BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7348
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E8T|A Chain A, Crystal Structure Of Epiphyas Postvittana Takeout 1
pdb|3E8W|A Chain A, Crystal Structure Of Epiphyas Postvittana Takeout 1
Length = 220
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 83/206 (40%), Gaps = 8/206 (3%)
Query: 7 PCTKASPKINDCIKQTFNHLRKYLIQGIDEIAVPSIEPLIIPAMKMENGHGAVRVRAIFS 66
P K + + + C+ F + G+ + V ++ L + + ++
Sbjct: 4 PVEKCNLEDSACMTSAFQQALPTFVAGLPDHGVEVMDVLDLDDFAFD----LSGLQFTLK 59
Query: 67 NLTIHGASNYTVLNVKSDLNKYRIDLALHLPHIEVTGNYDVNGNVLLFPVRSRGDFWAAF 126
+ G + NVK DL K I++ HL V G+Y G +L+ P+ G
Sbjct: 60 EGKLKGLKGAVIDNVKWDLKKKNIEVDFHLDAT-VKGHYTAGGRILILPITGDGQMKLKL 118
Query: 127 GNV-TGLAKLYATEQLRNETKFMKTERLGIQFKL-SKSNFKIKDFINRNNVIGEAMNIFL 184
N+ L Y E+ + ++ + F + + F + + N N + + M FL
Sbjct: 119 KNIHIHLVVSYEMEKDAEGVDHVIFKKYTVTFDVKDNAQFGLTNLFNGNKELSDTMLTFL 178
Query: 185 NQNAAEIIEEM-KPAASAAIGKHFKS 209
NQN ++ EE KP AA K FK+
Sbjct: 179 NQNWKQVSEEFGKPVMEAAAKKIFKN 204
>pdb|2VBK|A Chain A, Native Tailspike Protein Of Bacteriophage Sf6
pdb|2VBM|A Chain A, Tailspike Protein Of Bacteriophage Sf6 Complexed With
Tetrasaccharide
Length = 514
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 12/103 (11%)
Query: 15 INDCIKQTFNHLRKYLIQGIDEIA-VPSIEPLIIPAMKMENGHGAVRVRAIFSNLTIHGA 73
I+D + + ++ ID +A +PS L IPA G+ I + I G
Sbjct: 60 IDDGVTDNYQAIQN----AIDAVASLPSGGELFIPASNQAVGYIVGSTLLIPGGVNIRGV 115
Query: 74 SNYTVLNVKSDLN------KYRID-LALHLPHIEVTGNYDVNG 109
+ L KS L Y D + +L +I VTGN NG
Sbjct: 116 GKASQLRAKSGLTGSVLRLSYDSDTIGRYLRNIRVTGNNTCNG 158
>pdb|2VBE|A Chain A, Tailspike Protein Of Bacteriophage Sf6
Length = 514
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 34 IDEIA-VPSIEPLIIPAMKMENGHGAVRVRAIFSNLTIHGASNYTVLNVKSDLN------ 86
ID +A +PS L IPA G+ I + I G + L KS L
Sbjct: 75 IDAVASLPSGGELFIPASNQAVGYIVGSTLLIPGGVNIRGVGKASQLRAKSGLTGSVLRL 134
Query: 87 KYRID-LALHLPHIEVTGNYDVNG 109
Y D + +L +I VTGN NG
Sbjct: 135 SYDSDTIGRYLRNIRVTGNNTCNG 158
>pdb|1ATU|A Chain A, Uncleaved Alpha-1-Antitrypsin
Length = 374
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 86 NKYRIDLALHLPHIEVTGNYDV 107
N+ R +LHLP + +TG YD+
Sbjct: 258 NEDRRSASLHLPKLSITGTYDL 279
>pdb|3DRU|A Chain A, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
pdb|3DRU|B Chain B, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
pdb|3DRU|C Chain C, Crystal Structure Of Gly117phe Alpha1-Antitrypsin
Length = 404
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 86 NKYRIDLALHLPHIEVTGNYDV 107
N+ R +LHLP + +TG YD+
Sbjct: 288 NEDRRSASLHLPKLSITGTYDL 309
>pdb|3DRM|A Chain A, 2.2 Angstrom Crystal Structure Of Thr114phe Alpha1-
Antitrypsin
Length = 404
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 86 NKYRIDLALHLPHIEVTGNYDV 107
N+ R +LHLP + +TG YD+
Sbjct: 288 NEDRRSASLHLPKLSITGTYDL 309
>pdb|1EZX|A Chain A, Crystal Structure Of A Serpin:protease Complex
Length = 335
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 86 NKYRIDLALHLPHIEVTGNYDV 107
N+ R +LHLP + +TG YD+
Sbjct: 255 NEDRRSASLHLPKLSITGTYDL 276
>pdb|3NE4|A Chain A, 1.8 Angstrom Structure Of Intact Native Wild-Type
Alpha-1-Antitrypsin
Length = 424
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 86 NKYRIDLALHLPHIEVTGNYDV 107
N+ R +LHLP + +TG YD+
Sbjct: 308 NEDRRSASLHLPKLSITGTYDL 329
>pdb|2QUG|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin, Crystal Form A
pdb|3CWL|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin, Crystal Form B
pdb|3CWM|A Chain A, Crystal Structure Of Alpha-1-Antitrypsin Complexed With
Citrate
Length = 394
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 86 NKYRIDLALHLPHIEVTGNYDV 107
N+ R +LHLP + +TG YD+
Sbjct: 278 NEDRRSASLHLPKLSITGTYDL 299
>pdb|1QLP|A Chain A, 2.0 Angstrom Structure Of Intact Alpha-1-Antitrypsin: A
Canonical Template For Active Serpins
Length = 394
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 86 NKYRIDLALHLPHIEVTGNYDV 107
N+ R +LHLP + +TG YD+
Sbjct: 278 NEDRRSASLHLPKLSITGTYDL 299
>pdb|1KCT|A Chain A, Alpha1-Antitrypsin
Length = 394
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 86 NKYRIDLALHLPHIEVTGNYDV 107
N+ R +LHLP + +TG YD+
Sbjct: 278 NEDRRSASLHLPKLSITGTYDL 299
>pdb|1PSI|A Chain A, Intact Recombined Alpha1-Antitrypsin Mutant Phe 51 To Leu
Length = 394
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 86 NKYRIDLALHLPHIEVTGNYDV 107
N+ R +LHLP + +TG YD+
Sbjct: 278 NEDRRSASLHLPKLSITGTYDL 299
>pdb|1OO8|A Chain A, Crystal Structure Of A1pi-Pittsburgh In The Native
Conformation
pdb|1OPH|A Chain A, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And
S195a Trypsin
Length = 394
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 86 NKYRIDLALHLPHIEVTGNYDV 107
N+ R +LHLP + +TG YD+
Sbjct: 278 NEDRRSASLHLPKLSITGTYDL 299
>pdb|3NDF|A Chain A, Cleaved Antitrypsin With P8-P6 Asp
Length = 343
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 86 NKYRIDLALHLPHIEVTGNYDV 107
N+ R +LHLP + +TG YD+
Sbjct: 263 NEDRRSASLHLPKLSITGTYDL 284
>pdb|1D5S|A Chain A, Crystal Structure Of Cleaved Antitrypsin Polymer
Length = 334
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 86 NKYRIDLALHLPHIEVTGNYDV 107
N+ R +LHLP + +TG YD+
Sbjct: 259 NEDRRSASLHLPKLSITGTYDL 280
>pdb|3NDD|A Chain A, Cleaved Antitrypsin With P10 Pro, And P9-P6 Asp
Length = 343
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 86 NKYRIDLALHLPHIEVTGNYDV 107
N+ R +LHLP + +TG YD+
Sbjct: 263 NEDRRSASLHLPKLSITGTYDL 284
>pdb|1HP7|A Chain A, A 2.1 Angstrom Structure Of An Uncleaved
Alpha-1-Antitrypsin Shows Variability Of The Reactive
Center And Other Loops
Length = 394
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 86 NKYRIDLALHLPHIEVTGNYDV 107
N+ R +LHLP + +TG YD+
Sbjct: 278 NEDRRSASLHLPKLSITGTYDL 299
>pdb|1IZ2|A Chain A, Interactions Causing The Kinetic Trap In Serpin Protein
Folding
Length = 394
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 86 NKYRIDLALHLPHIEVTGNYDV 107
N+ R +LHLP + +TG YD+
Sbjct: 278 NEDRRSASLHLPKLSITGTYDL 299
>pdb|2D26|A Chain A, Active Site Distortion Is Sufficient For Proteinase
Inhibit Second Crystal Structure Of Covalent
Serpin-Proteinase Complex
Length = 358
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 86 NKYRIDLALHLPHIEVTGNYDV 107
N+ R +LHLP + +TG YD+
Sbjct: 278 NEDRRSASLHLPKLSITGTYDL 299
>pdb|7API|A Chain A, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
pdb|8API|A Chain A, The S Variant Of Human Alpha1-antitrypsin, Structure And
Implications For Function And Metabolism
pdb|9API|A Chain A, The S Variant Of Human Alpha1-Antitrypsin, Structure And
Implications For Function And Metabolism
Length = 347
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 86 NKYRIDLALHLPHIEVTGNYDV 107
N+ R +LHLP + +TG YD+
Sbjct: 267 NEDRRSASLHLPKLSITGTYDL 288
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,458,731
Number of Sequences: 62578
Number of extensions: 247583
Number of successful extensions: 624
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 605
Number of HSP's gapped (non-prelim): 27
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)