS-DQGI---IEGNAGELIRYKKLLGSEVKILAD------- 145 (257)
T ss_pred CCCeeeeeecCCCHHHHHHHHH--hCCCEEEEccEeeeEec-cccc---ccccHHHHHHHHHHcCCCcEEEec-------
Confidence 3589999888888766555554 36788888765433322 2221 223444444555554433322211
Q ss_pred eeeEEeee----hhcHHHHHHHHhC-C-CCeEEEecccccc
Q psy7344 194 INIGCPQM----VAKRGHYGAYLQD-D-WPLLTELGKMAML 228 (240)
Q Consensus 194 ~pvsvK~r----~~~~~~~~~~l~~-G-~~~itih~R~~~~ 228 (240)
|-+|.- -.+..+.++..+. | +|+|.+-|..-.+
T Consensus 146 --V~~kh~~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG~ 184 (257)
T TIGR00259 146 --IVVKHAVHLGNRDLESIALDTVERGLADAVILSGKTTGT 184 (257)
T ss_pred --eeecccCcCCCCCHHHHHHHHHHhcCCCEEEECcCCCCC
Confidence 222222 1356777887766 5 9999997765443
No 483
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=41.13 E-value=1.8e+02 Score=24.87 Aligned_cols=91 Identities=7% Similarity=-0.029 Sum_probs=55.5
Q ss_pred hhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh-
Q psy7344 100 WPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN- 178 (240)
Q Consensus 100 ~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~- 178 (240)
.++++++.... ..| +|++| .+.+..++.+.++.|++-|-+|.. ...+|+.++++.+..-
T Consensus 62 ~~~i~~i~~~~---~~~--v~vGG-GIrs~e~~~~~l~~Ga~kvvigt~--------------a~~~p~~~~~~~~~~g~ 121 (232)
T PRK13586 62 EMYIKEISKIG---FDW--IQVGG-GIRDIEKAKRLLSLDVNALVFSTI--------------VFTNFNLFHDIVREIGS 121 (232)
T ss_pred HHHHHHHHhhC---CCC--EEEeC-CcCCHHHHHHHHHCCCCEEEECch--------------hhCCHHHHHHHHHHhCC
Confidence 46777765421 124 46544 344445566666777777755433 5689999999988762
Q ss_pred hccccccCCCCCCCCeeeEEeee---------h----hcHHHHHHHHhC-CCCeEEEec
Q psy7344 179 MVHFVIAEPHCDGNDINIGCPQM---------V----AKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 179 ~~~~~i~~~~~~~~~~pvsvK~r---------~----~~~~~~~~~l~~-G~~~itih~ 223 (240)
+. +-+++-.| + .+..++++.+++ |+..+.++.
T Consensus 122 ~~-------------ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~td 167 (232)
T PRK13586 122 NR-------------VLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLGIIFTY 167 (232)
T ss_pred CC-------------EEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEEEec
Confidence 22 11222221 1 246799999999 998877643
No 484
>PLN02363 phosphoribosylanthranilate isomerase
Probab=41.06 E-value=99 Score=27.01 Aligned_cols=53 Identities=23% Similarity=0.381 Sum_probs=35.7
Q ss_pred CceeEEeecC-CHHHHHHHHHHHccCCCEEEecCCCchhhhhccccccccc-CCHHHHHHHHHHhhhc
Q psy7344 115 CGHSLMFCGN-DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQ-DDWPLLTNLVYSPNMV 180 (240)
Q Consensus 115 ~pvivqi~g~-d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~-~~p~~i~~iv~~~~~~ 180 (240)
.|++ |.|+ +++...++.+.+ ...|||++.|= .. .. | . +|+++++++++.++..
T Consensus 200 ~p~i--LAGGL~peNV~~ai~~~--~P~GVDVsSGV---E~-~p--G---~~KD~~KI~~fv~~vr~~ 254 (256)
T PLN02363 200 NGWL--LAGGLTPENVHEAVSLL--KPTGVDVSSGI---CG-PD--G---IRKDPSKISSFISAVKSV 254 (256)
T ss_pred CCEE--EECCCCHHHHHHHHHhc--CCcEEEeCCcc---cC-CC--C---cccCHHHHHHHHHHHHhh
Confidence 3543 4454 888777766544 35699999882 11 11 1 4 8999999999998764
No 485
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=40.98 E-value=1.1e+02 Score=27.32 Aligned_cols=44 Identities=7% Similarity=-0.086 Sum_probs=28.8
Q ss_pred ceeeeCChhhHHHhhhcccCCCCceeEEeecC-----CHHHHHHHHHHH
Q psy7344 93 GAYLQDDWPLLTELGFKTRSHMCGHSLMFCGN-----DSKNLTEAAKLA 136 (240)
Q Consensus 93 ga~l~~d~eli~~i~~~~~~~~~pvivqi~g~-----d~~~~~~aa~~l 136 (240)
++|-..+.+.+..++.+......|+|+|+.-+ ..+.+..+++.+
T Consensus 21 ~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~ 69 (284)
T PRK09195 21 PAFNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAA 69 (284)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHH
Confidence 44667778988888766555568999998542 334455555544
No 486
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=40.78 E-value=1.4e+02 Score=28.14 Aligned_cols=70 Identities=16% Similarity=0.067 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhc
Q psy7344 125 DSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAK 204 (240)
Q Consensus 125 d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~ 204 (240)
..+.+.++..+++.++|.|.|...= + +-..+.+.++++++.. .++||.++-- .
T Consensus 222 ~~~~~~r~~~L~~aG~d~I~vd~a~-------g--------~~~~~~~~i~~i~~~~----------~~~~vi~G~v--~ 274 (450)
T TIGR01302 222 REFDKERAEALVKAGVDVIVIDSSH-------G--------HSIYVIDSIKEIKKTY----------PDLDIIAGNV--A 274 (450)
T ss_pred chhHHHHHHHHHHhCCCEEEEECCC-------C--------cHhHHHHHHHHHHHhC----------CCCCEEEEeC--C
Confidence 4566677777778899999997761 1 2223445666666542 3567777332 3
Q ss_pred HHHHHHHHhC-CCCeEEE
Q psy7344 205 RGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 205 ~~~~~~~l~~-G~~~iti 221 (240)
+.+-++.+.+ |+|+|-+
T Consensus 275 t~~~a~~l~~aGad~i~v 292 (450)
T TIGR01302 275 TAEQAKALIDAGADGLRV 292 (450)
T ss_pred CHHHHHHHHHhCCCEEEE
Confidence 4466777777 9999975
No 487
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=40.74 E-value=1.1e+02 Score=26.23 Aligned_cols=91 Identities=13% Similarity=-0.003 Sum_probs=44.5
Q ss_pred HHHHHHHHHc-cCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhc-cccccCCCCCC-CCeeeEE---eee
Q psy7344 128 NLTEAAKLAE-PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMV-HFVIAEPHCDG-NDINIGC---PQM 201 (240)
Q Consensus 128 ~~~~aa~~le-~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~-~~~i~~~~~~~-~~~pvsv---K~r 201 (240)
++.+..+.+. .|+++|+|..+-+.... ..+-.+++.+.++.+.+++. +.+.+ -.+.. ...+... ..|
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~------~~~~~~~~~~~~l~~~l~~~gl~i~~-~~~~~~~~~~~~~~~~~~r 94 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDERL------ARLDWSREQRLALVNALVETGFRVNS-MCLSAHRRFPLGSEDDAVR 94 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCccccch------hccCCCHHHHHHHHHHHHHcCCceeE-EecccccccCCCCCCHHHH
Confidence 4556666664 48999999655321110 00112456666777766553 11100 00000 0000000 001
Q ss_pred ---hhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 202 ---VAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 202 ---~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
++.+.+.++.+.+ |++.|++++..
T Consensus 95 ~~~~~~~~~~i~~a~~lG~~~i~~~~~~ 122 (283)
T PRK13209 95 AQALEIMRKAIQLAQDLGIRVIQLAGYD 122 (283)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 2334566677788 99999998653
No 488
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=40.56 E-value=2.6e+02 Score=24.92 Aligned_cols=108 Identities=6% Similarity=-0.021 Sum_probs=52.2
Q ss_pred CceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhh-cccc-ccCCCCCCC
Q psy7344 115 CGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNM-VHFV-IAEPHCDGN 192 (240)
Q Consensus 115 ~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~-~~~~-i~~~~~~~~ 192 (240)
.|+.+.+-.+. ++..+.+.++.|++-||+-.+- .+ +-.|-...+++++.... ++.| -+-|.+.+.
T Consensus 78 vPV~lHLDHg~--~~e~i~~ai~~GftSVM~DgS~-l~----------~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ 144 (286)
T PRK08610 78 IPVAIHLDHGS--SFEKCKEAIDAGFTSVMIDASH-SP----------FEENVATTKKVVEYAHEKGVSVEAELGTVGGQ 144 (286)
T ss_pred CCEEEECCCCC--CHHHHHHHHHcCCCEEEEeCCC-CC----------HHHHHHHHHHHHHHHHHcCCEEEEEEeccCCc
Confidence 57888774321 2333445566678888875441 11 12344455555555443 1111 011222111
Q ss_pred CeeeEE-eeehhcHHHHHHHHhC-CCCeEEEecccccccCCCCCCCC
Q psy7344 193 DINIGC-PQMVAKRGHYGAYLQD-DWPLLTELGKMAMLVGILDNTGS 237 (240)
Q Consensus 193 ~~pvsv-K~r~~~~~~~~~~l~~-G~~~itih~R~~~~~~~~~~~ad 237 (240)
.-.+.. ...+.+..+..+.+++ |+|.+.+---|..-. |++..+
T Consensus 145 ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~--Y~~~p~ 189 (286)
T PRK08610 145 EDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGP--YKGEPK 189 (286)
T ss_pred cCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccc--cCCCCC
Confidence 101111 1114566777788888 999887755554444 344443
No 489
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=40.56 E-value=2.6e+02 Score=24.70 Aligned_cols=73 Identities=5% Similarity=-0.039 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehh
Q psy7344 125 DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVA 203 (240)
Q Consensus 125 d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~ 203 (240)
+++.+.+.++.+.+ |+|.|-|-= ..| ...|..+.++++.+++.+ .++|+.+-.--+
T Consensus 153 ~~~~~~~~~~~~~~~G~d~i~l~D----------T~G---~~~P~~v~~lv~~l~~~~----------~~~~i~~H~Hn~ 209 (287)
T PRK05692 153 PPEAVADVAERLFALGCYEISLGD----------TIG---VGTPGQVRAVLEAVLAEF----------PAERLAGHFHDT 209 (287)
T ss_pred CHHHHHHHHHHHHHcCCcEEEecc----------ccC---ccCHHHHHHHHHHHHHhC----------CCCeEEEEecCC
Confidence 67888888888865 777765521 122 259999999999999872 235666543311
Q ss_pred cHHHHHHH--HhC-CCCeEE
Q psy7344 204 KRGHYGAY--LQD-DWPLLT 220 (240)
Q Consensus 204 ~~~~~~~~--l~~-G~~~it 220 (240)
.-..++.. ..+ |++.|.
T Consensus 210 ~Gla~AN~laA~~aG~~~id 229 (287)
T PRK05692 210 YGQALANIYASLEEGITVFD 229 (287)
T ss_pred CCcHHHHHHHHHHhCCCEEE
Confidence 11222222 234 998763
No 490
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=40.23 E-value=97 Score=27.57 Aligned_cols=73 Identities=14% Similarity=0.122 Sum_probs=43.3
Q ss_pred HHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHH
Q psy7344 128 NLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRG 206 (240)
Q Consensus 128 ~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~ 206 (240)
+..++.+.+++ ++|.+-+..|= .||-|-. ---|++.+++|.+. +++|+..-..-....
T Consensus 154 ~pe~a~~Fv~~TgvD~LAvaiGt-----~HG~Y~~-p~l~~~~l~~I~~~---------------~~vPLVlHGgSG~~~ 212 (283)
T PRK07998 154 EPEKVKDFVERTGCDMLAVSIGN-----VHGLEDI-PRIDIPLLKRIAEV---------------SPVPLVIHGGSGIPP 212 (283)
T ss_pred CHHHHHHHHHHhCcCeeehhccc-----cccCCCC-CCcCHHHHHHHHhh---------------CCCCEEEeCCCCCCH
Confidence 34556666654 89999999983 3443422 11267777777654 455766655522222
Q ss_pred HHHHHHhC-CCCeEEE
Q psy7344 207 HYGAYLQD-DWPLLTE 221 (240)
Q Consensus 207 ~~~~~l~~-G~~~iti 221 (240)
+-.+.+.+ |+.-|.+
T Consensus 213 e~~~~ai~~Gi~KiNi 228 (283)
T PRK07998 213 EILRSFVNYKVAKVNI 228 (283)
T ss_pred HHHHHHHHcCCcEEEE
Confidence 33355555 8888887
No 491
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=40.20 E-value=2.4e+02 Score=24.24 Aligned_cols=88 Identities=14% Similarity=0.063 Sum_probs=54.1
Q ss_pred ChhhHHHhhhcccCCCCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhh
Q psy7344 99 DWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPN 178 (240)
Q Consensus 99 d~eli~~i~~~~~~~~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~ 178 (240)
+.++++++.... .| +|++| .+.+..++.+.++.|++-|-||.. ...||+.++++.+ .-
T Consensus 62 n~~~i~~i~~~~----~~--v~vGG-GIrs~e~~~~~l~~Ga~rvvigT~--------------a~~~p~~l~~~~~-~~ 119 (241)
T PRK14114 62 NLPVLEKLSEFA----EH--IQIGG-GIRSLDYAEKLRKLGYRRQIVSSK--------------VLEDPSFLKFLKE-ID 119 (241)
T ss_pred hHHHHHHHHhhc----Cc--EEEec-CCCCHHHHHHHHHCCCCEEEECch--------------hhCCHHHHHHHHH-hC
Confidence 357777776542 24 46544 445555666777777777655443 4689999999943 21
Q ss_pred hccccccCCCCCCCCeeeEEeee--------h-----hcHHHHHHHHhC-CCCeEEE
Q psy7344 179 MVHFVIAEPHCDGNDINIGCPQM--------V-----AKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 179 ~~~~~i~~~~~~~~~~pvsvK~r--------~-----~~~~~~~~~l~~-G~~~iti 221 (240)
. .+-+++-.+ + .+..++++.+++ |+..+.+
T Consensus 120 ~-------------~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~ 163 (241)
T PRK14114 120 V-------------EPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVH 163 (241)
T ss_pred C-------------CEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEE
Confidence 1 222322221 1 146899999999 9988765
No 492
>PTZ00413 lipoate synthase; Provisional
Probab=40.20 E-value=1.9e+02 Score=27.04 Aligned_cols=45 Identities=4% Similarity=-0.127 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee--------hhcHHHHHHHHhC-CCCeEEE
Q psy7344 166 DWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM--------VAKRGHYGAYLQD-DWPLLTE 221 (240)
Q Consensus 166 ~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r--------~~~~~~~~~~l~~-G~~~iti 221 (240)
+|+.-.++++.+++. ....+.+|-- .++.+++++.|.+ |+|.++|
T Consensus 276 tYe~sLe~Lr~AKe~-----------f~~gi~tcSGiIVGLGET~eEvie~m~dLrelGVDivtI 329 (398)
T PTZ00413 276 SYRQSLKVLEHVKEF-----------TNGAMLTKSSIMLGLGETEEEVRQTLRDLRTAGVSAVTL 329 (398)
T ss_pred CHHHHHHHHHHHHHH-----------hcCCceEeeeeEecCCCCHHHHHHHHHHHHHcCCcEEee
Confidence 677766777766553 1112333322 4677889999999 9999999
No 493
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=40.17 E-value=62 Score=29.52 Aligned_cols=92 Identities=12% Similarity=0.055 Sum_probs=52.5
Q ss_pred CCceeEEeecCCHHHHHHHHHHHccCCCEEEecCCCchhhhhcccccccc--cCCHHHHHHHHHHhhhccccccCCCCCC
Q psy7344 114 MCGHSLMFCGNDSKNLTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYL--QDDWPLLTNLVYSPNMVHFVIAEPHCDG 191 (240)
Q Consensus 114 ~~pvivqi~g~d~~~~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l--~~~p~~i~~iv~~~~~~~~~i~~~~~~~ 191 (240)
..+++.+| .+.+-+..+-+.++ .+||||+.+|= .|..+ -.=|..=++|++..+..
T Consensus 217 ~~~iiaKI--E~~~~v~nl~eI~~-~sDgimiaRGD---------Lg~e~~~e~v~~~Qk~ii~~~~~~----------- 273 (348)
T PF00224_consen 217 DIKIIAKI--ETKEAVENLDEILE-ASDGIMIARGD---------LGVEIPFEKVPIIQKRIIKKCNAA----------- 273 (348)
T ss_dssp TSEEEEEE---SHHHHHTHHHHHH-HSSEEEEEHHH---------HHHHSTGGGHHHHHHHHHHHHHHH-----------
T ss_pred ccceeecc--ccHHHHhhHHHHhh-hcCeEEEecCC---------cceeeeHHHHHHHHHHHHHHHHHh-----------
Confidence 35688887 33333333333333 37999998881 12222 22344446777776654
Q ss_pred CCeeeEEeee-hh-----------cHHHHHHHHhCCCCeEEEeccccccc
Q psy7344 192 NDINIGCPQM-VA-----------KRGHYGAYLQDDWPLLTELGKMAMLV 229 (240)
Q Consensus 192 ~~~pvsvK~r-~~-----------~~~~~~~~l~~G~~~itih~R~~~~~ 229 (240)
..||.+-+. ++ ..-+.+.++.+|+|++.+-+=|..-+
T Consensus 274 -~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg~d~vmLs~ETa~G~ 322 (348)
T PF00224_consen 274 -GKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDGADAVMLSGETAIGK 322 (348)
T ss_dssp -T-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT-SEEEESHHHHTSS
T ss_pred -CCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcCCCEEEecCCcCCCC
Confidence 568887666 21 23466667777999999976665433
No 494
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=40.05 E-value=1.3e+02 Score=25.46 Aligned_cols=76 Identities=11% Similarity=0.066 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCH-HHHHHHHHHhhhccccccCCCCCCCCeeeEEeeeh
Q psy7344 125 DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDW-PLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMV 202 (240)
Q Consensus 125 d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p-~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~ 202 (240)
+.++..+.++.+.+ |++.|+++.+-|.+.. .++.++ +.++++.+.. .+.++.+=.|
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-------p~~~~~~~~i~~l~~~~--------------~~~~~~~l~~- 74 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVGSGASPKAV-------PQMEDDWEVLRAIRKLV--------------PNVKLQALVR- 74 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCcCcccc-------ccCCCHHHHHHHHHhcc--------------CCcEEEEEcc-
Confidence 56777777777755 8999999998765432 123443 3344443321 1223332111
Q ss_pred hcHHHHHHHHhC-CCCeEEEec
Q psy7344 203 AKRGHYGAYLQD-DWPLLTELG 223 (240)
Q Consensus 203 ~~~~~~~~~l~~-G~~~itih~ 223 (240)
.-.+.++.+.+ |++.|.+-.
T Consensus 75 -~~~~~i~~a~~~g~~~i~i~~ 95 (265)
T cd03174 75 -NREKGIERALEAGVDEVRIFD 95 (265)
T ss_pred -CchhhHHHHHhCCcCEEEEEE
Confidence 11667888888 999887754
No 495
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=39.25 E-value=87 Score=28.84 Aligned_cols=67 Identities=16% Similarity=0.159 Sum_probs=38.0
Q ss_pred CCceeEEeecC----CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCC
Q psy7344 114 MCGHSLMFCGN----DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPH 188 (240)
Q Consensus 114 ~~pvivqi~g~----d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~ 188 (240)
+-|+.||=+.+ |.+...+-.+.|++ |||.|-+ .+|.. .+-+.+.+|.+.+++.
T Consensus 14 ~~PI~VQSMt~t~t~Dv~atv~QI~~L~~aGceivRv--avp~~------------~~a~al~~I~~~l~~~-------- 71 (359)
T PF04551_consen 14 GAPISVQSMTNTDTRDVEATVAQIKRLEEAGCEIVRV--AVPDM------------EAAEALKEIKKRLRAL-------- 71 (359)
T ss_dssp TS--EEEEE--S-TT-HHHHHHHHHHHHHCT-SEEEE--EE-SH------------HHHHHHHHHHHHHHCT--------
T ss_pred CCCEEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEE--cCCCH------------HHHHHHHHHHHhhccC--------
Confidence 46899987654 66666666666655 7777765 33333 3445677788777664
Q ss_pred CCCCCeeeEEeeehhc
Q psy7344 189 CDGNDINIGCPQMVAK 204 (240)
Q Consensus 189 ~~~~~~pvsvK~r~~~ 204 (240)
++++|+.+-+-++.
T Consensus 72 --g~~iPlVADIHFd~ 85 (359)
T PF04551_consen 72 --GSPIPLVADIHFDY 85 (359)
T ss_dssp --T-SS-EEEEESTTC
T ss_pred --CCCCCeeeecCCCH
Confidence 27889998887653
No 496
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.12 E-value=94 Score=27.51 Aligned_cols=62 Identities=6% Similarity=-0.062 Sum_probs=37.4
Q ss_pred HHHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHH
Q psy7344 129 LTEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHY 208 (240)
Q Consensus 129 ~~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~ 208 (240)
..++.+.++.++|.|++.- -.|+.++++++.++. ++|+.+=.-+ +.+-
T Consensus 199 leea~eA~~~gaD~I~LD~-----------------~~~e~l~~~v~~~~~-------------~i~leAsGGI--t~~n 246 (277)
T PRK05742 199 LDELRQALAAGADIVMLDE-----------------LSLDDMREAVRLTAG-------------RAKLEASGGI--NEST 246 (277)
T ss_pred HHHHHHHHHcCCCEEEECC-----------------CCHHHHHHHHHHhCC-------------CCcEEEECCC--CHHH
Confidence 4445555566899997730 267788888875432 3355554333 2234
Q ss_pred HHHHhC-CCCeEEEe
Q psy7344 209 GAYLQD-DWPLLTEL 222 (240)
Q Consensus 209 ~~~l~~-G~~~itih 222 (240)
++.+.+ |+|.|.+-
T Consensus 247 i~~~a~tGvD~Isvg 261 (277)
T PRK05742 247 LRVIAETGVDYISIG 261 (277)
T ss_pred HHHHHHcCCCEEEEC
Confidence 444556 99999983
No 497
>PRK15108 biotin synthase; Provisional
Probab=39.11 E-value=1.7e+02 Score=26.60 Aligned_cols=78 Identities=10% Similarity=0.069 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehh
Q psy7344 125 DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVA 203 (240)
Q Consensus 125 d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~ 203 (240)
+++++.+.++.+.+ |+.-|-+..|- . .....+.+.+.++++.+++. .+++++-...-
T Consensus 77 s~eEI~~~a~~~~~~G~~~i~i~~~g---------~-~p~~~~~e~i~~~i~~ik~~------------~i~v~~s~G~l 134 (345)
T PRK15108 77 EVEQVLESARKAKAAGSTRFCMGAAW---------K-NPHERDMPYLEQMVQGVKAM------------GLETCMTLGTL 134 (345)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecC---------C-CCCcchHHHHHHHHHHHHhC------------CCEEEEeCCcC
Confidence 55666776666543 65555332220 0 00123557777777777642 23343333322
Q ss_pred cHHHHHHHHhC-CCCeEEEeccc
Q psy7344 204 KRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 204 ~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+ .+.++.|.+ |+|.+.+---|
T Consensus 135 s-~e~l~~LkeAGld~~n~~leT 156 (345)
T PRK15108 135 S-ESQAQRLANAGLDYYNHNLDT 156 (345)
T ss_pred C-HHHHHHHHHcCCCEEeecccc
Confidence 2 677777777 88877664444
No 498
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=38.89 E-value=1.6e+02 Score=25.79 Aligned_cols=47 Identities=17% Similarity=0.041 Sum_probs=31.9
Q ss_pred ccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeee----hhcHHHHHHHHhC-CCCeEEEeccc
Q psy7344 163 LQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQM----VAKRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 163 l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r----~~~~~~~~~~l~~-G~~~itih~R~ 225 (240)
.+.|.++++.+-+ ++.||.+|.- +++....++.+.+ |...|.+-=|-
T Consensus 108 ~~~n~~LL~~va~----------------tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg 159 (250)
T PRK13397 108 NMQNFEFLKTLSH----------------IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERG 159 (250)
T ss_pred cccCHHHHHHHHc----------------cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccc
Confidence 6788887665553 5679999988 3455666677777 88766664443
No 499
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=38.84 E-value=89 Score=27.42 Aligned_cols=62 Identities=8% Similarity=-0.117 Sum_probs=36.9
Q ss_pred HHHHHHHccCCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehhcHHHHH
Q psy7344 130 TEAAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYG 209 (240)
Q Consensus 130 ~~aa~~le~~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~~~~~~~ 209 (240)
.++.+.++.++|.|++.-- .|+.++++++.++. ++|+.+=.-+ +.+-+
T Consensus 193 eea~~A~~~gaDyI~ld~~-----------------~~e~l~~~~~~~~~-------------~ipi~AiGGI--~~~ni 240 (268)
T cd01572 193 EQLKEALEAGADIIMLDNM-----------------SPEELREAVALLKG-------------RVLLEASGGI--TLENI 240 (268)
T ss_pred HHHHHHHHcCCCEEEECCc-----------------CHHHHHHHHHHcCC-------------CCcEEEECCC--CHHHH
Confidence 4455555678999988421 37888888776432 2355543333 12334
Q ss_pred HHHhC-CCCeEEEec
Q psy7344 210 AYLQD-DWPLLTELG 223 (240)
Q Consensus 210 ~~l~~-G~~~itih~ 223 (240)
..+.+ |+|.|.+-.
T Consensus 241 ~~~a~~Gvd~Iav~s 255 (268)
T cd01572 241 RAYAETGVDYISVGA 255 (268)
T ss_pred HHHHHcCCCEEEEEe
Confidence 44456 999999843
No 500
>PRK00915 2-isopropylmalate synthase; Validated
Probab=38.83 E-value=1.1e+02 Score=29.44 Aligned_cols=77 Identities=10% Similarity=0.058 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHcc-CCCEEEecCCCchhhhhcccccccccCCHHHHHHHHHHhhhccccccCCCCCCCCeeeEEeeehh
Q psy7344 125 DSKNLTEAAKLAEP-HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVA 203 (240)
Q Consensus 125 d~~~~~~aa~~le~-~~d~Idin~gCP~~~~~~~g~G~~l~~~p~~i~~iv~~~~~~~~~i~~~~~~~~~~pvsvK~r~~ 203 (240)
+.++-.+.++.|.+ |++.||++....+ ..|++.++++.+.... ..+-..+-.+..
T Consensus 24 s~e~K~~ia~~L~~~Gv~~IE~G~p~~s------------~~d~~~v~~i~~~~~~------------~~i~a~~r~~~~ 79 (513)
T PRK00915 24 TVEEKLQIAKQLERLGVDVIEAGFPASS------------PGDFEAVKRIARTVKN------------STVCGLARAVKK 79 (513)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCC------------hHHHHHHHHHHhhCCC------------CEEEEEccCCHH
Confidence 66777788888866 8999999764211 1366666666553221 222223322344
Q ss_pred cHHHHHHHHhC-CCCeEEEeccc
Q psy7344 204 KRGHYGAYLQD-DWPLLTELGKM 225 (240)
Q Consensus 204 ~~~~~~~~l~~-G~~~itih~R~ 225 (240)
+.....+.+.+ |++.|.+..=+
T Consensus 80 did~a~~a~~~~~~~~v~i~~~~ 102 (513)
T PRK00915 80 DIDAAAEALKPAEAPRIHTFIAT 102 (513)
T ss_pred HHHHHHHHhhcCCCCEEEEEECC
Confidence 55556667777 88888876544
Done!