BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7348
(229 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VBV3|TAKT_DROME Protein takeout OS=Drosophila melanogaster GN=to PE=2 SV=1
Length = 249
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 97/226 (42%), Gaps = 10/226 (4%)
Query: 7 PCTKASPKINDCIKQTFNHL-RKYLIQGIDEIAVPSIEPLIIPAMKMENGHGA--VRVRA 63
PC +CI + N L + +G + + ++PL + M + G + V +
Sbjct: 26 PCKYGD---GECIMKLCNTLFSENSAEGDPGLNLMQLDPLKVDRMVISQGESSSPVGITL 82
Query: 64 IFSNLTIHGASNYTVLNVKS---DLNKYRIDLALHLPHIEVTGNYDVNGNVLLFPVRSRG 120
F++ ++G + ++ VK DL + ++ + + G Y++ G VL+ P+ G
Sbjct: 83 TFTDNLLYGIKDQRIVKVKGFGRDLTA-KHEVKIVTKTFSLVGPYNIQGKVLILPISGTG 141
Query: 121 DFWAAFGNVTGLAKLYATEQLRNETKFMKTERLGIQFKLSKSNFKIKDFINRNNVIGEAM 180
NV + ++N ++ L I K S++ + N + +G+ M
Sbjct: 142 QSNMTMVNVRAIVSFSGKPLVKNGETYLDVTDLKITMKPESSHYHFSNLFNGDKALGDNM 201
Query: 181 NIFLNQNAAEIIEEMKPAASAAIGKHFKSFLNAAFLQIPLKVWLRD 226
N+FLN+N+ I +E A + GK + + F ++P + D
Sbjct: 202 NVFLNENSEAIYKETAKAIDRSFGKLYLGVVKGVFSKLPYAKFFAD 247
>sp|Q24764|CCCP_DROYA Circadian clock-controlled protein OS=Drosophila yakuba
GN=anon-3B1.2 PE=3 SV=1
Length = 260
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 99/224 (44%), Gaps = 8/224 (3%)
Query: 4 YIHPCTKASPKINDCIKQTFNHLRKYLIQGIDEIAVPSIEPLIIPAMKMENG--HGAVRV 61
+ P + + C+ + +GI E V ++EP+ + M++E+G +++
Sbjct: 29 FPSPLKRCKLQEESCLVAQAQTFFQAFQKGIPERQVAALEPIDLGTMRIESGGHSESLKF 88
Query: 62 RAIFSNLTIHGASNYTVLN-----VKSDLNKYRIDLALHLPHIEVTGNYDVNGNVLLFPV 116
+ + S+ ++ +N V+ K ++ L + P +EV YDV+G +L+ P+
Sbjct: 89 KLVMSDAKLYNLANSVVVKSLKGFTKDLTKPLKLTLLMDTPELEVRAKYDVDGKLLILPI 148
Query: 117 RSRGDFWAAFGNVTGLAKLYATEQLRNET-KFMKTERLGIQFKLSKSNFKIKDFINRNNV 175
S+GD V ++ A R++ ++ K+ +F + + + N
Sbjct: 149 VSKGDLTIRMNEVQTKRRITAEPVKRSDGHSYLNITDYKTITKIKGGHFDLSNLFDDNKE 208
Query: 176 IGEAMNIFLNQNAAEIIEEMKPAASAAIGKHFKSFLNAAFLQIP 219
+ E+ LNQ + +++P + A K F++ L + + IP
Sbjct: 209 LRESTLKVLNQEWNTLALDVQPKINEACSKAFRAILQSLWANIP 252
>sp|O76879|CCCP_DROME Circadian clock-controlled protein OS=Drosophila melanogaster
GN=anon-3B1.2 PE=2 SV=2
Length = 260
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 92/198 (46%), Gaps = 14/198 (7%)
Query: 33 GIDEIAVPSIEPLIIPAMKMENGHGAVRVRAIFSNLTIHGASNYTVLN---VKS------ 83
GI E V ++EP+ + M +E+G + ++ LT+ A Y + N VKS
Sbjct: 58 GIPERQVAALEPIALGTMFIESGGHSESIKF---KLTMSDAKLYNLANSMMVKSLKGFTK 114
Query: 84 DLNK-YRIDLALHLPHIEVTGNYDVNGNVLLFPVRSRGDFWAAFGNVTGLAKLYATEQLR 142
DL + ++ L L P +EV YDV+G +L+ P+ S+GD +V + A R
Sbjct: 115 DLTRPLKLTLLLDNPELEVRAKYDVDGKLLILPIVSKGDLTIRLNDVHTKVWITAEPVKR 174
Query: 143 NET-KFMKTERLGIQFKLSKSNFKIKDFINRNNVIGEAMNIFLNQNAAEIIEEMKPAASA 201
++ ++ K+ +F + + N N + ++ LNQ + + +++P +
Sbjct: 175 SDGHTYLNITDYKTATKIKGGHFDLSNLFNDNKELRDSTLKVLNQEWSTLALDVQPKINE 234
Query: 202 AIGKHFKSFLNAAFLQIP 219
A K F + + + + IP
Sbjct: 235 ACAKAFSAIVQSLWANIP 252
>sp|Q04AM5|Y921_LACDB UPF0398 protein LBUL_0921 OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC BAA-365) GN=LBUL_0921 PE=3 SV=1
Length = 186
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 66 SNLTIHGASNYTVLNVKSDLNKYRIDLALHLPHIEVTGNYDVNGNVLLFPVRSRGDFWAA 125
+NL + S L ++ D N + LA+ LP+++ + N + L ++++ DFW+A
Sbjct: 51 ANLGVEQWSAEVALELRQDYN---LRLAVMLPYLDFGSRWSENNQLKLQNLKNQADFWSA 107
Query: 126 FGNVTGLAKLYATEQLRNETKFM 148
T Q R +FM
Sbjct: 108 ----TSKGPYQGGRQFREYQQFM 126
>sp|Q1GA98|Y1014_LACDA UPF0398 protein Ldb1014 OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC 11842 / DSM 20081) GN=Ldb1014
PE=3 SV=1
Length = 186
Score = 33.9 bits (76), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 66 SNLTIHGASNYTVLNVKSDLNKYRIDLALHLPHIEVTGNYDVNGNVLLFPVRSRGDFWAA 125
+NL + S L ++ D N + LA+ LP+++ + N + L ++++ DFW+A
Sbjct: 51 ANLGVEQWSAEVALELRQDYN---LRLAVMLPYLDFGSRWSENNQLKLQNLKNQADFWSA 107
Query: 126 FGNVTGLAKLYATEQLRNETKFM 148
T Q R +FM
Sbjct: 108 ----TSKEPYQGGRQFREYQQFM 126
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,676,085
Number of Sequences: 539616
Number of extensions: 3213816
Number of successful extensions: 8019
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 8011
Number of HSP's gapped (non-prelim): 8
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)