RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7344
         (240 letters)



>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096
           {Thermotoga maritima [TaxId: 2336]}
          Length = 305

 Score = 30.7 bits (68), Expect = 0.15
 Identities = 22/141 (15%), Positives = 40/141 (28%), Gaps = 7/141 (4%)

Query: 58  NGPLFMGPLFIAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGH 117
                     I       ID+N GCP     +   G  L  D      +  + R  + G 
Sbjct: 65  EPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGK 124

Query: 118 SLMFCG---NDSKNLTEAAKLAEPHCDGIDI----NIGCPQMVAKRGHYGAYLQDDWPLL 170
             +        ++       L E   D + I     +      A+        +     +
Sbjct: 125 FSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEKRIPTFV 184

Query: 171 TNLVYSPNMVHFVIAEPHCDG 191
           +  +++P      + E  CDG
Sbjct: 185 SGDIFTPEDAKRALEESGCDG 205



 Score = 26.9 bits (58), Expect = 2.2
 Identities = 23/202 (11%), Positives = 35/202 (17%), Gaps = 8/202 (3%)

Query: 13  PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELVVHFS-WVSKNGPLFMGPLFIAEP 71
                ID+N GCP     +   G  L  D      +V      VS    +     +    
Sbjct: 78  EKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNE 137

Query: 72  HCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKTRSHMCGHSLMFCGNDSKNLTE 131
             +   I +                                          G+       
Sbjct: 138 VEEIYRILVEEG---VDEVFIHTRTVVQSFTGRAEWKALSVLEKRIPTFVSGDIFTPEDA 194

Query: 132 AAKLAEPHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDG 191
              L E  CDG+ +                                        E     
Sbjct: 195 KRALEESGCDGLLVA-RGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKT 253

Query: 192 NDINIGCPQMVAKRGHYGAYLQ 213
                   +M   R     Y +
Sbjct: 254 KGERKAVVEM---RKFLAGYTK 272


>d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate
           isomerase, PRAI {Escherichia coli [TaxId: 562]}
          Length = 198

 Score = 27.2 bits (59), Expect = 1.4
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 6/81 (7%)

Query: 71  PHCDGIDINIGCPQMVAKRGHYGAYLQDDWPLLTELGFKT---RSHMCGHSLMFCGNDSK 127
                  +++G      +  H   Y+ D+    +   F          G+ L+  G  + 
Sbjct: 98  HVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSGQRFDWSLLNGQSLGNVLLAGGLGAD 157

Query: 128 NLTEAAKLAEPHCDGIDINIG 148
           N  EAA+     C G+D N  
Sbjct: 158 NCVEAAQT---GCAGLDFNSA 175


>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein
           (hisactophilin) {Dictyostelium discoideum [TaxId:
           44689]}
          Length = 118

 Score = 24.5 bits (53), Expect = 6.8
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 9/61 (14%)

Query: 153 VAKRGHYGAYLQDDWPLLTNLVYSPNMVHFVIAEPHCDGNDINIGCPQMVAKRGHYGAYL 212
           VA + H G YL         L +  +  H +    H  G          V+ +GH+  Y+
Sbjct: 43  VALKTHCGKYLSIGDHKQVYLSHHLHGDHSLFHLEHHGGK---------VSIKGHHHHYI 93

Query: 213 Q 213
            
Sbjct: 94  S 94


>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 105

 Score = 23.9 bits (52), Expect = 9.3
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 87  AKRGHYGAYLQDDWPLLTELGFKTRSHMC 115
             +  Y   +Q+  P L ELG  T   + 
Sbjct: 73  PHKEIYPYVIQELRPTLNELGISTPEELG 101


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.142    0.480 

Gapped
Lambda     K      H
   0.267   0.0433    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 977,446
Number of extensions: 43756
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 9
Length of query: 240
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,268,006
Effective search space: 199076942
Effective search space used: 199076942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.2 bits)